Citrus Sinensis ID: 018675

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
MEFLDDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL
Secondary Structure (PSIPRED)
ccEEEcccccEEEEEEEccccccEEEEEEcccccccccccEEEEEEccccEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEccccccEEEcEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccccEEccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEcccccccccccccccEEEEEEEcccccccEEEEEEcccccEEEEcccccEEEEEccccccccccccEEcccccccccccEEEEEEccccccEEEEEEccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEEccccccEEEEEEcccccccccccEEEEEccccEEEEEEcccccEEEEEEccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccccEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEccccccccEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEccccccccccEEEEHccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEccccccccEEEEEcccccccEEEEEEccccEEEEEccccEEEEEEccccccccccccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEccccc
Coil and Loop (DISEMBL)
meflddgnYELREIQTLeghtdrvwslawkptagvdgvapvfascsgdktVRIWEQSASSRFWNCKAVLEEMHTRtvrscawspsgkllatasfdattciwedvggdyeCVATLeghenevksvswnasGTLLatcgrdksvwiwevmpgnefecVSVLQGHaqdvkmvqwhptmdvLFSCSYDNTIKVWWaedtdsdnwhcvqtisesnnghsstIWALsfnakgdklvscsddltiKIWGaditrmqsgdgyaSWRHLCtisgyhdrtifsvhwsregiiasgaaddsVQFFVEskddlidgpsyKMLLKKekahdmdvnsvqwspgerrllasasdDGMIKIWELANTL
Flexible Loop (DISEMBL)
MEFLDDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIsesnnghsSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVEskddlidgPSYKMLLKKEkahdmdvnsvqwspGERRLlasasddgmiKIWELANTL
Low Complexity Region (SEG)
MEFLDDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL
Disordered region (IsUnstruct)
********YELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL******************************MIKIWE*****
Disordered Region (DISOPRED)
MEFLDDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL
Disordered Region (DISEMBL)
MEFLDDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL
Disordered Region (DISPRO)
*****DGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFLDDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
A7RWD2	327	Probable cytosolic iron-s	N/A	no	0.900	0.969	0.510	2e-96
B4GDM7	335	Probable cytosolic iron-s	N/A	no	0.917	0.964	0.507	3e-91
B3NQR5	335	Probable cytosolic iron-s	N/A	no	0.911	0.958	0.513	9e-91
Q292E8	335	Probable cytosolic iron-s	yes	no	0.911	0.958	0.507	1e-90
Q7K1Y4	335	Probable cytosolic iron-s	yes	no	0.911	0.958	0.510	2e-90
B4P7Q3	335	Probable cytosolic iron-s	N/A	no	0.911	0.958	0.507	3e-90
B4QFZ8	335	Probable cytosolic iron-s	N/A	no	0.914	0.961	0.505	6e-90
B4HRQ6	335	Probable cytosolic iron-s	N/A	no	0.914	0.961	0.505	8e-90
B4MY77	335	Probable cytosolic iron-s	N/A	no	0.911	0.958	0.504	2e-88
B3MC74	335	Probable cytosolic iron-s	N/A	no	0.911	0.958	0.501	3e-88

>sp|A7RWD2|CIAO1_NEMVE Probable cytosolic iron-sulfur protein assembly protein OS=Nematostella vectensis GN=v1g226592 PE=3 SV=1

 Score =  352 bits (903), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 172/337 (51%), Positives = 228/337 (67%), Gaps = 20/337 (5%)

Query: 17  LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRT 76
           + GH DRVWS+AW P   V       ASC GDKT+RIW +      W CK +LE+ H RT
Sbjct: 1   MTGHEDRVWSVAWSPNGFV------LASCGGDKTIRIWGKEGDK--WICKTILEDGHQRT 52

Query: 77  VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC 136
           +RS  WSP G  LA+ASFDATTCIW+   G++EC ATLEGHENEVKSV W+ SG+LLATC
Sbjct: 53  IRSLGWSPCGTFLASASFDATTCIWDQKSGEFECNATLEGHENEVKSVDWSVSGSLLATC 112

Query: 137 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD 196
           GRDKSVWIWEV   +E+EC SV+  H QDVK V WHPT ++L SCSYD+TIK++     D
Sbjct: 113 GRDKSVWIWEVQEDDEYECASVIHSHTQDVKKVVWHPTKEILASCSYDDTIKLY---KED 169

Query: 197 SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG----D 252
            D+W C  T+     GH ST+W++SF+  GD++VSCSDD T++IW +     Q G     
Sbjct: 170 EDDWSCCDTL----EGHESTVWSISFDGSGDRIVSCSDDKTVRIWKSYPPGNQEGVVVSG 225

Query: 253 GYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKMLL 311
            +  W+ +C +SGYHDRTI+ VHWS+  G+IA+ + DD ++ F E  +   + PS++++ 
Sbjct: 226 KHTKWKCVCVLSGYHDRTIYDVHWSKVSGLIATASGDDCIRIFKEDTNSDRNQPSFQLVA 285

Query: 312 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
            + KAH MDVNS+ W P +  +LA+ SDDG +K+W  
Sbjct: 286 TQRKAHSMDVNSICWHPKDENILATCSDDGTVKLWRF 322

Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.
Nematostella vectensis (taxid: 45351)

>sp|B4GDM7|CIAO1_DROPE Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila persimilis GN=Ciao1 PE=3 SV=2

 Score =  335 bits (859), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 173/341 (50%), Positives = 226/341 (66%), Gaps = 18/341 (5%)

Query: 15  QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
            TL+GH  R+W +AW P   V      FASC  DK +R+W  S S   W+ K +L + H 
Sbjct: 8   HTLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRVW--SLSGNTWSTKTILSDGHK 59

Query: 75  RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA 134
           RT+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLA
Sbjct: 60  RTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLA 119

Query: 135 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 194
           TC RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT D+L S SYDNTIK++    
Sbjct: 120 TCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVWHPTKDILASASYDNTIKMFAESQ 179

Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRMQS 250
            DSD W C  T+S     H+ST+W++ F+A+GD+LVSCSDD T+KIW A    +   + +
Sbjct: 180 LDSD-WDCTATLSS----HTSTVWSIDFDAEGDRLVSCSDDKTLKIWRAYHPGNDAGIAT 234

Query: 251 GDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
            D  + W+ +CT+SG H R I+ V W +  G+IA+G  DD ++ F E+ D   D P+++ 
Sbjct: 235 PDKQSVWKCVCTLSGQHSRAIYDVSWCKLTGLIATGCGDDGIRIFKETSDSKRDEPTFEQ 294

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
           L  +E AH+ DVN+V+W+P     L S SDDG IKIW++A+
Sbjct: 295 LTAEETAHEQDVNAVEWNPAVAGQLISCSDDGTIKIWKVAD 335

Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.

Drosophila persimilis (taxid: 7234)

>sp|B3NQR5|CIAO1_DROER Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila erecta GN=Ciao1 PE=3 SV=1

 Score =  333 bits (855), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 174/339 (51%), Positives = 223/339 (65%), Gaps = 18/339 (5%)

Query: 15  QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
            TL+GH  R+W +AW P   V      FASC  DK +RIW  + S+  W+ K +L + H 
Sbjct: 8   HTLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRIWSLTGST--WSTKTILSDGHK 59

Query: 75  RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA 134
           RT+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLA
Sbjct: 60  RTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLA 119

Query: 135 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 194
           TC RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT +VL S SYDNTIK+ +AED
Sbjct: 120 TCSRDKSVWIWEVAGDDEFECAAVLNSHTQDVKRVVWHPTKEVLASASYDNTIKM-YAED 178

Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRMQS 250
              ++W C  T++     H+STIW + F+A G++LVSCSDD TIKIW A    +   + +
Sbjct: 179 PVDNDWDCTATLTS----HTSTIWGIDFDADGERLVSCSDDTTIKIWKAYHPGNSAGVAT 234

Query: 251 GDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
            D    W+ +CT+SG H R I+ V W +  G+IA+   DD ++ F E+ D   D P+++ 
Sbjct: 235 PDQQTVWKCVCTLSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTFEQ 294

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
           L  +E AHD DVNSVQW+P     L S SDDG IKIW++
Sbjct: 295 LTAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKV 333

Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.

Drosophila erecta (taxid: 7220)

>sp|Q292E8|CIAO1_DROPS Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila pseudoobscura pseudoobscura GN=Ciao1 PE=3 SV=1

 Score =  333 bits (854), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 172/339 (50%), Positives = 224/339 (66%), Gaps = 18/339 (5%)

Query: 15  QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
            TL+GH  R+W +AW P   V      FASC  DK +R+W  S S   W+ K +L + H 
Sbjct: 8   HTLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRVW--SLSGNTWSTKTILSDGHK 59

Query: 75  RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA 134
           RT+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLA
Sbjct: 60  RTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLA 119

Query: 135 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 194
           TC RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT D+L S SYDNTIK++    
Sbjct: 120 TCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVWHPTKDILASASYDNTIKMFAESQ 179

Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRMQS 250
            DSD W C  T+S     H+ST+W++ F+A+GD+LVSCSDD T+KIW A    +   + +
Sbjct: 180 LDSD-WDCTATLSS----HTSTVWSIDFDAEGDRLVSCSDDKTLKIWRAYHPGNDAGIAT 234

Query: 251 GDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
            D  + W+ +CT+SG H R I+ V W +  G+IA+G  DD ++ F E+ D   D P+++ 
Sbjct: 235 PDKQSVWKCVCTLSGQHSRAIYDVSWCKLTGLIATGCGDDGIRIFKETSDSKRDEPTFEQ 294

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
           L  +E AH+ DVN+V+W+P     L S SDDG IKIW++
Sbjct: 295 LTAEETAHEQDVNAVEWNPAVAGQLISCSDDGTIKIWKV 333

Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q7K1Y4|CIAO1_DROME Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila melanogaster GN=Ciao1 PE=1 SV=1

 Score =  332 bits (852), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/339 (51%), Positives = 221/339 (65%), Gaps = 18/339 (5%)

Query: 15  QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
            TL+GH  R+W +AW P   V      FASC  DK +RIW  S +   W+ K +L + H 
Sbjct: 8   HTLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRIW--SLTGNTWSTKTILSDGHK 59

Query: 75  RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA 134
           RT+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLA
Sbjct: 60  RTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLA 119

Query: 135 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 194
           TC RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT D+L S SYDNTIK++  E 
Sbjct: 120 TCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDILASASYDNTIKMFAEEP 179

Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRMQS 250
            D+D W C  T++     H+ST+W + F+A G++LVSCSDD TIKIW A    +   + +
Sbjct: 180 IDND-WDCTATLTS----HTSTVWGIDFDADGERLVSCSDDTTIKIWRAYHPGNTAGVAT 234

Query: 251 GDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
            D    W+ +CT+SG H R I+ V W +  G+IA+   DD ++ F ES D   D P+++ 
Sbjct: 235 PDQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKESSDSKPDEPTFEQ 294

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
           +  +E AHD DVNSVQW+P     L S SDDG IKIW++
Sbjct: 295 ITAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKV 333

Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.

Drosophila melanogaster (taxid: 7227)

>sp|B4P7Q3|CIAO1_DROYA Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila yakuba GN=Ciao1 PE=3 SV=1

 Score =  332 bits (850), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 172/339 (50%), Positives = 221/339 (65%), Gaps = 18/339 (5%)

Query: 15  QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
            TL+GH  R+W +AW P   V      FASC  DK +RIW  S +   W+ K +L + H 
Sbjct: 8   HTLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRIW--SLTGNTWSTKTILSDGHK 59

Query: 75  RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA 134
           RT+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLA
Sbjct: 60  RTIREIQWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLA 119

Query: 135 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 194
           TC RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT ++L S SYDNTIK++  E 
Sbjct: 120 TCSRDKSVWIWEVAGDDEFECAAVLNSHTQDVKRVVWHPTKEILASASYDNTIKMYAEEP 179

Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRMQS 250
            D+D W C  T++     H+STIW + F+A G++LVSCSDD T+KIW A    +   + +
Sbjct: 180 IDND-WDCTATLT----SHTSTIWGIDFDADGERLVSCSDDTTVKIWRAYHPGNSAGVAT 234

Query: 251 GDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
            D    W+ +CT+SG H R I+ V W +  G+IA+   DD ++ F E+ D   D P+++ 
Sbjct: 235 PDQQTVWKCVCTLSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTFEQ 294

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
           L  +E AHD DVNSVQW+P     L S SDDG IKIW++
Sbjct: 295 LTAEESAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKV 333

Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.

Drosophila yakuba (taxid: 7245)

>sp|B4QFZ8|CIAO1_DROSI Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila simulans GN=Ciao1 PE=3 SV=1

 Score =  331 bits (848), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 222/340 (65%), Gaps = 18/340 (5%)

Query: 15  QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
            TL+GH  R+W +AW P   V      FASC  DK +RIW  S +   W+ K +L + H 
Sbjct: 8   HTLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRIW--SLTGNTWSTKTILSDGHK 59

Query: 75  RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA 134
           RT+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLA
Sbjct: 60  RTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLA 119

Query: 135 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 194
           TC RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT DVL S SYDNTIK++  E 
Sbjct: 120 TCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDVLASASYDNTIKMFAEEP 179

Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRMQS 250
            D+D W C  T++     H+ST+W + F+A G++LVSCSDD TIKIW A    +   + +
Sbjct: 180 IDND-WDCTATLTS----HTSTVWGIDFDADGERLVSCSDDTTIKIWKAYHPGNTAGVAT 234

Query: 251 GDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
            +    W+ +CT+SG H R I+ V W +  G+IA+   DD ++ F E+ D   D P+++ 
Sbjct: 235 PEQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTFEQ 294

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 349
           +  +E AHD DVNSVQW+P     L S SDDG IKIW+++
Sbjct: 295 ITAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKVS 334

Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.

Drosophila simulans (taxid: 7240)

>sp|B4HRQ6|CIAO1_DROSE Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila sechellia GN=Ciao1 PE=3 SV=1

 Score =  330 bits (847), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 172/340 (50%), Positives = 221/340 (65%), Gaps = 18/340 (5%)

Query: 15  QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
            TL+GH  R+W +AW P   V      FASC  DK +RIW  S +   W  K +L + H 
Sbjct: 8   HTLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRIW--SLTGNTWGTKTILSDGHK 59

Query: 75  RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA 134
           RT+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLA
Sbjct: 60  RTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLA 119

Query: 135 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 194
           TC RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT DVL S SYDNTIK++  E 
Sbjct: 120 TCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDVLASASYDNTIKMFAEEP 179

Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRMQS 250
            D+D W C  T++     H+ST+W + F+A G++LVSCSDD TIKIW A    +   + +
Sbjct: 180 IDND-WDCTATLTS----HTSTVWGIDFDADGERLVSCSDDTTIKIWRAYHPGNTAGVAT 234

Query: 251 GDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
            +    W+ +CT+SG H R I+ V W +  G+IA+   DD ++ F E+ D   D P+++ 
Sbjct: 235 PEQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTFEQ 294

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 349
           +  +E AHD DVNSVQW+P     L S SDDG IKIW+++
Sbjct: 295 ITAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKVS 334

Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.

Drosophila sechellia (taxid: 7238)

>sp|B4MY77|CIAO1_DROWI Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila willistoni GN=Ciao1 PE=3 SV=1

 Score =  326 bits (835), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/339 (50%), Positives = 220/339 (64%), Gaps = 18/339 (5%)

Query: 15  QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
            TL+GH  R+W +AW P          FASC  DK +RIW  S +S  W+ K +L + H 
Sbjct: 8   HTLQGHKGRIWGVAWHPKGNT------FASCGEDKAIRIWSLSGNS--WSTKTILSDGHK 59

Query: 75  RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA 134
           RT+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLA
Sbjct: 60  RTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSKSGGLLA 119

Query: 135 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 194
           TC RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT ++L S SYDNTIK++    
Sbjct: 120 TCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKEILASASYDNTIKMFAESA 179

Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG--- 251
            DSD W C  T+S     H+ST+W++ F+A G++LVSCSDD T+KIW A      +G   
Sbjct: 180 LDSD-WDCTATLS----SHTSTVWSIDFDADGERLVSCSDDTTLKIWRAYHPGNDAGVAT 234

Query: 252 -DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
            D    W+ +CT+SG H R I+ V W +  G+IA+   DD ++ F ES D   D P+++ 
Sbjct: 235 PDKQTVWKCVCTLSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKESSDSKRDEPTFEQ 294

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
           +  +E AH+ DVNSV+W+P     L S SDDG IKIW++
Sbjct: 295 VTAEESAHEQDVNSVEWNPVMAGQLISCSDDGTIKIWKM 333

Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.

Drosophila willistoni (taxid: 7260)

>sp|B3MC74|CIAO1_DROAN Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila ananassae GN=Ciao1 PE=3 SV=1

 Score =  325 bits (833), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 170/339 (50%), Positives = 219/339 (64%), Gaps = 18/339 (5%)

Query: 15  QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
            TL+GH  R+W +AW P   V      FASC  DK +RIW  S +   W  K +L + H 
Sbjct: 8   HTLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRIW--SLNGNTWTTKTILSDGHK 59

Query: 75  RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA 134
           RT+R   WSP G+ LA+ASFD TT IW    G++EC ATLEGHENEVKSVSW+ SG LLA
Sbjct: 60  RTIREIRWSPCGQYLASASFDGTTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLA 119

Query: 135 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 194
           TC RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT ++L S SYDNTIK+ +AED
Sbjct: 120 TCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKELLASASYDNTIKM-FAED 178

Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG--- 251
               +W CV T+S     H+ST+W++ F+A G++LVSCSDD ++KIW A      +G   
Sbjct: 179 ALDSDWDCVATLS----SHTSTVWSIDFDATGERLVSCSDDTSLKIWQAYHPGNDAGVAT 234

Query: 252 -DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
            D    W+ +CTISG H R I+ V W +   +IA+   DD ++ F E+ D   D P+++ 
Sbjct: 235 PDKQTVWKCVCTISGQHSRAIYDVSWCKLTNLIATACGDDGIRIFKETSDSKRDEPTFEQ 294

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
           L  +E AHD DVNSV+W+P     L S SDDG IK+W++
Sbjct: 295 LTAEEGAHDQDVNSVEWNPVVEGQLISCSDDGTIKVWKM 333

Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins.

Drosophila ananassae (taxid: 7217)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
255575687	349	WD-repeat protein, putative [Ricinus com	0.977	0.985	0.806	1e-163
449462972	350	PREDICTED: probable cytosolic iron-sulfu	0.982	0.988	0.775	1e-159
225440894	344	PREDICTED: probable cytosolic iron-sulfu	0.971	0.994	0.771	1e-159
297822069	352	EMB1345 [Arabidopsis lyrata subsp. lyrat	0.980	0.980	0.738	1e-152
224064776	332	predicted protein [Populus trichocarpa]	0.937	0.993	0.775	1e-152
18401018	352	transducin/WD-40 repeat-containing prote	0.980	0.980	0.735	1e-151
224059248	323	predicted protein [Populus trichocarpa]	0.917	1.0	0.784	1e-151
357511053	344	hypothetical protein MTR_7g104550 [Medic	0.965	0.988	0.750	1e-147
363807804	352	uncharacterized protein LOC100778826 [Gl	0.940	0.940	0.753	1e-143
79323100	337	transducin/WD-40 repeat-containing prote	0.940	0.982	0.723	1e-143

>gi|255575687|ref|XP_002528743.1| WD-repeat protein, putative [Ricinus communis] gi|223531837|gb|EEF33655.1| WD-repeat protein, putative [Ricinus communis]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 279/346 (80%), Positives = 309/346 (89%), Gaps = 2/346 (0%)

Query: 4   LDDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFW 63
           L D N+EL+EIQ L GHTDRVWSLAW P     G   VFASCSGDKTVRIWEQS SS  +
Sbjct: 3   LIDTNFELKEIQKLHGHTDRVWSLAWNPATRFGGAPAVFASCSGDKTVRIWEQSPSSCSF 62

Query: 64  NCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKS 123
           +CKAVLEE HTRTVRSCAWSPSGKLLATASFDATT IWE++GGD+ECV+TLEGHENEVKS
Sbjct: 63  DCKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENIGGDFECVSTLEGHENEVKS 122

Query: 124 VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY 183
           VSWNASG+LLATC RDK+VWIWEVMPGNEFEC SVLQGH QDVKMV+WHP +DVLFSCSY
Sbjct: 123 VSWNASGSLLATCSRDKTVWIWEVMPGNEFECASVLQGHTQDVKMVKWHPNIDVLFSCSY 182

Query: 184 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA 243
           DNTIKV WAED D D WHCVQT+ ESNNGH+ST+WALSFNA+GDK+V+CSDDLT+KIW  
Sbjct: 183 DNTIKV-WAEDGDGD-WHCVQTLGESNNGHTSTVWALSFNAEGDKMVTCSDDLTLKIWET 240

Query: 244 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLID 303
           DI RM SGD +ASW H+CT+SGYHDRTIFS HWSREGIIASGAADD ++FFVESKDDL++
Sbjct: 241 DIGRMVSGDDHASWNHVCTLSGYHDRTIFSAHWSREGIIASGAADDGIRFFVESKDDLVN 300

Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 349
           GPSY++LLKKEKAHDMD+NSVQW+PGE RLLASASDDG IKIWELA
Sbjct: 301 GPSYRLLLKKEKAHDMDINSVQWAPGENRLLASASDDGTIKIWELA 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462972|ref|XP_004149209.1| PREDICTED: probable cytosolic iron-sulfur protein assembly protein-like [Cucumis sativus] gi|449500925|ref|XP_004161232.1| PREDICTED: probable cytosolic iron-sulfur protein assembly protein-like [Cucumis sativus]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/348 (77%), Positives = 306/348 (87%), Gaps = 2/348 (0%)

Query: 1   MEFLDDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS 60
           ME LD G +EL+EI  LEGHTDRVWSLAW P  GV G+  VFASCSGDKTVRIWEQS SS
Sbjct: 1   MELLD-GRFELKEIAKLEGHTDRVWSLAWNPATGVGGIPLVFASCSGDKTVRIWEQSPSS 59

Query: 61  RFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENE 120
             WNCKAVLEE HTRTVRSCAWSP+GKLLATASFDATT IWE+ GGDYECV+TLEGHENE
Sbjct: 60  GSWNCKAVLEETHTRTVRSCAWSPNGKLLATASFDATTAIWENTGGDYECVSTLEGHENE 119

Query: 121 VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS 180
           +KSV+WNASG+LLATC RD++VWIWEV+PGNE+ECVSVLQGH QDVKMVQWHPTMD+LFS
Sbjct: 120 IKSVAWNASGSLLATCSRDRTVWIWEVLPGNEYECVSVLQGHTQDVKMVQWHPTMDLLFS 179

Query: 181 CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI 240
           CSYDNT+KV WA D D+D+WHCVQT+ ESNNGHSST+WALSFNA GDK+VSCSDDLT+KI
Sbjct: 180 CSYDNTVKV-WAGDDDNDDWHCVQTLDESNNGHSSTVWALSFNATGDKMVSCSDDLTLKI 238

Query: 241 WGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDD 300
           W  D T++ S  GY+ WRH CT+SGYHDRTIFSVHWSR GIIASGAADD+++ FVE+++ 
Sbjct: 239 WETDETKLHSEAGYSPWRHTCTLSGYHDRTIFSVHWSRNGIIASGAADDAIRLFVENQEK 298

Query: 301 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
            ID  S+++L KKEKAH MDVNSVQWSPGE+ LLASASDDG I+IWEL
Sbjct: 299 GIDRSSFQLLFKKEKAHSMDVNSVQWSPGEKVLLASASDDGTIRIWEL 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440894|ref|XP_002282694.1| PREDICTED: probable cytosolic iron-sulfur protein assembly protein [Vitis vinifera] gi|297740110|emb|CBI30292.3| unnamed protein product [Vitis vinifera]

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/350 (77%), Positives = 309/350 (88%), Gaps = 8/350 (2%)

Query: 1   MEFLDDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS 60
           M+F ++G  EL+EIQ LEGH D+VWSLAW PT+       + ASCSGDKTVRIW++S S+
Sbjct: 1   MDFSEEG-LELKEIQRLEGHNDKVWSLAWNPTS------TLLASCSGDKTVRIWQRSPST 53

Query: 61  RFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENE 120
             W+CKAVLEE HTRTVRSCAWSPSGKLLATASFDATT IWE +G D+ECV+TLEGHENE
Sbjct: 54  SSWHCKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWELIGDDFECVSTLEGHENE 113

Query: 121 VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS 180
           VKSVSWNASG+LLATC RDKSVWIWEV PGNEFECVSVLQGH QDVKMVQWHP MDVLFS
Sbjct: 114 VKSVSWNASGSLLATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVQWHPIMDVLFS 173

Query: 181 CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI 240
           CSYDNT+K+ WAED DSD+WHCVQT+ ESNNGH+ST+WALSFN +GDK+V+CSDDLT+KI
Sbjct: 174 CSYDNTVKI-WAEDGDSDDWHCVQTLGESNNGHTSTVWALSFNPEGDKMVTCSDDLTVKI 232

Query: 241 WGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDD 300
           W  D   MQ+G+GYA W+HLCT+SGYHDRTIFS HWSREGIIA+GAADD+++FFVESKD 
Sbjct: 233 WDTDSITMQAGEGYAPWKHLCTLSGYHDRTIFSAHWSREGIIATGAADDAIRFFVESKDG 292

Query: 301 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
           L+DGP YK++LKKE+AHDMD+NSVQWS GE RLLASASDDG IKIWELA+
Sbjct: 293 LVDGPLYKLMLKKEQAHDMDINSVQWSSGENRLLASASDDGTIKIWELAS 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822069|ref|XP_002878917.1| EMB1345 [Arabidopsis lyrata subsp. lyrata] gi|297324756|gb|EFH55176.1| EMB1345 [Arabidopsis lyrata subsp. lyrata]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/348 (73%), Positives = 300/348 (86%), Gaps = 3/348 (0%)

Query: 4   LDDGNYELREIQTLEGHTDRVWSLAWKPTAG-VDGVAPVFASCSGDKTVRIWEQSASSRF 62
           L + N EL EIQ LEGHTDRVWS+AW P +   DGV+P+ ASCSGD TVRIWEQS+ SR 
Sbjct: 3   LMEKNLELVEIQKLEGHTDRVWSVAWNPVSSQADGVSPILASCSGDNTVRIWEQSSLSRS 62

Query: 63  WNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK 122
           W CK VLEE HTRTVRSCAWSPSG+LLATASFD TT IW++ G +++C++TLEGHENEVK
Sbjct: 63  WTCKTVLEETHTRTVRSCAWSPSGQLLATASFDGTTGIWKNYGSEFDCISTLEGHENEVK 122

Query: 123 SVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS 182
           SVSWNASG+ LATC RDKSVWIWEV+ GNE++C +VL GH QDVKMVQWHPTMDVLFSCS
Sbjct: 123 SVSWNASGSHLATCSRDKSVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCS 182

Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 242
           YDNTIKVWW+ED D + + CVQT+ ESNNGHSST+W++SFNA GDK+V+CSDDLT+KIWG
Sbjct: 183 YDNTIKVWWSEDDDGE-YQCVQTLGESNNGHSSTVWSISFNAAGDKMVTCSDDLTLKIWG 241

Query: 243 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI 302
            DI RMQSG+ YA W HLCT+SGYHDRTI+S HWSR+ IIASGA D++++ FV+SKDD +
Sbjct: 242 TDIARMQSGEDYAPWIHLCTLSGYHDRTIYSAHWSRDDIIASGAGDNAIRLFVDSKDDSV 301

Query: 303 DGPSYKMLLKKEKAHDMDVNSVQWSPGE-RRLLASASDDGMIKIWELA 349
           DGPSY +LLKK KAH+ DVNSVQWSPGE  RLLASASDDGM+KIW+LA
Sbjct: 302 DGPSYNLLLKKNKAHENDVNSVQWSPGEGNRLLASASDDGMVKIWQLA 349

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064776|ref|XP_002301557.1| predicted protein [Populus trichocarpa] gi|222843283|gb|EEE80830.1| predicted protein [Populus trichocarpa]

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 262/338 (77%), Positives = 295/338 (87%), Gaps = 8/338 (2%)

Query: 11  LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLE 70
           L+EIQTLEGHTDRVWSLAW P       +PVFASCSGDKTVRIWEQ+ S+R W+CKAVLE
Sbjct: 3   LKEIQTLEGHTDRVWSLAWNPATAT---SPVFASCSGDKTVRIWEQTPSTRLWHCKAVLE 59

Query: 71  EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
           E HTRTVRSCAWSPSGKLLATASFDATT IWE++ GD+ECV+TLEGHENEVKSVSWNASG
Sbjct: 60  ETHTRTVRSCAWSPSGKLLATASFDATTSIWENISGDFECVSTLEGHENEVKSVSWNASG 119

Query: 131 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
           + LATC RDK+VWIWEVMPGNEFEC SVLQGH QDVKMV+WHPTMDVLFSCSYDNT+KV 
Sbjct: 120 SFLATCSRDKTVWIWEVMPGNEFECASVLQGHTQDVKMVKWHPTMDVLFSCSYDNTVKV- 178

Query: 191 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS 250
           WAED   D WHC   +    +GHSST+WALSFNA+GD++V+CSDDLT+KIW  D+ RM  
Sbjct: 179 WAEDGTGD-WHCGCFLL---SGHSSTVWALSFNAEGDRMVTCSDDLTLKIWETDVGRMVL 234

Query: 251 GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML 310
           GD +A W HLCT+SGYHDRTIFSVHWSREGIIASGAADD ++FF+E+KD L+DGPSYK+L
Sbjct: 235 GDDHAPWNHLCTLSGYHDRTIFSVHWSREGIIASGAADDGLRFFLENKDGLVDGPSYKLL 294

Query: 311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
           LK+EKAH+MD+NSVQW PGE RLLAS SDDG IKIWEL
Sbjct: 295 LKREKAHNMDINSVQWGPGETRLLASTSDDGKIKIWEL 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401018|ref|NP_565615.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|20197268|gb|AAC31230.2| expressed protein [Arabidopsis thaliana] gi|20260510|gb|AAM13153.1| unknown protein [Arabidopsis thaliana] gi|21553416|gb|AAM62509.1| unknown [Arabidopsis thaliana] gi|28059424|gb|AAO30057.1| unknown protein [Arabidopsis thaliana] gi|330252696|gb|AEC07790.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 256/348 (73%), Positives = 299/348 (85%), Gaps = 3/348 (0%)

Query: 4   LDDGNYELREIQTLEGHTDRVWSLAWKPTAG-VDGVAPVFASCSGDKTVRIWEQSASSRF 62
           L + N EL EIQ LEGHTDRVWS+AW P +   DGV+P+ ASCSGD TVRIWEQS+ SR 
Sbjct: 3   LMEKNLELVEIQKLEGHTDRVWSVAWNPVSSHADGVSPILASCSGDNTVRIWEQSSLSRS 62

Query: 63  WNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK 122
           W CK VLEE HTRTVRSCAWSPSG+LLATASFD TT IW++ G ++EC++TLEGHENEVK
Sbjct: 63  WTCKTVLEETHTRTVRSCAWSPSGQLLATASFDGTTGIWKNYGSEFECISTLEGHENEVK 122

Query: 123 SVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS 182
           SVSWNASG+ LATC RDKSVWIWEV+ GNE++C +VL GH QDVKMVQWHPTMDVLFSCS
Sbjct: 123 SVSWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCS 182

Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 242
           YDNTIKVWW+ED D + + CVQT+ ESNNGHSST+W++SFNA GDK+V+CSDDLT+KIWG
Sbjct: 183 YDNTIKVWWSEDDDGE-YQCVQTLGESNNGHSSTVWSISFNAAGDKMVTCSDDLTLKIWG 241

Query: 243 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI 302
            DI +MQSG+ YA W HLCT+SGYHDRTI+S HWSR+ IIASGA D++++ FV+SK D +
Sbjct: 242 TDIAKMQSGEEYAPWIHLCTLSGYHDRTIYSAHWSRDDIIASGAGDNAIRLFVDSKHDSV 301

Query: 303 DGPSYKMLLKKEKAHDMDVNSVQWSPGE-RRLLASASDDGMIKIWELA 349
           DGPSY +LLKK KAH+ DVNSVQWSPGE  RLLASASDDGM+KIW+LA
Sbjct: 302 DGPSYNLLLKKNKAHENDVNSVQWSPGEGNRLLASASDDGMVKIWQLA 349

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059248|ref|XP_002299788.1| predicted protein [Populus trichocarpa] gi|222847046|gb|EEE84593.1| predicted protein [Populus trichocarpa]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/325 (78%), Positives = 287/325 (88%), Gaps = 2/325 (0%)

Query: 23  RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAW 82
           RVWSLAW P  G     PV ASCSGDKTVRIWEQ+ S+R W+CKAVLEE HTRTVRSCAW
Sbjct: 1   RVWSLAWNPATGTSNNPPVLASCSGDKTVRIWEQTPSNRLWHCKAVLEETHTRTVRSCAW 60

Query: 83  SPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSV 142
           SP GK LATASFDATT IWE++GGD+ECV+TLEGHENEVK VSWNASG+LLATC RDK+V
Sbjct: 61  SPCGKFLATASFDATTAIWENIGGDFECVSTLEGHENEVKCVSWNASGSLLATCSRDKTV 120

Query: 143 WIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHC 202
           WIWEVMPGNEFECVSVLQGH QDVKMV+WHPTMDVLFSCSYDNT+KV WAED   D WHC
Sbjct: 121 WIWEVMPGNEFECVSVLQGHTQDVKMVKWHPTMDVLFSCSYDNTVKV-WAEDGTGD-WHC 178

Query: 203 VQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCT 262
           VQ++ ESNNGHSST+WAL+FNA+G+++V+CSDDLT+KIW  D+  MQSG+   SW HLCT
Sbjct: 179 VQSLGESNNGHSSTVWALAFNAEGNRMVTCSDDLTLKIWETDVGGMQSGNDLVSWNHLCT 238

Query: 263 ISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVN 322
           +SGYHDRTIFSVHWSREGIIASGAADD+++FFVESKD L+DGPSYK+LLK+EKAH+MD+N
Sbjct: 239 LSGYHDRTIFSVHWSREGIIASGAADDALRFFVESKDGLVDGPSYKLLLKREKAHEMDIN 298

Query: 323 SVQWSPGERRLLASASDDGMIKIWE 347
           SVQW PGE  LLAS SDDG IKIWE
Sbjct: 299 SVQWGPGETGLLASTSDDGTIKIWE 323

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511053|ref|XP_003625815.1| hypothetical protein MTR_7g104550 [Medicago truncatula] gi|355500830|gb|AES82033.1| hypothetical protein MTR_7g104550 [Medicago truncatula]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/341 (75%), Positives = 296/341 (86%), Gaps = 1/341 (0%)

Query: 10  ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL 69
           EL+E+Q LEGHTDRVWSL W P  G  G+  VFASCSGDKTVRIWEQ+ S+  ++CKA L
Sbjct: 5   ELKEVQKLEGHTDRVWSLDWNPATGHAGIPLVFASCSGDKTVRIWEQNLSTNLFSCKATL 64

Query: 70  EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 129
           EE HTRTVRSCAWSPSGKLLATASFDATT IWE+VGG++ECV+TLEGHENEVKSVSWNAS
Sbjct: 65  EETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGEFECVSTLEGHENEVKSVSWNAS 124

Query: 130 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 189
           GTLLATC RDKSVWIWEV PGNEFECVSVLQGH QDVKMV+WHPT D+LFSCSYDN IKV
Sbjct: 125 GTLLATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVRWHPTEDILFSCSYDNNIKV 184

Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
            WA++ DSD+W CVQT+ E NNGH+ST+WALSFNA GDK+V+CSDDLT+K+W  +   MQ
Sbjct: 185 -WADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNASGDKMVTCSDDLTLKVWETEHVGMQ 243

Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
           SG G+A WRH+CT++GYHDRTIFSVHWSR GI ASGAADD+++ FVE+ +  +DGP YK+
Sbjct: 244 SGGGFAPWRHVCTLTGYHDRTIFSVHWSRGGIFASGAADDAIRLFVENNESQVDGPLYKL 303

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
           LLKKEKAHDMD+N VQWS GE+ LLASASDDG IK+W+L +
Sbjct: 304 LLKKEKAHDMDINYVQWSHGEKPLLASASDDGTIKVWDLVS 344

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807804|ref|NP_001242180.1| uncharacterized protein LOC100778826 [Glycine max] gi|255637044|gb|ACU18854.1| unknown [Glycine max]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/332 (75%), Positives = 289/332 (87%), Gaps = 1/332 (0%)

Query: 10  ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL 69
           EL+ IQ LEGHTD+VWSLAW PT G  G+  VFASCSGDKTVRIWEQ+ SS  W C AVL
Sbjct: 3   ELKGIQRLEGHTDKVWSLAWNPTTGHAGIPLVFASCSGDKTVRIWEQNLSSGLWACTAVL 62

Query: 70  EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 129
           +E HTRTVRSCAWSPSGKLLATASFDATT IWE+VGGD+ECV+TLEGHENEVK VSWNA+
Sbjct: 63  DETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKCVSWNAA 122

Query: 130 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 189
           GTLLATC RDKSVWIWEV+PGNEFECVSVLQGH+QDVKMV+WHPT D+LFSCSYDN++KV
Sbjct: 123 GTLLATCSRDKSVWIWEVLPGNEFECVSVLQGHSQDVKMVKWHPTEDILFSCSYDNSVKV 182

Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
            WA++ DSD+W CVQT+ E NNGH+ST+WALSFN  GDK+V+CSDDLT+K+W  +    Q
Sbjct: 183 -WADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNVSGDKMVTCSDDLTLKVWETESVGTQ 241

Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
           SG G+A W HLCT+SGYHDRTIFSVHWSREGI ASGAAD++++ FV+  +  + GP YK+
Sbjct: 242 SGGGFAPWTHLCTLSGYHDRTIFSVHWSREGIFASGAADNAIRLFVDDNESQVGGPLYKL 301

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDG 341
           LLKKEKAHDMD+NSVQWSPGE+ +LASASDDG
Sbjct: 302 LLKKEKAHDMDINSVQWSPGEKPVLASASDDG 333

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79323100|ref|NP_001031421.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|330252697|gb|AEC07791.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/333 (72%), Positives = 283/333 (84%), Gaps = 2/333 (0%)

Query: 4   LDDGNYELREIQTLEGHTDRVWSLAWKPTAG-VDGVAPVFASCSGDKTVRIWEQSASSRF 62
           L + N EL EIQ LEGHTDRVWS+AW P +   DGV+P+ ASCSGD TVRIWEQS+ SR 
Sbjct: 3   LMEKNLELVEIQKLEGHTDRVWSVAWNPVSSHADGVSPILASCSGDNTVRIWEQSSLSRS 62

Query: 63  WNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK 122
           W CK VLEE HTRTVRSCAWSPSG+LLATASFD TT IW++ G ++EC++TLEGHENEVK
Sbjct: 63  WTCKTVLEETHTRTVRSCAWSPSGQLLATASFDGTTGIWKNYGSEFECISTLEGHENEVK 122

Query: 123 SVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS 182
           SVSWNASG+ LATC RDKSVWIWEV+ GNE++C +VL GH QDVKMVQWHPTMDVLFSCS
Sbjct: 123 SVSWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCS 182

Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 242
           YDNTIKVWW+ED D + + CVQT+ ESNNGHSST+W++SFNA GDK+V+CSDDLT+KIWG
Sbjct: 183 YDNTIKVWWSEDDDGE-YQCVQTLGESNNGHSSTVWSISFNAAGDKMVTCSDDLTLKIWG 241

Query: 243 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI 302
            DI +MQSG+ YA W HLCT+SGYHDRTI+S HWSR+ IIASGA D++++ FV+SK D +
Sbjct: 242 TDIAKMQSGEEYAPWIHLCTLSGYHDRTIYSAHWSRDDIIASGAGDNAIRLFVDSKHDSV 301

Query: 303 DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA 335
           DGPSY +LLKK KAH+ DVNSVQWSPG R  +A
Sbjct: 302 DGPSYNLLLKKNKAHENDVNSVQWSPGVREPVA 334

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
TAIR|locus:2057381	352	emb1345 "AT2G26060" [Arabidops	0.980	0.980	0.735	7.9e-149
TAIR|locus:2123752	328	AT4G32990 "AT4G32990" [Arabido	0.730	0.783	0.697	3.9e-125
UNIPROTKB|A7RWD2	327	v1g226592 "Probable cytosolic	0.894	0.963	0.519	1.2e-97
UNIPROTKB|B4GDM7	335	Ciao1 "Probable cytosolic iron	0.914	0.961	0.511	3.4e-93
UNIPROTKB|Q292E8	335	Ciao1 "Probable cytosolic iron	0.909	0.955	0.511	1.1e-92
UNIPROTKB|B3NQR5	335	Ciao1 "Probable cytosolic iron	0.909	0.955	0.517	6.3e-92
FB|FBgn0033972	335	Ciao1 "Ciao1" [Drosophila mela	0.909	0.955	0.511	8.1e-92
UNIPROTKB|B4P7Q3	335	Ciao1 "Probable cytosolic iron	0.909	0.955	0.511	1.3e-91
UNIPROTKB|B4QFZ8	335	Ciao1 "Probable cytosolic iron	0.911	0.958	0.507	2.7e-91
UNIPROTKB|B4HRQ6	335	Ciao1 "Probable cytosolic iron	0.911	0.958	0.507	3.5e-91

TAIR|locus:2057381 emb1345 "AT2G26060" [Arabidopsis thaliana (taxid:3702)]

 Score = 1453 (516.5 bits), Expect = 7.9e-149, P = 7.9e-149
 Identities = 256/348 (73%), Positives = 299/348 (85%)

Query:     4 LDDGNYELREIQTLEGHTDRVWSLAWKPTAG-VDGVAPVFASCSGDKTVRIWEQSASSRF 62
             L + N EL EIQ LEGHTDRVWS+AW P +   DGV+P+ ASCSGD TVRIWEQS+ SR 
Sbjct:     3 LMEKNLELVEIQKLEGHTDRVWSVAWNPVSSHADGVSPILASCSGDNTVRIWEQSSLSRS 62

Query:    63 WNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK 122
             W CK VLEE HTRTVRSCAWSPSG+LLATASFD TT IW++ G ++EC++TLEGHENEVK
Sbjct:    63 WTCKTVLEETHTRTVRSCAWSPSGQLLATASFDGTTGIWKNYGSEFECISTLEGHENEVK 122

Query:   123 SVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS 182
             SVSWNASG+ LATC RDKSVWIWEV+ GNE++C +VL GH QDVKMVQWHPTMDVLFSCS
Sbjct:   123 SVSWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCS 182

Query:   183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 242
             YDNTIKVWW+ED D + + CVQT+ ESNNGHSST+W++SFNA GDK+V+CSDDLT+KIWG
Sbjct:   183 YDNTIKVWWSEDDDGE-YQCVQTLGESNNGHSSTVWSISFNAAGDKMVTCSDDLTLKIWG 241

Query:   243 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI 302
              DI +MQSG+ YA W HLCT+SGYHDRTI+S HWSR+ IIASGA D++++ FV+SK D +
Sbjct:   242 TDIAKMQSGEEYAPWIHLCTLSGYHDRTIYSAHWSRDDIIASGAGDNAIRLFVDSKHDSV 301

Query:   303 DGPSYKMLLKKEKAHDMDVNSVQWSPGE-RRLLASASDDGMIKIWELA 349
             DGPSY +LLKK KAH+ DVNSVQWSPGE  RLLASASDDGM+KIW+LA
Sbjct:   302 DGPSYNLLLKKNKAHENDVNSVQWSPGEGNRLLASASDDGMVKIWQLA 349

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

TAIR|locus:2123752 AT4G32990 "AT4G32990" [Arabidopsis thaliana (taxid:3702)]

 Score = 1047 (373.6 bits), Expect = 3.9e-125, Sum P(2) = 3.9e-125
 Identities = 182/261 (69%), Positives = 224/261 (85%)

Query:    93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP--G 150
             SFD  TC+WE+   D E V+ L GHE+EVKSVSWNASG+LLATCGRDKSVWIWE+ P   
Sbjct:    67 SFDGNTCVWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPEED 126

Query:   151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN 210
             +EF+ ++VL GH++DVKMV WHPTMDVLFSCSYDNTIK+W +ED D D ++CVQT+SE N
Sbjct:   127 DEFDTIAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGD-YNCVQTLSELN 185

Query:   211 NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 270
             NGHSST+W++SFNA GDK+V+CSDDL +KIW  DI+RMQSG+GY  W H+CT+SG+HDRT
Sbjct:   186 NGHSSTVWSISFNAAGDKMVTCSDDLAVKIWKTDISRMQSGEGYVPWTHVCTLSGFHDRT 245

Query:   271 IFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG- 329
             I+SVHWSR+G+IASGA DD++Q FV+S  D +DGPSYK+L+KKEKAH+MDVNSVQW+P  
Sbjct:   246 IYSVHWSRDGVIASGAGDDTIQLFVDSDSDSVDGPSYKLLVKKEKAHEMDVNSVQWAPDK 305

Query:   330 ERRLLASASDDGMIKIWELAN 350
             E RLLASASDD M+KIW+LA+
Sbjct:   306 ESRLLASASDDKMVKIWKLAS 326

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A7RWD2 v1g226592 "Probable cytosolic iron-sulfur protein assembly protein" [Nematostella vectensis (taxid:45351)]

 Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
 Identities = 174/335 (51%), Positives = 231/335 (68%)

Query:    17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRT 76
             + GH DRVWS+AW P    +G   V ASC GDKT+RIW +      W CK +LE+ H RT
Sbjct:     1 MTGHEDRVWSVAWSP----NGF--VLASCGGDKTIRIWGKEGDK--WICKTILEDGHQRT 52

Query:    77 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC 136
             +RS  WSP G  LA+ASFDATTCIW+   G++EC ATLEGHENEVKSV W+ SG+LLATC
Sbjct:    53 IRSLGWSPCGTFLASASFDATTCIWDQKSGEFECNATLEGHENEVKSVDWSVSGSLLATC 112

Query:   137 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD 196
             GRDKSVWIWEV   +E+EC SV+  H QDVK V WHPT ++L SCSYD+TIK++     D
Sbjct:   113 GRDKSVWIWEVQEDDEYECASVIHSHTQDVKKVVWHPTKEILASCSYDDTIKLY---KED 169

Query:   197 SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG---DG 253
              D+W C  T+     GH ST+W++SF+  GD++VSCSDD T++IW +     Q G    G
Sbjct:   170 EDDWSCCDTLE----GHESTVWSISFDGSGDRIVSCSDDKTVRIWKSYPPGNQEGVVVSG 225

Query:   254 -YASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKMLL 311
              +  W+ +C +SGYHDRTI+ VHWS+  G+IA+ + DD ++ F E  +   + PS++++ 
Sbjct:   226 KHTKWKCVCVLSGYHDRTIYDVHWSKVSGLIATASGDDCIRIFKEDTNSDRNQPSFQLVA 285

Query:   312 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 346
              + KAH MDVNS+ W P +  +LA+ SDDG +K+W
Sbjct:   286 TQRKAHSMDVNSICWHPKDENILATCSDDGTVKLW 320

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

UNIPROTKB|B4GDM7 Ciao1 "Probable cytosolic iron-sulfur protein assembly protein Ciao1" [Drosophila persimilis (taxid:7234)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 174/340 (51%), Positives = 225/340 (66%)

Query:    16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
             TL+GH  R+W +AW P   V      FASC  DK +R+W  S S   W+ K +L + H R
Sbjct:     9 TLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRVW--SLSGNTWSTKTILSDGHKR 60

Query:    76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
             T+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLAT
Sbjct:    61 TIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLAT 120

Query:   136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 195
             C RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT D+L S SYDNTIK++     
Sbjct:   121 CSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVWHPTKDILASASYDNTIKMFAESQL 180

Query:   196 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG---- 251
             DSD W C  T+S     H+ST+W++ F+A+GD+LVSCSDD T+KIW A      +G    
Sbjct:   181 DSD-WDCTATLSS----HTSTVWSIDFDAEGDRLVSCSDDKTLKIWRAYHPGNDAGIATP 235

Query:   252 DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKML 310
             D  + W+ +CT+SG H R I+ V W +  G+IA+G  DD ++ F E+ D   D P+++ L
Sbjct:   236 DKQSVWKCVCTLSGQHSRAIYDVSWCKLTGLIATGCGDDGIRIFKETSDSKRDEPTFEQL 295

Query:   311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
               +E AH+ DVN+V+W+P     L S SDDG IKIW++A+
Sbjct:   296 TAEETAHEQDVNAVEWNPAVAGQLISCSDDGTIKIWKVAD 335

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

UNIPROTKB|Q292E8 Ciao1 "Probable cytosolic iron-sulfur protein assembly protein Ciao1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 173/338 (51%), Positives = 223/338 (65%)

Query:    16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
             TL+GH  R+W +AW P   V      FASC  DK +R+W  S S   W+ K +L + H R
Sbjct:     9 TLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRVW--SLSGNTWSTKTILSDGHKR 60

Query:    76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
             T+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLAT
Sbjct:    61 TIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLAT 120

Query:   136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 195
             C RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT D+L S SYDNTIK++     
Sbjct:   121 CSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVWHPTKDILASASYDNTIKMFAESQL 180

Query:   196 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG---- 251
             DSD W C  T+S     H+ST+W++ F+A+GD+LVSCSDD T+KIW A      +G    
Sbjct:   181 DSD-WDCTATLSS----HTSTVWSIDFDAEGDRLVSCSDDKTLKIWRAYHPGNDAGIATP 235

Query:   252 DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKML 310
             D  + W+ +CT+SG H R I+ V W +  G+IA+G  DD ++ F E+ D   D P+++ L
Sbjct:   236 DKQSVWKCVCTLSGQHSRAIYDVSWCKLTGLIATGCGDDGIRIFKETSDSKRDEPTFEQL 295

Query:   311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
               +E AH+ DVN+V+W+P     L S SDDG IKIW++
Sbjct:   296 TAEETAHEQDVNAVEWNPAVAGQLISCSDDGTIKIWKV 333

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

UNIPROTKB|B3NQR5 Ciao1 "Probable cytosolic iron-sulfur protein assembly protein Ciao1" [Drosophila erecta (taxid:7220)]

 Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
 Identities = 175/338 (51%), Positives = 222/338 (65%)

Query:    16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
             TL+GH  R+W +AW P   V      FASC  DK +RIW  + S+  W+ K +L + H R
Sbjct:     9 TLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRIWSLTGST--WSTKTILSDGHKR 60

Query:    76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
             T+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLAT
Sbjct:    61 TIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLAT 120

Query:   136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 195
             C RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT +VL S SYDNTIK++ AED 
Sbjct:   121 CSRDKSVWIWEVAGDDEFECAAVLNSHTQDVKRVVWHPTKEVLASASYDNTIKMY-AEDP 179

Query:   196 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG---- 251
               ++W C  T++     H+STIW + F+A G++LVSCSDD TIKIW A      +G    
Sbjct:   180 VDNDWDCTATLTS----HTSTIWGIDFDADGERLVSCSDDTTIKIWKAYHPGNSAGVATP 235

Query:   252 DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKML 310
             D    W+ +CT+SG H R I+ V W +  G+IA+   DD ++ F E+ D   D P+++ L
Sbjct:   236 DQQTVWKCVCTLSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTFEQL 295

Query:   311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
               +E AHD DVNSVQW+P     L S SDDG IKIW++
Sbjct:   296 TAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKV 333

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

FB|FBgn0033972 Ciao1 "Ciao1" [Drosophila melanogaster (taxid:7227)]

 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 173/338 (51%), Positives = 221/338 (65%)

Query:    16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
             TL+GH  R+W +AW P   V      FASC  DK +RIW  S +   W+ K +L + H R
Sbjct:     9 TLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRIW--SLTGNTWSTKTILSDGHKR 60

Query:    76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
             T+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLAT
Sbjct:    61 TIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLAT 120

Query:   136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 195
             C RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT D+L S SYDNTIK++  E  
Sbjct:   121 CSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDILASASYDNTIKMFAEEPI 180

Query:   196 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRMQSG 251
             D+D W C  T++     H+ST+W + F+A G++LVSCSDD TIKIW A    +   + + 
Sbjct:   181 DND-WDCTATLTS----HTSTVWGIDFDADGERLVSCSDDTTIKIWRAYHPGNTAGVATP 235

Query:   252 DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKML 310
             D    W+ +CT+SG H R I+ V W +  G+IA+   DD ++ F ES D   D P+++ +
Sbjct:   236 DQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKESSDSKPDEPTFEQI 295

Query:   311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
               +E AHD DVNSVQW+P     L S SDDG IKIW++
Sbjct:   296 TAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKV 333

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|B4P7Q3 Ciao1 "Probable cytosolic iron-sulfur protein assembly protein Ciao1" [Drosophila yakuba (taxid:7245)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 173/338 (51%), Positives = 220/338 (65%)

Query:    16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
             TL+GH  R+W +AW P   V      FASC  DK +RIW  S +   W+ K +L + H R
Sbjct:     9 TLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRIW--SLTGNTWSTKTILSDGHKR 60

Query:    76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
             T+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLAT
Sbjct:    61 TIREIQWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLAT 120

Query:   136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 195
             C RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT ++L S SYDNTIK++  E  
Sbjct:   121 CSRDKSVWIWEVAGDDEFECAAVLNSHTQDVKRVVWHPTKEILASASYDNTIKMYAEEPI 180

Query:   196 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG---- 251
             D+D W C  T++     H+STIW + F+A G++LVSCSDD T+KIW A      +G    
Sbjct:   181 DND-WDCTATLTS----HTSTIWGIDFDADGERLVSCSDDTTVKIWRAYHPGNSAGVATP 235

Query:   252 DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKML 310
             D    W+ +CT+SG H R I+ V W +  G+IA+   DD ++ F E+ D   D P+++ L
Sbjct:   236 DQQTVWKCVCTLSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTFEQL 295

Query:   311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
               +E AHD DVNSVQW+P     L S SDDG IKIW++
Sbjct:   296 TAEESAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKV 333

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

UNIPROTKB|B4QFZ8 Ciao1 "Probable cytosolic iron-sulfur protein assembly protein Ciao1" [Drosophila simulans (taxid:7240)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 172/339 (50%), Positives = 222/339 (65%)

Query:    16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
             TL+GH  R+W +AW P   V      FASC  DK +RIW  S +   W+ K +L + H R
Sbjct:     9 TLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRIW--SLTGNTWSTKTILSDGHKR 60

Query:    76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
             T+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLAT
Sbjct:    61 TIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLAT 120

Query:   136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 195
             C RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT DVL S SYDNTIK++  E  
Sbjct:   121 CSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDVLASASYDNTIKMFAEEPI 180

Query:   196 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRMQSG 251
             D+D W C  T++     H+ST+W + F+A G++LVSCSDD TIKIW A    +   + + 
Sbjct:   181 DND-WDCTATLTS----HTSTVWGIDFDADGERLVSCSDDTTIKIWKAYHPGNTAGVATP 235

Query:   252 DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKML 310
             +    W+ +CT+SG H R I+ V W +  G+IA+   DD ++ F E+ D   D P+++ +
Sbjct:   236 EQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTFEQI 295

Query:   311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 349
               +E AHD DVNSVQW+P     L S SDDG IKIW+++
Sbjct:   296 TAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKVS 334

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

UNIPROTKB|B4HRQ6 Ciao1 "Probable cytosolic iron-sulfur protein assembly protein Ciao1" [Drosophila sechellia (taxid:7238)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 172/339 (50%), Positives = 221/339 (65%)

Query:    16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
             TL+GH  R+W +AW P   V      FASC  DK +RIW  S +   W  K +L + H R
Sbjct:     9 TLQGHKGRIWGVAWHPKGNV------FASCGEDKAIRIW--SLTGNTWGTKTILSDGHKR 60

Query:    76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
             T+R   WSP G+ LA+ASFDATT IW    G++EC ATLEGHENEVKSVSW+ SG LLAT
Sbjct:    61 TIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWSRSGGLLAT 120

Query:   136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 195
             C RDKSVWIWEV   +EFEC +VL  H QDVK V WHPT DVL S SYDNTIK++  E  
Sbjct:   121 CSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKDVLASASYDNTIKMFAEEPI 180

Query:   196 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA----DITRMQSG 251
             D+D W C  T++     H+ST+W + F+A G++LVSCSDD TIKIW A    +   + + 
Sbjct:   181 DND-WDCTATLTS----HTSTVWGIDFDADGERLVSCSDDTTIKIWRAYHPGNTAGVATP 235

Query:   252 DGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKML 310
             +    W+ +CT+SG H R I+ V W +  G+IA+   DD ++ F E+ D   D P+++ +
Sbjct:   236 EQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDSKPDEPTFEQI 295

Query:   311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 349
               +E AHD DVNSVQW+P     L S SDDG IKIW+++
Sbjct:   296 TAEEGAHDQDVNSVQWNPVVAGQLISCSDDGTIKIWKVS 334

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7PS24	CIAO1_ANOGA	No assigned EC number	0.4571	0.9318	0.9618	yes	no
Q5M7T1	CIAO1_RAT	No assigned EC number	0.4807	0.8977	0.9321	yes	no
B3MC74	CIAO1_DROAN	No assigned EC number	0.5014	0.9119	0.9582	N/A	no
Q292E8	CIAO1_DROPS	No assigned EC number	0.5073	0.9119	0.9582	yes	no
Q7K1Y4	CIAO1_DROME	No assigned EC number	0.5103	0.9119	0.9582	yes	no
Q75C26	CIAO1_ASHGO	No assigned EC number	0.3631	0.8892	0.9542	yes	no
B4QFZ8	CIAO1_DROSI	No assigned EC number	0.5058	0.9147	0.9611	N/A	no
Q6CMA2	CIAO1_KLULA	No assigned EC number	0.3541	0.8863	0.9369	yes	no
Q99KN2	CIAO1_MOUSE	No assigned EC number	0.4777	0.8977	0.9321	yes	no
B4HRQ6	CIAO1_DROSE	No assigned EC number	0.5058	0.9147	0.9611	N/A	no
Q6BIR9	CIAO1_DEBHA	No assigned EC number	0.3227	0.9090	0.8121	yes	no
B4LJT7	CIAO1_DROVI	No assigned EC number	0.5044	0.9005	0.9577	N/A	no
B4MY77	CIAO1_DROWI	No assigned EC number	0.5044	0.9119	0.9582	N/A	no
Q55DA2	CIAO1_DICDI	No assigned EC number	0.4380	0.9034	0.9549	yes	no
Q05583	CIAO1_YEAST	No assigned EC number	0.3583	0.8778	0.9363	yes	no
B4GDM7	CIAO1_DROPE	No assigned EC number	0.5073	0.9176	0.9641	N/A	no
O76071	CIAO1_HUMAN	No assigned EC number	0.4807	0.8977	0.9321	yes	no
B9WHJ2	CIAO1_CANDC	No assigned EC number	0.3392	0.8977	0.8315	yes	no
B4P7Q3	CIAO1_DROYA	No assigned EC number	0.5073	0.9119	0.9582	N/A	no
Q9XW12	CIAO1_CAEEL	No assigned EC number	0.3657	0.9147	0.9554	yes	no
A3LVM1	CIAO1_PICST	No assigned EC number	0.3431	0.9005	0.8781	yes	no
Q6CBI8	CIAO1_YARLI	No assigned EC number	0.3994	0.8863	0.9397	yes	no
A7RWD2	CIAO1_NEMVE	No assigned EC number	0.5103	0.9005	0.9694	N/A	no
Q28DW0	CIAO1_XENTR	No assigned EC number	0.4660	0.9147	0.9669	yes	no
B3NQR5	CIAO1_DROER	No assigned EC number	0.5132	0.9119	0.9582	N/A	no
B4KTK4	CIAO1_DROMO	No assigned EC number	0.5103	0.9005	0.9577	N/A	no
Q6P0D9	CIAO1_DANRE	No assigned EC number	0.4782	0.9090	0.9696	yes	no
Q32PJ6	CIAO1_BOVIN	No assigned EC number	0.4882	0.9062	0.9410	yes	no
Q6FJ73	CIAO1_CANGA	No assigned EC number	0.3682	0.8920	0.9317	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021618001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (344 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021438001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (120 aa)					•		•		0.637
	GSVIVG00023613001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (542 aa)			•						0.496
	GSVIVG00001478001	SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (379 aa)			•						0.488
	GSVIVG00025117001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (350 aa)			•						0.487
	GSVIVG00003091001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (250 aa)			•						0.482
	GSVIVG00017915001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (459 aa)			•						0.481
	GSVIVG00003267001	SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (283 aa)			•						0.449
	GSVIVG00018072001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (326 aa)			•						0.443
	GSVIVG00038827001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (332 aa)			•						0.422

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	352
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-65
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-48
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-31
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-08
smart00320	40	smart00320, WD40, WD40 repeats	9e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-07
smart00320	40	smart00320, WD40, WD40 repeats	9e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	4e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
smart00320	40	smart00320, WD40, WD40 repeats	6e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	8e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  206 bits (527), Expect = 8e-65
 Identities = 109/336 (32%), Positives = 171/336 (50%), Gaps = 48/336 (14%)

Query: 13  EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
             +TL+GHT  V  +A+ P         + A+ SGD T+++W+             L+  
Sbjct: 1   LRRTLKGHTGGVTCVAFSP------DGKLLATGSGDGTIKVWDLETGE----LLRTLKG- 49

Query: 73  HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 132
           HT  VR  A S  G  LA+ S D T  +W+   G  ECV TL GH + V SV+++  G +
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGRI 107

Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 192
           L++  RDK++ +W+V      +C++ L+GH   V  V + P    + S S D TIK+W  
Sbjct: 108 LSSSSRDKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW-- 162

Query: 193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 252
              D     CV T++    GH+  + +++F+  G+KL+S S D TIK+W           
Sbjct: 163 ---DLRTGKCVATLT----GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS-------- 207

Query: 253 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 311
              + + L T+ G H+  + SV +S +G ++ASG+ D +++ +     DL  G   + L 
Sbjct: 208 ---TGKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVW-----DLRTGECVQTL- 257

Query: 312 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
                H   V S+ WSP  +R LAS S DG I+IW+
Sbjct: 258 ---SGHTNSVTSLAWSPDGKR-LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  164 bits (416), Expect = 3e-48
 Identities = 79/230 (34%), Positives = 123/230 (53%), Gaps = 25/230 (10%)

Query: 12  REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE 71
             ++TL GHT  V S+A+ P         + +S S DKT+++W+         C   L  
Sbjct: 84  ECVRTLTGHTSYVSSVAFSPD------GRILSSSSRDKTIKVWDVETG----KCLTTLRG 133

Query: 72  MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 131
            HT  V S A+SP G  +A++S D T  +W+   G  +CVATL GH  EV SV+++  G 
Sbjct: 134 -HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG--KCVATLTGHTGEVNSVAFSPDGE 190

Query: 132 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 191
            L +   D ++ +W++   +  +C+  L+GH   V  V + P   +L S S D TI+VW 
Sbjct: 191 KLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW- 246

Query: 192 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
               D     CVQT+S    GH++++ +L+++  G +L S S D TI+IW
Sbjct: 247 ----DLRTGECVQTLS----GHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  121 bits (303), Expect = 7e-31
 Identities = 96/349 (27%), Positives = 162/349 (46%), Gaps = 46/349 (13%)

Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           +        L GH D + S+A+ P         +  S S D T+++W+     +      
Sbjct: 52  SLPDLSSLLLRGHEDSITSIAFSPDG------ELLLSGSSDGTIKLWDLDNGEK---LIK 102

Query: 68  VLEEMHTRTVRSCAW-SPSGKLLATA--SFDATTCIWEDVGGDYECVATLEGHENEVKSV 124
            LE +H  +V   A  SP G  +  A  S D T  +W D+    + + TLEGH   V S+
Sbjct: 103 SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW-DLSTPGKLIRTLEGHSESVTSL 161

Query: 125 SWNASGTLLATCGR-DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCS 182
           +++  G LLA+    D ++ +W++  G   + +S L GH   V  + + P   +L  S S
Sbjct: 162 AFSPDGKLLASGSSLDGTIKLWDLRTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218

Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 242
            D TI++W     D         +  + +GHS ++ + SF+  G  L S S D TI++W 
Sbjct: 219 SDGTIRLW-----DLSTGKL---LRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWD 269

Query: 243 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDL 301
              +             L T+SG H  ++ SV +S +G ++ASG++D +V+ +      L
Sbjct: 270 LRSSS----------SLLRTLSG-HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318

Query: 302 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
           +            K H+  V+S+ +SP    L++  SDDG I++W+L  
Sbjct: 319 LS-------SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  115 bits (287), Expect = 1e-28
 Identities = 97/343 (28%), Positives = 161/343 (46%), Gaps = 45/343 (13%)

Query: 12  REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE 71
           + I+TLEGH++ V SLA+ P   +     + +  S D T+++W      R     + L  
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKL-----LASGSSLDGTIKLW----DLRTGKPLSTLAG 196

Query: 72  MHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
            HT  V S A+SP G  L+A+ S D T  +W D+       +TL GH + V S S++  G
Sbjct: 197 -HTDPVSSLAFSPDGGLLIASGSSDGTIRLW-DLSTGKLLRSTLSGHSDSVVS-SFSPDG 253

Query: 131 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
           +LLA+   D ++ +W++   +    +  L GH+  V  V + P   +L S S D T+++W
Sbjct: 254 SLLASGSSDGTIRLWDL--RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311

Query: 191 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGADITRMQ 249
                  D        S +  GH   + +LSF+  G  LV   SDD TI++W        
Sbjct: 312 -------DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD------- 357

Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
                 + + L T+ G+ +    S       +++SG+ D +V+ +  S   L+       
Sbjct: 358 ----LRTGKPLKTLEGHSNVLSVSFSPD-GRVVSSGSTDGTVRLWDLSTGSLL------- 405

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL 352
             +    H   V S+ +SP + + LAS S D  I++W+L  +L
Sbjct: 406 --RNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSL 445

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  105 bits (263), Expect = 4e-26
 Identities = 49/136 (36%), Positives = 68/136 (50%), Gaps = 13/136 (9%)

Query: 11  LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLE 70
            + + TL GHT  V S+A+ P            S S D T+++W+ S       C   L 
Sbjct: 167 GKCVATLTGHTGEVNSVAFSPDGE------KLLSSSSDGTIKLWDLSTGK----CLGTLR 216

Query: 71  EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
             H   V S A+SP G LLA+ S D T  +W+   G  ECV TL GH N V S++W+  G
Sbjct: 217 G-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG--ECVQTLSGHTNSVTSLAWSPDG 273

Query: 131 TLLATCGRDKSVWIWE 146
             LA+   D ++ IW+
Sbjct: 274 KRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 95.5 bits (238), Expect = 2e-22
 Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 32/197 (16%)

Query: 155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS 214
               L+GH   V  V + P   +L + S D TIKVW     D +    ++T      GH+
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVW-----DLETGELLRT----LKGHT 51

Query: 215 STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 274
             +  ++ +A G  L S S D TI++W  +               + T++G H   + SV
Sbjct: 52  GPVRDVAASADGTYLASGSSDKTIRLWDLETGEC-----------VRTLTG-HTSYVSSV 99

Query: 275 HWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRL 333
            +S +G I++S + D +++ +        D  + K  L   + H   VNSV +SP     
Sbjct: 100 AFSPDGRILSSSSRDKTIKVW--------DVETGK-CLTTLRGHTDWVNSVAFSPDGT-F 149

Query: 334 LASASDDGMIKIWELAN 350
           +AS+S DG IK+W+L  
Sbjct: 150 VASSSQDGTIKLWDLRT 166

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 74.0 bits (180), Expect = 1e-14
 Identities = 66/246 (26%), Positives = 119/246 (48%), Gaps = 39/246 (15%)

Query: 113 TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD--VKMVQ 170
            L GHE+ + S++++  G LL +   D ++ +W++   N  + +  L+G       K+  
Sbjct: 60  LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDL--DNGEKLIKSLEGLHDSSVSKLAL 117

Query: 171 WHPTMDVLFSC--SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
             P  + +     S D T+K+W      S     ++T+     GHS ++ +L+F+  G  
Sbjct: 118 SSPDGNSILLASSSLDGTVKLW----DLSTPGKLIRTL----EGHSESVTSLAFSPDGKL 169

Query: 229 LVSCSD-DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASG 285
           L S S  D TIK+W              + + L T++G H   + S+ +S +G  +IASG
Sbjct: 170 LASGSSLDGTIKLWDLR-----------TGKPLSTLAG-HTDPVSSLAFSPDGGLLIASG 217

Query: 286 AADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKI 345
           ++D +++ +        D  + K+L      H   V S  +SP +  LLAS S DG I++
Sbjct: 218 SSDGTIRLW--------DLSTGKLLRSTLSGHSDSVVSS-FSP-DGSLLASGSSDGTIRL 267

Query: 346 WELANT 351
           W+L ++
Sbjct: 268 WDLRSS 273

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.5 bits (132), Expect = 2e-08
 Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 22/178 (12%)

Query: 178 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT 237
                  +   +                 S    GH  +I +++F+  G+ L+S S D T
Sbjct: 29  SLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGT 88

Query: 238 IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW----SREGIIASGAADDSVQF 293
           IK+W  D               + ++ G HD ++  +          ++AS + D +V+ 
Sbjct: 89  IKLWDLDNGEKL----------IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138

Query: 294 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 351
           +        D  +   L++  + H   V S+ +SP  + L + +S DG IK+W+L   
Sbjct: 139 W--------DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.9 bits (128), Expect = 5e-08
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 13/143 (9%)

Query: 5   DDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWN 64
           D    +L    TL+GH   V SL++ P   +     + +  S D T+R+W+         
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSL-----LVSGGSDDGTIRLWDLRTG----- 361

Query: 65  CKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSV 124
            K +        V S ++SP G+++++ S D T  +W+   G    +  L+GH + V S+
Sbjct: 362 -KPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG--SLLRNLDGHTSRVTSL 418

Query: 125 SWNASGTLLATCGRDKSVWIWEV 147
            ++  G  LA+   D ++ +W++
Sbjct: 419 DFSPDGKSLASGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE 146
           E + TL+GH   V SV+++  G  LA+   D ++ +W+
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIW 145
           + + TL+GH   V SV+++  G LLA+   D +V +W
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.6 bits (106), Expect = 9e-07
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 153 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
            E +  L+GH   V  V + P    L S S D TIK+W
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 153 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
            + +  L+GH   V  V + P  ++L S S D T++VW
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 6/41 (14%)

Query: 14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIW 54
          ++TL+GHT  V S+A+ P         + AS S D TVR+W
Sbjct: 4  LRTLKGHTGPVTSVAFSPDG------NLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWE 55
            ++TL+GHT  V S+A+ P           AS S D T+++W+
Sbjct: 3  ELLKTLKGHTGPVTSVAFSPD------GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 199 NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
           +   ++T+     GH+  + +++F+  G  L S SDD TIK+W
Sbjct: 1   SGELLKTLK----GHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 63  WNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW 101
                 L+  HT  V S A+SP G LLA+ S D T  +W
Sbjct: 1   GKLLRTLKG-HTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 63  WNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE 102
                 L+  HT  V S A+SP GK LA+ S D T  +W+
Sbjct: 2   GELLKTLKG-HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.3 bits (92), Expect = 8e-05
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 200 WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
              ++T+     GH+  + +++F+  G+ L S SDD T+++W
Sbjct: 1   GKLLRTLK----GHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 21/129 (16%)

Query: 17  LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM---- 72
           L+GHT  +  L + P       + + AS S D T+R+WE   +    + K + +      
Sbjct: 70  LKGHTSSILDLQFNPC-----FSEILASGSEDLTIRVWEIPHNDE--SVKEIKDPQCILK 122

Query: 73  -HTRTVRSCAWSPSGK-LLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSVSWNA 128
            H + +    W+P    ++ ++ FD+   IW  E+    ++          ++ S+ WN 
Sbjct: 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-----KKLSSLKWNI 177

Query: 129 SGTLLA-TC 136
            G LL+ TC
Sbjct: 178 KGNLLSGTC 186

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 9e-05
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 346
           LL+  K H   V SV +SP +  LLAS SDDG +++W
Sbjct: 3   LLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 24/94 (25%), Positives = 51/94 (54%), Gaps = 13/94 (13%)

Query: 111 VATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVS-------VLQGH 162
           V  L+GH + +  + +N     +LA+   D ++ +WE+ P N+ E V        +L+GH
Sbjct: 67  VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEI-PHND-ESVKEIKDPQCILKGH 124

Query: 163 AQDVKMVQWHPTMD--VLFSCSYDNTIKVWWAED 194
            + + ++ W+P M+  ++ S  +D+ + +W  E+
Sbjct: 125 KKKISIIDWNP-MNYYIMCSSGFDSFVNIWDIEN 157

Length = 568

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 25/135 (18%)

Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           +    +          V S+++ P         V +S S D TVR+W+ S  S   N   
Sbjct: 357 DLRTGKPLKTLEGHSNVLSVSFSP------DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410

Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                HT  V S  +SP GK LA+ S D T  +W+               +  +KSVS++
Sbjct: 411 -----HTSRVTSLDFSPDGKSLASGSSDNTIRLWD--------------LKTSLKSVSFS 451

Query: 128 ASGTLLATCGRDKSV 142
             G +LA+   D SV
Sbjct: 452 PDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 315 KAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
           K H   V SV +SP + + LAS SDDG IK+W+
Sbjct: 9   KGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 15/131 (11%)

Query: 116 GHENEVKSVSWNA-SGTLLATCGRDKSVWIW----EVMPGNEFECVSVLQGHAQDVKMVQ 170
           G E  +  V++N      L T   D ++  W    E +  N  + +  LQGH + V +V 
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 171 WHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 229
           +HP+ M+VL S   D  + VW     D +    V+ I      HS  I +L +N  G  L
Sbjct: 133 FHPSAMNVLASAGADMVVNVW-----DVERGKAVEVIK----CHSDQITSLEWNLDGSLL 183

Query: 230 VSCSDDLTIKI 240
            + S D  + I
Sbjct: 184 CTTSKDKKLNI 194

Length = 493

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 46  SGDKTVRIWEQSASSRFWNCKAVLEEM--HTRTVRSCAWSPSGK-LLATASFDATTCIWE 102
           S D T+  W         N    +  +  HT+ V   ++ PS   +LA+A  D    +W+
Sbjct: 95  SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154

Query: 103 DVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWI 144
              G  + V  ++ H +++ S+ WN  G+LL T  +DK + I
Sbjct: 155 VERG--KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.98
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.98
KOG2096	420	consensus WD40 repeat protein [General function pr	99.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.98
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.89
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG4227	609	consensus WD40 repeat protein [General function pr	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.87
KOG1539	910	consensus WD repeat protein [General function pred	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.85
KOG0639	705	consensus Transducin-like enhancer of split protei	99.85
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.83
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.82
KOG1188	376	consensus WD40 repeat protein [General function pr	99.82
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.81
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
KOG1963	792	consensus WD40 repeat protein [General function pr	99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG2055	514	consensus WD40 repeat protein [General function pr	99.79
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.79
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.78
KOG1334	559	consensus WD40 repeat protein [General function pr	99.78
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.78
KOG4328	498	consensus WD40 protein [Function unknown]	99.78
COG2319	466	FOG: WD40 repeat [General function prediction only	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.77
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.76
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.75
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.75
KOG1188	376	consensus WD40 repeat protein [General function pr	99.74
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.73
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.73
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.72
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.72
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.7
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.68
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.68
KOG1310	758	consensus WD40 repeat protein [General function pr	99.66
KOG1963	792	consensus WD40 repeat protein [General function pr	99.65
KOG0649	325	consensus WD40 repeat protein [General function pr	99.61
PRK11028	330	6-phosphogluconolactonase; Provisional	99.61
PRK01742	429	tolB translocation protein TolB; Provisional	99.6
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.59
KOG0649	325	consensus WD40 repeat protein [General function pr	99.58
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.54
KOG2139	445	consensus WD40 repeat protein [General function pr	99.53
KOG4227	609	consensus WD40 repeat protein [General function pr	99.52
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.52
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.52
PRK01742	429	tolB translocation protein TolB; Provisional	99.51
KOG1334	559	consensus WD40 repeat protein [General function pr	99.5
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.5
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.48
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.48
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.45
KOG2139	445	consensus WD40 repeat protein [General function pr	99.45
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.45
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.44
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.42
PRK03629	429	tolB translocation protein TolB; Provisional	99.41
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.41
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.38
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.36
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.35
PRK03629	429	tolB translocation protein TolB; Provisional	99.33
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.33
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.33
PRK02889	427	tolB translocation protein TolB; Provisional	99.33
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.32
PRK05137	435	tolB translocation protein TolB; Provisional	99.31
PRK05137	435	tolB translocation protein TolB; Provisional	99.31
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.3
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.3
PRK04922	433	tolB translocation protein TolB; Provisional	99.29
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.27
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.27
PRK02889	427	tolB translocation protein TolB; Provisional	99.26
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.26
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.26
PRK04922	433	tolB translocation protein TolB; Provisional	99.26
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.25
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.22
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.2
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.2
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.19
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.14
KOG4547	541	consensus WD40 repeat-containing protein [General	99.14
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.14
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.11
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.1
KOG2321	703	consensus WD40 repeat protein [General function pr	99.07
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.07
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.07
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.05
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.03
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.01
PRK00178	430	tolB translocation protein TolB; Provisional	99.0
PRK04792	448	tolB translocation protein TolB; Provisional	98.98
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.97
KOG2321	703	consensus WD40 repeat protein [General function pr	98.97
PRK00178	430	tolB translocation protein TolB; Provisional	98.95
KOG4547	541	consensus WD40 repeat-containing protein [General	98.94
PRK01029	428	tolB translocation protein TolB; Provisional	98.92
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.91
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.9
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.9
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.88
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.88
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.87
PRK01029	428	tolB translocation protein TolB; Provisional	98.86
PRK04792	448	tolB translocation protein TolB; Provisional	98.83
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.81
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.79
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.79
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.78
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.78
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.77
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.73
KOG2315	566	consensus Predicted translation initiation factor	98.69
KOG2315	566	consensus Predicted translation initiation factor	98.67
KOG2695	425	consensus WD40 repeat protein [General function pr	98.63
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.63
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.59
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.53
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.53
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.52
KOG2314	698	consensus Translation initiation factor 3, subunit	98.48
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.45
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.43
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.41
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.38
COG4946	668	Uncharacterized protein related to the periplasmic	98.36
KOG2314	698	consensus Translation initiation factor 3, subunit	98.36
KOG2695	425	consensus WD40 repeat protein [General function pr	98.36
PRK04043	419	tolB translocation protein TolB; Provisional	98.31
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.26
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.24
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.21
PRK04043	419	tolB translocation protein TolB; Provisional	98.15
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.1
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.1
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.09
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.09
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.05
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.04
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.95
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.95
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.94
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.91
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.84
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.83
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.83
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.82
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.78
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.77
COG4946	668	Uncharacterized protein related to the periplasmic	97.74
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.71
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.68
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.66
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.62
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.62
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.6
KOG3621	726	consensus WD40 repeat-containing protein [General	97.52
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.35
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.3
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.29
KOG3621	726	consensus WD40 repeat-containing protein [General	97.28
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.27
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.15
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.14
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.14
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.12
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.98
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.88
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.87
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.8
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.76
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.75
PRK02888	635	nitrous-oxide reductase; Validated	96.49
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.48
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.41
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.4
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.34
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.31
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.27
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.25
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.24
PRK13616	591	lipoprotein LpqB; Provisional	96.22
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.18
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.18
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.17
PRK02888	635	nitrous-oxide reductase; Validated	96.15
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.14
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.95
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.93
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.87
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.69
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.62
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.61
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.44
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.4
KOG2444	238	consensus WD40 repeat protein [General function pr	95.28
PHA02713	557	hypothetical protein; Provisional	95.19
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.14
KOG2395	644	consensus Protein involved in vacuole import and d	95.12
KOG2395	644	consensus Protein involved in vacuole import and d	95.11
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.87
KOG2444	238	consensus WD40 repeat protein [General function pr	94.65
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.44
PRK13616	591	lipoprotein LpqB; Provisional	94.34
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.91
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.81
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.78
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.73
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.2
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.71
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.55
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	91.99
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	91.92
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	91.81
PRK13684	334	Ycf48-like protein; Provisional	91.41
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.3
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.85
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	90.76
PHA02713	557	hypothetical protein; Provisional	90.7
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.59
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.16
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.61
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	89.05
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	87.46
COG3391	381	Uncharacterized conserved protein [Function unknow	87.3
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	87.18
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	86.55
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.37
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	86.13
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	85.14
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	84.84
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	84.22
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	83.7
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	83.69
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	83.42
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	83.35
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	83.04
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	82.82
PRK13684	334	Ycf48-like protein; Provisional	82.69
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	81.89
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	81.34
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	80.78
KOG2377	657	consensus Uncharacterized conserved protein [Funct	80.43

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.2e-56  Score=352.05  Aligned_cols=308  Identities=58%  Similarity=1.082  Sum_probs=272.4

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      +..++.++||+++|+.++|+|..     +..|||||.|+.||+|+...+ .-+.++..+...|++.|++++|+|.|++|+
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~-----g~ilAscg~Dk~vriw~~~~~-~s~~ck~vld~~hkrsVRsvAwsp~g~~La   77 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGK-----GVILASCGTDKAVRIWSTSSG-DSWTCKTVLDDGHKRSVRSVAWSPHGRYLA   77 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCC-----ceEEEeecCCceEEEEecCCC-CcEEEEEeccccchheeeeeeecCCCcEEE
Confidence            56788999999999999999953     358999999999999998753 337788777788999999999999999999


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      +|++|.++.||....++++++.+++||..+|.|++|+++|++||+|++|++|.+|.+..+..+++...++.|.+.|..+.
T Consensus        78 ~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~  157 (312)
T KOG0645|consen   78 SASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI  157 (312)
T ss_pred             EeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEE
Confidence            99999999999988899999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          171 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      |||+..+|+++|.|++|++|+-.+  .+.|.+.+++.    +|...|++++|+|.|..|++++.|++++||...      
T Consensus       158 WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~----g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~------  225 (312)
T KOG0645|consen  158 WHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLD----GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY------  225 (312)
T ss_pred             EcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEec----CccceEEEEEecCCCceEEEecCCcceEeeeec------
Confidence            999999999999999999997653  45688888775    788899999999999999999999999999532      


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCC
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE  330 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~  330 (352)
                                +.+...|...++.++|. ++.+++++.|+.+++|....  -.+.+....+..+...|...|+++.|+|..
T Consensus       226 ----------~~~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~--~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~  292 (312)
T KOG0645|consen  226 ----------TDLSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESD--SPDEPSWNLLAKKEGAHEVDVNSVQWNPKV  292 (312)
T ss_pred             ----------cCcchhcccceEeeeec-ccceEeccCCCEEEEEEecC--CCCCchHHHHHhhhcccccccceEEEcCCC
Confidence                      22334567789999998 88999999999999997652  233455555556678899999999999965


Q ss_pred             cceEEEecCCCeEEEEeec
Q 018675          331 RRLLASASDDGMIKIWELA  349 (352)
Q Consensus       331 ~~~l~s~~~Dg~i~iw~~~  349 (352)
                      +..|++||.||.+++|++.
T Consensus       293 ~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  293 SNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCceeecCCCceEEEEEec
Confidence            6678999999999999985

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-48  Score=318.69  Aligned_cols=294  Identities=32%  Similarity=0.586  Sum_probs=240.6

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ++..++.||.+.|-|+.|+|+      +..|+|||.|.++|+||+.+.....++     +.|..-|.|++|+|||+.||+
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~------g~~l~tGsGD~TvR~WD~~TeTp~~t~-----KgH~~WVlcvawsPDgk~iAS  174 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPT------GSRLVTGSGDTTVRLWDLDTETPLFTC-----KGHKNWVLCVAWSPDGKKIAS  174 (480)
T ss_pred             eeccccCCCCCcEEEEEecCC------CceEEecCCCceEEeeccCCCCcceee-----cCCccEEEEEEECCCcchhhc
Confidence            344568899999999999996      579999999999999999987654444     458999999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC-----CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCe
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-----SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV  166 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v  166 (352)
                      |+.||+|++||..+++. ....+.+|...|++++|.|     .+.+|++++.||+++|||+..+   .++..+.+|+.+|
T Consensus       175 G~~dg~I~lwdpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~---~~~~~lsgHT~~V  250 (480)
T KOG0271|consen  175 GSKDGSIRLWDPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG---TCVRTLSGHTASV  250 (480)
T ss_pred             cccCCeEEEecCCCCCc-ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc---eEEEEeccCccce
Confidence            99999999999877653 3557899999999999965     5678999999999999998644   4678889999999


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc-----------CCCC--------
Q 018675          167 KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN-----------AKGD--------  227 (352)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~-----------~~~~--------  227 (352)
                      +|+.|--+ .+++++|.|++|++|+..+.     .+.    ....||...|+.|+++           |.++        
T Consensus       251 TCvrwGG~-gliySgS~DrtIkvw~a~dG-----~~~----r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~  320 (480)
T KOG0271|consen  251 TCVRWGGE-GLIYSGSQDRTIKVWRALDG-----KLC----RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE  320 (480)
T ss_pred             EEEEEcCC-ceEEecCCCceEEEEEccch-----hHH----HhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence            99999754 47899999999999975542     122    2345899999998866           3343        


Q ss_pred             -----------------EEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCC
Q 018675          228 -----------------KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADD  289 (352)
Q Consensus       228 -----------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~  289 (352)
                                       .|++|++|.++.+|+-...          -+++..+. .|.+-+..+.|+|++ ++|+++.|+
T Consensus       321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~----------kkpi~rmt-gHq~lVn~V~fSPd~r~IASaSFDk  389 (480)
T KOG0271|consen  321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS----------KKPITRMT-GHQALVNHVSFSPDGRYIASASFDK  389 (480)
T ss_pred             HHHHHHHHHHhhccCcceeEEecCCceEEEeccccc----------ccchhhhh-chhhheeeEEECCCccEEEEeeccc
Confidence                             4999999999999964211          11222222 377789999999987 899999999


Q ss_pred             eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       290 ~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      .|++|+...+         ..+..+.||-+.|+.++|+.|.+ +|+|||.|.++++|++.++
T Consensus       390 SVkLW~g~tG---------k~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  390 SVKLWDGRTG---------KFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTK  441 (480)
T ss_pred             ceeeeeCCCc---------chhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeee
Confidence            9999965443         23456789999999999999875 8999999999999999764

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-44  Score=298.16  Aligned_cols=290  Identities=28%  Similarity=0.540  Sum_probs=237.8

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC-----CC
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP-----SG   86 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-----~~   86 (352)
                      .+..+.+||...|.|++|+|+      ++.+|||+.||+|++||..+++....   .+ ..|.+.|++++|.|     ..
T Consensus       148 Tp~~t~KgH~~WVlcvawsPD------gk~iASG~~dg~I~lwdpktg~~~g~---~l-~gH~K~It~Lawep~hl~p~~  217 (480)
T KOG0271|consen  148 TPLFTCKGHKNWVLCVAWSPD------GKKIASGSKDGSIRLWDPKTGQQIGR---AL-RGHKKWITALAWEPLHLVPPC  217 (480)
T ss_pred             CcceeecCCccEEEEEEECCC------cchhhccccCCeEEEecCCCCCcccc---cc-cCcccceeEEeecccccCCCc
Confidence            445678999999999999998      68999999999999999988765332   12 45999999999976     56


Q ss_pred             CEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCe
Q 018675           87 KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV  166 (352)
Q Consensus        87 ~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v  166 (352)
                      ++||+++.||+++|||...+  .++..+.+|+.+|+|++|-.+ .+++++|.|++|++|+...+   .+++.+++|...|
T Consensus       218 r~las~skDg~vrIWd~~~~--~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG---~~~r~lkGHahwv  291 (480)
T KOG0271|consen  218 RRLASSSKDGSVRIWDTKLG--TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDG---KLCRELKGHAHWV  291 (480)
T ss_pred             cceecccCCCCEEEEEccCc--eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccch---hHHHhhcccchhe
Confidence            89999999999999997655  467788999999999999765 48999999999999998664   3567788999999


Q ss_pred             eEEEEc-----------CCCC-------------------------EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccC
Q 018675          167 KMVQWH-----------PTMD-------------------------VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN  210 (352)
Q Consensus       167 ~~~~~~-----------~~~~-------------------------~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  210 (352)
                      +.++.+           |.+.                         .|++|+.|.++.+|+.....    +++    ...
T Consensus       292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k----kpi----~rm  363 (480)
T KOG0271|consen  292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK----KPI----TRM  363 (480)
T ss_pred             eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc----cch----hhh
Confidence            888755           3333                         49999999999999643221    111    234


Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCC
Q 018675          211 NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADD  289 (352)
Q Consensus       211 ~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~  289 (352)
                      .+|+.-|+.+.|+||++++|+++-|..||+|+.+..++           +.++- .|...++.++|+.+. .+++|+.|.
T Consensus       364 tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~-----------lasfR-GHv~~VYqvawsaDsRLlVS~SkDs  431 (480)
T KOG0271|consen  364 TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF-----------LASFR-GHVAAVYQVAWSADSRLLVSGSKDS  431 (480)
T ss_pred             hchhhheeeEEECCCccEEEEeecccceeeeeCCCcch-----------hhhhh-hccceeEEEEeccCccEEEEcCCCc
Confidence            58999999999999999999999999999998765432           12222 367789999999875 788999999


Q ss_pred             eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEe
Q 018675          290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       290 ~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      ++++|+....         .+...+.||..+|.++.|+|||++ +++|+.|+.+++|.
T Consensus       432 TLKvw~V~tk---------Kl~~DLpGh~DEVf~vDwspDG~r-V~sggkdkv~~lw~  479 (480)
T KOG0271|consen  432 TLKVWDVRTK---------KLKQDLPGHADEVFAVDWSPDGQR-VASGGKDKVLRLWR  479 (480)
T ss_pred             eEEEEEeeee---------eecccCCCCCceEEEEEecCCCce-eecCCCceEEEeec
Confidence            9999976542         344567899999999999999975 78999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.1e-43  Score=278.49  Aligned_cols=294  Identities=24%  Similarity=0.435  Sum_probs=240.3

Q ss_pred             cceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCE
Q 018675            9 YELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKL   88 (352)
Q Consensus         9 ~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~   88 (352)
                      ++++...+|+||...|+++.|+++      ..+++|+|+||.+.|||.-+..+..-    + ..-..-|.+|+|+|+|++
T Consensus        43 i~~~~rr~LkGH~~Ki~~~~ws~D------sr~ivSaSqDGklIvWDs~TtnK~ha----i-pl~s~WVMtCA~sPSg~~  111 (343)
T KOG0286|consen   43 IQMRTRRTLKGHLNKIYAMDWSTD------SRRIVSASQDGKLIVWDSFTTNKVHA----I-PLPSSWVMTCAYSPSGNF  111 (343)
T ss_pred             eeeeeEEEecccccceeeeEecCC------cCeEEeeccCCeEEEEEcccccceeE----E-ecCceeEEEEEECCCCCe
Confidence            344556889999999999999998      47999999999999999876543211    1 223467999999999999


Q ss_pred             EEEEeCCCcEEEEEccCC----ceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCcc
Q 018675           89 LATASFDATTCIWEDVGG----DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ  164 (352)
Q Consensus        89 l~s~~~d~~i~i~~~~~~----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~  164 (352)
                      +|.|+.|+...||+..+.    .......+.+|.+-+.|+.|-+ ..+|+|+|.|.+..+||+..+.   .+..+.+|..
T Consensus       112 VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~---~~~~f~GH~g  187 (343)
T KOG0286|consen  112 VACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQ---QTQVFHGHTG  187 (343)
T ss_pred             EEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccce---EEEEecCCcc
Confidence            999999999999987633    2233456789999999999977 4678899999999999997664   4567889999


Q ss_pred             CeeEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          165 DVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       165 ~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      .|.+++++| +++.+++|+-|+..++||++..     .+.+++.    +|+..|++|+|+|+|.-+++|++|++.|+||+
T Consensus       188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-----~c~qtF~----ghesDINsv~ffP~G~afatGSDD~tcRlyDl  258 (343)
T KOG0286|consen  188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-----QCVQTFE----GHESDINSVRFFPSGDAFATGSDDATCRLYDL  258 (343)
T ss_pred             cEEEEecCCCCCCeEEecccccceeeeeccCc-----ceeEeec----ccccccceEEEccCCCeeeecCCCceeEEEee
Confidence            999999999 8999999999999999988764     4566554    89999999999999999999999999999998


Q ss_pred             CccccccCCCCccceeeEEeec-ccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcce
Q 018675          244 DITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDV  321 (352)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  321 (352)
                      +..+           ++..++. .....+.+++|+.+| ++.+|..|.++.+|+.-+.         +....+.+|..+|
T Consensus       259 RaD~-----------~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---------e~vg~L~GHeNRv  318 (343)
T KOG0286|consen  259 RADQ-----------ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---------ERVGVLAGHENRV  318 (343)
T ss_pred             cCCc-----------EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---------ceEEEeeccCCee
Confidence            7432           1222221 123468899999987 5677788999999975432         2344567999999


Q ss_pred             eEEEecCCCcceEEEecCCCeEEEEe
Q 018675          322 NSVQWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       322 ~~~~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      .++..+|||. .++|||.|.++|||.
T Consensus       319 Scl~~s~DG~-av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  319 SCLGVSPDGM-AVATGSWDSTLRIWA  343 (343)
T ss_pred             EEEEECCCCc-EEEecchhHheeecC
Confidence            9999999996 689999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-42  Score=275.57  Aligned_cols=305  Identities=24%  Similarity=0.375  Sum_probs=240.6

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceee-eeeeeeecceecceEEEEECCCCCEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFW-NCKAVLEEMHTRTVRSCAWSPSGKLL   89 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l   89 (352)
                      +....+|+||++.|+.++..+..     .+.+++++.|+++.+|++......+ .+...+ +.|...|..+..++||++.
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~-----~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~dg~~a   78 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKN-----SDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSDGNFA   78 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCC-----CceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccCCceE
Confidence            35567899999999999998863     5789999999999999987553222 222223 4599999999999999999


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec--CccCee
Q 018675           90 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG--HAQDVK  167 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--h~~~v~  167 (352)
                      ++++.|+++++||..++  +....+.+|...|.+++|+++..++++|+.|++|++|+.....    ..+...  +..-|.
T Consensus        79 lS~swD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c----k~t~~~~~~~~WVs  152 (315)
T KOG0279|consen   79 LSASWDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC----KYTIHEDSHREWVS  152 (315)
T ss_pred             EeccccceEEEEEecCC--cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE----EEEEecCCCcCcEE
Confidence            99999999999999887  4566778999999999999999999999999999999986432    223332  267799


Q ss_pred             EEEEcCC--CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          168 MVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       168 ~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      |+.|+|+  ..++++++.|+++++||+..-+         +.....||...++.++++|||.+.++|+.||.+.+||++.
T Consensus       153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~---------l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~  223 (315)
T KOG0279|consen  153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQ---------LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE  223 (315)
T ss_pred             EEEEcCCCCCcEEEEccCCceEEEEccCCcc---------hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC
Confidence            9999998  6789999999999999775421         2233458999999999999999999999999999999864


Q ss_pred             cccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEE
Q 018675          246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ  325 (352)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  325 (352)
                      .+           .+.  .-.+...|.+++|+|+.+.+++..+..|++|+...+...........-.....-.-....++
T Consensus       224 ~k-----------~ly--sl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsla  290 (315)
T KOG0279|consen  224 GK-----------NLY--SLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLA  290 (315)
T ss_pred             Cc-----------eeE--eccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEE
Confidence            32           112  22356789999999999999999999999998766544443332222111222344577889


Q ss_pred             ecCCCcceEEEecCCCeEEEEeecc
Q 018675          326 WSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       326 ~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      |++||..+ .+|-.|+.|++|++..
T Consensus       291 ws~dG~tL-f~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  291 WSADGQTL-FAGYTDNVIRVWQVAK  314 (315)
T ss_pred             EcCCCcEE-EeeecCCcEEEEEeec
Confidence            99999864 5799999999999874

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.7e-43  Score=293.56  Aligned_cols=284  Identities=25%  Similarity=0.394  Sum_probs=239.6

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC--CCEEEEEeC
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS--GKLLATASF   94 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~   94 (352)
                      -.|-+.+|..+.|+++      +++|+|||.+|.++||+......    ...+ ..|...|.++.|+|.  +.-+|||+.
T Consensus       171 Q~gd~rPis~~~fS~d------s~~laT~swsG~~kvW~~~~~~~----~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~  239 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSRD------SKHLATGSWSGLVKVWSVPQCNL----LQTL-RGHTSRVGAAVFHPVDSDLNLATASA  239 (459)
T ss_pred             hccCCCcceeeEeecC------CCeEEEeecCCceeEeecCCcce----eEEE-eccccceeeEEEccCCCccceeeecc
Confidence            3467889999999987      47999999999999999876532    2222 569999999999997  568999999


Q ss_pred             CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC
Q 018675           95 DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT  174 (352)
Q Consensus        95 d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (352)
                      ||++++|+..+.  .++..+.+|...|..++|+|+|++|+|++.|.+-++||+.....   +....||...|.+++|+|+
T Consensus       240 Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E---lL~QEGHs~~v~~iaf~~D  314 (459)
T KOG0272|consen  240 DGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE---LLLQEGHSKGVFSIAFQPD  314 (459)
T ss_pred             CCceeeeccCCC--cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh---hHhhcccccccceeEecCC
Confidence            999999987654  56788999999999999999999999999999999999976542   3446799999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCC
Q 018675          175 MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY  254 (352)
Q Consensus       175 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  254 (352)
                      |.++++|+.|..-+|||++..     .++..+    .+|..+|.+|+|+|+|..|||||.|+++||||++..+.      
T Consensus       315 GSL~~tGGlD~~~RvWDlRtg-----r~im~L----~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~------  379 (459)
T KOG0272|consen  315 GSLAATGGLDSLGRVWDLRTG-----RCIMFL----AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE------  379 (459)
T ss_pred             CceeeccCccchhheeecccC-----cEEEEe----cccccceeeEeECCCceEEeecCCCCcEEEeeeccccc------
Confidence            999999999999999987654     355544    37999999999999999999999999999999875432      


Q ss_pred             ccceeeEEeecccCcceEEEEecC--CceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcc
Q 018675          255 ASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR  332 (352)
Q Consensus       255 ~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~  332 (352)
                           ..+ .+.|.+-|..+.+.|  +.++++++.|+++++|.....         .+++.+.||.+.|.+++.+|++. 
T Consensus       380 -----ly~-ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---------~~~ksLaGHe~kV~s~Dis~d~~-  443 (459)
T KOG0272|consen  380 -----LYT-IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---------SPLKSLAGHEGKVISLDISPDSQ-  443 (459)
T ss_pred             -----cee-cccccchhhheEecccCCeEEEEcccCcceeeecCCCc---------ccchhhcCCccceEEEEeccCCc-
Confidence                 222 235778888899997  348999999999999965432         34567889999999999999986 


Q ss_pred             eEEEecCCCeEEEEe
Q 018675          333 LLASASDDGMIKIWE  347 (352)
Q Consensus       333 ~l~s~~~Dg~i~iw~  347 (352)
                      .++|+|.|.++|+|.
T Consensus       444 ~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  444 AIATSSFDRTIKLWR  458 (459)
T ss_pred             eEEEeccCceeeecc
Confidence            688999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.4e-40  Score=277.38  Aligned_cols=248  Identities=33%  Similarity=0.534  Sum_probs=212.6

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..+++|.||+..|.++.|+|.+.    ...+|||+.||++++|+.+....+    ..+ ..|...|..++|+|+|++|+|
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~----~~~lat~s~Dgtvklw~~~~e~~l----~~l-~gH~~RVs~VafHPsG~~L~T  278 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDS----DLNLATASADGTVKLWKLSQETPL----QDL-EGHLARVSRVAFHPSGKFLGT  278 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCC----ccceeeeccCCceeeeccCCCcch----hhh-hcchhhheeeeecCCCceeee
Confidence            56788999999999999999742    357999999999999998765322    222 458899999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      ++.|.+-++||..++.  .+....||...|.+++|.|+|.+++|||-|..-+|||++.++   ++..+.+|..+|..++|
T Consensus       279 asfD~tWRlWD~~tk~--ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr---~im~L~gH~k~I~~V~f  353 (459)
T KOG0272|consen  279 ASFDSTWRLWDLETKS--ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR---CIMFLAGHIKEILSVAF  353 (459)
T ss_pred             cccccchhhcccccch--hhHhhcccccccceeEecCCCceeeccCccchhheeecccCc---EEEEecccccceeeEeE
Confidence            9999999999998764  344568999999999999999999999999999999998775   57778999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      +|+|..+++||.|++++|||++....     +.++    .+|.+-|..|.|+| .|.+|+|++.|++++||..+      
T Consensus       354 sPNGy~lATgs~Dnt~kVWDLR~r~~-----ly~i----pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~------  418 (459)
T KOG0272|consen  354 SPNGYHLATGSSDNTCKVWDLRMRSE-----LYTI----PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR------  418 (459)
T ss_pred             CCCceEEeecCCCCcEEEeeeccccc-----ceec----ccccchhhheEecccCCeEEEEcccCcceeeecCC------
Confidence            99999999999999999999875432     2333    48999999999999 68999999999999999753      


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEE
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFF  294 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~  294 (352)
                           .|..+..+. .|+..|.+++.++++ .+++++.|.++++|
T Consensus       419 -----~~~~~ksLa-GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW  457 (459)
T KOG0272|consen  419 -----TWSPLKSLA-GHEGKVISLDISPDSQAIATSSFDRTIKLW  457 (459)
T ss_pred             -----Ccccchhhc-CCccceEEEEeccCCceEEEeccCceeeec
Confidence                 444444444 488899999999987 78999999999999

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2e-37  Score=265.03  Aligned_cols=307  Identities=24%  Similarity=0.416  Sum_probs=234.5

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      +.++.||+..|++++|.|.+     +-+++|||.|++|.+|+-.. .   +++... ..|.+.|+|+.|+|||.++|+++
T Consensus       140 vGei~GhSr~ins~~~KpsR-----PfRi~T~sdDn~v~ffeGPP-F---KFk~s~-r~HskFV~~VRysPDG~~Fat~g  209 (603)
T KOG0318|consen  140 VGEITGHSRRINSVDFKPSR-----PFRIATGSDDNTVAFFEGPP-F---KFKSSF-REHSKFVNCVRYSPDGSRFATAG  209 (603)
T ss_pred             cceeeccceeEeeeeccCCC-----ceEEEeccCCCeEEEeeCCC-e---eeeecc-cccccceeeEEECCCCCeEEEec
Confidence            45678999999999999986     35799999999999997432 2   333333 45889999999999999999999


Q ss_pred             CCCcEEEEEccCCceeeeEeec---cccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe--------------eE--
Q 018675           94 FDATTCIWEDVGGDYECVATLE---GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE--------------FE--  154 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~--------------~~--  154 (352)
                      .||++.+||-.+++.  +..+.   +|.+.|.+++|+||+.+|+|+|.|.++++||+.....              ..  
T Consensus       210 sDgki~iyDGktge~--vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l  287 (603)
T KOG0318|consen  210 SDGKIYIYDGKTGEK--VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL  287 (603)
T ss_pred             CCccEEEEcCCCccE--EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence            999999999887754  45554   8999999999999999999999999999999753210              00  


Q ss_pred             ------------------------EEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCce------eE-
Q 018675          155 ------------------------CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWH------CV-  203 (352)
Q Consensus       155 ------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~------~~-  203 (352)
                                              +...+.+|...|+++..+|++.++++|+.||.|.-|+..........      .+ 
T Consensus       288 Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~  367 (603)
T KOG0318|consen  288 WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK  367 (603)
T ss_pred             EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE
Confidence                                    23346789999999999999999999999999999987543222110      00 


Q ss_pred             -------------------eeeec---------------c-------CC------------------------CCcccEE
Q 018675          204 -------------------QTISE---------------S-------NN------------------------GHSSTIW  218 (352)
Q Consensus       204 -------------------~~~~~---------------~-------~~------------------------~h~~~i~  218 (352)
                                         ..+..               +       .+                        .-.....
T Consensus       368 ~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s  447 (603)
T KOG0318|consen  368 GMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESS  447 (603)
T ss_pred             EEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccc
Confidence                               00000               0       00                        0122344


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEcc
Q 018675          219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES  297 (352)
Q Consensus       219 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~  297 (352)
                      +++++|++.+++.|+.||.|++|.+....+..         .. ....|...+..++++|++ +++++...+.+.+|+..
T Consensus       448 ~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e---------e~-~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~  517 (603)
T KOG0318|consen  448 AVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE---------EA-KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVA  517 (603)
T ss_pred             eEEEcCCCCEEEEecccceEEEEEecCCcccc---------ee-eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcc
Confidence            67899999999999999999999875322211         11 112367889999999987 89999999999999765


Q ss_pred             CCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          298 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      ....        ......-|...|++++|+|++. ++||||.|-.|.||++.++
T Consensus       518 s~~~--------~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP  562 (603)
T KOG0318|consen  518 SREV--------KTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKP  562 (603)
T ss_pred             cCce--------ecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccCh
Confidence            4322        1223345999999999999985 8999999999999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.8e-38  Score=262.62  Aligned_cols=282  Identities=26%  Similarity=0.489  Sum_probs=228.9

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEE
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCI  100 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i  100 (352)
                      +-.|+.+.|.|+      +..|+||++.|.+.||+....    .. ..+...|..+|+++.|+++|..+++|..+|.|++
T Consensus        96 kc~V~~v~WtPe------GRRLltgs~SGEFtLWNg~~f----nF-EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKy  164 (464)
T KOG0284|consen   96 KCPVNVVRWTPE------GRRLLTGSQSGEFTLWNGTSF----NF-ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKY  164 (464)
T ss_pred             ccceeeEEEcCC------CceeEeecccccEEEecCcee----eH-HHHhhhhcccceeEEEccCCCEEEEcCCCceEEe
Confidence            347899999997      578999999999999987431    11 2334679999999999999999999999999999


Q ss_pred             EEccCCceeeeEeecccc-CCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE
Q 018675          101 WEDVGGDYECVATLEGHE-NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF  179 (352)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  179 (352)
                      |+..-.   -+..+++|. ..|++++|+|+...|++||+|++|+|||.....   ....+.+|.-.|++++|||+...++
T Consensus       165 Wqpnmn---nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k---ee~vL~GHgwdVksvdWHP~kgLia  238 (464)
T KOG0284|consen  165 WQPNMN---NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK---EERVLRGHGWDVKSVDWHPTKGLIA  238 (464)
T ss_pred             cccchh---hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc---hhheeccCCCCcceeccCCccceeE
Confidence            975432   233445555 899999999999999999999999999986543   2345689999999999999999999


Q ss_pred             EEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc-cccccCCCCccce
Q 018675          180 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI-TRMQSGDGYASWR  258 (352)
Q Consensus       180 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~  258 (352)
                      +||.|+.|++||...     ..|+.++.    +|.+.|.++.|+|++++|+++|.|..++++|++. .++...       
T Consensus       239 sgskDnlVKlWDprS-----g~cl~tlh----~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~-------  302 (464)
T KOG0284|consen  239 SGSKDNLVKLWDPRS-----GSCLATLH----GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY-------  302 (464)
T ss_pred             EccCCceeEeecCCC-----cchhhhhh----hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh-------
Confidence            999999999996544     34555553    7999999999999999999999999999999873 222211       


Q ss_pred             eeEEeecccCcceEEEEecC--CceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEE
Q 018675          259 HLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLAS  336 (352)
Q Consensus       259 ~~~~~~~~~~~~i~~~~~~~--~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s  336 (352)
                            -.|...+.++.|.|  .+++.+|+.||.+..|.....        ..+.....+|...|.+++|+|-|. +|+|
T Consensus       303 ------r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~--------~p~~~i~~AHd~~iwsl~~hPlGh-il~t  367 (464)
T KOG0284|consen  303 ------RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE--------EPLGEIPPAHDGEIWSLAYHPLGH-ILAT  367 (464)
T ss_pred             ------hcchhhheeeccccccccceeeccCCCceEEEecccc--------ccccCCCcccccceeeeeccccce-eEee
Confidence                  12566788888888  468999999999999976411        122234578999999999999985 8999


Q ss_pred             ecCCCeEEEEeecc
Q 018675          337 ASDDGMIKIWELAN  350 (352)
Q Consensus       337 ~~~Dg~i~iw~~~~  350 (352)
                      |+.|.++|.|.-.+
T Consensus       368 gsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  368 GSNDRTVRFWTRNR  381 (464)
T ss_pred             cCCCcceeeeccCC
Confidence            99999999997544

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.5e-36  Score=236.05  Aligned_cols=278  Identities=21%  Similarity=0.344  Sum_probs=219.5

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccC
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHEN  119 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~  119 (352)
                      -+|+|+|.|.+||+|...++.    |...+. .....|+.+.++|+++.||+++. ..|++||..++...++.++.+|+.
T Consensus        11 viLvsA~YDhTIRfWqa~tG~----C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~k   84 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGI----CSRTIQ-HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTK   84 (311)
T ss_pred             eEEEeccCcceeeeeehhcCe----EEEEEe-cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCC
Confidence            479999999999999998874    333332 13478999999999999998764 679999998887778999999999


Q ss_pred             CeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 018675          120 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN  199 (352)
Q Consensus       120 ~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~  199 (352)
                      .|+++.|..+|..++|||+||+++|||++.-   .+ .....|..+|+++..+|+...|+++..+|.|++||+....   
T Consensus        85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~---~~-qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~---  157 (311)
T KOG0315|consen   85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL---SC-QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS---  157 (311)
T ss_pred             ceEEEEEeecCeEEEecCCCceEEEEeccCc---cc-chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc---
Confidence            9999999999999999999999999999752   22 2334577899999999999999999999999999986531   


Q ss_pred             ceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCC
Q 018675          200 WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE  279 (352)
Q Consensus       200 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  279 (352)
                        +...+..   .-...|.++...|+|.+|+.+..-|+..+|++-....     .....+..++. .|..-+....++|+
T Consensus       158 --c~~~liP---e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----~s~l~P~~k~~-ah~~~il~C~lSPd  226 (311)
T KOG0315|consen  158 --CTHELIP---EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----ASELEPVHKFQ-AHNGHILRCLLSPD  226 (311)
T ss_pred             --cccccCC---CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----cccceEhhhee-cccceEEEEEECCC
Confidence              2222211   1236899999999999999999999999998643111     11222333343 35666777788887


Q ss_pred             c-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          280 G-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       280 ~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      + +|+++++|.++++|....-  +      +.-....+|+..+.+++||.|++ +|+||+.|+++|+|+++.
T Consensus       227 ~k~lat~ssdktv~iwn~~~~--~------kle~~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~  289 (311)
T KOG0315|consen  227 VKYLATCSSDKTVKIWNTDDF--F------KLELVLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDLSA  289 (311)
T ss_pred             CcEEEeecCCceEEEEecCCc--e------eeEEEeecCCceEEeeeeccCcc-EEEecCCCCceeeccccc
Confidence            5 8999999999999965431  1      12234579999999999999987 688999999999999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.6e-36  Score=256.38  Aligned_cols=292  Identities=31%  Similarity=0.546  Sum_probs=225.1

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeee----eeee-----ecceecceEEEEECCC
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNC----KAVL-----EEMHTRTVRSCAWSPS   85 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~----~~~~-----~~~h~~~v~~~~~s~~   85 (352)
                      ..+. |+.+|.+.+|+|.+     ...+++++.|-+.|+|++.........    +..+     ...-+..|++++|+.+
T Consensus       173 kvl~-~~~~V~~~~WnP~~-----~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~  246 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLR-----DGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND  246 (524)
T ss_pred             eecc-CCCceEEEecCchh-----hhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC
Confidence            3444 99999999999975     237999999999999998641100000    0000     0112467999999999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccC
Q 018675           86 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD  165 (352)
Q Consensus        86 ~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~  165 (352)
                      |..||+|+.||.+++|+..+.   .+.++..|.++|.++.|+..|++|++++-|+++.+||...+...   ..+.-|..+
T Consensus       247 G~~LatG~~~G~~riw~~~G~---l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~---q~f~~~s~~  320 (524)
T KOG0273|consen  247 GTLLATGSEDGEARIWNKDGN---LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK---QQFEFHSAP  320 (524)
T ss_pred             CCeEEEeecCcEEEEEecCch---hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE---EeeeeccCC
Confidence            999999999999999986543   46678899999999999999999999999999999998665432   223345655


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          166 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       166 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      ...+.|-.+ .-+++.+.|+.|+++.+....+     ..++    .+|.++|.+|.|+|.+.+|+|++.|+++|||....
T Consensus       321 ~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P-----~~t~----~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  321 ALDVDWQSN-DEFATSSTDGCIHVCKVGEDRP-----VKTF----IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             ccceEEecC-ceEeecCCCceEEEEEecCCCc-----ceee----ecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence            567888654 4578999999999998765432     2222    37999999999999999999999999999997532


Q ss_pred             cccccCCCCccceeeEEeecccCcceEEEEecCCc----------eEEecCCCCeEEEEEccCCccccCcccceeeeccc
Q 018675          246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG----------IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEK  315 (352)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~  315 (352)
                      ...           ...+ ..|...|+.+.|+|.+          ++++++.|+++++|+....         ..+..+.
T Consensus       391 ~~~-----------~~~l-~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---------v~i~~f~  449 (524)
T KOG0273|consen  391 SNS-----------VHDL-QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---------VPIHTLM  449 (524)
T ss_pred             Ccc-----------hhhh-hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---------ceeEeec
Confidence            110           0111 1367788888888732          6999999999999976432         3455678


Q ss_pred             ccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          316 AHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       316 ~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .|+.+|++++|||+++ ++|+|+.||.|.||++..
T Consensus       450 kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  450 KHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             cCCCceEEEEecCCCc-EEEecCCCCeeEeccccc
Confidence            8999999999999987 689999999999999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-36  Score=252.59  Aligned_cols=301  Identities=25%  Similarity=0.411  Sum_probs=228.9

Q ss_pred             CCccceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC
Q 018675            6 DGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS   85 (352)
Q Consensus         6 ~~~~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~   85 (352)
                      +-.++....+.|..|+++|+.+.|+++      |++|||+|.|.+..+|....... .+..... ..|..+|..+.||||
T Consensus       209 ~~qip~qt~qil~~htdEVWfl~FS~n------GkyLAsaSkD~Taiiw~v~~d~~-~kl~~tl-vgh~~~V~yi~wSPD  280 (519)
T KOG0293|consen  209 RLQIPSQTWQILQDHTDEVWFLQFSHN------GKYLASASKDSTAIIWIVVYDVH-FKLKKTL-VGHSQPVSYIMWSPD  280 (519)
T ss_pred             cccCCchhhhhHhhCCCcEEEEEEcCC------CeeEeeccCCceEEEEEEecCcc-eeeeeee-ecccCceEEEEECCC
Confidence            344555667788999999999999997      78999999999999998765443 2333333 358899999999999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec-Ccc
Q 018675           86 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG-HAQ  164 (352)
Q Consensus        86 ~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-h~~  164 (352)
                      .++|++++.|..+.+||..+++...... .++...+.+++|.|||..+++|+.|+++..||+.. +....   ..+ ...
T Consensus       281 dryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~---W~gvr~~  355 (519)
T KOG0293|consen  281 DRYLLACGFDEVLSLWDVDTGDLRHLYP-SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGN---WEGVRDP  355 (519)
T ss_pred             CCeEEecCchHheeeccCCcchhhhhcc-cCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhc---ccccccc
Confidence            9999999999999999998886432211 23457899999999999999999999999999853 22221   222 124


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          165 DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       165 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      .|.+++..+||+.+++...|..|++|+.+.....     ..+     ....+|.+++.+.+++++++.-.+..+.+||++
T Consensus       356 ~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr-----~li-----se~~~its~~iS~d~k~~LvnL~~qei~LWDl~  425 (519)
T KOG0293|consen  356 KVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR-----GLI-----SEEQPITSFSISKDGKLALVNLQDQEIHLWDLE  425 (519)
T ss_pred             eeEEEEEcCCCcEEEEEecccceeeechhhhhhh-----ccc-----cccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence            6889999999999999999999999976543211     111     234689999999999999999999999999986


Q ss_pred             cccccc-CCCCccceeeEEeecccCcceEEEEecC--CceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcce
Q 018675          245 ITRMQS-GDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDV  321 (352)
Q Consensus       245 ~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  321 (352)
                      ..+... ..|++.           ..-+..-+|..  +.++++|+.|+.|++|....+         .++..+.||...|
T Consensus       426 e~~lv~kY~Ghkq-----------~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---------kll~~LsGHs~~v  485 (519)
T KOG0293|consen  426 ENKLVRKYFGHKQ-----------GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---------KLLAVLSGHSKTV  485 (519)
T ss_pred             hhhHHHHhhcccc-----------cceEEEeccCCCCcceEEecCCCceEEEEEccCC---------ceeEeecCCccee
Confidence            332211 111110           01122223332  358999999999999966442         3456778999999


Q ss_pred             eEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          322 NSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       322 ~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ++++|+|..+.++||+|+||+||||...
T Consensus       486 NcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  486 NCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             eEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            9999999999999999999999999876

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.1e-35  Score=242.32  Aligned_cols=300  Identities=21%  Similarity=0.362  Sum_probs=231.0

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..+.+|.+|++.|++++.+|+      .++++|||.|....||++.++.....+     ..|+.+|+++.|+.+|.+|||
T Consensus        55 dS~~tF~~H~~svFavsl~P~------~~l~aTGGgDD~AflW~~~~ge~~~el-----tgHKDSVt~~~FshdgtlLAT  123 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPN------NNLVATGGGDDLAFLWDISTGEFAGEL-----TGHKDSVTCCSFSHDGTLLAT  123 (399)
T ss_pred             cceeehhhcCCceEEEEeCCC------CceEEecCCCceEEEEEccCCcceeEe-----cCCCCceEEEEEccCceEEEe
Confidence            345789999999999999995      479999999999999999887633222     459999999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      |..+|.+.||...++..+  ..+.+.-+.+.-+.|+|.+..|++|+.||.+++|.+...   .....+.+|+.++++-.|
T Consensus       124 GdmsG~v~v~~~stg~~~--~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~---~~~kv~~Gh~~~ct~G~f  198 (399)
T KOG0296|consen  124 GDMSGKVLVFKVSTGGEQ--WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ---ALCKVMSGHNSPCTCGEF  198 (399)
T ss_pred             cCCCccEEEEEcccCceE--EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc---ceeeEecCCCCCcccccc
Confidence            999999999998776432  333334566777899999999999999999999999754   345678899999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCC---------CceeEe------ee---------------------------ecc
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSD---------NWHCVQ------TI---------------------------SES  209 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~---------~~~~~~------~~---------------------------~~~  209 (352)
                      .|+|+.++++..|++|++|+.......         ...++.      ++                           ...
T Consensus       199 ~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l  278 (399)
T KOG0296|consen  199 IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL  278 (399)
T ss_pred             cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence            999999999999999999987543110         000000      00                           000


Q ss_pred             CCCCcccEEEEEE---cCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecC
Q 018675          210 NNGHSSTIWALSF---NAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGA  286 (352)
Q Consensus       210 ~~~h~~~i~~l~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~  286 (352)
                      ...++..+.+|.+   +..-.+.|+|+-||+|.|||+....           .+...  .|...|..+.|-+..++++++
T Consensus       279 ~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-----------~R~~c--~he~~V~~l~w~~t~~l~t~c  345 (399)
T KOG0296|consen  279 KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-----------LRHIC--EHEDGVTKLKWLNTDYLLTAC  345 (399)
T ss_pred             cccchhhhhhhhhcccccccchhhcccccceEEEEecccch-----------hheec--cCCCceEEEEEcCcchheeec
Confidence            0123333334443   4455678889999999999975321           12211  367779999999988999999


Q ss_pred             CCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          287 ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       287 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .||.++.|+...+         .++..+.||+..|.+++++|+.+ +++|+|.|++.+||++.+
T Consensus       346 ~~g~v~~wDaRtG---------~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~~  399 (399)
T KOG0296|consen  346 ANGKVRQWDARTG---------QLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVPN  399 (399)
T ss_pred             cCceEEeeecccc---------ceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecCC
Confidence            9999999976543         34556789999999999999876 688999999999999863

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.7e-36  Score=268.96  Aligned_cols=261  Identities=25%  Similarity=0.424  Sum_probs=209.5

Q ss_pred             CccceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCc--------eeeee-------------
Q 018675            7 GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS--------RFWNC-------------   65 (352)
Q Consensus         7 ~~~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~--------~~~~~-------------   65 (352)
                      .+.+-.+..++..-...|+|..|+++      ..++|.|-.|-.|++|.+...+        .+...             
T Consensus       364 ~~lpSic~YT~~nt~~~v~ca~fSdd------ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D  437 (707)
T KOG0263|consen  364 NSLPSICMYTFHNTYQGVTCAEFSDD------SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLD  437 (707)
T ss_pred             CCCCcEEEEEEEEcCCcceeEeecCC------cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhcc
Confidence            34444566666555568899999987      4689999999999999876421        00000             


Q ss_pred             -----eeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCC
Q 018675           66 -----KAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK  140 (352)
Q Consensus        66 -----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~  140 (352)
                           ....-..|.++|+.+.|+|+.++|++++.|+++++|...+.  .++...+||..+|+.+.|+|-|-+|||+|.|+
T Consensus       438 ~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~  515 (707)
T KOG0263|consen  438 DDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQ  515 (707)
T ss_pred             ccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccc--eeEEEecCCCcceeeEEecCCceEEEecCCCc
Confidence                 00001359999999999999999999999999999998765  45666789999999999999999999999999


Q ss_pred             cEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEE
Q 018675          141 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWAL  220 (352)
Q Consensus       141 ~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l  220 (352)
                      +.++|....   ..+.+.+.+|...+.|+.|||+..++++||.|.++++||+.....     ...    ..||..+|.+|
T Consensus       516 tArLWs~d~---~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-----VRi----F~GH~~~V~al  583 (707)
T KOG0263|consen  516 TARLWSTDH---NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-----VRI----FTGHKGPVTAL  583 (707)
T ss_pred             eeeeeeccc---CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-----EEE----ecCCCCceEEE
Confidence            999999754   345778899999999999999999999999999999998766532     222    24899999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCc
Q 018675          221 SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDD  300 (352)
Q Consensus       221 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~  300 (352)
                      +|+|.|++|++|+.||.|++||+...                                                      
T Consensus       584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~~------------------------------------------------------  609 (707)
T KOG0263|consen  584 AFSPCGRYLASGDEDGLIKIWDLANG------------------------------------------------------  609 (707)
T ss_pred             EEcCCCceEeecccCCcEEEEEcCCC------------------------------------------------------
Confidence            99999999999999999999987411                                                      


Q ss_pred             cccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          301 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       301 ~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                              .++.+..+|.+.|++++||.+|. +||+||.|.+|++||+.+
T Consensus       610 --------~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  610 --------SLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTK  650 (707)
T ss_pred             --------cchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchh
Confidence                    11223457888888888888875 788888888888888764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-35  Score=231.90  Aligned_cols=254  Identities=21%  Similarity=0.343  Sum_probs=198.0

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..+..|.||+..|..+..+|+      +++++|+|.|+++|+||+.+++.    ...+ ..|..-|.+++|+||.+.+++
T Consensus        54 ~~~r~~~GHsH~v~dv~~s~d------g~~alS~swD~~lrlWDl~~g~~----t~~f-~GH~~dVlsva~s~dn~qivS  122 (315)
T KOG0279|consen   54 VPVRRLTGHSHFVSDVVLSSD------GNFALSASWDGTLRLWDLATGES----TRRF-VGHTKDVLSVAFSTDNRQIVS  122 (315)
T ss_pred             ceeeeeeccceEecceEEccC------CceEEeccccceEEEEEecCCcE----EEEE-EecCCceEEEEecCCCceeec
Confidence            567789999999999999997      58999999999999999988742    2222 459999999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeecc--ccCCeeEEEECCC--CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCee
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEG--HENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK  167 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~  167 (352)
                      |+-|++|++|+..+.   +..++..  +.+-|.|++|+|+  ...|+++|+|++|++||+...   +....+.+|+..++
T Consensus       123 GSrDkTiklwnt~g~---ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~---~l~~~~~gh~~~v~  196 (315)
T KOG0279|consen  123 GSRDKTIKLWNTLGV---CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC---QLRTTFIGHSGYVN  196 (315)
T ss_pred             CCCcceeeeeeeccc---EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc---chhhccccccccEE
Confidence            999999999997653   3444433  3778999999997  678999999999999998644   34567789999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccc
Q 018675          168 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR  247 (352)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  247 (352)
                      .++++|||..+++|+.||.+-+||+.+..     +++.+     .|...|++++|+|+..-|+.+. +..|+|||++...
T Consensus       197 t~~vSpDGslcasGgkdg~~~LwdL~~~k-----~lysl-----~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~  265 (315)
T KOG0279|consen  197 TVTVSPDGSLCASGGKDGEAMLWDLNEGK-----NLYSL-----EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKA  265 (315)
T ss_pred             EEEECCCCCEEecCCCCceEEEEEccCCc-----eeEec-----cCCCeEeeEEecCCceeEeecc-CCceEEEeccchh
Confidence            99999999999999999999999987653     34444     4778999999999976555544 4569999987543


Q ss_pred             cccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEc
Q 018675          248 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE  296 (352)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~  296 (352)
                      .........-.+   ..........+++|+++| .+.+|-.|+.|++|..
T Consensus       266 ~v~~l~~d~~g~---s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  266 VVEELKLDGIGP---SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             hhhhcccccccc---ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence            322111110000   001122335578888877 7999999999999954

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.4e-34  Score=246.27  Aligned_cols=299  Identities=19%  Similarity=0.364  Sum_probs=230.0

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF   94 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   94 (352)
                      .+++.|+.-|+|+.|+|+      +.+|||+|.||++.+||-.++++...+..  ...|++.|++++|+||++.++|++.
T Consensus       184 ~s~r~HskFV~~VRysPD------G~~Fat~gsDgki~iyDGktge~vg~l~~--~~aHkGsIfalsWsPDs~~~~T~Sa  255 (603)
T KOG0318|consen  184 SSFREHSKFVNCVRYSPD------GSRFATAGSDGKIYIYDGKTGEKVGELED--SDAHKGSIFALSWSPDSTQFLTVSA  255 (603)
T ss_pred             ecccccccceeeEEECCC------CCeEEEecCCccEEEEcCCCccEEEEecC--CCCccccEEEEEECCCCceEEEecC
Confidence            456789999999999998      57999999999999999888765443322  3579999999999999999999999


Q ss_pred             CCcEEEEEccCCce-----------------------------------------eeeEeeccccCCeeEEEECCCCcEE
Q 018675           95 DATTCIWEDVGGDY-----------------------------------------ECVATLEGHENEVKSVSWNASGTLL  133 (352)
Q Consensus        95 d~~i~i~~~~~~~~-----------------------------------------~~~~~~~~h~~~v~~v~~~~~~~~l  133 (352)
                      |.+++|||..+...                                         .+..++.+|+..|+++..+|++.+|
T Consensus       256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i  335 (603)
T KOG0318|consen  256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI  335 (603)
T ss_pred             CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence            99999999643321                                         0234567899999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCCeeE-------------------------------E---------------------------
Q 018675          134 ATCGRDKSVWIWEVMPGNEFE-------------------------------C---------------------------  155 (352)
Q Consensus       134 ~s~~~d~~v~vwd~~~~~~~~-------------------------------~---------------------------  155 (352)
                      ++|+.||.|.-|+...+....                               .                           
T Consensus       336 ~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~  415 (603)
T KOG0318|consen  336 YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS  415 (603)
T ss_pred             EeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence            999999999999874221100                               0                           


Q ss_pred             ------------EEEeecCc--------cCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcc
Q 018675          156 ------------VSVLQGHA--------QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS  215 (352)
Q Consensus       156 ------------~~~~~~h~--------~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~  215 (352)
                                  +..++.+.        ....+++.+|++..++.|++|+.+++|.+.......       +.....|..
T Consensus       416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e-------e~~~~~h~a  488 (603)
T KOG0318|consen  416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE-------EAKLLEHRA  488 (603)
T ss_pred             CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc-------eeeeecccC
Confidence                        00011000        123467789999999999999999999876532111       112235889


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEE
Q 018675          216 TIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFF  294 (352)
Q Consensus       216 ~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~  294 (352)
                      +|++++|+||+.|||+|...+.+.+||.......           .....+|...|.+++|+|+. ++|+|+-|-.|.+|
T Consensus       489 ~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~-----------~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy  557 (603)
T KOG0318|consen  489 AITDVAYSPDGAYLAAGDASRKVVLYDVASREVK-----------TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY  557 (603)
T ss_pred             CceEEEECCCCcEEEEeccCCcEEEEEcccCcee-----------cceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence            9999999999999999999999999997643321           12234688899999999976 89999999999999


Q ss_pred             EccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          295 VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ...+      +...  +.-..+|.+.|+.++|..+.  .++|.|.|-.||+|.+.
T Consensus       558 sv~k------P~~~--i~iknAH~~gVn~v~wlde~--tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  558 SVKK------PAKH--IIIKNAHLGGVNSVAWLDES--TVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EccC------hhhh--eEeccccccCceeEEEecCc--eEEeccCcceeEEeccc
Confidence            7643      2222  23345798889999998643  47899999999999985

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5e-35  Score=239.67  Aligned_cols=296  Identities=23%  Similarity=0.372  Sum_probs=234.7

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      +....++||.+.|.|+++-|.      .+.|+|||.|++++|||+.++.-..+    + ..|...|..+++|+-..++.+
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~------n~wf~tgs~DrtikIwDlatg~Lklt----l-tGhi~~vr~vavS~rHpYlFs  210 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPG------NEWFATGSADRTIKIWDLATGQLKLT----L-TGHIETVRGVAVSKRHPYLFS  210 (460)
T ss_pred             eehhhhhhccceEEEEeeCCC------ceeEEecCCCceeEEEEcccCeEEEe----e-cchhheeeeeeecccCceEEE
Confidence            445568899999999999996      47999999999999999998753222    2 347788999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      ++.|+.|+.||.+..+  .+....||-+.|.|++.+|.-..|++|+.|.+++|||++.-   ..+..+.+|...|..+.+
T Consensus       211 ~gedk~VKCwDLe~nk--vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr---~~V~~l~GH~~~V~~V~~  285 (460)
T KOG0285|consen  211 AGEDKQVKCWDLEYNK--VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR---ASVHVLSGHTNPVASVMC  285 (460)
T ss_pred             ecCCCeeEEEechhhh--hHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc---ceEEEecCCCCcceeEEe
Confidence            9999999999987653  45667899999999999999999999999999999999754   357889999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG  251 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (352)
                      .|.+..+++||.|++|++||+....     ...++.    .|...|.+++.+|....+|+++.| .|+-|++....+.  
T Consensus       286 ~~~dpqvit~S~D~tvrlWDl~agk-----t~~tlt----~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~--  353 (460)
T KOG0285|consen  286 QPTDPQVITGSHDSTVRLWDLRAGK-----TMITLT----HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFL--  353 (460)
T ss_pred             ecCCCceEEecCCceEEEeeeccCc-----eeEeee----cccceeeEEecCCchhhhhccCCc-cceeccCCccchh--
Confidence            9999999999999999999876542     122332    578899999999999999999887 5899987533221  


Q ss_pred             CCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeec-ccccCcceeEEEecCCC
Q 018675          252 DGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK-EKAHDMDVNSVQWSPGE  330 (352)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~sp~~  330 (352)
                               ..+ ..|...+.+++...++++++|+.+|.+.+|+....--++..  ..+++. ...-+..|++.+|...+
T Consensus       354 ---------~nl-sgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~--~t~vqpGSl~sEagI~as~fDktg  421 (460)
T KOG0285|consen  354 ---------QNL-SGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRG--QTIVQPGSLESEAGIFASCFDKTG  421 (460)
T ss_pred             ---------hcc-ccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccc--cccccCCccccccceeEEeecccC
Confidence                     111 23555678888888999999999999999987643222110  011110 11234679999998888


Q ss_pred             cceEEEecCCCeEEEEee
Q 018675          331 RRLLASASDDGMIKIWEL  348 (352)
Q Consensus       331 ~~~l~s~~~Dg~i~iw~~  348 (352)
                      .+ |+||..|++|++|+=
T Consensus       422 ~r-lit~eadKtIk~~ke  438 (460)
T KOG0285|consen  422 SR-LITGEADKTIKMYKE  438 (460)
T ss_pred             ce-EEeccCCcceEEEec
Confidence            76 569999999999974

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=9.1e-35  Score=232.99  Aligned_cols=292  Identities=26%  Similarity=0.447  Sum_probs=229.4

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCC-ceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSAS-SRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      +-.+.||++.|+.+.|+|+      +++|||||.|..|-+|+.... +.+++.     +.|.++|..+.|.+|+..|+++
T Consensus        40 ~m~l~gh~geI~~~~F~P~------gs~~aSgG~Dr~I~LWnv~gdceN~~~l-----kgHsgAVM~l~~~~d~s~i~S~  108 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPD------GSCFASGGSDRAIVLWNVYGDCENFWVL-----KGHSGAVMELHGMRDGSHILSC  108 (338)
T ss_pred             hhhcCCCcceEEEEEECCC------CCeEeecCCcceEEEEeccccccceeee-----ccccceeEeeeeccCCCEEEEe
Confidence            3456799999999999996      579999999999999996543 222332     4699999999999999999999


Q ss_pred             eCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      +.|.+++.||.+++  +++...++|..-|+++.-+.-| .++.+++.|+++++||++...   .+.++ ....+++++.|
T Consensus       109 gtDk~v~~wD~~tG--~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~---~~~t~-~~kyqltAv~f  182 (338)
T KOG0265|consen  109 GTDKTVRGWDAETG--KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE---AIKTF-ENKYQLTAVGF  182 (338)
T ss_pred             cCCceEEEEecccc--eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc---hhhcc-ccceeEEEEEe
Confidence            99999999999887  4566778899999988743333 468889999999999997433   23322 23457899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG  251 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (352)
                      ..+...+++|+-|+.|++|+++..+     ..+.+    .||..+|+.|..+|+|.++.+-+.|.++++||++-...   
T Consensus       183 ~d~s~qv~sggIdn~ikvWd~r~~d-----~~~~l----sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p---  250 (338)
T KOG0265|consen  183 KDTSDQVISGGIDNDIKVWDLRKND-----GLYTL----SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP---  250 (338)
T ss_pred             cccccceeeccccCceeeeccccCc-----ceEEe----ecccCceeeEEeccCCCccccccccceEEEEEecccCC---
Confidence            9999999999999999999876543     23333    48999999999999999999999999999999863211   


Q ss_pred             CCCccceeeEEeecc---cCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEec
Q 018675          252 DGYASWRHLCTISGY---HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS  327 (352)
Q Consensus       252 ~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  327 (352)
                          ..+....+.+.   .+......+|+|++ .+.+|+.|..+++|+...         ..++.++.||.+.|++++|+
T Consensus       251 ----~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~---------r~~lyklpGh~gsvn~~~Fh  317 (338)
T KOG0265|consen  251 ----SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS---------RRILYKLPGHYGSVNEVDFH  317 (338)
T ss_pred             ----CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc---------ccEEEEcCCcceeEEEeeec
Confidence                11112222221   23345667899976 688899999999996543         34566789999999999999


Q ss_pred             CCCcceEEEecCCCeEEEEee
Q 018675          328 PGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       328 p~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      |..+ +|.+++.|++|.+=++
T Consensus       318 p~e~-iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  318 PTEP-IILSCSSDKTIYLGEI  337 (338)
T ss_pred             CCCc-EEEEeccCceeEeecc
Confidence            9875 7789999999987544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.6e-34  Score=259.19  Aligned_cols=296  Identities=34%  Similarity=0.563  Sum_probs=231.1

Q ss_pred             eeeeecCC-ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           13 EIQTLEGH-TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        13 ~~~~~~gH-~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ....+.+| ...|.|+.|+|+      +..+++++.|+.+++|+......  ...... ..|...|+.++|+|+++++++
T Consensus       150 ~~~~~~~~~~~sv~~~~fs~~------g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l-~~h~~~v~~~~fs~d~~~l~s  220 (456)
T KOG0266|consen  150 LEQTLAGHECPSVTCVDFSPD------GRALAAASSDGLIRIWKLEGIKS--NLLREL-SGHTRGVSDVAFSPDGSYLLS  220 (456)
T ss_pred             eeeeecccccCceEEEEEcCC------CCeEEEccCCCcEEEeecccccc--hhhccc-cccccceeeeEECCCCcEEEE
Confidence            35566555 889999999997      56899999999999999854431  111112 458899999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      ++.|+++++||... ....+.++.+|...|++++|+|+++++++|+.|++|++||++.+   +++..+.+|...|++++|
T Consensus       221 ~s~D~tiriwd~~~-~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~---~~~~~l~~hs~~is~~~f  296 (456)
T KOG0266|consen  221 GSDDKTLRIWDLKD-DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG---ECVRKLKGHSDGISGLAF  296 (456)
T ss_pred             ecCCceEEEeeccC-CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC---eEEEeeeccCCceEEEEE
Confidence            99999999999832 23567888999999999999999999999999999999999763   577889999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcc--cEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccc
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS--TIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ  249 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  249 (352)
                      ++++..+++++.|+.|++||+......   +...+.    ++..  ++.++.|+|++.+++++..|+.+++|++......
T Consensus       297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~----~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  297 SPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLS----GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             CCCCCEEEEcCCCccEEEEECCCCcee---eeeccc----CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence            999999999999999999987654211   222222    2222  6999999999999999999999999998633211


Q ss_pred             cCCCCccceeeEEeecccC--cceEEEEecCC-ceEEecCCCCeEEEEEccCCccccCcccceeeeccccc-CcceeEEE
Q 018675          250 SGDGYASWRHLCTISGYHD--RTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH-DMDVNSVQ  325 (352)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~  325 (352)
                      .           ...+.+.  ..+++....+. ..+++|+.|+.+++|+...         ...++...+| ...+..++
T Consensus       370 ~-----------~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s---------~~~~~~l~~h~~~~~~~~~  429 (456)
T KOG0266|consen  370 G-----------TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS---------GGILQRLEGHSKAAVSDLS  429 (456)
T ss_pred             e-----------eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc---------cchhhhhcCCCCCceeccc
Confidence            0           0111111  13333333443 4899999999999997653         2334566788 88999999


Q ss_pred             ecCCCcceEEEec--CCCeEEEEeec
Q 018675          326 WSPGERRLLASAS--DDGMIKIWELA  349 (352)
Q Consensus       326 ~sp~~~~~l~s~~--~Dg~i~iw~~~  349 (352)
                      ++|.. +++++++  .|+.+++|...
T Consensus       430 ~~~~~-~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  430 SHPTE-NLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cCCCc-CeeeecCcCCCceEEEecCC
Confidence            99976 5788888  79999999864

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=5.7e-36  Score=253.88  Aligned_cols=298  Identities=23%  Similarity=0.415  Sum_probs=232.7

Q ss_pred             ceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE
Q 018675           10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL   89 (352)
Q Consensus        10 ~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l   89 (352)
                      +.+.+.++.||++.|+++.|.|..     +.+|+++|.|+.|+||+......   +...+ ..|..+|.+++|+++|+.+
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~-----~hLlLS~gmD~~vklW~vy~~~~---~lrtf-~gH~k~Vrd~~~s~~g~~f  273 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKK-----GHLLLSGGMDGLVKLWNVYDDRR---CLRTF-KGHRKPVRDASFNNCGTSF  273 (503)
T ss_pred             cHhheeeccCCccccchhhhccce-----eeEEEecCCCceEEEEEEecCcc---eehhh-hcchhhhhhhhccccCCee
Confidence            346778899999999999999954     57999999999999999876432   23333 4699999999999999999


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeE
Q 018675           90 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM  168 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~  168 (352)
                      ++++.|+.+++||.++|..  ...+. -...+.|+.|+|++ +.|++|+.|+.|+.||++.++   .+..+..|-..|..
T Consensus       274 LS~sfD~~lKlwDtETG~~--~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---vvqeYd~hLg~i~~  347 (503)
T KOG0282|consen  274 LSASFDRFLKLWDTETGQV--LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---VVQEYDRHLGAILD  347 (503)
T ss_pred             eeeecceeeeeeccccceE--EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH---HHHHHHhhhhheee
Confidence            9999999999999998853  43332 24568899999988 789999999999999998764   34556778889999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc-c
Q 018675          169 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT-R  247 (352)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-~  247 (352)
                      +.|-+.+..+++.+.|++++||+....-.     ++.   ....+.....++..+|++..++.-+.|+.|.+|.+... +
T Consensus       348 i~F~~~g~rFissSDdks~riWe~~~~v~-----ik~---i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r  419 (503)
T KOG0282|consen  348 ITFVDEGRRFISSSDDKSVRIWENRIPVP-----IKN---IADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR  419 (503)
T ss_pred             eEEccCCceEeeeccCccEEEEEcCCCcc-----chh---hcchhhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence            99999999999999999999997654321     111   11123345678999999999999999999999986532 1


Q ss_pred             cccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEe
Q 018675          248 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW  326 (352)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  326 (352)
                      +......+    -+..    .+--..+.++|++ +|++|.+||.+.+|+.+..         .++.+..+|++.+..+.|
T Consensus       420 ~nkkK~fe----Gh~v----aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~---------kl~~~lkah~~~ci~v~w  482 (503)
T KOG0282|consen  420 LNKKKRFE----GHSV----AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT---------KLVSKLKAHDQPCIGVDW  482 (503)
T ss_pred             cCHhhhhc----ceec----cCceeeEEEcCCCCeEEeecCCccEEEeechhh---------hhhhccccCCcceEEEEe
Confidence            11110000    0111    1223457888876 8999999999999976532         334567899999999999


Q ss_pred             cCCCcceEEEecCCCeEEEEe
Q 018675          327 SPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       327 sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      +|....-+||+|.||.|++|+
T Consensus       483 HP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  483 HPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cCCCcceeEecccCceeEecC
Confidence            999888899999999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.9e-35  Score=263.28  Aligned_cols=208  Identities=30%  Similarity=0.561  Sum_probs=182.3

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      ..+|.||.++|++..|+|++      .+|+|||.|+++|+|.+.+..    +. ...+.|..+|..+.|+|-|-++||++
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~------rfLlScSED~svRLWsl~t~s----~~-V~y~GH~~PVwdV~F~P~GyYFatas  512 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDR------RFLLSCSEDSSVRLWSLDTWS----CL-VIYKGHLAPVWDVQFAPRGYYFATAS  512 (707)
T ss_pred             eEEeecCCCceeeeeecccc------cceeeccCCcceeeeecccce----eE-EEecCCCcceeeEEecCCceEEEecC
Confidence            34589999999999999984      799999999999999998753    22 23357999999999999999999999


Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                      .|++.++|.....  .+...+.+|.+.|.|+.|+|+.+++++||.|++|++||+.++.   .++.+.||..+|.+++|+|
T Consensus       513 ~D~tArLWs~d~~--~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~---~VRiF~GH~~~V~al~~Sp  587 (707)
T KOG0263|consen  513 HDQTARLWSTDHN--KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN---SVRIFTGHKGPVTALAFSP  587 (707)
T ss_pred             CCceeeeeecccC--CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc---EEEEecCCCCceEEEEEcC
Confidence            9999999986543  4455678999999999999999999999999999999998775   4778899999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       174 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      +|.+|++|+.|+.|.+||+....         +.....+|++.|.+|.|+.+|..||+||.|+.|++||+...
T Consensus       588 ~Gr~LaSg~ed~~I~iWDl~~~~---------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  588 CGRYLASGDEDGLIKIWDLANGS---------LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             CCceEeecccCCcEEEEEcCCCc---------chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999999999999999886642         12234589999999999999999999999999999998643

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.3e-35  Score=239.10  Aligned_cols=291  Identities=29%  Similarity=0.474  Sum_probs=239.3

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      .+.+.+.||...|+.+-|+|+.      ..+++++.|+++++||..++.-    .. .-+.|+..|.+++|+..|++|++
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~------~~v~~as~d~tikv~D~~tg~~----e~-~LrGHt~sv~di~~~a~Gk~l~t  167 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSE------ALVVSASEDATIKVFDTETGEL----ER-SLRGHTDSVFDISFDASGKYLAT  167 (406)
T ss_pred             CchhhhhccccceeeeeeccCc------eEEEEecCCceEEEEEccchhh----hh-hhhccccceeEEEEecCccEEEe
Confidence            4556788999999999999974      6889999999999999987642    11 22568999999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      ++.|-.+++||..+. ..++..+.+|...|.++.|-|.|.++++++.|.+|+.|++..+   .++..+.+|.+-+..++.
T Consensus       168 cSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg---~cv~t~~~h~ewvr~v~v  243 (406)
T KOG0295|consen  168 CSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG---YCVKTFPGHSEWVRMVRV  243 (406)
T ss_pred             cCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc---eeEEeccCchHhEEEEEe
Confidence            999999999997543 4567778899999999999999999999999999999998755   578889999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC---------------CCEEEEEeCCC
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK---------------GDKLVSCSDDL  236 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---------------~~~l~s~~~dg  236 (352)
                      +.|+.++++++.|.++++|-+...     .|...    ...|+-+|-+++|-|.               +.++.+++.|+
T Consensus       244 ~~DGti~As~s~dqtl~vW~~~t~-----~~k~~----lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk  314 (406)
T KOG0295|consen  244 NQDGTIIASCSNDQTLRVWVVATK-----QCKAE----LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK  314 (406)
T ss_pred             cCCeeEEEecCCCceEEEEEeccc-----hhhhh----hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence            999999999999999999965442     12222    2368888888888652               25899999999


Q ss_pred             cEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeeccc
Q 018675          237 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEK  315 (352)
Q Consensus       237 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~  315 (352)
                      +||+||+.....           +-++ ..|++.|..++++|.| +++++..|+++++|+....         .......
T Consensus       315 tIk~wdv~tg~c-----------L~tL-~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---------~cmk~~~  373 (406)
T KOG0295|consen  315 TIKIWDVSTGMC-----------LFTL-VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---------QCMKTLE  373 (406)
T ss_pred             eEEEEeccCCeE-----------EEEE-ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---------eeeeccC
Confidence            999999864321           1122 3488899999999977 8999999999999977542         2233455


Q ss_pred             ccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          316 AHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       316 ~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      .|..-+++++|+-+-. +++||+-|.++++|+.
T Consensus       374 ah~hfvt~lDfh~~~p-~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  374 AHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCcceeEEEecCCCCc-eEEeccccceeeeeec
Confidence            8888999999987765 6889999999999985

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-33  Score=222.37  Aligned_cols=299  Identities=20%  Similarity=0.324  Sum_probs=223.0

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      -|+||..+++.|.++.+      +.+|+||+.|.+..+|-...++.+..    + ..|++.|.||..+-+.+.+++|+.|
T Consensus         5 ~l~GHERplTqiKyN~e------GDLlFscaKD~~~~vw~s~nGerlGt----y-~GHtGavW~~Did~~s~~liTGSAD   73 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNRE------GDLLFSCAKDSTPTVWYSLNGERLGT----Y-DGHTGAVWCCDIDWDSKHLITGSAD   73 (327)
T ss_pred             ccccCccccceEEecCC------CcEEEEecCCCCceEEEecCCceeee----e-cCCCceEEEEEecCCcceeeecccc
Confidence            47899999999999886      68999999999999997656654332    2 5699999999999999999999999


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-----CCcEEEEecCCCC----eeEEEEEeecCccCe
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-----DKSVWIWEVMPGN----EFECVSVLQGHAQDV  166 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----d~~v~vwd~~~~~----~~~~~~~~~~h~~~v  166 (352)
                      .++++||..+++  ++..++ ...+|+.+.|+++|++++.+.+     .+.|.++|++...    ..++...+..+...+
T Consensus        74 ~t~kLWDv~tGk--~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski  150 (327)
T KOG0643|consen   74 QTAKLWDVETGK--QLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI  150 (327)
T ss_pred             ceeEEEEcCCCc--EEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence            999999999885  455554 4678999999999998776644     4689999987433    233455666777889


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          167 KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      +.+-|.|-++++++|.+||.|.+||.....        .+......|...|+.++++|+..++++++.|.+-++||....
T Consensus       151 t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~--------~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl  222 (327)
T KOG0643|consen  151 TSALWGPLGETIIAGHEDGSISIYDARTGK--------ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL  222 (327)
T ss_pred             eeeeecccCCEEEEecCCCcEEEEEcccCc--------eeeechhhhccccccccccCCcceEEecccCccceeeeccce
Confidence            999999999999999999999999876531        122233358889999999999999999999999999997532


Q ss_pred             ccccCCCCccceeeEEeecccCcceEEEEecCC-ceEEecCCCCeEEEEEc-cCCccccCcccc----eeeecccccCcc
Q 018675          247 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVE-SKDDLIDGPSYK----MLLKKEKAHDMD  320 (352)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~-~~~~~~~~~~~~----~~~~~~~~h~~~  320 (352)
                      .           .+.++.  .+.++.+.+++|- ..++.|+.....-+-.. .....++....+    +.+...++|-++
T Consensus       223 ~-----------v~Kty~--te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP  289 (327)
T KOG0643|consen  223 E-----------VLKTYT--TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP  289 (327)
T ss_pred             e-----------eEEEee--ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC
Confidence            1           111221  2445666677773 33444433333322211 112222222222    223456899999


Q ss_pred             eeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          321 VNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       321 i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      |++++|+|+|+ .++|||+||.|||--++.
T Consensus       290 INsvAfhPdGk-sYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  290 INSVAFHPDGK-SYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cceeEECCCCc-ccccCCCCceEEEEEecc
Confidence            99999999997 689999999999976543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.5e-33  Score=221.76  Aligned_cols=250  Identities=32%  Similarity=0.603  Sum_probs=208.2

Q ss_pred             cCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCc
Q 018675           18 EGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDAT   97 (352)
Q Consensus        18 ~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   97 (352)
                      .+|+..|.+++|+|.      +++||+||.|.++-||....+.  +.+...+ +.|...|.+++|+++|++||+++.|++
T Consensus        58 ~~hkrsVRsvAwsp~------g~~La~aSFD~t~~Iw~k~~~e--fecv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKS  128 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPH------GRYLASASFDATVVIWKKEDGE--FECVATL-EGHENEVKCVAWSASGNYLATCSRDKS  128 (312)
T ss_pred             ccchheeeeeeecCC------CcEEEEeeccceEEEeecCCCc--eeEEeee-eccccceeEEEEcCCCCEEEEeeCCCe
Confidence            479999999999997      6899999999999999876543  2344444 569999999999999999999999999


Q ss_pred             EEEEEcc-CCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC
Q 018675           98 TCIWEDV-GGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD  176 (352)
Q Consensus        98 i~i~~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  176 (352)
                      +=||... ..++.+...++.|.+.|.-+.|+|...+|+++|.|++|++|+-..+...+++..+.+|..-|.+++|+|.+.
T Consensus       129 VWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~  208 (312)
T KOG0645|consen  129 VWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS  208 (312)
T ss_pred             EEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc
Confidence            9999764 467889999999999999999999999999999999999999765777889999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCcc
Q 018675          177 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYAS  256 (352)
Q Consensus       177 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  256 (352)
                      .|++++.|++++||....          .+   ...|..++..+.|.  ...|+|++.|+.|++|.-... ..    -..
T Consensus       209 rl~s~sdD~tv~Iw~~~~----------~~---~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~-~d----~p~  268 (312)
T KOG0645|consen  209 RLVSCSDDGTVSIWRLYT----------DL---SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS-PD----EPS  268 (312)
T ss_pred             eEEEecCCcceEeeeecc----------Cc---chhcccceEeeeec--ccceEeccCCCEEEEEEecCC-CC----Cch
Confidence            999999999999994221          11   12466789999998  457999999999999954311 00    122


Q ss_pred             ceeeEEeecccCcceEEEEecC--CceEEecCCCCeEEEEEc
Q 018675          257 WRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVE  296 (352)
Q Consensus       257 ~~~~~~~~~~~~~~i~~~~~~~--~~~~~s~~~d~~v~~~~~  296 (352)
                      |.........|+..|.++.|.|  .+++++++.||.+++|..
T Consensus       269 ~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  269 WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL  310 (312)
T ss_pred             HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence            3334444456888999999999  579999999999999954

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.4e-32  Score=234.80  Aligned_cols=287  Identities=35%  Similarity=0.632  Sum_probs=225.1

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      +.++++|.+.|++++|+|+      ++++++++.|+.+++|+..+.....     ....|...+..+.|+|+++.+++++
T Consensus         2 ~~~~~~h~~~i~~~~~~~~------~~~l~~~~~~g~i~i~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~   70 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPD------GKLLATGSGDGTIKVWDLETGELLR-----TLKGHTGPVRDVAASADGTYLASGS   70 (289)
T ss_pred             chHhcccCCCEEEEEEcCC------CCEEEEeecCcEEEEEEeeCCCcEE-----EEecCCcceeEEEECCCCCEEEEEc
Confidence            3567899999999999997      4689999999999999987654211     1134777888999999999999999


Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                      .|+.+.+|+...++  ....+..|...+.++.|++++.++++++.|+.+.+||+...   .....+..|...+.++.|+|
T Consensus        71 ~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~  145 (289)
T cd00200          71 SDKTIRLWDLETGE--CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG---KCLTTLRGHTDWVNSVAFSP  145 (289)
T ss_pred             CCCeEEEEEcCccc--ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc---EEEEEeccCCCcEEEEEEcC
Confidence            99999999987642  34556688889999999999888888888999999998643   33455667888999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCC
Q 018675          174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG  253 (352)
Q Consensus       174 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  253 (352)
                      ++.++++++.|+.+++|++....     ....+    ..|...|.++.|+|+++.+++++.|+.+++||++..+.     
T Consensus       146 ~~~~l~~~~~~~~i~i~d~~~~~-----~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-----  211 (289)
T cd00200         146 DGTFVASSSQDGTIKLWDLRTGK-----CVATL----TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-----  211 (289)
T ss_pred             cCCEEEEEcCCCcEEEEEccccc-----cceeE----ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce-----
Confidence            98888888889999999875321     12222    25677899999999999999999999999999753221     


Q ss_pred             CccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcc
Q 018675          254 YASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR  332 (352)
Q Consensus       254 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~  332 (352)
                            ...+ ..+...+.++.+++++ ++++++.++.+++|+....         ........|...|.+++|+|++. 
T Consensus       212 ------~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~-  274 (289)
T cd00200         212 ------LGTL-RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---------ECVQTLSGHTNSVTSLAWSPDGK-  274 (289)
T ss_pred             ------ecch-hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---------eeEEEccccCCcEEEEEECCCCC-
Confidence                  1111 1245578889999866 5556666999999976431         12233447888999999999875 


Q ss_pred             eEEEecCCCeEEEEe
Q 018675          333 LLASASDDGMIKIWE  347 (352)
Q Consensus       333 ~l~s~~~Dg~i~iw~  347 (352)
                      +|++++.||.+++|+
T Consensus       275 ~l~~~~~d~~i~iw~  289 (289)
T cd00200         275 RLASGSADGTIRIWD  289 (289)
T ss_pred             EEEEecCCCeEEecC
Confidence            678999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.8e-32  Score=264.24  Aligned_cols=304  Identities=21%  Similarity=0.302  Sum_probs=220.8

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeee-ee-eeeecceecceEEEEECC-CCCEEEEEe
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWN-CK-AVLEEMHTRTVRSCAWSP-SGKLLATAS   93 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~-~~-~~~~~~h~~~v~~~~~s~-~~~~l~s~~   93 (352)
                      +.+|.+.|++++|+|+      +.+|||||.|++|+||+......... .. ......+...|.+++|+| ++.+|++++
T Consensus       479 ~~~~~~~V~~i~fs~d------g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~  552 (793)
T PLN00181        479 LLNSSNLVCAIGFDRD------GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSN  552 (793)
T ss_pred             ccCCCCcEEEEEECCC------CCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEe
Confidence            4469999999999997      57999999999999999753210000 00 011122346789999987 578999999


Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEc
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH  172 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~  172 (352)
                      .|++|++||..++  ..+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+..+.   ++..+..+ ..+.++.|+
T Consensus       553 ~Dg~v~lWd~~~~--~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~---~~~~~~~~-~~v~~v~~~  626 (793)
T PLN00181        553 FEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV---SIGTIKTK-ANICCVQFP  626 (793)
T ss_pred             CCCeEEEEECCCC--eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc---EEEEEecC-CCeEEEEEe
Confidence            9999999998765  34667789999999999997 78899999999999999997654   33444444 578899995


Q ss_pred             -CCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC
Q 018675          173 -PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG  251 (352)
Q Consensus       173 -~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (352)
                       +++..+++|+.|+.|++||+.....    ....    ..+|...|.++.|. ++.+|++++.|++|++||++.....  
T Consensus       627 ~~~g~~latgs~dg~I~iwD~~~~~~----~~~~----~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~--  695 (793)
T PLN00181        627 SESGRSLAFGSADHKVYYYDLRNPKL----PLCT----MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG--  695 (793)
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCCc----cceE----ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc--
Confidence             5688999999999999998764321    1112    23788999999997 6789999999999999997532100  


Q ss_pred             CCCccceeeEEeecccCcceEEEEecCC-ceEEecCCCCeEEEEEccCCccccC---cccceee-ecccccCcceeEEEe
Q 018675          252 DGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDG---PSYKMLL-KKEKAHDMDVNSVQW  326 (352)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~---~~~~~~~-~~~~~h~~~i~~~~~  326 (352)
                         ..+..+..+. .|...+..+.++++ .++++|+.|+.+.+|..........   .....+. .....|...|.+++|
T Consensus       696 ---~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~w  771 (793)
T PLN00181        696 ---INETPLHSFM-GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCW  771 (793)
T ss_pred             ---cCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEE
Confidence               0112223333 35667778888875 4899999999999997543211000   0000000 012346678999999


Q ss_pred             cCCCcceEEEecCCCeEEEEee
Q 018675          327 SPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       327 sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      +|++. .|++|+.||.|+||++
T Consensus       772 s~~~~-~lva~~~dG~I~i~~~  792 (793)
T PLN00181        772 RGQSS-TLVAANSTGNIKILEM  792 (793)
T ss_pred             cCCCC-eEEEecCCCcEEEEec
Confidence            99986 5789999999999986

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.4e-32  Score=242.13  Aligned_cols=302  Identities=21%  Similarity=0.370  Sum_probs=231.1

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCC-CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGD-KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D-~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      .+++.|.--...|..++|+..      |..+|-|+.. |++-||++.+..-+  .++   ..|-..+++++++|||+++|
T Consensus       298 ~lih~LSis~~~I~t~~~N~t------GDWiA~g~~klgQLlVweWqsEsYV--lKQ---QgH~~~i~~l~YSpDgq~ia  366 (893)
T KOG0291|consen  298 NLIHSLSISDQKILTVSFNST------GDWIAFGCSKLGQLLVWEWQSESYV--LKQ---QGHSDRITSLAYSPDGQLIA  366 (893)
T ss_pred             eEEEEeecccceeeEEEeccc------CCEEEEcCCccceEEEEEeecccee--eec---cccccceeeEEECCCCcEEE
Confidence            555666555667888888875      5677777654 89999999865321  121   35888999999999999999


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecC-ccCeeEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH-AQDVKMV  169 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h-~~~v~~~  169 (352)
                      +|+.||+|++||...+  -|..++..|++.|+.+.|+..|+.+++++-||+|+.||+...+.   .+++... ..+..|+
T Consensus       367 TG~eDgKVKvWn~~Sg--fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN---fRTft~P~p~Qfscv  441 (893)
T KOG0291|consen  367 TGAEDGKVKVWNTQSG--FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN---FRTFTSPEPIQFSCV  441 (893)
T ss_pred             eccCCCcEEEEeccCc--eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce---eeeecCCCceeeeEE
Confidence            9999999999998765  57889999999999999999999999999999999999976654   3444332 2356788


Q ss_pred             EEcCCCCEEEEEeCCC-cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccc
Q 018675          170 QWHPTMDVLFSCSYDN-TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM  248 (352)
Q Consensus       170 ~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~  248 (352)
                      +..|.+..+.+|+.|. .|.+|.+...         .+.....||+++|.+|+|+|++..|+|++.|.+||+|++-.   
T Consensus       442 avD~sGelV~AG~~d~F~IfvWS~qTG---------qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~---  509 (893)
T KOG0291|consen  442 AVDPSGELVCAGAQDSFEIFVWSVQTG---------QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS---  509 (893)
T ss_pred             EEcCCCCEEEeeccceEEEEEEEeecC---------eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec---
Confidence            8999999999999887 6999976543         23345679999999999999999999999999999998631   


Q ss_pred             ccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCcccc----------Cc-ccceeeecccc
Q 018675          249 QSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID----------GP-SYKMLLKKEKA  316 (352)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~----------~~-~~~~~~~~~~~  316 (352)
                             .+....++.  ....+..+++.|+| .++.+..||.+.+|+........          +. ....+..+...
T Consensus       510 -------s~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa  580 (893)
T KOG0291|consen  510 -------SSGTVETLE--IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA  580 (893)
T ss_pred             -------cCceeeeEe--eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence                   112222222  23457788999987 79999999999999876432221          10 11222233344


Q ss_pred             cCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          317 HDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       317 h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      .....+.+.+|+||. .+++||..+.|.||++..+
T Consensus       581 ~~K~Ftti~ySaDG~-~IlAgG~sn~iCiY~v~~~  614 (893)
T KOG0291|consen  581 KGKTFTTICYSADGK-CILAGGESNSICIYDVPEG  614 (893)
T ss_pred             cCCceEEEEEcCCCC-EEEecCCcccEEEEECchh
Confidence            557899999999997 5668999999999999764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.2e-34  Score=236.67  Aligned_cols=291  Identities=26%  Similarity=0.439  Sum_probs=223.0

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      .+..-....+.|+|+.+..        ..++||+.|++|++||..+..    +...+ ..|+++|.|+.|.  .+.|++|
T Consensus       189 rinc~Se~skgVYClQYDD--------~kiVSGlrDnTikiWD~n~~~----c~~~L-~GHtGSVLCLqyd--~rviisG  253 (499)
T KOG0281|consen  189 RINCRSENSKGVYCLQYDD--------EKIVSGLRDNTIKIWDKNSLE----CLKIL-TGHTGSVLCLQYD--ERVIVSG  253 (499)
T ss_pred             eecCCcccCCceEEEEecc--------hhhhcccccCceEEeccccHH----HHHhh-hcCCCcEEeeecc--ceEEEec
Confidence            3333334678999998754        468999999999999987643    22222 4699999999886  4699999


Q ss_pred             eCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEc
Q 018675           93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH  172 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~  172 (352)
                      +.|.++++||..++  +++.++-+|.++|..+.|+.  .++++++.|.++.+||+.......+.+.+.||-..|+.++|+
T Consensus       254 SSDsTvrvWDv~tg--e~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd  329 (499)
T KOG0281|consen  254 SSDSTVRVWDVNTG--EPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD  329 (499)
T ss_pred             CCCceEEEEeccCC--chhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc
Confidence            99999999999887  46778889999999999975  689999999999999997655444556788999999999995


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCC
Q 018675          173 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD  252 (352)
Q Consensus       173 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  252 (352)
                        .++++++|.|++|++|++..     ..++.++    .||.-.|.++.+.  ++++++|+.|.+|++||+.-.....  
T Consensus       330 --~kyIVsASgDRTikvW~~st-----~efvRtl----~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLR--  394 (499)
T KOG0281|consen  330 --DKYIVSASGDRTIKVWSTST-----CEFVRTL----NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR--  394 (499)
T ss_pred             --cceEEEecCCceEEEEeccc-----eeeehhh----hcccccceehhcc--CeEEEecCCCceEEEEeccccHHHH--
Confidence              45999999999999996543     2344443    5899999998874  8899999999999999976432110  


Q ss_pred             CCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcc
Q 018675          253 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR  332 (352)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~  332 (352)
                                +...|+.-+.++.|+ +..+++|+.||+|++|+.........+.....+.....|++.|..+.|.  ..+
T Consensus       395 ----------vLeGHEeLvRciRFd-~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fq  461 (499)
T KOG0281|consen  395 ----------VLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQ  461 (499)
T ss_pred             ----------HHhchHHhhhheeec-CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceE
Confidence                      011355556677764 4678999999999999765433222223333445667899999999995  444


Q ss_pred             eEEEecCCCeEEEEeeccC
Q 018675          333 LLASASDDGMIKIWELANT  351 (352)
Q Consensus       333 ~l~s~~~Dg~i~iw~~~~~  351 (352)
                       +++++.|.+|.|||+.+.
T Consensus       462 -IvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  462 -IISSSHDDTILIWDFLNG  479 (499)
T ss_pred             -EEeccCCCeEEEEEcCCC
Confidence             678999999999998654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.4e-33  Score=246.66  Aligned_cols=293  Identities=25%  Similarity=0.410  Sum_probs=233.3

Q ss_pred             eeeeeecCCccceEEEEEc-cCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           12 REIQTLEGHTDRVWSLAWK-PTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~-p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      +....+.|..+.|.+|.|- |.      ..++|.+++.+.+|+|+..+...      .+...|+..|.++....+|-+|+
T Consensus       314 ~i~k~ivG~ndEI~Dm~~lG~e------~~~laVATNs~~lr~y~~~~~~c------~ii~GH~e~vlSL~~~~~g~lla  381 (775)
T KOG0319|consen  314 TIVKQIVGYNDEILDMKFLGPE------ESHLAVATNSPELRLYTLPTSYC------QIIPGHTEAVLSLDVWSSGDLLA  381 (775)
T ss_pred             EEehhhcCCchhheeeeecCCc------cceEEEEeCCCceEEEecCCCce------EEEeCchhheeeeeecccCcEEE
Confidence            4556677999999999984 44      36899999999999998776532      24467999999999666789999


Q ss_pred             EEeCCCcEEEEEccC--CceeeeEeeccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEE--E----EEeec
Q 018675           91 TASFDATTCIWEDVG--GDYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFEC--V----SVLQG  161 (352)
Q Consensus        91 s~~~d~~i~i~~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~--~----~~~~~  161 (352)
                      ||+.|.++++|....  ....++....+|+..|.+++++..+ .+|+++|.|+++++|+++..++...  .    .....
T Consensus       382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a  461 (775)
T KOG0319|consen  382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA  461 (775)
T ss_pred             EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence            999999999997632  2233455667999999999997654 5899999999999999875322111  1    13347


Q ss_pred             CccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          162 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       162 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iw  241 (352)
                      |...|++++.+|+..++++||.|.+.+||++++.     ...    ....||...|+++.|+|..+.++|++.|.+||||
T Consensus       462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-----~l~----~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW  532 (775)
T KOG0319|consen  462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-----RLL----GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIW  532 (775)
T ss_pred             hcccccceEecCCCceEEecccccceeeecccCc-----eEE----EEeeCCccceEEEEeccccceeEeccCCceEEEE
Confidence            9999999999999999999999999999987632     223    3345899999999999999999999999999999


Q ss_pred             cCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcc
Q 018675          242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD  320 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  320 (352)
                      .+...           .=+.++. .|...+....|-.++ .++++++||.+++|..+..         .+...+.+|+..
T Consensus       533 ~is~f-----------SClkT~e-GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~---------eC~~tlD~H~Dr  591 (775)
T KOG0319|consen  533 SISTF-----------SCLKTFE-GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN---------ECEMTLDAHNDR  591 (775)
T ss_pred             Eeccc-----------eeeeeec-CccceeEeeeeeeCCcEEEeccCCCcEEEEeccch---------hhhhhhhhccce
Confidence            87532           1122333 367778888777755 8999999999999976543         344567899999


Q ss_pred             eeEEEecCCCcceEEEecCCCeEEEEe
Q 018675          321 VNSVQWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       321 i~~~~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      |.+++-+|.+. +++|||.||.|.+|.
T Consensus       592 vWaL~~~~~~~-~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  592 VWALSVSPLLD-MFVTGGGDGRIIFWK  617 (775)
T ss_pred             eEEEeecCccc-eeEecCCCeEEEEee
Confidence            99999999876 889999999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.4e-33  Score=246.21  Aligned_cols=310  Identities=27%  Similarity=0.406  Sum_probs=234.7

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      -++..|+||-+.|+++.|+|..+    ...|++|+.|+++++||+.+...   +.. ....|...|++++|++|+..+++
T Consensus       138 ~~th~fkG~gGvVssl~F~~~~~----~~lL~sg~~D~~v~vwnl~~~~t---cl~-~~~~H~S~vtsL~~~~d~~~~ls  209 (775)
T KOG0319|consen  138 YCTHSFKGHGGVVSSLLFHPHWN----RWLLASGATDGTVRVWNLNDKRT---CLH-TMILHKSAVTSLAFSEDSLELLS  209 (775)
T ss_pred             EEEEEecCCCceEEEEEeCCccc----hhheeecCCCceEEEEEcccCch---HHH-HHHhhhhheeeeeeccCCceEEE
Confidence            45678999999999999999754    46899999999999999985432   221 22458888999999988888888


Q ss_pred             EeCCCcEEEEEccCCc--------------------------ee------------------------------------
Q 018675           92 ASFDATTCIWEDVGGD--------------------------YE------------------------------------  109 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~--------------------------~~------------------------------------  109 (352)
                      ++.|..+.+||....+                          +.                                    
T Consensus       210 ~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~  289 (775)
T KOG0319|consen  210 VGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLA  289 (775)
T ss_pred             eccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhccee
Confidence            8888777777631100                          00                                    


Q ss_pred             -------------------------------------------------------------------eeEeeccccCCee
Q 018675          110 -------------------------------------------------------------------CVATLEGHENEVK  122 (352)
Q Consensus       110 -------------------------------------------------------------------~~~~~~~h~~~v~  122 (352)
                                                                                         .-..+.||+..|.
T Consensus       290 ~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vl  369 (775)
T KOG0319|consen  290 IESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVL  369 (775)
T ss_pred             ccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhhee
Confidence                                                                               0012346888888


Q ss_pred             EEEECCCCcEEEEeeCCCcEEEEecCCC-CeeEEEEEeecCccCeeEEEEcCCC-CEEEEEeCCCcEEEEecCCCCCCCc
Q 018675          123 SVSWNASGTLLATCGRDKSVWIWEVMPG-NEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNW  200 (352)
Q Consensus       123 ~v~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~  200 (352)
                      +++...+|.+|+|||.|+++++|.+... ....++....+|+..|.+++++..+ .+|+++|.|+++++|.+........
T Consensus       370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~  449 (775)
T KOG0319|consen  370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF  449 (775)
T ss_pred             eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence            8885556789999999999999998332 2334455677899999999996543 5899999999999998766211111


Q ss_pred             eeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCC-
Q 018675          201 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-  279 (352)
Q Consensus       201 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  279 (352)
                      ..........-.|...|++++++|+..+++|||.|.+.+||+++.           ......+. .|...++++.|++. 
T Consensus       450 ~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-----------~~l~~vLs-GH~RGvw~V~Fs~~d  517 (775)
T KOG0319|consen  450 PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-----------LRLLGVLS-GHTRGVWCVSFSKND  517 (775)
T ss_pred             cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-----------ceEEEEee-CCccceEEEEecccc
Confidence            111111112247999999999999999999999999999998752           12334444 47888999999995 


Q ss_pred             ceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          280 GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       280 ~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      ..++++|.|+++++|....         ..+++++.||...|..++|-.++++ |+|++.||.||||++.+.
T Consensus       518 q~laT~SgD~TvKIW~is~---------fSClkT~eGH~~aVlra~F~~~~~q-liS~~adGliKlWnikt~  579 (775)
T KOG0319|consen  518 QLLATCSGDKTVKIWSIST---------FSCLKTFEGHTSAVLRASFIRNGKQ-LISAGADGLIKLWNIKTN  579 (775)
T ss_pred             ceeEeccCCceEEEEEecc---------ceeeeeecCccceeEeeeeeeCCcE-EEeccCCCcEEEEeccch
Confidence            5899999999999997653         2456778999999999999988876 679999999999999753

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.5e-34  Score=236.32  Aligned_cols=258  Identities=25%  Similarity=0.458  Sum_probs=210.4

Q ss_pred             ccCCccceeeeee------ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecce
Q 018675            4 LDDGNYELREIQT------LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTV   77 (352)
Q Consensus         4 ~~~~~~~~~~~~~------~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v   77 (352)
                      ...|+|.+.....      ++.|...|.++.|+++      +..++||..||.|++|+.....     ...+...|...|
T Consensus       115 s~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~------g~wmiSgD~gG~iKyWqpnmnn-----Vk~~~ahh~eaI  183 (464)
T KOG0284|consen  115 SQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHN------GTWMISGDKGGMIKYWQPNMNN-----VKIIQAHHAEAI  183 (464)
T ss_pred             cccccEEEecCceeeHHHHhhhhcccceeEEEccC------CCEEEEcCCCceEEecccchhh-----hHHhhHhhhhhh
Confidence            4567777655543      4589999999999997      5799999999999999876432     223334566899


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEE
Q 018675           78 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS  157 (352)
Q Consensus        78 ~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  157 (352)
                      ++++|+|+...+++++.||+|+|||......  ...+.+|.-.|++++|+|...+++++|.|+.|++||.+++   .|+.
T Consensus       184 RdlafSpnDskF~t~SdDg~ikiWdf~~~ke--e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg---~cl~  258 (464)
T KOG0284|consen  184 RDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE--ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG---SCLA  258 (464)
T ss_pred             heeccCCCCceeEEecCCCeEEEEeccCCch--hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc---chhh
Confidence            9999999999999999999999999765432  3356899999999999999999999999999999998765   4778


Q ss_pred             EeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC-CCEEEEEeCCC
Q 018675          158 VLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDL  236 (352)
Q Consensus       158 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~~~dg  236 (352)
                      ++.+|...|+.+.|.|++++|+++|.|..++++|++. ..       .+ ....+|...|+++.|+|- ..+|.+|+.||
T Consensus       259 tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-mk-------El-~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg  329 (464)
T KOG0284|consen  259 TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-MK-------EL-FTYRGHKKDVTSLTWHPLNESLFTSGGSDG  329 (464)
T ss_pred             hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-hH-------HH-HHhhcchhhheeeccccccccceeeccCCC
Confidence            8899999999999999999999999999999998762 11       11 123479999999999995 56788999999


Q ss_pred             cEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEcc
Q 018675          237 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES  297 (352)
Q Consensus       237 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~  297 (352)
                      .|..|.+...+.           +..+...|+..|++++|.|=| ++++|+.|.++++|...
T Consensus       330 svvh~~v~~~~p-----------~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  330 SVVHWVVGLEEP-----------LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             ceEEEecccccc-----------ccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            999998753322           222334588999999999965 78899999999999654

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.7e-31  Score=226.00  Aligned_cols=279  Identities=26%  Similarity=0.497  Sum_probs=221.3

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEE
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW  101 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~  101 (352)
                      ..|++++|+.+      +.+||+|+.||.+|+|+......     ..+ ..|+++|.++.|+..|.+|++++.|+++.+|
T Consensus       236 kdVT~L~Wn~~------G~~LatG~~~G~~riw~~~G~l~-----~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttilw  303 (524)
T KOG0273|consen  236 KDVTSLDWNND------GTLLATGSEDGEARIWNKDGNLI-----STL-GQHKGPIFSLKWNKKGTYILSGGVDGTTILW  303 (524)
T ss_pred             CCcceEEecCC------CCeEEEeecCcEEEEEecCchhh-----hhh-hccCCceEEEEEcCCCCEEEeccCCccEEEE
Confidence            58999999986      67999999999999999765421     111 4589999999999999999999999999999


Q ss_pred             EccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEE
Q 018675          102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC  181 (352)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  181 (352)
                      |..+++...  .+.-|..+--.|.|-.+ ..|++++.|+.|.|+.+....   ++.++.+|..+|.++.|.|++.+|+++
T Consensus       304 d~~~g~~~q--~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~---P~~t~~GH~g~V~alk~n~tg~LLaS~  377 (524)
T KOG0273|consen  304 DAHTGTVKQ--QFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDR---PVKTFIGHHGEVNALKWNPTGSLLASC  377 (524)
T ss_pred             eccCceEEE--eeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCC---cceeeecccCceEEEEECCCCceEEEe
Confidence            988876543  44456666577888654 568999999999999985443   466788999999999999999999999


Q ss_pred             eCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC---------CEEEEEeCCCcEEEEcCCccccccCC
Q 018675          182 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG---------DKLVSCSDDLTIKIWGADITRMQSGD  252 (352)
Q Consensus       182 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~  252 (352)
                      |.|++++||......     +..    .+.+|...|..+.|+|+|         ..+++++.|++|++||+...      
T Consensus       378 SdD~TlkiWs~~~~~-----~~~----~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------  442 (524)
T KOG0273|consen  378 SDDGTLKIWSMGQSN-----SVH----DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------  442 (524)
T ss_pred             cCCCeeEeeecCCCc-----chh----hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC------
Confidence            999999999755432     122    234789999999999965         46999999999999997532      


Q ss_pred             CCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCc
Q 018675          253 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER  331 (352)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  331 (352)
                           .+++.+. .|..++++++++|++ ++|+|+.||.+.+|......         +.+.. .-++.|..+.|+.+|.
T Consensus       443 -----v~i~~f~-kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~---------l~~s~-~~~~~Ifel~Wn~~G~  506 (524)
T KOG0273|consen  443 -----VPIHTLM-KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK---------LVKSY-QGTGGIFELCWNAAGD  506 (524)
T ss_pred             -----ceeEeec-cCCCceEEEEecCCCcEEEecCCCCeeEeccccchh---------eeEee-cCCCeEEEEEEcCCCC
Confidence                 2344443 478899999999987 89999999999999654322         22223 3445699999999997


Q ss_pred             ceEEEecCCCeEEEEeecc
Q 018675          332 RLLASASDDGMIKIWELAN  350 (352)
Q Consensus       332 ~~l~s~~~Dg~i~iw~~~~  350 (352)
                      + |..+..|+.+.+-|+++
T Consensus       507 k-l~~~~sd~~vcvldlr~  524 (524)
T KOG0273|consen  507 K-LGACASDGSVCVLDLRK  524 (524)
T ss_pred             E-EEEEecCCCceEEEecC
Confidence            5 55677799999988763

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.4e-31  Score=232.99  Aligned_cols=300  Identities=23%  Similarity=0.369  Sum_probs=222.8

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ....++.||.+.|.++.|+.+      ..+|++||.|.++|+|..+..+.+..  ..+ ..|+.+|.++-|..+...+.+
T Consensus       136 vl~r~~~g~fddi~si~Ws~D------Sr~l~~gsrD~s~rl~~v~~~k~~~~--~~l-~gHkd~VvacfF~~~~~~l~t  206 (893)
T KOG0291|consen  136 VLHRTYLGHFDDITSIDWSDD------SRLLVTGSRDLSARLFGVDGNKNLFT--YAL-NGHKDYVVACFFGANSLDLYT  206 (893)
T ss_pred             eEeeeecCCccceeEEEeccC------CceEEeccccceEEEEEeccccccce--Eec-cCCCcceEEEEeccCcceEEE
Confidence            555678899999999999987      36899999999999999876554221  122 459999999999999999999


Q ss_pred             EeCCCcEEEEEccC-----------------------Ccee----e-----eEeeccccCCeeEEEECCCCcEEEEeeCC
Q 018675           92 ASFDATTCIWEDVG-----------------------GDYE----C-----VATLEGHENEVKSVSWNASGTLLATCGRD  139 (352)
Q Consensus        92 ~~~d~~i~i~~~~~-----------------------~~~~----~-----~~~~~~h~~~v~~v~~~~~~~~l~s~~~d  139 (352)
                      .+.||.+.+|....                       ++..    .     ..-+......|++.+|++..+.|+++-..
T Consensus       207 vskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss  286 (893)
T KOG0291|consen  207 VSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS  286 (893)
T ss_pred             EecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence            99999999997540                       0000    0     01112223567777777776777777666


Q ss_pred             CcEEEEecCCCCee----------------------------------------EEEEEeecCccCeeEEEEcCCCCEEE
Q 018675          140 KSVWIWEVMPGNEF----------------------------------------ECVSVLQGHAQDVKMVQWHPTMDVLF  179 (352)
Q Consensus       140 ~~v~vwd~~~~~~~----------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~  179 (352)
                      |...+++++...-.                                        .-+...++|...+++++++||+++++
T Consensus       287 G~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~ia  366 (893)
T KOG0291|consen  287 GEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIA  366 (893)
T ss_pred             CeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEE
Confidence            66666655311100                                        01234568999999999999999999


Q ss_pred             EEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCcccee
Q 018675          180 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRH  259 (352)
Q Consensus       180 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  259 (352)
                      +|++|+.|++|+....     .|..++.    .|++.|+.++|+..|+.+++.+-||+||.||+...+           .
T Consensus       367 TG~eDgKVKvWn~~Sg-----fC~vTFt----eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr-----------N  426 (893)
T KOG0291|consen  367 TGAEDGKVKVWNTQSG-----FCFVTFT----EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR-----------N  426 (893)
T ss_pred             eccCCCcEEEEeccCc-----eEEEEec----cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc-----------e
Confidence            9999999999975443     5777765    589999999999999999999999999999986322           1


Q ss_pred             eEEeecccCcceEEEEecCCc-eEEecCCCC-eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEe
Q 018675          260 LCTISGYHDRTIFSVHWSREG-IIASGAADD-SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA  337 (352)
Q Consensus       260 ~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~-~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~  337 (352)
                      ..++.........+++.+|+| .+.+|+.|. .|.+|+...+.         ++-.+.||.++|.+++|+|.+. +|+|+
T Consensus       427 fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq---------llDiLsGHEgPVs~l~f~~~~~-~LaS~  496 (893)
T KOG0291|consen  427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ---------LLDILSGHEGPVSGLSFSPDGS-LLASG  496 (893)
T ss_pred             eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe---------eeehhcCCCCcceeeEEccccC-eEEec
Confidence            222333334445677888877 455555565 57888664432         3345689999999999999986 89999


Q ss_pred             cCCCeEEEEeecc
Q 018675          338 SDDGMIKIWELAN  350 (352)
Q Consensus       338 ~~Dg~i~iw~~~~  350 (352)
                      |+|++||+|++-.
T Consensus       497 SWDkTVRiW~if~  509 (893)
T KOG0291|consen  497 SWDKTVRIWDIFS  509 (893)
T ss_pred             cccceEEEEEeec
Confidence            9999999999853

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.7e-32  Score=210.95  Aligned_cols=236  Identities=21%  Similarity=0.366  Sum_probs=191.4

Q ss_pred             CEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCe
Q 018675           87 KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV  166 (352)
Q Consensus        87 ~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v  166 (352)
                      -+|++++.|.+|++|...+|  .|..+++..++.|+.+...|++..|++++. ..|++||+.+.++. ++..+.+|..+|
T Consensus        11 viLvsA~YDhTIRfWqa~tG--~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTG--ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVATFEGHTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeeehhcC--eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeEEeccCCce
Confidence            47899999999999998887  678888877789999999999999988876 56999999877654 678899999999


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          167 KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      +.+.|..+++.+++||+||+++|||++..     .+...     ..|.++|+++..+|+...|++|..+|.|++||+...
T Consensus        87 taVgF~~dgrWMyTgseDgt~kIWdlR~~-----~~qR~-----~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSL-----SCQRN-----YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             EEEEEeecCeEEEecCCCceEEEEeccCc-----ccchh-----ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence            99999999999999999999999987652     22222     246789999999999999999999999999998532


Q ss_pred             ccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEE
Q 018675          247 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ  325 (352)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  325 (352)
                      ...           +.+.+.....+.++...+++ +++++...|..++|......   ....-+.+.+++.|++.|+.+.
T Consensus       157 ~c~-----------~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~---~~s~l~P~~k~~ah~~~il~C~  222 (311)
T KOG0315|consen  157 SCT-----------HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ---TASELEPVHKFQAHNGHILRCL  222 (311)
T ss_pred             ccc-----------cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC---ccccceEhhheecccceEEEEE
Confidence            110           11122234567888888876 78888889999999765421   1222334556789999999999


Q ss_pred             ecCCCcceEEEecCCCeEEEEeeccC
Q 018675          326 WSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       326 ~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      +|||++ +|||+|.|++++||+++..
T Consensus       223 lSPd~k-~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  223 LSPDVK-YLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             ECCCCc-EEEeecCCceEEEEecCCc
Confidence            999986 7899999999999998764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.3e-31  Score=221.11  Aligned_cols=287  Identities=29%  Similarity=0.416  Sum_probs=218.4

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC---CCCEEEEEeCC
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP---SGKLLATASFD   95 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~~d   95 (352)
                      -|.+.|.++.-.+        +.++||+.||.+|+|+.....     .. ....|.++|.+++|--   ....+++++.|
T Consensus       103 ~hdDWVSsv~~~~--------~~IltgsYDg~~riWd~~Gk~-----~~-~~~Ght~~ik~v~~v~~n~~~~~fvsas~D  168 (423)
T KOG0313|consen  103 LHDDWVSSVKGAS--------KWILTGSYDGTSRIWDLKGKS-----IK-TIVGHTGPIKSVAWVIKNSSSCLFVSASMD  168 (423)
T ss_pred             cchhhhhhhcccC--------ceEEEeecCCeeEEEecCCce-----EE-EEecCCcceeeeEEEecCCccceEEEecCC
Confidence            3778887776543        689999999999999986532     12 2245999999888743   23469999999


Q ss_pred             CcEEEEEccCCcee--eeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCC----------------------C
Q 018675           96 ATTCIWEDVGGDYE--CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG----------------------N  151 (352)
Q Consensus        96 ~~i~i~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~----------------------~  151 (352)
                      .++++|....++..  ......||...|-+++..++|..+++|+.|.++++|+....                      .
T Consensus       169 qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~  248 (423)
T KOG0313|consen  169 QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGG  248 (423)
T ss_pred             ceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccc
Confidence            99999976554332  22333599999999999999999999999999999993211                      0


Q ss_pred             eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                      ...++..+.+|..+|.++.|.+ ...+++++.|.+|+.||+.....     ..++.     ....+++++++|...+|++
T Consensus       249 ~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~-----~~~~~-----~~ksl~~i~~~~~~~Ll~~  317 (423)
T KOG0313|consen  249 TRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL-----KSTLT-----TNKSLNCISYSPLSKLLAS  317 (423)
T ss_pred             ccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc-----eeeee-----cCcceeEeecccccceeee
Confidence            1224567889999999999987 56789999999999999875432     12221     2467899999999999999


Q ss_pred             EeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCCccccCcccce
Q 018675          232 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKM  309 (352)
Q Consensus       232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~~~~~~  309 (352)
                      |+.|..+++||.+...-       . -....+. .|.+.+.++.|+|..  ++++++.|+++++|+...        .+.
T Consensus       318 gssdr~irl~DPR~~~g-------s-~v~~s~~-gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS--------~k~  380 (423)
T KOG0313|consen  318 GSSDRHIRLWDPRTGDG-------S-VVSQSLI-GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS--------TKA  380 (423)
T ss_pred             cCCCCceeecCCCCCCC-------c-eeEEeee-cchhhhhheecCCCCceEEEEEecCCeEEEEEecc--------CCC
Confidence            99999999999764310       0 1112233 477789999999965  899999999999997643        122


Q ss_pred             eeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       310 ~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      .+....+|...|.++.|+..  .+++|||.|++|+|++-.
T Consensus       381 plydI~~h~DKvl~vdW~~~--~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  381 PLYDIAGHNDKVLSVDWNEG--GLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             cceeeccCCceEEEEeccCC--ceEEeccCcceEEEeccc
Confidence            34566899999999999853  368999999999998754

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-32  Score=214.29  Aligned_cols=254  Identities=22%  Similarity=0.455  Sum_probs=200.2

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC-CCCEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP-SGKLL   89 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l   89 (352)
                      +.+...+. -.+.++.++|++..     ..++++|+.||++||||...+..   +...+ +.|...|.++.|++ +.+.+
T Consensus        51 i~e~~s~d-~~D~LfdV~Wse~~-----e~~~~~a~GDGSLrl~d~~~~s~---Pi~~~-kEH~~EV~Svdwn~~~r~~~  120 (311)
T KOG0277|consen   51 IQECQSYD-TEDGLFDVAWSENH-----ENQVIAASGDGSLRLFDLTMPSK---PIHKF-KEHKREVYSVDWNTVRRRIF  120 (311)
T ss_pred             eEEEEeee-cccceeEeeecCCC-----cceEEEEecCceEEEeccCCCCc---chhHH-HhhhhheEEeccccccceeE
Confidence            34444443 46789999999974     46899999999999999654432   22222 45999999999998 45678


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeE
Q 018675           90 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM  168 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~  168 (352)
                      +++++|++|++|+....  ..+.++.+|+.-|....|+| .+++|+++|.|+++++||++.....  + .+..|..++.+
T Consensus       121 ltsSWD~TiKLW~~~r~--~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~--~-~i~ah~~Eil~  195 (311)
T KOG0277|consen  121 LTSSWDGTIKLWDPNRP--NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF--M-SIEAHNSEILC  195 (311)
T ss_pred             EeeccCCceEeecCCCC--cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce--e-EEEeccceeEe
Confidence            89999999999987654  45778999999999999999 6789999999999999999765432  2 26778899999


Q ss_pred             EEEcC-CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEcCCcc
Q 018675          169 VQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       169 ~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      +.|+. +..++++|+.|+.|++||++.-.        +.....++|+-.|..+.|||. ...||+++-|-++||||....
T Consensus       196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  196 CDWSKYNHNVLATGGVDNLVRGWDIRNLR--------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             ecccccCCcEEEecCCCceEEEEehhhcc--------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence            99985 66789999999999999987542        122344699999999999996 567889999999999975311


Q ss_pred             ccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEe
Q 018675          247 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW  326 (352)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  326 (352)
                      .                                                             ..+++..-|+.-+..+.|
T Consensus       268 d-------------------------------------------------------------s~~e~~~~HtEFv~g~Dw  286 (311)
T KOG0277|consen  268 D-------------------------------------------------------------SAIETVDHHTEFVCGLDW  286 (311)
T ss_pred             h-------------------------------------------------------------hhhhhhhccceEEecccc
Confidence            0                                                             011223457888999999


Q ss_pred             cCCCcceEEEecCCCeEEEEee
Q 018675          327 SPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       327 sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      |+-....+|++|.|+.+.||+.
T Consensus       287 s~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  287 SLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccccCceeeecccccceeeecc
Confidence            9876667999999999999985

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.8e-32  Score=242.91  Aligned_cols=299  Identities=22%  Similarity=0.390  Sum_probs=235.6

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF   94 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   94 (352)
                      ..++.-+.+|-+++|||.+      |.++++--.|.|++||...+.-+    ..+ ..|.++|+.+.|+|++.++++|+.
T Consensus         3 tkfEskSsRvKglsFHP~r------PwILtslHsG~IQlWDYRM~tli----~rF-deHdGpVRgv~FH~~qplFVSGGD   71 (1202)
T KOG0292|consen    3 TKFESKSSRVKGLSFHPKR------PWILTSLHSGVIQLWDYRMGTLI----DRF-DEHDGPVRGVDFHPTQPLFVSGGD   71 (1202)
T ss_pred             chhhcccccccceecCCCC------CEEEEeecCceeeeehhhhhhHH----hhh-hccCCccceeeecCCCCeEEecCC
Confidence            4456677889999999984      78999999999999998765321    112 359999999999999999999999


Q ss_pred             CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC
Q 018675           95 DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT  174 (352)
Q Consensus        95 d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (352)
                      |-+|++|+..+.  .++.++.||-.-|+.+.|++.-.+++++|+|.||++|+-++.   .++..+.||..-|+|.+|+|+
T Consensus        72 DykIkVWnYk~r--rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr---~~iavltGHnHYVMcAqFhpt  146 (1202)
T KOG0292|consen   72 DYKIKVWNYKTR--RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR---KCIAVLTGHNHYVMCAQFHPT  146 (1202)
T ss_pred             ccEEEEEecccc--eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC---ceEEEEecCceEEEeeccCCc
Confidence            999999998654  678899999999999999999999999999999999998654   578889999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCceeE--------------------eeeeccCCCCcccEEEEEEcCCCCEEEEEeC
Q 018675          175 MDVLFSCSYDNTIKVWWAEDTDSDNWHCV--------------------QTISESNNGHSSTIWALSFNAKGDKLVSCSD  234 (352)
Q Consensus       175 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~--------------------~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~  234 (352)
                      +..++++|-|.+|++||+..-...+....                    .-......||.-.|+-++|+|.-.+++||++
T Consensus       147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D  226 (1202)
T KOG0292|consen  147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD  226 (1202)
T ss_pred             cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence            99999999999999999865322211100                    0011234589999999999999999999999


Q ss_pred             CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCC-ceEEecCCCCeEEEEEccCCccccCcccceeeec
Q 018675          235 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK  313 (352)
Q Consensus       235 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~  313 (352)
                      |..||+|-++..        +.|.--.+  -.|.+.+.++-|.|. ..+++.+.|+++++|+..+.         ..++.
T Consensus       227 DRqVKlWrmnet--------KaWEvDtc--rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---------t~v~t  287 (1202)
T KOG0292|consen  227 DRQVKLWRMNET--------KAWEVDTC--RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---------TSVQT  287 (1202)
T ss_pred             cceeeEEEeccc--------cceeehhh--hcccCCcceEEecCccceeEecCCCccEEEEecccc---------cceee
Confidence            999999965421        22321111  136778888888884 58999999999999976542         12233


Q ss_pred             ccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       314 ~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ...-+++-..++-+|.. +++ .+|.|+-+.||.+++
T Consensus       288 frrendRFW~laahP~l-NLf-AAgHDsGm~VFkleR  322 (1202)
T KOG0292|consen  288 FRRENDRFWILAAHPEL-NLF-AAGHDSGMIVFKLER  322 (1202)
T ss_pred             eeccCCeEEEEEecCCc-cee-eeecCCceEEEEEcc
Confidence            33344678888889976 466 477888888988864

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.8e-31  Score=220.35  Aligned_cols=259  Identities=29%  Similarity=0.501  Sum_probs=202.6

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      +.+.++.||.+.|.+++|.-.+..   ...|+++|.|+++++|.++.+....++.. ....|.++|-+++..++|.++++
T Consensus       135 k~~~~~~Ght~~ik~v~~v~~n~~---~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~-~~~GHk~~V~sVsv~~sgtr~~S  210 (423)
T KOG0313|consen  135 KSIKTIVGHTGPIKSVAWVIKNSS---SCLFVSASMDQTLRLWKWNVGENKVKALK-VCRGHKRSVDSVSVDSSGTRFCS  210 (423)
T ss_pred             ceEEEEecCCcceeeeEEEecCCc---cceEEEecCCceEEEEEecCchhhhhHHh-HhcccccceeEEEecCCCCeEEe
Confidence            566788999999998888653211   24799999999999999876543222211 22379999999999999999999


Q ss_pred             EeCCCcEEEEEccC-----------------------CceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecC
Q 018675           92 ASFDATTCIWEDVG-----------------------GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM  148 (352)
Q Consensus        92 ~~~d~~i~i~~~~~-----------------------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~  148 (352)
                      |++|.++.+|+..+                       +...++.++.+|.++|.++.|++ ...++++|+|.+|+.||+.
T Consensus       211 gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle  289 (423)
T KOG0313|consen  211 GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE  289 (423)
T ss_pred             ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence            99999999998221                       11234667899999999999988 6789999999999999997


Q ss_pred             CCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE
Q 018675          149 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK  228 (352)
Q Consensus       149 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~  228 (352)
                      .++.   +..+.+ ...+.++..+|...+|++|+.|+.+++||.+..+. +.     ......+|.+.|.++.|+|...+
T Consensus       290 tg~~---~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g-s~-----v~~s~~gH~nwVssvkwsp~~~~  359 (423)
T KOG0313|consen  290 TGGL---KSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG-SV-----VSQSLIGHKNWVSSVKWSPTNEF  359 (423)
T ss_pred             cccc---eeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCC-ce-----eEEeeecchhhhhheecCCCCce
Confidence            7653   223332 34688999999999999999999999998766432 11     12234589999999999997654


Q ss_pred             -EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEc
Q 018675          229 -LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVE  296 (352)
Q Consensus       229 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~  296 (352)
                       |++++.|+++++||++..+          .++..+. .|...++++.|.....+++|+.|++++++..
T Consensus       360 ~~~S~S~D~t~klWDvRS~k----------~plydI~-~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  360 QLVSGSYDNTVKLWDVRSTK----------APLYDIA-GHNDKVLSVDWNEGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             EEEEEecCCeEEEEEeccCC----------Ccceeec-cCCceEEEEeccCCceEEeccCcceEEEecc
Confidence             7799999999999987432          2344443 3677899999999999999999999999843

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.8e-31  Score=218.79  Aligned_cols=243  Identities=26%  Similarity=0.433  Sum_probs=201.3

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCC
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG  150 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~  150 (352)
                      ..|.+-|+|+++.|..+.+++|+.|++++|||..++.  +..++.||-+.|+.+++++-..++++++.|+.|+.||+...
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~--LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n  225 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ--LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN  225 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe--EEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence            4699999999999999999999999999999999884  56788999999999999999999999999999999998643


Q ss_pred             CeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE
Q 018675          151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV  230 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  230 (352)
                         +.++.+.+|-..|.|++.+|+.+.|++|+.|..+++||++...+     +..    ..||..+|.++.+.|....++
T Consensus       226 ---kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~-----V~~----l~GH~~~V~~V~~~~~dpqvi  293 (460)
T KOG0285|consen  226 ---KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS-----VHV----LSGHTNPVASVMCQPTDPQVI  293 (460)
T ss_pred             ---hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce-----EEE----ecCCCCcceeEEeecCCCceE
Confidence               35677889999999999999999999999999999998876432     222    348999999999999989999


Q ss_pred             EEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCce-EEecCCCCeEEEEEccCCccccCcccce
Q 018675          231 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKM  309 (352)
Q Consensus       231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~s~~~d~~v~~~~~~~~~~~~~~~~~~  309 (352)
                      +|+.|++|++||+...+           ..+.+ ..|..++.+++..|... +++++.| .++-|...++         +
T Consensus       294 t~S~D~tvrlWDl~agk-----------t~~tl-t~hkksvral~lhP~e~~fASas~d-nik~w~~p~g---------~  351 (460)
T KOG0285|consen  294 TGSHDSTVRLWDLRAGK-----------TMITL-THHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG---------E  351 (460)
T ss_pred             EecCCceEEEeeeccCc-----------eeEee-ecccceeeEEecCCchhhhhccCCc-cceeccCCcc---------c
Confidence            99999999999986332           22222 24677888999998764 5555555 5666644332         2


Q ss_pred             eeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       310 ~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      .++.+.+|+..|++++.+.|+  ++++|++.|.|..||.+.+
T Consensus       352 f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg  391 (460)
T KOG0285|consen  352 FLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSG  391 (460)
T ss_pred             hhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcC
Confidence            334467999999999998886  5779999999999998764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.7e-30  Score=206.69  Aligned_cols=242  Identities=23%  Similarity=0.405  Sum_probs=197.8

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCc--eeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcE
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS--RFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATT   98 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   98 (352)
                      +..|...+|+|+      ++++|.||-|+...||++.+..  ........+ ..|++.+.||.|-+| ..|+|++.|.+.
T Consensus        97 s~WVMtCA~sPS------g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l-~gHtgylScC~f~dD-~~ilT~SGD~TC  168 (343)
T KOG0286|consen   97 SSWVMTCAYSPS------GNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL-AGHTGYLSCCRFLDD-NHILTGSGDMTC  168 (343)
T ss_pred             ceeEEEEEECCC------CCeEEecCcCceeEEEecccccccccceeeeee-cCccceeEEEEEcCC-CceEecCCCceE
Confidence            457778899997      5799999999999999987552  111112222 469999999999985 567899999999


Q ss_pred             EEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCE
Q 018675           99 CIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV  177 (352)
Q Consensus        99 ~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  177 (352)
                      .+||.+++.  ....+.+|.+.|.+++++| +++.|++|+-|++.++||++.+   .++..+.+|...|+++.|+|++.-
T Consensus       169 alWDie~g~--~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---~c~qtF~ghesDINsv~ffP~G~a  243 (343)
T KOG0286|consen  169 ALWDIETGQ--QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---QCVQTFEGHESDINSVRFFPSGDA  243 (343)
T ss_pred             EEEEcccce--EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc---ceeEeecccccccceEEEccCCCe
Confidence            999998874  4677889999999999999 9999999999999999999866   467889999999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccc
Q 018675          178 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW  257 (352)
Q Consensus       178 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  257 (352)
                      +++|+.|++.++||++...+     +..++  ...-..+|++++|+..|++|.+|..|.++.+||.-..+          
T Consensus       244 fatGSDD~tcRlyDlRaD~~-----~a~ys--~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e----------  306 (343)
T KOG0286|consen  244 FATGSDDATCRLYDLRADQE-----LAVYS--HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE----------  306 (343)
T ss_pred             eeecCCCceeEEEeecCCcE-----Eeeec--cCcccCCceeEEEcccccEEEeeecCCceeEeeccccc----------
Confidence            99999999999999876421     11221  11234679999999999999999999999999853211          


Q ss_pred             eeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEE
Q 018675          258 RHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFF  294 (352)
Q Consensus       258 ~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~  294 (352)
                       ....+ ..|++.|.++..+|+| .+++|+-|.++++|
T Consensus       307 -~vg~L-~GHeNRvScl~~s~DG~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  307 -RVGVL-AGHENRVSCLGVSPDGMAVATGSWDSTLRIW  342 (343)
T ss_pred             -eEEEe-eccCCeeEEEEECCCCcEEEecchhHheeec
Confidence             12223 3589999999999998 58899999999998

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-30  Score=236.07  Aligned_cols=214  Identities=25%  Similarity=0.542  Sum_probs=181.7

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..+..|.+|.++|.+++|||.      .++|+|||+|-.|++|+....+.+.+.     ..|-..|+.+.|++.-..|++
T Consensus        42 tli~rFdeHdGpVRgv~FH~~------qplFVSGGDDykIkVWnYk~rrclftL-----~GHlDYVRt~~FHheyPWIlS  110 (1202)
T KOG0292|consen   42 TLIDRFDEHDGPVRGVDFHPT------QPLFVSGGDDYKIKVWNYKTRRCLFTL-----LGHLDYVRTVFFHHEYPWILS  110 (1202)
T ss_pred             hHHhhhhccCCccceeeecCC------CCeEEecCCccEEEEEecccceehhhh-----ccccceeEEeeccCCCceEEE
Confidence            345567899999999999998      489999999999999999876543332     358899999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecC--------CCC------------
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM--------PGN------------  151 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~--------~~~------------  151 (352)
                      +|.|.+|+||+..+.  .++..+.||+.-|+|..|+|...+++++|-|.+|+|||+.        ++.            
T Consensus       111 ASDDQTIrIWNwqsr--~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~  188 (1202)
T KOG0292|consen  111 ASDDQTIRIWNWQSR--KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNS  188 (1202)
T ss_pred             ccCCCeEEEEeccCC--ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccch
Confidence            999999999999876  5788999999999999999999999999999999999973        110            


Q ss_pred             ------eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC
Q 018675          152 ------EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK  225 (352)
Q Consensus       152 ------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~  225 (352)
                            .......+.||...|+.++|+|+-..+++|+.|+.|++|.+..+.  -|.    . ....||.+.|.++-|+|.
T Consensus       189 dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK--aWE----v-DtcrgH~nnVssvlfhp~  261 (1202)
T KOG0292|consen  189 DLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK--AWE----V-DTCRGHYNNVSSVLFHPH  261 (1202)
T ss_pred             hhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc--cee----e-hhhhcccCCcceEEecCc
Confidence                  011235678999999999999999999999999999999765432  121    1 244589999999999999


Q ss_pred             CCEEEEEeCCCcEEEEcCCc
Q 018675          226 GDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       226 ~~~l~s~~~dg~i~iwd~~~  245 (352)
                      .++++|.|.|+.|++||+..
T Consensus       262 q~lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  262 QDLILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             cceeEecCCCccEEEEeccc
Confidence            99999999999999999863

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.3e-30  Score=229.41  Aligned_cols=289  Identities=22%  Similarity=0.370  Sum_probs=226.0

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF   94 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   94 (352)
                      .++.||...|.+++++.+.      ..++|| ..+++++|+..+.+.+    ..+   ....+.++.|-|.++++++|..
T Consensus       367 i~~~GHR~dVRsl~vS~d~------~~~~Sg-a~~SikiWn~~t~kci----RTi---~~~y~l~~~Fvpgd~~Iv~G~k  432 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDS------ILLASG-AGESIKIWNRDTLKCI----RTI---TCGYILASKFVPGDRYIVLGTK  432 (888)
T ss_pred             eeeccchhheeEEEeecCc------eeeeec-CCCcEEEEEccCccee----EEe---ccccEEEEEecCCCceEEEecc
Confidence            3567999999999999863      455664 5679999999876432    222   3357899999999999999999


Q ss_pred             CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecC-----CCCeeEEEEE----eecCccC
Q 018675           95 DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM-----PGNEFECVSV----LQGHAQD  165 (352)
Q Consensus        95 d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~-----~~~~~~~~~~----~~~h~~~  165 (352)
                      .|.+.+||.....  .+.+.++|+++++.++.+|++..+++||.|.+|++||..     ++...+.+..    .-.-...
T Consensus       433 ~Gel~vfdlaS~~--l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~dd  510 (888)
T KOG0306|consen  433 NGELQVFDLASAS--LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDD  510 (888)
T ss_pred             CCceEEEEeehhh--hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecccc
Confidence            9999999987653  345667999999999999999999999999999999963     1111111111    0112457


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          166 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       166 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      |.|+.+||++.+|+++=-|+++++|.+..-     +    +.-...||.-||.|++.+||+.+++|||.|.+||+|.++.
T Consensus       511 vL~v~~Spdgk~LaVsLLdnTVkVyflDtl-----K----FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF  581 (888)
T KOG0306|consen  511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-----K----FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF  581 (888)
T ss_pred             EEEEEEcCCCcEEEEEeccCeEEEEEecce-----e----eeeeecccccceeEEeccCCcCeEEeccCCCceEEecccc
Confidence            889999999999999999999999965431     1    2224569999999999999999999999999999998764


Q ss_pred             cccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEE
Q 018675          246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV  324 (352)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  324 (352)
                      ...     +++       .-.|+.++.++.|-|.. .+.+++-|+.++.|+..+        . ..++++.+|...|.++
T Consensus       582 GDC-----HKS-------~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k--------F-e~iq~L~~H~~ev~cL  640 (888)
T KOG0306|consen  582 GDC-----HKS-------FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK--------F-EEIQKLDGHHSEVWCL  640 (888)
T ss_pred             chh-----hhh-------hhcccCceeEEEEcccceeEEEecCcceEEeechhh--------h-hhheeeccchheeeee
Confidence            322     110       11367788889888865 688999999999996543        1 2356678999999999


Q ss_pred             EecCCCcceEEEecCCCeEEEEeecc
Q 018675          325 QWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       325 ~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +.+|+|. +++|+|.|..||+|+-..
T Consensus       641 av~~~G~-~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  641 AVSPNGS-FVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             EEcCCCC-eEEeccCCceeEeeeccC
Confidence            9999997 678999999999998653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.4e-30  Score=225.11  Aligned_cols=283  Identities=25%  Similarity=0.394  Sum_probs=223.4

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      ++..|+++|-|+++||..      |.++++-..|.|.|||.++.......     ....-+|+++.|-+-.+.+++|+.|
T Consensus         8 k~~~rSdRVKsVd~HPte------Pw~la~LynG~V~IWnyetqtmVksf-----eV~~~PvRa~kfiaRknWiv~GsDD   76 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTE------PWILAALYNGDVQIWNYETQTMVKSF-----EVSEVPVRAAKFIARKNWIVTGSDD   76 (794)
T ss_pred             HhhccCCceeeeecCCCC------ceEEEeeecCeeEEEecccceeeeee-----eecccchhhheeeeccceEEEecCC
Confidence            455699999999999984      68888899999999999876543221     2245789999999999999999999


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC-
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-  174 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~-  174 (352)
                      ..|++|+..+.  +.+..+.+|..-|++++.+|...+++|+|+|-+|++||-.  +.+.+..++.+|..-|++++|.|. 
T Consensus        77 ~~IrVfnynt~--ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we--~~wa~~qtfeGH~HyVMqv~fnPkD  152 (794)
T KOG0276|consen   77 MQIRVFNYNTG--EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE--NEWACEQTFEGHEHYVMQVAFNPKD  152 (794)
T ss_pred             ceEEEEecccc--eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc--CceeeeeEEcCcceEEEEEEecCCC
Confidence            99999998766  4578889999999999999999999999999999999975  456778889999999999999995 


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcC--CCCEEEEEeCCCcEEEEcCCccccccCC
Q 018675          175 MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA--KGDKLVSCSDDLTIKIWGADITRMQSGD  252 (352)
Q Consensus       175 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~  252 (352)
                      .+.+++++-|++|++|.+.....     ..++    .||+..|++++|-+  |..||+||++|.++||||........  
T Consensus       153 ~ntFaS~sLDrTVKVWslgs~~~-----nfTl----~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~--  221 (794)
T KOG0276|consen  153 PNTFASASLDRTVKVWSLGSPHP-----NFTL----EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ--  221 (794)
T ss_pred             ccceeeeeccccEEEEEcCCCCC-----ceee----eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH--
Confidence            45799999999999998776532     2233    38999999999976  45799999999999999976432211  


Q ss_pred             CCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCc
Q 018675          253 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER  331 (352)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  331 (352)
                               ++ ..|.+.+..+.+.|.- ++++|+.||++++|......+.         ..+.-.-.+|.+++-.+.+.
T Consensus       222 ---------TL-eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE---------~tLn~gleRvW~I~~~k~~~  282 (794)
T KOG0276|consen  222 ---------TL-EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE---------KTLNYGLERVWCIAAHKGDG  282 (794)
T ss_pred             ---------Hh-hcccccceEEEecCCCcEEEEecCCccEEEecCcceehh---------hhhhcCCceEEEEeecCCCC
Confidence                     11 2366678888888874 8999999999999965432111         12223345788888877665


Q ss_pred             ceEEEecCCCeEE
Q 018675          332 RLLASASDDGMIK  344 (352)
Q Consensus       332 ~~l~s~~~Dg~i~  344 (352)
                      + ++.|.+.|.|.
T Consensus       283 ~-i~vG~Deg~i~  294 (794)
T KOG0276|consen  283 K-IAVGFDEGSVT  294 (794)
T ss_pred             e-EEEeccCCcEE
Confidence            4 56676666553

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.2e-30  Score=211.12  Aligned_cols=306  Identities=30%  Similarity=0.507  Sum_probs=239.0

Q ss_pred             ccCCccceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEEC
Q 018675            4 LDDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWS   83 (352)
Q Consensus         4 ~~~~~~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s   83 (352)
                      .+++...+..+..|.||++.|+.++....+      +.+.|+|.|.+.+||.++++..+.+     ...|.+.|+++.|+
T Consensus       131 Fk~~t~~~~lvre~~GHkDGiW~Vaa~~tq------pi~gtASADhTA~iWs~Esg~CL~~-----Y~GH~GSVNsikfh  199 (481)
T KOG0300|consen  131 FKDGTVKFRLVRELEGHKDGIWHVAADSTQ------PICGTASADHTARIWSLESGACLAT-----YTGHTGSVNSIKFH  199 (481)
T ss_pred             ecCCceeEeehhhhcccccceeeehhhcCC------cceeecccccceeEEeeccccceee-----ecccccceeeEEec
Confidence            356666778888999999999999876653      6899999999999999998864332     25699999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEc------cC--------Cc------------------------eeeeEeeccccCCeeEEE
Q 018675           84 PSGKLLATASFDATTCIWED------VG--------GD------------------------YECVATLEGHENEVKSVS  125 (352)
Q Consensus        84 ~~~~~l~s~~~d~~i~i~~~------~~--------~~------------------------~~~~~~~~~h~~~v~~v~  125 (352)
                      +.+.++++++.|++..||..      ..        ++                        ..++..+.+|.+.|.+..
T Consensus       200 ~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d  279 (481)
T KOG0300|consen  200 NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD  279 (481)
T ss_pred             cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh
Confidence            99999999999999999961      10        00                        013456788999999999


Q ss_pred             ECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEee
Q 018675          126 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT  205 (352)
Q Consensus       126 ~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~  205 (352)
                      |-..|++++++++|++..+||+..+.   .+..+.+|....+.+.-+|+.+++++.+.|.+.++||++..       ++.
T Consensus       280 WL~gg~Q~vTaSWDRTAnlwDVEtge---~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-------I~s  349 (481)
T KOG0300|consen  280 WLAGGQQMVTASWDRTANLWDVETGE---VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-------IQS  349 (481)
T ss_pred             hhcCcceeeeeeccccceeeeeccCc---eeccccCcchhccccccCCcceEEEEeccCceeEeccchhh-------cce
Confidence            99999999999999999999997664   56788999999999999999999999999999999988643       222


Q ss_pred             eeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEe
Q 018675          206 ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIAS  284 (352)
Q Consensus       206 ~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s  284 (352)
                      . ....||+..|+++.|..+ ..+++|++|.+||+||++.  |.        .++.++  ..+.++..+..+.++ +++.
T Consensus       350 V-~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrN--MR--------splATI--RtdS~~NRvavs~g~~iIAi  415 (481)
T KOG0300|consen  350 V-AVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRN--MR--------SPLATI--RTDSPANRVAVSKGHPIIAI  415 (481)
T ss_pred             e-eeecccccceeEEEEecC-CceeecCCCceEEEeeecc--cc--------Ccceee--ecCCccceeEeecCCceEEe
Confidence            2 234589999999999766 4589999999999999852  21        122222  134456667777776 6777


Q ss_pred             cCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCC--cceEEEecCCCeEEEEeecc
Q 018675          285 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       285 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      -..+..+++|+.++.-+.     +......++|..-|++++|+.+.  -. |.|+|-|..+.=|++..
T Consensus       416 PhDNRqvRlfDlnG~Rla-----RlPrtsRqgHrRMV~c~AW~eehp~cn-LftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  416 PHDNRQVRLFDLNGNRLA-----RLPRTSRQGHRRMVTCCAWLEEHPACN-LFTCGFDRMVAGWKINT  477 (481)
T ss_pred             ccCCceEEEEecCCCccc-----cCCcccccccceeeeeeeccccCcccc-cccccccceeeeeEecc
Confidence            777889999987664432     23333457999999999997432  23 45999999999999864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.98  E-value=4.6e-30  Score=237.44  Aligned_cols=297  Identities=27%  Similarity=0.451  Sum_probs=220.7

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEee--CCCeEEEEecCCCc---eeee----eeeeeecceecceEEEEECCCCCEE
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCS--GDKTVRIWEQSASS---RFWN----CKAVLEEMHTRTVRSCAWSPSGKLL   89 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s--~D~~v~~w~~~~~~---~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l   89 (352)
                      .+...|++|+.+|+      +..+|||+  .|+.+++|+.+.-.   ....    ........|.+.|+|+.|+|||++|
T Consensus        11 H~~~~IfSIdv~pd------g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~l   84 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPD------GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYL   84 (942)
T ss_pred             cCCeeEEEEEecCC------ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeE
Confidence            34557899999997      68999999  99999999865321   0000    0111224589999999999999999


Q ss_pred             EEEeCCCcEEEEEccC----------------CceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCee
Q 018675           90 ATASFDATTCIWEDVG----------------GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF  153 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~----------------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  153 (352)
                      |+|+.|+.+.+|+...                ..+.+...+.+|.+.|..++|+|++.+|++++-|++|.+|+....   
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF---  161 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF---  161 (942)
T ss_pred             eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc---
Confidence            9999999999998652                013456778899999999999999999999999999999997543   


Q ss_pred             EEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeec--cCCCCcccEEEEEEcCCCCEEEE
Q 018675          154 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE--SNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                      +.+..+.+|...|..+.|.|-|+++++-+.|++|++|...+     |.+.+.+.+  ...........+.|+|||.+|++
T Consensus       162 ~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-----w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las  236 (942)
T KOG0973|consen  162 ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-----WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLAS  236 (942)
T ss_pred             eeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc-----ceeeEeeccchhhCCCcceeeecccCCCcCeecc
Confidence            67788999999999999999999999999999999996433     444444432  12234567888999999999998


Q ss_pred             EeC----CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC------Cc------------eEEecCCCC
Q 018675          232 CSD----DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR------EG------------IIASGAADD  289 (352)
Q Consensus       232 ~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~------------~~~s~~~d~  289 (352)
                      .-.    -..+.|.+-           ..|+--..+.+ |..++..+.|.|      ..            ++|+|+.|+
T Consensus       237 ~nA~n~~~~~~~IieR-----------~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr  304 (942)
T KOG0973|consen  237 PNAVNGGKSTIAIIER-----------GTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR  304 (942)
T ss_pred             hhhccCCcceeEEEec-----------CCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence            632    225565532           23443344433 555667666665      11            688999999


Q ss_pred             eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       290 ~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ++-+|....        .+.++.-..-.+..|.+++|+|||..+| .+|.||+|.+..++.
T Consensus       305 SlSVW~T~~--------~RPl~vi~~lf~~SI~DmsWspdG~~Lf-acS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  305 SLSVWNTAL--------PRPLFVIHNLFNKSIVDMSWSPDGFSLF-ACSLDGTVALIHFEE  356 (942)
T ss_pred             cEEEEecCC--------CCchhhhhhhhcCceeeeeEcCCCCeEE-EEecCCeEEEEEcch
Confidence            999996421        1111111223356899999999997655 699999999988753

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=7.6e-30  Score=206.48  Aligned_cols=310  Identities=16%  Similarity=0.292  Sum_probs=212.6

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCce--eeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSR--FWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      .+.+|+||.+.|++++|+.+      ++.|||++.|++||+|++.....  .......++..   ..+.+.|+||-+.++
T Consensus        78 ~~~~LKgH~~~vt~~~FsSd------GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc~s~v  148 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSD------GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDCKSVV  148 (420)
T ss_pred             hhhhhhccCCceeeeEEcCC------CceeEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCcceEE
Confidence            34678999999999999987      68999999999999999865321  10111122222   357789999987554


Q ss_pred             -EEeCCCcEEEEEccC---Cceee----eE---eeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEe
Q 018675           91 -TASFDATTCIWEDVG---GDYEC----VA---TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL  159 (352)
Q Consensus        91 -s~~~d~~i~i~~~~~---~~~~~----~~---~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~  159 (352)
                       +.-...++++|....   +....    +-   --+.|.-.|..+.....+.+|++++.|.+|.+|+++ ++.   +..+
T Consensus       149 v~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~---L~~i  224 (420)
T KOG2096|consen  149 VSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL---LQSI  224 (420)
T ss_pred             EEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce---eeee
Confidence             445566888885421   11111    11   113456667777777788999999999999999987 443   3334


Q ss_pred             ecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEE
Q 018675          160 QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK  239 (352)
Q Consensus       160 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~  239 (352)
                      ...+..-...+.+|+|+++++++....+++|.+-......++..... ..+.||.+.|.+++|+|+.+.+++.+.||++|
T Consensus       225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rv-f~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr  303 (420)
T KOG2096|consen  225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV-FSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR  303 (420)
T ss_pred             ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhh-heeccchhheeeeeeCCCcceeEEEecCCcEE
Confidence            44445556778999999999999999999997644433333322222 24569999999999999999999999999999


Q ss_pred             EEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCc
Q 018675          240 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM  319 (352)
Q Consensus       240 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~  319 (352)
                      +||.+.......++.. .+.-.............+..+|++.+++.+....++++........     .   .....|+.
T Consensus       304 iwdtdVrY~~~qDpk~-Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~-----~---~~e~~h~~  374 (420)
T KOG2096|consen  304 IWDTDVRYEAGQDPKI-LKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDY-----P---ELEDIHST  374 (420)
T ss_pred             EeeccceEecCCCchH-hhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccc-----h---hHHHhhcC
Confidence            9998764322211110 0100000011233445788999998888888888888865432211     1   12357999


Q ss_pred             ceeEEEecCCCcceEEEecCCCeEEEEe
Q 018675          320 DVNSVQWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       320 ~i~~~~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      .|.+|+|+|+|+ +++|+| |..+++.-
T Consensus       375 ~Is~is~~~~g~-~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  375 TISSISYSSDGK-YIATCG-DRYVRVIR  400 (420)
T ss_pred             ceeeEEecCCCc-EEeeec-ceeeeeec
Confidence            999999999997 578888 77777753

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=6.6e-30  Score=223.32  Aligned_cols=212  Identities=26%  Similarity=0.408  Sum_probs=177.6

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      ++.+++-...+|.+..|-+.      .+.+++||+|..||+|+..+..++..     .++|...|++++.+|...+++++
T Consensus        47 mVksfeV~~~PvRa~kfiaR------knWiv~GsDD~~IrVfnynt~ekV~~-----FeAH~DyIR~iavHPt~P~vLts  115 (794)
T KOG0276|consen   47 MVKSFEVSEVPVRAAKFIAR------KNWIVTGSDDMQIRVFNYNTGEKVKT-----FEAHSDYIRSIAVHPTLPYVLTS  115 (794)
T ss_pred             eeeeeeecccchhhheeeec------cceEEEecCCceEEEEecccceeeEE-----eeccccceeeeeecCCCCeEEec
Confidence            34445555566666666665      36899999999999999988764322     25699999999999999999999


Q ss_pred             eCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      +.|-+|++|+.+. .+.+.++++||..-|++++|+| |.+.|++++-|+||+||.+-+.   .+..++.+|...|+|+.+
T Consensus       116 SDDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~---~~nfTl~gHekGVN~Vdy  191 (794)
T KOG0276|consen  116 SDDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP---HPNFTLEGHEKGVNCVDY  191 (794)
T ss_pred             CCccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC---CCceeeeccccCcceEEe
Confidence            9999999999864 5778899999999999999999 6678999999999999998433   345678899999999999


Q ss_pred             cCC--CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccc
Q 018675          172 HPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM  248 (352)
Q Consensus       172 ~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~  248 (352)
                      -+.  .++|++|+.|..+++||...     ..|+++++    ||...|..+.|+|.-..++||+.||++|||.....++
T Consensus       192 y~~gdkpylIsgaDD~tiKvWDyQt-----k~CV~TLe----GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  192 YTGGDKPYLISGADDLTIKVWDYQT-----KSCVQTLE----GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             ccCCCcceEEecCCCceEEEeecch-----HHHHHHhh----cccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence            874  46999999999999997543     35676664    8999999999999999999999999999997654444

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=6.7e-31  Score=205.87  Aligned_cols=288  Identities=24%  Similarity=0.368  Sum_probs=221.9

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      +-.||+.+|-.++|+|..   +.+-+|++++.|+.-.+-+-+++.=+    ..+ ..|.+.|.++.++.+....|+++.|
T Consensus         9 ~c~ghtrpvvdl~~s~it---p~g~flisa~kd~~pmlr~g~tgdwi----gtf-eghkgavw~~~l~~na~~aasaaad   80 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPIT---PDGYFLISASKDGKPMLRNGDTGDWI----GTF-EGHKGAVWSATLNKNATRAASAAAD   80 (334)
T ss_pred             EEcCCCcceeEEeccCCC---CCceEEEEeccCCCchhccCCCCCcE----Eee-eccCcceeeeecCchhhhhhhhccc
Confidence            345999999999999853   45789999999999888766655321    122 4599999999999999999999999


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCC
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM  175 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  175 (352)
                      -+.++||..+++.  +..+ .|..-|.+++|+.+.+.|++|+.+..++++|++...  .+...+.+|+..|+.+-|...+
T Consensus        81 ftakvw~a~tgde--lhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~--App~E~~ghtg~Ir~v~wc~eD  155 (334)
T KOG0278|consen   81 FTAKVWDAVTGDE--LHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK--APPKEISGHTGGIRTVLWCHED  155 (334)
T ss_pred             chhhhhhhhhhhh--hhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCC--CCchhhcCCCCcceeEEEeccC
Confidence            9999999888753  3444 478899999999999999999999999999986543  2345678999999999999888


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCc
Q 018675          176 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA  255 (352)
Q Consensus       176 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  255 (352)
                      +.+++.+.|+.|++||.+..     ...+++.     ...+|.++.++++|++|. -...+.|++||.+.....     +
T Consensus       156 ~~iLSSadd~tVRLWD~rTg-----t~v~sL~-----~~s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~l-----K  219 (334)
T KOG0278|consen  156 KCILSSADDKTVRLWDHRTG-----TEVQSLE-----FNSPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGLL-----K  219 (334)
T ss_pred             ceEEeeccCCceEEEEeccC-----cEEEEEe-----cCCCCcceeeccCCCEEE-EecCceeEEeccccccce-----e
Confidence            89999999999999987653     2344553     346799999999998654 445678999997532210     1


Q ss_pred             cceeeEEeecccCcceEEEEecCC-ceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceE
Q 018675          256 SWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLL  334 (352)
Q Consensus       256 ~~~~~~~~~~~~~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l  334 (352)
                      ...        ..-.|.+.+..|+ +.+++|+.|..++.|++..+..        +-.-..+|-++|.++.|+|+|. ++
T Consensus       220 s~k--------~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE--------i~~~nkgh~gpVhcVrFSPdGE-~y  282 (334)
T KOG0278|consen  220 SYK--------MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE--------IGSYNKGHFGPVHCVRFSPDGE-LY  282 (334)
T ss_pred             ecc--------CccccccccccCCCceEEecCcceEEEEEeccCCce--------eeecccCCCCceEEEEECCCCc-ee
Confidence            111        1122444455564 5899999999999987654321        1111478999999999999997 78


Q ss_pred             EEecCCCeEEEEeec
Q 018675          335 ASASDDGMIKIWELA  349 (352)
Q Consensus       335 ~s~~~Dg~i~iw~~~  349 (352)
                      ++||+||+||||.+.
T Consensus       283 AsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  283 ASGSEDGTIRLWQTT  297 (334)
T ss_pred             eccCCCceEEEEEec
Confidence            999999999999874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.4e-29  Score=223.02  Aligned_cols=313  Identities=24%  Similarity=0.422  Sum_probs=232.0

Q ss_pred             cccCCccce------eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecc
Q 018675            3 FLDDGNYEL------REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRT   76 (352)
Q Consensus         3 ~~~~~~~~~------~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~   76 (352)
                      +|-||++++      ....++.||+.+|+++.|...      |..|||||.|+.|.+||+-.....++.     ..|+..
T Consensus        83 GYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~------G~rlaSGskDt~IIvwDlV~E~Gl~rL-----~GHkd~  151 (888)
T KOG0306|consen   83 GYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKI------GTRLASGSKDTDIIVWDLVGEEGLFRL-----RGHKDS  151 (888)
T ss_pred             EecCceEEeeccCCCceeeeecccccceEEEEEccc------CceEeecCCCccEEEEEeccceeeEEe-----ecchHH
Confidence            355666664      455689999999999999876      679999999999999998654433322     458899


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCC-------
Q 018675           77 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-------  149 (352)
Q Consensus        77 v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~-------  149 (352)
                      |+..-|..+.+++++.+.|+.|++||..+.  .|..+.-.|.+.++++++.+  +.+++++.|..+++|++..       
T Consensus       152 iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq--hCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~  227 (888)
T KOG0306|consen  152 ITQALFLNGDSFLVSVSKDSMIKFWDLETQ--HCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKET  227 (888)
T ss_pred             HhHHhccCCCeEEEEeccCceEEEEecccc--eeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccc
Confidence            999889888899999999999999998765  56677778999999999987  7899999999999999810       


Q ss_pred             -----------------CC-------------------------------------------------------------
Q 018675          150 -----------------GN-------------------------------------------------------------  151 (352)
Q Consensus       150 -----------------~~-------------------------------------------------------------  151 (352)
                                       ++                                                             
T Consensus       228 ~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl  307 (888)
T KOG0306|consen  228 NRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSL  307 (888)
T ss_pred             cccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhH
Confidence                             00                                                             


Q ss_pred             -------------------------eeE-----------EE------------------EEeecCccCeeEEEEcCCCCE
Q 018675          152 -------------------------EFE-----------CV------------------SVLQGHAQDVKMVQWHPTMDV  177 (352)
Q Consensus       152 -------------------------~~~-----------~~------------------~~~~~h~~~v~~~~~~~~~~~  177 (352)
                                               ...           +.                  -.+.+|...|+.++++.+...
T Consensus       308 ~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~  387 (888)
T KOG0306|consen  308 SDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSIL  387 (888)
T ss_pred             HHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCcee
Confidence                                     000           00                  113467778888889877665


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCceeEeeee------------------------------------ccCCCCcccEEEEE
Q 018675          178 LFSCSYDNTIKVWWAEDTDSDNWHCVQTIS------------------------------------ESNNGHSSTIWALS  221 (352)
Q Consensus       178 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~------------------------------------~~~~~h~~~i~~l~  221 (352)
                      +++|+ .+.+++|+....     +|+.++.                                    +...+|.+.|++++
T Consensus       388 ~~Sga-~~SikiWn~~t~-----kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~  461 (888)
T KOG0306|consen  388 LASGA-GESIKIWNRDTL-----KCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS  461 (888)
T ss_pred             eeecC-CCcEEEEEccCc-----ceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee
Confidence            55554 677999965421     1221111                                    12247999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEcCCccccccCCCCc----cceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEc
Q 018675          222 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA----SWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE  296 (352)
Q Consensus       222 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~  296 (352)
                      .+||+..+++||.|.+|++||+.+...  ..+..    ...+..++  ..+..+.++..+|++ +++.+--|+++.+|..
T Consensus       462 ~~pD~~g~vT~saDktVkfWdf~l~~~--~~gt~~k~lsl~~~rtL--el~ddvL~v~~Spdgk~LaVsLLdnTVkVyfl  537 (888)
T KOG0306|consen  462 LSPDNKGFVTGSADKTVKFWDFKLVVS--VPGTQKKVLSLKHTRTL--ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFL  537 (888)
T ss_pred             ecCCCCceEEecCCcEEEEEeEEEEec--cCcccceeeeeccceEE--eccccEEEEEEcCCCcEEEEEeccCeEEEEEe
Confidence            999999999999999999999764322  11111    00111111  235678899999987 7788888999999854


Q ss_pred             cCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          297 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ..         -.+...+.||..+|.++..|||+. +++|||.|+.|+||-+..
T Consensus       538 Dt---------lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdF  581 (888)
T KOG0306|consen  538 DT---------LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDF  581 (888)
T ss_pred             cc---------eeeeeeecccccceeEEeccCCcC-eEEeccCCCceEEecccc
Confidence            31         123345789999999999999985 899999999999997754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.2e-29  Score=194.83  Aligned_cols=287  Identities=19%  Similarity=0.322  Sum_probs=217.1

Q ss_pred             ceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE
Q 018675           10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL   89 (352)
Q Consensus        10 ~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l   89 (352)
                      +-+.+..|.+|.++|..+.|+-+      +++.+||+.|++||+|+...+..+    ..+ ..|...|..++.+.|...+
T Consensus         6 ptkr~~~l~~~qgaV~avryN~d------GnY~ltcGsdrtvrLWNp~rg~li----ktY-sghG~EVlD~~~s~Dnskf   74 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYNVD------GNYCLTCGSDRTVRLWNPLRGALI----KTY-SGHGHEVLDAALSSDNSKF   74 (307)
T ss_pred             cchhceeecccccceEEEEEccC------CCEEEEcCCCceEEeeccccccee----eee-cCCCceeeecccccccccc
Confidence            33456778999999999999886      689999999999999998765422    222 4588899999999999999


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEE
Q 018675           90 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV  169 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~  169 (352)
                      ++|+.|..+.+||..+++  ....+.+|.+.|+.+.|+.+...+++|+.|.++++||-+. +..+++..+......|.++
T Consensus        75 ~s~GgDk~v~vwDV~TGk--v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS-~s~ePiQildea~D~V~Si  151 (307)
T KOG0316|consen   75 ASCGGDKAVQVWDVNTGK--VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS-RSFEPIQILDEAKDGVSSI  151 (307)
T ss_pred             ccCCCCceEEEEEcccCe--eeeecccccceeeEEEecCcceEEEeccccceeEEEEccc-CCCCccchhhhhcCceeEE
Confidence            999999999999998884  4667899999999999999999999999999999999764 3445666666666778887


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccc-
Q 018675          170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM-  248 (352)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~-  248 (352)
                      ...  +..+++||.||+++.|+++....         .  .+-.+.+|++++|+++++..+.++-|+++++.|-...++ 
T Consensus       152 ~v~--~heIvaGS~DGtvRtydiR~G~l---------~--sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL  218 (307)
T KOG0316|consen  152 DVA--EHEIVAGSVDGTVRTYDIRKGTL---------S--SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL  218 (307)
T ss_pred             Eec--ccEEEeeccCCcEEEEEeeccee---------e--hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence            775  44689999999999998875421         1  112457899999999999999999999999998654432 


Q ss_pred             ccCCCCccceeeEEeecccCcceEEEE--ec-CCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcc-eeEE
Q 018675          249 QSGDGYASWRHLCTISGYHDRTIFSVH--WS-REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD-VNSV  324 (352)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~-~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~~  324 (352)
                      .+..+             |.+.-+.+.  +. .+..+++|+.||.+++|+.-..         .++.....|... |+++
T Consensus       219 ~sYkG-------------hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---------~~~sk~~~~~~v~v~dl  276 (307)
T KOG0316|consen  219 KSYKG-------------HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---------TQISKLSVVSTVIVTDL  276 (307)
T ss_pred             HHhcc-------------cccceeeeeeeecccceeEEeccCCceEEEEEeccc---------eeeeeeccCCceeEEee
Confidence            22222             222223222  22 2457999999999999965332         223334445554 8999


Q ss_pred             EecCCCcceEEEecCCCeEEEEe
Q 018675          325 QWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       325 ~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      +++|.-..++ ++. ++.+..|.
T Consensus       277 ~~hp~~~~f~-~A~-~~~~~~~~  297 (307)
T KOG0316|consen  277 SCHPTMDDFI-TAT-GHGDLFWY  297 (307)
T ss_pred             ecccCcccee-Eec-CCceecee
Confidence            9999876655 444 45555664

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=4.8e-30  Score=206.99  Aligned_cols=304  Identities=21%  Similarity=0.303  Sum_probs=210.7

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCC------Cceee------e-eeeeeecceecceEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSA------SSRFW------N-CKAVLEEMHTRTVRS   79 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~------~~~~~------~-~~~~~~~~h~~~v~~   79 (352)
                      +...+..|+..+.+.+|+|+      +.++||||.|.+|+|.|.+.      .+...      . +.-..-..|...|++
T Consensus       104 Et~ylt~HK~~cR~aafs~D------G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~  177 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPD------GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVND  177 (430)
T ss_pred             ceEEEeecccceeeeeeCCC------CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccc
Confidence            34456789999999999998      68999999999999999751      11000      0 000011358899999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEe
Q 018675           80 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL  159 (352)
Q Consensus        80 ~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~  159 (352)
                      +.|+|...+|++|+.|++++++|......+.....-....+|++++|+|.|++|+.|.+-.++++||+...+-+.....-
T Consensus       178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd  257 (430)
T KOG0640|consen  178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD  257 (430)
T ss_pred             eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence            99999999999999999999999643211111111223568999999999999999999999999998654322222334


Q ss_pred             ecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCc-ccEEEEEEcCCCCEEEEEeCCCcE
Q 018675          160 QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS-STIWALSFNAKGDKLVSCSDDLTI  238 (352)
Q Consensus       160 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~l~~~~~~~~l~s~~~dg~i  238 (352)
                      ..|...|+++.+++++++.++||.||.|++||-     -+-+|+.++..   +|+ ..|.+..|..+++|+++.|.|..+
T Consensus       258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG-----VS~rCv~t~~~---AH~gsevcSa~Ftkn~kyiLsSG~DS~v  329 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG-----VSNRCVRTIGN---AHGGSEVCSAVFTKNGKYILSSGKDSTV  329 (430)
T ss_pred             cccccceeEEEecCCccEEEEeccCCcEEeecc-----ccHHHHHHHHh---hcCCceeeeEEEccCCeEEeecCCccee
Confidence            568899999999999999999999999999953     23356666543   453 589999999999999999999999


Q ss_pred             EEEcCCccccc---cCCCCccceeeEEeecccCcceEEEEecCCceEEec-CCCCeEEEEEccCCccccCcccceeeecc
Q 018675          239 KIWGADITRMQ---SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG-AADDSVQFFVESKDDLIDGPSYKMLLKKE  314 (352)
Q Consensus       239 ~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~  314 (352)
                      ++|.+...++.   ...+...-...      ..+.++   .....+++.- -..+.+.-|+....+        ......
T Consensus       330 kLWEi~t~R~l~~YtGAg~tgrq~~------rtqAvF---NhtEdyVl~pDEas~slcsWdaRtad--------r~~l~s  392 (430)
T KOG0640|consen  330 KLWEISTGRMLKEYTGAGTTGRQKH------RTQAVF---NHTEDYVLFPDEASNSLCSWDARTAD--------RVALLS  392 (430)
T ss_pred             eeeeecCCceEEEEecCCcccchhh------hhhhhh---cCccceEEccccccCceeeccccchh--------hhhhcc
Confidence            99987654432   11111110000      011111   0112232222 122345556443221        111234


Q ss_pred             cccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          315 KAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       315 ~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      .+|++.+..+..||.+. .++|||.|-.+|.|--
T Consensus       393 lgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  393 LGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYR  425 (430)
T ss_pred             cCCCCCceEEEeCCCCC-ceeeecccceeeeeee
Confidence            68999999999999987 5779999999999953

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=9.4e-31  Score=212.34  Aligned_cols=289  Identities=22%  Similarity=0.370  Sum_probs=221.8

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeee---eecceecceEEEEECCCCCEEEEEeCC
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAV---LEEMHTRTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      |.+.-+-|..|+|+      +++|+|||-||.+.+|+..+++.-...++.   -..++..+|.|+.|+-|..++|+|+.|
T Consensus       211 g~KSh~EcA~FSPD------gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD  284 (508)
T KOG0275|consen  211 GQKSHVECARFSPD------GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD  284 (508)
T ss_pred             ccccchhheeeCCC------CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC
Confidence            56667889999998      689999999999999998776422111111   113578999999999999999999999


Q ss_pred             CcEEEEEccCCceeeeEeec-cccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC
Q 018675           96 ATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT  174 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (352)
                      |.|++|...++.  |+..+. +|+..|+|+.|+.++..+++++.|.++++.-+..+   +++..+.+|..-|+.+.|.++
T Consensus       285 GkIKvWri~tG~--ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG---K~LKEfrGHsSyvn~a~ft~d  359 (508)
T KOG0275|consen  285 GKIKVWRIETGQ--CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG---KCLKEFRGHSSYVNEATFTDD  359 (508)
T ss_pred             CcEEEEEEecch--HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc---hhHHHhcCccccccceEEcCC
Confidence            999999998874  444443 89999999999999999999999999999998766   456778999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEcCCccccccCCC
Q 018675          175 MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGADITRMQSGDG  253 (352)
Q Consensus       175 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~  253 (352)
                      +..+++++.||++++|+...+     .|..++.  ..+...+|+++-.-|. -..++.|...+++.|-.+...-.     
T Consensus       360 G~~iisaSsDgtvkvW~~Ktt-----eC~~Tfk--~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV-----  427 (508)
T KOG0275|consen  360 GHHIISASSDGTVKVWHGKTT-----ECLSTFK--PLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV-----  427 (508)
T ss_pred             CCeEEEecCCccEEEecCcch-----hhhhhcc--CCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE-----
Confidence            999999999999999965443     4544443  2245678888888775 45688899999999886542111     


Q ss_pred             CccceeeEEeec--ccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCC
Q 018675          254 YASWRHLCTISG--YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE  330 (352)
Q Consensus       254 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~  330 (352)
                             ..++.  ...+...+...+|.| .+.+.+.|+.++.+....+.+         -.....|...+-.++.+|..
T Consensus       428 -------rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L---------E~tl~VhEkdvIGl~HHPHq  491 (508)
T KOG0275|consen  428 -------RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL---------ERTLPVHEKDVIGLTHHPHQ  491 (508)
T ss_pred             -------eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce---------eeeeecccccccccccCccc
Confidence                   01111  123344555666765 677788899888886543322         23445688889999999974


Q ss_pred             cceEEEecCCCeEEEEe
Q 018675          331 RRLLASASDDGMIKIWE  347 (352)
Q Consensus       331 ~~~l~s~~~Dg~i~iw~  347 (352)
                       ++|||=++||.+++|.
T Consensus       492 -NllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  492 -NLLASYSEDGLLKLWK  507 (508)
T ss_pred             -chhhhhcccchhhhcC
Confidence             6899999999999996

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.2e-30  Score=211.92  Aligned_cols=255  Identities=31%  Similarity=0.522  Sum_probs=199.6

Q ss_pred             ceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC
Q 018675           72 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~  151 (352)
                      .|..+|+.+-|.|+-..+++++.|.+|++||..+++.  ...+++|...|..|+|+..|.++++++.|-.+++||...  
T Consensus       106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~--  181 (406)
T KOG0295|consen  106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT--  181 (406)
T ss_pred             ccccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCccchhheeHHH--
Confidence            3778999999999999999999999999999988864  667899999999999999999999999999999999753  


Q ss_pred             eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                      .+.++..+.+|...|.++.|-|.+.++++++.|.+|++|++..     ..|+.++.    +|...|..++.+.||..+++
T Consensus       182 ~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t-----g~cv~t~~----~h~ewvr~v~v~~DGti~As  252 (406)
T KOG0295|consen  182 FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT-----GYCVKTFP----GHSEWVRMVRVNQDGTIIAS  252 (406)
T ss_pred             HHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc-----ceeEEecc----CchHhEEEEEecCCeeEEEe
Confidence            3566777889999999999999999999999999999997643     35666654    78899999999999999999


Q ss_pred             EeCCCcEEEEcCCcccccc-CCCCccceeeEEeecccCcceEEEEec-----CCceEEecCCCCeEEEEEccCCccccCc
Q 018675          232 CSDDLTIKIWGADITRMQS-GDGYASWRHLCTISGYHDRTIFSVHWS-----REGIIASGAADDSVQFFVESKDDLIDGP  305 (352)
Q Consensus       232 ~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~s~~~d~~v~~~~~~~~~~~~~~  305 (352)
                      |+.|.++++|-+....... ..+++.  ...++.-.+......+...     +..++.+++.|++|++|+....      
T Consensus       253 ~s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg------  324 (406)
T KOG0295|consen  253 CSNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG------  324 (406)
T ss_pred             cCCCceEEEEEeccchhhhhhhcccc--ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC------
Confidence            9999999999765331110 000000  0001000011110111000     1238999999999999966432      


Q ss_pred             ccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          306 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       306 ~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                         +++.++.+|...|..++|+|.|+ +|+|+.+|+++++||+.+.
T Consensus       325 ---~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  325 ---MCLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNL  366 (406)
T ss_pred             ---eEEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccc
Confidence               44556789999999999999986 6789999999999999764

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.1e-28  Score=225.04  Aligned_cols=249  Identities=29%  Similarity=0.484  Sum_probs=195.9

Q ss_pred             ceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC
Q 018675           72 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~  151 (352)
                      .+...|.++.|+++|+.+++++.|+.+++|+..+.+......+.+|...|.+++|+|++.++++++.|+++++||+... 
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-  235 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-  235 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC-
Confidence            3468899999999999999999999999998754431244556889999999999999999999999999999999322 


Q ss_pred             eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                       ..++.++.+|...|.+++|+|+++++++|+.|++|+||+++..     .+...+    .+|...|.+++|++++.+|++
T Consensus       236 -~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-----~~~~~l----~~hs~~is~~~f~~d~~~l~s  305 (456)
T KOG0266|consen  236 -GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-----ECVRKL----KGHSDGISGLAFSPDGNLLVS  305 (456)
T ss_pred             -CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-----eEEEee----eccCCceEEEEECCCCCEEEE
Confidence             2457788999999999999999999999999999999987652     233333    489999999999999999999


Q ss_pred             EeCCCcEEEEcCCccccccCCCCccceeeEEeecccCc-ceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccce
Q 018675          232 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR-TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM  309 (352)
Q Consensus       232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~  309 (352)
                      ++.|+.|++||+......         ....+...... .+..+.+++++ +++++..|+.+++|+......        
T Consensus       306 ~s~d~~i~vwd~~~~~~~---------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~--------  368 (456)
T KOG0266|consen  306 ASYDGTIRVWDLETGSKL---------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS--------  368 (456)
T ss_pred             cCCCccEEEEECCCCcee---------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc--------
Confidence            999999999998643210         01111121122 57889998876 889999999999997754322        


Q ss_pred             eeecccccCc---ceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          310 LLKKEKAHDM---DVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       310 ~~~~~~~h~~---~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                       .....+|..   .+.+...++.++ ++++|+.|+.|.+|++..
T Consensus       369 -~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  369 -VGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             -eeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCc
Confidence             223345544   444555577775 688999999999999874

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=3.6e-29  Score=214.27  Aligned_cols=304  Identities=21%  Similarity=0.288  Sum_probs=206.4

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..-..|++|+..|+++++.|.      +-.|+|||.|-+|++||...-..-...-..+.--....|++++|++.|..|++
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~------GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLv  231 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPS------GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILV  231 (641)
T ss_pred             cceEeccCCceEEEEeeecCC------CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEE
Confidence            334568899999999999987      67999999999999999753211000000111112458999999999999888


Q ss_pred             EeCCCcEEEEEccCCceee----------eEeeccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEEEEe-
Q 018675           92 ASFDATTCIWEDVGGDYEC----------VATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSVL-  159 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~----------~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-  159 (352)
                      .+.....+|+|-.+..+..          ...-+||...++|.+|+|.. +.|+|++.|+++++||+...+....+... 
T Consensus       232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k  311 (641)
T KOG0772|consen  232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK  311 (641)
T ss_pred             EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence            8888889999854432211          12236899999999999965 57999999999999999765433222211 


Q ss_pred             --ecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcc--cEEEEEEcCCCCEEEEEeCC
Q 018675          160 --QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS--TIWALSFNAKGDKLVSCSDD  235 (352)
Q Consensus       160 --~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~l~~~~~~~~l~s~~~d  235 (352)
                        .+..-.++.++|+|++..+++|..||.|.+|+...-..+...+      ...+|..  .|.+|.|+++|++|++-|.|
T Consensus       312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~------vk~AH~~g~~Itsi~FS~dg~~LlSRg~D  385 (641)
T KOG0772|consen  312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMK------VKDAHLPGQDITSISFSYDGNYLLSRGFD  385 (641)
T ss_pred             cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceE------eeeccCCCCceeEEEeccccchhhhccCC
Confidence              1223467889999999999999999999999764322222111      2346766  99999999999999999999


Q ss_pred             CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCC------CCeEEEEEccCCccccCcccc
Q 018675          236 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAA------DDSVQFFVESKDDLIDGPSYK  308 (352)
Q Consensus       236 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~------d~~v~~~~~~~~~~~~~~~~~  308 (352)
                      +++|+||++..+.    .+..+..+..     .-.-..++|+|+. .+++|.+      .+++.+|+...-+        
T Consensus       386 ~tLKvWDLrq~kk----pL~~~tgL~t-----~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d--------  448 (641)
T KOG0772|consen  386 DTLKVWDLRQFKK----PLNVRTGLPT-----PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD--------  448 (641)
T ss_pred             Cceeeeecccccc----chhhhcCCCc-----cCCCCccccCCCceEEEecccccCCCCCceEEEEecccee--------
Confidence            9999999874321    1111111111     1122345677765 4555533      4567777554321        


Q ss_pred             eeeecccccCcceeEEEecCCCcceEEEecCCCeEEEE
Q 018675          309 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW  346 (352)
Q Consensus       309 ~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw  346 (352)
                       .+++..--...|..+.|+|.=.++++ |+.||+++|+
T Consensus       449 -~v~ki~i~~aSvv~~~WhpkLNQi~~-gsgdG~~~vy  484 (641)
T KOG0772|consen  449 -TVYKIDISTASVVRCLWHPKLNQIFA-GSGDGTAHVY  484 (641)
T ss_pred             -eEEEecCCCceEEEEeecchhhheee-ecCCCceEEE
Confidence             12222223667999999997667665 6668999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.3e-29  Score=192.87  Aligned_cols=241  Identities=23%  Similarity=0.436  Sum_probs=196.8

Q ss_pred             ceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC
Q 018675           72 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~  151 (352)
                      -++++|+++.|+-||++.++++.|.++++|+...+  .++.+..+|..+|..++.+.++..|++|+.|+.+.+||+..++
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk   92 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK   92 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe
Confidence            36789999999999999999999999999998776  5688899999999999999999999999999999999997764


Q ss_pred             eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                         ..+.+.+|..+|+.++|..+...+++|+.|..+++||.+...   ...++.+.+    ....|.++...  +..+++
T Consensus        93 ---v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s---~ePiQilde----a~D~V~Si~v~--~heIva  160 (307)
T KOG0316|consen   93 ---VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS---FEPIQILDE----AKDGVSSIDVA--EHEIVA  160 (307)
T ss_pred             ---eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC---CCccchhhh----hcCceeEEEec--ccEEEe
Confidence               567899999999999999999999999999999999987643   333444432    34568888775  567999


Q ss_pred             EeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCccccee
Q 018675          232 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML  310 (352)
Q Consensus       232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~  310 (352)
                      |+.||++|.||++...+.              ..+...+|.++++++++ ..++++-|+++++.+...         .++
T Consensus       161 GS~DGtvRtydiR~G~l~--------------sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~t---------Gkl  217 (307)
T KOG0316|consen  161 GSVDGTVRTYDIRKGTLS--------------SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKET---------GKL  217 (307)
T ss_pred             eccCCcEEEEEeecceee--------------hhhcCCcceeEEecCCCCEEEEeeccceeeecccch---------hHH
Confidence            999999999998765432              23567789999999976 788889999999885443         244


Q ss_pred             eecccccCc--ceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          311 LKKEKAHDM--DVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       311 ~~~~~~h~~--~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ++.+.+|..  .-.+.+++... ..+++|++||.+.+||+..
T Consensus       218 L~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  218 LKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             HHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEecc
Confidence            556677753  33455666544 4688999999999999854

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.9e-28  Score=197.04  Aligned_cols=284  Identities=20%  Similarity=0.309  Sum_probs=200.2

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcE
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATT   98 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   98 (352)
                      .-.+.|.+++|+|..     ..+++.+|+|++||+|+++..... ..+  ....|.++|.+++|+.||..+++|+.|+.+
T Consensus        25 pP~DsIS~l~FSP~~-----~~~~~A~SWD~tVR~wevq~~g~~-~~k--a~~~~~~PvL~v~WsddgskVf~g~~Dk~~   96 (347)
T KOG0647|consen   25 PPEDSISALAFSPQA-----DNLLAAGSWDGTVRIWEVQNSGQL-VPK--AQQSHDGPVLDVCWSDDGSKVFSGGCDKQA   96 (347)
T ss_pred             CcccchheeEecccc-----CceEEecccCCceEEEEEecCCcc-cch--hhhccCCCeEEEEEccCCceEEeeccCCce
Confidence            456899999999953     357888999999999998764221 112  224588999999999999999999999999


Q ss_pred             EEEEccCCceeeeEeeccccCCeeEEEECCCCc--EEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC
Q 018675           99 CIWEDVGGDYECVATLEGHENEVKSVSWNASGT--LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD  176 (352)
Q Consensus        99 ~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  176 (352)
                      ++||+.++.   ...+..|.++|.++.|-+...  .|+|||+|++|++||.+...++..   +. -.+.+-+++  -...
T Consensus        97 k~wDL~S~Q---~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t---~~-LPeRvYa~D--v~~p  167 (347)
T KOG0647|consen   97 KLWDLASGQ---VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT---LQ-LPERVYAAD--VLYP  167 (347)
T ss_pred             EEEEccCCC---eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeee---ee-ccceeeehh--ccCc
Confidence            999998874   445678999999999976555  799999999999999986654332   22 122333333  2345


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCcc
Q 018675          177 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYAS  256 (352)
Q Consensus       177 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  256 (352)
                      +++.+..++.|.+|++.+.... ++...      ....-.+.+|++.++++..+.|+-+|++-|..++.....  .+   
T Consensus       168 m~vVata~r~i~vynL~n~~te-~k~~~------SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~--~n---  235 (347)
T KOG0647|consen  168 MAVVATAERHIAVYNLENPPTE-FKRIE------SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK--DN---  235 (347)
T ss_pred             eeEEEecCCcEEEEEcCCCcch-hhhhc------CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc--Cc---
Confidence            7888999999999998664321 11111      112346889999999888899999999999876543211  11   


Q ss_pred             ceeeEEee-c-c--cCcceEEEEecCC-ceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCc
Q 018675          257 WRHLCTIS-G-Y--HDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER  331 (352)
Q Consensus       257 ~~~~~~~~-~-~--~~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  331 (352)
                      ..-.|... . .  .--.+.+++|.|. +.+++++.||+..+|+...         +..+.....|..+|++.+|+.+|.
T Consensus       236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda---------r~kLk~s~~~~qpItcc~fn~~G~  306 (347)
T KOG0647|consen  236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA---------RTKLKTSETHPQPITCCSFNRNGS  306 (347)
T ss_pred             eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh---------hhhhhccCcCCCccceeEecCCCC
Confidence            11111110 0 0  1123556788885 5899999999999996432         122334567999999999999987


Q ss_pred             ceEEEecCC
Q 018675          332 RLLASASDD  340 (352)
Q Consensus       332 ~~l~s~~~D  340 (352)
                      .+....|+|
T Consensus       307 ifaYA~gYD  315 (347)
T KOG0647|consen  307 IFAYALGYD  315 (347)
T ss_pred             EEEEEeecc
Confidence            443355555

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=1.3e-28  Score=197.68  Aligned_cols=249  Identities=24%  Similarity=0.426  Sum_probs=193.7

Q ss_pred             ecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCC
Q 018675           70 EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP  149 (352)
Q Consensus        70 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~  149 (352)
                      ...|++.|+.+.|+|+|..+|+|+.|..|.+|+... +.+-..++++|.++|+.+.|+++++.++++|.|.+++.||+..
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            346899999999999999999999999999998543 3344567889999999999999999999999999999999987


Q ss_pred             CCeeEEEEEeecCccCeeEEEEcCCC-CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE
Q 018675          150 GNEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK  228 (352)
Q Consensus       150 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~  228 (352)
                      ++   +...+++|...++.+.-...+ .++.+++.|+++++||++...     +++++.     ...+++++.|..++..
T Consensus       122 G~---~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-----~~~t~~-----~kyqltAv~f~d~s~q  188 (338)
T KOG0265|consen  122 GK---RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-----AIKTFE-----NKYQLTAVGFKDTSDQ  188 (338)
T ss_pred             ce---eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-----hhhccc-----cceeEEEEEecccccc
Confidence            64   567788899888887733233 367789999999999876542     333332     2467999999999999


Q ss_pred             EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCccc
Q 018675          229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY  307 (352)
Q Consensus       229 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~  307 (352)
                      +++|+-|+.|++||++...           ....+. .|..+|+.+..++.+ ++.+.+-|.++++|+.....    +..
T Consensus       189 v~sggIdn~ikvWd~r~~d-----------~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~----p~~  252 (338)
T KOG0265|consen  189 VISGGIDNDIKVWDLRKND-----------GLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA----PSQ  252 (338)
T ss_pred             eeeccccCceeeeccccCc-----------ceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccC----CCC
Confidence            9999999999999985321           122233 477889999999876 88999999999999765421    111


Q ss_pred             ceeeecccc--cC--cceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          308 KMLLKKEKA--HD--MDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       308 ~~~~~~~~~--h~--~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      + .+....+  |.  -....++|+|+++ .+..|+.|..+.+||...
T Consensus       253 R-~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  253 R-CVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTS  297 (338)
T ss_pred             c-eEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeeccc
Confidence            1 1222233  33  3456778999987 578899999999999854

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=1.1e-28  Score=208.53  Aligned_cols=262  Identities=24%  Similarity=0.433  Sum_probs=204.4

Q ss_pred             cceecceEEEEECCCC-CEEEEEeCCCcEEEEEccCC--------ceeeeEeeccccCCeeEEEECCCCc-EEEEeeCCC
Q 018675           71 EMHTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGG--------DYECVATLEGHENEVKSVSWNASGT-LLATCGRDK  140 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~i~~~~~~--------~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~  140 (352)
                      ..|.+.|+.+.+-|+. .++|+++..+.+.|||....        +..+-..+.+|.+.=..++|++... .|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            4588999999999865 56778888899999996432        2223347889998778899998544 699999999


Q ss_pred             cEEEEecCCCCe----eEEEEEeecCccCeeEEEEcCCC-CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcc
Q 018675          141 SVWIWEVMPGNE----FECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS  215 (352)
Q Consensus       141 ~v~vwd~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~  215 (352)
                      +|.+||+.....    ......+.+|...|..++|+|.. ..+++++.|+.+.|||.+.. ..      .......+|..
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~------~~~~~~~ah~~  273 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TS------KPSHSVKAHSA  273 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CC------CCcccccccCC
Confidence            999999864433    44556788999999999999964 57889999999999998752 11      11223358999


Q ss_pred             cEEEEEEcCC-CCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCC--ceEEecCCCCeEE
Q 018675          216 TIWALSFNAK-GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQ  292 (352)
Q Consensus       216 ~i~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~s~~~d~~v~  292 (352)
                      .|++++|+|- +..||||+.|++|++||++..+          ..+.++. .|...++.+.|+|.  .++++++.|+.+.
T Consensus       274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----------~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~  342 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLN----------KPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLN  342 (422)
T ss_pred             ceeEEEeCCCCCceEEeccCCCcEEEeechhcc----------cCceecc-CCCcceEEEEeCCCCCceeEecccCCcEE
Confidence            9999999995 5668899999999999986321          1233333 47888999999995  4899999999999


Q ss_pred             EEEccCCcccc-----CcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          293 FFVESKDDLID-----GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       293 ~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +|+.+..+...     ...+.+++....||...|++++|+|...++++|+++|+.+.||++..
T Consensus       343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            99876533221     22344555667899999999999999999999999999999999863

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.7e-27  Score=232.43  Aligned_cols=273  Identities=19%  Similarity=0.248  Sum_probs=200.4

Q ss_pred             CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCC----c--eeeeEeeccccCCe
Q 018675           48 DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG----D--YECVATLEGHENEV  121 (352)
Q Consensus        48 D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~----~--~~~~~~~~~h~~~v  121 (352)
                      +|-+++|+...-........--...|...|.+++|+|+|+++|+|+.|++|+||+....    .  ..+...+. +...|
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence            56677887654321111110001237889999999999999999999999999986421    0  01122333 35679


Q ss_pred             eEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCCC
Q 018675          122 KSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDN  199 (352)
Q Consensus       122 ~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~  199 (352)
                      .+++|++ .+.+|++++.|++|++||+..+   +.+..+.+|...|++++|+| ++.+|++|+.|+.|++|++...    
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~---~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----  608 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARS---QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----  608 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCC---eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----
Confidence            9999987 4789999999999999998654   34566788999999999997 6789999999999999987643    


Q ss_pred             ceeEeeeeccCCCCcccEEEEEEc-CCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC
Q 018675          200 WHCVQTISESNNGHSSTIWALSFN-AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR  278 (352)
Q Consensus       200 ~~~~~~~~~~~~~h~~~i~~l~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  278 (352)
                       .+...+.     +...|.++.|+ +++.+|++|+.||.|++||++..+.          ....+ ..|...+..+.|.+
T Consensus       609 -~~~~~~~-----~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----------~~~~~-~~h~~~V~~v~f~~  671 (793)
T PLN00181        609 -VSIGTIK-----TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----------PLCTM-IGHSKTVSYVRFVD  671 (793)
T ss_pred             -cEEEEEe-----cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----------cceEe-cCCCCCEEEEEEeC
Confidence             2233332     23568899995 5799999999999999999753211          11122 23667888999987


Q ss_pred             CceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          279 EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       279 ~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      +..+++++.|+++++|+......  .. ....+....+|...++.++|+|++. +|++|+.|+.|+||+..
T Consensus       672 ~~~lvs~s~D~~ikiWd~~~~~~--~~-~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        672 SSTLVSSSTDNTLKLWDLSMSIS--GI-NETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKA  738 (793)
T ss_pred             CCEEEEEECCCEEEEEeCCCCcc--cc-CCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECC
Confidence            78999999999999997653210  00 1122345678999999999999885 78999999999999964

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2e-28  Score=192.41  Aligned_cols=246  Identities=23%  Similarity=0.375  Sum_probs=187.9

Q ss_pred             EEEEEccCCCCCCCccEEEEe-----eCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC-CEEEEEeCCCcE
Q 018675           25 WSLAWKPTAGVDGVAPVFASC-----SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG-KLLATASFDATT   98 (352)
Q Consensus        25 ~~i~~~p~~~~~~~~~~l~s~-----s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i   98 (352)
                      +++.|+|--.   ..-.+|++     ...|++.|-++..++.+-.+..   ..-...+..++|+++. ..+++++.||++
T Consensus        12 ysvqfSPf~~---nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s---~d~~D~LfdV~Wse~~e~~~~~a~GDGSL   85 (311)
T KOG0277|consen   12 YSVQFSPFVE---NRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQS---YDTEDGLFDVAWSENHENQVIAASGDGSL   85 (311)
T ss_pred             ceeEeccccc---chhheeehhhcccccCceEEEEecCCCCCeEEEEe---eecccceeEeeecCCCcceEEEEecCceE
Confidence            5788999531   11223333     2457888888764433322211   2245789999999965 678889999999


Q ss_pred             EEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC-CC
Q 018675           99 CIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MD  176 (352)
Q Consensus        99 ~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~  176 (352)
                      +|||. +....++..++.|..+|.++.|++ ....++++|+|++|++|+....+   .+.++.+|...|-.+.|+|. .+
T Consensus        86 rl~d~-~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~---Sv~Tf~gh~~~Iy~a~~sp~~~n  161 (311)
T KOG0277|consen   86 RLFDL-TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN---SVQTFNGHNSCIYQAAFSPHIPN  161 (311)
T ss_pred             EEecc-CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc---ceEeecCCccEEEEEecCCCCCC
Confidence            99994 344457888999999999999998 45678899999999999976544   46679999999999999995 56


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEcCCccccccCCCCc
Q 018675          177 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVSCSDDLTIKIWGADITRMQSGDGYA  255 (352)
Q Consensus       177 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  255 (352)
                      .++++|.|+.+++||++....     .+.++    .|...|.++.|+. +...++||+.|+.||+||++..+.       
T Consensus       162 lfas~Sgd~~l~lwdvr~~gk-----~~~i~----ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-------  225 (311)
T KOG0277|consen  162 LFASASGDGTLRLWDVRSPGK-----FMSIE----AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-------  225 (311)
T ss_pred             eEEEccCCceEEEEEecCCCc-----eeEEE----eccceeEeecccccCCcEEEecCCCceEEEEehhhccc-------
Confidence            889999999999999876421     12232    6888999999987 566788999999999999752110       


Q ss_pred             cceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEE
Q 018675          256 SWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA  335 (352)
Q Consensus       256 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~  335 (352)
                                                                            .+.++.+|+..|..+.|||....+||
T Consensus       226 ------------------------------------------------------pl~eL~gh~~AVRkvk~Sph~~~lLa  251 (311)
T KOG0277|consen  226 ------------------------------------------------------PLFELNGHGLAVRKVKFSPHHASLLA  251 (311)
T ss_pred             ------------------------------------------------------cceeecCCceEEEEEecCcchhhHhh
Confidence                                                                  01234689999999999999888999


Q ss_pred             EecCCCeEEEEeecc
Q 018675          336 SASDDGMIKIWELAN  350 (352)
Q Consensus       336 s~~~Dg~i~iw~~~~  350 (352)
                      |++.|=++|||+..+
T Consensus       252 SasYDmT~riw~~~~  266 (311)
T KOG0277|consen  252 SASYDMTVRIWDPER  266 (311)
T ss_pred             hccccceEEeccccc
Confidence            999999999999874

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=2.7e-28  Score=215.57  Aligned_cols=281  Identities=22%  Similarity=0.357  Sum_probs=212.4

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEE-EEECC-CCCEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRS-CAWSP-SGKLL   89 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~-~~~~l   89 (352)
                      +.-.++.||+..|..+++.+.       -.++++|.|+++++|+.....  |.....+ ..|.+.|.. +++.+ ++-.|
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~-------~~i~s~sRd~t~~vw~~~~~~--~l~~~~~-~~~~g~i~~~i~y~e~~~~~l   74 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDG-------VCIISGSRDGTVKVWAKKGKQ--YLETHAF-EGPKGFIANSICYAESDKGRL   74 (745)
T ss_pred             eeEEEeccCccchheeEecCC-------eEEeecCCCCceeeeeccCcc--cccceec-ccCcceeeccceeccccCcce
Confidence            344678899999998887663       479999999999999875432  2222222 335555555 66665 55569


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEE
Q 018675           90 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV  169 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~  169 (352)
                      ++|+.|.++.+|...+.  .+..++.+|.+.|+|++...++. +++||+|.++++|.+.     ++...+.+|+..|+++
T Consensus        75 ~~g~~D~~i~v~~~~~~--~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~-----~l~~~l~gH~asVWAv  146 (745)
T KOG0301|consen   75 VVGGMDTTIIVFKLSQA--EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG-----ELVYSLQGHTASVWAV  146 (745)
T ss_pred             EeecccceEEEEecCCC--CchhhhhccccceeeeecCCcCc-eEecccccceEEecch-----hhhcccCCcchheeee
Confidence            99999999999976544  57889999999999999877776 8999999999999863     2345689999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccc
Q 018675          170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ  249 (352)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  249 (352)
                      ..-|++ .+++|+.|.+|++|.-.       .+++    ...+|...|..|++-+++ .++||+.||.|++|++......
T Consensus       147 ~~l~e~-~~vTgsaDKtIklWk~~-------~~l~----tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~  213 (745)
T KOG0301|consen  147 ASLPEN-TYVTGSADKTIKLWKGG-------TLLK----TFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLL  213 (745)
T ss_pred             eecCCC-cEEeccCcceeeeccCC-------chhh----hhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceee
Confidence            999987 68999999999999431       1222    345899999999998775 4789999999999987422111


Q ss_pred             cCCCCccceeeEEeecccCcceEEEE-ecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccC-cceeEEEec
Q 018675          250 SGDGYASWRHLCTISGYHDRTIFSVH-WSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHD-MDVNSVQWS  327 (352)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~s  327 (352)
                                  . ...|.+-+++++ ..+++.+++++.|+++++|...           ++.+. ..|. -.|.++.+.
T Consensus       214 ------------~-~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----------e~~q~-I~lPttsiWsa~~L  268 (745)
T KOG0301|consen  214 ------------E-MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----------ECVQV-ITLPTTSIWSAKVL  268 (745)
T ss_pred             ------------e-eeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----------ceEEE-EecCccceEEEEEe
Confidence                        1 123666788888 5557799999999999999543           12221 1232 368999988


Q ss_pred             CCCcceEEEecCCCeEEEEeecc
Q 018675          328 PGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       328 p~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ++|.  +++|+.||.||||...+
T Consensus       269 ~NgD--Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  269 LNGD--IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             eCCC--EEEeccCceEEEEEecc
Confidence            8886  56899999999999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=207.55  Aligned_cols=257  Identities=25%  Similarity=0.414  Sum_probs=195.5

Q ss_pred             cccCCcccee------eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecc
Q 018675            3 FLDDGNYELR------EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRT   76 (352)
Q Consensus         3 ~~~~~~~~~~------~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~   76 (352)
                      +++|+.+++.      ++..|.||++.|.|+.|..        ..++|||.|.+|++||+++++.+...     ..|...
T Consensus       213 GlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--------rviisGSSDsTvrvWDv~tge~l~tl-----ihHcea  279 (499)
T KOG0281|consen  213 GLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--------RVIVSGSSDSTVRVWDVNTGEPLNTL-----IHHCEA  279 (499)
T ss_pred             ccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--------eEEEecCCCceEEEEeccCCchhhHH-----hhhcce
Confidence            4566666643      3456789999999999864        48999999999999999988654221     347889


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEccCC-ceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEE
Q 018675           77 VRSCAWSPSGKLLATASFDATTCIWEDVGG-DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC  155 (352)
Q Consensus        77 v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  155 (352)
                      |..+.|+.  .++++++.|.++++||.... +..+..++.||..+|+.+.|+.  +++++++.|++|++|++...   ++
T Consensus       280 VLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~---ef  352 (499)
T KOG0281|consen  280 VLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTC---EF  352 (499)
T ss_pred             eEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccce---ee
Confidence            99999984  58999999999999997543 3334456789999999999865  59999999999999998654   57


Q ss_pred             EEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC
Q 018675          156 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD  235 (352)
Q Consensus       156 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d  235 (352)
                      +.++.+|...|.|+++  .++++++||.|.+|++|++...     .|+.-    ..||+.-|.++.|+  .+.+++|+-|
T Consensus       353 vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-----~cLRv----LeGHEeLvRciRFd--~krIVSGaYD  419 (499)
T KOG0281|consen  353 VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-----ACLRV----LEGHEELVRCIRFD--NKRIVSGAYD  419 (499)
T ss_pred             ehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-----HHHHH----HhchHHhhhheeec--Cceeeecccc
Confidence            8889999999999887  5789999999999999987543     23322    34899999999996  5569999999


Q ss_pred             CcEEEEcCCccccccCCCCccceeeEEe-ecccCcceEEEEecCCceEEecCCCCeEEEEEcc
Q 018675          236 LTIKIWGADITRMQSGDGYASWRHLCTI-SGYHDRTIFSVHWSREGIIASGAADDSVQFFVES  297 (352)
Q Consensus       236 g~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~  297 (352)
                      |+||+||+........    .-..+|-. ...|.+.++.+.|+. -.+++++.|.+|.+|+.-
T Consensus       420 GkikvWdl~aaldpra----~~~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  420 GKIKVWDLQAALDPRA----PASTLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWDFL  477 (499)
T ss_pred             ceEEEEecccccCCcc----cccchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEEEEcC
Confidence            9999999864321110    00011111 123566788887753 357888899999999653

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.97  E-value=5.7e-28  Score=213.49  Aligned_cols=310  Identities=23%  Similarity=0.420  Sum_probs=234.4

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecce--ecceEEEEECCCCCEEEEEeC
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH--TRTVRSCAWSPSGKLLATASF   94 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~   94 (352)
                      +.||.+.|+++.|+|.      +..|+|+|.|+++.+|..++...+|.....+...-  ...-..+-|+|++..+++-+.
T Consensus       263 l~GHeDWV~sv~W~p~------~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~  336 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPE------GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR  336 (764)
T ss_pred             hcCcccceEEEEEccc------hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc
Confidence            5699999999999997      45799999999999999988877887655443322  234678899999999999999


Q ss_pred             CCcEEEEEcc-CCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecC-CCCeeEEEEEeecCccCeeEEEEc
Q 018675           95 DATTCIWEDV-GGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM-PGNEFECVSVLQGHAQDVKMVQWH  172 (352)
Q Consensus        95 d~~i~i~~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~h~~~v~~~~~~  172 (352)
                      -|..++|... ...+.......||.+.|+.++|.|.|++|+++|.|.|-+++-.- ....+..+...+-|...++|+++-
T Consensus       337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v  416 (764)
T KOG1063|consen  337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV  416 (764)
T ss_pred             cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence            9999999722 22334445567999999999999999999999999999998642 122344555566788899999998


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCC--------------CC------------------------CC----ceeEeee----
Q 018675          173 PTMDVLFSCSYDNTIKVWWAEDT--------------DS------------------------DN----WHCVQTI----  206 (352)
Q Consensus       173 ~~~~~l~s~~~d~~i~iw~~~~~--------------~~------------------------~~----~~~~~~~----  206 (352)
                      +....+++|.+...+++|.....              +.                        +.    ..+.++.    
T Consensus       417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~  496 (764)
T KOG1063|consen  417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA  496 (764)
T ss_pred             cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence            86667889999999999844210              00                        00    0000000    


Q ss_pred             ---------------------eccCCCCcccEEEEEEcCCCCEEEEEeCCC-----cEEEEcCCccccccCCCCccceee
Q 018675          207 ---------------------SESNNGHSSTIWALSFNAKGDKLVSCSDDL-----TIKIWGADITRMQSGDGYASWRHL  260 (352)
Q Consensus       207 ---------------------~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~  260 (352)
                                           .....||+..|++++.+|+++++||++...     .|++|...           .|.+.
T Consensus       497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~-----------~W~~~  565 (764)
T KOG1063|consen  497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA-----------NWLQV  565 (764)
T ss_pred             chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc-----------chhhh
Confidence                                 012368999999999999999999998654     68899653           34333


Q ss_pred             EEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecC
Q 018675          261 CTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD  339 (352)
Q Consensus       261 ~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~  339 (352)
                      ..+ ..|+-+|+.+.|+|++ +|++++.|.++.+|...++..... .    ......|..-|.+++|+|++.+ |+|+|.
T Consensus       566 ~~L-~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~-~----fa~~k~HtRIIWdcsW~pde~~-FaTaSR  638 (764)
T KOG1063|consen  566 QEL-EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEF-R----FACLKAHTRIIWDCSWSPDEKY-FATASR  638 (764)
T ss_pred             hee-cccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhh-h----hccccccceEEEEcccCcccce-eEEecC
Confidence            322 3588899999999987 899999999999997644322111 1    2235689999999999999874 899999


Q ss_pred             CCeEEEEeecc
Q 018675          340 DGMIKIWELAN  350 (352)
Q Consensus       340 Dg~i~iw~~~~  350 (352)
                      |++|+||....
T Consensus       639 DK~VkVW~~~~  649 (764)
T KOG1063|consen  639 DKKVKVWEEPD  649 (764)
T ss_pred             CceEEEEeccC
Confidence            99999999764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5.9e-28  Score=204.18  Aligned_cols=305  Identities=22%  Similarity=0.259  Sum_probs=224.7

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCcee---eee----------eeeeecceecceEEE
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRF---WNC----------KAVLEEMHTRTVRSC   80 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~---~~~----------~~~~~~~h~~~v~~~   80 (352)
                      +..+..|.-.|.|++++|++      ++.++++.|++|.-|+..+++..   +..          ...-++.|.+.+.++
T Consensus       135 ~~~~~~H~~s~~~vals~d~------~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~  208 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDD------KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL  208 (479)
T ss_pred             ceeeccccCcceEEEeeccc------cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE
Confidence            45677899999999999984      78999999999999998776532   111          011112678889999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEee
Q 018675           81 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ  160 (352)
Q Consensus        81 ~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~  160 (352)
                      +.++||++||+|+.|..+.||+..+.  +++..+.+|.+.|.+++|-.....+++++.|+++++|++..   ...+.++.
T Consensus       209 avS~Dgkylatgg~d~~v~Iw~~~t~--ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~---~s~vetly  283 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRDRHVQIWDCDTL--EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ---LSYVETLY  283 (479)
T ss_pred             EEcCCCcEEEecCCCceEEEecCccc--chhhcccccccceeeeeeecCccceeeeecCCceEEEehhH---hHHHHHHh
Confidence            99999999999999999999998765  56777899999999999988888899999999999999853   23456788


Q ss_pred             cCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 018675          161 GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI  240 (352)
Q Consensus       161 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~i  240 (352)
                      +|+..|..+....-++.+-+|+.|+++++|++.+..       +.+   ..+|...+-+++|-.+ ..+++|+.+|.|.+
T Consensus       284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-------qli---frg~~~sidcv~~In~-~HfvsGSdnG~IaL  352 (479)
T KOG0299|consen  284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-------QLI---FRGGEGSIDCVAFIND-EHFVSGSDNGSIAL  352 (479)
T ss_pred             CCccceeeechhcccceEEeccccceeEEEeccccc-------eee---eeCCCCCeeeEEEecc-cceeeccCCceEEE
Confidence            999999999888777777778899999999885432       111   2367788999998655 56899999999999


Q ss_pred             EcCCccccccCC--CCccceeeEEeecccCcceEEEEecCC-ceEEecCCCCeEEEEEccCCccccCcccceeeeccccc
Q 018675          241 WGADITRMQSGD--GYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH  317 (352)
Q Consensus       241 wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h  317 (352)
                      |++-..+.....  .+.........  .+...|.+++.-+. .++++|+.+|.+++|....+-     ....++... .-
T Consensus       353 Ws~~KKkplf~~~~AHgv~~~~~~~--~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~-----r~i~~l~~l-s~  424 (479)
T KOG0299|consen  353 WSLLKKKPLFTSRLAHGVIPELDPV--NGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL-----RAINLLYSL-SL  424 (479)
T ss_pred             eeecccCceeEeeccccccCCcccc--ccccceeeeEecccCceEEecCCCCceEEEEecCCc-----cccceeeec-cc
Confidence            987543321110  00000000000  01125777766664 589999999999999765431     112233333 25


Q ss_pred             CcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          318 DMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       318 ~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      .+.|++++|+++|++++|..|....+==|-.
T Consensus       425 ~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  425 VGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             ccEEEEEEEccCCCEEEEecccccccceeeE
Confidence            6789999999999988888887765544543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.7e-27  Score=190.90  Aligned_cols=275  Identities=22%  Similarity=0.437  Sum_probs=198.5

Q ss_pred             cCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC--CCCEEEEEeCC
Q 018675           18 EGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP--SGKLLATASFD   95 (352)
Q Consensus        18 ~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d   95 (352)
                      .+|.+-|.|+.|.+.      |..+||||.|++++||+.......|.+.... +.|.++|..+.|.+  =|+.+|+++.|
T Consensus        10 s~h~DlihdVs~D~~------GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~D   82 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFY------GRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYD   82 (361)
T ss_pred             cCCcceeeeeeeccc------CceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecC
Confidence            489999999999886      6899999999999999987777777777666 45999999999965  48999999999


Q ss_pred             CcEEEEEccC-------CceeeeEeeccccCCeeEEEECC--CCcEEEEeeCCCcEEEEecCCCCee---EEEEEe----
Q 018675           96 ATTCIWEDVG-------GDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPGNEF---ECVSVL----  159 (352)
Q Consensus        96 ~~i~i~~~~~-------~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~vwd~~~~~~~---~~~~~~----  159 (352)
                      +++.||....       .++....++....+.|+.|.|.|  -|-.+++++.||.+++|+.......   ...+.+    
T Consensus        83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~  162 (361)
T KOG2445|consen   83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI  162 (361)
T ss_pred             CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence            9999997521       13444566666778999999998  4678999999999999997533211   111112    


Q ss_pred             ---ecCccCeeEEEEcCC---CCEEEEEeCC-----CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC---
Q 018675          160 ---QGHAQDVKMVQWHPT---MDVLFSCSYD-----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK---  225 (352)
Q Consensus       160 ---~~h~~~v~~~~~~~~---~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---  225 (352)
                         ..+.....|+.|+|.   .++++.|+.+     +.+.||...+. .+.|..+.++    .+|+.+|.+|+|.|+   
T Consensus       163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~-~rKw~kva~L----~d~~dpI~di~wAPn~Gr  237 (361)
T KOG2445|consen  163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN-GRKWLKVAEL----PDHTDPIRDISWAPNIGR  237 (361)
T ss_pred             CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC-cceeeeehhc----CCCCCcceeeeeccccCC
Confidence               245567789999975   4567777655     47889965432 2344444433    489999999999996   


Q ss_pred             -CCEEEEEeCCCcEEEEcCCccccc-cCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCcccc
Q 018675          226 -GDKLVSCSDDLTIKIWGADITRMQ-SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLID  303 (352)
Q Consensus       226 -~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~  303 (352)
                       ...||+++.|| |+||.+...+.. ..++                 +.    .++.       -..             
T Consensus       238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee-----------------~~----~~~~-------~~~-------------  275 (361)
T KOG2445|consen  238 SYHLLAVATKDG-VRIFKVKVARSAIEEEE-----------------VL----APDL-------MTD-------------  275 (361)
T ss_pred             ceeeEEEeecCc-EEEEEEeeccchhhhhc-----------------cc----CCCC-------ccc-------------
Confidence             34689999999 999976532110 0000                 00    0000       000             


Q ss_pred             CcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       304 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                        ..-+++.++..|++.|..+.|+=.|. +|+|.|.||.||+|...
T Consensus       276 --l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  276 --LPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             --cceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehhhh
Confidence              11123445678999999999998885 79999999999999753

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2.9e-27  Score=198.70  Aligned_cols=285  Identities=19%  Similarity=0.293  Sum_probs=217.2

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEE
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW  101 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~  101 (352)
                      ..+.++...|.      .+.++||+.|+++.++|...+..+.     ....|...|+.+.|+|+...+++++.|..|++|
T Consensus       220 pgi~ald~~~s------~~~ilTGG~d~~av~~d~~s~q~l~-----~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vw  288 (506)
T KOG0289|consen  220 PGITALDIIPS------SSKILTGGEDKTAVLFDKPSNQILA-----TLKGHTKKITSVKFHKDLDTVITASADEIIRVW  288 (506)
T ss_pred             CCeeEEeecCC------CCcceecCCCCceEEEecchhhhhh-----hccCcceEEEEEEeccchhheeecCCcceEEee
Confidence            46777777775      2579999999999999987654322     225688999999999999999999999999999


Q ss_pred             EccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEE
Q 018675          102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC  181 (352)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  181 (352)
                      ......  +......|.++|+.+..+|.|++|++++.|++..+.|++.+..+..+.. ....-.+++++||||+-++.+|
T Consensus       289 s~~~~s--~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-~~s~v~~ts~~fHpDgLifgtg  365 (506)
T KOG0289|consen  289 SVPLSS--EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-ETSDVEYTSAAFHPDGLIFGTG  365 (506)
T ss_pred             cccccc--CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee-ccccceeEEeeEcCCceEEecc
Confidence            865442  4456678999999999999999999999999999999987765432221 1223458899999999999999


Q ss_pred             eCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeE
Q 018675          182 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLC  261 (352)
Q Consensus       182 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  261 (352)
                      ..|+.++|||+.+...         .....+|..+|.+++|+-+|.+||++++|+.|++||++..+.           ..
T Consensus       366 t~d~~vkiwdlks~~~---------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-----------~k  425 (506)
T KOG0289|consen  366 TPDGVVKIWDLKSQTN---------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-----------FK  425 (506)
T ss_pred             CCCceEEEEEcCCccc---------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-----------cc
Confidence            9999999998866431         123458999999999999999999999999999999874321           11


Q ss_pred             EeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCC
Q 018675          262 TISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD  340 (352)
Q Consensus       262 ~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~D  340 (352)
                      ++.......+.++++++.| +++.++.+=.|+.+...      ...+.+ +.....|.+..+.+.|.... ++++++|.|
T Consensus       426 t~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~------~k~W~~-~~~~~~~sg~st~v~Fg~~a-q~l~s~smd  497 (506)
T KOG0289|consen  426 TIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKK------TKSWTE-IKELADHSGLSTGVRFGEHA-QYLASTSMD  497 (506)
T ss_pred             eeeccccccceeEEEcCCCCeEEeecceeEEEEEecc------ccccee-eehhhhcccccceeeecccc-eEEeeccch
Confidence            2222223357888888877 66666555555544221      122222 34556788889999998766 578999999


Q ss_pred             CeEEEEee
Q 018675          341 GMIKIWEL  348 (352)
Q Consensus       341 g~i~iw~~  348 (352)
                      ..++++.+
T Consensus       498 ~~l~~~a~  505 (506)
T KOG0289|consen  498 AILRLYAL  505 (506)
T ss_pred             hheEEeec
Confidence            99999865

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=6.5e-27  Score=184.61  Aligned_cols=288  Identities=27%  Similarity=0.441  Sum_probs=210.4

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC-CCCEEEEEe
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP-SGKLLATAS   93 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~   93 (352)
                      ..+++|...|.+++|+.+      +..|++++.|+++++|+++....   .+......|.+.|-.+.|+| +...+++++
T Consensus        14 r~~~~~~~~v~Sv~wn~~------g~~lasgs~dktv~v~n~e~~r~---~~~~~~~gh~~svdql~w~~~~~d~~atas   84 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCD------GTKLASGSFDKTVSVWNLERDRF---RKELVYRGHTDSVDQLCWDPKHPDLFATAS   84 (313)
T ss_pred             HHhhhhhhcceEEEEccc------CceeeecccCCceEEEEecchhh---hhhhcccCCCcchhhheeCCCCCcceEEec
Confidence            457799999999999987      57899999999999999876532   12223356888888888987 567899999


Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                      .|.+|++||...++  +....... ++-.-+.|+|+|++++.++.|..|.+.|.+..+.   ....+ ....+.-+.|+.
T Consensus        85 ~dk~ir~wd~r~~k--~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~---~~~~~-~~~e~ne~~w~~  157 (313)
T KOG1407|consen   85 GDKTIRIWDIRSGK--CTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKI---VNEEQ-FKFEVNEISWNN  157 (313)
T ss_pred             CCceEEEEEeccCc--EEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEecccce---eehhc-ccceeeeeeecC
Confidence            99999999998774  34444332 3334588999999999999999999999865432   22211 223566778887


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCC
Q 018675          174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG  253 (352)
Q Consensus       174 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  253 (352)
                      ++.+++.....|.|.|.....     ++.++++    ++|.....++.|+|+|+|||+|+.|..+-+||++..-.     
T Consensus       158 ~nd~Fflt~GlG~v~ILsyps-----Lkpv~si----~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC-----  223 (313)
T KOG1407|consen  158 SNDLFFLTNGLGCVEILSYPS-----LKPVQSI----KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC-----  223 (313)
T ss_pred             CCCEEEEecCCceEEEEeccc-----ccccccc----ccCCcceEEEEECCCCceEeeccccceeeccChhHhhh-----
Confidence            788887777789998874332     2333333    48999999999999999999999999999999752100     


Q ss_pred             CccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcc
Q 018675          254 YASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR  332 (352)
Q Consensus       254 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~  332 (352)
                         .+    ....++-+|..++|+.++ +||+++.|-.|-+-....++        .+.  ...+.++-+.++|+|.. .
T Consensus       224 ---~R----~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd--------~~~--eI~~~~~t~tVAWHPk~-~  285 (313)
T KOG1407|consen  224 ---ER----CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD--------RVW--EIPCEGPTFTVAWHPKR-P  285 (313)
T ss_pred             ---he----eeccccCceEEEEeccCcceeeccCccceEEeEecccCC--------eEE--EeeccCCceeEEecCCC-c
Confidence               01    112345678889999876 89999999888765433221        111  13577889999999975 5


Q ss_pred             eEEEecCC---------CeEEEEeecc
Q 018675          333 LLASASDD---------GMIKIWELAN  350 (352)
Q Consensus       333 ~l~s~~~D---------g~i~iw~~~~  350 (352)
                      +||-+..|         |++|||-+.+
T Consensus       286 LLAyA~ddk~~d~~reag~vKiFG~~~  312 (313)
T KOG1407|consen  286 LLAYACDDKDGDSNREAGTVKIFGLSN  312 (313)
T ss_pred             eeeEEecCCCCccccccceeEEecCCC
Confidence            77766655         6788876543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.4e-28  Score=190.95  Aligned_cols=257  Identities=27%  Similarity=0.494  Sum_probs=198.5

Q ss_pred             cCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC--CCCEEEEEeCC
Q 018675           18 EGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP--SGKLLATASFD   95 (352)
Q Consensus        18 ~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d   95 (352)
                      .+|.+.|..+...-      .++.|||||.|++|+|+....+.... ....+ ..|.++|.-++|..  -|.+||+++.|
T Consensus         8 t~H~D~IHda~lDy------ygkrlATcsSD~tVkIf~v~~n~~s~-ll~~L-~Gh~GPVwqv~wahPk~G~iLAScsYD   79 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDY------YGKRLATCSSDGTVKIFEVRNNGQSK-LLAEL-TGHSGPVWKVAWAHPKFGTILASCSYD   79 (299)
T ss_pred             hhhhhhhhHhhhhh------hcceeeeecCCccEEEEEEcCCCCce-eeeEe-cCCCCCeeEEeecccccCcEeeEeecC
Confidence            47888888765433      36899999999999999987665311 11222 46999999999965  79999999999


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCC--CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                      |.+.||...++.+........|...|++++|.|.  |-.|++++.||+|.|.+..............+|...|+++.|.|
T Consensus        80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap  159 (299)
T KOG1332|consen   80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP  159 (299)
T ss_pred             ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence            9999999888877777777889999999999885  56899999999999999876544444456778999999999998


Q ss_pred             C---C-----------CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC----CEEEEEeCC
Q 018675          174 T---M-----------DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG----DKLVSCSDD  235 (352)
Q Consensus       174 ~---~-----------~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~----~~l~s~~~d  235 (352)
                      -   +           ..|++|+-|+.|+||+..+.   +|....+    +.+|...|..++|.|.-    .+||+|+.|
T Consensus       160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~---~w~~e~~----l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD  232 (299)
T KOG1332|consen  160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD---SWKLERT----LEGHKDWVRDVAWAPSVGLPKSTIASCSQD  232 (299)
T ss_pred             cCCCccccccCcccccceeeccCCccceeeeecCCc---chhhhhh----hhhcchhhhhhhhccccCCCceeeEEecCC
Confidence            5   3           45899999999999976543   4443333    34899999999999963    579999999


Q ss_pred             CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccC
Q 018675          236 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK  298 (352)
Q Consensus       236 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~  298 (352)
                      |++.||..+.       ....|+.  ++.......+++++|+..+ .|+.++.|+.+.+|....
T Consensus       233 g~viIwt~~~-------e~e~wk~--tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  233 GTVIIWTKDE-------EYEPWKK--TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             CcEEEEEecC-------ccCcccc--cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            9999996541       1122321  1222245678999999976 777888899999996543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.6e-27  Score=208.67  Aligned_cols=267  Identities=25%  Similarity=0.418  Sum_probs=203.8

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeecc-cc
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG-HE  118 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~-h~  118 (352)
                      ..+|.| -+..|.+|+..++..     ..+...+...|+++.|+++|++|++|..+|.+.|||....  ..+..+.+ |.
T Consensus       189 n~laVa-lg~~vylW~~~s~~v-----~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~  260 (484)
T KOG0305|consen  189 NVLAVA-LGQSVYLWSASSGSV-----TELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHA  260 (484)
T ss_pred             CeEEEE-ecceEEEEecCCCce-----EEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc--cccccccCCcC
Confidence            466665 467899999876642     1122334689999999999999999999999999997654  23455666 99


Q ss_pred             CCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 018675          119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD  198 (352)
Q Consensus       119 ~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~  198 (352)
                      ..|-+++|+  +..+.+|+.|+.|..+|++..+...  ..+.+|.+.|+.+.|++++.++++|+.|+.+.|||.....  
T Consensus       261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~--~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~--  334 (484)
T KOG0305|consen  261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV--STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE--  334 (484)
T ss_pred             ceeEEEecc--CceEEEecCCCcEEEEEEecchhhh--hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc--
Confidence            999999998  5678999999999999997654322  2478899999999999999999999999999999863321  


Q ss_pred             CceeEeeeeccCCCCcccEEEEEEcCC-CCEEEEEe--CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEE
Q 018675          199 NWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCS--DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVH  275 (352)
Q Consensus       199 ~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  275 (352)
                         ....+    ..|...|.+++|+|- ..+||+|+  .|+.|++|+........           .  ......|.++.
T Consensus       335 ---p~~~~----~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~-----------~--vdtgsQVcsL~  394 (484)
T KOG0305|consen  335 ---PKFTF----TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID-----------S--VDTGSQVCSLI  394 (484)
T ss_pred             ---ccEEE----eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec-----------c--cccCCceeeEE
Confidence               12222    369999999999995 56788764  79999999976432211           0  11345688899


Q ss_pred             ecCCc--eEE-ecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          276 WSREG--IIA-SGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       276 ~~~~~--~~~-s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      |++..  ++. -|-.++.+.+|....         ...+....+|...|..+++|||+. .++||+.|.++++|++..
T Consensus       395 Wsk~~kEi~sthG~s~n~i~lw~~ps---------~~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  395 WSKKYKELLSTHGYSENQITLWKYPS---------MKLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLFD  462 (484)
T ss_pred             EcCCCCEEEEecCCCCCcEEEEeccc---------cceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccccC
Confidence            99875  443 344466789996643         123445689999999999999987 578999999999999854

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.5e-25  Score=173.70  Aligned_cols=304  Identities=23%  Similarity=0.351  Sum_probs=214.9

Q ss_pred             ceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCC------Cc-eeeeeee---eeecceecceEE
Q 018675           10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSA------SS-RFWNCKA---VLEEMHTRTVRS   79 (352)
Q Consensus        10 ~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~------~~-~~~~~~~---~~~~~h~~~v~~   79 (352)
                      +++.+..|+ -+..|.+++|+|.      +.+.|.||+.+++|+-....      .- ....++.   ...+.|.+.|+|
T Consensus        22 ~f~~i~~l~-dsqairav~fhp~------g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc   94 (350)
T KOG0641|consen   22 HFEAINILE-DSQAIRAVAFHPA------GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYC   94 (350)
T ss_pred             ceEEEEEec-chhheeeEEecCC------CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEE
Confidence            356666665 5679999999997      57899999999999864211      10 0001111   112458899999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEccCCcee---eeEeeccccCCeeEEEECC----CCcEEEEee-CCCcEEEEecCCCC
Q 018675           80 CAWSPSGKLLATASFDATTCIWEDVGGDYE---CVATLEGHENEVKSVSWNA----SGTLLATCG-RDKSVWIWEVMPGN  151 (352)
Q Consensus        80 ~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~---~~~~~~~h~~~v~~v~~~~----~~~~l~s~~-~d~~v~vwd~~~~~  151 (352)
                      .+|+|.|++|++|++|.+|++........+   .-..+.-|.+.|+.++|-.    .+.+|++++ .|..|.+-|-..+.
T Consensus        95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~  174 (350)
T KOG0641|consen   95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ  174 (350)
T ss_pred             EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence            999999999999999999998743322111   1234567899999999953    234566654 45666666655443


Q ss_pred             eeEEEEEeecCccCeeEE-EEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCC---CcccEEEEEEcCCCC
Q 018675          152 EFECVSVLQGHAQDVKMV-QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG---HSSTIWALSFNAKGD  227 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~-~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~---h~~~i~~l~~~~~~~  227 (352)
                         ....+.+|+.-|.++ .|  ++-++++|+.|.+|++||++-.     .++.++.....+   ..+.|.+++..|.|+
T Consensus       175 ---~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~-----~~v~~l~~~~~~~glessavaav~vdpsgr  244 (350)
T KOG0641|consen  175 ---GFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVN-----SCVNTLDNDFHDGGLESSAVAAVAVDPSGR  244 (350)
T ss_pred             ---cceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeecc-----ceeeeccCcccCCCcccceeEEEEECCCcc
Confidence               456788999888765 44  4678999999999999987543     233333222111   136899999999999


Q ss_pred             EEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcc
Q 018675          228 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS  306 (352)
Q Consensus       228 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~  306 (352)
                      +|++|-.|....+||++-.++.           ..+. .|...|.++.|+|+. ++++++.|..|++-+... ++.    
T Consensus       245 ll~sg~~dssc~lydirg~r~i-----------q~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla----  307 (350)
T KOG0641|consen  245 LLASGHADSSCMLYDIRGGRMI-----------QRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLA----  307 (350)
T ss_pred             eeeeccCCCceEEEEeeCCcee-----------eeeC-CCccceeEEEeCCCceEEEEecccceEEEeeccc-chh----
Confidence            9999999999999998754432           2222 367789999999975 899999999999985533 121    


Q ss_pred             cceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          307 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       307 ~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      ....+.....|...+..+.|+|.+- -+++.+.|+++.+|.+
T Consensus       308 ~el~~~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  308 HELPIMVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWAL  348 (350)
T ss_pred             hcCceEEEEeccCceEEEEecCccc-eeeeccCcceEEEecc
Confidence            1111222356888899999999875 4679999999999975

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-27  Score=216.49  Aligned_cols=259  Identities=18%  Similarity=0.308  Sum_probs=184.3

Q ss_pred             eeeeeec-CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCc----------------------------e-
Q 018675           12 REIQTLE-GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS----------------------------R-   61 (352)
Q Consensus        12 ~~~~~~~-gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~----------------------------~-   61 (352)
                      ...+.+. +|.+.|+++.|+++      |++|||||.|+.||||.+....                            . 
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~D------GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~  330 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHD------GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEE  330 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCC------CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccc
Confidence            3445666 89999999999997      7999999999999999865400                            0 


Q ss_pred             ------------eeeee--------------eeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeec
Q 018675           62 ------------FWNCK--------------AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE  115 (352)
Q Consensus        62 ------------~~~~~--------------~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~  115 (352)
                                  ...+.              ......|.+.|..++||.+ ++|++++.|.+++||+....  .|+..+ 
T Consensus       331 ~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~--~CL~~F-  406 (712)
T KOG0283|consen  331 KISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK--ECLKVF-  406 (712)
T ss_pred             cccccccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc--ceeeEE-
Confidence                        00000              0001258899999999965 68899999999999987654  567776 


Q ss_pred             cccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 018675          116 GHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED  194 (352)
Q Consensus       116 ~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~  194 (352)
                      .|..-|+||+|+| |.++|++|+-|++|++|.+...+    +.....-..-|++++|.|+|+..+.|+.+|.+++|+..+
T Consensus       407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~----Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~  482 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK----VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG  482 (712)
T ss_pred             ecCCeeEEEEecccCCCcEeecccccceEEeecCcCe----eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccC
Confidence            4999999999999 77899999999999999997543    222222236799999999999999999999999997665


Q ss_pred             CCCCCceeEeeeeccCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeeccc-CcceE
Q 018675          195 TDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH-DRTIF  272 (352)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~  272 (352)
                      .....-..+..-......|. .|+.+.|.|. -..++..+.|.+|||+|.+...+           .+.+.+++ .+.-.
T Consensus       483 lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l-----------v~KfKG~~n~~SQ~  550 (712)
T KOG0283|consen  483 LKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL-----------VHKFKGFRNTSSQI  550 (712)
T ss_pred             CeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh-----------hhhhcccccCCcce
Confidence            32111111111111222344 8999999974 34577788999999999843222           12222221 22233


Q ss_pred             EEEecCC-ceEEecCCCCeEEEEEc
Q 018675          273 SVHWSRE-GIIASGAADDSVQFFVE  296 (352)
Q Consensus       273 ~~~~~~~-~~~~s~~~d~~v~~~~~  296 (352)
                      +..++.+ .+|++++.|..|++|..
T Consensus       551 ~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  551 SASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             eeeEccCCCEEEEeecCceEEEEeC
Confidence            3445554 48999999999999975

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.3e-28  Score=218.04  Aligned_cols=246  Identities=21%  Similarity=0.379  Sum_probs=183.0

Q ss_pred             ceecceEEEEECCCCCEEEEEeCCCcEEEEEccCC-----------------------------c---------------
Q 018675           72 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG-----------------------------D---------------  107 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~-----------------------------~---------------  107 (352)
                      .|.++|.++.||+||++||+|+.|+.|+||.....                             .               
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            69999999999999999999999999999975440                             0               


Q ss_pred             --------------eeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675          108 --------------YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus       108 --------------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                                    ..+...+.||.+.|..++|+.+ ++|+++|.|+||++|++...   .|+.++ .|..-|+|++|+|
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~---~CL~~F-~HndfVTcVaFnP  419 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK---ECLKVF-SHNDFVTCVAFNP  419 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc---ceeeEE-ecCCeeEEEEecc
Confidence                          0123456789999999999986 58899999999999998532   456554 5899999999999


Q ss_pred             -CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCC
Q 018675          174 -TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD  252 (352)
Q Consensus       174 -~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  252 (352)
                       |++++++|+-|+.++||.+.+..-.-|.-          ...-|++++|.|+|++.+.|+-+|.+++|+..-.++....
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~D----------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISDKKVVDWND----------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             cCCCcEeecccccceEEeecCcCeeEeehh----------hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence             67899999999999999887643222211          2367999999999999999999999999987543332110


Q ss_pred             CCccceeeEEe--ecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCCccccCcccceeeecccccC--cceeEEEe
Q 018675          253 GYASWRHLCTI--SGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHD--MDVNSVQW  326 (352)
Q Consensus       253 ~~~~~~~~~~~--~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~~~~  326 (352)
                            ++...  .......|+.+.+.+..  .++..+.|..|++++....+         ++.++.|+.  ..=...+|
T Consensus       490 ------~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~---------lv~KfKG~~n~~SQ~~Asf  554 (712)
T KOG0283|consen  490 ------HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD---------LVHKFKGFRNTSSQISASF  554 (712)
T ss_pred             ------eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh---------hhhhhcccccCCcceeeeE
Confidence                  11000  00011257777777653  58888899999999653322         233344332  23356789


Q ss_pred             cCCCcceEEEecCCCeEEEEee
Q 018675          327 SPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       327 sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      ++||+ .|+++++|..|.||+.
T Consensus       555 s~Dgk-~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  555 SSDGK-HIVSASEDSWVYIWKN  575 (712)
T ss_pred             ccCCC-EEEEeecCceEEEEeC
Confidence            99987 5789999999999997

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.5e-27  Score=189.64  Aligned_cols=247  Identities=23%  Similarity=0.423  Sum_probs=183.5

Q ss_pred             ceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCC--
Q 018675           10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK--   87 (352)
Q Consensus        10 ~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--   87 (352)
                      .+..+..+..|...|++++.+        ++++||||.|-+|+|||+....++...     -.|.+.|+++.|.+.-.  
T Consensus        32 ~l~~lF~~~aH~~sitavAVs--------~~~~aSGssDetI~IYDm~k~~qlg~l-----l~HagsitaL~F~~~~S~s   98 (362)
T KOG0294|consen   32 TLKPLFAFSAHAGSITALAVS--------GPYVASGSSDETIHIYDMRKRKQLGIL-----LSHAGSITALKFYPPLSKS   98 (362)
T ss_pred             eeeccccccccccceeEEEec--------ceeEeccCCCCcEEEEeccchhhhcce-----eccccceEEEEecCCcchh
Confidence            356678889999999999986        479999999999999999876543221     24899999999998764  


Q ss_pred             EEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCee
Q 018675           88 LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK  167 (352)
Q Consensus        88 ~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~  167 (352)
                      .|++|+.||.|.+|+.  +.+.++..+++|.+.|+.++.+|.+.+.++.+.|+.++.|++..++...+.. +.   ...+
T Consensus        99 hLlS~sdDG~i~iw~~--~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~---~~at  172 (362)
T KOG0294|consen   99 HLLSGSDDGHIIIWRV--GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LK---NKAT  172 (362)
T ss_pred             heeeecCCCcEEEEEc--CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cC---Ccce
Confidence            8999999999999985  5678899999999999999999999999999999999999998776544332 21   2334


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccc
Q 018675          168 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR  247 (352)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  247 (352)
                      .+.|+|.+.+++..+.+ .|-||.+...     .....+.     ....+.++.|- ++.+|++|++|+.|++||.+.. 
T Consensus       173 ~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-----~v~~~i~-----~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-  239 (362)
T KOG0294|consen  173 LVSWSPQGDHFVVSGRN-KIDIYQLDNA-----SVFREIE-----NPKRILCATFL-DGSELLVGGDNEWISLKDTDSD-  239 (362)
T ss_pred             eeEEcCCCCEEEEEecc-EEEEEecccH-----hHhhhhh-----ccccceeeeec-CCceEEEecCCceEEEeccCCC-
Confidence            58899999987777654 4788855432     1111221     11345555553 5678889999999999986410 


Q ss_pred             cccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEe-
Q 018675          248 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW-  326 (352)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-  326 (352)
                                                                                   .+...+.+|..+|-++.+ 
T Consensus       240 -------------------------------------------------------------~~~~~~~AH~~RVK~i~~~  258 (362)
T KOG0294|consen  240 -------------------------------------------------------------TPLTEFLAHENRVKDIASY  258 (362)
T ss_pred             -------------------------------------------------------------ccceeeecchhheeeeEEE
Confidence                                                                         001123467777777773 


Q ss_pred             -cCCCcceEEEecCCCeEEEEeecc
Q 018675          327 -SPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       327 -sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                       .|.+ .+|+|+|.||.|+|||++.
T Consensus       259 ~~~~~-~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  259 TNPEH-EYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             ecCCc-eEEEEeccCceEEEEEccc
Confidence             3444 4788888899999998753

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=2.2e-28  Score=204.15  Aligned_cols=291  Identities=19%  Similarity=0.366  Sum_probs=211.4

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      ....+..|.+.|..+.|-+..      ..|+|++.|..|++|+....+.  .....+ ..-.++|+++.|.++++.++++
T Consensus       167 ~~~~ld~h~gev~~v~~l~~s------dtlatgg~Dr~Ik~W~v~~~k~--~~~~tL-aGs~g~it~~d~d~~~~~~iAa  237 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNS------DTLATGGSDRIIKLWNVLGEKS--ELISTL-AGSLGNITSIDFDSDNKHVIAA  237 (459)
T ss_pred             hhhhhhccccccceeEEccCc------chhhhcchhhhhhhhhcccchh--hhhhhh-hccCCCcceeeecCCCceEEee
Confidence            334567899999999998863      5799999999999999765431  111222 1234679999999999999999


Q ss_pred             eCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEc
Q 018675           93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH  172 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~  172 (352)
                      +.|+.+++|++...  ....++.+|++.|+++.|......+++|+.|.+++.||+...   .|...+.. ...+..+...
T Consensus       238 s~d~~~r~Wnvd~~--r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~---~C~kt~l~-~S~cnDI~~~  311 (459)
T KOG0288|consen  238 SNDKNLRLWNVDSL--RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA---YCSKTVLP-GSQCNDIVCS  311 (459)
T ss_pred             cCCCceeeeeccch--hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh---heeccccc-cccccceEec
Confidence            99999999998655  456788999999999999887777999999999999999653   23332221 1233444443


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCC
Q 018675          173 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD  252 (352)
Q Consensus       173 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  252 (352)
                        ...+++|..|+.|++||....+     +.....    . ++.|.+|+.++++..+.+++.|.++++.|++....    
T Consensus       312 --~~~~~SgH~DkkvRfwD~Rs~~-----~~~sv~----~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI----  375 (459)
T KOG0288|consen  312 --ISDVISGHFDKKVRFWDIRSAD-----KTRSVP----L-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI----  375 (459)
T ss_pred             --ceeeeecccccceEEEeccCCc-----eeeEee----c-CcceeeEeeccCCeEEeeecCCCceeeeecccccE----
Confidence              4467899999999999876543     222221    2 34899999999999999999999999999874322    


Q ss_pred             CCccceeeEEeecc-cCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCC
Q 018675          253 GYASWRHLCTISGY-HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE  330 (352)
Q Consensus       253 ~~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~  330 (352)
                           ++.....++ .......+.|+|++ |+++|+.||.+++|......+     .. .. ....-...|++++|+|.|
T Consensus       376 -----~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKl-----E~-~l-~~s~s~~aI~s~~W~~sG  443 (459)
T KOG0288|consen  376 -----RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKL-----EK-VL-SLSTSNAAITSLSWNPSG  443 (459)
T ss_pred             -----EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceE-----EE-Ee-ccCCCCcceEEEEEcCCC
Confidence                 111111111 11225567788876 899999999999997654322     11 11 122222379999999999


Q ss_pred             cceEEEecCCCeEEEEe
Q 018675          331 RRLLASASDDGMIKIWE  347 (352)
Q Consensus       331 ~~~l~s~~~Dg~i~iw~  347 (352)
                      .. |++++.++.+.+|.
T Consensus       444 ~~-Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  444 SG-LLSADKQKAVTLWT  459 (459)
T ss_pred             ch-hhcccCCcceEecC
Confidence            75 56899999999994

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1e-26  Score=212.02  Aligned_cols=276  Identities=29%  Similarity=0.528  Sum_probs=214.2

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEE
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTC   99 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   99 (352)
                      |...+.|..|++        .++++++.|+++++|+...+.....   .+ ..|.+.|.++++..-+..|++|+.|.+++
T Consensus       207 ~~~~~~~~q~~~--------~~~~~~s~~~tl~~~~~~~~~~i~~---~l-~GH~g~V~~l~~~~~~~~lvsgS~D~t~r  274 (537)
T KOG0274|consen  207 DDHVVLCLQLHD--------GFFKSGSDDSTLHLWDLNNGYLILT---RL-VGHFGGVWGLAFPSGGDKLVSGSTDKTER  274 (537)
T ss_pred             Ccchhhhheeec--------CeEEecCCCceeEEeecccceEEEe---ec-cCCCCCceeEEEecCCCEEEEEecCCcEE
Confidence            566788888884        3799999999999999877643221   11 46999999999998889999999999999


Q ss_pred             EEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE
Q 018675          100 IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF  179 (352)
Q Consensus       100 i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  179 (352)
                      +||..++  .+...+.+|.+.|.++...+  ..+++|+.|.+|++|++..+   .++..+.+|..+|.++...  +.+++
T Consensus       275 vWd~~sg--~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~---~~l~l~~~h~~~V~~v~~~--~~~lv  345 (537)
T KOG0274|consen  275 VWDCSTG--ECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG---ACLNLLRGHTGPVNCVQLD--EPLLV  345 (537)
T ss_pred             eEecCCC--cEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc---ceEEEeccccccEEEEEec--CCEEE
Confidence            9998776  67888999999999997654  57888999999999999754   4677788899999999987  77999


Q ss_pred             EEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc-ccccCCCCccce
Q 018675          180 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT-RMQSGDGYASWR  258 (352)
Q Consensus       180 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~  258 (352)
                      +|+.|+.|++|+..     ..++++++.    +|..+|.++.+.+. ..+++|+.|+.|++||++.. +..         
T Consensus       346 sgs~d~~v~VW~~~-----~~~cl~sl~----gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~---------  406 (537)
T KOG0274|consen  346 SGSYDGTVKVWDPR-----TGKCLKSLS----GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCI---------  406 (537)
T ss_pred             EEecCceEEEEEhh-----hceeeeeec----CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhh---------
Confidence            99999999999765     345666554    79999999988765 78999999999999998754 211         


Q ss_pred             eeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccc-cCcceeEEEecCCCcceEEEe
Q 018675          259 HLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA-HDMDVNSVQWSPGERRLLASA  337 (352)
Q Consensus       259 ~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~sp~~~~~l~s~  337 (352)
                        ..+. .|...+..+. ..+..+++++.|++|++|+......         ++...+ |.+.|..+++. +  ..++++
T Consensus       407 --~tl~-~h~~~v~~l~-~~~~~Lvs~~aD~~Ik~WD~~~~~~---------~~~~~~~~~~~v~~l~~~-~--~~il~s  470 (537)
T KOG0274|consen  407 --HTLQ-GHTSLVSSLL-LRDNFLVSSSADGTIKLWDAEEGEC---------LRTLEGRHVGGVSALALG-K--EEILCS  470 (537)
T ss_pred             --hhhc-CCcccccccc-cccceeEeccccccEEEeecccCce---------eeeeccCCcccEEEeecC-c--ceEEEE
Confidence              1111 1222222221 2356899999999999997655332         223334 66889999886 2  246789


Q ss_pred             cCCCeEEEEeeccC
Q 018675          338 SDDGMIKIWELANT  351 (352)
Q Consensus       338 ~~Dg~i~iw~~~~~  351 (352)
                      +.||++++||++.+
T Consensus       471 ~~~~~~~l~dl~~~  484 (537)
T KOG0274|consen  471 SDDGSVKLWDLRSG  484 (537)
T ss_pred             ecCCeeEEEecccC
Confidence            99999999998753

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=2.3e-26  Score=209.28  Aligned_cols=212  Identities=23%  Similarity=0.360  Sum_probs=162.3

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceee---eeeeeeecceecceEEEEECCCC-CEEEE
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFW---NCKAVLEEMHTRTVRSCAWSPSG-KLLAT   91 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~-~~l~s   91 (352)
                      .+.||.+.|++++|+|.+     +.+|+|||.|++|++|++.+.....   .+... ...|...|.+++|+|++ .+|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d-----~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~-L~gH~~~V~~l~f~P~~~~iLaS  143 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFD-----PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVH-LQGHTKKVGIVSFHPSAMNVLAS  143 (493)
T ss_pred             eEeCCCCCEEEEEEcCCC-----CCEEEEEeCCCEEEEEecCCCccccccCcceEE-ecCCCCcEEEEEeCcCCCCEEEE
Confidence            478999999999999943     3689999999999999986542110   11111 24588999999999986 69999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccC-eeEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD-VKMVQ  170 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~-v~~~~  170 (352)
                      |+.|++|+|||..++.  ....+.+|...|.+++|+|++.+|++++.|++|++||++.+.   .+..+.+|... ...+.
T Consensus       144 gs~DgtVrIWDl~tg~--~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~---~v~tl~~H~~~~~~~~~  218 (493)
T PTZ00421        144 AGADMVVNVWDVERGK--AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT---IVSSVEAHASAKSQRCL  218 (493)
T ss_pred             EeCCCEEEEEECCCCe--EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc---EEEEEecCCCCcceEEE
Confidence            9999999999987663  456778899999999999999999999999999999997654   34556677654 34677


Q ss_pred             EcCCCCEEEEEe----CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEcCCc
Q 018675          171 WHPTMDVLFSCS----YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADI  245 (352)
Q Consensus       171 ~~~~~~~l~s~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~-~dg~i~iwd~~~  245 (352)
                      |.+++..+++++    .|+.|++||+.....    ......   ..+...+....|++++.+|++++ .|+.|++||+..
T Consensus       219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~----p~~~~~---~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMAS----PYSTVD---LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             EcCCCCeEEEEecCCCCCCeEEEEeCCCCCC----ceeEec---cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            888877777654    478999998764321    111111   11234566678999999999887 499999999863

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7.7e-28  Score=188.11  Aligned_cols=256  Identities=27%  Similarity=0.428  Sum_probs=196.7

Q ss_pred             eecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCce-eeeEeeccccCCeeEEEEC-C-CCcEEEEeeCCCcEEEE
Q 018675           69 LEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY-ECVATLEGHENEVKSVSWN-A-SGTLLATCGRDKSVWIW  145 (352)
Q Consensus        69 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~-~-~~~~l~s~~~d~~v~vw  145 (352)
                      +...|+..|..+...--|++|||++.|++|+|+...++.. .++.++.+|.++|+.++|- | -|++|++|+.||.|.+|
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            4456888888888888899999999999999999876543 6788999999999999994 4 79999999999999999


Q ss_pred             ecCCCCeeEEEEEeecCccCeeEEEEcCCC--CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc
Q 018675          146 EVMPGNEFECVSVLQGHAQDVKMVQWHPTM--DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN  223 (352)
Q Consensus       146 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~  223 (352)
                      .-..+ ..........|...|++++|-|.+  -+|++++.||.|.+.+....  +.+.    .......|.-.|++++|.
T Consensus        86 ke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~--g~w~----t~ki~~aH~~GvnsVswa  158 (299)
T KOG1332|consen   86 KEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS--GGWT----TSKIVFAHEIGVNSVSWA  158 (299)
T ss_pred             ecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC--CCcc----chhhhhccccccceeeec
Confidence            97554 444456677899999999999864  57899999999999976553  1121    112345799999999999


Q ss_pred             CC---C-----------CEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCC-----ceEEe
Q 018675          224 AK---G-----------DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-----GIIAS  284 (352)
Q Consensus       224 ~~---~-----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~s  284 (352)
                      |.   |           +.|++||.|+.|+||+.+..         .|...+++. .|...+..++|.|.     .++++
T Consensus       159 pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~---------~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS  228 (299)
T KOG1332|consen  159 PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD---------SWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIAS  228 (299)
T ss_pred             CcCCCccccccCcccccceeeccCCccceeeeecCCc---------chhhhhhhh-hcchhhhhhhhccccCCCceeeEE
Confidence            86   4           46999999999999986531         333333332 36677888888874     37999


Q ss_pred             cCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          285 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       285 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      ++.||++.+|......    ...+  ...+......+.+++||+.|. +|+-++.|+.+.+|.-
T Consensus       229 ~SqDg~viIwt~~~e~----e~wk--~tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  229 CSQDGTVIIWTKDEEY----EPWK--KTLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKE  285 (299)
T ss_pred             ecCCCcEEEEEecCcc----Cccc--ccccccCCcceEEEEEecccc-EEEEecCCcEEEEEEe
Confidence            9999999999654211    1111  111233567899999999885 6777777999999974

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=4.2e-26  Score=207.55  Aligned_cols=207  Identities=21%  Similarity=0.328  Sum_probs=153.1

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeee--------eeeecceecceEEEEECC-CCCEEE
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK--------AVLEEMHTRTVRSCAWSP-SGKLLA   90 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~--------~~~~~~h~~~v~~~~~s~-~~~~l~   90 (352)
                      |-..|......++      +..+++++.+.....|+...+..+....        ......|.+.|++++|+| ++++|+
T Consensus        19 ~~~~i~~~~~~~d------~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~La   92 (493)
T PTZ00421         19 HFLNVTPSTALWD------CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLF   92 (493)
T ss_pred             ceeccccccccCC------CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEE
Confidence            3444554444444      2356777777777778754432221100        011245899999999999 889999


Q ss_pred             EEeCCCcEEEEEccCCce-----eeeEeeccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEEEEeecCcc
Q 018675           91 TASFDATTCIWEDVGGDY-----ECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ  164 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~-----~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~  164 (352)
                      +|+.|++|++|+...+..     .++..+.+|...|.+++|+|++ ++|++++.|++|++||+..+.   .+..+.+|..
T Consensus        93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~---~~~~l~~h~~  169 (493)
T PTZ00421         93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK---AVEVIKCHSD  169 (493)
T ss_pred             EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe---EEEEEcCCCC
Confidence            999999999999765321     3456788999999999999975 689999999999999997653   4556778999


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCccc-EEEEEEcCCCCEEEEEe----CCCcEE
Q 018675          165 DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST-IWALSFNAKGDKLVSCS----DDLTIK  239 (352)
Q Consensus       165 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~l~~~~~~~~l~s~~----~dg~i~  239 (352)
                      .|.+++|+|++.+|++++.|+.|++||++...     ....+    .+|... +..+.|.+++..+++++    .|+.|+
T Consensus       170 ~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-----~v~tl----~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk  240 (493)
T PTZ00421        170 QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-----IVSSV----EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIM  240 (493)
T ss_pred             ceEEEEEECCCCEEEEecCCCEEEEEECCCCc-----EEEEE----ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence            99999999999999999999999999876532     22222    245543 34677888888887765    478999


Q ss_pred             EEcCC
Q 018675          240 IWGAD  244 (352)
Q Consensus       240 iwd~~  244 (352)
                      +||++
T Consensus       241 lWDlr  245 (493)
T PTZ00421        241 LWDTR  245 (493)
T ss_pred             EEeCC
Confidence            99874

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=6.5e-28  Score=198.32  Aligned_cols=286  Identities=23%  Similarity=0.364  Sum_probs=209.8

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      .-+..|.||.+.|+|++-+|..     ...+||||.||.|++||+......+..     ..|.+.|+.+.++.  ..+++
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~-----ls~~aSGs~DG~VkiWnlsqR~~~~~f-----~AH~G~V~Gi~v~~--~~~~t  124 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNK-----LSTVASGSCDGEVKIWNLSQRECIRTF-----KAHEGLVRGICVTQ--TSFFT  124 (433)
T ss_pred             cchhhccccccccchhhcCcch-----hhhhhccccCceEEEEehhhhhhhhee-----ecccCceeeEEecc--cceEE
Confidence            3456789999999999999975     357999999999999999876543322     45999999999987  67889


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      ++.|.+++.|.....   +..++-+ ...+..++-+..++.++|||.+  |.+||.....+   +..+.-....+.++.|
T Consensus       125 vgdDKtvK~wk~~~~---p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~P---v~smswG~Dti~svkf  195 (433)
T KOG0268|consen  125 VGDDKTVKQWKIDGP---PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNP---VSSMSWGADSISSVKF  195 (433)
T ss_pred             ecCCcceeeeeccCC---cceeeec-cccccccccccccccccccCce--eeecccccCCc---cceeecCCCceeEEec
Confidence            999999999976542   3444433 4566777766777889999864  88999865443   4445556678999999


Q ss_pred             cCCCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          172 HPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       172 ~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      +|... .|++++.|+.|.+||.+....     ++.+.     .+-.-+.++|+|.+..++++.+|..+..||++...  .
T Consensus       196 NpvETsILas~~sDrsIvLyD~R~~~P-----l~KVi-----~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~  263 (433)
T KOG0268|consen  196 NPVETSILASCASDRSIVLYDLRQASP-----LKKVI-----LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--R  263 (433)
T ss_pred             CCCcchheeeeccCCceEEEecccCCc-----cceee-----eeccccceecCccccceeeccccccceehhhhhhc--c
Confidence            99765 577888999999998875432     11111     12345679999988889999999999999875321  1


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCC
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG  329 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~  329 (352)
                              +... .-.|.+.+..++++|-| -+++|+.|.+|++|-....--      +.+..+  .--..|.++.||-|
T Consensus       264 --------p~~v-~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S------RdiYht--kRMq~V~~Vk~S~D  326 (433)
T KOG0268|consen  264 --------PLNV-HKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS------RDIYHT--KRMQHVFCVKYSMD  326 (433)
T ss_pred             --------cchh-hcccceeEEEeccCCCcchhccccccceEEEeecCCCcc------hhhhhH--hhhheeeEEEEecc
Confidence                    1111 12367788999999977 699999999999995543111      111000  11246999999998


Q ss_pred             CcceEEEecCCCeEEEEee
Q 018675          330 ERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       330 ~~~~l~s~~~Dg~i~iw~~  348 (352)
                      .+ +++|||+|+.||+|.-
T Consensus       327 sk-yi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  327 SK-YIISGSDDGNVRLWKA  344 (433)
T ss_pred             cc-EEEecCCCcceeeeec
Confidence            86 6789999999999975

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=8.9e-26  Score=193.84  Aligned_cols=243  Identities=37%  Similarity=0.615  Sum_probs=193.6

Q ss_pred             ceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC
Q 018675           72 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~  151 (352)
                      .|..+|++++|+|++++|++++.|+.+.+|+..++.  ....+..|...+..+.|+|+++.+++++.|+.+.+|++....
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~   84 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE   84 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence            588999999999999999999999999999987653  345667888899999999999999999999999999987543


Q ss_pred             eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                         ....+..|...+.++.|+|++.++++++.++.+.+|++...     .....+    ..|...|.++.|+|++.++++
T Consensus        85 ---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~----~~~~~~i~~~~~~~~~~~l~~  152 (289)
T cd00200          85 ---CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-----KCLTTL----RGHTDWVNSVAFSPDGTFVAS  152 (289)
T ss_pred             ---ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-----EEEEEe----ccCCCcEEEEEEcCcCCEEEE
Confidence               34456678888999999999888888888999999987532     122222    257788999999999999998


Q ss_pred             EeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCccccee
Q 018675          232 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML  310 (352)
Q Consensus       232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~  310 (352)
                      ++.|+.|++||++..+.           ...+. .+...+.++.+.+++ .+++++.++.+++|+....         ..
T Consensus       153 ~~~~~~i~i~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---------~~  211 (289)
T cd00200         153 SSQDGTIKLWDLRTGKC-----------VATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---------KC  211 (289)
T ss_pred             EcCCCcEEEEEcccccc-----------ceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCC---------ce
Confidence            88899999999753211           11121 345578899999987 7888888999999976532         12


Q ss_pred             eecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       311 ~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ......|...|.+++|+|++ .++++++.||.|++|++..
T Consensus       212 ~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         212 LGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             ecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCC
Confidence            23344788899999999985 4777888899999999864

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=4.8e-28  Score=189.94  Aligned_cols=248  Identities=20%  Similarity=0.380  Sum_probs=195.6

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      .=+.+|+||++.|++.+...+      ....||++.|=+.++||.-++..+.      ...|...|.+|+|+.|..+|++
T Consensus        50 dwigtfeghkgavw~~~l~~n------a~~aasaaadftakvw~a~tgdelh------sf~hkhivk~~af~~ds~~llt  117 (334)
T KOG0278|consen   50 DWIGTFEGHKGAVWSATLNKN------ATRAASAAADFTAKVWDAVTGDELH------SFEHKHIVKAVAFSQDSNYLLT  117 (334)
T ss_pred             CcEEeeeccCcceeeeecCch------hhhhhhhcccchhhhhhhhhhhhhh------hhhhhheeeeEEecccchhhhc
Confidence            446789999999999988765      3578999999999999977664321      2347889999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      |+.+..+++||....+ .+...+.+|.+.|+.+.|....+.|+++++|++|++||.+.+...+.   +. -..+|+++..
T Consensus       118 gg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s---L~-~~s~VtSlEv  192 (334)
T KOG0278|consen  118 GGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS---LE-FNSPVTSLEV  192 (334)
T ss_pred             cchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEE---Ee-cCCCCcceee
Confidence            9999999999876544 34567789999999999998888899999999999999988764433   33 2347899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG  251 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (352)
                      ++++.++ +....+.|++|+..     ++..++...     ....|.+.+++|+...+++|+.|..+..||.+...    
T Consensus       193 s~dG~il-Tia~gssV~Fwdak-----sf~~lKs~k-----~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge----  257 (334)
T KOG0278|consen  193 SQDGRIL-TIAYGSSVKFWDAK-----SFGLLKSYK-----MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE----  257 (334)
T ss_pred             ccCCCEE-EEecCceeEEeccc-----cccceeecc-----CccccccccccCCCceEEecCcceEEEEEeccCCc----
Confidence            9999865 55567889999543     333333321     23568888999999999999999999999876432    


Q ss_pred             CCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccC
Q 018675          252 DGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK  298 (352)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~  298 (352)
                             .+..+...|-.++.++.|+|+| ..++|+.||++++|....
T Consensus       258 -------Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  258 -------EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             -------eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence                   2222323467789999999988 789999999999997653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=6.2e-28  Score=205.21  Aligned_cols=248  Identities=20%  Similarity=0.350  Sum_probs=194.2

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecce-ecceEEEEECCCC-CEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH-TRTVRSCAWSPSG-KLL   89 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~-~~l   89 (352)
                      .++.+|.||...|.+++|++.      +..|+|+|.|+.+++||.+++....+       +| ...++|+.|.|++ +.+
T Consensus       249 ~~lrtf~gH~k~Vrd~~~s~~------g~~fLS~sfD~~lKlwDtETG~~~~~-------f~~~~~~~cvkf~pd~~n~f  315 (503)
T KOG0282|consen  249 RCLRTFKGHRKPVRDASFNNC------GTSFLSASFDRFLKLWDTETGQVLSR-------FHLDKVPTCVKFHPDNQNIF  315 (503)
T ss_pred             ceehhhhcchhhhhhhhcccc------CCeeeeeecceeeeeeccccceEEEE-------EecCCCceeeecCCCCCcEE
Confidence            567889999999999999986      57899999999999999999854221       23 3567999999998 789


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEE
Q 018675           90 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV  169 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~  169 (352)
                      ++|+.|+.|+.||..+++  .+.....|-+.|..+.|-++|.+++++++|+++++|+....-..+.+..  .+...+.++
T Consensus       316 l~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~--~~~hsmP~~  391 (503)
T KOG0282|consen  316 LVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD--PEMHTMPCL  391 (503)
T ss_pred             EEecCCCcEEEEeccchH--HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc--hhhccCcce
Confidence            999999999999998875  4566778889999999999999999999999999999765433322222  233346788


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCc--ccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccc
Q 018675          170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS--STIWALSFNAKGDKLVSCSDDLTIKIWGADITR  247 (352)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  247 (352)
                      ..+|.+..++.=+.|+.|.++........+.      .....||.  +.-..+.|||||.+|++|..||.+.+||.+..+
T Consensus       392 ~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk------kK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k  465 (503)
T KOG0282|consen  392 TLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK------KKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK  465 (503)
T ss_pred             ecCCCCCeehhhccCceEEEEecccccccCH------hhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh
Confidence            9999999999999999999996443322111      11223453  234468999999999999999999999987544


Q ss_pred             cccCCCCccceeeEEeecccCcceEEEEecCC--ceEEecCCCCeEEEE
Q 018675          248 MQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFF  294 (352)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~s~~~d~~v~~~  294 (352)
                      +..           .+. .|++.+..+.|.|.  ..+|+++.||.|++|
T Consensus       466 l~~-----------~lk-ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw  502 (503)
T KOG0282|consen  466 LVS-----------KLK-AHDQPCIGVDWHPVEPSKVATCGWDGLIKIW  502 (503)
T ss_pred             hhh-----------ccc-cCCcceEEEEecCCCcceeEecccCceeEec
Confidence            321           122 35778888999985  479999999999998

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1e-26  Score=184.08  Aligned_cols=219  Identities=19%  Similarity=0.306  Sum_probs=172.8

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      +.+.+++||++.|||++..-+      .+.++|||.|.+++|||.++++.+.+.+      -..+|..+.|+++|.+++.
T Consensus        43 erlGty~GHtGavW~~Did~~------s~~liTGSAD~t~kLWDv~tGk~la~~k------~~~~Vk~~~F~~~gn~~l~  110 (327)
T KOG0643|consen   43 ERLGTYDGHTGAVWCCDIDWD------SKHLITGSADQTAKLWDVETGKQLATWK------TNSPVKRVDFSFGGNLILA  110 (327)
T ss_pred             ceeeeecCCCceEEEEEecCC------cceeeeccccceeEEEEcCCCcEEEEee------cCCeeEEEeeccCCcEEEE
Confidence            467899999999999988665      4789999999999999999987654433      3568999999999998877


Q ss_pred             EeCC-----CcEEEEEccCC-----ceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec
Q 018675           92 ASFD-----ATTCIWEDVGG-----DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG  161 (352)
Q Consensus        92 ~~~d-----~~i~i~~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  161 (352)
                      ...+     +.|.++|....     ...+...+..+.+.++...|.|.++.|++|.+||.|..||++.+..  .+..-.-
T Consensus       111 ~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~--~v~s~~~  188 (327)
T KOG0643|consen  111 STDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE--LVDSDEE  188 (327)
T ss_pred             EehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce--eeechhh
Confidence            6543     57888886532     1234667778889999999999999999999999999999987653  3444556


Q ss_pred             CccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCC-cee--------------------------Eee-------e-
Q 018675          162 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN-WHC--------------------------VQT-------I-  206 (352)
Q Consensus       162 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~--------------------------~~~-------~-  206 (352)
                      |...|+.++++|+..++++++.|.+-++||+..-.... +.+                          +.+       + 
T Consensus       189 h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFE  268 (327)
T KOG0643|consen  189 HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFE  268 (327)
T ss_pred             hccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchh
Confidence            88899999999999999999999999999875421100 000                          000       0 


Q ss_pred             -----------eccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          207 -----------SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       207 -----------~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                                 ....++|-++|++|+|+|+|+..+||+.||.||+.-++
T Consensus       269 ArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  269 ARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             hhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence                       01125799999999999999999999999999998554

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=2.4e-26  Score=203.27  Aligned_cols=325  Identities=23%  Similarity=0.424  Sum_probs=231.0

Q ss_pred             CccceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCc--------------------eee-ee
Q 018675            7 GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS--------------------RFW-NC   65 (352)
Q Consensus         7 ~~~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~--------------------~~~-~~   65 (352)
                      ..-.+....+++||.+.|.+++|....+   ..-+|||+|+|..||||.+....                    ... ..
T Consensus       177 ~~d~f~~v~el~GH~DWIrsl~f~~~~~---~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i  253 (764)
T KOG1063|consen  177 SADSFARVAELEGHTDWIRSLAFARLGG---DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEI  253 (764)
T ss_pred             CCcceeEEEEeeccchhhhhhhhhccCC---CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeE
Confidence            3345678889999999999999976532   24689999999999999753221                    000 00


Q ss_pred             ee-----eeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCC--ceee---eEeeccccCCeeEEEECCCCcEEEE
Q 018675           66 KA-----VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG--DYEC---VATLEGHENEVKSVSWNASGTLLAT  135 (352)
Q Consensus        66 ~~-----~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~--~~~~---~~~~~~h~~~v~~v~~~~~~~~l~s  135 (352)
                      ..     .+...|+.-|+++.|+|.+..|++++.|.++.+|.....  -+..   +..+.+.........|+|+++.+++
T Consensus       254 ~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~  333 (764)
T KOG1063|consen  254 QYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA  333 (764)
T ss_pred             EEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence            00     112359999999999999999999999999999975432  2222   2333444556889999999999999


Q ss_pred             eeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcc
Q 018675          136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS  215 (352)
Q Consensus       136 ~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~  215 (352)
                      -+.-|..++|.-...........+.||...|+.++|+|.|.+|++.|.|-+-+++.--. ....|.-+..    ...|+.
T Consensus       334 ~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg-~q~~wHEiaR----PQiHGy  408 (764)
T KOG1063|consen  334 HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG-RQQEWHEIAR----PQIHGY  408 (764)
T ss_pred             ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccc-cccceeeecc----cccccc
Confidence            99999999998444444444556789999999999999999999999999999985432 2233544333    346999


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc--------------------------------c-cc---cCCC------
Q 018675          216 TIWALSFNAKGDKLVSCSDDLTIKIWGADIT--------------------------------R-MQ---SGDG------  253 (352)
Q Consensus       216 ~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~--------------------------------~-~~---~~~~------  253 (352)
                      .++|++|-+....+++|.++..+|+|+....                                + +.   ...+      
T Consensus       409 Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~  488 (764)
T KOG1063|consen  409 DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC  488 (764)
T ss_pred             cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence            9999999886677899999999999975200                                0 00   0000      


Q ss_pred             -----------------------CccceeeEEeecccCcceEEEEecCCc-eEEecCCCC-----eEEEEEccCCccccC
Q 018675          254 -----------------------YASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADD-----SVQFFVESKDDLIDG  304 (352)
Q Consensus       254 -----------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~-----~v~~~~~~~~~~~~~  304 (352)
                                             ...|.+..++. .|...+++++.++++ .+|+++...     .|++|....      
T Consensus       489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY-GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~------  561 (764)
T KOG1063|consen  489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY-GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN------  561 (764)
T ss_pred             eecccccCchhccCCChHHHHHHhccchhhHHhc-cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc------
Confidence                                   00111111222 256789999999876 566655432     356664322      


Q ss_pred             cccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       305 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                        . ...+.+.+|+..|+.++||||++ +|+++|.|.++.+|+..+
T Consensus       562 --W-~~~~~L~~HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~  603 (764)
T KOG1063|consen  562 --W-LQVQELEGHSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQE  603 (764)
T ss_pred             --h-hhhheecccceEEEEEEECCCCc-EEEEeecCceEEeeeeec
Confidence              1 12335679999999999999997 577999999999999754

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3e-24  Score=174.20  Aligned_cols=292  Identities=15%  Similarity=0.236  Sum_probs=208.2

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ++.+.++.-...|+++.|+++      +.++++++.|.+++||+..+++......     .++..+..+.|......++.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~------G~~litss~dDsl~LYd~~~g~~~~ti~-----skkyG~~~~~Fth~~~~~i~   73 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDD------GLLLITSSEDDSLRLYDSLSGKQVKTIN-----SKKYGVDLACFTHHSNTVIH   73 (311)
T ss_pred             ccccccccCCCceeEEEecCC------CCEEEEecCCCeEEEEEcCCCceeeEee-----cccccccEEEEecCCceEEE
Confidence            445556666789999999997      6899999999999999998775432221     12345677778766666665


Q ss_pred             EeC--CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEE
Q 018675           92 ASF--DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV  169 (352)
Q Consensus        92 ~~~--d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~  169 (352)
                      ++.  |.+|+..+..+.+  .+..+.||...|++++.+|-++.+++++.|++|++||++..+-...   +.  ...-..+
T Consensus        74 sStk~d~tIryLsl~dNk--ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~---l~--~~~~pi~  146 (311)
T KOG1446|consen   74 SSTKEDDTIRYLSLHDNK--YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL---LN--LSGRPIA  146 (311)
T ss_pred             ccCCCCCceEEEEeecCc--eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE---Ee--cCCCcce
Confidence            655  8899988876654  4667899999999999999999999999999999999975432222   21  1223356


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccc
Q 018675          170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ  249 (352)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  249 (352)
                      +|.|+|-++|++.....|++||++.-+.+.+.... +   ..+-....+.|.|+|+|++|+.++..+.+.+.|.-...  
T Consensus       147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~-i---~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~--  220 (311)
T KOG1446|consen  147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFS-I---TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT--  220 (311)
T ss_pred             eECCCCcEEEEecCCCeEEEEEecccCCCCceeEc-c---CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc--
Confidence            89999999999988889999998876666554332 1   11335678899999999999999999999999853211  


Q ss_pred             cCCCCccceeeEEeecc--cCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccc-cCcceeEEE
Q 018675          250 SGDGYASWRHLCTISGY--HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA-HDMDVNSVQ  325 (352)
Q Consensus       250 ~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~  325 (352)
                               ...++..+  ..+...+.+++|++ ++++|+.||.+.+|.....         ..+....+ +.+++.++.
T Consensus       221 ---------~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg---------~~v~~~~~~~~~~~~~~~  282 (311)
T KOG1446|consen  221 ---------VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG---------KKVAVLRGPNGGPVSCVR  282 (311)
T ss_pred             ---------EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC---------cEeeEecCCCCCCccccc
Confidence                     11122211  12223566777876 7888899999999965321         11222333 788899999


Q ss_pred             ecCCCcceEEEecCCCeEEEEee
Q 018675          326 WSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       326 ~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      |+|.- .+++|+  +..+-+|=.
T Consensus       283 fnP~~-~mf~sa--~s~l~fw~p  302 (311)
T KOG1446|consen  283 FNPRY-AMFVSA--SSNLVFWLP  302 (311)
T ss_pred             cCCce-eeeeec--CceEEEEec
Confidence            99964 355554  667877744

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=2.2e-26  Score=213.18  Aligned_cols=256  Identities=25%  Similarity=0.483  Sum_probs=198.3

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCC---C-----------ceeeeeeeeeecceecce
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSA---S-----------SRFWNCKAVLEEMHTRTV   77 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~---~-----------~~~~~~~~~~~~~h~~~v   77 (352)
                      +++.+..-|...|+|+.|+|+      +++||+||+|+.|.+|+...   +           ...|+....+ ..|...|
T Consensus        60 k~l~~m~~h~~sv~CVR~S~d------G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV  132 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPD------GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDV  132 (942)
T ss_pred             hhheeeccccCceeEEEECCC------CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCcc
Confidence            455677789999999999998      68999999999999998762   1           1235555544 3499999


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEE
Q 018675           78 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS  157 (352)
Q Consensus        78 ~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  157 (352)
                      ..+.|+|++.+|++++.|++|.+|+..+.  ..+.++.+|.+.|..+.|.|-|++|++-++|++|++|+...   +.+.+
T Consensus       133 ~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d---w~i~k  207 (942)
T KOG0973|consen  133 LDVNWSPDDSLLVSVSLDNSVIIWNAKTF--ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD---WGIEK  207 (942)
T ss_pred             ceeccCCCccEEEEecccceEEEEccccc--eeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc---ceeeE
Confidence            99999999999999999999999998765  67888999999999999999999999999999999999643   22333


Q ss_pred             EeecCc------cCeeEEEEcCCCCEEEEEeC----CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC--
Q 018675          158 VLQGHA------QDVKMVQWHPTMDVLFSCSY----DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--  225 (352)
Q Consensus       158 ~~~~h~------~~v~~~~~~~~~~~l~s~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~--  225 (352)
                      .+.++.      .-+..+.|+|||.+|++...    -..+.|.     +.+.|+.-..+    .||..++.++.|+|.  
T Consensus       208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii-----eR~tWk~~~~L----vGH~~p~evvrFnP~lf  278 (942)
T KOG0973|consen  208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII-----ERGTWKVDKDL----VGHSAPVEVVRFNPKLF  278 (942)
T ss_pred             eeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE-----ecCCceeeeee----ecCCCceEEEEeChHHh
Confidence            333222      23567899999999987643    2356665     34556554444    489999999999982  


Q ss_pred             ---CC------------EEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCC
Q 018675          226 ---GD------------KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADD  289 (352)
Q Consensus       226 ---~~------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~  289 (352)
                         ..            .+|+|+.|+.|.||.....           +++..+......+|..++|+++| .|.+++.||
T Consensus       279 e~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-----------RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG  347 (942)
T KOG0973|consen  279 ERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-----------RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG  347 (942)
T ss_pred             ccccccCCccCCCcceEEEEEecCCccEEEEecCCC-----------CchhhhhhhhcCceeeeeEcCCCCeEEEEecCC
Confidence               11            4778999999999976432           23333333456789999999998 488999999


Q ss_pred             eEEEEEccCC
Q 018675          290 SVQFFVESKD  299 (352)
Q Consensus       290 ~v~~~~~~~~  299 (352)
                      +|.++...+.
T Consensus       348 tV~~i~Fee~  357 (942)
T KOG0973|consen  348 TVALIHFEEK  357 (942)
T ss_pred             eEEEEEcchH
Confidence            9999876653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.6e-26  Score=193.60  Aligned_cols=277  Identities=20%  Similarity=0.321  Sum_probs=206.8

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEE
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCI  100 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i  100 (352)
                      .+.|++++|+|...     .-+|+++ .-.+.||+..+.....+    + ....+-|+++.|-.||++||.|...|.+++
T Consensus        26 ~~~vssl~fsp~~P-----~d~aVt~-S~rvqly~~~~~~~~k~----~-srFk~~v~s~~fR~DG~LlaaGD~sG~V~v   94 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHP-----YDFAVTS-SVRVQLYSSVTRSVRKT----F-SRFKDVVYSVDFRSDGRLLAAGDESGHVKV   94 (487)
T ss_pred             cCcceeEecCCCCC-----CceEEec-ccEEEEEecchhhhhhh----H-HhhccceeEEEeecCCeEEEccCCcCcEEE
Confidence            36899999999652     2344443 35788898665432111    1 123567999999999999999999999999


Q ss_pred             EEccCCceeeeEeeccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCC-CEE
Q 018675          101 WEDVGGDYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVL  178 (352)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l  178 (352)
                      ||..+ . ..+..+.+|+.+|..+.|+|.+ ..|++|++|+.+++||+....   ....+.+|...|.|.+|+|.. .++
T Consensus        95 fD~k~-r-~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v~~~l~~htDYVR~g~~~~~~~hiv  169 (487)
T KOG0310|consen   95 FDMKS-R-VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---VQAELSGHTDYVRCGDISPANDHIV  169 (487)
T ss_pred             ecccc-H-HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---EEEEecCCcceeEeeccccCCCeEE
Confidence            99433 1 2244678999999999999954 568899999999999986543   355788999999999999964 488


Q ss_pred             EEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccce
Q 018675          179 FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWR  258 (352)
Q Consensus       179 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  258 (352)
                      ++||.||.|++||.+....    .+.++     .|+.+|-++.+=|.|..+|+++. +.||+||+-...          +
T Consensus       170 vtGsYDg~vrl~DtR~~~~----~v~el-----nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~----------q  229 (487)
T KOG0310|consen  170 VTGSYDGKVRLWDTRSLTS----RVVEL-----NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG----------Q  229 (487)
T ss_pred             EecCCCceEEEEEeccCCc----eeEEe-----cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc----------e
Confidence            9999999999998765431    12333     58999999999999999998874 689999974221          1


Q ss_pred             eeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEe
Q 018675          259 HLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA  337 (352)
Q Consensus       259 ~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~  337 (352)
                      .++.+ ..|..+++++.+..++ .|++++-|+.+++|+.+..        + .+. .....++|.+++.+|+++ .++.|
T Consensus       230 ll~~~-~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~--------K-vv~-s~~~~~pvLsiavs~dd~-t~viG  297 (487)
T KOG0310|consen  230 LLTSM-FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY--------K-VVH-SWKYPGPVLSIAVSPDDQ-TVVIG  297 (487)
T ss_pred             ehhhh-hcccceEEEEEeecCCceEeecccccceEEEEccce--------E-EEE-eeecccceeeEEecCCCc-eEEEe
Confidence            11222 2277889999988765 8999999999999975431        1 111 124568999999999886 46789


Q ss_pred             cCCCeEEE
Q 018675          338 SDDGMIKI  345 (352)
Q Consensus       338 ~~Dg~i~i  345 (352)
                      -.||.+.+
T Consensus       298 msnGlv~~  305 (487)
T KOG0310|consen  298 MSNGLVSI  305 (487)
T ss_pred             cccceeee
Confidence            99998765

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=4.5e-25  Score=201.95  Aligned_cols=216  Identities=19%  Similarity=0.325  Sum_probs=158.7

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCcee-e---eeeeeeecceecceEEEEECCCCC
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRF-W---NCKAVLEEMHTRTVRSCAWSPSGK   87 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~-~---~~~~~~~~~h~~~v~~~~~s~~~~   87 (352)
                      ..+..+.||.+.|++++|+|..     +.+|||||.|++|++|++.+.... .   .+.. ....|...|.+++|+|++.
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~-----~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~-~L~gH~~~V~sVaf~P~g~  138 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCF-----SEILASGSEDLTIRVWEIPHNDESVKEIKDPQC-ILKGHKKKISIIDWNPMNY  138 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCC-----CCEEEEEeCCCeEEEEECCCCCccccccccceE-EeecCCCcEEEEEECCCCC
Confidence            3456789999999999999964     368999999999999998754211 0   1111 1245889999999999987


Q ss_pred             E-EEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCe
Q 018675           88 L-LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV  166 (352)
Q Consensus        88 ~-l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v  166 (352)
                      . |++++.|++|++||..++..  ...+. |...|.+++|+|+|.+|++++.|++|++||++.+.   .+..+.+|...+
T Consensus       139 ~iLaSgS~DgtIrIWDl~tg~~--~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~---~i~tl~gH~g~~  212 (568)
T PTZ00420        139 YIMCSSGFDSFVNIWDIENEKR--AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE---IASSFHIHDGGK  212 (568)
T ss_pred             eEEEEEeCCCeEEEEECCCCcE--EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc---EEEEEecccCCc
Confidence            5 57899999999999877642  33443 56789999999999999999999999999997654   345677887654


Q ss_pred             eE-----EEEcCCCCEEEEEeCCC----cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCc
Q 018675          167 KM-----VQWHPTMDVLFSCSYDN----TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT  237 (352)
Q Consensus       167 ~~-----~~~~~~~~~l~s~~~d~----~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~  237 (352)
                      ..     ..|++++.++++++.|+    .|++||+.....    .+...  ....+...+...-..+++.++++|+.|+.
T Consensus       213 ~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~----pl~~~--~ld~~~~~L~p~~D~~tg~l~lsGkGD~t  286 (568)
T PTZ00420        213 NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS----ALVTM--SIDNASAPLIPHYDESTGLIYLIGKGDGN  286 (568)
T ss_pred             eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC----ceEEE--EecCCccceEEeeeCCCCCEEEEEECCCe
Confidence            32     34568888999988774    799999775321    11221  11123333333334556899999999999


Q ss_pred             EEEEcCCc
Q 018675          238 IKIWGADI  245 (352)
Q Consensus       238 i~iwd~~~  245 (352)
                      |++|++..
T Consensus       287 Ir~~e~~~  294 (568)
T PTZ00420        287 CRYYQHSL  294 (568)
T ss_pred             EEEEEccC
Confidence            99998753

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=7e-26  Score=186.56  Aligned_cols=251  Identities=24%  Similarity=0.399  Sum_probs=179.2

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCC
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG  150 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~  150 (352)
                      ..|+.+|.+++.+|+.++++||+.|....+|+..+++  ....+.+|...|+++.|+.+|.+|+||+.+|.|+||+...+
T Consensus        61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg  138 (399)
T KOG0296|consen   61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG  138 (399)
T ss_pred             hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence            4599999999999999999999999999999988876  56788999999999999999999999999999999998766


Q ss_pred             CeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE
Q 018675          151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV  230 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  230 (352)
                      ..   ...+......+..+.|||....|++|+.||.+-+|.+.+..         ..+...||..++++=.|.|+|+.++
T Consensus       139 ~~---~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~---------~~kv~~Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  139 GE---QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA---------LCKVMSGHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             ce---EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc---------eeeEecCCCCCcccccccCCCceEE
Confidence            43   23333445678899999999999999999999999776531         1123458999999999999999999


Q ss_pred             EEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCcccc--Cccc
Q 018675          231 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID--GPSY  307 (352)
Q Consensus       231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~--~~~~  307 (352)
                      ++..||+|++|++....           +++.+..........+.....+ .+..|+.++.+.+.......+..  ....
T Consensus       207 tgy~dgti~~Wn~ktg~-----------p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~  275 (399)
T KOG0296|consen  207 TGYDDGTIIVWNPKTGQ-----------PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV  275 (399)
T ss_pred             EEecCceEEEEecCCCc-----------eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCC
Confidence            99999999999876432           2222221111122222223222 45555566655554332211111  0011


Q ss_pred             ceeeecccccCcceeEE---EecCCCcceEEEecCCCeEEEEeecc
Q 018675          308 KMLLKKEKAHDMDVNSV---QWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       308 ~~~~~~~~~h~~~i~~~---~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ..+   ...+...+.++   .|+..= .+.|+|+.||+|.|||.+.
T Consensus       276 ~~l---~~~~e~~~esve~~~~ss~l-pL~A~G~vdG~i~iyD~a~  317 (399)
T KOG0296|consen  276 PEL---KPSQEELDESVESIPSSSKL-PLAACGSVDGTIAIYDLAA  317 (399)
T ss_pred             ccc---cccchhhhhhhhhccccccc-chhhcccccceEEEEeccc
Confidence            111   12333344444   444443 4788999999999999865

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=7.1e-25  Score=200.67  Aligned_cols=250  Identities=17%  Similarity=0.289  Sum_probs=172.9

Q ss_pred             EeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC-CCEEEEEeCCCcEEEEEccCCce------eeeEeecc
Q 018675           44 SCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDY------ECVATLEG  116 (352)
Q Consensus        44 s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~i~~~~~~~~------~~~~~~~~  116 (352)
                      +|+.++.+++|+......    ...+ ..|.+.|.+++|+|+ +.+|++|+.|++|++|+...+..      .+...+.+
T Consensus        49 gGG~~gvI~L~~~~r~~~----v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g  123 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPP----VIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG  123 (568)
T ss_pred             CCCceeEEEeeecCCCce----EEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec
Confidence            356788899998765321    1122 458899999999997 78999999999999999864321      23446788


Q ss_pred             ccCCeeEEEECCCCcE-EEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 018675          117 HENEVKSVSWNASGTL-LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT  195 (352)
Q Consensus       117 h~~~v~~v~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~  195 (352)
                      |...|.+++|+|++.. |++++.|++|++||+..+..   ...+. |...|.+++|+|++.+|++++.|+.|++||+...
T Consensus       124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~---~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg  199 (568)
T PTZ00420        124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR---AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ  199 (568)
T ss_pred             CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE---EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence            9999999999998875 57899999999999976542   23333 4567999999999999999999999999987653


Q ss_pred             CCCCceeEeeeeccCCCCcccE-----EEEEEcCCCCEEEEEeCCC----cEEEEcCCccccccCCCCccceeeEEeec-
Q 018675          196 DSDNWHCVQTISESNNGHSSTI-----WALSFNAKGDKLVSCSDDL----TIKIWGADITRMQSGDGYASWRHLCTISG-  265 (352)
Q Consensus       196 ~~~~~~~~~~~~~~~~~h~~~i-----~~l~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-  265 (352)
                      .     .+.++    .+|...+     +...|++++.+|+++|.|+    .|+|||++...          ..+..+.. 
T Consensus       200 ~-----~i~tl----~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~----------~pl~~~~ld  260 (568)
T PTZ00420        200 E-----IASSF----HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT----------SALVTMSID  260 (568)
T ss_pred             c-----EEEEE----ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC----------CceEEEEec
Confidence            2     22333    2565543     3345678999999988774    79999986311          11111111 


Q ss_pred             ccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCC
Q 018675          266 YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG  329 (352)
Q Consensus       266 ~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~  329 (352)
                      .....+......+.+ ++++|+.|+++++|+.....+      .. +.. ..+..++..++|.|.
T Consensus       261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~------~~-l~~-~~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI------RK-VNE-YKSCSPFRSFGFLPK  317 (568)
T ss_pred             CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE------Ee-ecc-cccCCCccceEEccc
Confidence            112222222223334 688999999999997754211      11 122 235677888999985

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=8.2e-26  Score=191.12  Aligned_cols=265  Identities=21%  Similarity=0.367  Sum_probs=200.0

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceee------eeeeeeecceecceEEEEECCCC-CEEEE
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFW------NCKAVLEEMHTRTVRSCAWSPSG-KLLAT   91 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~------~~~~~~~~~h~~~v~~~~~s~~~-~~l~s   91 (352)
                      -|.+.|+.+..-|..     ...+||.+..+.+.|||........      .+...+ ..|++.=+.++|++.. -.|++
T Consensus       122 ~h~gEVnRaRymPQn-----p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L-~gH~~eg~glsWn~~~~g~Lls  195 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQN-----PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRL-KGHEKEGYGLSWNRQQEGTLLS  195 (422)
T ss_pred             cCCccchhhhhCCCC-----CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEE-EeecccccccccccccceeEee
Confidence            589999998888864     5789999999999999975432111      111122 4577767889999864 56899


Q ss_pred             EeCCCcEEEEEccCCc-----eeeeEeeccccCCeeEEEECCC-CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccC
Q 018675           92 ASFDATTCIWEDVGGD-----YECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD  165 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~  165 (352)
                      ++.|+++++||.....     ..+...+.+|...|..++|++. ..+|+++++|+.+.+||++.. ..++.....+|...
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~  274 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAE  274 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCc
Confidence            9999999999975432     2345667899999999999984 457999999999999999863 44555677899999


Q ss_pred             eeEEEEcCC-CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEcC
Q 018675          166 VKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       166 v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~s~~~dg~i~iwd~  243 (352)
                      +.|++|.|- +..||+||.|++|.+||+++-..    ++.++    .+|...|..|.|+|.. ..||+++.|+++.+||+
T Consensus       275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~----~lh~~----e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNK----PLHTF----EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL  346 (422)
T ss_pred             eeEEEeCCCCCceEEeccCCCcEEEeechhccc----Cceec----cCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence            999999995 55788999999999998876432    23333    4799999999999974 56889999999999998


Q ss_pred             Ccc-cccc-CCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccC
Q 018675          244 DIT-RMQS-GDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESK  298 (352)
Q Consensus       244 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~  298 (352)
                      ..- ..+. .........+.-+-+.|...|..++|.|..  .+++++.|+.+++|....
T Consensus       347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            642 2211 111122223333445688889999999976  899999999999997653

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.7e-26  Score=188.75  Aligned_cols=247  Identities=24%  Similarity=0.389  Sum_probs=192.1

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccC-CceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCC
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG-GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP  149 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~  149 (352)
                      ..|...|.-+.||++|++||+++.|.+..+|+... ...+...++.+|..+|..+.|+||.++|++|+.|..+++||+..
T Consensus       221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t  300 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT  300 (519)
T ss_pred             hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence            45889999999999999999999999999998643 34566788999999999999999999999999999999999977


Q ss_pred             CCeeEEEEEe-ecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE
Q 018675          150 GNEFECVSVL-QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK  228 (352)
Q Consensus       150 ~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~  228 (352)
                      +..   ...+ .++...+.+++|.||+..+++|+.|+.+.+|+........|+-.         ....|.+++..+||++
T Consensus       301 gd~---~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv---------r~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  301 GDL---RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV---------RDPKVHDLAITYDGKY  368 (519)
T ss_pred             chh---hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc---------ccceeEEEEEcCCCcE
Confidence            643   2222 23456788999999999999999999999998876554444322         2356999999999999


Q ss_pred             EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCccc
Q 018675          229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY  307 (352)
Q Consensus       229 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~  307 (352)
                      +++.+.|..|++++.+......             .......+.+++.+.++ +++..-.+..+.+|+..+.        
T Consensus       369 vl~v~~d~~i~l~~~e~~~dr~-------------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~--------  427 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNREARVDRG-------------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN--------  427 (519)
T ss_pred             EEEEecccceeeechhhhhhhc-------------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh--------
Confidence            9999999999999864321100             01134568888888877 5566677889999976532        


Q ss_pred             ceeeecccccC--cceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          308 KMLLKKEKAHD--MDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       308 ~~~~~~~~~h~--~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                       .++.++.||.  ..|-.-+|.-.+..+++|||+|+.|+||+-.++
T Consensus       428 -~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg  472 (519)
T KOG0293|consen  428 -KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG  472 (519)
T ss_pred             -hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence             2344566664  345555676555568999999999999997653

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=1.9e-25  Score=194.72  Aligned_cols=301  Identities=28%  Similarity=0.428  Sum_probs=210.0

Q ss_pred             CccceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC
Q 018675            7 GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG   86 (352)
Q Consensus         7 ~~~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~   86 (352)
                      ..|+-.+...++||++.|.||+..|.      +..|++||.||+||||.+.++..+++..      ..+.|.|++|+|.+
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~------G~wlasGsdDGtvriWEi~TgRcvr~~~------~d~~I~~vaw~P~~  453 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPS------GEWLASGSDDGTVRIWEIATGRCVRTVQ------FDSEIRSVAWNPLS  453 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCC------cceeeecCCCCcEEEEEeecceEEEEEe------ecceeEEEEecCCC
Confidence            34555667788999999999999986      6899999999999999999986654432      24579999999987


Q ss_pred             C--EEEEEeCCCcEEEEEccCC---------------------------------c--eeeeEeeccccCCeeEEEECCC
Q 018675           87 K--LLATASFDATTCIWEDVGG---------------------------------D--YECVATLEGHENEVKSVSWNAS  129 (352)
Q Consensus        87 ~--~l~s~~~d~~i~i~~~~~~---------------------------------~--~~~~~~~~~h~~~v~~v~~~~~  129 (352)
                      .  .||++-.+ .+.|-+..-+                                 +  ...+...-.|...|+.+.|+..
T Consensus       454 ~~~vLAvA~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk  532 (733)
T KOG0650|consen  454 DLCVLAVAVGE-CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK  532 (733)
T ss_pred             CceeEEEEecC-ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence            5  34443322 2333221111                                 0  0012233457889999999999


Q ss_pred             CcEEEEeeCC---CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeee
Q 018675          130 GTLLATCGRD---KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI  206 (352)
Q Consensus       130 ~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~  206 (352)
                      |.+|++...+   ..|.|+++.....+   ..+......+.++.|||...+|++++ -+.|+||++....     ..+.+
T Consensus       533 GDYlatV~~~~~~~~VliHQLSK~~sQ---~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqe-----lvKkL  603 (733)
T KOG0650|consen  533 GDYLATVMPDSGNKSVLIHQLSKRKSQ---SPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQE-----LVKKL  603 (733)
T ss_pred             CceEEEeccCCCcceEEEEeccccccc---CchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHH-----HHHHH
Confidence            9999988654   57888988654432   22333345678999999999888876 4679999865411     11111


Q ss_pred             eccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEec
Q 018675          207 SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASG  285 (352)
Q Consensus       207 ~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~  285 (352)
                          ......|.+++.+|.|..|+.|+.|+.+..||+++..-    .+..       .-+|...+.++++.+.. .+++|
T Consensus       604 ----~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk----Pyk~-------lr~H~~avr~Va~H~ryPLfas~  668 (733)
T KOG0650|consen  604 ----LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK----PYKT-------LRLHEKAVRSVAFHKRYPLFASG  668 (733)
T ss_pred             ----hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc----hhHH-------hhhhhhhhhhhhhccccceeeee
Confidence                12346788999999999999999999999999875310    0111       12467788888888875 78899


Q ss_pred             CCCCeEEEEEccC-CccccCcccceeeecccccCcc----eeEEEecCCCcceEEEecCCCeEEEE
Q 018675          286 AADDSVQFFVESK-DDLIDGPSYKMLLKKEKAHDMD----VNSVQWSPGERRLLASASDDGMIKIW  346 (352)
Q Consensus       286 ~~d~~v~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~----i~~~~~sp~~~~~l~s~~~Dg~i~iw  346 (352)
                      +.|+++.++-..- .++..++. -..+..+.+|...    |.++.|+|...++ .|+|.||+|++|
T Consensus       669 sdDgtv~Vfhg~VY~Dl~qnpl-iVPlK~L~gH~~~~~~gVLd~~wHP~qpWL-fsAGAd~tirlf  732 (733)
T KOG0650|consen  669 SDDGTVIVFHGMVYNDLLQNPL-IVPLKRLRGHEKTNDLGVLDTIWHPRQPWL-FSAGADGTIRLF  732 (733)
T ss_pred             cCCCcEEEEeeeeehhhhcCCc-eEeeeeccCceeecccceEeecccCCCceE-EecCCCceEEee
Confidence            9999998875431 22322222 1223456778554    9999999998775 589999999998

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.4e-25  Score=199.16  Aligned_cols=306  Identities=20%  Similarity=0.372  Sum_probs=220.1

Q ss_pred             eecCCccceEEEEEccC-CCCC--C--CccEEEEeeCCCeEEEEecCCCc--eeee----------eeee----------
Q 018675           16 TLEGHTDRVWSLAWKPT-AGVD--G--VAPVFASCSGDKTVRIWEQSASS--RFWN----------CKAV----------   68 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~-~~~~--~--~~~~l~s~s~D~~v~~w~~~~~~--~~~~----------~~~~----------   68 (352)
                      .+--|+..||++.--|- -..+  .  ....|+|||.|++||+|++....  ..+.          ..+.          
T Consensus       364 s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~  443 (1080)
T KOG1408|consen  364 SMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDA  443 (1080)
T ss_pred             eeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhc
Confidence            33458888888876661 0000  0  13469999999999999986521  1100          0000          


Q ss_pred             ----eec------ceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC---CCcEEEE
Q 018675           69 ----LEE------MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA---SGTLLAT  135 (352)
Q Consensus        69 ----~~~------~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~s  135 (352)
                          +.+      .-.-.+++++.+|+|++||+|..-|++++|+...-  .....++.|..+|.|+.|+.   ..++|++
T Consensus       444 ~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l--~~~~~~eAHesEilcLeyS~p~~~~kLLAS  521 (1080)
T KOG1408|consen  444 SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL--EYTCFMEAHESEILCLEYSFPVLTNKLLAS  521 (1080)
T ss_pred             cCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh--hhhhheecccceeEEEeecCchhhhHhhhh
Confidence                000      01235789999999999999999999999998654  34567789999999999974   3468999


Q ss_pred             eeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCC--CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCC
Q 018675          136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM--DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH  213 (352)
Q Consensus       136 ~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h  213 (352)
                      ++.|+.|.|+|+.  +.+..+.++.+|...|+++.|--.+  ..+++++.|..|-+ +....... ....  ......-.
T Consensus       522 asrdRlIHV~Dv~--rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~-g~~f--~r~t~t~~  595 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVK--RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASS-GRLF--PRHTQTLS  595 (1080)
T ss_pred             ccCCceEEEEecc--cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccC-ceec--cccccccc
Confidence            9999999999984  4556677888999999999997665  56889999998744 32221110 0000  00000011


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeec--ccCcceEEEEecCCc-eEEecCCCCe
Q 018675          214 SSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG--YHDRTIFSVHWSREG-IIASGAADDS  290 (352)
Q Consensus       214 ~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~~s~~~d~~  290 (352)
                      ...++.++..|..+++++++.|..|+||++...++           ...+.+  .+++.+..+..+|++ |+++.+.|++
T Consensus       596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-----------~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt  664 (1080)
T KOG1408|consen  596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-----------VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT  664 (1080)
T ss_pred             cceEEEeeeCCCcceEEEEecccceEEEeccccce-----------eeeecccccCCCceEEEEECCCccEEEEeecCCc
Confidence            35788999999999999999999999999864432           122222  356778888889987 7889999999


Q ss_pred             EEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          291 VQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       291 v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +.+++...+         +++.+..||+..|+.+.|++|-+ .|++++.||.|.||.+..
T Consensus       665 l~~~Df~sg---------EcvA~m~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  665 LCFVDFVSG---------ECVAQMTGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eEEEEeccc---------hhhhhhcCcchheeeeeecccch-hheeecCCceEEEEECch
Confidence            999976543         33445679999999999999876 677999999999999853

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=3.4e-26  Score=185.92  Aligned_cols=249  Identities=19%  Similarity=0.358  Sum_probs=178.0

Q ss_pred             ceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeee------EeeccccCCeeEEEECCCCcEEEEeeCCCcEEEE
Q 018675           72 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECV------ATLEGHENEVKSVSWNASGTLLATCGRDKSVWIW  145 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~------~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vw  145 (352)
                      .....+.|..|+|||++|++|+.||.|-+|+..+++...-      ..+--++.+|.|++|+.+.+.+++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            3456788999999999999999999999999877754221      1222467899999999999999999999999999


Q ss_pred             ecCCCCeeEEEEEee-cCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcC
Q 018675          146 EVMPGNEFECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA  224 (352)
Q Consensus       146 d~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~  224 (352)
                      .+..+   .|+..+. +|+..|+|+.|+.++..+++++.|.++++--+..     .++++    ...||.+.|+...|.+
T Consensus       291 ri~tG---~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-----GK~LK----EfrGHsSyvn~a~ft~  358 (508)
T KOG0275|consen  291 RIETG---QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-----GKCLK----EFRGHSSYVNEATFTD  358 (508)
T ss_pred             EEecc---hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-----chhHH----HhcCccccccceEEcC
Confidence            99766   3555554 8999999999999999999999999999984332     23333    3458999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCCccc
Q 018675          225 KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLI  302 (352)
Q Consensus       225 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~  302 (352)
                      +|.++++++.||+|++|+.+.....     .+.++.     ..+-++.++..-|.+  .++.+...+++++....++.+.
T Consensus       359 dG~~iisaSsDgtvkvW~~KtteC~-----~Tfk~~-----~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr  428 (508)
T KOG0275|consen  359 DGHHIISASSDGTVKVWHGKTTECL-----STFKPL-----GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR  428 (508)
T ss_pred             CCCeEEEecCCccEEEecCcchhhh-----hhccCC-----CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe
Confidence            9999999999999999987643221     111111     122334444333322  4455555666666543322111


Q ss_pred             cCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          303 DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       303 ~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                            .. .......+...++.+||.|.+++ ..++|+.+.-|.+..
T Consensus       429 ------sf-sSGkREgGdFi~~~lSpkGewiY-cigED~vlYCF~~~s  468 (508)
T KOG0275|consen  429 ------SF-SSGKREGGDFINAILSPKGEWIY-CIGEDGVLYCFSVLS  468 (508)
T ss_pred             ------ee-ccCCccCCceEEEEecCCCcEEE-EEccCcEEEEEEeec
Confidence                  10 11112234566677899998755 688999999887743

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=7e-25  Score=184.43  Aligned_cols=251  Identities=24%  Similarity=0.365  Sum_probs=191.2

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..+.+|+||...|+++.++|+.      ..++++|.|..+++|......    ++ .....|..+|+.+..+|+|.+|++
T Consensus       252 q~l~~~~Gh~kki~~v~~~~~~------~~v~~aSad~~i~vws~~~~s----~~-~~~~~h~~~V~~ls~h~tgeYlls  320 (506)
T KOG0289|consen  252 QILATLKGHTKKITSVKFHKDL------DTVITASADEIIRVWSVPLSS----EP-TSSRPHEEPVTGLSLHPTGEYLLS  320 (506)
T ss_pred             hhhhhccCcceEEEEEEeccch------hheeecCCcceEEeecccccc----Cc-cccccccccceeeeeccCCcEEEE
Confidence            4567899999999999999973      578999999999999875442    12 223458999999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      ++.|+...+.|..++..-....-++..-.+++..|+|||.+|.+|..|+.|++||+....   .+..+.+|..+|+.++|
T Consensus       321 As~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~---~~a~Fpght~~vk~i~F  397 (506)
T KOG0289|consen  321 ASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT---NVAKFPGHTGPVKAISF  397 (506)
T ss_pred             ecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc---ccccCCCCCCceeEEEe
Confidence            999999999998877532222222233468999999999999999999999999997654   46778899999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG  251 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (352)
                      +.+|-+|+++..|+.|++||++...  +++   ++.-   .....+.+++|.+.|.||+.++.|=+|.+++-.       
T Consensus       398 sENGY~Lat~add~~V~lwDLRKl~--n~k---t~~l---~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~-------  462 (506)
T KOG0289|consen  398 SENGYWLATAADDGSVKLWDLRKLK--NFK---TIQL---DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKK-------  462 (506)
T ss_pred             ccCceEEEEEecCCeEEEEEehhhc--ccc---eeec---cccccceeEEEcCCCCeEEeecceeEEEEEecc-------
Confidence            9999999999999999999987543  222   2211   122479999999999999999888666666422       


Q ss_pred             CCCccceeeEEeecccCcceEEEEecCC-ceEEecCCCCeEEEE
Q 018675          252 DGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFF  294 (352)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~s~~~d~~v~~~  294 (352)
                        ...|.....+. .|.+....+.|... .++++++-|..++++
T Consensus       463 --~k~W~~~~~~~-~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  463 --TKSWTEIKELA-DHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             --cccceeeehhh-hcccccceeeecccceEEeeccchhheEEe
Confidence              13455443332 23334455666554 378888888887766

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=1.2e-25  Score=181.76  Aligned_cols=212  Identities=23%  Similarity=0.434  Sum_probs=164.3

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccC------------C----ceeeeEeeccccCCeeEEEECCCCcEEE
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG------------G----DYECVATLEGHENEVKSVSWNASGTLLA  134 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~------------~----~~~~~~~~~~h~~~v~~v~~~~~~~~l~  134 (352)
                      ..|+.++++.+|+|||.++|+|+.|-+|+|.|.+.            +    .-..+.++..|..+|+++.|+|....|+
T Consensus       109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi  188 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI  188 (430)
T ss_pred             eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence            35899999999999999999999999999998641            1    1124567778999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCc
Q 018675          135 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS  214 (352)
Q Consensus       135 s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~  214 (352)
                      +++.|++|+++|...... +..........++.++.|+|.|.+|+.|..-..+++||+..     ++|...-. ...+|.
T Consensus       189 S~srD~tvKlFDfsK~sa-KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T-----~Qcfvsan-Pd~qht  261 (430)
T KOG0640|consen  189 SGSRDNTVKLFDFSKTSA-KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT-----YQCFVSAN-PDDQHT  261 (430)
T ss_pred             eccCCCeEEEEecccHHH-HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc-----eeEeeecC-cccccc
Confidence            999999999999853221 11111223456899999999999999999999999997654     34443222 345799


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEE
Q 018675          215 STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFF  294 (352)
Q Consensus       215 ~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~  294 (352)
                      ..|+++.+++.+.+.++++.||.||+||--..+                      .|                       
T Consensus       262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r----------------------Cv-----------------------  296 (430)
T KOG0640|consen  262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR----------------------CV-----------------------  296 (430)
T ss_pred             cceeEEEecCCccEEEEeccCCcEEeeccccHH----------------------HH-----------------------
Confidence            999999999999999999999999999731100                      00                       


Q ss_pred             EccCCccccCcccceeeeccccc-CcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          295 VESKDDLIDGPSYKMLLKKEKAH-DMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                                      ......| ...|.++.|.-+++ ++.|.|.|.++++|++..+
T Consensus       297 ----------------~t~~~AH~gsevcSa~Ftkn~k-yiLsSG~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  297 ----------------RTIGNAHGGSEVCSAVFTKNGK-YILSSGKDSTVKLWEISTG  337 (430)
T ss_pred             ----------------HHHHhhcCCceeeeEEEccCCe-EEeecCCcceeeeeeecCC
Confidence                            0011244 35799999999886 5679999999999999764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=7.2e-25  Score=185.61  Aligned_cols=255  Identities=24%  Similarity=0.384  Sum_probs=194.1

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCcee---------------eeEee-ccccCCeeEEEECCCCcEEE
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE---------------CVATL-EGHENEVKSVSWNASGTLLA  134 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~---------------~~~~~-~~h~~~v~~v~~~~~~~~l~  134 (352)
                      ..|..++.+++++|++.+..+++.|++|.-|+..++...               +...- ++|...+.+++.+++|.+|+
T Consensus       139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla  218 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA  218 (479)
T ss_pred             ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence            458889999999999999999999999999987654311               00111 37888999999999999999


Q ss_pred             EeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCc
Q 018675          135 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS  214 (352)
Q Consensus       135 s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~  214 (352)
                      +|+.|..|.||+.++..   .+..+.+|...|.+++|...-..+++++.|+.+++|++...         .+.+...+|+
T Consensus       219 tgg~d~~v~Iw~~~t~e---hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~---------s~vetlyGHq  286 (479)
T KOG0299|consen  219 TGGRDRHVQIWDCDTLE---HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL---------SYVETLYGHQ  286 (479)
T ss_pred             ecCCCceEEEecCcccc---hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh---------HHHHHHhCCc
Confidence            99999999999987554   35568899999999999877678999999999999976432         2234556999


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEE
Q 018675          215 STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFF  294 (352)
Q Consensus       215 ~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~  294 (352)
                      ..|.+|.....++.+-.|+.|+++++|++....          +.   +...+...+-++++-.+..+++|+.||.|.+|
T Consensus       287 d~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees----------ql---ifrg~~~sidcv~~In~~HfvsGSdnG~IaLW  353 (479)
T KOG0299|consen  287 DGVLGIDALSRERCVTVGGRDRTVRLWKIPEES----------QL---IFRGGEGSIDCVAFINDEHFVSGSDNGSIALW  353 (479)
T ss_pred             cceeeechhcccceEEeccccceeEEEeccccc----------ee---eeeCCCCCeeeEEEecccceeeccCCceEEEe
Confidence            999999888777776677799999999873110          01   11124557888888888899999999999999


Q ss_pred             EccCC-ccccCcccceeeecc--cccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          295 VESKD-DLIDGPSYKMLLKKE--KAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       295 ~~~~~-~~~~~~~~~~~~~~~--~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      ...+. .++.....+.+....  ..+...|++++..|.. .++|||+.+|.||+|.+...
T Consensus       354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             eecccCceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCC
Confidence            76432 222222222222111  2334589999999965 58999999999999998754

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=2.6e-24  Score=172.86  Aligned_cols=302  Identities=20%  Similarity=0.325  Sum_probs=206.7

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCce------eeeeee----eeecceecceEEEEECC-CCC
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSR------FWNCKA----VLEEMHTRTVRSCAWSP-SGK   87 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~------~~~~~~----~~~~~h~~~v~~~~~s~-~~~   87 (352)
                      .|-+.|+++...|..     +.++++|+.||.+.+||++....      +.+.+.    ..+..|+-.|.++.|=| |..
T Consensus        41 ~HgGsvNsL~id~te-----grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTE-----GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             cCCCccceeeecccc-----ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence            588999999998875     68999999999999999875421      111111    12345778899999988 667


Q ss_pred             EEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCC---CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCcc
Q 018675           88 LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS---GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ  164 (352)
Q Consensus        88 ~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~  164 (352)
                      ++.++++|.++++||..+.+  ....++ -.+.|.+-+++|-   ..++++|..|-.|++-|+..+.   +-+.+.+|.+
T Consensus       116 mFtssSFDhtlKVWDtnTlQ--~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs---~sH~LsGHr~  189 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQ--EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS---FSHTLSGHRD  189 (397)
T ss_pred             eeecccccceEEEeecccce--eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc---ceeeeccccC
Confidence            88999999999999965543  233332 3567888888873   4578888889999999998764   5678999999


Q ss_pred             CeeEEEEcCCCCE-EEEEeCCCcEEEEecCCCC-------CCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCC
Q 018675          165 DVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTD-------SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL  236 (352)
Q Consensus       165 ~v~~~~~~~~~~~-l~s~~~d~~i~iw~~~~~~-------~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg  236 (352)
                      .|.++.|+|...+ |++|+.|+.|++||++...       ..+.+... +.+...+|-+.|+.++|..++.++++++.|.
T Consensus       190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p-~~~~n~ah~gkvngla~tSd~~~l~~~gtd~  268 (397)
T KOG4283|consen  190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPP-ILKTNTAHYGKVNGLAWTSDARYLASCGTDD  268 (397)
T ss_pred             ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCc-cccccccccceeeeeeecccchhhhhccCcc
Confidence            9999999998764 7899999999999987641       11111111 1123457889999999999999999999999


Q ss_pred             cEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccc
Q 018675          237 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA  316 (352)
Q Consensus       237 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~  316 (352)
                      ++++|.....+- ...+..   +.+..+..+ ..+ .+.....+.++-.-.++.+.++.....         ..+....+
T Consensus       269 r~r~wn~~~G~n-tl~~~g---~~~~n~~~~-~~~-~~~~~~s~vfv~~p~~~~lall~~~sg---------s~ir~l~~  333 (397)
T KOG4283|consen  269 RIRVWNMESGRN-TLREFG---PIIHNQTTS-FAV-HIQSMDSDVFVLFPNDGSLALLNLLEG---------SFVRRLST  333 (397)
T ss_pred             ceEEeecccCcc-cccccc---ccccccccc-ceE-EEeecccceEEEEecCCeEEEEEccCc---------eEEEeeec
Confidence            999997643211 110000   000000000 000 011112233443444466666543221         23445667


Q ss_pred             cCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          317 HDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       317 h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      |-..|++.++-|+=++ ..++..|+.|..|..
T Consensus       334 h~k~i~c~~~~~~fq~-~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  334 HLKRINCAAYRPDFEQ-CFTGDMNGNIYMWSP  364 (397)
T ss_pred             ccceeeEEeecCchhh-hhccccCCccccccc
Confidence            8888999999987655 458999999999976

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=2.5e-24  Score=196.36  Aligned_cols=242  Identities=31%  Similarity=0.493  Sum_probs=189.5

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      ...+.||.+.|+++++...      +..+++||.|+++++||..++..    ...+ ..|...|.++...  +..+++|+
T Consensus       242 ~~~l~GH~g~V~~l~~~~~------~~~lvsgS~D~t~rvWd~~sg~C----~~~l-~gh~stv~~~~~~--~~~~~sgs  308 (537)
T KOG0274|consen  242 LTRLVGHFGGVWGLAFPSG------GDKLVSGSTDKTERVWDCSTGEC----THSL-QGHTSSVRCLTID--PFLLVSGS  308 (537)
T ss_pred             EeeccCCCCCceeEEEecC------CCEEEEEecCCcEEeEecCCCcE----EEEe-cCCCceEEEEEcc--CceEeecc
Confidence            3449999999999999753      36899999999999999888753    3333 3588888887654  45778899


Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                      .|.++++|+..++  .++.++.+|.++|+++..+  +.++++|+.|++|++||+.   ..+++..+.+|...|.++.+.+
T Consensus       309 ~D~tVkVW~v~n~--~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~---~~~cl~sl~gH~~~V~sl~~~~  381 (537)
T KOG0274|consen  309 RDNTVKVWDVTNG--ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR---TGKCLKSLSGHTGRVYSLIVDS  381 (537)
T ss_pred             CCceEEEEeccCc--ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh---hceeeeeecCCcceEEEEEecC
Confidence            9999999998866  4577778899999999987  7899999999999999986   3468899999999999998866


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCC
Q 018675          174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG  253 (352)
Q Consensus       174 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  253 (352)
                      . ..+++|+.|+.|++||+....    +|++++    .+|..-+..+.+  .+++|++++.|++|++||.+....     
T Consensus       382 ~-~~~~Sgs~D~~IkvWdl~~~~----~c~~tl----~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~-----  445 (537)
T KOG0274|consen  382 E-NRLLSGSLDTTIKVWDLRTKR----KCIHTL----QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGEC-----  445 (537)
T ss_pred             c-ceEEeeeeccceEeecCCchh----hhhhhh----cCCccccccccc--ccceeEeccccccEEEeecccCce-----
Confidence            5 789999999999999876531    455555    368877766554  577899999999999998754321     


Q ss_pred             CccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccC
Q 018675          254 YASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK  298 (352)
Q Consensus       254 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~  298 (352)
                            ...+.+.+...+..+... +..+++++.++++++|+...
T Consensus       446 ------~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  446 ------LRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRS  483 (537)
T ss_pred             ------eeeeccCCcccEEEeecC-cceEEEEecCCeeEEEeccc
Confidence                  122222233456666554 56889999999999996654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.2e-23  Score=170.10  Aligned_cols=279  Identities=17%  Similarity=0.225  Sum_probs=191.7

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEE
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCI  100 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i  100 (352)
                      .+.|+++.|+|..      ..|+.+|+||++++|+......    .  .+..|..++.+|+|.+ ...+++|+.||.|+.
T Consensus        13 ~d~IS~v~f~~~~------~~LLvssWDgslrlYdv~~~~l----~--~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~   79 (323)
T KOG1036|consen   13 EDGISSVKFSPSS------SDLLVSSWDGSLRLYDVPANSL----K--LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRR   79 (323)
T ss_pred             hhceeeEEEcCcC------CcEEEEeccCcEEEEeccchhh----h--hheecCCceeeeeccC-CceEEEeccCceEEE
Confidence            6789999999863      4667778999999999876521    1  2234889999999997 456789999999999


Q ss_pred             EEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEE
Q 018675          101 WEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS  180 (352)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  180 (352)
                      +|..+++.   ..+..|..+|.|+.+++....+++||+|++|++||.+...   +...+. ....|-+++.  .++.|++
T Consensus        80 ~Dln~~~~---~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~---~~~~~d-~~kkVy~~~v--~g~~LvV  150 (323)
T KOG1036|consen   80 YDLNTGNE---DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV---VVGTFD-QGKKVYCMDV--SGNRLVV  150 (323)
T ss_pred             EEecCCcc---eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc---cccccc-cCceEEEEec--cCCEEEE
Confidence            99887653   3456799999999999988889999999999999986421   111111 1224555444  5678999


Q ss_pred             EeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceee
Q 018675          181 CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHL  260 (352)
Q Consensus       181 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  260 (352)
                      |..++.+.+||++.-+..       +..........+.+|++.|++.-++.++-||+|.+=.++.....+...+.---+.
T Consensus       151 g~~~r~v~iyDLRn~~~~-------~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr  223 (323)
T KOG1036|consen  151 GTSDRKVLIYDLRNLDEP-------FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR  223 (323)
T ss_pred             eecCceEEEEEcccccch-------hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence            999999999998763221       1111223456789999999988899999999988755443211000000000000


Q ss_pred             EEeec-ccCcceEEEEecCC-ceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEec
Q 018675          261 CTISG-YHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS  338 (352)
Q Consensus       261 ~~~~~-~~~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~  338 (352)
                      ....+ ...-+|.+++|+|- +.+++|+.||.|.+|+...        .+. +.++..-...|-.++|+.+|. +||.++
T Consensus       224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~--------rKr-l~q~~~~~~SI~slsfs~dG~-~LAia~  293 (323)
T KOG1036|consen  224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN--------RKR-LKQLAKYETSISSLSFSMDGS-LLAIAS  293 (323)
T ss_pred             cccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc--------hhh-hhhccCCCCceEEEEeccCCC-eEEEEe
Confidence            00000 00124667888885 6899999999999995432        122 223444566799999999997 466554

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=1.5e-24  Score=192.00  Aligned_cols=239  Identities=23%  Similarity=0.387  Sum_probs=190.6

Q ss_pred             eeeecCCccceEE-EEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           14 IQTLEGHTDRVWS-LAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        14 ~~~~~gH~~~V~~-i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      ...+++|.+.|.+ +++-+.+     .-.+.+|+.|.++.+|.......++.    + +.|+..|.+++...++. +++|
T Consensus        50 ~~~~~~~~g~i~~~i~y~e~~-----~~~l~~g~~D~~i~v~~~~~~~P~~~----L-kgH~snVC~ls~~~~~~-~iSg  118 (745)
T KOG0301|consen   50 THAFEGPKGFIANSICYAESD-----KGRLVVGGMDTTIIVFKLSQAEPLYT----L-KGHKSNVCSLSIGEDGT-LISG  118 (745)
T ss_pred             ceecccCcceeeccceecccc-----CcceEeecccceEEEEecCCCCchhh----h-hccccceeeeecCCcCc-eEec
Confidence            3568889998887 8887643     34699999999999999887654332    2 45999999998777777 8999


Q ss_pred             eCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEc
Q 018675           93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH  172 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~  172 (352)
                      |+|.++++|...    ++...+++|+..|+++..-|.+ .++|||.|++|++|.-.     ..+.++.+|..-|+.+++-
T Consensus       119 SWD~TakvW~~~----~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~-----~~l~tf~gHtD~VRgL~vl  188 (745)
T KOG0301|consen  119 SWDSTAKVWRIG----ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG-----TLLKTFSGHTDCVRGLAVL  188 (745)
T ss_pred             ccccceEEecch----hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-----chhhhhccchhheeeeEEe
Confidence            999999999642    3455689999999999998887 78999999999999842     3567899999999999998


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCC
Q 018675          173 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD  252 (352)
Q Consensus       173 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  252 (352)
                      |+. .+++++.||.|+.|++...      ++.+    ..+|++-|++++..+++..++++|+|++++||+.....     
T Consensus       189 ~~~-~flScsNDg~Ir~w~~~ge------~l~~----~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~-----  252 (745)
T KOG0301|consen  189 DDS-HFLSCSNDGSIRLWDLDGE------VLLE----MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECV-----  252 (745)
T ss_pred             cCC-CeEeecCCceEEEEeccCc------eeee----eeccceEEEEEEecCCCCeEEEecCCceEEEeecCceE-----
Confidence            764 4789999999999987432      2222    24899999999988888999999999999999754110     


Q ss_pred             CCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccC
Q 018675          253 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK  298 (352)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~  298 (352)
                            +.  + ......++++..-+++.++.|++||.+++|...+
T Consensus       253 ------q~--I-~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  253 ------QV--I-TLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             ------EE--E-ecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence                  00  0 1123468888888899999999999999997653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=1.4e-24  Score=185.72  Aligned_cols=292  Identities=17%  Similarity=0.304  Sum_probs=216.0

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeec-ceecceEEEEECCCCCEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE-MHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~   90 (352)
                      +.+.+| .|-+-|-+++.+..      ..+++||+ -|.|+|||+...... .+...+.- .-...|++|.+.|||+.|+
T Consensus       411 rq~~tL-~HGEvVcAvtIS~~------trhVyTgG-kgcVKVWdis~pg~k-~PvsqLdcl~rdnyiRSckL~pdgrtLi  481 (705)
T KOG0639|consen  411 RQINTL-AHGEVVCAVTISNP------TRHVYTGG-KGCVKVWDISQPGNK-SPVSQLDCLNRDNYIRSCKLLPDGRTLI  481 (705)
T ss_pred             Hhhhhh-ccCcEEEEEEecCC------cceeEecC-CCeEEEeeccCCCCC-CccccccccCcccceeeeEecCCCceEE
Confidence            334444 47777777777653      36788874 689999998754211 11111111 1246799999999999999


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      +|+.-.++.|||...........+....-...+++.+||.+..++|..||.|.|||+...   ..+..+++|+..+.|+.
T Consensus       482 vGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq---~~VrqfqGhtDGascId  558 (705)
T KOG0639|consen  482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCID  558 (705)
T ss_pred             eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc---eeeecccCCCCCceeEE
Confidence            999999999999865543333334433344567888999999999999999999999643   35678999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          171 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      .++++..|.+|+-|++++.||++..+.        +.+  -...+.|.+|.++|+++.++.|..++.+-+-......   
T Consensus       559 is~dGtklWTGGlDntvRcWDlregrq--------lqq--hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~---  625 (705)
T KOG0639|consen  559 ISKDGTKLWTGGLDNTVRCWDLREGRQ--------LQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE---  625 (705)
T ss_pred             ecCCCceeecCCCccceeehhhhhhhh--------hhh--hhhhhhheecccCCCccceeeecccCcEEEEecCCcc---
Confidence            999999999999999999998776432        111  1245789999999999999999999999887653211   


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCC
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG  329 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~  329 (352)
                                .-...-|+..|.++.|.+-| .+++.+-|+.+..|....        ...+++  ......|+++..|.|
T Consensus       626 ----------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy--------GasiFq--skE~SsVlsCDIS~d  685 (705)
T KOG0639|consen  626 ----------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--------GASIFQ--SKESSSVLSCDISFD  685 (705)
T ss_pred             ----------ceeecccccEEEEEEecccCceeeecCchhhhhhccCcc--------ccceee--ccccCcceeeeeccC
Confidence                      11123478889999999876 678888898888884322        122322  234568999999998


Q ss_pred             CcceEEEecCCCeEEEEeec
Q 018675          330 ERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       330 ~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ++ +++||+.|+...||++.
T Consensus       686 dk-yIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  686 DK-YIVTGSGDKKATVYEVI  704 (705)
T ss_pred             ce-EEEecCCCcceEEEEEe
Confidence            76 78999999999999875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=3.1e-23  Score=187.25  Aligned_cols=315  Identities=18%  Similarity=0.249  Sum_probs=230.2

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecce-ecceEEEEECCCCC-EE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH-TRTVRSCAWSPSGK-LL   89 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~-~l   89 (352)
                      +++.+++++...|+++.-+|-      -+.+|.|-.+|+|.++++..++.+.+.      .| .++|++++|..||+ .+
T Consensus       193 K~v~~f~~~~s~IT~ieqsPa------LDVVaiG~~~G~ViifNlK~dkil~sF------k~d~g~VtslSFrtDG~p~l  260 (910)
T KOG1539|consen  193 KVVYTFQEFFSRITAIEQSPA------LDVVAIGLENGTVIIFNLKFDKILMSF------KQDWGRVTSLSFRTDGNPLL  260 (910)
T ss_pred             cEEEEecccccceeEeccCCc------ceEEEEeccCceEEEEEcccCcEEEEE------EccccceeEEEeccCCCeeE
Confidence            667889999999999988885      478999999999999999877654332      24 38999999999996 56


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe-eEEEEEeecCccCeeE
Q 018675           90 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKM  168 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~h~~~v~~  168 (352)
                      ++|...|.+.+||....+. .......|.+.|....|-|....+++++.|+++++|-...+.. ...++.-.||..+-.+
T Consensus       261 as~~~~G~m~~wDLe~kkl-~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~  339 (910)
T KOG1539|consen  261 ASGRSNGDMAFWDLEKKKL-INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSC  339 (910)
T ss_pred             EeccCCceEEEEEcCCCee-eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchh
Confidence            7777789999999876543 2334457889999999999999999999999999885442221 1234556789999999


Q ss_pred             EEEc-CCCCEEEEEeCCCcEEEEecCCCCC---------------CC------------------------cee------
Q 018675          169 VQWH-PTMDVLFSCSYDNTIKVWWAEDTDS---------------DN------------------------WHC------  202 (352)
Q Consensus       169 ~~~~-~~~~~l~s~~~d~~i~iw~~~~~~~---------------~~------------------------~~~------  202 (352)
                      +.|. .++..+.+++.|++++.+.+.....               .+                        |..      
T Consensus       340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~  419 (910)
T KOG1539|consen  340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHK  419 (910)
T ss_pred             eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEec
Confidence            9997 5778899999999887774321000               00                        000      


Q ss_pred             ----Eeeee--cc-----------CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEe--
Q 018675          203 ----VQTIS--ES-----------NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTI--  263 (352)
Q Consensus       203 ----~~~~~--~~-----------~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--  263 (352)
                          ..+..  ..           .+.-...+.+++.++-|++.+.|...|.|-+|++...           ....++  
T Consensus       420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG-----------i~r~sf~~  488 (910)
T KOG1539|consen  420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG-----------IHRKSFGD  488 (910)
T ss_pred             CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-----------eeeccccc
Confidence                00000  00           0012357888999999999999999999999976422           111222  


Q ss_pred             ecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccC--------------------------------ccccee
Q 018675          264 SGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG--------------------------------PSYKML  310 (352)
Q Consensus       264 ~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~--------------------------------~~~~~~  310 (352)
                      ...|..++..++.+.-+ .+++++.+|.+.+|+.++..+...                                ...+.+
T Consensus       489 ~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv  568 (910)
T KOG1539|consen  489 SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV  568 (910)
T ss_pred             CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence            23578889999887744 789999999999998776442110                                001223


Q ss_pred             eecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       311 ~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      ..++.||+..|++++|||||++ |++++.|++||+||+..+
T Consensus       569 vR~f~gh~nritd~~FS~DgrW-lisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  569 VREFWGHGNRITDMTFSPDGRW-LISASMDSTIRTWDLPTG  608 (910)
T ss_pred             hHHhhccccceeeeEeCCCCcE-EEEeecCCcEEEEeccCc
Confidence            3456799999999999999986 679999999999999764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.6e-24  Score=175.74  Aligned_cols=257  Identities=24%  Similarity=0.378  Sum_probs=197.3

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEe----cCCCce--------------------------
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWE----QSASSR--------------------------   61 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~----~~~~~~--------------------------   61 (352)
                      .++.++.||.+.|+||.|+|.      +.+++|+|.|++..||.    ++.+..                          
T Consensus       181 ~CL~~Y~GH~GSVNsikfh~s------~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~  254 (481)
T KOG0300|consen  181 ACLATYTGHTGSVNSIKFHNS------GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSE  254 (481)
T ss_pred             cceeeecccccceeeEEeccc------cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccc
Confidence            567789999999999999997      57999999999999996    111100                          


Q ss_pred             -----eeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEe
Q 018675           62 -----FWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC  136 (352)
Q Consensus        62 -----~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~  136 (352)
                           ....+..-...|...|.++.|-..|+.++++++|.+..+||.++++  ++..+.||..+.+-++-+|...+++++
T Consensus       255 ~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge--~v~~LtGHd~ELtHcstHptQrLVvTs  332 (481)
T KOG0300|consen  255 KSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE--VVNILTGHDSELTHCSTHPTQRLVVTS  332 (481)
T ss_pred             ccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc--eeccccCcchhccccccCCcceEEEEe
Confidence                 0000000112478889999999999999999999999999999884  577889999999999999999999999


Q ss_pred             eCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCccc
Q 018675          137 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST  216 (352)
Q Consensus       137 ~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~  216 (352)
                      +.|-+.++||.++  ....+..+++|+..|+++.|..+. .+++|+.|++|++|++.+-. .   .+.++.     ..++
T Consensus       333 SrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMR-s---plATIR-----tdS~  400 (481)
T KOG0300|consen  333 SRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMR-S---PLATIR-----TDSP  400 (481)
T ss_pred             ccCceeEeccchh--hcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeecccc-C---cceeee-----cCCc
Confidence            9999999999873  445678899999999999998665 57999999999999886522 1   123332     3467


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc---eEEecCCCCeEEE
Q 018675          217 IWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG---IIASGAADDSVQF  293 (352)
Q Consensus       217 i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~s~~~d~~v~~  293 (352)
                      ++.++.+..+..++---++..|++||++..++....       ... -..|...+.+.+|..+.   -+.+++.|..+.-
T Consensus       401 ~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP-------rts-RqgHrRMV~c~AW~eehp~cnLftcGFDR~v~g  472 (481)
T KOG0300|consen  401 ANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP-------RTS-RQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAG  472 (481)
T ss_pred             cceeEeecCCceEEeccCCceEEEEecCCCccccCC-------ccc-ccccceeeeeeeccccCcccccccccccceeee
Confidence            888999888888888888889999998754432110       000 11366678888888654   5778888888887


Q ss_pred             EEc
Q 018675          294 FVE  296 (352)
Q Consensus       294 ~~~  296 (352)
                      |..
T Consensus       473 W~i  475 (481)
T KOG0300|consen  473 WKI  475 (481)
T ss_pred             eEe
Confidence            743

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.3e-24  Score=182.19  Aligned_cols=240  Identities=19%  Similarity=0.290  Sum_probs=184.6

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC-CEEEEEeCC
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG-KLLATASFD   95 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d   95 (352)
                      +.--.+.|++++|..+      |.+||.|...|.|+++|..+.. +   . .....|+.+|..+.|+|++ +.+++|+.|
T Consensus        64 ~srFk~~v~s~~fR~D------G~LlaaGD~sG~V~vfD~k~r~-i---L-R~~~ah~apv~~~~f~~~d~t~l~s~sDd  132 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSD------GRLLAAGDESGHVKVFDMKSRV-I---L-RQLYAHQAPVHVTKFSPQDNTMLVSGSDD  132 (487)
T ss_pred             HHhhccceeEEEeecC------CeEEEccCCcCcEEEeccccHH-H---H-HHHhhccCceeEEEecccCCeEEEecCCC
Confidence            4446789999999987      6899999999999999955421 1   1 1225699999999999954 678888889


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCC-CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT  174 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (352)
                      +.+++||..+..  ....+.+|+..|+|.+|+|. +..++|||.||+|++||.+...  ..+..+ .|..+|-.+.+-|.
T Consensus       133 ~v~k~~d~s~a~--v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~--~~v~el-nhg~pVe~vl~lps  207 (487)
T KOG0310|consen  133 KVVKYWDLSTAY--VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT--SRVVEL-NHGCPVESVLALPS  207 (487)
T ss_pred             ceEEEEEcCCcE--EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC--ceeEEe-cCCCceeeEEEcCC
Confidence            999999987654  36688999999999999995 4579999999999999997653  223333 47778999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCC
Q 018675          175 MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY  254 (352)
Q Consensus       175 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  254 (352)
                      +..+++++ .+.+++||+.....       .+ .....|...|+||.+..++..|+|++-|+.+++||+..         
T Consensus       208 gs~iasAg-Gn~vkVWDl~~G~q-------ll-~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~---------  269 (487)
T KOG0310|consen  208 GSLIASAG-GNSVKVWDLTTGGQ-------LL-TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN---------  269 (487)
T ss_pred             CCEEEEcC-CCeEEEEEecCCce-------eh-hhhhcccceEEEEEeecCCceEeecccccceEEEEccc---------
Confidence            99888876 56799999764321       11 11223889999999999999999999999999998532         


Q ss_pred             ccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEE
Q 018675          255 ASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFF  294 (352)
Q Consensus       255 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~  294 (352)
                        ++-...+.  ..++|.+++.+|++ .++.|..||.+.+-
T Consensus       270 --~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  270 --YKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             --eEEEEeee--cccceeeEEecCCCceEEEecccceeeee
Confidence              22222221  35678899999865 78889999987654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=6.9e-23  Score=158.91  Aligned_cols=254  Identities=22%  Similarity=0.353  Sum_probs=185.7

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC----CCCEE
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP----SGKLL   89 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~----~~~~l   89 (352)
                      .++-+.|++.|+|.+|+|.      ++++||||+|++|++--.........-...-..+|.+.|+.++|-.    .|.+|
T Consensus        82 ~kr~khhkgsiyc~~ws~~------geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il  155 (350)
T KOG0641|consen   82 CKRNKHHKGSIYCTAWSPC------GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAIL  155 (350)
T ss_pred             eeeccccCccEEEEEecCc------cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEE
Confidence            3456789999999999997      6899999999999997544332211112222256999999999954    24667


Q ss_pred             EEEeC-CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEee----c---
Q 018675           90 ATASF-DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ----G---  161 (352)
Q Consensus        90 ~s~~~-d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~----~---  161 (352)
                      ++++. |.+|.+-|..++  +....+.+|++.|.++- +-++-.|++|+.|.+|++||++-..   ++..+.    +   
T Consensus       156 ~s~gagdc~iy~tdc~~g--~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~---~v~~l~~~~~~~gl  229 (350)
T KOG0641|consen  156 ASAGAGDCKIYITDCGRG--QGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNS---CVNTLDNDFHDGGL  229 (350)
T ss_pred             EecCCCcceEEEeecCCC--CcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccc---eeeeccCcccCCCc
Confidence            76553 666766676555  45677889999998772 3356789999999999999986432   233221    1   


Q ss_pred             CccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          162 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       162 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iw  241 (352)
                      ....|.+++..|.+++|++|..|...-+||++....     ++.+    ..|...|.++.|+|...||++|+-|..|++-
T Consensus       230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~-----iq~f----~phsadir~vrfsp~a~yllt~syd~~iklt  300 (350)
T KOG0641|consen  230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM-----IQRF----HPHSADIRCVRFSPGAHYLLTCSYDMKIKLT  300 (350)
T ss_pred             ccceeEEEEECCCcceeeeccCCCceEEEEeeCCce-----eeee----CCCccceeEEEeCCCceEEEEecccceEEEe
Confidence            125688999999999999999999999999877532     3333    3688999999999999999999999999999


Q ss_pred             cCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEc
Q 018675          242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE  296 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~  296 (352)
                      |+.-.-.     .   .........|......+.|.+.. -+++.+.|.++.+|..
T Consensus       301 dlqgdla-----~---el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  301 DLQGDLA-----H---ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             ecccchh-----h---cCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            8752100     0   00111223466677778899876 5888999999999943

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1e-24  Score=191.79  Aligned_cols=281  Identities=22%  Similarity=0.368  Sum_probs=205.7

Q ss_pred             CccEEEEeeCCCeEEEEecCCCceeeeee-eeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeecc
Q 018675           38 VAPVFASCSGDKTVRIWEQSASSRFWNCK-AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG  116 (352)
Q Consensus        38 ~~~~l~s~s~D~~v~~w~~~~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~  116 (352)
                      .+.+|+|||.||.|++|+........... ....+.|..-|+.+.+.-+|+.|++++.|-+|++|+...+..-+..++..
T Consensus        36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~  115 (735)
T KOG0308|consen   36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT  115 (735)
T ss_pred             CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc
Confidence            35689999999999999876443211111 22235688999999999999999999999999999976554456677889


Q ss_pred             ccCCeeEEEE-CCCCcEEEEeeCCCcEEEEecCCCCe-------eEEEEEee-cCccCeeEEEEcCCCCEEEEEeCCCcE
Q 018675          117 HENEVKSVSW-NASGTLLATCGRDKSVWIWEVMPGNE-------FECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYDNTI  187 (352)
Q Consensus       117 h~~~v~~v~~-~~~~~~l~s~~~d~~v~vwd~~~~~~-------~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i  187 (352)
                      |..-|.|++. .++..++|+||-|+.|.+||+..+..       ......+. ++...+-+++..+.+..+++|+..+.+
T Consensus       116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~l  195 (735)
T KOG0308|consen  116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL  195 (735)
T ss_pred             ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccce
Confidence            9999999999 78889999999999999999975522       11122233 777889999999999999999999999


Q ss_pred             EEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeeccc
Q 018675          188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH  267 (352)
Q Consensus       188 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  267 (352)
                      ++||....     ..+..+    .||+..|..|..++||+.+++++.||+|++||+..++.           +.++ ..|
T Consensus       196 r~wDprt~-----~kimkL----rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC-----------l~T~-~vH  254 (735)
T KOG0308|consen  196 RLWDPRTC-----KKIMKL----RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC-----------LATY-IVH  254 (735)
T ss_pred             EEeccccc-----cceeee----eccccceEEEEEcCCCCeEeecCCCceEEeeeccccce-----------eeeE-Eec
Confidence            99976542     223333    38999999999999999999999999999999864322           1122 236


Q ss_pred             CcceEEEEecCC-ceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEE
Q 018675          268 DRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW  346 (352)
Q Consensus       268 ~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw  346 (352)
                      ...++++..+++ ..+.+|+.|+.|..-+...     .... .++.+.   ..+|..+..+.+...+ -.+..|+.|+-|
T Consensus       255 ~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n-----~~~~-tlick~---daPv~~l~~~~~~~~~-WvtTtds~I~rW  324 (735)
T KOG0308|consen  255 KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN-----PAKS-TLICKE---DAPVLKLHLHEHDNSV-WVTTTDSSIKRW  324 (735)
T ss_pred             cCceEEEeeCCCcceEEecCCCCcEEecccCC-----chhh-eEeecC---CCchhhhhhccccCCc-eeeeccccceec
Confidence            666898888876 4799999999988764332     1111 222222   2245556555333332 456778888888


Q ss_pred             eec
Q 018675          347 ELA  349 (352)
Q Consensus       347 ~~~  349 (352)
                      ...
T Consensus       325 ~~~  327 (735)
T KOG0308|consen  325 KLE  327 (735)
T ss_pred             CCc
Confidence            653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=9.7e-24  Score=186.15  Aligned_cols=239  Identities=26%  Similarity=0.455  Sum_probs=187.0

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEE
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTC   99 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   99 (352)
                      +.+.|+++.|+++      +.+||.|-.+|.|.|||....+..    ......|...|-+++|+  +..+.+|+.|+.|.
T Consensus       216 ~~~~vtSv~ws~~------G~~LavG~~~g~v~iwD~~~~k~~----~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~  283 (484)
T KOG0305|consen  216 GEELVTSVKWSPD------GSHLAVGTSDGTVQIWDVKEQKKT----RTLRGSHASRVGSLAWN--SSVLSSGSRDGKIL  283 (484)
T ss_pred             CCCceEEEEECCC------CCEEEEeecCCeEEEEehhhcccc----ccccCCcCceeEEEecc--CceEEEecCCCcEE
Confidence            3899999999997      679999999999999998765432    11222288899999999  67899999999999


Q ss_pred             EEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC-CCEE
Q 018675          100 IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVL  178 (352)
Q Consensus       100 i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l  178 (352)
                      .+|....+.. ..++.+|...|+.+.|++++.+|++|+.|+.+.|||....   .+...+..|...|..++|+|- ...|
T Consensus       284 ~~dvR~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~---~p~~~~~~H~aAVKA~awcP~q~~lL  359 (484)
T KOG0305|consen  284 NHDVRISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP---EPKFTFTEHTAAVKALAWCPWQSGLL  359 (484)
T ss_pred             EEEEecchhh-hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc---cccEEEeccceeeeEeeeCCCccCce
Confidence            9998765432 2257899999999999999999999999999999998433   335567789999999999995 4577


Q ss_pred             EEEe--CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE--eCCCcEEEEcCCccccccCCCC
Q 018675          179 FSCS--YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC--SDDLTIKIWGADITRMQSGDGY  254 (352)
Q Consensus       179 ~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~  254 (352)
                      |+|+  .|+.|++|+....     ..+..+     .-...|.+|.|++..+.|+++  -.++.|.||+...         
T Consensus       360 AsGGGs~D~~i~fwn~~~g-----~~i~~v-----dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps---------  420 (484)
T KOG0305|consen  360 ATGGGSADRCIKFWNTNTG-----ARIDSV-----DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS---------  420 (484)
T ss_pred             EEcCCCcccEEEEEEcCCC-----cEeccc-----ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc---------
Confidence            7764  6899999987643     222222     235789999999998776653  4678999998642         


Q ss_pred             ccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEc
Q 018675          255 ASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE  296 (352)
Q Consensus       255 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~  296 (352)
                        .+....+. .|...+..++++|++ .+++|+.|.++++|..
T Consensus       421 --~~~~~~l~-gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  421 --MKLVAELL-GHTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             --cceeeeec-CCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence              12233333 366679999999986 8999999999999943

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=6e-25  Score=188.51  Aligned_cols=213  Identities=20%  Similarity=0.366  Sum_probs=156.9

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeee-eeeeeecceecceEEEEECCCCCEEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWN-CKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      .....+||...++|.+|+|..     ...|+|||.|+++|+|+....+.... ++........-++++|+|++||+.||+
T Consensus       260 Dm~nTKGHia~lt~g~whP~~-----k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa  334 (641)
T KOG0772|consen  260 DMYNTKGHIAELTCGCWHPDN-----KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAA  334 (641)
T ss_pred             hhhccCCceeeeeccccccCc-----ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhh
Confidence            344567999999999999975     46899999999999999876542111 111111123357899999999999999


Q ss_pred             EeCCCcEEEEEccCCceee-eEeeccccC--CeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec--CccCe
Q 018675           92 ASFDATTCIWEDVGGDYEC-VATLEGHEN--EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG--HAQDV  166 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~-~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--h~~~v  166 (352)
                      |..||+|.+|+...-...+ ...-++|..  .|+||.|+++|++|++=|.|+++++||++..+  +++....+  ....-
T Consensus       335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k--kpL~~~tgL~t~~~~  412 (641)
T KOG0772|consen  335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK--KPLNVRTGLPTPFPG  412 (641)
T ss_pred             cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc--cchhhhcCCCccCCC
Confidence            9999999999864322222 234467877  89999999999999999999999999997654  33333222  23455


Q ss_pred             eEEEEcCCCCEEEEEeC------CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 018675          167 KMVQWHPTMDVLFSCSY------DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI  240 (352)
Q Consensus       167 ~~~~~~~~~~~l~s~~~------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~i  240 (352)
                      +.++|+|+.+++++|..      .+.+.+|+..     ++...+.+..    -+..|-.+.|+|.-+.++.|+.||++++
T Consensus       413 tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~-----t~d~v~ki~i----~~aSvv~~~WhpkLNQi~~gsgdG~~~v  483 (641)
T KOG0772|consen  413 TDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM-----TLDTVYKIDI----STASVVRCLWHPKLNQIFAGSGDGTAHV  483 (641)
T ss_pred             CccccCCCceEEEecccccCCCCCceEEEEecc-----ceeeEEEecC----CCceEEEEeecchhhheeeecCCCceEE
Confidence            77899999999998753      3568888432     3344444432    2466888999999888888888999988


Q ss_pred             E
Q 018675          241 W  241 (352)
Q Consensus       241 w  241 (352)
                      +
T Consensus       484 y  484 (641)
T KOG0772|consen  484 Y  484 (641)
T ss_pred             E
Confidence            7

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.6e-25  Score=197.50  Aligned_cols=236  Identities=19%  Similarity=0.394  Sum_probs=175.9

Q ss_pred             EEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC-CCEEEEEeCCCcEEEEEcc
Q 018675           26 SLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS-GKLLATASFDATTCIWEDV  104 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~i~~~~  104 (352)
                      .+.|...+     .+++|||+..|.|.+||+...... +.. .....|++.|+++.|++. ..+|++|+.||+|++||..
T Consensus        92 DVkW~~~~-----~NlIAT~s~nG~i~vWdlnk~~rn-k~l-~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR  164 (839)
T KOG0269|consen   92 DVKWGQLY-----SNLIATCSTNGVISVWDLNKSIRN-KLL-TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR  164 (839)
T ss_pred             hcccccch-----hhhheeecCCCcEEEEecCccccc-hhh-hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence            45565332     478999999999999999763111 011 122459999999999885 5789999999999999987


Q ss_pred             CCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC
Q 018675          105 GGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY  183 (352)
Q Consensus       105 ~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  183 (352)
                      ..+.  ..+..+..+.|+.|.|+| .++.|+++.+.|.+.+||++...  .+...+.+|.+.|.|+.|+|+..+||+||.
T Consensus       165 ~~~S--~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~--r~~~k~~AH~GpV~c~nwhPnr~~lATGGR  240 (839)
T KOG0269|consen  165 SKKS--KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD--RCEKKLTAHNGPVLCLNWHPNREWLATGGR  240 (839)
T ss_pred             cccc--cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch--hHHHHhhcccCceEEEeecCCCceeeecCC
Confidence            6542  345556778999999998 57789999999999999998654  345567899999999999999999999999


Q ss_pred             CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE-EEEEe--CCCcEEEEcCCccccccCCCCccceee
Q 018675          184 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK-LVSCS--DDLTIKIWGADITRMQSGDGYASWRHL  260 (352)
Q Consensus       184 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~-l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~  260 (352)
                      |+.|+||++.+.......++.+        ..+|..|.|.|...+ |++|+  .|-.|+|||++.+..          +-
T Consensus       241 DK~vkiWd~t~~~~~~~~tInT--------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI----------P~  302 (839)
T KOG0269|consen  241 DKMVKIWDMTDSRAKPKHTINT--------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI----------PY  302 (839)
T ss_pred             CccEEEEeccCCCccceeEEee--------cceeeeeeeccCccchhhhhhccccceEEEEeeccccc----------cc
Confidence            9999999988755544444433        368999999998765 56655  578999999864322          11


Q ss_pred             EEeecccCcceEEEEecCC--ceEEecCCCCeE
Q 018675          261 CTISGYHDRTIFSVHWSRE--GIIASGAADDSV  291 (352)
Q Consensus       261 ~~~~~~~~~~i~~~~~~~~--~~~~s~~~d~~v  291 (352)
                      ..+ ..|...+..++|...  ..+.+++-|+++
T Consensus       303 ~t~-~eH~~~vt~i~W~~~d~~~l~s~sKD~tv  334 (839)
T KOG0269|consen  303 ATF-LEHTDSVTGIAWDSGDRINLWSCSKDGTV  334 (839)
T ss_pred             eee-eccCccccceeccCCCceeeEeecCccHH
Confidence            222 236677778888763  245566656554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=3.5e-23  Score=163.63  Aligned_cols=234  Identities=26%  Similarity=0.413  Sum_probs=178.1

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      .+.||.+.|-.++|+|..     +++|++++.|+++++|+....+...    .+.  .++.=.-+.|+|+|.+++.++.|
T Consensus        59 ~~~gh~~svdql~w~~~~-----~d~~atas~dk~ir~wd~r~~k~~~----~i~--~~~eni~i~wsp~g~~~~~~~kd  127 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDPKH-----PDLFATASGDKTIRIWDIRSGKCTA----RIE--TKGENINITWSPDGEYIAVGNKD  127 (313)
T ss_pred             cccCCCcchhhheeCCCC-----CcceEEecCCceEEEEEeccCcEEE----Eee--ccCcceEEEEcCCCCEEEEecCc
Confidence            467999999999999975     5799999999999999988765322    221  12233456899999999999999


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCC
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM  175 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  175 (352)
                      ..|...|..+...  . .-....-.++.++|+.++++|+....-|+|.|..-   +..+++..+++|..++.|+.|+|++
T Consensus       128 D~it~id~r~~~~--~-~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy---psLkpv~si~AH~snCicI~f~p~G  201 (313)
T KOG1407|consen  128 DRITFIDARTYKI--V-NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSY---PSLKPVQSIKAHPSNCICIEFDPDG  201 (313)
T ss_pred             ccEEEEEecccce--e-ehhcccceeeeeeecCCCCEEEEecCCceEEEEec---cccccccccccCCcceEEEEECCCC
Confidence            9999998765432  2 22234457888999988888777777799988664   3566788899999999999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCc
Q 018675          176 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA  255 (352)
Q Consensus       176 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  255 (352)
                      +++++|+.|..+.+||+.+     ..|...+.    .+.-+|..|.|+.+|++||++++|..|-|=.++...       .
T Consensus       202 ryfA~GsADAlvSLWD~~E-----LiC~R~is----RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd-------~  265 (313)
T KOG1407|consen  202 RYFATGSADALVSLWDVDE-----LICERCIS----RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD-------R  265 (313)
T ss_pred             ceEeeccccceeeccChhH-----hhhheeec----cccCceEEEEeccCcceeeccCccceEEeEecccCC-------e
Confidence            9999999999999997654     34544443    467899999999999999999999988877654321       1


Q ss_pred             cceeeEEeecccCcceEEEEecCCce-EEecCCC
Q 018675          256 SWRHLCTISGYHDRTIFSVHWSREGI-IASGAAD  288 (352)
Q Consensus       256 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~s~~~d  288 (352)
                      .|    .  ..+..+.++++|.|... ||-++.|
T Consensus       266 ~~----e--I~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  266 VW----E--IPCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             EE----E--eeccCCceeEEecCCCceeeEEecC
Confidence            11    1  12466788999999874 4444443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=6.7e-24  Score=186.73  Aligned_cols=211  Identities=24%  Similarity=0.413  Sum_probs=175.4

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEE-CCCCCEEEEE
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAW-SPSGKLLATA   92 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~   92 (352)
                      +.+++.|++.|+.+..+-.      ++-|+|||.|-+|++|+.....  .-|...+ ..|...|.|++. .++...+|+|
T Consensus        66 ~asme~HsDWVNDiiL~~~------~~tlIS~SsDtTVK~W~~~~~~--~~c~sti-r~H~DYVkcla~~ak~~~lvaSg  136 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGN------GKTLISASSDTTVKVWNAHKDN--TFCMSTI-RTHKDYVKCLAYIAKNNELVASG  136 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcC------CCceEEecCCceEEEeecccCc--chhHhhh-hcccchheeeeecccCceeEEec
Confidence            5677889999999988765      4689999999999999987653  1233334 459999999999 7888999999


Q ss_pred             eCCCcEEEEEccCCcee--------eeEeec-cccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCc
Q 018675           93 SFDATTCIWEDVGGDYE--------CVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA  163 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~--------~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~  163 (352)
                      |.|+.|.+||...+...        ....+. ++...|.+++-++.|..|++|+..+-+++||-+...   .+..+.+|.
T Consensus       137 GLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~---kimkLrGHT  213 (735)
T KOG0308|consen  137 GLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK---KIMKLRGHT  213 (735)
T ss_pred             CCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc---ceeeeeccc
Confidence            99999999998755321        122233 788889999999999999999999999999976543   356678999


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          164 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       164 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      .+|+++-.+++|..++++|.||+|++|++..     .+|+.++.    .|...||++..+|+-..+.+|+.||.|..=|+
T Consensus       214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-----QrCl~T~~----vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl  284 (735)
T KOG0308|consen  214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-----QRCLATYI----VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL  284 (735)
T ss_pred             cceEEEEEcCCCCeEeecCCCceEEeeeccc-----cceeeeEE----eccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence            9999999999999999999999999997754     35666654    68888999999999999999999999998887


Q ss_pred             Cc
Q 018675          244 DI  245 (352)
Q Consensus       244 ~~  245 (352)
                      +.
T Consensus       285 ~n  286 (735)
T KOG0308|consen  285 RN  286 (735)
T ss_pred             CC
Confidence            54

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=8e-23  Score=164.76  Aligned_cols=249  Identities=22%  Similarity=0.378  Sum_probs=166.5

Q ss_pred             eecceEEEEECC-CCCEEEEEeCCCcEEEEEccCC-ceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCC
Q 018675           73 HTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGG-DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG  150 (352)
Q Consensus        73 h~~~v~~~~~s~-~~~~l~s~~~d~~i~i~~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~  150 (352)
                      -++.|.+++||| ...+++.+++|+++++|+.... ...+ .....|+++|.+++|+.+|..+++|+-|+.+++||+..+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            356899999999 4566779999999999998763 3322 456679999999999999999999999999999999876


Q ss_pred             CeeEEEEEeecCccCeeEEEEcCCCC--EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE
Q 018675          151 NEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK  228 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~  228 (352)
                      +    ......|..+|..+.|-+...  .|++||.|.+|++||.+...     .+.++.     ....+++++.  ...+
T Consensus       105 Q----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-----pv~t~~-----LPeRvYa~Dv--~~pm  168 (347)
T KOG0647|consen  105 Q----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-----PVATLQ-----LPERVYAADV--LYPM  168 (347)
T ss_pred             C----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC-----eeeeee-----ccceeeehhc--cCce
Confidence            4    344567999999999987654  89999999999999876432     122221     2345666554  3557


Q ss_pred             EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCC-ceEEecCCCCeEEEEEccCCccccCccc
Q 018675          229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSY  307 (352)
Q Consensus       229 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~~~~  307 (352)
                      ++.+..++.|.+|.++....+..       .+   .+...-.+.+++.-++ ...+.|+-.|.+.+.-.......+.-..
T Consensus       169 ~vVata~r~i~vynL~n~~te~k-------~~---~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF  238 (347)
T KOG0647|consen  169 AVVATAERHIAVYNLENPPTEFK-------RI---ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF  238 (347)
T ss_pred             eEEEecCCcEEEEEcCCCcchhh-------hh---cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeE
Confidence            88889999999998853211000       00   0000112333433332 2347788888777653322111110001


Q ss_pred             ceeeec--ccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          308 KMLLKK--EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       308 ~~~~~~--~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      +....+  ...--..|++++|+|.- ..|+|+|.||+...||-.
T Consensus       239 kCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  239 KCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             EEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecch
Confidence            110000  01113578999999965 468999999999999853

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=1.1e-24  Score=182.17  Aligned_cols=246  Identities=21%  Similarity=0.320  Sum_probs=191.2

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCC
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG  150 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~  150 (352)
                      ..|.+.+..+.|-++...|++|+.|..|++|+....+...+.++.+..+.|+++.|.+++.++++++.|+.+++|++...
T Consensus       172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~  251 (459)
T KOG0288|consen  172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL  251 (459)
T ss_pred             hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence            45889999999999989999999999999999887766677888898999999999999999999999999999998654


Q ss_pred             CeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE
Q 018675          151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV  230 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  230 (352)
                         ...+++.+|+..|+++.|......+++|+.|++|+.||+..     .+|..++..     .+.++.|..+  ...++
T Consensus       252 ---r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-----~~C~kt~l~-----~S~cnDI~~~--~~~~~  316 (459)
T KOG0288|consen  252 ---RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-----AYCSKTVLP-----GSQCNDIVCS--ISDVI  316 (459)
T ss_pred             ---hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-----hheeccccc-----cccccceEec--ceeee
Confidence               34677889999999999988777799999999999997654     356655532     3456666665  45688


Q ss_pred             EEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccce
Q 018675          231 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM  309 (352)
Q Consensus       231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~  309 (352)
                      ||-.|++||+||.+.....             ......+.+.++..+.++ .+.+++.|.++.+++.....+....    
T Consensus       317 SgH~DkkvRfwD~Rs~~~~-------------~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~----  379 (459)
T KOG0288|consen  317 SGHFDKKVRFWDIRSADKT-------------RSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF----  379 (459)
T ss_pred             ecccccceEEEeccCCcee-------------eEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe----
Confidence            8889999999997643211             111123468888888877 5777799999999876543322110    


Q ss_pred             eeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       310 ~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                       ......-...++.+.|||++. ++++||.||.|+||++..
T Consensus       380 -sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~t  418 (459)
T KOG0288|consen  380 -SAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFT  418 (459)
T ss_pred             -eccccccccccceeEECCCCc-eeeeccCCCcEEEEEccC
Confidence             011111233599999999987 678999999999999864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=7e-22  Score=160.49  Aligned_cols=246  Identities=17%  Similarity=0.292  Sum_probs=173.9

Q ss_pred             eecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC--CCcEEEEecCCC
Q 018675           73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR--DKSVWIWEVMPG  150 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--d~~v~vwd~~~~  150 (352)
                      ....|+++.|+++|..+++++.|.+++|||...+.  ++.++..+.-.|..++|-...+.++.++.  |.+|+.-++...
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~--~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN   90 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK--QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN   90 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc--eeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence            35689999999999999999999999999988774  45566666678888999665566665655  889999998644


Q ss_pred             CeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE
Q 018675          151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV  230 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  230 (352)
                         +.++.+.||...|+.+..+|-++.+++++.|++|++||++...     |...+.      ...-...+|+|+|-++|
T Consensus        91 ---kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-----cqg~l~------~~~~pi~AfDp~GLifA  156 (311)
T KOG1446|consen   91 ---KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-----CQGLLN------LSGRPIAAFDPEGLIFA  156 (311)
T ss_pred             ---ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-----CceEEe------cCCCcceeECCCCcEEE
Confidence               4678899999999999999999999999999999999887432     222221      11122468999999999


Q ss_pred             EEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccce
Q 018675          231 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM  309 (352)
Q Consensus       231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~  309 (352)
                      ++...+.|++||++...-   .+.    ....+..........+.|+++| +++.....+.+++.+.-.+.+        
T Consensus       157 ~~~~~~~IkLyD~Rs~dk---gPF----~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~--------  221 (311)
T KOG1446|consen  157 LANGSELIKLYDLRSFDK---GPF----TTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV--------  221 (311)
T ss_pred             EecCCCeEEEEEecccCC---CCc----eeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE--------
Confidence            998888999999874311   000    0011111123345678889987 445555556666664432221        


Q ss_pred             eeecccccC--cc-eeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          310 LLKKEKAHD--MD-VNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       310 ~~~~~~~h~--~~-i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                       +....++.  .. -....|+||++ ++.+|+.||+|.+|+++.+
T Consensus       222 -~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  222 -KSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETG  264 (311)
T ss_pred             -eeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCC
Confidence             22222221  11 14678999986 6779999999999998764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3e-22  Score=169.91  Aligned_cols=310  Identities=13%  Similarity=0.267  Sum_probs=211.0

Q ss_pred             Cccceeeeeeec-C--CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEEC
Q 018675            7 GNYELREIQTLE-G--HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWS   83 (352)
Q Consensus         7 ~~~~~~~~~~~~-g--H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s   83 (352)
                      +.+.+..++.+. +  -...|++|.|||.      .+++++|+.|++++||.++..... .....  ..-.-+|.++.|.
T Consensus       196 ~tl~~krlkDaNa~~ps~~~I~sv~FHp~------~plllvaG~d~~lrifqvDGk~N~-~lqS~--~l~~fPi~~a~f~  266 (514)
T KOG2055|consen  196 GTLNIKRLKDANAAHPSHGGITSVQFHPT------APLLLVAGLDGTLRIFQVDGKVNP-KLQSI--HLEKFPIQKAEFA  266 (514)
T ss_pred             ceeeeEeecccccCCcCcCCceEEEecCC------CceEEEecCCCcEEEEEecCccCh-hheee--eeccCccceeeec
Confidence            334444444443 2  3468999999997      489999999999999988754321 11111  1234689999999


Q ss_pred             CCCC-EEEEEeCCCcEEEEEccCCceeeeEeeccccC-CeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec
Q 018675           84 PSGK-LLATASFDATTCIWEDVGGDYECVATLEGHEN-EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG  161 (352)
Q Consensus        84 ~~~~-~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  161 (352)
                      |+|. .+++++--.....||..+.+...+..+.++.. .+..+..++++++|+..|..|.|.+--..++.   .+..++ 
T Consensus       267 p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e---li~s~K-  342 (514)
T KOG2055|consen  267 PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE---LITSFK-  342 (514)
T ss_pred             CCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh---hhheee-
Confidence            9998 88888888899999998876666665666653 46678889999999999999999987654432   222222 


Q ss_pred             CccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          162 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       162 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iw  241 (352)
                      -...+..+.|+.+++.|++.+.+|.|.+|+++..     .+++.....-.-|   -++++.++++.|||+|+..|.|.||
T Consensus       343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-----~~~~rf~D~G~v~---gts~~~S~ng~ylA~GS~~GiVNIY  414 (514)
T KOG2055|consen  343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-----SCLHRFVDDGSVH---GTSLCISLNGSYLATGSDSGIVNIY  414 (514)
T ss_pred             eccEEeeEEEecCCcEEEEEcCCceEEEEecCCc-----ceEEEEeecCccc---eeeeeecCCCceEEeccCcceEEEe
Confidence            2346888999999999999999999999988653     3444443222222   2467888999999999999999999


Q ss_pred             cCCccccccCCCCccceeeEEeecccCcceEEEEecCCce-EEecCC--CCeEEEEEccCCccccCcccceeeecccccC
Q 018675          242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAA--DDSVQFFVESKDDLIDGPSYKMLLKKEKAHD  318 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~s~~~--d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~  318 (352)
                      |.+... .+.    ..+++..+.. ....|.++.|+++.. ++.++.  +..+++.......++..  +... .+..   
T Consensus       415 d~~s~~-~s~----~PkPik~~dN-Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsN--fP~~-n~~v---  482 (514)
T KOG2055|consen  415 DGNSCF-AST----NPKPIKTVDN-LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSN--FPTS-NTKV---  482 (514)
T ss_pred             ccchhh-ccC----CCCchhhhhh-hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeecc--CCCC-CCcc---
Confidence            864221 111    1122222221 234578889998874 444433  45677654433333221  1111 1122   


Q ss_pred             cceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          319 MDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       319 ~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +.|++++|||.+. +||-|-++|.+.+|.+..
T Consensus       483 g~vtc~aFSP~sG-~lAvGNe~grv~l~kL~h  513 (514)
T KOG2055|consen  483 GHVTCMAFSPNSG-YLAVGNEAGRVHLFKLHH  513 (514)
T ss_pred             cceEEEEecCCCc-eEEeecCCCceeeEeecc
Confidence            4599999999876 688999999999999853

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=9.2e-23  Score=172.84  Aligned_cols=316  Identities=18%  Similarity=0.245  Sum_probs=208.9

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC-CEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG-KLLA   90 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~   90 (352)
                      .....++-|..+|++++|+|..+    .+++|.|..-|+|-+||+.+..+-.. ...+...|..+|.++.|+|.. ..+.
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~----~~lva~GdK~G~VG~Wn~~~~~~d~d-~v~~f~~hs~~Vs~l~F~P~n~s~i~  251 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTEN----RKLVAVGDKGGQVGLWNFGTQEKDKD-GVYLFTPHSGPVSGLKFSPANTSQIY  251 (498)
T ss_pred             eecceeEecccceEEEEecccCc----ceEEEEccCCCcEEEEecCCCCCccC-ceEEeccCCccccceEecCCChhhee
Confidence            34456677999999999999864    47899999999999999964332111 112234588999999999954 6788


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      +.+.||+|++-|..+...+.+..+..-......+.|+.+...++.+..=|...+||++..+.  ....+.-|...|++++
T Consensus       252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s--~~~~~~lh~kKI~sv~  329 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS--EYENLRLHKKKITSVA  329 (498)
T ss_pred             eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc--cchhhhhhhcccceee
Confidence            89999999999987765544444443334556777777666666776667889999976553  1233445777999999


Q ss_pred             EcCCCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccc
Q 018675          171 WHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ  249 (352)
Q Consensus       171 ~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  249 (352)
                      ++|... +++++|.|++.+|||++.-....--.+.     ...|...|.+..|||++..|++.+.|.+|+|||..-  ..
T Consensus       330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls-----t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~--~s  402 (498)
T KOG4328|consen  330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS-----TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC--IS  402 (498)
T ss_pred             cCCCCchheeecccCcceeeeehhhhcCCCCccee-----cccccceeeeeEEcCCCCceEeeccCCceEEeeccc--cc
Confidence            999654 6899999999999998764322110122     236899999999999988899999999999998631  00


Q ss_pred             cCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEE-Eec
Q 018675          250 SGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV-QWS  327 (352)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~-~~s  327 (352)
                      ...............+.+ -+.+...|.|+. +++.|-.-..|-+++.+.+.        ++.+....-...|.++ +|+
T Consensus       403 a~~~p~~~I~Hn~~t~Rw-lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q--------~v~el~~P~~~tI~~vn~~H  473 (498)
T KOG4328|consen  403 AKDEPLGTIPHNNRTGRW-LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ--------MVCELHDPESSTIPSVNEFH  473 (498)
T ss_pred             ccCCccceeeccCccccc-ccchhheeCCCccEEEEeccCcceeEEcCCCCE--------EeeeccCccccccccceeec
Confidence            000000001111111111 134556788865 66677666777777554332        1111122223345554 689


Q ss_pred             CCCcceEEEecCCCeEEEEeecc
Q 018675          328 PGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       328 p~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      |-+..+++-++..|.|.||.-..
T Consensus       474 P~~~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  474 PMRDTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             ccccceeccCCccceEEEEecCC
Confidence            97654666666778888886543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=1.1e-22  Score=178.90  Aligned_cols=302  Identities=20%  Similarity=0.296  Sum_probs=198.3

Q ss_pred             EEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeee--ecceecceEEEEECCCCCEEEEEeCCCcEEEEEcc
Q 018675           27 LAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL--EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDV  104 (352)
Q Consensus        27 i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  104 (352)
                      ..|++..+   ....||-+-.||.|.++|.....-. ..+..+  -..|...|..+.|-|....|++++.|.++++||..
T Consensus        55 ~sFs~~~n---~eHiLavadE~G~i~l~dt~~~~fr-~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk  130 (720)
T KOG0321|consen   55 DSFSAAPN---KEHILAVADEDGGIILFDTKSIVFR-LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK  130 (720)
T ss_pred             ccccCCCC---ccceEEEecCCCceeeecchhhhcc-hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec
Confidence            55655432   2467899999999999987543211 011111  13588999999999955679999999999999998


Q ss_pred             CCceeeeEeeccccCCeeEEEECCC-CcEEEEeeCCCcEEEEecCCCC--------------------ee----EEEEEe
Q 018675          105 GGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGN--------------------EF----ECVSVL  159 (352)
Q Consensus       105 ~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~vwd~~~~~--------------------~~----~~~~~~  159 (352)
                      +++..-.....+|.+.|.+++|.|. ...|++|+.||.+.|||++-..                    ..    +.+...
T Consensus       131 ~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~  210 (720)
T KOG0321|consen  131 TSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW  210 (720)
T ss_pred             cceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence            7765444447899999999999985 4579999999999999985221                    00    011122


Q ss_pred             ecCccCeeE---EEEcCCCCEEEEEeC-CCcEEEEecCCCCCCCceeEeeee-ccCCCC---cccEEEEEEcCCCCEEEE
Q 018675          160 QGHAQDVKM---VQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTIS-ESNNGH---SSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       160 ~~h~~~v~~---~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~h---~~~i~~l~~~~~~~~l~s  231 (352)
                      .++...|.+   +-+..|+..|++++. |+.|++||++..... +. ..... ....-|   .-.+.+|.....|.+|.+
T Consensus       211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~-~r-~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A  288 (720)
T KOG0321|consen  211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA-YR-QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA  288 (720)
T ss_pred             ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc-cc-cCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence            234434444   455578888999888 999999998753211 00 00000 000011   235667888888999888


Q ss_pred             EeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceE-EEEecC-CceEEecCCCCeEEEEEccCCccccCcccce
Q 018675          232 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIF-SVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKM  309 (352)
Q Consensus       232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~-~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~  309 (352)
                      .+.|+.|.+|++......         +...+.+.....++ .-..++ +.++++|+.|...++|..+.-.        .
T Consensus       289 sCtD~sIy~ynm~s~s~s---------P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--------~  351 (720)
T KOG0321|consen  289 SCTDNSIYFYNMRSLSIS---------PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--------A  351 (720)
T ss_pred             EecCCcEEEEeccccCcC---------chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--------C
Confidence            888999999987532211         01111111111111 112234 4589999999999999654311        1


Q ss_pred             eeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       310 ~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      ....+.+|...|++++|.|....-++|+++|-+++||++.+.
T Consensus       352 ~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  352 PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            122357999999999998765444789999999999999664

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.91  E-value=7.7e-23  Score=163.93  Aligned_cols=286  Identities=23%  Similarity=0.417  Sum_probs=191.8

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEeeCC-------CeEEEEecCCCcee-----eeeeeeeecceecceEEEEE
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGD-------KTVRIWEQSASSRF-----WNCKAVLEEMHTRTVRSCAW   82 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D-------~~v~~w~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~   82 (352)
                      +.|..|.+.|+.++-+|.+     ...|+|+-+|       ....||.+..+...     +.+...+...+-+.|.|+.|
T Consensus        57 kvf~h~agEvw~las~P~d-----~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew  131 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFD-----QRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW  131 (370)
T ss_pred             hhhhcCCcceehhhcCCCC-----CceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE
Confidence            4567899999999999976     4678888654       34778987654321     11112222234468999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccCCceeeeEee-----ccccCCeeEEEECC--CCcEEEEeeCCCcEEEEecCCCCeeEE
Q 018675           83 SPSGKLLATASFDATTCIWEDVGGDYECVATL-----EGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFEC  155 (352)
Q Consensus        83 s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~-----~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~vwd~~~~~~~~~  155 (352)
                      .|++..+++.. |+.|.+|+...+... ++.+     .++....++-+|+|  +++.+++.+ |+++..||++.....  
T Consensus       132 ~Pns~klasm~-dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~--  206 (370)
T KOG1007|consen  132 EPNSDKLASMD-DNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKN--  206 (370)
T ss_pred             cCCCCeeEEec-cCceEEEEcccCcch-heeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhh--
Confidence            99999988765 899999998665431 2222     23455677888998  677877654 689999999865432  


Q ss_pred             EEEeecCccCeeEEEEcCCCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC-CCEEEEEe
Q 018675          156 VSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCS  233 (352)
Q Consensus       156 ~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~~  233 (352)
                      ...-.+|...+..++|.|+.+ +|++++.|+.|+|||.+.+..    .+    ....+|..+|+++.|+|. .+++++||
T Consensus       207 ~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~----pv----~el~~HsHWvW~VRfn~~hdqLiLs~~  278 (370)
T KOG1007|consen  207 NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF----PV----QELPGHSHWVWAVRFNPEHDQLILSGG  278 (370)
T ss_pred             cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc----cc----cccCCCceEEEEEEecCccceEEEecC
Confidence            233457888899999999865 688999999999998766431    12    234589999999999996 45677999


Q ss_pred             CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeec
Q 018675          234 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK  313 (352)
Q Consensus       234 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~  313 (352)
                      .|..|.+|-....  .++                 .   .+.+..+.   +-..+..      .  .....+.....+++
T Consensus       279 SDs~V~Lsca~sv--SSE-----------------~---qi~~~~de---se~e~~d------s--eer~kpL~dg~l~t  325 (370)
T KOG1007|consen  279 SDSAVNLSCASSV--SSE-----------------Q---QIEFEDDE---SESEDED------S--EERVKPLQDGQLET  325 (370)
T ss_pred             CCceeEEEecccc--ccc-----------------c---cccccccc---ccCcchh------h--HHhccccccccccc
Confidence            9999999943210  000                 0   00000000   0000000      0  00001122233456


Q ss_pred             ccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       314 ~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      +..|...|++++||..++++|||-++||.+.|=.+.+.
T Consensus       326 ydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  326 YDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             ccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence            67899999999999999999999999999998777553

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=1.2e-23  Score=174.22  Aligned_cols=224  Identities=25%  Similarity=0.460  Sum_probs=168.2

Q ss_pred             ceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC-CE
Q 018675           10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG-KL   88 (352)
Q Consensus        10 ~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~   88 (352)
                      ..+++.++.||.+.-++++|+|..     ...|+||---+.+++|...++.  |+....-...|+.+|-.++|||.. ..
T Consensus       200 ~~~Pl~t~~ghk~EGy~LdWSp~~-----~g~LlsGDc~~~I~lw~~~~g~--W~vd~~Pf~gH~~SVEDLqWSptE~~v  272 (440)
T KOG0302|consen  200 EFRPLFTFNGHKGEGYGLDWSPIK-----TGRLLSGDCVKGIHLWEPSTGS--WKVDQRPFTGHTKSVEDLQWSPTEDGV  272 (440)
T ss_pred             ccCceEEecccCccceeeeccccc-----ccccccCccccceEeeeeccCc--eeecCccccccccchhhhccCCccCce
Confidence            357889999999999999999953     2357777666889999887643  444332224499999999999965 68


Q ss_pred             EEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeE
Q 018675           89 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM  168 (352)
Q Consensus        89 l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~  168 (352)
                      +++|+.|++|+|||.+.++...-...+.|.+.|+.|+|+..-.+|++|++||+++|||++.-+..+++..++-|..+|++
T Consensus       273 faScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIts  352 (440)
T KOG0302|consen  273 FASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITS  352 (440)
T ss_pred             EEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeE
Confidence            99999999999999987744433344899999999999988779999999999999999877766788899999999999


Q ss_pred             EEEcCCC-CEEEEEeCCCcEEEEecCCCCC------CCceeEeeee-ccCCCC--cccEEEEEEcCC-CCEEEEEeCCCc
Q 018675          169 VQWHPTM-DVLFSCSYDNTIKVWWAEDTDS------DNWHCVQTIS-ESNNGH--SSTIWALSFNAK-GDKLVSCSDDLT  237 (352)
Q Consensus       169 ~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~------~~~~~~~~~~-~~~~~h--~~~i~~l~~~~~-~~~l~s~~~dg~  237 (352)
                      +.|+|.. ..+++++.|..|.+||+.-...      .....++.+. +.+.-|  +..+..|.|++. -.++++.+.|| 
T Consensus       353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-  431 (440)
T KOG0302|consen  353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-  431 (440)
T ss_pred             EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-
Confidence            9999965 4678889999999998743211      0000111111 001123  356778899986 34677777777 


Q ss_pred             EEEE
Q 018675          238 IKIW  241 (352)
Q Consensus       238 i~iw  241 (352)
                      +.||
T Consensus       432 fnVf  435 (440)
T KOG0302|consen  432 FNVF  435 (440)
T ss_pred             eeEE
Confidence            4444

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=7.4e-21  Score=163.23  Aligned_cols=283  Identities=19%  Similarity=0.377  Sum_probs=207.1

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcE
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATT   98 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   98 (352)
                      .-.+.|....|+|.+     ..+++|++ -+.+.+|++..+. +.+...++++..++.|.|++|.++|+ +++|..+|.|
T Consensus       198 ~sne~v~~a~FHPtd-----~nliit~G-k~H~~Fw~~~~~~-l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i  269 (626)
T KOG2106|consen  198 TSNEVVFLATFHPTD-----PNLIITCG-KGHLYFWTLRGGS-LVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNI  269 (626)
T ss_pred             eccceEEEEEeccCC-----CcEEEEeC-CceEEEEEccCCc-eEEEeeccccccceEEEEEEEcCCCC-EEeecCCceE
Confidence            345678889999986     46777775 6899999987654 23334445444457899999999988 4689999999


Q ss_pred             EEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE------------------------
Q 018675           99 CIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE------------------------  154 (352)
Q Consensus        99 ~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~------------------------  154 (352)
                      .||+..+...  ......|++.|.+++.-.+|.+| +|+.|+.|..||-. .+...                        
T Consensus       270 ~Iw~~~~~~~--~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vG  345 (626)
T KOG2106|consen  270 LIWSKGTNRI--SKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVG  345 (626)
T ss_pred             EEEeCCCceE--EeEeeecCCceEEEEEecCccEe-ecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEe
Confidence            9998755433  23333899999999998888765 59999999999831 10000                        


Q ss_pred             -----E---------EEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEE
Q 018675          155 -----C---------VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWAL  220 (352)
Q Consensus       155 -----~---------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l  220 (352)
                           .         -....+|..+.+.++.+|+.+.+++++.|+.+++|+  + ....|..         ....++.++
T Consensus       346 TtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~-~k~~wt~---------~~~d~~~~~  413 (626)
T KOG2106|consen  346 TTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--D-HKLEWTK---------IIEDPAECA  413 (626)
T ss_pred             eccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--C-CceeEEE---------EecCceeEe
Confidence                 0         012346888888999999999999999999999996  1 1111211         124678899


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCC
Q 018675          221 SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKD  299 (352)
Q Consensus       221 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~  299 (352)
                      .|+|.| .+|.|...|...+.|.+...+.            .+.. ...++..+.++|+| ++|.|+.|+.+++|-.+..
T Consensus       414 ~fhpsg-~va~Gt~~G~w~V~d~e~~~lv------------~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  414 DFHPSG-VVAVGTATGRWFVLDTETQDLV------------TIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             eccCcc-eEEEeeccceEEEEecccceeE------------EEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            999999 8999999999999988643321            1111 24568889999987 8999999999999966543


Q ss_pred             ccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEe
Q 018675          300 DLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       300 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      ..       ........|..+|+.+.||+|++ +|.+-+.|-.|..|.
T Consensus       480 g~-------~y~r~~k~~gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  480 GR-------KYSRVGKCSGSPITHLDWSSDSQ-FLVSNSGDYEILYWK  519 (626)
T ss_pred             Cc-------EEEEeeeecCceeEEeeecCCCc-eEEeccCceEEEEEc
Confidence            21       11111223448999999999985 688999999999994

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.5e-24  Score=191.52  Aligned_cols=240  Identities=21%  Similarity=0.353  Sum_probs=191.7

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      +.....+..|...|.|+.....      ...+++|+.|..+.||.......+..     ...|..+|.++.|+++..+|+
T Consensus        18 ~~~~~~~~~hsaav~~lk~~~s------~r~~~~Gg~~~k~~L~~i~kp~~i~S-----~~~hespIeSl~f~~~E~Lla   86 (825)
T KOG0267|consen   18 VWDTREFVAHSAAVGCLKIRKS------SRSLVTGGEDEKVNLWAIGKPNAITS-----LTGHESPIESLTFDTSERLLA   86 (825)
T ss_pred             cccchhhhhhhhhhceeeeecc------ceeeccCCCceeeccccccCCchhhe-----eeccCCcceeeecCcchhhhc
Confidence            3444567789999999876433      46899999999999998865533221     256999999999999999999


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      +|+.+|+|++||.+...  .+.++.||...+.++.|+|-+.++++++.|..+++||++.   ..|.+.+.+|...+.++.
T Consensus        87 agsasgtiK~wDleeAk--~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk---~Gc~~~~~s~~~vv~~l~  161 (825)
T KOG0267|consen   87 AGSASGTIKVWDLEEAK--IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK---KGCSHTYKSHTRVVDVLR  161 (825)
T ss_pred             ccccCCceeeeehhhhh--hhhhhhccccCcceeeeccceEEeccccccccceehhhhc---cCceeeecCCcceeEEEe
Confidence            99999999999998653  3568889999999999999999999999999999999863   347788889999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          171 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      |+|+|.+++++++|..++|||....         .+......|+..+.++.|+|..-++++|+.|+++++||++...+..
T Consensus       162 lsP~Gr~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~  232 (825)
T KOG0267|consen  162 LSPDGRWVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS  232 (825)
T ss_pred             ecCCCceeeccCCcceeeeeccccc---------ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence            9999999999999999999976442         2223345799999999999999999999999999999987443322


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCCceEEecCC
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAA  287 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~  287 (352)
                      ..+            .....+.+..|.+.+..+..+.
T Consensus       233 s~~------------~~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  233 SGK------------PETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             ccC------------CccCCceeeeecCCceeeecCc
Confidence            111            1133467777887775444433

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=3.4e-23  Score=170.67  Aligned_cols=253  Identities=19%  Similarity=0.342  Sum_probs=182.2

Q ss_pred             ccCCcccee------eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecce
Q 018675            4 LDDGNYELR------EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTV   77 (352)
Q Consensus         4 ~~~~~~~~~------~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v   77 (352)
                      .-||.+++.      ++.+++.|.+.|.+|++.-.        .++|+|+|++|+.|.++.+-     ...+  .-...+
T Consensus        86 s~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~--------~~~tvgdDKtvK~wk~~~~p-----~~ti--lg~s~~  150 (433)
T KOG0268|consen   86 SCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT--------SFFTVGDDKTVKQWKIDGPP-----LHTI--LGKSVY  150 (433)
T ss_pred             ccCceEEEEehhhhhhhheeecccCceeeEEeccc--------ceEEecCCcceeeeeccCCc-----ceee--eccccc
Confidence            456666653      34578999999999998753        58999999999999876531     1111  112345


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEE
Q 018675           78 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECV  156 (352)
Q Consensus        78 ~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~  156 (352)
                      ..+.-+..+..++|+|.  .|.|||.....  ++..+.--...|.++.|+|.- ..|++|+.|++|.++|++.+.+.+.+
T Consensus       151 ~gIdh~~~~~~FaTcGe--~i~IWD~~R~~--Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV  226 (433)
T KOG0268|consen  151 LGIDHHRKNSVFATCGE--QIDIWDEQRDN--PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV  226 (433)
T ss_pred             cccccccccccccccCc--eeeecccccCC--ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcccee
Confidence            56665656677888875  48899976543  344444345679999999954 46888889999999999877655433


Q ss_pred             EEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCC
Q 018675          157 SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL  236 (352)
Q Consensus       157 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg  236 (352)
                      ..-    -.-+.++|+|..-.+++|++|..+..||++.-        .+......+|.+.|.+++|+|.|+.+++||-|.
T Consensus       227 i~~----mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l--------~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk  294 (433)
T KOG0268|consen  227 ILT----MRTNTICWNPEAFNFVAANEDHNLYTYDMRNL--------SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK  294 (433)
T ss_pred             eee----ccccceecCccccceeeccccccceehhhhhh--------cccchhhcccceeEEEeccCCCcchhccccccc
Confidence            221    13457889997777899999999999976542        222334568999999999999999999999999


Q ss_pred             cEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccC
Q 018675          237 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK  298 (352)
Q Consensus       237 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~  298 (352)
                      +|+||..+-..  +.         ......-.+.++++.|+-+. ++++|+.|+.+++|....
T Consensus       295 sIRIf~~~~~~--SR---------diYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  295 SIRIFPVNHGH--SR---------DIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             eEEEeecCCCc--ch---------hhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            99999765211  00         00011124568889988764 899999999999996543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4.2e-23  Score=185.02  Aligned_cols=248  Identities=15%  Similarity=0.325  Sum_probs=176.6

Q ss_pred             EEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeeccee--cceEEEEECC-CCCEEEEEeCCCcEEEE
Q 018675           25 WSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT--RTVRSCAWSP-SGKLLATASFDATTCIW  101 (352)
Q Consensus        25 ~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~-~~~~l~s~~~d~~i~i~  101 (352)
                      ++|..+++.      ..++.++ --.++||.........++....+...+  ..+..+.|.. +.++|||++..|.|.+|
T Consensus        43 nAIs~nr~~------~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW  115 (839)
T KOG0269|consen   43 NAISVNRDI------NQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW  115 (839)
T ss_pred             ceEeecCCc------ceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence            345555653      3455554 347888876654322222211111111  2445677764 46899999999999999


Q ss_pred             EccC-CceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC-CCEE
Q 018675          102 EDVG-GDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVL  178 (352)
Q Consensus       102 ~~~~-~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l  178 (352)
                      |... .....+..+..|...|+++.|++ ..++|++||.||+|++||++....   ..++.+....|+.+.|+|. +..+
T Consensus       116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S---~~t~~~nSESiRDV~fsp~~~~~F  192 (839)
T KOG0269|consen  116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS---KSTFRSNSESIRDVKFSPGYGNKF  192 (839)
T ss_pred             ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc---cccccccchhhhceeeccCCCceE
Confidence            9753 22344567789999999999987 567899999999999999976543   4556677889999999995 5678


Q ss_pred             EEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccce
Q 018675          179 FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWR  258 (352)
Q Consensus       179 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  258 (352)
                      +++...|.+++||++..+.        ......+|.++|.++.|+|++.+|||||.|++|+||+....+..         
T Consensus       193 ~s~~dsG~lqlWDlRqp~r--------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~---------  255 (839)
T KOG0269|consen  193 ASIHDSGYLQLWDLRQPDR--------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK---------  255 (839)
T ss_pred             EEecCCceEEEeeccCchh--------HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc---------
Confidence            8999999999999876532        12234589999999999999999999999999999986321100         


Q ss_pred             eeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEec
Q 018675          259 HLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS  338 (352)
Q Consensus       259 ~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~  338 (352)
                      ...                                                .+.    -..+|.++.|=|+.+..|||++
T Consensus       256 ~~~------------------------------------------------tIn----Tiapv~rVkWRP~~~~hLAtcs  283 (839)
T KOG0269|consen  256 PKH------------------------------------------------TIN----TIAPVGRVKWRPARSYHLATCS  283 (839)
T ss_pred             cee------------------------------------------------EEe----ecceeeeeeeccCccchhhhhh
Confidence            000                                                001    1246888889888877788776


Q ss_pred             C--CCeEEEEeeccC
Q 018675          339 D--DGMIKIWELANT  351 (352)
Q Consensus       339 ~--Dg~i~iw~~~~~  351 (352)
                      .  |-.|+|||++++
T Consensus       284 mv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  284 MVVDTSVHVWDVRRP  298 (839)
T ss_pred             ccccceEEEEeeccc
Confidence            4  677999999876

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.2e-22  Score=168.68  Aligned_cols=246  Identities=18%  Similarity=0.254  Sum_probs=179.9

Q ss_pred             EEEEee-CCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccC
Q 018675           41 VFASCS-GDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHEN  119 (352)
Q Consensus        41 ~l~s~s-~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~  119 (352)
                      +++++. .-..+.+|.+......-     .+..-.++|.+++-+|+|.+|+.|+..+.+.+|...+|.  .+..+.+|=.
T Consensus        52 yllsaq~~rp~l~vw~i~k~~~~~-----q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~--LL~v~~aHYQ  124 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKKDQVV-----QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI--LLNVLSAHYQ  124 (476)
T ss_pred             heeeecccCccccccccCchhhhh-----hhcccccceeeeecCCCceEEEeecccCcEEEEEecccc--HHHHHHhhcc
Confidence            455543 33467778765432211     122346789999999999999999899999999998884  4566789999


Q ss_pred             CeeEEEECCCCcEEEEeeCCCcEEEEecC------CCCeeEEEEEeecCccCeeEEEEcCC--CCEEEEEeCCCcEEEEe
Q 018675          120 EVKSVSWNASGTLLATCGRDKSVWIWEVM------PGNEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKVWW  191 (352)
Q Consensus       120 ~v~~v~~~~~~~~l~s~~~d~~v~vwd~~------~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~iw~  191 (352)
                      .|+|+.|+.|+.+|+|||.||.|.+|.+.      +....++++.+..|.-+|+.+...+.  ...++++|.|+++++|+
T Consensus       125 ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd  204 (476)
T KOG0646|consen  125 SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD  204 (476)
T ss_pred             ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence            99999999999999999999999999862      12244567889999999999987654  46899999999999998


Q ss_pred             cCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcce
Q 018675          192 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI  271 (352)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  271 (352)
                      +...     ..+.++     .....+.++..+|.++.+..|+.+|.|-+..+....-++                     
T Consensus       205 lS~g-----~LLlti-----~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~---------------------  253 (476)
T KOG0646|consen  205 LSLG-----VLLLTI-----TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS---------------------  253 (476)
T ss_pred             eccc-----eeeEEE-----ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc---------------------
Confidence            7553     122233     235689999999999999999999998887653110000                     


Q ss_pred             EEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCc--ceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          272 FSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM--DVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       272 ~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                             .+.        ..+.+...          ...+....||.+  +|+|++.+-|+. +|+||++||.+.|||+.
T Consensus       254 -------~~v--------~~k~~~~~----------~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  254 -------AGV--------NQKGRHEE----------NTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             -------ccc--------cccccccc----------cceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecc
Confidence                   000        00000000          011223467877  999999999986 78999999999999985


Q ss_pred             c
Q 018675          350 N  350 (352)
Q Consensus       350 ~  350 (352)
                      .
T Consensus       308 S  308 (476)
T KOG0646|consen  308 S  308 (476)
T ss_pred             h
Confidence            4

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=9.9e-22  Score=168.51  Aligned_cols=268  Identities=22%  Similarity=0.351  Sum_probs=181.9

Q ss_pred             CCccceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC
Q 018675            6 DGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS   85 (352)
Q Consensus         6 ~~~~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~   85 (352)
                      .|++.-.-..+..||.+..+.++.+|++      ++++||+.|+++++|+  ..+..|..      .-..++.|++|+|.
T Consensus       353 ~Gt~~~~f~~~v~gh~delwgla~hps~------~q~~T~gqdk~v~lW~--~~k~~wt~------~~~d~~~~~~fhps  418 (626)
T KOG2106|consen  353 QGTLENGFTLTVQGHGDELWGLATHPSK------NQLLTCGQDKHVRLWN--DHKLEWTK------IIEDPAECADFHPS  418 (626)
T ss_pred             EeeecCCceEEEEecccceeeEEcCCCh------hheeeccCcceEEEcc--CCceeEEE------EecCceeEeeccCc
Confidence            3444433444567999999999999985      6899999999999999  33333432      23468899999999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCC-CeeEEEEEeecCcc
Q 018675           86 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG-NEFECVSVLQGHAQ  164 (352)
Q Consensus        86 ~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~h~~  164 (352)
                      | .+|.|...|...+.|.++...  +..-.. ++++++++|+|+|.+||.|+.|+.|.+|.+... ..+..+....+  +
T Consensus       419 g-~va~Gt~~G~w~V~d~e~~~l--v~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s  492 (626)
T KOG2106|consen  419 G-VVAVGTATGRWFVLDTETQDL--VTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--S  492 (626)
T ss_pred             c-eEEEeeccceEEEEeccccee--EEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC--c
Confidence            9 999999999988888776432  222223 789999999999999999999999999998644 33444444444  7


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC---CCEEEEEeCCCcEEEE
Q 018675          165 DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK---GDKLVSCSDDLTIKIW  241 (352)
Q Consensus       165 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~s~~~dg~i~iw  241 (352)
                      +|+.++|++|++++.+-+.|-.|.+|....-..                ..++..+.|-..   -.+.+.|+.||+..  
T Consensus       493 ~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~----------------~ts~kDvkW~t~~c~lGF~v~g~s~~t~i--  554 (626)
T KOG2106|consen  493 PITHLDWSSDSQFLVSNSGDYEILYWKPSECKQ----------------ITSVKDVKWATYTCTLGFEVFGGSDGTDI--  554 (626)
T ss_pred             eeEEeeecCCCceEEeccCceEEEEEccccCcc----------------cceecceeeeeeEEEEEEEEecccCCchH--
Confidence            899999999999999999999999993221110                011333333211   01223333333210  


Q ss_pred             cCCccccccCCCCccceeeEEeecccCcceEEEEec-CCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcc
Q 018675          242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS-REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD  320 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  320 (352)
                                                    ..++-+ ...++++|...|++++|.+.=.      ..+....+..+|+..
T Consensus       555 ------------------------------~a~~rs~~~~~lA~gdd~g~v~lf~yPc~------s~rA~~he~~ghs~~  598 (626)
T KOG2106|consen  555 ------------------------------NAVARSHCEKLLASGDDFGKVHLFSYPCS------SPRAPSHEYGGHSSH  598 (626)
T ss_pred             ------------------------------HHhhhhhhhhhhhccccCceEEEEccccC------CCcccceeeccccce
Confidence                                          000001 1235666666677777643210      112223456799999


Q ss_pred             eeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          321 VNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       321 i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      |++++|+-+.. +|+|.+.|..|..|++
T Consensus       599 vt~V~Fl~~d~-~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  599 VTNVAFLCKDS-HLISTGKDTSIMQWRL  625 (626)
T ss_pred             eEEEEEeeCCc-eEEecCCCceEEEEEe
Confidence            99999998765 5667779999999986

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.8e-21  Score=177.76  Aligned_cols=253  Identities=19%  Similarity=0.335  Sum_probs=186.6

Q ss_pred             ecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCC
Q 018675           70 EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP  149 (352)
Q Consensus        70 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~  149 (352)
                      +.+|+...+.++|.|+|..|.+++.|+.|++|+.......+ ..+.-+...|.+++-  .+++|++|+.+++|.++.+..
T Consensus         9 Ryaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen    9 RYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-chhhccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence            35688889999999999999999999999999865431111 122225667777764  445899999999999999876


Q ss_pred             CCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE
Q 018675          150 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL  229 (352)
Q Consensus       150 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  229 (352)
                      +.....+..   .+.++++++++-++.+++.||.|-.|++-+..+....         ....+|..+|.+|.|+|++.+|
T Consensus        86 ~~~~~iL~R---ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~---------~~lrgh~apVl~l~~~p~~~fL  153 (933)
T KOG1274|consen   86 GEEDTILAR---FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE---------KVLRGHDAPVLQLSYDPKGNFL  153 (933)
T ss_pred             CCccceeee---eeccceEEEEecCCcEEEeecCceeEEEEeccccchh---------eeecccCCceeeeeEcCCCCEE
Confidence            655434433   3568899999999999999999999999977654321         1234799999999999999999


Q ss_pred             EEEeCCCcEEEEcCCccccccCCCCccceeeEEeeccc-CcceEEEEecCC-ceEEecCCCCeEEEEEccCCccccCccc
Q 018675          230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH-DRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSY  307 (352)
Q Consensus       230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~~~~  307 (352)
                      |+.+-||.|++|++......     ..+.....-.... ...+..++|+|+ +.++..+.|+.|.+|........     
T Consensus       154 Avss~dG~v~iw~~~~~~~~-----~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~-----  223 (933)
T KOG1274|consen  154 AVSSCDGKVQIWDLQDGILS-----KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ-----  223 (933)
T ss_pred             EEEecCceEEEEEcccchhh-----hhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh-----
Confidence            99999999999998633221     0111111111111 345667899997 68999999999999966543221     


Q ss_pred             ceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       308 ~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                        ......-|...+..+.|+|.|+ +||+++.||.|.||++++
T Consensus       224 --f~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  224 --FKLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDT  263 (933)
T ss_pred             --eeecccccccceEEEEEcCCCc-EEeeeccCCcEEEEeccc
Confidence              1112234455599999999986 689999999999999973

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=8e-22  Score=163.45  Aligned_cols=265  Identities=21%  Similarity=0.377  Sum_probs=183.4

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCcee------------eeeeeeeecceecceEEEEECC
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRF------------WNCKAVLEEMHTRTVRSCAWSP   84 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~------------~~~~~~~~~~h~~~v~~~~~s~   84 (352)
                      ..+|.+.++-+...|..    ...+.|+=+..|.|.||++......            ..+.. ....|...=+.+.|||
T Consensus       147 ~i~h~g~~NRvr~~~~~----~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~-t~~ghk~EGy~LdWSp  221 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLG----NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLF-TFNGHKGEGYGLDWSP  221 (440)
T ss_pred             ccccccccceeeecccC----CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceE-EecccCccceeeeccc
Confidence            34688888777766642    2357777788999999997532110            00111 1134666668999999


Q ss_pred             CC-CEEEEEeCCCcEEEEEccCCceeeeE-eeccccCCeeEEEECCC-CcEEEEeeCCCcEEEEecCCCCeeEEEEEeec
Q 018675           85 SG-KLLATASFDATTCIWEDVGGDYECVA-TLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQG  161 (352)
Q Consensus        85 ~~-~~l~s~~~d~~i~i~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  161 (352)
                      -. ..|++|..-+.|++|...++.+..-. -+.+|+..|..+.|+|. ...|++||-|++|+|||++.++...++.. ++
T Consensus       222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kA  300 (440)
T KOG0302|consen  222 IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KA  300 (440)
T ss_pred             ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ec
Confidence            43 34788888899999988777654321 24579999999999995 45899999999999999998765555544 88


Q ss_pred             CccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEE
Q 018675          162 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKI  240 (352)
Q Consensus       162 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~~~dg~i~i  240 (352)
                      |...|+.+.|+....+|++|+.||+++|||++.-...  ..+.+    ..-|..+|++|.|+|. ...|+++|.|..|.+
T Consensus       301 h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~--~pVA~----fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  301 HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG--QPVAT----FKYHKAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC--Cccee----EEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence            9999999999998889999999999999998764432  11222    2358999999999996 456788899999999


Q ss_pred             EcCCccccc------cCCCCccceeeEEeecccCcceEEEEecCC--ceEEecCCCCeEEE
Q 018675          241 WGADITRMQ------SGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQF  293 (352)
Q Consensus       241 wd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~s~~~d~~v~~  293 (352)
                      ||+.+....      ...++....+---|..--...+.-++|.++  +++++-+.||.-.+
T Consensus       375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf  435 (440)
T KOG0302|consen  375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF  435 (440)
T ss_pred             EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence            998653321      111111111111111101234556778774  68888888875443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=2.6e-22  Score=161.45  Aligned_cols=222  Identities=17%  Similarity=0.326  Sum_probs=156.8

Q ss_pred             eecceecceEEEEECC-CCCEEEEEeCCCcEEEEEccCCc------e----ee---eEeeccccCCeeEEEECC-CCcEE
Q 018675           69 LEEMHTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGD------Y----EC---VATLEGHENEVKSVSWNA-SGTLL  133 (352)
Q Consensus        69 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~i~~~~~~~------~----~~---~~~~~~h~~~v~~v~~~~-~~~~l  133 (352)
                      ++..|.+.|+++...+ .|+++++|+.||.|.+||.++..      .    .+   ...-.+|.-.|..+.|.| |.-.|
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            3456889999999987 68999999999999999976532      1    11   112346778899999999 55588


Q ss_pred             EEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC---CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccC
Q 018675          134 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP---TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN  210 (352)
Q Consensus       134 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  210 (352)
                      .+++-|.+++|||...-+   ....++ -...|-+-+++|   ...++++|..|-.|++.|+....     +.+++    
T Consensus       118 tssSFDhtlKVWDtnTlQ---~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-----~sH~L----  184 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQ---EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-----FSHTL----  184 (397)
T ss_pred             ecccccceEEEeecccce---eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-----ceeee----
Confidence            999999999999975432   222221 123344445665   24467778888899999876532     23334    


Q ss_pred             CCCcccEEEEEEcCCCCE-EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCC
Q 018675          211 NGHSSTIWALSFNAKGDK-LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD  289 (352)
Q Consensus       211 ~~h~~~i~~l~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~  289 (352)
                      .||...|.++.|+|..++ |++|+.||.||+||++..                     ......+..+            
T Consensus       185 sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra---------------------sgcf~~lD~h------------  231 (397)
T KOG4283|consen  185 SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA---------------------SGCFRVLDQH------------  231 (397)
T ss_pred             ccccCceEEEEeccCceeEEEecCCCceEEEEEeecc---------------------cceeEEeecc------------
Confidence            489999999999998776 668999999999997521                     0001111100            


Q ss_pred             eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       290 ~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                                   ++ ....+.+....|.+.++.++|+.++++ +++++.|..+++|+..++
T Consensus       232 -------------n~-k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  232 -------------NT-KRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIRVWNMESG  278 (397)
T ss_pred             -------------cC-ccCccccccccccceeeeeeecccchh-hhhccCccceEEeecccC
Confidence                         00 011223345689999999999999975 779999999999998764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=3e-21  Score=156.22  Aligned_cols=247  Identities=19%  Similarity=0.305  Sum_probs=170.4

Q ss_pred             ecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCee
Q 018675           74 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF  153 (352)
Q Consensus        74 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  153 (352)
                      ...|.++.|+|.+..|+.+++||++++|+.....  ....+ .|..++.+++|.+. ..+++|+-|+.|+.+|+..++. 
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-   87 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-   87 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-
Confidence            4679999999999999999999999999976553  22333 48899999999874 5788999999999999976543 


Q ss_pred             EEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe
Q 018675          154 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS  233 (352)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~  233 (352)
                         ..+..|...+.|+.+.+....+++||+|++|++||.+...     ...++     .....|.+++..  ++.|+.|+
T Consensus        88 ---~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-----~~~~~-----d~~kkVy~~~v~--g~~LvVg~  152 (323)
T KOG1036|consen   88 ---DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-----VVGTF-----DQGKKVYCMDVS--GNRLVVGT  152 (323)
T ss_pred             ---eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-----ccccc-----ccCceEEEEecc--CCEEEEee
Confidence               3456799999999999988899999999999999876421     11111     123478888765  66799999


Q ss_pred             CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCC-ceEEecCCCCeEEEEEccCCccccCccc----c
Q 018675          234 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSY----K  308 (352)
Q Consensus       234 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~~~~----~  308 (352)
                      .|..+.+||++.......      +...    ...-.+.+++.-|+ .-+++++-+|-+.+=.....+.......    +
T Consensus       153 ~~r~v~iyDLRn~~~~~q------~reS----~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH  222 (323)
T KOG1036|consen  153 SDRKVLIYDLRNLDEPFQ------RRES----SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH  222 (323)
T ss_pred             cCceEEEEEcccccchhh------hccc----cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence            999999999875332110      0000    01123455555553 2466777888776532222111111110    1


Q ss_pred             eeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          309 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       309 ~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      ........--.+|++++|+|-. ..|||||.||.|.+||..++
T Consensus       223 r~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  223 RLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNR  264 (323)
T ss_pred             ecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcch
Confidence            1111112223689999999975 46899999999999998653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=5e-20  Score=160.27  Aligned_cols=272  Identities=15%  Similarity=0.175  Sum_probs=173.8

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE-EEEeCCCcEEEEEccCCceeeeEeecccc
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEGHE  118 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~i~~~~~~~~~~~~~~~~h~  118 (352)
                      .+++|++.|+.+++|+..+++...    .+.  +...+..++|+|+++.+ ++++.++.+.+||..+++.  ...+..+ 
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~----~~~--~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~-   72 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTR----TFP--VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTLPSG-   72 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEE----EEE--CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEeccCC-
Confidence            478999999999999987764322    221  12346789999999876 5677889999999876543  3334433 


Q ss_pred             CCeeEEEECCCCcEEEE-eeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCc-EEEEecCCCC
Q 018675          119 NEVKSVSWNASGTLLAT-CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT-IKVWWAEDTD  196 (352)
Q Consensus       119 ~~v~~v~~~~~~~~l~s-~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-i~iw~~~~~~  196 (352)
                      ..+..+.|+|+++.+++ ++.|+.+++||+....   .+..+.. ...+..+.|+|++..+++++.++. +.+|+.... 
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~---~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~-  147 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRK---VLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY-  147 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCe---EEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC-
Confidence            33567899999987654 5568999999986543   2333332 234678999999999998887754 556654321 


Q ss_pred             CCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE-EEeCCCcEEEEcCCccccccCCCCccceeeEEeeccc--CcceEE
Q 018675          197 SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH--DRTIFS  273 (352)
Q Consensus       197 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~  273 (352)
                          .....+.     ....+.++.|+|++++|+ ++..++.|++||++..+....     +.  ......+  ......
T Consensus       148 ----~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~-----~~--~~~~~~~~~~~~~~~  211 (300)
T TIGR03866       148 ----EIVDNVL-----VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK-----IT--FEIPGVHPEAVQPVG  211 (300)
T ss_pred             ----eEEEEEE-----cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee-----ee--ecccccccccCCccc
Confidence                1222111     122356789999999885 445699999999864321100     00  0000000  112335


Q ss_pred             EEecCCce--EEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          274 VHWSREGI--IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       274 ~~~~~~~~--~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      +.+++++.  +++...++.+.+|+.....+         .... .+...+.+++|+|+++.++++++.+|.|+|||+...
T Consensus       212 i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~---------~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~  281 (300)
T TIGR03866       212 IKLTKDGKTAFVALGPANRVAVVDAKTYEV---------LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL  281 (300)
T ss_pred             eEECCCCCEEEEEcCCCCeEEEEECCCCcE---------EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            66777663  34455567789986532211         1111 233468999999999866555677999999998753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=9.5e-21  Score=154.53  Aligned_cols=319  Identities=19%  Similarity=0.343  Sum_probs=210.5

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC----CCEEEEE
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS----GKLLATA   92 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s~   92 (352)
                      .++|...|++++|.+.... ...+.+||+| ...+.+|+.......-.........|....+.|+|+-+    ..++|.|
T Consensus        34 ~ed~~~~I~gv~fN~~~~~-~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGC-DEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hccCCCccceeeeehhcCC-CCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            4689999999999874321 1246677765 55788887654432111111122347778889999654    4588899


Q ss_pred             eCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCC-CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      +.-|.|++.|...+  ++...+.+|...|+.+.++|. .++++++|.|.+|++|+++...=.....-..+|...|.+++|
T Consensus       112 G~~GvIrVid~~~~--~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSG--QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             cceeEEEEEecchh--hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence            99999999998765  456778899999999999995 468999999999999999765322223345689999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCC-------------CCceeEee----ee--ccCCCCcccEEEEEEcCCCCEEEEE
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDS-------------DNWHCVQT----IS--ESNNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~-------------~~~~~~~~----~~--~~~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                      ++++.++++++.|.++++|.+...+-             .+.....+    +.  .....|...|-++.|-  |++++|=
T Consensus       190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk  267 (385)
T KOG1034|consen  190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK  267 (385)
T ss_pred             cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence            99999999999999999998762110             00000000    00  1234577777777776  5789998


Q ss_pred             eCCCcEEEEcC-CccccccCCCCccceeeEEe---ecccCcceEEE--EecC-CceEEecCCCCeEEEEEccCCccccCc
Q 018675          233 SDDLTIKIWGA-DITRMQSGDGYASWRHLCTI---SGYHDRTIFSV--HWSR-EGIIASGAADDSVQFFVESKDDLIDGP  305 (352)
Q Consensus       233 ~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~--~~~~-~~~~~s~~~d~~v~~~~~~~~~~~~~~  305 (352)
                      +-++.|..|.. ++.+..  .+........+.   ..+....++-+  ++++ ..+++.|.+.|.+++|+....+-.   
T Consensus       268 scenaI~~w~pgkl~e~~--~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~---  342 (385)
T KOG1034|consen  268 SCENAIVCWKPGKLEESI--HNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP---  342 (385)
T ss_pred             ccCceEEEEecchhhhhh--hccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc---
Confidence            88999999965 221110  000000011111   11223334444  3333 358999999999999976543221   


Q ss_pred             ccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          306 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       306 ~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                        .........-...|...+||-|+. +|+...+|++|-=||.-
T Consensus       343 --~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  343 --KCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             --cCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence              111111122356899999999987 56678889999888864

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.2e-20  Score=152.75  Aligned_cols=227  Identities=25%  Similarity=0.473  Sum_probs=164.1

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecC-----CCceeeeeeeeeecceecceEEEEECCC
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQS-----ASSRFWNCKAVLEEMHTRTVRSCAWSPS   85 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~-----~~~~~~~~~~~~~~~h~~~v~~~~~s~~   85 (352)
                      ..+...-+.|.+.|+-|.|-+..    .|+.+|+||.|++++||+-.     .....|.....+ ..-...|+.+.|.|.
T Consensus        49 W~~Ts~Wrah~~Si~rV~WAhPE----fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl-~DsrssV~DV~FaP~  123 (361)
T KOG2445|consen   49 WSCTSSWRAHDGSIWRVVWAHPE----FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTL-VDSRSSVTDVKFAPK  123 (361)
T ss_pred             eEEeeeEEecCCcEEEEEecCcc----ccceEEEEecCCceeeeeecccccccccceeEEEEEe-ecCCcceeEEEecch
Confidence            45666778899999999996543    37999999999999999642     112234333333 224578999999995


Q ss_pred             --CCEEEEEeCCCcEEEEEccCC----ceeeeEeec-------cccCCeeEEEECCC---CcEEEEeeCC-----CcEEE
Q 018675           86 --GKLLATASFDATTCIWEDVGG----DYECVATLE-------GHENEVKSVSWNAS---GTLLATCGRD-----KSVWI  144 (352)
Q Consensus        86 --~~~l~s~~~d~~i~i~~~~~~----~~~~~~~~~-------~h~~~v~~v~~~~~---~~~l~s~~~d-----~~v~v  144 (352)
                        |-.||+++.||.++||+....    .+.+...++       .+...-.|+.|+|.   ..+|+.|+.+     +.+.+
T Consensus       124 hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~I  203 (361)
T KOG2445|consen  124 HLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKI  203 (361)
T ss_pred             hcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEE
Confidence              678999999999999985421    112222222       45567789999974   3467766665     47889


Q ss_pred             EecCCCC-eeEEEEEeecCccCeeEEEEcCC----CCEEEEEeCCCcEEEEecCCCC----------CCC-c-eeEeeee
Q 018675          145 WEVMPGN-EFECVSVLQGHAQDVKMVQWHPT----MDVLFSCSYDNTIKVWWAEDTD----------SDN-W-HCVQTIS  207 (352)
Q Consensus       145 wd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~----------~~~-~-~~~~~~~  207 (352)
                      |.-.... ....+..+.+|..+|+.++|.|.    ..+|++++.|| |+||.+....          ... . ..+..+ 
T Consensus       204 ye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~v-  281 (361)
T KOG2445|consen  204 YEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKV-  281 (361)
T ss_pred             EEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEe-
Confidence            9865433 56667788899999999999996    34789999999 9999876311          110 0 111112 


Q ss_pred             ccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          208 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       208 ~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      .....|...|+.+.|+=.|..|++.|.||.||+|..+
T Consensus       282 s~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  282 SELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            3456899999999999999999999999999999754

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=6.7e-23  Score=182.51  Aligned_cols=253  Identities=21%  Similarity=0.406  Sum_probs=194.5

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccC
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHEN  119 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~  119 (352)
                      .+++....+-.+++|+....           ..|...|.++..-..++.+++|+.|-.+.+|...  +...+..+.+|..
T Consensus         5 ~~~m~~~~~t~Lr~~~~~~~-----------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~--kp~~i~S~~~hes   71 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTREF-----------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIG--KPNAITSLTGHES   71 (825)
T ss_pred             cccceeeeeeccccccchhh-----------hhhhhhhceeeeeccceeeccCCCceeecccccc--CCchhheeeccCC
Confidence            34566666777888875421           2377788888777788999999999999999653  2234556889999


Q ss_pred             CeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 018675          120 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN  199 (352)
Q Consensus       120 ~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~  199 (352)
                      +|.++.|++...+|++|+.||+|++||+....   .++.+.+|..++.++.|+|-+.+.++|+.|..+++||....    
T Consensus        72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk---~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~----  144 (825)
T KOG0267|consen   72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAK---IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK----  144 (825)
T ss_pred             cceeeecCcchhhhcccccCCceeeeehhhhh---hhhhhhccccCcceeeeccceEEeccccccccceehhhhcc----
Confidence            99999999999999999999999999997553   46688899999999999999999999999999999976532    


Q ss_pred             ceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCC
Q 018675          200 WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE  279 (352)
Q Consensus       200 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  279 (352)
                       .|.+..    ++|...+..+.|+|+|.+++++++|..++|||+...++.           ..+ ..|+..+.++.+.+.
T Consensus       145 -Gc~~~~----~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-----------~ef-~~~e~~v~sle~hp~  207 (825)
T KOG0267|consen  145 -GCSHTY----KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-----------KEF-KSHEGKVQSLEFHPL  207 (825)
T ss_pred             -Cceeee----cCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-----------ccc-ccccccccccccCch
Confidence             233332    368889999999999999999999999999997533221           111 125667777888876


Q ss_pred             c-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecC
Q 018675          280 G-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD  339 (352)
Q Consensus       280 ~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~  339 (352)
                      . .++.|+.|+++++|+...-         +++.........|.+.+|+|++.. +.+|-.
T Consensus       208 e~Lla~Gs~d~tv~f~dletf---------e~I~s~~~~~~~v~~~~fn~~~~~-~~~G~q  258 (825)
T KOG0267|consen  208 EVLLAPGSSDRTVRFWDLETF---------EVISSGKPETDGVRSLAFNPDGKI-VLSGEQ  258 (825)
T ss_pred             hhhhccCCCCceeeeecccee---------EEeeccCCccCCceeeeecCCcee-eecCch
Confidence            6 5789999999999976432         222333344678999999999863 445543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=6.1e-20  Score=167.87  Aligned_cols=269  Identities=19%  Similarity=0.350  Sum_probs=197.9

Q ss_pred             cCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCc
Q 018675           18 EGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDAT   97 (352)
Q Consensus        18 ~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   97 (352)
                      .+|++.-+.|+|.|+      +.++.||+.||.|++|+......  . +..+ ..+...|.+++..  +.++++|+.+++
T Consensus        10 yaht~G~t~i~~d~~------gefi~tcgsdg~ir~~~~~sd~e--~-P~ti-~~~g~~v~~ia~~--s~~f~~~s~~~t   77 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPD------GEFICTCGSDGDIRKWKTNSDEE--E-PETI-DISGELVSSIACY--SNHFLTGSEQNT   77 (933)
T ss_pred             hhccCceEEEEEcCC------CCEEEEecCCCceEEeecCCccc--C-Cchh-hccCceeEEEeec--ccceEEeeccce
Confidence            368888999999997      57999999999999998654421  1 1222 1256677777655  448999999999


Q ss_pred             EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCE
Q 018675           98 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV  177 (352)
Q Consensus        98 i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  177 (352)
                      |.+|....++..-+  +.-.+-++++++++.+|++++.||+|-.|++-++.....   ...+.+|..+|.++.|+|.+.+
T Consensus        78 v~~y~fps~~~~~i--L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~---~~~lrgh~apVl~l~~~p~~~f  152 (933)
T KOG1274|consen   78 VLRYKFPSGEEDTI--LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ---EKVLRGHDAPVLQLSYDPKGNF  152 (933)
T ss_pred             EEEeeCCCCCccce--eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch---heeecccCCceeeeeEcCCCCE
Confidence            99998766543322  222356789999999999999999999999998865442   4567899999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCceeEeeee---ccCCC-CcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCC
Q 018675          178 LFSCSYDNTIKVWWAEDTDSDNWHCVQTIS---ESNNG-HSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG  253 (352)
Q Consensus       178 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~---~~~~~-h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  253 (352)
                      |++.+-||.+++|++.+...     ..++.   ..... ....+..++|+|++..++..+.|+.|++|+.+         
T Consensus       153 LAvss~dG~v~iw~~~~~~~-----~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~---------  218 (933)
T KOG1274|consen  153 LAVSSCDGKVQIWDLQDGIL-----SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK---------  218 (933)
T ss_pred             EEEEecCceEEEEEcccchh-----hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC---------
Confidence            99999999999998865321     11111   11111 13456779999998889999999999999753         


Q ss_pred             CccceeeEEeecc-cCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCc
Q 018675          254 YASWRHLCTISGY-HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER  331 (352)
Q Consensus       254 ~~~~~~~~~~~~~-~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  331 (352)
                        .|.....+... +...+..+.|+|.| |+|++.-||.|.+|+....+             .+.....|++++|.|+..
T Consensus       219 --~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~-------------~~~~~~~Vc~~aw~p~~n  283 (933)
T KOG1274|consen  219 --GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE-------------RHEFKRAVCCEAWKPNAN  283 (933)
T ss_pred             --CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch-------------hccccceeEEEecCCCCC
Confidence              34444444332 33347778999987 89999999999999664310             122346799999999865


Q ss_pred             c
Q 018675          332 R  332 (352)
Q Consensus       332 ~  332 (352)
                      .
T Consensus       284 ~  284 (933)
T KOG1274|consen  284 A  284 (933)
T ss_pred             e
Confidence            3

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.8e-19  Score=158.55  Aligned_cols=293  Identities=17%  Similarity=0.296  Sum_probs=206.4

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEE
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCI  100 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i  100 (352)
                      -..|.|++++..+      ..||.+=.||.|.+|++...   |-+...+.....+.|.+++|++ +..|.+.+.+|+|.-
T Consensus        25 Ps~I~slA~s~kS------~~lAvsRt~g~IEiwN~~~~---w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~E   94 (691)
T KOG2048|consen   25 PSEIVSLAYSHKS------NQLAVSRTDGNIEIWNLSNN---WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITE   94 (691)
T ss_pred             ccceEEEEEeccC------CceeeeccCCcEEEEccCCC---ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEE
Confidence            3578899998764      46888889999999998764   3333333233457899999994 556778889999999


Q ss_pred             EEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEE
Q 018675          101 WEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS  180 (352)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  180 (352)
                      ||..+.+  +...++...+.|++++.+|.+..++.|++||.+..+++.++. ..-...+......+.+++|+|++..+++
T Consensus        95 wDl~~lk--~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~-I~~~r~l~rq~sRvLslsw~~~~~~i~~  171 (691)
T KOG2048|consen   95 WDLHTLK--QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK-ITYKRSLMRQKSRVLSLSWNPTGTKIAG  171 (691)
T ss_pred             EecccCc--eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce-EEEEeecccccceEEEEEecCCccEEEe
Confidence            9988764  455666777899999999999999999999966666654332 2222344445578999999999999999


Q ss_pred             EeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceee
Q 018675          181 CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHL  260 (352)
Q Consensus       181 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  260 (352)
                      |+.||.|++||....+..-... ..+.....+-..-||+|.|=.++ .||+|..-|+|++||.....+.         +.
T Consensus       172 Gs~Dg~Iriwd~~~~~t~~~~~-~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLi---------qS  240 (691)
T KOG2048|consen  172 GSIDGVIRIWDVKSGQTLHIIT-MQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLI---------QS  240 (691)
T ss_pred             cccCceEEEEEcCCCceEEEee-ecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchh---------hh
Confidence            9999999999876543211000 01111112234568999887554 6899999999999986532211         11


Q ss_pred             EEeecccCcceEEEEecCC-ceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecC
Q 018675          261 CTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD  339 (352)
Q Consensus       261 ~~~~~~~~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~  339 (352)
                         ...|...+.+++..++ .++.+++.|+.+.-+......-     ..........|...|.+++..++   .+++||.
T Consensus       241 ---~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-----~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~  309 (691)
T KOG2048|consen  241 ---HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-----EWVINSRRDLHAHDVRSMAVIEN---ALISGGR  309 (691)
T ss_pred             ---hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-----ceeeeccccCCcccceeeeeecc---eEEecce
Confidence               1135667888888887 6899999999877665433211     02222334567788999998864   5779999


Q ss_pred             CCeEEEEee
Q 018675          340 DGMIKIWEL  348 (352)
Q Consensus       340 Dg~i~iw~~  348 (352)
                      |.++-+-..
T Consensus       310 d~~l~i~~s  318 (691)
T KOG2048|consen  310 DFTLAICSS  318 (691)
T ss_pred             eeEEEEccc
Confidence            998876443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.5e-19  Score=160.35  Aligned_cols=251  Identities=22%  Similarity=0.292  Sum_probs=184.7

Q ss_pred             eecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccc-cCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC
Q 018675           73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGH-ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~  151 (352)
                      ....|+++||+.+.+.||.+-.||.|-+|+...+ +.+..++.++ +..|.+++|++ +..|++.+.+|+|.-||+...+
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCc
Confidence            4578999999999999999999999999998764 3444455554 46799999995 5577899999999999997654


Q ss_pred             eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                      +   ...+......|++++.+|.+..++.|++||.+.++......       .+........++.|.+|+|+|++..+++
T Consensus       102 ~---~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~-------I~~~r~l~rq~sRvLslsw~~~~~~i~~  171 (691)
T KOG2048|consen  102 Q---KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK-------ITYKRSLMRQKSRVLSLSWNPTGTKIAG  171 (691)
T ss_pred             e---eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce-------EEEEeecccccceEEEEEecCCccEEEe
Confidence            3   44455667789999999999999999999966665433211       1122223345689999999999999999


Q ss_pred             EeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceee
Q 018675          232 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL  311 (352)
Q Consensus       232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~  311 (352)
                      |+.||.|++||.......-..    -.+...+.....-.++++.+-.++.+++|.+.|+|.+|+....         .++
T Consensus       172 Gs~Dg~Iriwd~~~~~t~~~~----~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g---------TLi  238 (691)
T KOG2048|consen  172 GSIDGVIRIWDVKSGQTLHII----TMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG---------TLI  238 (691)
T ss_pred             cccCceEEEEEcCCCceEEEe----eecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc---------chh
Confidence            999999999997643211000    0000111111233477888888999999999999999976443         334


Q ss_pred             ecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          312 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       312 ~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      +....|...|.+++..+++.. +.++|.|+.|.-+...
T Consensus       239 qS~~~h~adVl~Lav~~~~d~-vfsaGvd~~ii~~~~~  275 (691)
T KOG2048|consen  239 QSHSCHDADVLALAVADNEDR-VFSAGVDPKIIQYSLT  275 (691)
T ss_pred             hhhhhhhcceeEEEEcCCCCe-EEEccCCCceEEEEec
Confidence            456789999999999998765 5689999988776653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.3e-20  Score=157.25  Aligned_cols=318  Identities=14%  Similarity=0.142  Sum_probs=212.8

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCC--ceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSAS--SRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~--~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      .+.+|.+.|+++.|+.+      +++|++|+.|..+++|+.+..  .+.-++.......|...|.|++|....+.+.+|+
T Consensus        51 D~~~H~GCiNAlqFS~N------~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~  124 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHN------DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE  124 (609)
T ss_pred             hhhhhccccceeeeccC------CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence            45689999999999986      489999999999999987531  1111223334455778999999999999999999


Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                      .++++.+.|..+.+..-+..-....+.|..+..+|..+.|++.+.++.|.+||++..+.-.....+.........+-|+|
T Consensus       125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence            99999999988764322222222335899999999999999999999999999875442111122222334567788999


Q ss_pred             CCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccc---cc
Q 018675          174 TMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR---MQ  249 (352)
Q Consensus       174 ~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~  249 (352)
                      ... ++++++..+.+.+||.+......++....+  .+......-.++.|+|+|+.|++--....=.+||+-..+   ++
T Consensus       205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~--~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k  282 (609)
T KOG4227|consen  205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFK--GLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK  282 (609)
T ss_pred             CCceeEEeccccCCCCceeeccccchHHhhhccc--cCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence            654 678889999999998765432211111100  000101122467899999988876655555566653321   11


Q ss_pred             cCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccC---------c-----ccceeeeccc
Q 018675          250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG---------P-----SYKMLLKKEK  315 (352)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~---------~-----~~~~~~~~~~  315 (352)
                      ...+....        .+..++.+++|..+..+++|+.+-.+++|......-..+         .     .....+..+.
T Consensus       283 ~D~N~~GY--------~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr  354 (609)
T KOG4227|consen  283 SDHNPNGY--------CNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR  354 (609)
T ss_pred             ccCCCCcc--------eeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe
Confidence            11000000        123456778888888899999999999996543211100         0     0111123457


Q ss_pred             ccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          316 AHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       316 ~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ||..-++.+.|+|.. ++|++.|..+.++||+-.+
T Consensus       355 GHRSv~NQVRF~~H~-~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  355 GHRSVPNQVRFSQHN-NLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             cccccccceeecCCc-ceEeccchhhheecccccc
Confidence            999999999999976 6899999999999998654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.88  E-value=3.7e-20  Score=155.01  Aligned_cols=298  Identities=22%  Similarity=0.360  Sum_probs=191.5

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCce-----eeeeeeeeecceecceEEEEECCCCCEEEEEeCC
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSR-----FWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      ..+|+++.|.+..     ...+|||+.|..||+|.+.....     .......+ ..|..+|+++.|+|+|.+||+|+.+
T Consensus        13 ~~pv~s~dfq~n~-----~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~gelLASg~D~   86 (434)
T KOG1009|consen   13 HEPVYSVDFQKNS-----LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPDGELLASGGDG   86 (434)
T ss_pred             CCceEEEEeccCc-----ccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCCcCeeeecCCC
Confidence            4689999999874     23899999999999997654321     11111112 3589999999999999999999999


Q ss_pred             CcEEEEEcc--------C------CceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec
Q 018675           96 ATTCIWEDV--------G------GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG  161 (352)
Q Consensus        96 ~~i~i~~~~--------~------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  161 (352)
                      |.+.+|...        +      ..+.....+.+|...|..++|+|++.++++++.|+++++||+..+.   ....+..
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~---l~~~~~d  163 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ---LLAILDD  163 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce---eEeeccc
Confidence            999999754        1      1134455678899999999999999999999999999999997654   4566778


Q ss_pred             CccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeE---eeeeccCCC--------C----cccEEEEEEcCCC
Q 018675          162 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCV---QTISESNNG--------H----SSTIWALSFNAKG  226 (352)
Q Consensus       162 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---~~~~~~~~~--------h----~~~i~~l~~~~~~  226 (352)
                      |..-+..++|.|..+++++-+.|+..+.+........ ....   ........+        |    ......++|+|+|
T Consensus       164 h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~-~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG  242 (434)
T KOG1009|consen  164 HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVI-KRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG  242 (434)
T ss_pred             cccccceeecchhhhhhhhhccCcccceeeeeeeeee-eeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC
Confidence            8888999999999999999998886655533221110 0000   000000000        1    1233457899999


Q ss_pred             CEEEEEeC----CCcE-----EEEcCCccccccCCCCccceeeEEeecccCcceEEEEe------------------cCC
Q 018675          227 DKLVSCSD----DLTI-----KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW------------------SRE  279 (352)
Q Consensus       227 ~~l~s~~~----dg~i-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------------~~~  279 (352)
                      .+|++...    ++.+     .+|+-..          ..++.+.+.. .......+.+                  -|-
T Consensus       243 ~llvtPag~~~~g~~~~~n~tYvfsrk~----------l~rP~~~lp~-~~k~~lavr~~pVy~elrp~~~~~~~~~lpy  311 (434)
T KOG1009|consen  243 SLLVTPAGLFKVGGGVFRNTSYVFSRKD----------LKRPAARLPS-PKKPALAVRFSPVYYELRPLSSEKFLFVLPY  311 (434)
T ss_pred             cEEEcccceeeeCCceeeceeEeecccc----------ccCceeecCC-CCcceEEEEeeeeEEEecccccccccccccc
Confidence            99887642    2222     2232110          0011111111 0111111111                  123


Q ss_pred             ceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          280 GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       280 ~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      +++.+....+.+++|+..        ....+.....-|-.+|++++|++||.. ++-.|.||...+-.+
T Consensus       312 rlvfaiAt~~svyvydtq--------~~~P~~~v~nihy~~iTDiaws~dg~~-l~vSS~DGyCS~vtf  371 (434)
T KOG1009|consen  312 RLVFAIATKNSVYVYDTQ--------TLEPLAVVDNIHYSAITDIAWSDDGSV-LLVSSTDGFCSLVTF  371 (434)
T ss_pred             ceEEEEeecceEEEeccc--------cccceEEEeeeeeeeecceeecCCCcE-EEEeccCCceEEEEE
Confidence            455566667777877432        111222234467889999999999974 556888997665444

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.4e-20  Score=159.16  Aligned_cols=206  Identities=21%  Similarity=0.369  Sum_probs=150.9

Q ss_pred             EEEEccCC-CCCCCccEEEEeeCCCeEEEEecCCCceeeee----------------eeeeecceecceEEEEECCCC-C
Q 018675           26 SLAWKPTA-GVDGVAPVFASCSGDKTVRIWEQSASSRFWNC----------------KAVLEEMHTRTVRSCAWSPSG-K   87 (352)
Q Consensus        26 ~i~~~p~~-~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~----------------~~~~~~~h~~~v~~~~~s~~~-~   87 (352)
                      |+.|.-.. ...+.+.++|.|.-|..|.|||+.-...+.-+                +......|+..|.+++|+..- .
T Consensus       178 C~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n  257 (463)
T KOG0270|consen  178 CIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN  257 (463)
T ss_pred             hhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce
Confidence            55553221 13455789999999999999997533211100                011112588889999998754 5


Q ss_pred             EEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCe
Q 018675           88 LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV  166 (352)
Q Consensus        88 ~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v  166 (352)
                      .||+||.|.++++||..+++  +...+..|.+.|.++.|+| .+..|++|+.|++|.+.|.+..........+   ...|
T Consensus       258 VLaSgsaD~TV~lWD~~~g~--p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~---~g~V  332 (463)
T KOG0270|consen  258 VLASGSADKTVKLWDVDTGK--PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF---DGEV  332 (463)
T ss_pred             eEEecCCCceEEEEEcCCCC--cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe---ccce
Confidence            79999999999999998874  5667778999999999998 5678999999999999998742221112222   3467


Q ss_pred             eEEEEcCCCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEcCC
Q 018675          167 KMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       167 ~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~s~~~dg~i~iwd~~  244 (352)
                      -.++|.|... .++++..||.++-+|++....    ++.++    .+|..+|.+|++++.- .++++++.|+.|++|++.
T Consensus       333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~----~vwt~----~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK----PVWTL----KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             EEEEecCCCceeEEEecCCceEEeeecCCCCC----ceeEE----EeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence            8889988654 577888999999998876542    23333    3799999999999864 568899999999999874

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=2e-20  Score=151.86  Aligned_cols=207  Identities=22%  Similarity=0.350  Sum_probs=155.5

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      .+..+-.|.+.|+++.|.|..+    ...|++|+.||.|.+|+...    |.+...+ +.|.+.|+.++.+|.|++.++.
T Consensus        75 qlg~ll~HagsitaL~F~~~~S----~shLlS~sdDG~i~iw~~~~----W~~~~sl-K~H~~~Vt~lsiHPS~KLALsV  145 (362)
T KOG0294|consen   75 QLGILLSHAGSITALKFYPPLS----KSHLLSGSDDGHIIIWRVGS----WELLKSL-KAHKGQVTDLSIHPSGKLALSV  145 (362)
T ss_pred             hhcceeccccceEEEEecCCcc----hhheeeecCCCcEEEEEcCC----eEEeeee-cccccccceeEecCCCceEEEE
Confidence            4456668999999999988642    24899999999999999765    3333333 5688899999999999999999


Q ss_pred             eCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEc
Q 018675           93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH  172 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~  172 (352)
                      +.|+.++.|+..+++...+..+. +  ..+.+.|+|.|.+|+.++.++ |-+|.+.....+..+    ..+..+.++.|.
T Consensus       146 g~D~~lr~WNLV~Gr~a~v~~L~-~--~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i----~~~~r~l~~~~l  217 (362)
T KOG0294|consen  146 GGDQVLRTWNLVRGRVAFVLNLK-N--KATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREI----ENPKRILCATFL  217 (362)
T ss_pred             cCCceeeeehhhcCccceeeccC-C--cceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhh----hccccceeeeec
Confidence            99999999999887654444443 2  234499999999998888765 889987543321111    112345666665


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEE--cCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          173 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF--NAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       173 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~--~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                       ++..|++|+.|+.|.+||..+.     .+..    ...+|..+|.++.+  +|++.||+|.+.||.|++||+++.
T Consensus       218 -~~~~L~vG~d~~~i~~~D~ds~-----~~~~----~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  218 -DGSELLVGGDNEWISLKDTDSD-----TPLT----EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             -CCceEEEecCCceEEEeccCCC-----ccce----eeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence             4567899999999999975431     1122    23489999999984  678899999999999999998754

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.87  E-value=2.4e-19  Score=162.44  Aligned_cols=309  Identities=19%  Similarity=0.297  Sum_probs=221.2

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      .+.+++---++|++++|.-+.     .+.+|++..-|.+.+||++..+.    ....+..|.+.|....|-|....++++
T Consensus       236 il~sFk~d~g~VtslSFrtDG-----~p~las~~~~G~m~~wDLe~kkl----~~v~~nah~~sv~~~~fl~~epVl~ta  306 (910)
T KOG1539|consen  236 ILMSFKQDWGRVTSLSFRTDG-----NPLLASGRSNGDMAFWDLEKKKL----INVTRNAHYGSVTGATFLPGEPVLVTA  306 (910)
T ss_pred             EEEEEEccccceeEEEeccCC-----CeeEEeccCCceEEEEEcCCCee----eeeeeccccCCcccceecCCCceEeec
Confidence            344555334899999998764     47899999999999999987643    234445788899999999999999999


Q ss_pred             eCCCcEEEEEccCCc--eeeeEeeccccCCeeEEEEC-CCCcEEEEeeCCCcEEEEecCCCC---------------e--
Q 018675           93 SFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWN-ASGTLLATCGRDKSVWIWEVMPGN---------------E--  152 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~--~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~~~d~~v~vwd~~~~~---------------~--  152 (352)
                      +.|+.+++|-..+++  ...+....||..+..|+.|. .++.++.+++.|++++.+++....               .  
T Consensus       307 ~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~  386 (910)
T KOG1539|consen  307 GADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN  386 (910)
T ss_pred             cCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence            999999998544332  23344557999999999997 678899999999998887652100               0  


Q ss_pred             -e-------EE--------------------------E------------EEee-----cCccCeeEEEEcCCCCEEEEE
Q 018675          153 -F-------EC--------------------------V------------SVLQ-----GHAQDVKMVQWHPTMDVLFSC  181 (352)
Q Consensus       153 -~-------~~--------------------------~------------~~~~-----~h~~~v~~~~~~~~~~~l~s~  181 (352)
                       .       .+                          .            +.+.     .....+++++.++.|++.+.|
T Consensus       387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG  466 (910)
T KOG1539|consen  387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG  466 (910)
T ss_pred             ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe
Confidence             0       00                          0            0000     111357788899999999999


Q ss_pred             eCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC----CCCccc
Q 018675          182 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG----DGYASW  257 (352)
Q Consensus       182 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~  257 (352)
                      +..|.|-+|++...-.     ..++ ....+|..+|..|+....++.+++++.+|.+++||++...+...    ......
T Consensus       467 ~S~G~Id~fNmQSGi~-----r~sf-~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~i  540 (910)
T KOG1539|consen  467 YSKGTIDRFNMQSGIH-----RKSF-GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGI  540 (910)
T ss_pred             ccCCeEEEEEcccCee-----eccc-ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCccee
Confidence            9999999998765321     1112 12347999999999999999999999999999999864331110    000000


Q ss_pred             e---------------ee----------EEeecccCcceEEEEecCCce-EEecCCCCeEEEEEccCCccccCcccceee
Q 018675          258 R---------------HL----------CTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLL  311 (352)
Q Consensus       258 ~---------------~~----------~~~~~~~~~~i~~~~~~~~~~-~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~  311 (352)
                      .               .+          ....-.|.+.|..+++++++. +++++-|++|++|+.....+.+.       
T Consensus       541 v~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~-------  613 (910)
T KOG1539|consen  541 VYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG-------  613 (910)
T ss_pred             eeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee-------
Confidence            0               00          000123788899999999984 88999999999997654433321       


Q ss_pred             ecccccCcceeEEEecCCCcceEEEecCC-CeEEEEe
Q 018675          312 KKEKAHDMDVNSVQWSPGERRLLASASDD-GMIKIWE  347 (352)
Q Consensus       312 ~~~~~h~~~i~~~~~sp~~~~~l~s~~~D-g~i~iw~  347 (352)
                         .....+++.++|||+|. +|||+..| .-|.+|.
T Consensus       614 ---~~vd~~~~sls~SPngD-~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  614 ---LLVDSPCTSLSFSPNGD-FLATVHVDQNGIYLWS  646 (910)
T ss_pred             ---EecCCcceeeEECCCCC-EEEEEEecCceEEEEE
Confidence               12356789999999996 78999998 5588986

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.8e-20  Score=158.22  Aligned_cols=209  Identities=18%  Similarity=0.257  Sum_probs=160.3

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEE
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW  101 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~  101 (352)
                      +.|.|++-+|.      +.+++.|.-.+.+.+|.+.++..+.    .+ ..|-.+|+++.|+-||.+|+||+.||.+.+|
T Consensus        82 g~v~al~s~n~------G~~l~ag~i~g~lYlWelssG~LL~----v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW  150 (476)
T KOG0646|consen   82 GPVHALASSNL------GYFLLAGTISGNLYLWELSSGILLN----VL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVW  150 (476)
T ss_pred             cceeeeecCCC------ceEEEeecccCcEEEEEeccccHHH----HH-HhhccceeEEEEeCCCcEEEecCCCccEEEE
Confidence            56888888776      4567766699999999999885432    22 4577899999999999999999999999999


Q ss_pred             Ecc-------CCceeeeEeeccccCCeeEEEECCC--CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEc
Q 018675          102 EDV-------GGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH  172 (352)
Q Consensus       102 ~~~-------~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~  172 (352)
                      ...       +....+...+..|.-+|+.+...+.  ..+++|+|.|.++++||+..+...   ..+ .....+++++..
T Consensus       151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL---lti-~fp~si~av~lD  226 (476)
T KOG0646|consen  151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL---LTI-TFPSSIKAVALD  226 (476)
T ss_pred             EEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee---EEE-ecCCcceeEEEc
Confidence            742       2234567778899999999988664  358999999999999999766422   222 234578999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCC--CCC-----ceeEeeeeccCCCCcc--cEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          173 PTMDVLFSCSYDNTIKVWWAEDTD--SDN-----WHCVQTISESNNGHSS--TIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       173 ~~~~~l~s~~~d~~i~iw~~~~~~--~~~-----~~~~~~~~~~~~~h~~--~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      |-+..++.|+.+|.|.+.++....  ...     ...-.+-.....||.+  +|++|+++-||.+|++|+.||.+.|||.
T Consensus       227 pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  227 PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence            999999999999999887654422  110     0000111123457877  9999999999999999999999999997


Q ss_pred             Cc
Q 018675          244 DI  245 (352)
Q Consensus       244 ~~  245 (352)
                      ..
T Consensus       307 ~S  308 (476)
T KOG0646|consen  307 YS  308 (476)
T ss_pred             ch
Confidence            54

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.5e-20  Score=152.84  Aligned_cols=218  Identities=24%  Similarity=0.355  Sum_probs=146.2

Q ss_pred             EeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE--EE--EEeecCccCeeEEEEcCCCCE-EEEEeCCCc
Q 018675          112 ATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE--CV--SVLQGHAQDVKMVQWHPTMDV-LFSCSYDNT  186 (352)
Q Consensus       112 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~--~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~  186 (352)
                      .++++|.+.|++++|+.+|+.|+|++.|++|++|+++.-...+  ++  ..-.+|   .+.+.|.||-+- +++......
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh---pT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH---PTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC---ceEEEECCCcceEEEEEccCCE
Confidence            4678999999999999999999999999999999986432111  11  111123   467889998664 455666778


Q ss_pred             EEEEecCCCCCCCceeE-eeee--ccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEe
Q 018675          187 IKVWWAEDTDSDNWHCV-QTIS--ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTI  263 (352)
Q Consensus       187 i~iw~~~~~~~~~~~~~-~~~~--~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  263 (352)
                      +++|............. ..+.  +....|.-.|..+-.-..+.+|++++.|..|.+|+++-..++..+.          
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idt----------  226 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDT----------  226 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecc----------
Confidence            99996543222211100 0000  1123466777777777889999999999999999987333322111          


Q ss_pred             ecccCcceEEEEecCCc-eEEecCCCCeEEEEEcc--CCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCC
Q 018675          264 SGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES--KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD  340 (352)
Q Consensus       264 ~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~D  340 (352)
                         +....+..+.+|+| ++++++-.-.+++|..-  ++.-++.  ... ..++.||+..|+.++|||+.++ ++|.|.|
T Consensus       227 ---nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqe--v~r-vf~LkGH~saV~~~aFsn~S~r-~vtvSkD  299 (420)
T KOG2096|consen  227 ---NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQE--VKR-VFSLKGHQSAVLAAAFSNSSTR-AVTVSKD  299 (420)
T ss_pred             ---ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhh--hhh-hheeccchhheeeeeeCCCcce-eEEEecC
Confidence               11223445667877 56677777788999642  2111111  111 1256899999999999999887 6799999


Q ss_pred             CeEEEEeec
Q 018675          341 GMIKIWELA  349 (352)
Q Consensus       341 g~i~iw~~~  349 (352)
                      |++||||+.
T Consensus       300 G~wriwdtd  308 (420)
T KOG2096|consen  300 GKWRIWDTD  308 (420)
T ss_pred             CcEEEeecc
Confidence            999999974

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.87  E-value=4.1e-20  Score=162.86  Aligned_cols=130  Identities=25%  Similarity=0.438  Sum_probs=102.7

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCc-eeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS-RFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      +.+..|-+|.+.|+.+.|+|..     ..+|||||.|..|+||.+..+- +............+..|.++.|+|...-|+
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~-----D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil  144 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFA-----DELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGIL  144 (1012)
T ss_pred             cccceeecccceeeccCccccc-----hhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceE
Confidence            4555677999999999999965     3689999999999999986331 111122222222346789999999877677


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecC
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM  148 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~  148 (352)
                      ..+..|.++|||..++  +.+..+.+|...|.+..|+.||.+|++++.|+.|+|||-+
T Consensus       145 ~s~a~g~v~i~D~stq--k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPR  200 (1012)
T KOG1445|consen  145 ASGAHGSVYITDISTQ--KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR  200 (1012)
T ss_pred             EeccCceEEEEEcccC--ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCc
Confidence            6778899999998776  4567788999999999999999999999999999999854

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.3e-19  Score=145.77  Aligned_cols=290  Identities=16%  Similarity=0.253  Sum_probs=187.5

Q ss_pred             eEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEc
Q 018675           24 VWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWED  103 (352)
Q Consensus        24 V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  103 (352)
                      -.|+.|++-      |.+||.|..||.|-+||..+...     ...-..|-.+|.+++||++|+.|+|++.|..+.+||.
T Consensus        26 a~~~~Fs~~------G~~lAvGc~nG~vvI~D~~T~~i-----ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl   94 (405)
T KOG1273|consen   26 AECCQFSRW------GDYLAVGCANGRVVIYDFDTFRI-----ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDL   94 (405)
T ss_pred             cceEEeccC------cceeeeeccCCcEEEEEccccch-----hhhhhccccceeEEEecCCCCEeeeecCCceeEEEec
Confidence            568899985      68999999999999999987641     1122569999999999999999999999999999999


Q ss_pred             cCCceeeeEeeccccCCeeEEEECCC-CcEEEEeeCCCcEEEEecCCCCeeEEEEEee-c-CccCeeEEEEcCCCCEEEE
Q 018675          104 VGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQ-G-HAQDVKMVQWHPTMDVLFS  180 (352)
Q Consensus       104 ~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~l~s  180 (352)
                      ..+.  +...+. .+++|+.+.|+|- .+.++++-.+..-.+-++... ...++..-. + -.....+..|.+.++++++
T Consensus        95 ~~gs--~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~-~h~~Lp~d~d~dln~sas~~~fdr~g~yIit  170 (405)
T KOG1273|consen   95 LKGS--PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP-KHSVLPKDDDGDLNSSASHGVFDRRGKYIIT  170 (405)
T ss_pred             cCCC--ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC-ceeeccCCCccccccccccccccCCCCEEEE
Confidence            8775  344433 4689999999984 344555545554445554321 111111000 0 0011123357889999999


Q ss_pred             EeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC-ccccccCCCCcccee
Q 018675          181 CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD-ITRMQSGDGYASWRH  259 (352)
Q Consensus       181 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~  259 (352)
                      |...|.+.+++...     .+++......   -...|..+.++..|+.|+.-+.|..||.|++. +.........+   +
T Consensus       171 GtsKGkllv~~a~t-----~e~vas~rit---s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e---~  239 (405)
T KOG1273|consen  171 GTSKGKLLVYDAET-----LECVASFRIT---SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE---P  239 (405)
T ss_pred             ecCcceEEEEecch-----heeeeeeeec---hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC---h
Confidence            99999999996543     3444443211   13678899999999999999999999999865 11111100000   0


Q ss_pred             eEEeec-ccCcceEEEEecCCc-eEEecCC-CCeEEEEEccCCccccCcccceeeecccccC-cceeEEEecCCCcceEE
Q 018675          260 LCTISG-YHDRTIFSVHWSREG-IIASGAA-DDSVQFFVESKDDLIDGPSYKMLLKKEKAHD-MDVNSVQWSPGERRLLA  335 (352)
Q Consensus       260 ~~~~~~-~~~~~i~~~~~~~~~-~~~s~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~sp~~~~~l~  335 (352)
                      ..++.. .+...=.+++++.+| +++++++ .-.+++|..+.+.+         ++.++|-. ....++.|+|-. .+++
T Consensus       240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsL---------VKILhG~kgE~l~DV~whp~r-p~i~  309 (405)
T KOG1273|consen  240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSL---------VKILHGTKGEELLDVNWHPVR-PIIA  309 (405)
T ss_pred             hHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcce---------eeeecCCchhheeecccccce-eeee
Confidence            011100 011111234556665 5555553 34688897655433         22333443 567889999975 4677


Q ss_pred             EecCCCeEEEEeecc
Q 018675          336 SASDDGMIKIWELAN  350 (352)
Q Consensus       336 s~~~Dg~i~iw~~~~  350 (352)
                      +- +-|++.||.+..
T Consensus       310 si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  310 SI-ASGVVYIWAVVQ  323 (405)
T ss_pred             ec-cCCceEEEEeec
Confidence            66 689999998754

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.86  E-value=1.6e-19  Score=146.97  Aligned_cols=253  Identities=20%  Similarity=0.346  Sum_probs=191.6

Q ss_pred             ecceEEEEECCCCCEEEEEeCCCcEEEEEccCCc-eeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe
Q 018675           74 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE  152 (352)
Q Consensus        74 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~  152 (352)
                      ..+|+|-+|++|++.+|.+-....+.||...+.+ ++...++..|+..|+.|+|+|..+.|++|+.|+...||...++..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            3689999999999999999999999999988777 788899999999999999999999999999999999999877777


Q ss_pred             eEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE
Q 018675          153 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                      .++...+..++..++++.|+|.++.+++||.-+.|.+|+.+.  .+.|...+.+.   ..+.+.|.+++|+|++-+|++|
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~--ENdWWVsKhik---kPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ--ENDWWVSKHIK---KPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec--ccceehhhhhC---CccccceeeeeccCCcceeccc
Confidence            777777778889999999999999999999999999998764  33453333332   3467899999999999999999


Q ss_pred             eCCCcEEEEcCCccccccCCCCccceeeEEe------ecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCc
Q 018675          233 SDDLTIKIWGADITRMQSGDGYASWRHLCTI------SGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP  305 (352)
Q Consensus       233 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~  305 (352)
                      +.|+..|+|..-.+..........|...-.|      .....+.+..+.|+++| .|+=.+.|..+.+-+......    
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~----  240 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE----  240 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch----
Confidence            9999999998654443333322333211100      01235568888999876 788889999988875543210    


Q ss_pred             ccceeeecccccCcceeEEEecCCCcceEEEecCCC
Q 018675          306 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG  341 (352)
Q Consensus       306 ~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg  341 (352)
                          ..+....-..+..++.|-.+.  .++.+|+|.
T Consensus       241 ----~v~~~~~~~lP~ls~~~ise~--~vv~ag~~c  270 (361)
T KOG1523|consen  241 ----RVQSVATAQLPLLSVSWISEN--SVVAAGYDC  270 (361)
T ss_pred             ----hccchhhccCCceeeEeecCC--ceeecCCCC
Confidence                111111122667778886543  255677663

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=3.2e-20  Score=156.97  Aligned_cols=207  Identities=20%  Similarity=0.395  Sum_probs=157.5

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC-CCEEEEEeCC
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS-GKLLATASFD   95 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d   95 (352)
                      ..||++.|-++.|+-.-     ...|||||.|++|++||+.+++.    ...+ ..|.+.|.+++|.|. +..|++|+.|
T Consensus       239 ~~gHTdavl~Ls~n~~~-----~nVLaSgsaD~TV~lWD~~~g~p----~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D  308 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNF-----RNVLASGSADKTVKLWDVDTGKP----KSSI-THHGKKVQTLEWHPYEPSVLLSGSYD  308 (463)
T ss_pred             cccchHHHHHHHhcccc-----ceeEEecCCCceEEEEEcCCCCc----ceeh-hhcCCceeEEEecCCCceEEEecccc
Confidence            45899999999998753     47899999999999999998753    3333 358899999999984 6889999999


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT  174 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (352)
                      +++++.|.+... ..-..+ ...+.|..+.|.|... .++++..||+|+-+|++...  +++..+++|..+|.++++++.
T Consensus       309 ~~V~l~D~R~~~-~s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~  384 (463)
T KOG0270|consen  309 GTVALKDCRDPS-NSGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQ  384 (463)
T ss_pred             ceEEeeeccCcc-ccCceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCC
Confidence            999999986321 111122 2467899999998654 57788899999999998654  678889999999999999875


Q ss_pred             C-CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEcCC
Q 018675          175 M-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       175 ~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s~~~dg~i~iwd~~  244 (352)
                      - .++++++.|+.+++|++........+ .+.+      -.....|.++.|+-. .++.||..+.+++||+-
T Consensus       385 ~p~~l~t~s~d~~Vklw~~~~~~~~~v~-~~~~------~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  385 TPGLLSTASTDKVVKLWKFDVDSPKSVK-EHSF------KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF  449 (463)
T ss_pred             CCcceeeccccceEEEEeecCCCCcccc-cccc------cccceeecccCCCcceEEEecCccceEEEeecc
Confidence            4 46889999999999988765432211 1111      113366777788754 46778888899999864

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.85  E-value=5.8e-19  Score=157.56  Aligned_cols=292  Identities=18%  Similarity=0.306  Sum_probs=201.6

Q ss_pred             EEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC------C-----CCEEEEEeC
Q 018675           26 SLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP------S-----GKLLATASF   94 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~------~-----~~~l~s~~~   94 (352)
                      ++.|.|.      .+.|...-+|.++.+||+....+..++...+  .|..-|..+.--|      .     ..-++|++.
T Consensus       329 A~~Fdet------~~klscVYndhSlYvWDvrD~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs  400 (1080)
T KOG1408|consen  329 ACQFDET------TDKLSCVYNDHSLYVWDVRDVNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSS  400 (1080)
T ss_pred             EEEecCC------CceEEEEEcCceEEEEeccccccccceeeee--eccceeeeeccccccccCcccccCCccceeEecC
Confidence            4567765      3567777899999999998776655544433  2554444443222      1     124789999


Q ss_pred             CCcEEEEEccCCceeee-----------------------------------EeeccccCCeeEEEECCCCcEEEEeeCC
Q 018675           95 DATTCIWEDVGGDYECV-----------------------------------ATLEGHENEVKSVSWNASGTLLATCGRD  139 (352)
Q Consensus        95 d~~i~i~~~~~~~~~~~-----------------------------------~~~~~h~~~v~~v~~~~~~~~l~s~~~d  139 (352)
                      |++|++|+........+                                   ...-...-.+++++.+|+|++|++|..-
T Consensus       401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~  480 (1080)
T KOG1408|consen  401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG  480 (1080)
T ss_pred             CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence            99999998654211000                                   0000123468999999999999999999


Q ss_pred             CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC---CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCccc
Q 018675          140 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP---TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST  216 (352)
Q Consensus       140 ~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~  216 (352)
                      |+++|++++.-.   ......+|..+|.|+.|+-   ..++|++++.|+.|.+||+...    +.    +.+...+|...
T Consensus       481 GnlrVy~Lq~l~---~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn----y~----l~qtld~HSss  549 (1080)
T KOG1408|consen  481 GNLRVYDLQELE---YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN----YD----LVQTLDGHSSS  549 (1080)
T ss_pred             CceEEEEehhhh---hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc----cc----hhhhhcccccc
Confidence            999999996433   2345678999999999984   3568999999999999987543    22    23344689999


Q ss_pred             EEEEEEcCCC--CEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCC-ceEEecCCCCeEEE
Q 018675          217 IWALSFNAKG--DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQF  293 (352)
Q Consensus       217 i~~l~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~s~~~d~~v~~  293 (352)
                      |+++.|-..|  ..+++||.|..|.+-..+.    ...+....+...+   ....+++.++..|. ++++++++|..|++
T Consensus       550 ITsvKFa~~gln~~MiscGADksimFr~~qk----~~~g~~f~r~t~t---~~ktTlYDm~Vdp~~k~v~t~cQDrniri  622 (1080)
T KOG1408|consen  550 ITSVKFACNGLNRKMISCGADKSIMFRVNQK----ASSGRLFPRHTQT---LSKTTLYDMAVDPTSKLVVTVCQDRNIRI  622 (1080)
T ss_pred             eeEEEEeecCCceEEEeccCchhhheehhcc----ccCceeccccccc---cccceEEEeeeCCCcceEEEEecccceEE
Confidence            9999998877  7799999998775432211    1111111111111   12346778888775 58999999999999


Q ss_pred             EEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          294 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      |......+      ...++..++|.+..-.+...|.+- ++||...|+++.++|+..
T Consensus       623 f~i~sgKq------~k~FKgs~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~s  672 (1080)
T KOG1408|consen  623 FDIESGKQ------VKSFKGSRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFVS  672 (1080)
T ss_pred             Eeccccce------eeeecccccCCCceEEEEECCCcc-EEEEeecCCceEEEEecc
Confidence            96654322      123344578889999999999885 688888899999999854

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.85  E-value=3.6e-20  Score=159.00  Aligned_cols=244  Identities=21%  Similarity=0.339  Sum_probs=183.6

Q ss_pred             ceecceEEEEECCCCCEEEEEeCCCcEEEEEccC-CceeeeEeecc--ccCCeeEEEECCCCcEEEEeeCCCcEEEEecC
Q 018675           72 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG-GDYECVATLEG--HENEVKSVSWNASGTLLATCGRDKSVWIWEVM  148 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~-~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~  148 (352)
                      .|..-|.++..|...+++.||+. |-|+|||... +...++..+.+  ...-++++...|+|..|++|++-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            46677788889988889888864 7799999753 22234444443  34568999999999999999999999999985


Q ss_pred             CCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE
Q 018675          149 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK  228 (352)
Q Consensus       149 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~  228 (352)
                      .... .+...+......+..++.+||.+..+++-.||.|.|||+.+.         ++.....||+..+.||.++++|..
T Consensus       496 apTp-rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq---------~~VrqfqGhtDGascIdis~dGtk  565 (705)
T KOG0639|consen  496 APTP-RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ---------TLVRQFQGHTDGASCIDISKDGTK  565 (705)
T ss_pred             CCCc-chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc---------eeeecccCCCCCceeEEecCCCce
Confidence            4321 222333334456677899999999999999999999987653         223345699999999999999999


Q ss_pred             EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCccc
Q 018675          229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY  307 (352)
Q Consensus       229 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~  307 (352)
                      |=|||-|++||.||++..+...             ..-....|+++...|.+ -++.|..++.+.+...++.+       
T Consensus       566 lWTGGlDntvRcWDlregrqlq-------------qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-------  625 (705)
T KOG0639|consen  566 LWTGGLDNTVRCWDLREGRQLQ-------------QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-------  625 (705)
T ss_pred             eecCCCccceeehhhhhhhhhh-------------hhhhhhhheecccCCCccceeeecccCcEEEEecCCcc-------
Confidence            9999999999999987432210             00124468888888866 67888888888777554321       


Q ss_pred             ceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       308 ~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                         ..++.-|...|.++.|.+.|++ ++|.|.|..+..|.+..
T Consensus       626 ---kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtPy  664 (705)
T KOG0639|consen  626 ---KYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPY  664 (705)
T ss_pred             ---ceeecccccEEEEEEecccCce-eeecCchhhhhhccCcc
Confidence               2234568899999999999975 78999999999998753

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.84  E-value=1.8e-18  Score=140.95  Aligned_cols=218  Identities=18%  Similarity=0.347  Sum_probs=167.1

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEE
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTC   99 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   99 (352)
                      -.+.|+|.+|+++.      ..+|.+-+...|.||..... .+|.....+ ..|...|+.+.|+|..+.|++++.|..-.
T Consensus         9 ~~~pitchAwn~dr------t~iAv~~~~~evhiy~~~~~-~~w~~~htl-s~Hd~~vtgvdWap~snrIvtcs~drnay   80 (361)
T KOG1523|consen    9 LLEPITCHAWNSDR------TQIAVSPNNHEVHIYSMLGA-DLWEPAHTL-SEHDKIVTGVDWAPKSNRIVTCSHDRNAY   80 (361)
T ss_pred             ccCceeeeeecCCC------ceEEeccCCceEEEEEecCC-CCceeceeh-hhhCcceeEEeecCCCCceeEccCCCCcc
Confidence            35799999999984      68899889999999987543 334444444 46899999999999999999999999999


Q ss_pred             EEEc-cCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE-EEEEeecCccCeeEEEEcCCCCE
Q 018675          100 IWED-VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE-CVSVLQGHAQDVKMVQWHPTMDV  177 (352)
Q Consensus       100 i~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~  177 (352)
                      +|.. .++++.+..++.-++.++++|.|+|..+.|++||..+.|.||-....+..- ..++-+.+...|++++|+|+.-+
T Consensus        81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL  160 (361)
T KOG1523|consen   81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL  160 (361)
T ss_pred             ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence            9987 667777777888899999999999999999999999999999876544321 11222345567899999999999


Q ss_pred             EEEEeCCCcEEEEec--CCCCC----CCcee---EeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          178 LFSCSYDNTIKVWWA--EDTDS----DNWHC---VQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       178 l~s~~~d~~i~iw~~--~~~~~----~~~~~---~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      |++|+.|+..+++..  ...+.    ..|..   ...+..+.....+.|..+.|+|+|..|+=.+.|..+.+-|...
T Consensus       161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            999999999999842  11111    11110   1111111224567899999999999999999999999988643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.3e-18  Score=141.42  Aligned_cols=251  Identities=18%  Similarity=0.281  Sum_probs=165.1

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEE
Q 018675           77 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV  156 (352)
Q Consensus        77 v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  156 (352)
                      ..||.|++-|.+||+|..||.+.|||..+-.  ....+.+|..+|++++|+++|..|+|+|.|..+++||+..+...+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR--IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc--hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            7899999999999999999999999987643  34467899999999999999999999999999999999877643332


Q ss_pred             EEeecCccCeeEEEEcCCCCEEEEEe-CCCcEEEEecCCCCCCCceeEeeeeccCCCCc-ccEEEEEEcCCCCEEEEEeC
Q 018675          157 SVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHS-STIWALSFNAKGDKLVSCSD  234 (352)
Q Consensus       157 ~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~l~~~~~~~~l~s~~~  234 (352)
                         . ...+|+.+.|+|.....+.+. .+..-.+-++.+.   ...+   +.....+.. ....+..|++.|+|+++|..
T Consensus       104 ---r-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---~h~~---Lp~d~d~dln~sas~~~fdr~g~yIitGts  173 (405)
T KOG1273|consen  104 ---R-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---KHSV---LPKDDDGDLNSSASHGVFDRRGKYIITGTS  173 (405)
T ss_pred             ---E-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC---ceee---ccCCCccccccccccccccCCCCEEEEecC
Confidence               2 346899999999654333332 2222233333221   0011   111111111 11112358899999999999


Q ss_pred             CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccc--cCcccceee
Q 018675          235 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLI--DGPSYKMLL  311 (352)
Q Consensus       235 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~--~~~~~~~~~  311 (352)
                      .|.+.+++....+..         ..+.+.  ..+.|.++.++..+ .++..++|..|+.|+...-+..  +.....+..
T Consensus       174 KGkllv~~a~t~e~v---------as~rit--s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K  242 (405)
T KOG1273|consen  174 KGKLLVYDAETLECV---------ASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK  242 (405)
T ss_pred             cceEEEEecchheee---------eeeeec--hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHH
Confidence            999999987643221         111111  13457777777765 7889999999999976531111  000000001


Q ss_pred             ecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          312 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       312 ~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .+.........++.||.+|.++.++.+.-..+.||+-..
T Consensus       243 ~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~  281 (405)
T KOG1273|consen  243 LQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI  281 (405)
T ss_pred             HHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence            112223445778899999987776666677899998643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=1.2e-18  Score=142.21  Aligned_cols=281  Identities=21%  Similarity=0.332  Sum_probs=184.2

Q ss_pred             EEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCc-------eee-eeeeeeecceecceEEEEE-------CCCCCEEE
Q 018675           26 SLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS-------RFW-NCKAVLEEMHTRTVRSCAW-------SPSGKLLA   90 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~-------~~~-~~~~~~~~~h~~~v~~~~~-------s~~~~~l~   90 (352)
                      +..|+|+      +..|++-+.|..+++|++....       ... .....++......|+...|       .|+..++|
T Consensus        54 gckWSPD------GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a  127 (406)
T KOG2919|consen   54 GCKWSPD------GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA  127 (406)
T ss_pred             cceeCCC------CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence            4567886      6789999999999999864321       111 1111122222345666655       36678899


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCC---eeEEEECCCCcEEEEeeCCCcEEEEec-CCCCeeEEEEEee----cC
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENE---VKSVSWNASGTLLATCGRDKSVWIWEV-MPGNEFECVSVLQ----GH  162 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~---v~~v~~~~~~~~l~s~~~d~~v~vwd~-~~~~~~~~~~~~~----~h  162 (352)
                      +.+.|.-|.+||..+++..+......|..+   ..++.|+|||++|++| ..+.|+++|+ +++.......++.    +.
T Consensus       128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq  206 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ  206 (406)
T ss_pred             eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccc
Confidence            999999999999988876655444445544   4589999999999855 5688999998 5554322222221    12


Q ss_pred             ccCeeEEEEcCCCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC-CCcEEE
Q 018675          163 AQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-DLTIKI  240 (352)
Q Consensus       163 ~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~-dg~i~i  240 (352)
                      ..-+.+++|+|... +++.++....+-||.-...     ..++.+    .+|++.|+.|+|.++|+.|.+|.. |..|..
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-----~pl~ll----ggh~gGvThL~~~edGn~lfsGaRk~dkIl~  277 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-----RPLQLL----GGHGGGVTHLQWCEDGNKLFSGARKDDKILC  277 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCC-----Cceeee----cccCCCeeeEEeccCcCeecccccCCCeEEE
Confidence            44577889999655 8899999999988853221     122222    389999999999999999999875 789999


Q ss_pred             EcCCccccccCCCCccceeeEEeecccCcceEEEEecCC-ceEEecCCCCeEEEEEccCCccccCcccceeeecccccCc
Q 018675          241 WGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM  319 (352)
Q Consensus       241 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~  319 (352)
                      ||++..+..-.   ...+..    . ..+.-.-+...+. ..|++|+.+|.|++|+...-.        ........|+.
T Consensus       278 WDiR~~~~pv~---~L~rhv----~-~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--------n~~sv~~~~sd  341 (406)
T KOG2919|consen  278 WDIRYSRDPVY---ALERHV----G-DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--------NEVSVTGNYSD  341 (406)
T ss_pred             Eeehhccchhh---hhhhhc----c-CccceEEEecCCCCceeeccCCCccEEEEecCCCC--------Ccccccccccc
Confidence            99874321100   000000    0 0111112333444 489999999999999765311        11123456888


Q ss_pred             ceeEEEecCCCcceEEEecC
Q 018675          320 DVNSVQWSPGERRLLASASD  339 (352)
Q Consensus       320 ~i~~~~~sp~~~~~l~s~~~  339 (352)
                      .++.++++|-= .++||++.
T Consensus       342 ~vNgvslnP~m-pilatssG  360 (406)
T KOG2919|consen  342 TVNGVSLNPIM-PILATSSG  360 (406)
T ss_pred             cccceecCccc-ceeeeccC
Confidence            99999999974 57777764

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=2.7e-20  Score=173.98  Aligned_cols=209  Identities=22%  Similarity=0.349  Sum_probs=147.7

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeee-eeeeecceecceEEEEECCCCC-EEEEEeCCCcEE
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNC-KAVLEEMHTRTVRSCAWSPSGK-LLATASFDATTC   99 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~   99 (352)
                      .+-+.++|.+...- . .-++|.|..||.|.+|+...-...... .-.....|++.|..+.|++.+. .||+|+.||.|.
T Consensus        65 ~rF~kL~W~~~g~~-~-~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSH-S-HGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             ccceeeeecccCCC-c-cceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence            45678899885320 1 136899999999999987542100000 1112346999999999999765 999999999999


Q ss_pred             EEEccCCceeeeEee--ccccCCeeEEEECCC-CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCc--cCeeEEEEcCC
Q 018675          100 IWEDVGGDYECVATL--EGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA--QDVKMVQWHPT  174 (352)
Q Consensus       100 i~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~--~~v~~~~~~~~  174 (352)
                      |||...-+.  -.+.  ....+.|.+++|+.. ...|++++.++.+.|||++..+.   +-.+..+.  ..+..+.|||+
T Consensus       143 iWDlnn~~t--P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p---ii~ls~~~~~~~~S~l~WhP~  217 (1049)
T KOG0307|consen  143 IWDLNKPET--PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP---IIKLSDTPGRMHCSVLAWHPD  217 (1049)
T ss_pred             EeccCCcCC--CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc---ccccccCCCccceeeeeeCCC
Confidence            999865321  1222  234578999999875 44688999999999999986543   22233233  23668899998


Q ss_pred             CC-EEEEEeCCC---cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEcCCc
Q 018675          175 MD-VLFSCSYDN---TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       175 ~~-~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~s~~~dg~i~iwd~~~  245 (352)
                      .. .+++++.|.   .|.+||++....-    .    ....+|+..|.+|.|++.+ ++|+|++.|++|.+|+.+.
T Consensus       218 ~aTql~~As~dd~~PviqlWDlR~assP----~----k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  218 HATQLLVASGDDSAPVIQLWDLRFASSP----L----KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             CceeeeeecCCCCCceeEeecccccCCc----h----hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence            64 566776654   6899988765321    1    1224799999999999976 8899999999999997653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.2e-19  Score=157.91  Aligned_cols=216  Identities=23%  Similarity=0.386  Sum_probs=163.1

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCc----eeeeeeeeeecceecceEEEEECCCCCE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS----RFWNCKAVLEEMHTRTVRSCAWSPSGKL   88 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~   88 (352)
                      .-.++..|.+.|..+.|+|..      +.|++|+.|+++++|+++...    ....+...+ ..|.++|.|+.+.+++..
T Consensus       286 ik~tl~s~~d~ir~l~~~~se------p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n~~~  358 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSE------PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSNGEH  358 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCC------CeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCCceE
Confidence            334788999999999999974      689999999999999983311    111112222 469999999999999999


Q ss_pred             EEEEeCCCcEEEEEccC--------CceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe--eE----
Q 018675           89 LATASFDATTCIWEDVG--------GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE--FE----  154 (352)
Q Consensus        89 l~s~~~d~~i~i~~~~~--------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~--~~----  154 (352)
                      +.+|+-||+|+.|+...        ........+.||.+.|+.+++++....|++|+.||+++.|.......  +.    
T Consensus       359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e  438 (577)
T KOG0642|consen  359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKE  438 (577)
T ss_pred             EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccc
Confidence            99999999999994321        11123456789999999999999999999999999999998643322  00    


Q ss_pred             -----------------------------------EEEEeec-------CccCeeEEEEcCCCCEEEEEeCCCcEEEEec
Q 018675          155 -----------------------------------CVSVLQG-------HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA  192 (352)
Q Consensus       155 -----------------------------------~~~~~~~-------h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~  192 (352)
                                                         .+..+..       ....+..+.++|+..+.+++.+|+.|++++.
T Consensus       439 ~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn  518 (577)
T KOG0642|consen  439 HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN  518 (577)
T ss_pred             cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc
Confidence                                               0000000       0123556778899999999999999999965


Q ss_pred             CCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      ....         +.....+|...+.++++.|+|.+|++++.|+.+++|.++
T Consensus       519 ~~~~---------~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  519 KTGK---------ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             cccc---------cchheeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence            4321         122334688899999999999999999999999999764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.83  E-value=1.1e-18  Score=153.93  Aligned_cols=255  Identities=20%  Similarity=0.288  Sum_probs=174.3

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC-CEEEEEe
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG-KLLATAS   93 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~   93 (352)
                      .....|.+.|..+.|-|-+      ..|+++++|.++++||+........   .+...|...|.+++|.|.. ..+++|+
T Consensus        94 k~~~aH~nAifDl~wapge------~~lVsasGDsT~r~Wdvk~s~l~G~---~~~~GH~~SvkS~cf~~~n~~vF~tGg  164 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGE------SLLVSASGDSTIRPWDVKTSRLVGG---RLNLGHTGSVKSECFMPTNPAVFCTGG  164 (720)
T ss_pred             cccccccceeEeeccCCCc------eeEEEccCCceeeeeeeccceeecc---eeecccccccchhhhccCCCcceeecc
Confidence            3455799999999999943      5899999999999999987643211   1335699999999999965 5688999


Q ss_pred             CCCcEEEEEccCCce------------------ee-------eEeeccccCCeeE---EEECCCCcEEEEeeC-CCcEEE
Q 018675           94 FDATTCIWEDVGGDY------------------EC-------VATLEGHENEVKS---VSWNASGTLLATCGR-DKSVWI  144 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~------------------~~-------~~~~~~h~~~v~~---v~~~~~~~~l~s~~~-d~~v~v  144 (352)
                      .||.+.|||..-...                  .+       +.....+...|.+   +.+..|...|+++|. |+.|+|
T Consensus       165 RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKV  244 (720)
T KOG0321|consen  165 RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKV  244 (720)
T ss_pred             CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEE
Confidence            999999999642210                  00       1112234445555   556678889999988 999999


Q ss_pred             EecCCCCe---eEEE--EEeecC---ccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcc-
Q 018675          145 WEVMPGNE---FECV--SVLQGH---AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS-  215 (352)
Q Consensus       145 wd~~~~~~---~~~~--~~~~~h---~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~-  215 (352)
                      ||++....   .+..  ..+.-|   ...+.++.....|.+|++...|+.|.+|++........       ....++.. 
T Consensus       245 WDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~-------~~~sg~~~~  317 (720)
T KOG0321|consen  245 WDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV-------AEFSGKLNS  317 (720)
T ss_pred             EeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch-------hhccCcccc
Confidence            99964321   1111  112222   23466777777788887777799999998766432211       11112211 


Q ss_pred             --cEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeE
Q 018675          216 --TIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSV  291 (352)
Q Consensus       216 --~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v  291 (352)
                        .+. -..+|++.++++|+.|....+|.+......           ..+...|...++.+.|.+..  -+++++.|-.+
T Consensus       318 sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~-----------~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~  385 (720)
T KOG0321|consen  318 SFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSPEAP-----------PALLLGHTREVTTVRWLPSATTPVATCSDDFRV  385 (720)
T ss_pred             eeeee-eecCCCCceEeccCCCcceeeeeecCccCC-----------hhhhhCcceEEEEEeeccccCCCceeeccCcce
Confidence              122 246899999999999999999976532211           11122467778999998864  58888999999


Q ss_pred             EEEEcc
Q 018675          292 QFFVES  297 (352)
Q Consensus       292 ~~~~~~  297 (352)
                      ++|...
T Consensus       386 kiW~l~  391 (720)
T KOG0321|consen  386 KIWRLS  391 (720)
T ss_pred             EEEecc
Confidence            999764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=5.3e-19  Score=156.76  Aligned_cols=241  Identities=21%  Similarity=0.382  Sum_probs=175.3

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..+++|+||++.|+|++|+.+      ++.||||+.|+.|.+|+..-       ...++..|...|.|+.|+|-...|++
T Consensus        44 ~llqtLKgHKDtVycVAys~d------GkrFASG~aDK~VI~W~~kl-------EG~LkYSH~D~IQCMsFNP~~h~Las  110 (1081)
T KOG1538|consen   44 TLLQPLKGHKDTVYCVAYAKD------GKRFASGSADKSVIIWTSKL-------EGILKYSHNDAIQCMSFNPITHQLAS  110 (1081)
T ss_pred             ccccccccccceEEEEEEccC------CceeccCCCceeEEEecccc-------cceeeeccCCeeeEeecCchHHHhhh
Confidence            456789999999999999987      68999999999999997542       33455679999999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      ++-. ..-+|......   +.. ......+.+++|..||++|+-|-.||+|.+-+-. +.+...+....+..++|.+++|
T Consensus       111 CsLs-dFglWS~~qK~---V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~  184 (1081)
T KOG1538|consen  111 CSLS-DFGLWSPEQKS---VSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICW  184 (1081)
T ss_pred             cchh-hccccChhhhh---HHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEe
Confidence            8754 34567543211   111 1224578899999999999999999999998643 3333334444567789999999


Q ss_pred             cCCC-----CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          172 HPTM-----DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       172 ~~~~-----~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      +|..     ..+++.....++.+|.+.....+          .....+-...++.+.++|+|++.||.|+.+++|.-+..
T Consensus       185 ~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig----------k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv  254 (1081)
T KOG1538|consen  185 NPSSGEGRNDILAVADWGQTLSFYQLSGKQIG----------KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV  254 (1081)
T ss_pred             cCCCCCCccceEEEEeccceeEEEEecceeec----------ccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe
Confidence            9852     46777788888888765443211          00112234557899999999999999999999953321


Q ss_pred             ccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEE
Q 018675          247 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFF  294 (352)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~  294 (352)
                      ++            .++ +-.+..|+++...|++ +++.|+.||++..|
T Consensus       255 rL------------GTv-g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy  290 (1081)
T KOG1538|consen  255 RL------------GTV-GEQDSWIWTVQAKPNSQYVVVGCQDGTIACY  290 (1081)
T ss_pred             EE------------eec-cccceeEEEEEEccCCceEEEEEccCeeehh
Confidence            11            111 1134567788778865 78999999999876

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.82  E-value=8.5e-19  Score=139.22  Aligned_cols=258  Identities=19%  Similarity=0.258  Sum_probs=175.9

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      .+...|++|...|+|+.|..+       .+|++|..-|.|++|.+.+...    ...++..|...|+.+.--|+ ..+.+
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~-------~rL~sg~~~G~V~~w~lqt~r~----~~~~r~~g~~~it~lq~~p~-d~l~t   72 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQAN-------ERLMSGLSVGIVKMWVLQTERD----LPLIRLFGRLFITNLQSIPN-DSLDT   72 (323)
T ss_pred             CCeeEeccccchheehhhccc-------hhhhcccccceEEEEEeecCcc----chhhhhhccceeeceeecCC-cchhh
Confidence            345678899999999999875       4699999999999999987643    22333356778888877776 55677


Q ss_pred             EeCCCcEEEEEccCCceeee-----------------------------------------------Eee----ccccCC
Q 018675           92 ASFDATTCIWEDVGGDYECV-----------------------------------------------ATL----EGHENE  120 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~-----------------------------------------------~~~----~~h~~~  120 (352)
                      -+.|..+.+|+...+....+                                               ...    .+..+.
T Consensus        73 qgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgs  152 (323)
T KOG0322|consen   73 QGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGS  152 (323)
T ss_pred             cCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCc
Confidence            77888888887543211000                                               000    011234


Q ss_pred             eeEEEECC-CCc--EEEEeeCCCcEEEEecCCCCe-------eEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          121 VKSVSWNA-SGT--LLATCGRDKSVWIWEVMPGNE-------FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW  190 (352)
Q Consensus       121 v~~v~~~~-~~~--~l~s~~~d~~v~vwd~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw  190 (352)
                      ++|..|.- .+.  ++++|=++|.+.+||+..+..       .+.+.....|.+++.++.+.+.-..=++|+.+..+.+|
T Consensus       153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~  232 (323)
T KOG0322|consen  153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY  232 (323)
T ss_pred             eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence            56666532 222  466777899999999876421       12334456799999999998765555778888888898


Q ss_pred             ecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcc
Q 018675          191 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT  270 (352)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (352)
                      .+.... .......++.-    -...|..+.+.||++.+||+|.|++||||..+..+                       
T Consensus       233 Sl~~s~-gslq~~~e~~l----knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-----------------------  284 (323)
T KOG0322|consen  233 SLNHST-GSLQIRKEITL----KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-----------------------  284 (323)
T ss_pred             eecccc-CcccccceEEe----cCCCccceEEccCCcEEeecccCCcEEEEEeccCC-----------------------
Confidence            765431 11111111111    12457778999999999999999999999643110                       


Q ss_pred             eEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          271 IFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       271 i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                                                             .+..+..|.+.|++++|+|+.. ++|++|.|++|.+|+++
T Consensus       285 ---------------------------------------pLAVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkLY  323 (323)
T KOG0322|consen  285 ---------------------------------------PLAVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKLY  323 (323)
T ss_pred             ---------------------------------------chhhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeecC
Confidence                                                   0112346889999999999864 79999999999999974

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.5e-18  Score=141.19  Aligned_cols=286  Identities=15%  Similarity=0.239  Sum_probs=179.9

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC--CCCEEEEEeCCCcEEEEEccCCceeeeEeeccc
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP--SGKLLATASFDATTCIWEDVGGDYECVATLEGH  117 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h  117 (352)
                      ..+|++-..|+|++|++.+++.+-.+     +.+...++.+.|..  .+..+.+|+.||+|++||.+...........++
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~f-----k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~  115 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEF-----KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ  115 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhee-----cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC
Confidence            45777788999999999886432222     34667777888866  457788999999999999876554555555666


Q ss_pred             c-CCeeEEEECCCCcEEEEee----CCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCC-CEEEEEeCCCcEEEEe
Q 018675          118 E-NEVKSVSWNASGTLLATCG----RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWW  191 (352)
Q Consensus       118 ~-~~v~~v~~~~~~~~l~s~~----~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~  191 (352)
                      . .+..|++.+-.++.+++|.    .|-.|.+||++...+. .......|...|+++.|+|.. ++|++||.||.+.+||
T Consensus       116 ~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD  194 (376)
T KOG1188|consen  116 SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD  194 (376)
T ss_pred             CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch-hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence            5 3566777666677777764    4678999999865431 112345799999999999964 5899999999999999


Q ss_pred             cCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEcCCccccccCCCCc------cceeeEEee
Q 018675          192 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADITRMQSGDGYA------SWRHLCTIS  264 (352)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~  264 (352)
                      +...+.+. ...+.+     .|...|..+.|..++ +.+.+-+..++..+|+++-.......+..      .|+...   
T Consensus       195 ~~~d~EeD-aL~~vi-----N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~---  265 (376)
T KOG1188|consen  195 TKKDNEED-ALLHVI-----NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDN---  265 (376)
T ss_pred             cCCCcchh-hHHHhh-----cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhh---
Confidence            86642221 111122     367789999998876 45778889999999988643211100000      000000   


Q ss_pred             cccCcceEEEEecCCceEEecCC-CCeEEEEEcc---CCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCC
Q 018675          265 GYHDRTIFSVHWSREGIIASGAA-DDSVQFFVES---KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD  340 (352)
Q Consensus       265 ~~~~~~i~~~~~~~~~~~~s~~~-d~~v~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~D  340 (352)
                        ...-|-.......+..+.++. -+...++-..   .....     ..+....-+|..-|.++.|...+ .++.|||+|
T Consensus       266 --~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~-----~~~a~l~g~~~eiVR~i~~~~~~-~~l~TGGED  337 (376)
T KOG1188|consen  266 --CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLL-----TEPAILQGGHEEIVRDILFDVKN-DVLYTGGED  337 (376)
T ss_pred             --hhheeecccCCCcceEEEeccccCceeEEEeeeccccccc-----CccccccCCcHHHHHHHhhhccc-ceeeccCCC
Confidence              001111111122233333333 4444443221   11111     11111123477778888887655 478899999


Q ss_pred             CeEEEEee
Q 018675          341 GMIKIWEL  348 (352)
Q Consensus       341 g~i~iw~~  348 (352)
                      |.+.+|..
T Consensus       338 G~l~~Wk~  345 (376)
T KOG1188|consen  338 GLLQAWKV  345 (376)
T ss_pred             ceEEEEec
Confidence            99999985

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.81  E-value=1.5e-17  Score=133.94  Aligned_cols=267  Identities=21%  Similarity=0.312  Sum_probs=179.9

Q ss_pred             ceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeC----CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC
Q 018675           10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSG----DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS   85 (352)
Q Consensus        10 ~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~----D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~   85 (352)
                      +.+++.+++.+ -.++++.|+....   ....+|-||-    .+.|.|-.+............  ..|..+++.+.|.|+
T Consensus        34 r~~eiy~Y~ap-~~lya~~Ws~~~~---~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~--fd~~YP~tK~~wiPd  107 (364)
T KOG0290|consen   34 RRKEIYTYNAP-WPLYAMNWSVRPD---KKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN--FDHPYPVTKLMWIPD  107 (364)
T ss_pred             ccceEEEecCC-CceeeeccccCCC---cceeEEEeeeccccCCeeEEEEEccCCCceeccCC--CCCCCCccceEecCC
Confidence            34566677654 4788999985321   1456777763    356666655432221122211  358889999999997


Q ss_pred             C-----CEEEEEeCCCcEEEEEccC--CceeeeEee-----ccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCe
Q 018675           86 G-----KLLATASFDATTCIWEDVG--GDYECVATL-----EGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNE  152 (352)
Q Consensus        86 ~-----~~l~s~~~d~~i~i~~~~~--~~~~~~~~~-----~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~  152 (352)
                      .     ++|||.+  ..+++|....  .+..+...+     ..+..+++++.|+. +.+++.++|-|-+..|||+..+..
T Consensus       108 ~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~  185 (364)
T KOG0290|consen  108 SKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS  185 (364)
T ss_pred             ccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc
Confidence            6     3566554  5799997652  222222222     24567899999986 678999999999999999977533


Q ss_pred             eEEEEEeecCccCeeEEEEcCCC-CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC-CCEEE
Q 018675          153 FECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLV  230 (352)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~  230 (352)
                      .....-+-+|..+|-.++|...+ ..+++.+.||.++++|++..+..      ++.-+...-..+...|+|++. -+|+|
T Consensus       186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS------TIIYE~p~~~~pLlRLswnkqDpnymA  259 (364)
T KOG0290|consen  186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS------TIIYEDPSPSTPLLRLSWNKQDPNYMA  259 (364)
T ss_pred             cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc------eEEecCCCCCCcceeeccCcCCchHHh
Confidence            33344567899999999998754 47899999999999998764321      111111111346667777764 44566


Q ss_pred             EEeCC-CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccce
Q 018675          231 SCSDD-LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKM  309 (352)
Q Consensus       231 s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~  309 (352)
                      +-..| ..|.|-|++..                                                             ..
T Consensus       260 Tf~~dS~~V~iLDiR~P-------------------------------------------------------------~t  278 (364)
T KOG0290|consen  260 TFAMDSNKVVILDIRVP-------------------------------------------------------------CT  278 (364)
T ss_pred             hhhcCCceEEEEEecCC-------------------------------------------------------------Cc
Confidence            54433 34555554321                                                             12


Q ss_pred             eeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       310 ~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      .+.++.+|.+.|++++|.|..+..|+|+|+|..+.|||+..+
T Consensus       279 pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  279 PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            233567899999999999999889999999999999999765

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=2.2e-18  Score=147.93  Aligned_cols=265  Identities=18%  Similarity=0.287  Sum_probs=187.5

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE  102 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  102 (352)
                      .++++.|....     .-..++.+.|+.+++|.......  . ...+++.....-.|++......++++|+..+.++|||
T Consensus        36 g~~s~~w~~~n-----~lvvas~~gdk~~~~~~K~g~~~--~-Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwd  107 (673)
T KOG4378|consen   36 GDFSFNWQRRN-----FLVVASMAGDKVMRIKEKDGKTP--E-VPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWD  107 (673)
T ss_pred             cceeeeccccc-----eEEEeecCCceeEEEecccCCCC--c-cceeeccccchHHHHhhhhcceeeeccCcCceeeehh
Confidence            48889998752     13455667899999997654311  0 1112222223445555555668999999999999999


Q ss_pred             ccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec-CccCeeEEEEcCCCCE-EEE
Q 018675          103 DVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG-HAQDVKMVQWHPTMDV-LFS  180 (352)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~-l~s  180 (352)
                      ....  .+...+++|...|+++.++...++|++++..|-|.+..+..+...   ..+.. ..+.++-+.|+|..+. |.+
T Consensus       108 l~~k--l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t---t~f~~~sgqsvRll~ys~skr~lL~~  182 (673)
T KOG4378|consen  108 LRAK--LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT---TTFTIDSGQSVRLLRYSPSKRFLLSI  182 (673)
T ss_pred             hHHH--HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc---cceecCCCCeEEEeecccccceeeEe
Confidence            8743  345567899999999999999999999999999999988654322   22222 2345678999998764 668


Q ss_pred             EeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEcCCccccccCCCCcccee
Q 018675          181 CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRH  259 (352)
Q Consensus       181 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  259 (352)
                      ++.+|.|.+||+.....        +......|..+...++|+|... +|++.|-|..|.+||....+..          
T Consensus       183 asd~G~VtlwDv~g~sp--------~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~----------  244 (673)
T KOG4378|consen  183 ASDKGAVTLWDVQGMSP--------IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST----------  244 (673)
T ss_pred             eccCCeEEEEeccCCCc--------ccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc----------
Confidence            89999999998765311        1122346889999999999754 6778999999999997633211          


Q ss_pred             eEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCC
Q 018675          260 LCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG  329 (352)
Q Consensus       260 ~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~  329 (352)
                       .++.  -+.++.+++|.+.| +|++|...|.+..|+....        +..+.....|...|++++|-|.
T Consensus       245 -~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~--------k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  245 -DRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST--------KAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             -ceee--ecCCcceeeecCCceEEEeecCCceEEEEecccC--------CCCceEeeecccceeEEEeeec
Confidence             1111  23457788999987 6888999999999965431        2233456789999999999874

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=1.8e-17  Score=135.61  Aligned_cols=271  Identities=23%  Similarity=0.369  Sum_probs=179.9

Q ss_pred             cccCCccceeeeeee--cCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEE
Q 018675            3 FLDDGNYELREIQTL--EGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSC   80 (352)
Q Consensus         3 ~~~~~~~~~~~~~~~--~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~   80 (352)
                      ++.|+..  ..++++  +.|.+.-+-++|+-+.. + ..+++|.+|.-|.|||.|..+...    ..-+ ..|..+|+.+
T Consensus        71 c~~d~~i--r~lq~y~D~d~~Esfytcsw~yd~~-~-~~p~la~~G~~GvIrVid~~~~~~----~~~~-~ghG~sINei  141 (385)
T KOG1034|consen   71 CPGDGGI--RLLQSYADEDHDESFYTCSWSYDSN-T-GNPFLAAGGYLGVIRVIDVVSGQC----SKNY-RGHGGSINEI  141 (385)
T ss_pred             ECCccce--eeeeeccCCCCCcceEEEEEEecCC-C-CCeeEEeecceeEEEEEecchhhh----ccce-eccCccchhh
Confidence            3444432  344444  24778888889986532 1 247899999999999999876542    1112 3588999999


Q ss_pred             EECCCC-CEEEEEeCCCcEEEEEccCCceeeeEe---eccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe---e
Q 018675           81 AWSPSG-KLLATASFDATTCIWEDVGGDYECVAT---LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE---F  153 (352)
Q Consensus        81 ~~s~~~-~~l~s~~~d~~i~i~~~~~~~~~~~~~---~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~---~  153 (352)
                      .|.|+. +++++++.|.++++|+..+..  ++..   +.+|.+.|.++.|+++|.+|+++|.|.++++|++.....   .
T Consensus       142 k~~p~~~qlvls~SkD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~l  219 (385)
T KOG1034|consen  142 KFHPDRPQLVLSASKDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKL  219 (385)
T ss_pred             hcCCCCCcEEEEecCCceEEEEeccCCe--EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhh
Confidence            999965 789999999999999988763  4444   478999999999999999999999999999999862110   0


Q ss_pred             EEE----------------------EEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeE------ee
Q 018675          154 ECV----------------------SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCV------QT  205 (352)
Q Consensus       154 ~~~----------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~------~~  205 (352)
                      ++.                      .+-.-|...|-|+.|.  ++++++=|-++.|..|....-.. .+..+      .+
T Consensus       220 E~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e-~~~~vkp~es~~T  296 (385)
T KOG1034|consen  220 ELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEE-SIHNVKPPESATT  296 (385)
T ss_pred             hhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhh-hhhccCCCcccee
Confidence            000                      0111244445555554  46788888899999997632111 11100      11


Q ss_pred             eeccCCCCcccEEEEEE--cCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eE
Q 018675          206 ISESNNGHSSTIWALSF--NAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II  282 (352)
Q Consensus       206 ~~~~~~~h~~~i~~l~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  282 (352)
                      +....+-....|+-+.|  +|-++.||.|...|.+.+||++.....     ......+   ......|...+++.++ .+
T Consensus       297 i~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~-----~~ttl~~---s~~~~tVRQ~sfS~dgs~l  368 (385)
T KOG1034|consen  297 ILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP-----KCTTLTH---SKSGSTVRQTSFSRDGSIL  368 (385)
T ss_pred             eeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-----cCceEEe---ccccceeeeeeecccCcEE
Confidence            11111122345666654  566889999999999999998643221     0001111   1234567788888877 67


Q ss_pred             EecCCCCeEEEEE
Q 018675          283 ASGAADDSVQFFV  295 (352)
Q Consensus       283 ~s~~~d~~v~~~~  295 (352)
                      +..+.|++|.-|+
T Consensus       369 v~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  369 VLVCDDGTVWRWD  381 (385)
T ss_pred             EEEeCCCcEEEEE
Confidence            7888888887774

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.2e-16  Score=146.02  Aligned_cols=310  Identities=15%  Similarity=0.198  Sum_probs=206.2

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCC-CceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCc
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSA-SSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDAT   97 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   97 (352)
                      .|+..++|.+++|.      +.++|++-.||.|.+|.--. ...-.++  ..-.=|...|++++|+++|.+|.+|+..+.
T Consensus       203 ~Htf~~t~~~~spn------~~~~Aa~d~dGrI~vw~d~~~~~~~~t~--t~lHWH~~~V~~L~fS~~G~~LlSGG~E~V  274 (792)
T KOG1963|consen  203 HHTFNITCVALSPN------ERYLAAGDSDGRILVWRDFGSSDDSETC--TLLHWHHDEVNSLSFSSDGAYLLSGGREGV  274 (792)
T ss_pred             hhcccceeEEeccc------cceEEEeccCCcEEEEeccccccccccc--eEEEecccccceeEEecCCceEeecccceE
Confidence            47778899999997      46899999999999995322 1111111  111236679999999999999999999999


Q ss_pred             EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec--------CccCeeEE
Q 018675           98 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG--------HAQDVKMV  169 (352)
Q Consensus        98 i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--------h~~~v~~~  169 (352)
                      +.+|...++..+.   +.--.++|..+.++|+++..+....|+.|.+-.+..-.....+..+..        ...-.+.+
T Consensus       275 Lv~Wq~~T~~kqf---LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~  351 (792)
T KOG1963|consen  275 LVLWQLETGKKQF---LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV  351 (792)
T ss_pred             EEEEeecCCCccc---ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence            9999988775332   233357899999999999999999999999876532111101111110        12234567


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeee-ccCC---CCcccEEEEEEcCCCCEEEEEeC--------C--
Q 018675          170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS-ESNN---GHSSTIWALSFNAKGDKLVSCSD--------D--  235 (352)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~~---~h~~~i~~l~~~~~~~~l~s~~~--------d--  235 (352)
                      .+.|.-..++-.+.-+.|.+|++......  +..+... ...+   .+.-.+.++..+..|.+++|.-.        |  
T Consensus       352 ~idpr~~~~vln~~~g~vQ~ydl~td~~i--~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e  429 (792)
T KOG1963|consen  352 SIDPRTNSLVLNGHPGHVQFYDLYTDSTI--YKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGE  429 (792)
T ss_pred             EEcCCCCceeecCCCceEEEEecccccee--eeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCce
Confidence            78886666777888999999987653221  1111111 1111   23456778888888999888742        2  


Q ss_pred             CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC--Cc-eEEecCCCCeEEEEEccCCc-cccCcccceee
Q 018675          236 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EG-IIASGAADDSVQFFVESKDD-LIDGPSYKMLL  311 (352)
Q Consensus       236 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~~~s~~~d~~v~~~~~~~~~-~~~~~~~~~~~  311 (352)
                      -.+|+|..+.       ..+.|.....+...|+......++.+  .. +.++++.||.+++|...... .........+.
T Consensus       430 ~~LKFW~~n~-------~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~  502 (792)
T KOG1963|consen  430 VSLKFWQYNP-------NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCK  502 (792)
T ss_pred             EEEEEEEEcC-------CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEe
Confidence            3678885431       22455555666666776666555443  23 88999999999999874321 11111112222


Q ss_pred             ecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          312 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       312 ~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .....|..++++++|+.||.  ++++|.|++|.|||..+
T Consensus       503 ~i~sy~k~~i~a~~fs~dGs--lla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  503 AIGSYHKTPITALCFSQDGS--LLAVSFDDTITIWDYDT  539 (792)
T ss_pred             eeeccccCcccchhhcCCCc--EEEEecCCEEEEecCCC
Confidence            22234889999999999995  44799999999999865

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=1.6e-15  Score=137.36  Aligned_cols=296  Identities=31%  Similarity=0.549  Sum_probs=205.6

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEE-CCCCC-EEEEEe
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAW-SPSGK-LLATAS   93 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~-~l~s~~   93 (352)
                      .+.+|...|.++.+.+.      +..++.++.|+.+.+|+.......   ...+...+...+..+.+ ++++. .++..+
T Consensus        60 ~~~~~~~~i~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (466)
T COG2319          60 LLRGHEDSITSIAFSPD------GELLLSGSSDGTIKLWDLDNGEKL---IKSLEGLHDSSVSKLALSSPDGNSILLASS  130 (466)
T ss_pred             eeeeccceEEEEEECCC------CcEEEEecCCCcEEEEEcCCCcee---EEEEeccCCCceeeEEEECCCcceEEeccC
Confidence            45689999999999986      467888889999999998766411   11111112135666666 88887 555544


Q ss_pred             C-CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-CCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           94 F-DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        94 ~-d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      . |+.+.+|+... .......+..|...|..+.|+|++..+++++. |+.+++|++...   ..+..+.+|...+.+++|
T Consensus       131 ~~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~  206 (466)
T COG2319         131 SLDGTVKLWDLST-PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG---KPLSTLAGHTDPVSSLAF  206 (466)
T ss_pred             CCCccEEEEEecC-CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC---ceEEeeccCCCceEEEEE
Confidence            4 99999998765 12345667789999999999999998888885 999999998653   345566678999999999


Q ss_pred             cCCCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          172 HPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       172 ~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      +|++. .+++++.|+.+++|+....     .....   ...+|.... ...|+|++.++++++.|+.+++|+......  
T Consensus       207 ~~~~~~~~~~~~~d~~i~~wd~~~~-----~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--  275 (466)
T COG2319         207 SPDGGLLIASGSSDGTIRLWDLSTG-----KLLRS---TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--  275 (466)
T ss_pred             cCCcceEEEEecCCCcEEEEECCCC-----cEEee---ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--
Confidence            99987 5555599999999965411     12221   233566654 338999998999999999999998753211  


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecC-CceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCC
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG  329 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~  329 (352)
                              ..... ..|...+..+.+.+ ...+++++.|+.+.+|+.......     ....  ...|...+..+.|.++
T Consensus       276 --------~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~  339 (466)
T COG2319         276 --------LLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL-----SSLT--LKGHEGPVSSLSFSPD  339 (466)
T ss_pred             --------EEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceE-----EEee--ecccCCceEEEEECCC
Confidence                    11111 23567788888888 456777888888899954332111     1110  2467778999999433


Q ss_pred             CcceEEEecCCCeEEEEeeccC
Q 018675          330 ERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       330 ~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      +..+..++..|+.+++|++...
T Consensus       340 ~~~~~~~~~~d~~~~~~~~~~~  361 (466)
T COG2319         340 GSLLVSGGSDDGTIRLWDLRTG  361 (466)
T ss_pred             CCEEEEeecCCCcEEeeecCCC
Confidence            2344544478899999988653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.6e-17  Score=141.47  Aligned_cols=244  Identities=15%  Similarity=0.264  Sum_probs=170.2

Q ss_pred             ecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCe
Q 018675           74 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNE  152 (352)
Q Consensus        74 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~  152 (352)
                      .+.|+++.|+|..++|++++.|++++||...+.....++.+.-...+|.+..|.|+|. .+++++....+..||+...+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            3689999999999999999999999999876654444554444467899999999998 899999999999999975543


Q ss_pred             eEEEEEeecCc-cCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          153 FECVSVLQGHA-QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       153 ~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                       ..+....++. ..+.....+|++++++..+..|.|.+......     ..+.++.     ..+.|..++|+.+++.|++
T Consensus       293 -~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-----eli~s~K-----ieG~v~~~~fsSdsk~l~~  361 (514)
T KOG2055|consen  293 -TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-----ELITSFK-----IEGVVSDFTFSSDSKELLA  361 (514)
T ss_pred             -ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh-----hhhheee-----eccEEeeEEEecCCcEEEE
Confidence             2344444554 34556678899999999999999988743221     1222221     2467889999999999999


Q ss_pred             EeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcce--EEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccc
Q 018675          232 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI--FSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK  308 (352)
Q Consensus       232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~  308 (352)
                      ++.+|.|.+||++....           ...+.  .++.+  .+++.+.++ ++|+|+..|.|.+|+...  .+....++
T Consensus       362 ~~~~GeV~v~nl~~~~~-----------~~rf~--D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s--~~~s~~Pk  426 (514)
T KOG2055|consen  362 SGGTGEVYVWNLRQNSC-----------LHRFV--DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS--CFASTNPK  426 (514)
T ss_pred             EcCCceEEEEecCCcce-----------EEEEe--ecCccceeeeeecCCCceEEeccCcceEEEeccch--hhccCCCC
Confidence            99999999999874321           11111  11222  344555554 899999999999996432  22222222


Q ss_pred             eeeecccccCcceeEEEecCCCcceEEEecC--CCeEEE
Q 018675          309 MLLKKEKAHDMDVNSVQWSPGERRLLASASD--DGMIKI  345 (352)
Q Consensus       309 ~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~--Dg~i~i  345 (352)
                      . +....--...|+.+.|+||.+ +||.+|.  +..+|+
T Consensus       427 P-ik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrL  463 (514)
T KOG2055|consen  427 P-IKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRL  463 (514)
T ss_pred             c-hhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEE
Confidence            2 222333445799999999975 7776664  344555

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.79  E-value=1.8e-15  Score=131.54  Aligned_cols=269  Identities=11%  Similarity=0.114  Sum_probs=166.8

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE-
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT-   91 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-   91 (352)
                      .+..+.+|. .+.+++|+|+.     ..++++++.|+.+++|+..+++...    .+. .+ ..+..+.|+|+++.+++ 
T Consensus        23 ~~~~~~~~~-~~~~l~~~~dg-----~~l~~~~~~~~~v~~~d~~~~~~~~----~~~-~~-~~~~~~~~~~~g~~l~~~   90 (300)
T TIGR03866        23 VTRTFPVGQ-RPRGITLSKDG-----KLLYVCASDSDTIQVIDLATGEVIG----TLP-SG-PDPELFALHPNGKILYIA   90 (300)
T ss_pred             eEEEEECCC-CCCceEECCCC-----CEEEEEECCCCeEEEEECCCCcEEE----ecc-CC-CCccEEEECCCCCEEEEE
Confidence            345566554 46789999973     1345777889999999987654321    111 12 23567889999987754 


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCC-cEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK-SVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      ++.|+.+.+||..+..  .+..+. +...+.+++|+|++..+++++.++ .+.+||......   ..... .......+.
T Consensus        91 ~~~~~~l~~~d~~~~~--~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~---~~~~~-~~~~~~~~~  163 (300)
T TIGR03866        91 NEDDNLVTVIDIETRK--VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI---VDNVL-VDQRPRFAE  163 (300)
T ss_pred             cCCCCeEEEEECCCCe--EEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE---EEEEE-cCCCccEEE
Confidence            4568999999987643  333343 233468899999999999888765 466778754322   22221 122456789


Q ss_pred             EcCCCCEEEEE-eCCCcEEEEecCCCCCCCceeEeeeeccC-CCC--cccEEEEEEcCCCCEEE-EEeCCCcEEEEcCCc
Q 018675          171 WHPTMDVLFSC-SYDNTIKVWWAEDTDSDNWHCVQTISESN-NGH--SSTIWALSFNAKGDKLV-SCSDDLTIKIWGADI  245 (352)
Q Consensus       171 ~~~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-~~h--~~~i~~l~~~~~~~~l~-s~~~dg~i~iwd~~~  245 (352)
                      |+|++..++++ ..++.+.+|+.....     ....+.... ..+  ......+.|+|++++++ +.+.++.+.+||.+.
T Consensus       164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       164 FTADGKELWVSSEIGGTVSVIDVATRK-----VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             ECCCCCEEEEEcCCCCEEEEEEcCcce-----eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            99999987554 468999999876432     122221100 011  11234688999999854 455677899998753


Q ss_pred             cccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEec-CCCCeEEEEEccCCccccCcccceeeecccccCcceeE
Q 018675          246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASG-AADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS  323 (352)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  323 (352)
                      .+.           ...+.  +...+..+.|++++ .++++ ..++.+.+|+.....         .+.... .....+.
T Consensus       239 ~~~-----------~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~---------~~~~~~-~~~~~~~  295 (300)
T TIGR03866       239 YEV-----------LDYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK---------VIKSIK-VGRLPWG  295 (300)
T ss_pred             CcE-----------EEEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc---------EEEEEE-cccccce
Confidence            211           11111  23457788999876 55554 568999999765422         112222 2345577


Q ss_pred             EEecC
Q 018675          324 VQWSP  328 (352)
Q Consensus       324 ~~~sp  328 (352)
                      ++++|
T Consensus       296 ~~~~~  300 (300)
T TIGR03866       296 VVVRP  300 (300)
T ss_pred             eEeCC
Confidence            77765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=7.4e-17  Score=149.92  Aligned_cols=298  Identities=20%  Similarity=0.302  Sum_probs=189.5

Q ss_pred             EEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC--CCCEEEEEeCCCcEEEEE
Q 018675           25 WSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP--SGKLLATASFDATTCIWE  102 (352)
Q Consensus        25 ~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~i~i~~  102 (352)
                      ..+.|+|-      .+.++++..--.+++||.+.++.+..+..  ...-...|+.+.+-.  |..++++|+.||.|+||+
T Consensus      1068 k~~~~hpf------~p~i~~ad~r~~i~vwd~e~~~~l~~F~n--~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1068 KTLKFHPF------EPQIAAADDRERIRVWDWEKGRLLNGFDN--GAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred             ceeeecCC------CceeEEcCCcceEEEEecccCceeccccC--CCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence            34677776      36788877667899999987654322211  112235677777743  456899999999999997


Q ss_pred             ccC---CceeeeEeec-------cccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEc
Q 018675          103 DVG---GDYECVATLE-------GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH  172 (352)
Q Consensus       103 ~~~---~~~~~~~~~~-------~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~  172 (352)
                      .-.   ++.+.+....       +-.+.=.-++|.....+|+++|+-+.|++||.....  .+.....+....++++.-.
T Consensus      1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~--~~~diP~~s~t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ--VVADIPYGSSTLVTALSAD 1217 (1387)
T ss_pred             ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce--eEeecccCCCccceeeccc
Confidence            532   2223332221       112222456787766677777778999999985432  3333333444556666543


Q ss_pred             -CCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCccc--EEEEEEcCCCCE-EEEEeCCCcEEEEcCCcccc
Q 018675          173 -PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST--IWALSFNAKGDK-LVSCSDDLTIKIWGADITRM  248 (352)
Q Consensus       173 -~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~l~~~~~~~~-l~s~~~dg~i~iwd~~~~~~  248 (352)
                       +.++++++|-.||.+++||.+-...+...+..      ..|...  |..+.+.+.|.- |++|+.||.|++||+++...
T Consensus      1218 ~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~------R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY------REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred             ccCCceEEEeecCCceEEeecccCCccccceee------cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence             34688999999999999987765444332222      135554  888999887654 99999999999999986311


Q ss_pred             ccCCCCccceeeEEeeccc-CcceEEEEecCC-ceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEe
Q 018675          249 QSGDGYASWRHLCTISGYH-DRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW  326 (352)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  326 (352)
                      .   ...     ....... +...+++...+. .++|+|+. +.+++|+..+..+.............   .+.+.+++|
T Consensus      1292 e---~~~-----~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~---~gs~scL~F 1359 (1387)
T KOG1517|consen 1292 E---TFL-----TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQR---IGSVSCLAF 1359 (1387)
T ss_pred             c---ccc-----eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCc---CCCcceeee
Confidence            1   000     0001011 123566666654 46777777 99999988765443322222222222   345799999


Q ss_pred             cCCCcceEEEecCCCeEEEEeeccC
Q 018675          327 SPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       327 sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      +|. +-++|.|+.|.+|.||...+.
T Consensus      1360 HP~-~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPH-RLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cch-hHhhhhccCCceEEEeecCCc
Confidence            996 457889999999999998764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=1.5e-18  Score=151.06  Aligned_cols=290  Identities=23%  Similarity=0.289  Sum_probs=188.3

Q ss_pred             ccEEEEeeCCCeEEEE--ecCC----------------CceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEE
Q 018675           39 APVFASCSGDKTVRIW--EQSA----------------SSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCI  100 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w--~~~~----------------~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i  100 (352)
                      .++.++...|...++|  ++..                ..+.|.++... ..|...|++++|.|....|++++.|+++.+
T Consensus       242 k~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl-~s~~d~ir~l~~~~sep~lit~sed~~lk~  320 (577)
T KOG0642|consen  242 KSISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTL-RSHDDCIRALAFHPSEPVLITASEDGTLKL  320 (577)
T ss_pred             CCccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeee-ecchhhhhhhhcCCCCCeEEEeccccchhh
Confidence            3566777777888888  3211                02234444433 347788999999999999999999999999


Q ss_pred             EEcc------CCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC-------eeEEEEEeecCccCee
Q 018675          101 WEDV------GGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN-------EFECVSVLQGHAQDVK  167 (352)
Q Consensus       101 ~~~~------~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~-------~~~~~~~~~~h~~~v~  167 (352)
                      |+..      ....+++.++.+|.++|.|++..++++++++|+-||+|+.|.+....       +......+.||...++
T Consensus       321 WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw  400 (577)
T KOG0642|consen  321 WNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVW  400 (577)
T ss_pred             hhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecccccee
Confidence            9872      23457788999999999999999999999999999999999765221       1123356789999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccc
Q 018675          168 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR  247 (352)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  247 (352)
                      .+.+|+....|++++.||+++.|.........      + .....|+. -.++++-.....++  ..+.+.+.+++....
T Consensus       401 ~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~------f-~~~~e~g~-Plsvd~~ss~~a~~--~~s~~~~~~~~~~~e  470 (577)
T KOG0642|consen  401 LLALSSTKDRLLSCSSDGTVRLWEPTEESPCT------F-GEPKEHGY-PLSVDRTSSRPAHS--LASFRFGYTSIDDME  470 (577)
T ss_pred             eeeecccccceeeecCCceEEeeccCCcCccc------c-CCccccCC-cceEeeccchhHhh--hhhcccccccchhhh
Confidence            99999998899999999999999765543211      1 11112222 23455533321111  122333443332111


Q ss_pred             cccCCCCccceeeEEeecccCcceEEEEecC-CceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEe
Q 018675          248 MQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW  326 (352)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  326 (352)
                      ..+..-.........  ......+..+.+.+ ..+.+++..|..+++++....         .++.....|...++++++
T Consensus       471 v~s~~~~~~s~~~~~--~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~---------~~l~s~~a~~~svtslai  539 (577)
T KOG0642|consen  471 VVSDLLIFESSASPG--PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG---------KILHSMVAHKDSVTSLAI  539 (577)
T ss_pred             hhhheeeccccCCCc--ccccCccceEEecCCCCeeEecccCCceeccccccc---------ccchheeeccceecceee
Confidence            000000000000000  00011122333334 458889999999999865432         233445678889999999


Q ss_pred             cCCCcceEEEecCCCeEEEEeeccC
Q 018675          327 SPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       327 sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      -|++. +|++++.|+.+++|....+
T Consensus       540 ~~ng~-~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  540 DPNGP-YLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             cCCCc-eEEeecCCceeehhhccch
Confidence            99886 6889999999999998543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.79  E-value=2e-17  Score=138.36  Aligned_cols=209  Identities=25%  Similarity=0.390  Sum_probs=149.3

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeee--eeeeecceecceEEEEECCCC-CEEEEEe
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNC--KAVLEEMHTRTVRSCAWSPSG-KLLATAS   93 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~--~~~~~~~h~~~v~~~~~s~~~-~~l~s~~   93 (352)
                      ..||+..|..++|+|..     ...+||||.|.+|.||.+..+......  ....-..|.+.|..++|+|.. +.|++++
T Consensus        77 v~GHt~~vLDi~w~Pfn-----D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFN-----DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             ccCccccccccccCccC-----CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            46999999999999964     368999999999999997654321111  112225699999999999975 6789999


Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCcc-CeeEEEEc
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ-DVKMVQWH  172 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~-~v~~~~~~  172 (352)
                      .|+++.+|+..+++.  ..++. |..-|.+++|+.+|.+|+|++.|++|+|||.+.+..   +..-.+|.. .-..+.|-
T Consensus       152 ~Dn~v~iWnv~tgea--li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~---v~e~~~heG~k~~Raifl  225 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEA--LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV---VSEGVAHEGAKPARAIFL  225 (472)
T ss_pred             CCceEEEEeccCCce--eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE---eeecccccCCCcceeEEe
Confidence            999999999988753  44565 999999999999999999999999999999877653   343455653 22345566


Q ss_pred             CCCCEEEEEe----CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEcCC
Q 018675          173 PTMDVLFSCS----YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGAD  244 (352)
Q Consensus       173 ~~~~~l~s~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~-~dg~i~iwd~~  244 (352)
                      -++. +++.+    .++.+.+|+..+-...  ...+++.     ..+.|.-=-|.++...+..+| .|+.||.|.+.
T Consensus       226 ~~g~-i~tTGfsr~seRq~aLwdp~nl~eP--~~~~elD-----tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  226 ASGK-IFTTGFSRMSERQIALWDPNNLEEP--IALQELD-----TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             ccCc-eeeeccccccccceeccCcccccCc--ceeEEec-----cCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence            6776 44443    5678999965432111  1122221     223444445678777665554 69999999754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.78  E-value=9.5e-18  Score=134.95  Aligned_cols=223  Identities=23%  Similarity=0.404  Sum_probs=158.3

Q ss_pred             ceeeeeeec-CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCcee-eeeeeeeecceecceEEEEECC--C
Q 018675           10 ELREIQTLE-GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRF-WNCKAVLEEMHTRTVRSCAWSP--S   85 (352)
Q Consensus        10 ~~~~~~~~~-gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~-~~~~~~~~~~h~~~v~~~~~s~--~   85 (352)
                      .++.+..|. .|.+.|.|+.|.|+.      ..+|+- .|..|.+|++....+. ..........|+...++.+|+|  +
T Consensus       111 tlE~v~~Ldteavg~i~cvew~Pns------~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd  183 (370)
T KOG1007|consen  111 TLECVASLDTEAVGKINCVEWEPNS------DKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD  183 (370)
T ss_pred             hhhHhhcCCHHHhCceeeEEEcCCC------CeeEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCc
Confidence            344555554 577799999999963      556664 4999999998876542 1111111123566788899999  6


Q ss_pred             CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeEEEEEeecCcc
Q 018675           86 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ  164 (352)
Q Consensus        86 ~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~  164 (352)
                      |..+++ ..|+++..||.++.. +-...-.+|...|+.+.|+|+.+ +|++|++|+.|++||.+..+  .++..+.+|..
T Consensus       184 gnqv~t-t~d~tl~~~D~RT~~-~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~HsH  259 (370)
T KOG1007|consen  184 GNQVAT-TSDSTLQFWDLRTMK-KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGHSH  259 (370)
T ss_pred             cceEEE-eCCCcEEEEEccchh-hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--ccccccCCCce
Confidence            777775 468999999987643 12233357888999999999766 59999999999999987543  45778889999


Q ss_pred             CeeEEEEcCCC-CEEEEEeCCCcEEEEecCCCCCCC----------------ceeEeeee----ccCCCCcccEEEEEEc
Q 018675          165 DVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDN----------------WHCVQTIS----ESNNGHSSTIWALSFN  223 (352)
Q Consensus       165 ~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~----------------~~~~~~~~----~~~~~h~~~i~~l~~~  223 (352)
                      -++++.|+|.. +++++++.|..+.+|......++.                -...+.+.    +....|+..|++++|+
T Consensus       260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS  339 (370)
T KOG1007|consen  260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS  339 (370)
T ss_pred             EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence            99999999964 567899999999999654322111                00001111    1234689999999998


Q ss_pred             CCCC-EEEEEeCCCcEEEEcC
Q 018675          224 AKGD-KLVSCSDDLTIKIWGA  243 (352)
Q Consensus       224 ~~~~-~l~s~~~dg~i~iwd~  243 (352)
                      .... .+|+-+-||++.|=.+
T Consensus       340 sadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  340 SADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             cCCCeeEEEeccCceEEeecC
Confidence            7655 4677889999988754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=6.6e-18  Score=144.74  Aligned_cols=316  Identities=19%  Similarity=0.266  Sum_probs=211.5

Q ss_pred             ceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC--CC
Q 018675           10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS--GK   87 (352)
Q Consensus        10 ~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~   87 (352)
                      ++.....|.+|.+.|+.+.|...      +..++|+|.|..|.+||+......    ..+...|...|.-..|-|.  .+
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~~------Gd~l~SgSDD~~vv~WdW~~~~~~----l~f~SGH~~NvfQaKFiP~s~d~  200 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQR------GDVLASGSDDLQVVVWDWVSGSPK----LSFESGHCNNVFQAKFIPFSGDR  200 (559)
T ss_pred             HhhhhhcccCCCCccceeeeccc------CceeeccCccceEEeehhhccCcc----cccccccccchhhhhccCCCCCc
Confidence            34566788999999999999886      679999999999999999876432    2334557777777778773  46


Q ss_pred             EEEEEeCCCcEEEEEccC-CceeeeEeeccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEEEEeecCcc-
Q 018675           88 LLATASFDATTCIWEDVG-GDYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ-  164 (352)
Q Consensus        88 ~l~s~~~d~~i~i~~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~-  164 (352)
                      -+++++.||.+++=.... +..+-...+..|.++|..++.-|+. .-|.+++.|+.+.=.|++...+.....+-..+.. 
T Consensus       201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~  280 (559)
T KOG1334|consen  201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE  280 (559)
T ss_pred             CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence            789999999998765433 3222245567899999999998854 4699999999999999876554333332233333 


Q ss_pred             --CeeEEEEcCCCC-EEEEEeCCCcEEEEecCCCCCCC------ceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC
Q 018675          165 --DVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDN------WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD  235 (352)
Q Consensus       165 --~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~------~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d  235 (352)
                        ....++..|... .+++++.|-.+++||.+..+...      ..|...+..   ...-.|+++.|+.++..|.+.-.|
T Consensus       281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~---d~~v~ITgl~Ysh~~sElLaSYnD  357 (559)
T KOG1334|consen  281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE---DDPVNITGLVYSHDGSELLASYND  357 (559)
T ss_pred             ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc---cCcccceeEEecCCccceeeeecc
Confidence              345667778655 68999999999999866533221      111112211   223468999999888777777788


Q ss_pred             CcEEEEcCCccccccCCCCccceee-EE-eec-ccCcceEEEEecC--CceEEecCCCCeEEEEEccCCccccCccccee
Q 018675          236 LTIKIWGADITRMQSGDGYASWRHL-CT-ISG-YHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPSYKML  310 (352)
Q Consensus       236 g~i~iwd~~~~~~~~~~~~~~~~~~-~~-~~~-~~~~~i~~~~~~~--~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~  310 (352)
                      -.|.+|.-.+...........-++. .. +.+ .+..+|..+-|-.  ..++++|+.=|.|.+|..+...+         
T Consensus       358 e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei---------  428 (559)
T KOG1334|consen  358 EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI---------  428 (559)
T ss_pred             cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH---------
Confidence            8899995433322111111100011 11 111 1234455554433  46899999999999996554322         


Q ss_pred             eecccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       311 ~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      +....+-..-|+||.=+|--+ +|||.|.|..||||..
T Consensus       429 i~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  429 IRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTP  465 (559)
T ss_pred             HHHhhcccceEeccCCCCCCc-hhhccCCccceeeecC
Confidence            222222223699999889765 8999999999999976

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.78  E-value=6.6e-17  Score=143.66  Aligned_cols=274  Identities=20%  Similarity=0.317  Sum_probs=188.7

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE  102 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  102 (352)
                      .|+.++|.|+.      ..|+-+ .+..+-+||...+....    .+ +.|...|++++|+.||+.+|+|+.|..+.+|.
T Consensus        14 ci~d~afkPDG------sqL~lA-Ag~rlliyD~ndG~llq----tL-KgHKDtVycVAys~dGkrFASG~aDK~VI~W~   81 (1081)
T KOG1538|consen   14 CINDIAFKPDG------TQLILA-AGSRLLVYDTSDGTLLQ----PL-KGHKDTVYCVAYAKDGKRFASGSADKSVIIWT   81 (1081)
T ss_pred             chheeEECCCC------ceEEEe-cCCEEEEEeCCCccccc----cc-ccccceEEEEEEccCCceeccCCCceeEEEec
Confidence            89999999984      445544 35678899988775432    22 46999999999999999999999999999996


Q ss_pred             ccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEe
Q 018675          103 DVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS  182 (352)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  182 (352)
                      ..-   +-+.. ..|+..|.|+.|+|-..+|++|+-.. .-+|......    +... .....+.+.+|..||++++.|-
T Consensus        82 ~kl---EG~Lk-YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~----V~K~-kss~R~~~CsWtnDGqylalG~  151 (1081)
T KOG1538|consen   82 SKL---EGILK-YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS----VSKH-KSSSRIICCSWTNDGQYLALGM  151 (1081)
T ss_pred             ccc---cceee-eccCCeeeEeecCchHHHhhhcchhh-ccccChhhhh----HHhh-hhheeEEEeeecCCCcEEEEec
Confidence            432   11222 36899999999999989999998643 4478643211    1111 1234688899999999999999


Q ss_pred             CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC-----CEEEEEeCCCcEEEEcCCccccccCCCCccc
Q 018675          183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-----DKLVSCSDDLTIKIWGADITRMQSGDGYASW  257 (352)
Q Consensus       183 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  257 (352)
                      .+|+|.|-+-.....   ..   + +...|-.++|++++|+|..     +.++......++.++.+... +...+.    
T Consensus       152 ~nGTIsiRNk~gEek---~~---I-~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r----  219 (1081)
T KOG1538|consen  152 FNGTISIRNKNGEEK---VK---I-ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDR----  219 (1081)
T ss_pred             cCceEEeecCCCCcc---eE---E-eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccc----
Confidence            999999975333211   11   1 2234567899999999963     45777777778887765421 111000    


Q ss_pred             eeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEE
Q 018675          258 RHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLAS  336 (352)
Q Consensus       258 ~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s  336 (352)
                           ..   .-...++.+-++| ++..|+.|+.+.+|...+          ..+.+.......|..++..|+++ .++.
T Consensus       220 -----~L---~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G----------vrLGTvg~~D~WIWtV~~~PNsQ-~v~~  280 (1081)
T KOG1538|consen  220 -----AL---NFDPCCISYFTNGEYILLGGSDKQLSLFTRDG----------VRLGTVGEQDSWIWTVQAKPNSQ-YVVV  280 (1081)
T ss_pred             -----cC---CCCchhheeccCCcEEEEccCCCceEEEeecC----------eEEeeccccceeEEEEEEccCCc-eEEE
Confidence                 00   1112334444444 888999999999985432          12223333567899999999986 5788


Q ss_pred             ecCCCeEEEEeec
Q 018675          337 ASDDGMIKIWELA  349 (352)
Q Consensus       337 ~~~Dg~i~iw~~~  349 (352)
                      |..||+|--|++.
T Consensus       281 GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  281 GCQDGTIACYNLI  293 (1081)
T ss_pred             EEccCeeehhhhH
Confidence            9999999887763

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.78  E-value=3.8e-17  Score=139.06  Aligned_cols=222  Identities=16%  Similarity=0.165  Sum_probs=157.2

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeec-ceecceEEEEECCCCCEEEEE
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE-MHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      +.-+.+|...|++|.|+|..     ..++++.|.||++|+=|++....    ...+.. .-......+.|+.+.+.++.+
T Consensus       227 v~~f~~hs~~Vs~l~F~P~n-----~s~i~ssSyDGtiR~~D~~~~i~----e~v~s~~~d~~~fs~~d~~~e~~~vl~~  297 (498)
T KOG4328|consen  227 VYLFTPHSGPVSGLKFSPAN-----TSQIYSSSYDGTIRLQDFEGNIS----EEVLSLDTDNIWFSSLDFSAESRSVLFG  297 (498)
T ss_pred             eEEeccCCccccceEecCCC-----hhheeeeccCceeeeeeecchhh----HHHhhcCccceeeeeccccCCCccEEEe
Confidence            34567899999999999975     46899999999999998875421    111100 123456778898888888888


Q ss_pred             eCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeE-EEEEeecCccCeeEEE
Q 018675           93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFE-CVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~-~~~~~~~h~~~v~~~~  170 (352)
                      ..=|...+||...+.. ....+.-|...|+.++++|... +|+|||-|+++++||++.-.... +.-....|...|.++.
T Consensus       298 ~~~G~f~~iD~R~~~s-~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAy  376 (498)
T KOG4328|consen  298 DNVGNFNVIDLRTDGS-EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAY  376 (498)
T ss_pred             ecccceEEEEeecCCc-cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeE
Confidence            8878899999876542 2445566888999999999654 69999999999999986543322 2233446888999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeec--cCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccc
Q 018675          171 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE--SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR  247 (352)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  247 (352)
                      |+|++-.|++.+.|..|+||+..--. .......++..  ....|.. .....|.|+..+++.|-.-..|-|+|-+..+
T Consensus       377 FSPs~gtl~TT~~D~~IRv~dss~~s-a~~~p~~~I~Hn~~t~RwlT-~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  377 FSPSGGTLLTTCQDNEIRVFDSSCIS-AKDEPLGTIPHNNRTGRWLT-PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             EcCCCCceEeeccCCceEEeeccccc-ccCCccceeeccCccccccc-chhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence            99998889999999999999763000 00011112211  0111222 2345799999999999988889999866544

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.77  E-value=1.3e-14  Score=131.54  Aligned_cols=293  Identities=34%  Similarity=0.589  Sum_probs=201.0

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeC-CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCC-EE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSG-DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK-LL   89 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~-D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l   89 (352)
                      .....+.+|...|.+++|+|+.      ..+++++. |+.+++|+.......    ..+ ..|...|.+++|+|+++ .+
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~v~~~~~~~~~~~~~  214 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDG------KLLASGSSLDGTIKLWDLRTGKPL----STL-AGHTDPVSSLAFSPDGGLLI  214 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCC------CEEEecCCCCCceEEEEcCCCceE----Eee-ccCCCceEEEEEcCCcceEE
Confidence            3445678999999999999973      57888875 999999998763321    112 23788999999999998 56


Q ss_pred             EEEeCCCcEEEEEccCCceeeeE-eeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeE
Q 018675           90 ATASFDATTCIWEDVGGDYECVA-TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM  168 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~  168 (352)
                      ++++.|+.+.+|+...+  .... .+.+|...+ ...|+|++..+++++.|+.+++|++.....  ....+.+|...+.+
T Consensus       215 ~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~  289 (466)
T COG2319         215 ASGSSDGTIRLWDLSTG--KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLS  289 (466)
T ss_pred             EEecCCCcEEEEECCCC--cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEE
Confidence            66699999999976533  2333 577787775 448999998889999999999999875543  22233678889999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEcCCccc
Q 018675          169 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADITR  247 (352)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~  247 (352)
                      +.|.|++..+++++.|+.+.+|+......     .....  ...|...+..+.|.+++..++.+ ..|+.+.+|+.....
T Consensus       290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         290 VAFSPDGKLLASGSSDGTVRLWDLETGKL-----LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEECCCCCEEEEeeCCCcEEEEEcCCCce-----EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            99999888888899998899996544321     11111  23566678999994332455555 688999999875332


Q ss_pred             cccCCCCccceeeEEeecccCcceEEEEecCCceEEe-cCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEe
Q 018675          248 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIAS-GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW  326 (352)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s-~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  326 (352)
                      .           .....  ....+..+.+.+...+.. +..++.+.+|.......         ......+...+....+
T Consensus       363 ~-----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~  420 (466)
T COG2319         363 P-----------LKTLE--GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL---------LRNLDGHTSRVTSLDF  420 (466)
T ss_pred             e-----------eEEec--CCceEEEEEECCCCCEEEEecCCCceEEEecccCee---------eeeccCCCCcEEEEEE
Confidence            0           00000  111144555555222333 67888999996643221         1111111167889999


Q ss_pred             cCCCcceEEEecCCCeEEEEeecc
Q 018675          327 SPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       327 sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ++++. .+++++.++.+++|+...
T Consensus       421 ~~~~~-~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         421 SPDGK-SLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CCCCc-EEEEecCCCcEEEEeccC
Confidence            99875 577889999999998753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=3.3e-17  Score=137.07  Aligned_cols=209  Identities=22%  Similarity=0.415  Sum_probs=144.1

Q ss_pred             eeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCC----eeEEEEEeecCccCeeEEEEcCC-CCEEEEEeCCCc
Q 018675          113 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGN----EFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNT  186 (352)
Q Consensus       113 ~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~  186 (352)
                      .+.+|.++|..++|+| +.+.|++||+|.+|+||++....    ..+++..+.+|+..|-.++|||. .+.|++++.|+.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4568999999999999 45679999999999999986543    23456778999999999999997 457889999999


Q ss_pred             EEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCC-CCccceeeEEeec
Q 018675          187 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD-GYASWRHLCTISG  265 (352)
Q Consensus       187 i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~  265 (352)
                      |.+|++.....     ..++     .|..-|++++|+.+|.+|++.+.|..|||||.+........ .+..         
T Consensus       156 v~iWnv~tgea-----li~l-----~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG---------  216 (472)
T KOG0303|consen  156 VSIWNVGTGEA-----LITL-----DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG---------  216 (472)
T ss_pred             EEEEeccCCce-----eeec-----CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC---------
Confidence            99998865431     2222     39999999999999999999999999999997654332211 1111         


Q ss_pred             ccCcceEEEEecCCceEEe-c---CCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCC
Q 018675          266 YHDRTIFSVHWSREGIIAS-G---AADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG  341 (352)
Q Consensus       266 ~~~~~i~~~~~~~~~~~~s-~---~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg  341 (352)
                         ......-|-.++.+++ |   .++..+.+|+...  +. .   ....+++..- ..|.===|.||..-+++.|-.|+
T Consensus       217 ---~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n--l~-e---P~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~  286 (472)
T KOG0303|consen  217 ---AKPARAIFLASGKIFTTGFSRMSERQIALWDPNN--LE-E---PIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDS  286 (472)
T ss_pred             ---CCcceeEEeccCceeeeccccccccceeccCccc--cc-C---cceeEEeccC-CceEEeeecCCCCEEEEEecCCc
Confidence               1111222233333332 2   3356677775432  11 1   1112223222 23433336777776777888999


Q ss_pred             eEEEEeecc
Q 018675          342 MIKIWELAN  350 (352)
Q Consensus       342 ~i~iw~~~~  350 (352)
                      .||.|++.+
T Consensus       287 ~IRYyEit~  295 (472)
T KOG0303|consen  287 SIRYFEITN  295 (472)
T ss_pred             ceEEEEecC
Confidence            999999865

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.77  E-value=4.9e-17  Score=139.75  Aligned_cols=267  Identities=15%  Similarity=0.206  Sum_probs=178.5

Q ss_pred             eCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCC-EEEEEeCCCcEEEEEccCC--ceeeeEeeccccCCee
Q 018675           46 SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGG--DYECVATLEGHENEVK  122 (352)
Q Consensus        46 s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~i~~~~~~--~~~~~~~~~~h~~~v~  122 (352)
                      |....++|||...-..  .... .-..-...+.++.|+.... .+++.+.|..+++|.....  +...+....+  ..-.
T Consensus         9 S~gd~~kl~D~s~~~~--~~~~-~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~   83 (673)
T KOG4378|consen    9 STGDKTKLSDFSDLET--KSEY-VHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAF   83 (673)
T ss_pred             ccCCceEEeecccccC--cccc-ccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHH
Confidence            3445789999764321  1111 1000123478888886553 2345567888999964332  2222222232  2344


Q ss_pred             EEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCcee
Q 018675          123 SVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHC  202 (352)
Q Consensus       123 ~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~  202 (352)
                      |++......++++|+..+.|++||++.   ..+.+.+++|...|+++.+.-.+.++++++..|.|.|-.+......    
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~---kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t----  156 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRA---KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT----  156 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHH---HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc----
Confidence            555555557899999999999999963   2355678899999999999999999999999999999865443211    


Q ss_pred             EeeeeccCCCCcccEEEEEEcCCCCE-EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-
Q 018675          203 VQTISESNNGHSSTIWALSFNAKGDK-LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-  280 (352)
Q Consensus       203 ~~~~~~~~~~h~~~i~~l~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  280 (352)
                       .++.   .+.+..|.-|.|+|..++ |.+++.+|.|.+||+...           ++...+...|..+...++|+|.. 
T Consensus       157 -t~f~---~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-----------sp~~~~~~~HsAP~~gicfspsne  221 (673)
T KOG4378|consen  157 -TTFT---IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-----------SPIFHASEAHSAPCRGICFSPSNE  221 (673)
T ss_pred             -ccee---cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC-----------CcccchhhhccCCcCcceecCCcc
Confidence             1111   123456778999998665 557899999999997532           22222333466666677888754 


Q ss_pred             -eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          281 -IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       281 -~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                       .+++.+.|+.|.+|+...+..     ...+     .-+.+...++|+++|. +|+.|...|.|.-||++-
T Consensus       222 ~l~vsVG~Dkki~~yD~~s~~s-----~~~l-----~y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  222 ALLVSVGYDKKINIYDIRSQAS-----TDRL-----TYSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             ceEEEecccceEEEeecccccc-----ccee-----eecCCcceeeecCCce-EEEeecCCceEEEEeccc
Confidence             899999999999997653221     1111     2344789999999985 688999999999999863

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.77  E-value=9e-17  Score=129.47  Aligned_cols=216  Identities=17%  Similarity=0.300  Sum_probs=152.3

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeee----eecceecceEEEEECC-CCCEEEEEe
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAV----LEEMHTRTVRSCAWSP-SGKLLATAS   93 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~----~~~~h~~~v~~~~~s~-~~~~l~s~~   93 (352)
                      .|.-.++.+.|.|+..- -..++|||+|  ..+|+|.+........+...    ....+..++++..|+. +.++|.+.+
T Consensus        94 d~~YP~tK~~wiPd~~g-~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKG-VYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCccceEecCCccc-cCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            58889999999997521 1236777753  58999988743211111111    1234567899999986 678899999


Q ss_pred             CCCcEEEEEccCC-ceeeeEeeccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           94 FDATTCIWEDVGG-DYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        94 ~d~~i~i~~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      -|-+..|||.+.+ .......+-+|..+|..++|...+ +.|+++|.||+++++|++.-.-..++..-.....+...++|
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            9999999999875 212334566899999999998854 47999999999999999754322222221221345677888


Q ss_pred             cCCC-CEEEEEeCC-CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEcCCc
Q 018675          172 HPTM-DVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       172 ~~~~-~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~~~dg~i~iwd~~~  245 (352)
                      .+++ +++++-..| ..|.|.|++....        ....+.+|+..|+.++|.|. ...|.|+|+|..+.+||+..
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~t--------pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCT--------PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCc--------ceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            8754 456665554 4688888765421        11233479999999999996 56789999999999999864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.76  E-value=1.3e-14  Score=128.17  Aligned_cols=288  Identities=10%  Similarity=0.171  Sum_probs=170.7

Q ss_pred             EEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe-CCCcEEEEEcc-CCceeeeEeecccc
Q 018675           41 VFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS-FDATTCIWEDV-GGDYECVATLEGHE  118 (352)
Q Consensus        41 ~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~i~i~~~~-~~~~~~~~~~~~h~  118 (352)
                      .+++.+.|+.|++|++.+...+ .....+.  +......++++|++++|.+++ .++.|.+|+.. .+......... ..
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l-~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~   79 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGAL-TLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LP   79 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCce-eeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CC
Confidence            3455578999999999643221 2222221  234567789999999887664 47888889875 23333333222 23


Q ss_pred             CCeeEEEECCCCcEEEEeeC-CCcEEEEecCCCCe-eEEEEEeecCccCeeEEEEcCCCCEEEEEe-CCCcEEEEecCCC
Q 018675          119 NEVKSVSWNASGTLLATCGR-DKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDT  195 (352)
Q Consensus       119 ~~v~~v~~~~~~~~l~s~~~-d~~v~vwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~  195 (352)
                      +....+.|+|++++|++++. ++.|.+|++..... ...+..+. +......+.++|+++++++++ .++.|.+|++...
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            45678999999998887764 78999999853221 12222222 223456788999998876554 5689999987542


Q ss_pred             CCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEcCCccccccCCCCccceeeEEeecc-----cCc
Q 018675          196 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-DLTIKIWGADITRMQSGDGYASWRHLCTISGY-----HDR  269 (352)
Q Consensus       196 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  269 (352)
                      ..-......... ..  .......+.|+|+++++.+... ++.|.+|+++...       ...+....+...     ...
T Consensus       159 g~l~~~~~~~~~-~~--~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~-------~~~~~~~~~~~~p~~~~~~~  228 (330)
T PRK11028        159 GHLVAQEPAEVT-TV--EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH-------GEIECVQTLDMMPADFSDTR  228 (330)
T ss_pred             CcccccCCCcee-cC--CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC-------CCEEEEEEEecCCCcCCCCc
Confidence            110000000000 01  1234567899999999877765 8999999875210       000111111100     111


Q ss_pred             ceEEEEecCCc-eEEec-CCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEe
Q 018675          270 TIFSVHWSREG-IIASG-AADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       270 ~i~~~~~~~~~-~~~s~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      ....+.++|++ +++++ ..++.+.+|.......    . ..++..... ......++|+|+++.++++...+++|.||+
T Consensus       229 ~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~----~-~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        229 WAADIHITPDGRHLYACDRTASLISVFSVSEDGS----V-LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC----e-EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            22346677876 44444 4567899986643211    0 011111111 124557899999998887777799999998


Q ss_pred             ec
Q 018675          348 LA  349 (352)
Q Consensus       348 ~~  349 (352)
                      +.
T Consensus       303 ~~  304 (330)
T PRK11028        303 ID  304 (330)
T ss_pred             Ec
Confidence            74

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=3.7e-16  Score=137.23  Aligned_cols=245  Identities=26%  Similarity=0.380  Sum_probs=165.4

Q ss_pred             eeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcE--EEEeeCCCcEEE
Q 018675           67 AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL--LATCGRDKSVWI  144 (352)
Q Consensus        67 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~--l~s~~~d~~v~v  144 (352)
                      ..+...|++.|++++..|.|..|++|+.||+++||...++  .|+.++. ..+.|+||+|+|.+..  |+.+-. ..+.+
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~i  468 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLI  468 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEE
Confidence            3445679999999999999999999999999999999887  4555543 4678999999997653  443333 33444


Q ss_pred             EecCCC-------------------C--------------ee-EEEEEeecCccCeeEEEEcCCCCEEEEEeCC---CcE
Q 018675          145 WEVMPG-------------------N--------------EF-ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD---NTI  187 (352)
Q Consensus       145 wd~~~~-------------------~--------------~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i  187 (352)
                      -+-.-+                   .              +. .-+...-.|...|+.+.||..|.+|++...+   ..|
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence            321100                   0              00 0012233577789999999999999876554   457


Q ss_pred             EEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeeccc
Q 018675          188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH  267 (352)
Q Consensus       188 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  267 (352)
                      .|..+....      .+.....   -.+.|.++.|+|...+|+.++. ..|+|||+-...+... ...           .
T Consensus       549 liHQLSK~~------sQ~PF~k---skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKk-L~t-----------g  606 (733)
T KOG0650|consen  549 LIHQLSKRK------SQSPFRK---SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKK-LLT-----------G  606 (733)
T ss_pred             EEEeccccc------ccCchhh---cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHH-Hhc-----------C
Confidence            777543321      1111111   2356889999999999888875 6799999753222100 000           1


Q ss_pred             CcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEE
Q 018675          268 DRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW  346 (352)
Q Consensus       268 ~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw  346 (352)
                      ...+.+++.+++| -++.++.|+.+.+++....        ....++..-|...+++++|++.- .+|+||+.||++.|+
T Consensus       607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldls--------skPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS--------SKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVF  677 (733)
T ss_pred             CeeeeeeeecCCCCeEEEecCCCeeEEEEcccC--------cchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEE
Confidence            2235567777765 6888999999988865321        11233456789999999999865 589999999999987

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.75  E-value=6.9e-16  Score=145.60  Aligned_cols=328  Identities=16%  Similarity=0.170  Sum_probs=199.2

Q ss_pred             cCC-ccceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCc---eeeeeeeeeecceecceEEE
Q 018675            5 DDG-NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS---RFWNCKAVLEEMHTRTVRSC   80 (352)
Q Consensus         5 ~~~-~~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~---~~~~~~~~~~~~h~~~v~~~   80 (352)
                      +.| ..+...+..|..|+..|..++.++..     +++|+|||.||+|++|+...-.   ...+....+ ..-..++.++
T Consensus      1031 ~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~-----~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~v 1104 (1431)
T KOG1240|consen 1031 PPGWNPRGILVAHLHEHSSAVIKLAVSSEH-----TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKV 1104 (1431)
T ss_pred             CCCCCccceEeehhhhccccccceeecCCC-----CceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEE
Confidence            344 55667788899999999999988764     4799999999999999865321   111222211 1134678899


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEccCCce---eeeEe--eccc-cCC-eeEEEECC-CCc-EEEEeeCCCcEEEEecCCCC
Q 018675           81 AWSPSGKLLATASFDATTCIWEDVGGDY---ECVAT--LEGH-ENE-VKSVSWNA-SGT-LLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        81 ~~s~~~~~l~s~~~d~~i~i~~~~~~~~---~~~~~--~~~h-~~~-v~~v~~~~-~~~-~l~s~~~d~~v~vwd~~~~~  151 (352)
                      ..-+.++.+|.++.||.|.+.+....+.   .+.+.  ...+ .+. |..-+|.. .+. .++.+..-+.+..||++...
T Consensus      1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred             EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence            9999999999999999999987643111   11111  1111 222 33333332 233 67777777889999986432


Q ss_pred             eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC---CE
Q 018675          152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG---DK  228 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~---~~  228 (352)
                      ....+ ...-..+.|++++.+|.+..++.|...|.+.+||++....     +..   -..++..+|..+..+|-.   ..
T Consensus      1185 ~~w~l-k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~-----i~s---w~~P~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1185 DAWRL-KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP-----ILS---WEHPARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred             hHHhh-hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce-----eec---ccCcccCCcceEEeeccCCCCce
Confidence            21111 1112235689999999999999999999999999876421     111   112345778888877743   34


Q ss_pred             EEEE-e-CCCcEEEEcCCcccccc----CCCCccceeeEEe----ecccCcceEEEEecCCceEEecCCCCeEEEEEccC
Q 018675          229 LVSC-S-DDLTIKIWGADITRMQS----GDGYASWRHLCTI----SGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK  298 (352)
Q Consensus       229 l~s~-~-~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~  298 (352)
                      .+++ + ..+.|.+|++.....+.    ..+..........    .......+.+.-...++.+.+|+.|..|+.|+...
T Consensus      1256 ~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             EEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence            4444 3 57889999875432110    0000000000000    00111223344445577899999999999997542


Q ss_pred             Cccc-----------------------------c---------Ccc--c-cee-e-----ecccccCcceeEEEecCCCc
Q 018675          299 DDLI-----------------------------D---------GPS--Y-KML-L-----KKEKAHDMDVNSVQWSPGER  331 (352)
Q Consensus       299 ~~~~-----------------------------~---------~~~--~-~~~-~-----~~~~~h~~~i~~~~~sp~~~  331 (352)
                      -...                             +         ...  . ... .     .....|-..|+++++....+
T Consensus      1336 p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q 1415 (1431)
T KOG1240|consen 1336 PEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQ 1415 (1431)
T ss_pred             cccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCc
Confidence            1000                             0         000  0 000 0     01135778999999877667


Q ss_pred             ceEEEecCCCeEEEEe
Q 018675          332 RLLASASDDGMIKIWE  347 (352)
Q Consensus       332 ~~l~s~~~Dg~i~iw~  347 (352)
                      .+|++++.||.|+||.
T Consensus      1416 ~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1416 PLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             cEEEEecCCCeeeecC
Confidence            7899999999999995

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=5.2e-18  Score=158.93  Aligned_cols=212  Identities=17%  Similarity=0.369  Sum_probs=161.0

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC-CCEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS-GKLLA   90 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~   90 (352)
                      ..+.++..|++.|.+++|+|..     +.+||+|++||.|.|||+.....-....   ...-...|.+++|+-. ..+|+
T Consensus       107 ~~la~~~~h~G~V~gLDfN~~q-----~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~lsWNrkvqhILA  178 (1049)
T KOG0307|consen  107 EVLATKSKHTGPVLGLDFNPFQ-----GNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKCLSWNRKVSHILA  178 (1049)
T ss_pred             HHHhhhcccCCceeeeeccccC-----CceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceEeccchhhhHHhh
Confidence            4455677899999999999986     4699999999999999987644322221   1123467999999864 56789


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeecccc--CCeeEEEECCCCc-EEEEeeCCC---cEEEEecCCCCeeEEEEEeecCcc
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHE--NEVKSVSWNASGT-LLATCGRDK---SVWIWEVMPGNEFECVSVLQGHAQ  164 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~--~~v~~v~~~~~~~-~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~h~~  164 (352)
                      +++.+|.+.|||.+..  +++..+..+.  ..+..+.|+|+.. .++++++|.   .|.+||++...  .++.++.+|..
T Consensus       179 S~s~sg~~~iWDlr~~--~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k~~~~H~~  254 (1049)
T KOG0307|consen  179 SGSPSGRAVIWDLRKK--KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLKILEGHQR  254 (1049)
T ss_pred             ccCCCCCceeccccCC--CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchhhhccccc
Confidence            9999999999998765  3344444443  3477899999764 577776654   78899987543  34566789999


Q ss_pred             CeeEEEEcCCC-CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEc
Q 018675          165 DVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCSDDLTIKIWG  242 (352)
Q Consensus       165 ~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s~~~dg~i~iwd  242 (352)
                      .|.++.|.+.+ .+|++++.|+.|.+|+.+..     ..+..+    ...+++++.+.|+|... .++..+-||.|-|+.
T Consensus       255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-----Evl~~~----p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-----EVLGEL----PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS  325 (1049)
T ss_pred             ceeeeccCCCCchhhhcccCCCCeeEecCCCc-----eEeeec----CCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence            99999999976 78999999999999976543     222223    24568999999999876 677888999999998


Q ss_pred             CC
Q 018675          243 AD  244 (352)
Q Consensus       243 ~~  244 (352)
                      +.
T Consensus       326 l~  327 (1049)
T KOG0307|consen  326 LQ  327 (1049)
T ss_pred             ee
Confidence            65

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=4.2e-17  Score=141.85  Aligned_cols=223  Identities=16%  Similarity=0.230  Sum_probs=156.9

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC--CCCEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP--SGKLL   89 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l   89 (352)
                      ....+|+||++.|+|+.|+.+      |.+|+|||.|-.+.|||....+    ....+...|...|.++.|-|  +.+++
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~d------G~lL~SGSDD~r~ivWd~~~~K----llhsI~TgHtaNIFsvKFvP~tnnriv  110 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNAD------GELLASGSDDTRLIVWDPFEYK----LLHSISTGHTANIFSVKFVPYTNNRIV  110 (758)
T ss_pred             chhhhhccccceecceeecCC------CCEEeecCCcceEEeecchhcc----eeeeeecccccceeEEeeeccCCCeEE
Confidence            445678999999999999987      6899999999999999986443    33445567999999999988  56789


Q ss_pred             EEEeCCCcEEEEEccCC--------ceeeeEeeccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEE----
Q 018675           90 ATASFDATTCIWEDVGG--------DYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECV----  156 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~--------~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~----  156 (352)
                      ++|+.|..|+++|....        ..+...-..+|...|..++-.|++ +.|-++++||+++-+|++......+-    
T Consensus       111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~  190 (758)
T KOG1310|consen  111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP  190 (758)
T ss_pred             EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence            99999999999997531        223344567899999999999987 67999999999999999753211100    


Q ss_pred             ---EEeecCccCeeEEEEcCCCC-EEEEEeCCCcEEEEecCCCC---CCCce----------eEeeeec----cCCC-Cc
Q 018675          157 ---SVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTD---SDNWH----------CVQTISE----SNNG-HS  214 (352)
Q Consensus       157 ---~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~---~~~~~----------~~~~~~~----~~~~-h~  214 (352)
                         ..+...--...+++.+|... +|++|+.|...++||.+...   ...+.          |..-+..    ...+ ..
T Consensus       191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence               00111112466889999754 78899999999999843210   01110          1110000    0001 01


Q ss_pred             ---ccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          215 ---STIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       215 ---~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                         ..++-+.|+|+|..|+..-....|.+||++
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn  303 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN  303 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence               125567899999887776666789999875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1e-16  Score=131.88  Aligned_cols=270  Identities=15%  Similarity=0.240  Sum_probs=173.6

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeeccee-cceEEEEECCCCCEEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT-RTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s   91 (352)
                      .+..+++|...++.+.|...+.    +..+.+|+.||+||+||+....+.....   ...|. .+-.+++..-.++++++
T Consensus        62 ~l~~fk~~~~~~N~vrf~~~ds----~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~---~~~~~~~~f~~ld~nck~~ii~~  134 (376)
T KOG1188|consen   62 LLEEFKGPPATTNGVRFISCDS----PHGVISCSSDGTVRLWDIRSQAESARIS---WTQQSGTPFICLDLNCKKNIIAC  134 (376)
T ss_pred             hhheecCCCCcccceEEecCCC----CCeeEEeccCCeEEEEEeecchhhhhee---ccCCCCCcceEeeccCcCCeEEe
Confidence            4567889999999999977542    4679999999999999987654322211   12233 45667776667788888


Q ss_pred             Ee----CCCcEEEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCe
Q 018675           92 AS----FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV  166 (352)
Q Consensus        92 ~~----~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v  166 (352)
                      |.    .|-.+.+||.+..+.....-...|...|++++|+| +.++|++||-||.|.++|+...+.-..+.....|...|
T Consensus       135 GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI  214 (376)
T KOG1188|consen  135 GTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSI  214 (376)
T ss_pred             ccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhccccee
Confidence            75    35578999987654323344578999999999999 56799999999999999986543222222222355678


Q ss_pred             eEEEEcCCC-CEEEEEeCCCcEEEEecCCCCCCCceeEeeeec----cCCCCcccEEEEEEcCCCCEEEEEeC-CCcEEE
Q 018675          167 KMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE----SNNGHSSTIWALSFNAKGDKLVSCSD-DLTIKI  240 (352)
Q Consensus       167 ~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~----~~~~h~~~i~~l~~~~~~~~l~s~~~-dg~i~i  240 (352)
                      .++.|+..+ +.+.+-+.+....+|++++.+...+.....+..    .......-|.... ..+...++.++. -|...+
T Consensus       215 ~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~~~~  293 (376)
T KOG1188|consen  215 HLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHS-PGDKDTCALAGTDSNKGTI  293 (376)
T ss_pred             eeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeeccc-CCCcceEEEeccccCceeE
Confidence            899998765 457888899999999987765332211110100    0011112222211 123445554444 677777


Q ss_pred             EcCCccccccCCCCccceeeEEeecccCcceEEEEecC-CceEEecCCCCeEEEEE
Q 018675          241 WGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFV  295 (352)
Q Consensus       241 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~s~~~d~~v~~~~  295 (352)
                      +-+....  +.   ........+.+.|...+.++.|.. +.++.+|+.||.+.+|.
T Consensus       294 ~~~~~~~--s~---~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  294 FPLVDTS--SG---SLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             EEeeecc--cc---cccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence            7443111  10   111234455556677777776665 45899999999999996

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.73  E-value=6.5e-16  Score=126.34  Aligned_cols=212  Identities=19%  Similarity=0.327  Sum_probs=146.1

Q ss_pred             cceEEEEEccCC-CCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceec---ceEEEEECCCCCEEEEEeCCCc
Q 018675           22 DRVWSLAWKPTA-GVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR---TVRSCAWSPSGKLLATASFDAT   97 (352)
Q Consensus        22 ~~V~~i~~~p~~-~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~d~~   97 (352)
                      +.|+.-+|-|.. ..+|...++|+.+.|.-|.+||.-+++.  ++.... ..|..   ...+++|+|||..|.. +..+.
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~l--raSy~~-ydh~de~taAhsL~Fs~DGeqlfa-Gykrc  180 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKL--RASYRA-YDHQDEYTAAHSLQFSPDGEQLFA-GYKRC  180 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeecccccc--ccchhh-hhhHHhhhhheeEEecCCCCeEee-cccce
Confidence            577888886533 2355568899999999999999877642  111111 12322   3468999999999875 57789


Q ss_pred             EEEEEc-cCCceeeeEeec-----cccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           98 TCIWED-VGGDYECVATLE-----GHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        98 i~i~~~-~~~~~~~~~~~~-----~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      |+++|. +.+.........     +..+-+.|++|+|.. ..++.++...++-++.-...   .++..+.+|...|+.++
T Consensus       181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~---~pl~llggh~gGvThL~  257 (406)
T KOG2919|consen  181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---RPLQLLGGHGGGVTHLQ  257 (406)
T ss_pred             EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC---CceeeecccCCCeeeEE
Confidence            999997 334332222222     235678899999954 47888888888877764333   34566779999999999


Q ss_pred             EcCCCCEEEEEeC-CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          171 WHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       171 ~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      |.++++.|++|+. |..|..||++....-    +..+..........| -.+..|+++.|++|+.||.|++||++.
T Consensus       258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~p----v~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  258 WCEDGNKLFSGARKDDKILCWDIRYSRDP----VYALERHVGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             eccCcCeecccccCCCeEEEEeehhccch----hhhhhhhccCccceE-EEecCCCCceeeccCCCccEEEEecCC
Confidence            9999999999886 778999998764321    111211110011223 245578999999999999999999763

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.73  E-value=3.1e-15  Score=136.28  Aligned_cols=277  Identities=19%  Similarity=0.288  Sum_probs=178.7

Q ss_pred             CeEEEEecCCCceeeeeeeeeecceecceEEEEECC-CCCEEEEEeCCCcEEEEEccCCceee----eEeeccccCCeeE
Q 018675           49 KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYEC----VATLEGHENEVKS  123 (352)
Q Consensus        49 ~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~i~~~~~~~~~~----~~~~~~h~~~v~~  123 (352)
                      +.+.+|++..+.   .+...+  .-...|+++.|+| +..+++.|..+|.|.+||...+...+    -.....|..++..
T Consensus       222 ~~~~vW~~~~p~---~Pe~~~--~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~  296 (555)
T KOG1587|consen  222 GVLLVWSLKNPN---TPELVL--ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA  296 (555)
T ss_pred             ceEEEEecCCCC---CceEEE--ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence            478899987652   122222  2357899999999 55778888899999999976543321    1223578899999


Q ss_pred             EEECCC--CcEEEEeeCCCcEEEEecCCCCe-eE--EEEEee------cCccCeeEEEEcCCC-CEEEEEeCCCcEEEEe
Q 018675          124 VSWNAS--GTLLATCGRDKSVWIWEVMPGNE-FE--CVSVLQ------GHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWW  191 (352)
Q Consensus       124 v~~~~~--~~~l~s~~~d~~v~vwd~~~~~~-~~--~~~~~~------~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~  191 (352)
                      +.|-.+  +.-|++++.||+|..|+++.-.. .+  +.....      .-...++++.|.|.. ..++.|+++|.|.--+
T Consensus       297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~  376 (555)
T KOG1587|consen  297 VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGC  376 (555)
T ss_pred             EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEe
Confidence            999543  34599999999999998742211 00  000001      122357889998864 4688999999886632


Q ss_pred             cCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcce
Q 018675          192 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI  271 (352)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  271 (352)
                      -.+..... ............|..+|.++.++|=+..++..+.|-+++||+.....          .++..+ ..+...+
T Consensus       377 r~g~~~~~-~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~----------~Pl~~~-~~~~~~v  444 (555)
T KOG1587|consen  377 RKGYTPAP-EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA----------SPLLSL-DSSPDYV  444 (555)
T ss_pred             ccCCcccc-cccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC----------Ccchhh-hhcccee
Confidence            11111100 01111122334688999999999977655544449999999754110          011111 1123348


Q ss_pred             EEEEecCCc--eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          272 FSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       272 ~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      +.++|+|-.  .++++..+|.+.+|+......     ..  +.+...+....+.+.|++.++ +|+.|.+.|.+++|++.
T Consensus       445 ~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-----~P--v~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  445 TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-----EP--VLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLS  516 (555)
T ss_pred             eeeEEcCcCceEEEEEcCCCceehhhhhcccc-----CC--cccccccccccceeecCCCCc-EEEEecCCCcEEEEEcC
Confidence            889999964  899999999999996543221     11  122223366778888888775 78999999999999985


Q ss_pred             c
Q 018675          350 N  350 (352)
Q Consensus       350 ~  350 (352)
                      .
T Consensus       517 ~  517 (555)
T KOG1587|consen  517 E  517 (555)
T ss_pred             c
Confidence            3

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.73  E-value=3.8e-16  Score=128.70  Aligned_cols=224  Identities=20%  Similarity=0.385  Sum_probs=164.4

Q ss_pred             cceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCE
Q 018675            9 YELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKL   88 (352)
Q Consensus         9 ~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~   88 (352)
                      ++...+..++||.+.|+....-|..      +-+++.+.|.++|+|-.....+.|...   ......++++.++.++.+.
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e------~gv~~~s~drtvrv~lkrds~q~wpsI---~~~mP~~~~~~~y~~e~~~   82 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKE------EGVISVSEDRTVRVWLKRDSGQYWPSI---YHYMPSPCSAMEYVSESRR   82 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCC------CCeEEccccceeeeEEeccccccCchh---hhhCCCCceEeeeeccceE
Confidence            4556778899999999988877753      468999999999999655544444322   2234678899999999999


Q ss_pred             EEEEeCCCcEEEEEcc--CCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC---------------
Q 018675           89 LATASFDATTCIWEDV--GGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN---------------  151 (352)
Q Consensus        89 l~s~~~d~~i~i~~~~--~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~---------------  151 (352)
                      |..|-..|++.-+...  -.+.........|...|..+.|+...+++++.+.|..+.-.-...+.               
T Consensus        83 L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~  162 (404)
T KOG1409|consen   83 LYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ  162 (404)
T ss_pred             EEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence            9999988888766431  11222233445788899999998888888888888765422111110               


Q ss_pred             -----------------------eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeec
Q 018675          152 -----------------------EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE  208 (352)
Q Consensus       152 -----------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~  208 (352)
                                             ....+..+.+|...+.++.|.|....|++|..|..+.+||+......        .-
T Consensus       163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~--------~~  234 (404)
T KOG1409|consen  163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT--------AY  234 (404)
T ss_pred             eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce--------ee
Confidence                                   11234557789999999999999999999999999999998764321        11


Q ss_pred             cCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccc
Q 018675          209 SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ  249 (352)
Q Consensus       209 ~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  249 (352)
                      ...+|...|..+..-+.-..+++++.||.|.+|+.+..+..
T Consensus       235 el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  235 ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE  275 (404)
T ss_pred             eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence            23478888888888777788999999999999998754433

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=2.4e-18  Score=156.00  Aligned_cols=122  Identities=24%  Similarity=0.482  Sum_probs=105.0

Q ss_pred             ceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE
Q 018675           10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL   89 (352)
Q Consensus        10 ~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l   89 (352)
                      +++.+..|.||...|+|+.|..+      +-+++||++|..++||..++......+     ..|.+.|+.++.+.+..++
T Consensus       179 kmk~ikrLlgH~naVyca~fDrt------g~~Iitgsdd~lvKiwS~et~~~lAs~-----rGhs~ditdlavs~~n~~i  247 (1113)
T KOG0644|consen  179 KMKNIKRLLGHRNAVYCAIFDRT------GRYIITGSDDRLVKIWSMETARCLASC-----RGHSGDITDLAVSSNNTMI  247 (1113)
T ss_pred             HHHHHHHHHhhhhheeeeeeccc------cceEeecCccceeeeeeccchhhhccC-----CCCccccchhccchhhhhh
Confidence            34566778899999999999765      679999999999999998776544333     4588999999999999999


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecC
Q 018675           90 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM  148 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~  148 (352)
                      ++++.|..|++|....+  .++..+.+|+++|++++|+|-.    +.+.||++++||.+
T Consensus       248 aaaS~D~vIrvWrl~~~--~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  248 AAASNDKVIRVWRLPDG--APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             hhcccCceEEEEecCCC--chHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            99999999999988776  4678889999999999999953    78999999999975

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.72  E-value=3.8e-16  Score=135.59  Aligned_cols=266  Identities=18%  Similarity=0.302  Sum_probs=165.8

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCce---eeeeeeee-ecceecceEEEEECCCCCEEEEEeC
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSR---FWNCKAVL-EEMHTRTVRSCAWSPSGKLLATASF   94 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~---~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~   94 (352)
                      -|+..|-|+.|..+.       -++..++|..+.+|.--+...   ...+...+ ...|..+- +..=-.....++.++.
T Consensus        12 r~~e~vc~v~w~~~e-------ei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~r-s~~~g~~~d~~~i~s~   83 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNE-------EIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGR-SSGGGKGSDTLLICSN   83 (737)
T ss_pred             ccceeEEeecccccc-------eEEEeccCceEEEeecccchhhhhhhCCcccCCcccccccc-ccCCCCCcceEEEEcC
Confidence            477888899998753       355556777777774322211   11111111 11221110 0000012346888899


Q ss_pred             CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC
Q 018675           95 DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT  174 (352)
Q Consensus        95 d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (352)
                      ||.+.+.... +  ..-..+..|.+++.+-.|+|+|.-|+++++||.|++|.-. +   ....++.....+|.|++|.|+
T Consensus        84 DGkf~il~k~-~--rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-G---MLRStl~Q~~~~v~c~~W~p~  156 (737)
T KOG1524|consen   84 DGRFVILNKS-A--RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-G---MLRSTVVQNEESIRCARWAPN  156 (737)
T ss_pred             CceEEEeccc-c--hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-c---hHHHHHhhcCceeEEEEECCC
Confidence            9999887532 2  2223467899999999999999999999999999999842 2   112233334568999999998


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCC
Q 018675          175 MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY  254 (352)
Q Consensus       175 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  254 (352)
                      .+.++-+.. +.+.|=-+. ...   + +  +  .-.+|.+-|.+++|++..+.+++||+|-+.++||.....+.     
T Consensus       157 S~~vl~c~g-~h~~IKpL~-~n~---k-~--i--~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf-----  221 (737)
T KOG1524|consen  157 SNSIVFCQG-GHISIKPLA-ANS---K-I--I--RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLF-----  221 (737)
T ss_pred             CCceEEecC-CeEEEeecc-ccc---c-e--e--EEeccCcEEEEeecCccccceeecCCceeEEeecccCcccc-----
Confidence            765443322 223221110 000   0 1  1  12379999999999999999999999999999986422211     


Q ss_pred             ccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceE
Q 018675          255 ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLL  334 (352)
Q Consensus       255 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l  334 (352)
                              -+..|+-+|++++|.|+..++.++.+ +.+                    ......+.|..++|||||.+ +
T Consensus       222 --------~S~~~ey~ITSva~npd~~~~v~S~n-t~R--------------------~~~p~~GSifnlsWS~DGTQ-~  271 (737)
T KOG1524|consen  222 --------TSAAEEYAITSVAFNPEKDYLLWSYN-TAR--------------------FSSPRVGSIFNLSWSADGTQ-A  271 (737)
T ss_pred             --------cCChhccceeeeeeccccceeeeeee-eee--------------------ecCCCccceEEEEEcCCCce-e
Confidence                    11246778999999998655554422 222                    12345578999999999987 4


Q ss_pred             EEecCCCeEE
Q 018675          335 ASASDDGMIK  344 (352)
Q Consensus       335 ~s~~~Dg~i~  344 (352)
                      +.|...|.+.
T Consensus       272 a~gt~~G~v~  281 (737)
T KOG1524|consen  272 TCGTSTGQLI  281 (737)
T ss_pred             eccccCceEE
Confidence            5555555543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.72  E-value=3.4e-15  Score=125.58  Aligned_cols=265  Identities=17%  Similarity=0.301  Sum_probs=174.6

Q ss_pred             ceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecC--------CC----ceeeeeeeeeecceecce
Q 018675           10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQS--------AS----SRFWNCKAVLEEMHTRTV   77 (352)
Q Consensus        10 ~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~--------~~----~~~~~~~~~~~~~h~~~v   77 (352)
                      ..+-+..|..|...|+++.|+|+      +.+||||+++|.+.+|...        +.    ++.|..+... ..|...|
T Consensus        54 ~V~y~s~Ls~H~~aVN~vRf~p~------gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~l-r~h~~di  126 (434)
T KOG1009|consen   54 KVEYLSSLSRHTRAVNVVRFSPD------GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVL-RGHRDDI  126 (434)
T ss_pred             eEEEeecccCCcceeEEEEEcCC------cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEe-cccccch
Confidence            44566788999999999999997      6899999999999999765        20    1224333333 3488999


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEE
Q 018675           78 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS  157 (352)
Q Consensus        78 ~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  157 (352)
                      +.++|+|++.++++++.|+++.+||...+.  ....+..|..-|..++|.|-++++++-+.|+..+.+.+...+...++.
T Consensus       127 ydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~--l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~  204 (434)
T KOG1009|consen  127 YDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ--LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHG  204 (434)
T ss_pred             hhhhccCCCceeeeeeccceEEEEEeccce--eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeee
Confidence            999999999999999999999999988774  466778899999999999999999999999877777654322211111


Q ss_pred             --Eee---c-----------Cc----cCeeEEEEcCCCCEEEEEe----CCCcEEEE--ecCCCCCCCceeEeeeeccCC
Q 018675          158 --VLQ---G-----------HA----QDVKMVQWHPTMDVLFSCS----YDNTIKVW--WAEDTDSDNWHCVQTISESNN  211 (352)
Q Consensus       158 --~~~---~-----------h~----~~v~~~~~~~~~~~l~s~~----~d~~i~iw--~~~~~~~~~~~~~~~~~~~~~  211 (352)
                        ...   .           |.    .....++|+|++.++++.+    ..+.+.+.  ++.... ...+...    ..+
T Consensus       205 ~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk-~l~rP~~----~lp  279 (434)
T KOG1009|consen  205 LDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK-DLKRPAA----RLP  279 (434)
T ss_pred             eeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccc-cccCcee----ecC
Confidence              000   0           11    1234567899998887643    12222111  000100 0001111    112


Q ss_pred             CCcccEEEEEEcCC-----------------CCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEE
Q 018675          212 GHSSTIWALSFNAK-----------------GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV  274 (352)
Q Consensus       212 ~h~~~i~~l~~~~~-----------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  274 (352)
                      .-..+...+.|+|-                 .+.+++....+.|.+||.+.           ..+++...+.|-..++.+
T Consensus       280 ~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~-----------~~P~~~v~nihy~~iTDi  348 (434)
T KOG1009|consen  280 SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQT-----------LEPLAVVDNIHYSAITDI  348 (434)
T ss_pred             CCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccc-----------ccceEEEeeeeeeeecce
Confidence            23344555555441                 11233333456789998642           245666667788889999


Q ss_pred             EecCCc-eEEecCCCCeEEEEEccCC
Q 018675          275 HWSREG-IIASGAADDSVQFFVESKD  299 (352)
Q Consensus       275 ~~~~~~-~~~s~~~d~~v~~~~~~~~  299 (352)
                      +|++++ .++..+.||..-+......
T Consensus       349 aws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  349 AWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             eecCCCcEEEEeccCCceEEEEEcch
Confidence            999987 7888899998766654443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.71  E-value=4.5e-16  Score=135.15  Aligned_cols=207  Identities=21%  Similarity=0.359  Sum_probs=149.5

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccc
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE  118 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~  118 (352)
                      ...|+-+++||.+.+-+....-     . .....|.+++.+..|+|||.-|++++.||.|++|.. ++  ....++....
T Consensus        75 ~d~~~i~s~DGkf~il~k~~rV-----E-~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sG--MLRStl~Q~~  145 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSARV-----E-RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SG--MLRSTVVQNE  145 (737)
T ss_pred             cceEEEEcCCceEEEecccchh-----h-hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cc--hHHHHHhhcC
Confidence            4678888999999988654321     1 122569999999999999999999999999999964 33  2344555667


Q ss_pred             CCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 018675          119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD  198 (352)
Q Consensus       119 ~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~  198 (352)
                      .+|.|++|.|+.+.++-|..+ .+.+=-+...  .+ +-..++|..-|.+++|+|..+.+++|++|-..++||....   
T Consensus       146 ~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n--~k-~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~---  218 (737)
T KOG1524|consen  146 ESIRCARWAPNSNSIVFCQGG-HISIKPLAAN--SK-IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA---  218 (737)
T ss_pred             ceeEEEEECCCCCceEEecCC-eEEEeecccc--cc-eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc---
Confidence            889999999987765555443 3444333322  12 3457789999999999999999999999999999975432   


Q ss_pred             CceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC
Q 018675          199 NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR  278 (352)
Q Consensus       199 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  278 (352)
                            .+ .....|+.+|++++|+|+ +.++.++. +++|+                       .....++|+.++|++
T Consensus       219 ------~L-f~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~-----------------------~~p~~GSifnlsWS~  266 (737)
T KOG1524|consen  219 ------NL-FTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF-----------------------SSPRVGSIFNLSWSA  266 (737)
T ss_pred             ------cc-ccCChhccceeeeeeccc-cceeeeee-eeeee-----------------------cCCCccceEEEEEcC
Confidence                  11 123468999999999999 55555543 34441                       122456799999999


Q ss_pred             Cc-eEEecCCCCeEEE
Q 018675          279 EG-IIASGAADDSVQF  293 (352)
Q Consensus       279 ~~-~~~s~~~d~~v~~  293 (352)
                      +| .++.|...|.+.+
T Consensus       267 DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  267 DGTQATCGTSTGQLIV  282 (737)
T ss_pred             CCceeeccccCceEEE
Confidence            98 5777777777654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=3.3e-16  Score=132.29  Aligned_cols=199  Identities=19%  Similarity=0.249  Sum_probs=141.1

Q ss_pred             EEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEcc
Q 018675           25 WSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDV  104 (352)
Q Consensus        25 ~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  104 (352)
                      -+++|+++      +..+++++.||++|+|++..-..     ...+..|.+.|.++.|+|||+.|++-+.| ...+|+..
T Consensus       148 k~vaf~~~------gs~latgg~dg~lRv~~~Ps~~t-----~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~  215 (398)
T KOG0771|consen  148 KVVAFNGD------GSKLATGGTDGTLRVWEWPSMLT-----ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN  215 (398)
T ss_pred             eEEEEcCC------CCEeeeccccceEEEEecCcchh-----hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec
Confidence            45778876      46899999999999999654322     12234588999999999999999999999 89999987


Q ss_pred             CCceeeeEeec--cccCCeeEEEECCCC---cE--EEEeeCCCcEEEEecCCCCe--eEEEEEeecCccCeeEEEEcCCC
Q 018675          105 GGDYECVATLE--GHENEVKSVSWNASG---TL--LATCGRDKSVWIWEVMPGNE--FECVSVLQGHAQDVKMVQWHPTM  175 (352)
Q Consensus       105 ~~~~~~~~~~~--~h~~~v~~v~~~~~~---~~--l~s~~~d~~v~vwd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~  175 (352)
                      ++-  +++...  .-+.....+.|+.++   .+  ++....-+.|+.||+.....  .........-...|.+++.++++
T Consensus       216 ~g~--~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG  293 (398)
T KOG0771|consen  216 TGA--ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG  293 (398)
T ss_pred             cCc--hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC
Confidence            762  233222  233456678888766   33  33334446677776532111  00111111223468999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          176 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       176 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      ++++.|+.||.|.|++...        .+.+.-....|...|+.|.|+|+.+++++-+.|.+..+..+..
T Consensus       294 kf~AlGT~dGsVai~~~~~--------lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  294 KFLALGTMDGSVAIYDAKS--------LQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cEEEEeccCCcEEEEEece--------eeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999999999996543        2223333457999999999999999999999999999987643

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=6.6e-16  Score=130.49  Aligned_cols=202  Identities=23%  Similarity=0.266  Sum_probs=138.0

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEE
Q 018675           78 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS  157 (352)
Q Consensus        78 ~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  157 (352)
                      .+++|+++|..+++|+.||++++|+.+..  ..+.....|.+.|.++.|+|||++|++-+.| ..+||+...+.......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc--hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            67899999999999999999999996543  2344556889999999999999999999999 89999997763322111


Q ss_pred             EeecCccCeeEEEEcCCC---CEE--EEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE
Q 018675          158 VLQGHAQDVKMVQWHPTM---DVL--FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       158 ~~~~h~~~v~~~~~~~~~---~~l--~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                      . ..-......+.|+.+.   .+.  +....-+.|+.|++..-..++.   ......... ...|.+++.+++|++++.|
T Consensus       225 ~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~---l~~~~~~~~-~~siSsl~VS~dGkf~AlG  299 (398)
T KOG0771|consen  225 P-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF---LRLRKKIKR-FKSISSLAVSDDGKFLALG  299 (398)
T ss_pred             C-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc---cchhhhhhc-cCcceeEEEcCCCcEEEEe
Confidence            1 1122334456676554   222  2333445666665432221111   111111112 2479999999999999999


Q ss_pred             eCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeee
Q 018675          233 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK  312 (352)
Q Consensus       233 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~  312 (352)
                      +.||.|.|++...  ++                                                           .+..
T Consensus       300 T~dGsVai~~~~~--lq-----------------------------------------------------------~~~~  318 (398)
T KOG0771|consen  300 TMDGSVAIYDAKS--LQ-----------------------------------------------------------RLQY  318 (398)
T ss_pred             ccCCcEEEEEece--ee-----------------------------------------------------------eeEe
Confidence            9999999997521  00                                                           0001


Q ss_pred             cccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          313 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       313 ~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ..+.|...|+.+.|+|+.+ .+++.+.|..+.|-.+.
T Consensus       319 vk~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  319 VKEAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTKLA  354 (398)
T ss_pred             ehhhheeeeeeEEEcCCcC-cccccccCCceeEEEEe
Confidence            1357888999999999876 57788889888887764

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.68  E-value=1.8e-15  Score=133.96  Aligned_cols=231  Identities=16%  Similarity=0.288  Sum_probs=155.7

Q ss_pred             eCCCeEEEEecCCCceeeeeeeeee-cceecceEEEEECC-CCCEEEEEeCCCcEEEEEccCCce-----eeeEeecccc
Q 018675           46 SGDKTVRIWEQSASSRFWNCKAVLE-EMHTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDY-----ECVATLEGHE  118 (352)
Q Consensus        46 s~D~~v~~w~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~i~~~~~~~~-----~~~~~~~~h~  118 (352)
                      |.-|.|-||++....++-  ...+. -.....|+.+.|.| |...||+++.||.|++|....+..     .+...+..|.
T Consensus       600 g~gG~iai~el~~PGrLP--Dgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~  677 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLP--DGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG  677 (1012)
T ss_pred             CCCceEEEEEcCCCCCCC--cccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence            457899999987665421  11111 12346789999999 778899999999999998754332     3345678899


Q ss_pred             CCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 018675          119 NEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS  197 (352)
Q Consensus       119 ~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~  197 (352)
                      ..|+++.|+| -.+.|++++.|-+|++||++...   ....+.+|+..|..++|+|+|+.+++...||+|++|.......
T Consensus       678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~---~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAK---LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             ceEEEEEecchhhhHhhhhhccceeeeeehhhhh---hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence            9999999999 45689999999999999997654   3456889999999999999999999999999999996554322


Q ss_pred             CCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC----CcEEEEcCCccccccCCCCccceeeEEeecccCcc--e
Q 018675          198 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD----LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT--I  271 (352)
Q Consensus       198 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i  271 (352)
                      .       +.+....-+..-..+.|--+|++++..|-|    ..|.+|+.....         ..++.+..---...  +
T Consensus       755 p-------v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~---------~~pl~t~~lDvaps~Lv  818 (1012)
T KOG1445|consen  755 P-------VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD---------LRPLYTQVLDVAPSPLV  818 (1012)
T ss_pred             c-------cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc---------CCcceeeeecccCcccc
Confidence            1       111111111223346677789998877755    467777653211         01121111000011  1


Q ss_pred             EEEEecCCceEEecCCCCeEEEEEcc
Q 018675          272 FSVHWSREGIIASGAADDSVQFFVES  297 (352)
Q Consensus       272 ~~~~~~~~~~~~s~~~d~~v~~~~~~  297 (352)
                      -....+.+-.+++|-.|..|++|...
T Consensus       819 P~YD~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  819 PHYDYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             ccccCCCceEEEecCCCceEEEEEec
Confidence            11222223368899999999998653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=1e-14  Score=136.04  Aligned_cols=260  Identities=18%  Similarity=0.192  Sum_probs=168.4

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCc----eeeeeeeeeecc---eecceEEEEECCCCCEEEEEeC
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS----RFWNCKAVLEEM---HTRTVRSCAWSPSGKLLATASF   94 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~----~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~   94 (352)
                      ..|+.+.+-..+.    ..++++|+.||.||||+-....    ++.+.-..+...   -.+.=.-+.|.....+|+++|.
T Consensus      1110 t~Vs~l~liNe~D----~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd 1185 (1387)
T KOG1517|consen 1110 TRVSDLELINEQD----DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD 1185 (1387)
T ss_pred             Cccceeeeecccc----hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC
Confidence            4677777755432    4689999999999999743321    110100001000   0111133567776666666666


Q ss_pred             CCcEEEEEccCCceeeeEeeccccCCeeEEEEC-CCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccC--eeEEEE
Q 018675           95 DATTCIWEDVGGDYECVATLEGHENEVKSVSWN-ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD--VKMVQW  171 (352)
Q Consensus        95 d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~--v~~~~~  171 (352)
                      -..|+|||..... .+.-...+.+.-|+++.-+ ..|+.+++|-.||.|++||.+....-..+.....|+..  |..+.+
T Consensus      1186 ~r~IRIWDa~~E~-~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQ-VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred             eeEEEEEecccce-eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence            8899999976432 2222223444567776543 35789999999999999998766554456667788876  999999


Q ss_pred             cCCCCE-EEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          172 HPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       172 ~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      .+.|-. |++|+.+|.|++||++.....++.   ++.. ...-++..+++..|++...+|+|+. +.|+||++....+..
T Consensus      1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~---~iv~-~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFL---TIVA-HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNI 1339 (1387)
T ss_pred             ecCCCcceeeeccCCeEEEEecccCcccccc---eeee-ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcc
Confidence            886654 999999999999998764222221   1110 0011345889999999999999998 999999976433222


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEcc
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES  297 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~  297 (352)
                      ..      .-..+.+.....+.++.|.|-. .+++|+.|.+|.+|...
T Consensus      1340 ~k------~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1340 IK------YNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             cc------cCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence            11      1112223334556788888865 67888889999998554

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=4.4e-15  Score=129.44  Aligned_cols=171  Identities=19%  Similarity=0.282  Sum_probs=129.1

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEe-eccccCCeeEEEECC--CCcEEEEeeCCCcEEEEec
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVAT-LEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEV  147 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~-~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~vwd~  147 (352)
                      ..|++-|+++.|+.+|.+|++|+.|-.+.|||....+  ++.. -.+|...|.++.|-|  +..++++|..|..|+++|+
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K--llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl  124 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK--LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL  124 (758)
T ss_pred             ccccceecceeecCCCCEEeecCCcceEEeecchhcc--eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence            4599999999999999999999999999999976433  3333 368999999999987  4568999999999999998


Q ss_pred             CCCC-------eeEEEEEeecCccCeeEEEEcCCC-CEEEEEeCCCcEEEEecCCCCCCCc--eeEeeeeccCCCCcccE
Q 018675          148 MPGN-------EFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNW--HCVQTISESNNGHSSTI  217 (352)
Q Consensus       148 ~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~h~~~i  217 (352)
                      ...+       .......+..|...|..++--|.+ ..+.++++||+|+-+|+++...-+.  .+...+... ...--..
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny-~~~liel  203 (758)
T KOG1310|consen  125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY-NPQLIEL  203 (758)
T ss_pred             ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh-chhhhee
Confidence            6321       122345567899999999988887 5788999999999999987432111  011111111 1122356


Q ss_pred             EEEEEcCCC-CEEEEEeCCCcEEEEcCC
Q 018675          218 WALSFNAKG-DKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       218 ~~l~~~~~~-~~l~s~~~dg~i~iwd~~  244 (352)
                      .+++.+|.. .+|+.|+.|-..++||.+
T Consensus       204 k~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  204 KCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             eeeeecCCCCceEEecCCCchhhhhhhh
Confidence            788999975 578899999999999954

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=4.9e-13  Score=122.85  Aligned_cols=285  Identities=21%  Similarity=0.287  Sum_probs=178.2

Q ss_pred             eCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccC--CceeeeEeeccccCCeeE
Q 018675           46 SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG--GDYECVATLEGHENEVKS  123 (352)
Q Consensus        46 s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~--~~~~~~~~~~~h~~~v~~  123 (352)
                      --+..+.+|+.....+. .........|...+++.+++|+++++|+|..||.|.+|....  ++......+.=|...|++
T Consensus       178 ~~~~~~~~~~v~~~~~~-~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~  256 (792)
T KOG1963|consen  178 VHMCKIHIYFVPKHTKH-TSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS  256 (792)
T ss_pred             EEeeeEEEEEeccccee-eccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence            34567778877654321 112222245777889999999999999999999999997654  222222334457889999


Q ss_pred             EEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeE
Q 018675          124 VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCV  203 (352)
Q Consensus       124 v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~  203 (352)
                      ++|+++|.+|++||..+-+.+|.+..++. +-   +..-...|..+.++|++......-.|+.|.+-...+-.  ....+
T Consensus       257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qf---LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~--~k~tI  330 (792)
T KOG1963|consen  257 LSFSSDGAYLLSGGREGVLVLWQLETGKK-QF---LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE--IKSTI  330 (792)
T ss_pred             eEEecCCceEeecccceEEEEEeecCCCc-cc---ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh--hhhhc
Confidence            99999999999999999999999866542 22   22234679999999999998888899999988543211  11111


Q ss_pred             eeeecc----CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCc------ceEE
Q 018675          204 QTISES----NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR------TIFS  273 (352)
Q Consensus       204 ~~~~~~----~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~~  273 (352)
                      ..+...    ..+.+.-...++++|.-+.++-.+..|.|.+||+.......       +...+...++..      .+.+
T Consensus       331 sgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~-------~~~v~~~n~~~~~~n~~v~ita  403 (792)
T KOG1963|consen  331 SGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIY-------KLQVCDENYSDGDVNIQVGITA  403 (792)
T ss_pred             cCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceee-------eEEEEeecccCCcceeEEeeee
Confidence            111111    11234455678899977778889999999999975322111       000000111111      1222


Q ss_pred             EEecCCc-eEEec--------CCCC--eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcc-eEEEecCCC
Q 018675          274 VHWSREG-IIASG--------AADD--SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR-LLASASDDG  341 (352)
Q Consensus       274 ~~~~~~~-~~~s~--------~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-~l~s~~~Dg  341 (352)
                      +..+..+ .+++.        ..||  .+++|...+..    ...........+|...+.+..+.+..+. ..+|+|.||
T Consensus       404 v~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~----kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg  479 (792)
T KOG1963|consen  404 VARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS----KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG  479 (792)
T ss_pred             ehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc----ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC
Confidence            2222222 22222        1222  35677554321    1222222345688877777777654443 578999999


Q ss_pred             eEEEEee
Q 018675          342 MIKIWEL  348 (352)
Q Consensus       342 ~i~iw~~  348 (352)
                      .+|||.+
T Consensus       480 ~~KiW~~  486 (792)
T KOG1963|consen  480 DFKIWVF  486 (792)
T ss_pred             eEEEEEE
Confidence            9999998

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.1e-12  Score=103.56  Aligned_cols=282  Identities=17%  Similarity=0.231  Sum_probs=172.5

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCC---c--eeeeeeeeeecceecceEEEEECCCCCEEEEEeCCC
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSAS---S--RFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDA   96 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~---~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~   96 (352)
                      ..|++-+|+|.      .++|+.|+.+|++.+..+.+-   .  ...+.+-.-+..|.++|+.++|.  .++|++|+ ||
T Consensus        11 ~tvf~qa~sp~------~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG   81 (325)
T KOG0649|consen   11 NTVFAQAISPS------KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DG   81 (325)
T ss_pred             HHHHHHhhCCc------ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-Cc
Confidence            45666677775      589999999999999976431   1  11111222236799999999998  35666654 59


Q ss_pred             cEEEEEccCCc----eeeeEe--ecccc-----CCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccC
Q 018675           97 TTCIWEDVGGD----YECVAT--LEGHE-----NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD  165 (352)
Q Consensus        97 ~i~i~~~~~~~----~~~~~~--~~~h~-----~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~  165 (352)
                      .++-|......    .+....  ...|.     -.|+++...|..+-++.++.|+.+.-||+..++   ....+.+|+.-
T Consensus        82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~---i~r~~rGHtDY  158 (325)
T KOG0649|consen   82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR---IQREYRGHTDY  158 (325)
T ss_pred             eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE---EEEEEcCCcce
Confidence            99988642110    000000  11122     357888888877777778899999999997764   45778999999


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccC------CCCcccEEEEEEcCCCCEEEEEeCCCcEE
Q 018675          166 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN------NGHSSTIWALSFNAKGDKLVSCSDDLTIK  239 (352)
Q Consensus       166 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~------~~h~~~i~~l~~~~~~~~l~s~~~dg~i~  239 (352)
                      +.++.-......+++|++||++++||....     ++.+.+....      ..-..+|-+++-+.  ..|+ ||..-.+.
T Consensus       159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt~-----k~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlv-CGgGp~ls  230 (325)
T KOG0649|consen  159 VHSVVGRNANGQILSGAEDGTVRVWDTKTQ-----KHVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLV-CGGGPKLS  230 (325)
T ss_pred             eeeeeecccCcceeecCCCccEEEEecccc-----ceeEEeccccChhhcCcccCceeEEEeccC--ceEE-ecCCCcee
Confidence            999988666667899999999999976543     3344443211      11245666676543  3455 44567899


Q ss_pred             EEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCc
Q 018675          240 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM  319 (352)
Q Consensus       240 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~  319 (352)
                      +|.++...           ..+.+.  ....+..+.|..+ .+++++..+-++-|.....          +......-.-
T Consensus       231 lwhLrsse-----------~t~vfp--ipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~Gv----------l~a~ip~~s~  286 (325)
T KOG0649|consen  231 LWHLRSSE-----------STCVFP--IPARVHLVDFVDD-CVLIGGEGNHVQSYTLNGV----------LQANIPVEST  286 (325)
T ss_pred             EEeccCCC-----------ceEEEe--cccceeEeeeecc-eEEEeccccceeeeeeccE----------EEEeccCCcc
Confidence            99875321           112222  1223444555444 4555655666666654431          1111112222


Q ss_pred             ceeEEEecCCCcceEEEecCCCeEEEEe
Q 018675          320 DVNSVQWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       320 ~i~~~~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      ..+..+|+-..-++|..+|-...+.|+.
T Consensus       287 ~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  287 ACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             ceeeecccCCceEEEEecccceeeeeee
Confidence            3566666544345676777777777753

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.61  E-value=8.1e-12  Score=110.32  Aligned_cols=264  Identities=11%  Similarity=0.170  Sum_probs=156.2

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEe-eCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASC-SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~-s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      +.+.++. +.+....++++|+      +++|+.+ ..++.|.+|++.....+ .......  .......++|+|++++++
T Consensus        26 ~~~~~~~-~~~~~~~l~~spd------~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~--~~~~p~~i~~~~~g~~l~   95 (330)
T PRK11028         26 TLLQVVD-VPGQVQPMVISPD------KRHLYVGVRPEFRVLSYRIADDGAL-TFAAESP--LPGSPTHISTDHQGRFLF   95 (330)
T ss_pred             eeeeEEe-cCCCCccEEECCC------CCEEEEEECCCCcEEEEEECCCCce-EEeeeec--CCCCceEEEECCCCCEEE
Confidence            3444443 3355667899987      4566554 46889999998632221 1111111  223457899999999888


Q ss_pred             EEeC-CCcEEEEEccCCc-e-eeeEeeccccCCeeEEEECCCCcEEEE-eeCCCcEEEEecCCCCeeEEE----EEeecC
Q 018675           91 TASF-DATTCIWEDVGGD-Y-ECVATLEGHENEVKSVSWNASGTLLAT-CGRDKSVWIWEVMPGNEFECV----SVLQGH  162 (352)
Q Consensus        91 s~~~-d~~i~i~~~~~~~-~-~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~v~vwd~~~~~~~~~~----~~~~~h  162 (352)
                      +++. ++.+.+|+..... . .....+. +.....+++++|+++++++ ...+++|.+||+.........    ..... 
T Consensus        96 v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-  173 (330)
T PRK11028         96 SASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-  173 (330)
T ss_pred             EEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-
Confidence            7764 7889999875321 1 1222222 2345678889999988754 456799999998653221110    01111 


Q ss_pred             ccCeeEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCCCceeEeeeeccCC--CCcccEEEEEEcCCCCEEEEEe-CCCcE
Q 018675          163 AQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNN--GHSSTIWALSFNAKGDKLVSCS-DDLTI  238 (352)
Q Consensus       163 ~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~l~~~~~~~~l~s~~-~dg~i  238 (352)
                      ......+.|+|++++++++.. ++.|.+|++... .......+.+.....  .+......+.++|++++++++. .++.|
T Consensus       174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I  252 (330)
T PRK11028        174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI  252 (330)
T ss_pred             CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE
Confidence            234567899999999988876 899999988632 112223333321110  1122334688999999988875 47899


Q ss_pred             EEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEE-ecCCCCeEEEEEcc
Q 018675          239 KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIA-SGAADDSVQFFVES  297 (352)
Q Consensus       239 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~-s~~~d~~v~~~~~~  297 (352)
                      .+|+++....       .......+..  ......+.+++++ +++ +...++++.+|...
T Consensus       253 ~v~~i~~~~~-------~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        253 SVFSVSEDGS-------VLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEEEeCCCC-------eEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            9998742110       0111111111  1233456777776 444 44448899998653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=1.6e-13  Score=125.04  Aligned_cols=236  Identities=21%  Similarity=0.287  Sum_probs=146.9

Q ss_pred             CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC---CcEEEEEccCCceeeeEeeccccCCeeEE
Q 018675           48 DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSV  124 (352)
Q Consensus        48 D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~i~i~~~~~~~~~~~~~~~~h~~~v~~v  124 (352)
                      +..+.+||......     ..+ ..|...+.+.+|+|||+.|+.++.+   ..|.+||..+++...+....+|   ...+
T Consensus       183 ~~~i~i~d~dg~~~-----~~l-t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~  253 (429)
T PRK01742        183 PYEVRVADYDGFNQ-----FIV-NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAP  253 (429)
T ss_pred             eEEEEEECCCCCCc-----eEe-ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCce
Confidence            46899998765421     111 2356688999999999999988754   3689999877654444444443   3468


Q ss_pred             EECCCCcEEEEee-CCCcEEEE--ecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEe-CCCcEEEEecCCCCCCCc
Q 018675          125 SWNASGTLLATCG-RDKSVWIW--EVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNW  200 (352)
Q Consensus       125 ~~~~~~~~l~s~~-~d~~v~vw--d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~  200 (352)
                      +|+|+|+.|+.++ .++.+.+|  |+..+.    ...+..+...+....|+|+++.++..+ .++...||.+..... . 
T Consensus       254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~-~-  327 (429)
T PRK01742        254 AFSPDGSRLAFASSKDGVLNIYVMGANGGT----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG-G-  327 (429)
T ss_pred             eECCCCCEEEEEEecCCcEEEEEEECCCCC----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC-C-
Confidence            9999999887764 67876666  443332    223444555677899999999776555 578888886543211 1 


Q ss_pred             eeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc
Q 018675          201 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG  280 (352)
Q Consensus       201 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  280 (352)
                        ...+     .+..  ....|+|+|++|+..+.++ +.+||+......         .+.  ...   ...+..|+|++
T Consensus       328 --~~~l-----~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~---------~lt--~~~---~~~~~~~sPdG  383 (429)
T PRK01742        328 --ASLV-----GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE---------VLS--STF---LDESPSISPNG  383 (429)
T ss_pred             --eEEe-----cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE---------Eec--CCC---CCCCceECCCC
Confidence              1111     1222  3468999999998887765 445876432111         000  011   12345678877


Q ss_pred             -eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCC
Q 018675          281 -IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG  329 (352)
Q Consensus       281 -~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~  329 (352)
                       +++.++.++...+|....   .++    ....+..+|.+.+...+|||-
T Consensus       384 ~~i~~~s~~g~~~~l~~~~---~~G----~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        384 IMIIYSSTQGLGKVLQLVS---ADG----RFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CEEEEEEcCCCceEEEEEE---CCC----CceEEccCCCCCCCCcccCCC
Confidence             677777777776663311   011    122344577888999999984

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.59  E-value=5e-13  Score=121.99  Aligned_cols=253  Identities=15%  Similarity=0.212  Sum_probs=165.7

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCcee-eeeeeeeecceecceEEEEECCCC--CEEEEEeCCCc
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRF-WNCKAVLEEMHTRTVRSCAWSPSG--KLLATASFDAT   97 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~d~~   97 (352)
                      ...|.|+.|+|.+     +.++|.|..+|+|-+||+...... -........-|..+++.+.|..+.  .-+++++.||.
T Consensus       242 ~s~v~~~~f~p~~-----p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~  316 (555)
T KOG1587|consen  242 PSEVTCLKFCPFD-----PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGS  316 (555)
T ss_pred             CCceeEEEeccCC-----cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCc
Confidence            4689999999976     578999999999999998765431 112223334588999999997654  44999999999


Q ss_pred             EEEEEccCCce----eeeEeec------cccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCe-----eEEEEEeec
Q 018675           98 TCIWEDVGGDY----ECVATLE------GHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNE-----FECVSVLQG  161 (352)
Q Consensus        98 i~i~~~~~~~~----~~~~~~~------~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~-----~~~~~~~~~  161 (352)
                      |..|+...-..    .+.....      .-...+++++|.+ +...|+.|+++|.|.-=.......     ++....+..
T Consensus       317 i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~  396 (555)
T KOG1587|consen  317 ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT  396 (555)
T ss_pred             EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc
Confidence            99997532110    0000000      1123578899977 556799999999876622211111     122334556


Q ss_pred             CccCeeEEEEcCCCCEEEEEeCCCcEEEEecC-CCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-EEEEEeCCCcEE
Q 018675          162 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE-DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCSDDLTIK  239 (352)
Q Consensus       162 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s~~~dg~i~  239 (352)
                      |...|.++.++|-+..++..+.|-.++||.-. ....     +.    ....+...|.+++|||... .++++..||.+-
T Consensus       397 h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P-----l~----~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~  467 (555)
T KOG1587|consen  397 HIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP-----LL----SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD  467 (555)
T ss_pred             cCcceEeeecCCCccceeeeeccceeEeccccCCCCc-----ch----hhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence            78889999999976655544459999999543 1111     11    1123455699999999865 466777899999


Q ss_pred             EEcCCccccccCCCCccceeeEEeecccCcceEEEEecCC-ceEEecCCCCeEEEEEcc
Q 018675          240 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVES  297 (352)
Q Consensus       240 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~  297 (352)
                      +||+......         +..+.. ........+.|++. ..++.|...|++.++...
T Consensus       468 iWDLl~~~~~---------Pv~s~~-~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  468 IWDLLQDDEE---------PVLSQK-VCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             hhhhhccccC---------Cccccc-ccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            9998643211         111111 12344556777774 478899999999999764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=4e-12  Score=100.54  Aligned_cols=205  Identities=15%  Similarity=0.207  Sum_probs=139.0

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeee---ccee-----cceEEEEECCC
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLE---EMHT-----RTVRSCAWSPS   85 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~---~~h~-----~~v~~~~~s~~   85 (352)
                      +...++|.+.|+.+.|+.        .+|++|+ ||.|+-|.+....+...++...+   -.|.     -.|+++.+.|.
T Consensus        55 iv~eqahdgpiy~~~f~d--------~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~  125 (325)
T KOG0649|consen   55 IVPEQAHDGPIYYLAFHD--------DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS  125 (325)
T ss_pred             eeeccccCCCeeeeeeeh--------hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC
Confidence            345589999999999984        3788875 69999998754322111111111   1122     35789999998


Q ss_pred             CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEee-----
Q 018675           86 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ-----  160 (352)
Q Consensus        86 ~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-----  160 (352)
                      ..-++.++.|+.+.-||.+++++  ..++++|+.-|.++.-......+++|++||++++||.+.++....+..++     
T Consensus       126 enSi~~AgGD~~~y~~dlE~G~i--~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~l  203 (325)
T KOG0649|consen  126 ENSILFAGGDGVIYQVDLEDGRI--QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLL  203 (325)
T ss_pred             CCcEEEecCCeEEEEEEecCCEE--EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhc
Confidence            88888888999999999998865  45789999999999885555678899999999999998776444433322     


Q ss_pred             -cCc-cCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcE
Q 018675          161 -GHA-QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTI  238 (352)
Q Consensus       161 -~h~-~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i  238 (352)
                       .|. .-|.+++-+  ...++.| ....+.+|.++....     ...+.     -..++..+.|..  +.++++|..+.|
T Consensus       204 Rp~~g~wigala~~--edWlvCG-gGp~lslwhLrsse~-----t~vfp-----ipa~v~~v~F~~--d~vl~~G~g~~v  268 (325)
T KOG0649|consen  204 RPDWGKWIGALAVN--EDWLVCG-GGPKLSLWHLRSSES-----TCVFP-----IPARVHLVDFVD--DCVLIGGEGNHV  268 (325)
T ss_pred             CcccCceeEEEecc--CceEEec-CCCceeEEeccCCCc-----eEEEe-----cccceeEeeeec--ceEEEeccccce
Confidence             222 224455543  4455554 466789998765432     22221     124566677753  457788888888


Q ss_pred             EEEcCC
Q 018675          239 KIWGAD  244 (352)
Q Consensus       239 ~iwd~~  244 (352)
                      .-|.+.
T Consensus       269 ~~~~l~  274 (325)
T KOG0649|consen  269 QSYTLN  274 (325)
T ss_pred             eeeeec
Confidence            888654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.54  E-value=3.3e-11  Score=100.79  Aligned_cols=185  Identities=16%  Similarity=0.232  Sum_probs=129.3

Q ss_pred             EEEEeeCCC--eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeec---
Q 018675           41 VFASCSGDK--TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE---  115 (352)
Q Consensus        41 ~l~s~s~D~--~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~---  115 (352)
                      ++|-.+.+.  .+++.+......+  |.    .....+|.++.++-  ++|+++-.+. |.|||..+-  +.+.++.   
T Consensus        58 LvaiV~~~qpr~Lkv~~~Kk~~~I--Ce----~~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~M--klLhTI~t~~  126 (391)
T KOG2110|consen   58 LVAIVSIKQPRKLKVVHFKKKTTI--CE----IFFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDM--KLLHTIETTP  126 (391)
T ss_pred             eeEEEecCCCceEEEEEcccCceE--EE----EecCCceEEEEEcc--ceEEEEEccc-EEEEecccc--eeehhhhccC
Confidence            455555443  4777776544322  11    12356788888874  4666666555 999998654  3344432   


Q ss_pred             cccCCeeEEEECCCCcEEEE--eeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCc-EEEEec
Q 018675          116 GHENEVKSVSWNASGTLLAT--CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT-IKVWWA  192 (352)
Q Consensus       116 ~h~~~v~~v~~~~~~~~l~s--~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-i~iw~~  192 (352)
                      .+...+.++++++.+.+++-  ....|.|.+||+..-   ..+..+.+|...+.+++|+|+|.+||+||+.|+ ||++.+
T Consensus       127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v  203 (391)
T KOG2110|consen  127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSV  203 (391)
T ss_pred             CCccceEeeccCCCCceEEecCCCCCceEEEEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEc
Confidence            45566777777777777663  234588999998543   456778899999999999999999999999987 689977


Q ss_pred             CCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      .+.+     .+.++....  --..|.+|+|+|++++|++.+..++|.+|.++..
T Consensus       204 ~~G~-----kl~eFRRG~--~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  204 PEGQ-----KLYEFRRGT--YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             CCcc-----EeeeeeCCc--eeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            5542     233332211  1357899999999999999999999999987643

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=6.1e-12  Score=104.87  Aligned_cols=187  Identities=29%  Similarity=0.583  Sum_probs=126.5

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC-CEEEEEeCCCcEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG-KLLATASFDATTCIW  101 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~i~  101 (352)
                      .+..++|++.      -..||.+..|.+||+|+....     +...++..-.+.|+|++|-|.+ ..|+.| .-+.|++|
T Consensus       100 dlr~~aWhqH------~~~fava~nddvVriy~ksst-----~pt~Lks~sQrnvtclawRPlsaselavg-Cr~gIciW  167 (445)
T KOG2139|consen  100 DLRGVAWHQH------IIAFAVATNDDVVRIYDKSST-----CPTKLKSVSQRNVTCLAWRPLSASELAVG-CRAGICIW  167 (445)
T ss_pred             ceeeEeechh------hhhhhhhccCcEEEEeccCCC-----CCceecchhhcceeEEEeccCCcceeeee-ecceeEEE
Confidence            5667899984      246899999999999987652     2233333345789999999965 455554 45669999


Q ss_pred             EccC-Cce---------ee--eEeeccccCCeeEEEECCCCcEEEEeeC-CCcEEEEecCCCCeeEEEEEeecCccCeeE
Q 018675          102 EDVG-GDY---------EC--VATLEGHENEVKSVSWNASGTLLATCGR-DKSVWIWEVMPGNEFECVSVLQGHAQDVKM  168 (352)
Q Consensus       102 ~~~~-~~~---------~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~  168 (352)
                      .... ...         .+  +..-.+| ..|+++.|++||..+++++. |..|.+||...+... ++.  ......+.-
T Consensus       168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~-pL~--~~glgg~sl  243 (445)
T KOG2139|consen  168 SDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI-PLI--PKGLGGFSL  243 (445)
T ss_pred             EcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc-ccc--ccCCCceee
Confidence            6532 110         01  1122344 57999999999999999884 578999998655422 221  123356778


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE-EEeC
Q 018675          169 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSD  234 (352)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-s~~~  234 (352)
                      +.|+||+..++++.-|+..++|....    .|.+..-+.    + .+.|..-+|+|.|.+|+ +++.
T Consensus       244 LkwSPdgd~lfaAt~davfrlw~e~q----~wt~erw~l----g-sgrvqtacWspcGsfLLf~~sg  301 (445)
T KOG2139|consen  244 LKWSPDGDVLFAATCDAVFRLWQENQ----SWTKERWIL----G-SGRVQTACWSPCGSFLLFACSG  301 (445)
T ss_pred             EEEcCCCCEEEEecccceeeeehhcc----cceecceec----c-CCceeeeeecCCCCEEEEEEcC
Confidence            99999999999999999999994322    232221111    1 23788999999998765 4443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=2.1e-12  Score=108.62  Aligned_cols=164  Identities=14%  Similarity=0.197  Sum_probs=124.7

Q ss_pred             ceecceEEEEECCCCCEEEEEeCCCcEEEEEccC----CceeeeEeec-cccCCeeEEEECCCCcEEEEeeCCCcEEEEe
Q 018675           72 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG----GDYECVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWE  146 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~----~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd  146 (352)
                      .|.+-|+++.|+.++++|++|+.|..+++|....    ...+++.... .|.+.|.|++|......+++|+.+++|...|
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD  133 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD  133 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence            4889999999999999999999999999998532    2223455443 3558999999999889999999999999999


Q ss_pred             cCCCCeeEEEEEeecCc---cCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCC-CCceeEeeeeccCCCCcccEEEEEE
Q 018675          147 VMPGNEFECVSVLQGHA---QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS-DNWHCVQTISESNNGHSSTIWALSF  222 (352)
Q Consensus       147 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~h~~~i~~l~~  222 (352)
                      +......   ..+ .|.   ..|-.+.-+|..+.+++.+.++.+.+||.++... ....|..       .......++-|
T Consensus       134 iEt~qsi---~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A-------N~~~~F~t~~F  202 (609)
T KOG4227|consen  134 IETKQSI---YVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA-------NSGKNFYTAEF  202 (609)
T ss_pred             cccceee---eee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec-------CCCccceeeee
Confidence            9755432   222 233   3788899999999999999999999999877542 1111111       12355677889


Q ss_pred             cCCC-CEEEEEeCCCcEEEEcCCcc
Q 018675          223 NAKG-DKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       223 ~~~~-~~l~s~~~dg~i~iwd~~~~  246 (352)
                      +|.. .+|++.+..+-+.+||.+++
T Consensus       203 ~P~~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  203 HPETPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             cCCCceeEEeccccCCCCceeeccc
Confidence            9965 46778888888999998754

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.52  E-value=2.5e-13  Score=118.31  Aligned_cols=143  Identities=22%  Similarity=0.390  Sum_probs=105.9

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCC--------------cee--eeeeeeee-------cceecc
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSAS--------------SRF--WNCKAVLE-------EMHTRT   76 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~--------------~~~--~~~~~~~~-------~~h~~~   76 (352)
                      .+..|+|+.|-|.+.     ..|+.+-.+|.+.+|+..-.              ..+  .+.+....       ..-+..
T Consensus       218 ~ktsvT~ikWvpg~~-----~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~  292 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSD-----SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGS  292 (636)
T ss_pred             cccceEEEEEEeCCC-----ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccc
Confidence            347899999999652     45666678999999964211              010  01110000       012357


Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEE
Q 018675           77 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV  156 (352)
Q Consensus        77 v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  156 (352)
                      |+..+|+|||++||+.+.||.++|++..+.  +++..++..-+...|++|+|||++|++|++|..|.||.+...   ..+
T Consensus       293 in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er---RVV  367 (636)
T KOG2394|consen  293 INEFAFSPDGKYLATVSQDGFLRIFDFDTQ--ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER---RVV  367 (636)
T ss_pred             ccceeEcCCCceEEEEecCceEEEeeccHH--HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc---eEE
Confidence            788899999999999999999999997654  334555556678999999999999999999999999998644   356


Q ss_pred             EEeecCccCeeEEEEc
Q 018675          157 SVLQGHAQDVKMVQWH  172 (352)
Q Consensus       157 ~~~~~h~~~v~~~~~~  172 (352)
                      ..-++|...|..++|.
T Consensus       368 ARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  368 ARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EeccccccceeeEeec
Confidence            6778899999999887

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.52  E-value=2.4e-13  Score=108.51  Aligned_cols=168  Identities=18%  Similarity=0.254  Sum_probs=124.8

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeee-----ecceecceEEEEECCCCCEEEEEe
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL-----EEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      +-.+.|.|..+.-...   ...+++.|-.+|.|-+||+.++.+....+...     ...|..+|.++.+.+.-..=++|+
T Consensus       148 ~Klgsvmc~~~~~~c~---s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg  224 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACG---STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG  224 (323)
T ss_pred             cccCceeeeecccccc---ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC
Confidence            4556777777544332   23567777789999999998875444333222     134889999999988655567788


Q ss_pred             CCCcEEEEEccC--CceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           94 FDATTCIWEDVG--GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        94 ~d~~i~i~~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      .+..+..|....  +..+......-.+-.|..+.+.||++.++|+++|+.++||.-+..+   ++..++-|...|++++|
T Consensus       225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~---pLAVLkyHsagvn~vAf  301 (323)
T KOG0322|consen  225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN---PLAVLKYHSAGVNAVAF  301 (323)
T ss_pred             ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC---chhhhhhhhcceeEEEe
Confidence            888888887543  2222222333334568889999999999999999999999876544   45667779999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEec
Q 018675          172 HPTMDVLFSCSYDNTIKVWWA  192 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~  192 (352)
                      +|+-..++++|.|++|.+|++
T Consensus       302 spd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  302 SPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCCCchhhhccCCceEEeeec
Confidence            999899999999999999964

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.4e-12  Score=117.41  Aligned_cols=197  Identities=18%  Similarity=0.170  Sum_probs=129.3

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEeeCC---CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGD---KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D---~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..+..|...|.+..|+|+      ++.++.++.+   .+|.+|++.++...    . +.. .......++|+|||+.|+.
T Consensus       197 ~~lt~~~~~v~~p~wSPD------G~~la~~s~~~~~~~i~i~dl~tg~~~----~-l~~-~~g~~~~~~wSPDG~~La~  264 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPD------GSKLAYVSFENKKSQLVVHDLRSGARK----V-VAS-FRGHNGAPAFSPDGSRLAF  264 (429)
T ss_pred             eEeccCCCccccceEcCC------CCEEEEEEecCCCcEEEEEeCCCCceE----E-Eec-CCCccCceeECCCCCEEEE
Confidence            345678888999999997      4677777654   47999998765321    1 101 1223446899999998887


Q ss_pred             Ee-CCCcEEEEE--ccCCceeeeEeeccccCCeeEEEECCCCcEEEEee-CCCcEEEEecCCCCeeEEEEEeecCccCee
Q 018675           92 AS-FDATTCIWE--DVGGDYECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGNEFECVSVLQGHAQDVK  167 (352)
Q Consensus        92 ~~-~d~~i~i~~--~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~  167 (352)
                      ++ .++...||.  ..++.   ...+..+...+....|+|+|+.|+.++ .++...+|++.......  ..+ .+..  .
T Consensus       265 ~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~--~~l-~~~~--~  336 (429)
T PRK01742        265 ASSKDGVLNIYVMGANGGT---PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA--SLV-GGRG--Y  336 (429)
T ss_pred             EEecCCcEEEEEEECCCCC---eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEe-cCCC--C
Confidence            65 688777764  33443   234455667788999999999766554 57888899875332211  112 2322  3


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          168 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      ...|+|+++.++..+.++ +.+||+....   ..   .+..   .+  ...++.|+|+|++|+.++.++..++|.+
T Consensus       337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~---~~---~lt~---~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        337 SAQISADGKTLVMINGDN-VVKQDLTSGS---TE---VLSS---TF--LDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CccCCCCCCEEEEEcCCC-EEEEECCCCC---eE---EecC---CC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            467999999988877765 5557764432   11   1111   11  1235789999999999999998888864

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1e-12  Score=113.38  Aligned_cols=269  Identities=18%  Similarity=0.277  Sum_probs=178.1

Q ss_pred             ceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCC--CcEEEEeeCCCcEEEEecCC
Q 018675           72 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMP  149 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~vwd~~~  149 (352)
                      .|.+-|+.+.|+..|..|++|+.|..+.+||...+... ..-..+|...|..-.|-|.  ...+++++.||.+++=.+..
T Consensus       140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~-l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~  218 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK-LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE  218 (559)
T ss_pred             CCCCccceeeecccCceeeccCccceEEeehhhccCcc-cccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence            48899999999999999999999999999998766432 2233588888888889874  34699999999999988765


Q ss_pred             CCeeEEEEEeecCccCeeEEEEcCCCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcc---cEEEEEEcCC
Q 018675          150 GNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS---TIWALSFNAK  225 (352)
Q Consensus       150 ~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~---~i~~l~~~~~  225 (352)
                      .+..+....+..|...|..++.-|+.. -|.+++.|+.+.-.|+........  ...    ...+..   ..++++.+|.
T Consensus       219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~--~~c----r~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK--FVC----READEKERVGLYTIAVDPR  292 (559)
T ss_pred             ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce--eee----eccCCccceeeeeEecCCC
Confidence            554444455677888999999888654 578999999998887654322111  111    112223   5778899997


Q ss_pred             CC-EEEEEeCCCcEEEEcCCccccccCCC-CccceeeEEeecccCcceEEEEecC-CceEEecCCCCeEEEEEccCCccc
Q 018675          226 GD-KLVSCSDDLTIKIWGADITRMQSGDG-YASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLI  302 (352)
Q Consensus       226 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~s~~~d~~v~~~~~~~~~~~  302 (352)
                      .. ++++++.|..+++||.+........+ +...-+..-.. -..-.|.++.++. .+-+.+.-.|..|+++.......-
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~  371 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS  371 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccc-cCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence            65 78999999999999875322211111 11111111111 1233477788884 445666667777888844332211


Q ss_pred             c----Ccccceeeeccccc--CcceeEEEe-cCCCcceEEEecCCCeEEEEeec
Q 018675          303 D----GPSYKMLLKKEKAH--DMDVNSVQW-SPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       303 ~----~~~~~~~~~~~~~h--~~~i~~~~~-sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      .    .+......+.++||  ...|-.+-| -|... +++|||+-|.|.||+-.
T Consensus       372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~  424 (559)
T KOG1334|consen  372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKK  424 (559)
T ss_pred             CCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecc
Confidence            0    00011222236677  345666765 67665 68899999999999853

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.50  E-value=6e-12  Score=101.49  Aligned_cols=149  Identities=20%  Similarity=0.381  Sum_probs=98.2

Q ss_pred             EEEEECCCCCEEEEEeC---C-------CcEEEEEccCCceeeeEeec-cccCCeeEEEECCCCcEEEEe--eCCCcEEE
Q 018675           78 RSCAWSPSGKLLATASF---D-------ATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLATC--GRDKSVWI  144 (352)
Q Consensus        78 ~~~~~s~~~~~l~s~~~---d-------~~i~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~--~~d~~v~v  144 (352)
                      -.+.|+|+|+.|+.-..   |       +...+|.....+ .....+. ...++|.+++|+|+|+.|+..  ..++.+.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            34568888877654332   1       234455442211 1122222 234579999999999986554  45679999


Q ss_pred             EecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCC---CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEE
Q 018675          145 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS  221 (352)
Q Consensus       145 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~  221 (352)
                      ||++ .   +.+..+  +...+..+.|+|+|++++.++.+   |.+.+||...     ...+.+.     .| ..+..++
T Consensus        88 yd~~-~---~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-----~~~i~~~-----~~-~~~t~~~  150 (194)
T PF08662_consen   88 YDVK-G---KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-----KKKISTF-----EH-SDATDVE  150 (194)
T ss_pred             EcCc-c---cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-----CEEeecc-----cc-CcEEEEE
Confidence            9985 2   233333  24567889999999999998754   5699998763     2233322     23 3478999


Q ss_pred             EcCCCCEEEEEeC------CCcEEEEcCC
Q 018675          222 FNAKGDKLVSCSD------DLTIKIWGAD  244 (352)
Q Consensus       222 ~~~~~~~l~s~~~------dg~i~iwd~~  244 (352)
                      |+|+|++++++..      |+.++||+..
T Consensus       151 WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  151 WSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EcCCCCEEEEEEeccceeccccEEEEEec
Confidence            9999999998874      7788999764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.48  E-value=3.2e-13  Score=132.09  Aligned_cols=192  Identities=17%  Similarity=0.311  Sum_probs=148.8

Q ss_pred             cCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCc
Q 018675           18 EGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDAT   97 (352)
Q Consensus        18 ~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   97 (352)
                      +.|.+.|.++.-||.+      ++.+||++||.+++|.+..+..+....    ..-+..|+.+.|+.+|.....+..||.
T Consensus      2205 k~~v~~v~r~~sHp~~------~~Yltgs~dgsv~~~~w~~~~~v~~~r----t~g~s~vtr~~f~~qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSD------PYYLTGSQDGSVRMFEWGHGQQVVCFR----TAGNSRVTRSRFNHQGNKFGIVDGDGD 2274 (2439)
T ss_pred             ecccCceeeecCCCCC------ceEEecCCCceEEEEeccCCCeEEEee----ccCcchhhhhhhcccCCceeeeccCCc
Confidence            3466788888888874      789999999999999998876544332    223478999999999999999999999


Q ss_pred             EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEee---CCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC
Q 018675           98 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG---RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT  174 (352)
Q Consensus        98 i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~---~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (352)
                      +.+|...   ..+....++|+.....+.|-.  ..+++++   .++.+.+||.........++  .+|...++++++-|.
T Consensus      2275 l~l~q~~---pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~ 2347 (2439)
T KOG1064|consen 2275 LSLWQAS---PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPK 2347 (2439)
T ss_pred             eeecccC---CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCc
Confidence            9999754   245667789999999998865  5566664   56899999965433333444  679999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          175 MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       175 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      .+.+++|+.+|.+++||+...+     ..         |.-+.    ++ ...++++|+..|.++||++..
T Consensus      2348 ~qllisggr~G~v~l~D~rqrq-----l~---------h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQRQ-----LR---------HTFQA----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             ceEEEecCCcCcEEEeehHHHH-----HH---------HHhhh----hh-hhheeeccCcccceEEEEccc
Confidence            9999999999999999876431     11         22222    33 577899999999999998753

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.48  E-value=8.1e-11  Score=98.48  Aligned_cols=241  Identities=15%  Similarity=0.235  Sum_probs=147.9

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCC--c
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDA--T   97 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~--~   97 (352)
                      ....++.+.|+-+      ...|..|+.|| .++|+.+...+....     ......|...-|+.  .++|..+.+.  .
T Consensus         4 ~~~ti~~~~~Nqd------~~~lsvGs~~G-yk~~~~~~~~k~~~~-----~~~~~~IvEmLFSS--SLvaiV~~~qpr~   69 (391)
T KOG2110|consen    4 KKPTINFIGFNQD------STLLSVGSKDG-YKIFSCSPFEKCFSK-----DTEGVSIVEMLFSS--SLVAIVSIKQPRK   69 (391)
T ss_pred             CCcceeeeeeccc------eeEEEccCCCc-eeEEecCchHHhhcc-----cCCCeEEEEeeccc--ceeEEEecCCCce
Confidence            3456677777765      34566666665 457776554321110     11122344445554  3555555443  4


Q ss_pred             EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCE
Q 018675           98 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV  177 (352)
Q Consensus        98 i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  177 (352)
                      +++++.......|-..   ....|-+|.++.  ++|+.+-.+. |.|||+...+....+.....+...+..++.++.+.+
T Consensus        70 Lkv~~~Kk~~~ICe~~---fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y  143 (391)
T KOG2110|consen   70 LKVVHFKKKTTICEIF---FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY  143 (391)
T ss_pred             EEEEEcccCceEEEEe---cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCce
Confidence            7777655443333222   346788888876  4666676655 999999765443333333345555666666666667


Q ss_pred             EEE-Ee-CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCc-EEEEcCCccccccCCCC
Q 018675          178 LFS-CS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT-IKIWGADITRMQSGDGY  254 (352)
Q Consensus       178 l~s-~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~  254 (352)
                      ++- ++ ..|.|.+||..+.     +....+.    +|.+++.+|+|+++|.+|||+++.|+ ||||.+...        
T Consensus       144 lAyp~s~t~GdV~l~d~~nl-----~~v~~I~----aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G--------  206 (391)
T KOG2110|consen  144 LAYPGSTTSGDVVLFDTINL-----QPVNTIN----AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG--------  206 (391)
T ss_pred             EEecCCCCCceEEEEEcccc-----eeeeEEE----ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc--------
Confidence            663 22 3578999976543     2233332    79999999999999999999999986 677754210        


Q ss_pred             ccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceE
Q 018675          255 ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLL  334 (352)
Q Consensus       255 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l  334 (352)
                                    +                      +++..              ..-..  -..|.+++|+|+++ +|
T Consensus       207 --------------~----------------------kl~eF--------------RRG~~--~~~IySL~Fs~ds~-~L  233 (391)
T KOG2110|consen  207 --------------Q----------------------KLYEF--------------RRGTY--PVSIYSLSFSPDSQ-FL  233 (391)
T ss_pred             --------------c----------------------Eeeee--------------eCCce--eeEEEEEEECCCCC-eE
Confidence                          0                      11100              00000  23589999999986 78


Q ss_pred             EEecCCCeEEEEeecc
Q 018675          335 ASASDDGMIKIWELAN  350 (352)
Q Consensus       335 ~s~~~Dg~i~iw~~~~  350 (352)
                      +..|..++|+||++++
T Consensus       234 ~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  234 AASSNTETVHIFKLEK  249 (391)
T ss_pred             EEecCCCeEEEEEecc
Confidence            8888899999999875

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.45  E-value=3.8e-13  Score=115.28  Aligned_cols=221  Identities=15%  Similarity=0.208  Sum_probs=155.2

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccc
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE  118 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~  118 (352)
                      |.+++-++.-|.|..+|+.+..-.  +.    ..-...|.++.|-.+.+++|++ ..+.+.|||-.+.+..|   ++. .
T Consensus       141 GrhlllgGrKGHlAa~Dw~t~~L~--~E----i~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHC---lk~-~  209 (545)
T KOG1272|consen  141 GRHLLLGGRKGHLAAFDWVTKKLH--FE----INVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHC---LKR-H  209 (545)
T ss_pred             ccEEEecCCccceeeeecccceee--ee----eehhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEee---hhh-c
Confidence            678999999999999998765321  11    1123578888998888888765 56678888865544333   333 3


Q ss_pred             CCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 018675          119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD  198 (352)
Q Consensus       119 ~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~  198 (352)
                      ..|..+.|-|-.-+|++++..|.++.-|+..++.   +..+..-...+..+.-.|-...+-+|...|+|.+|.....   
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl---Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk---  283 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL---VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK---  283 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhh---hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc---
Confidence            5789999999988999999999999999876653   3333334455666677787778889999999999943322   


Q ss_pred             CceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC
Q 018675          199 NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR  278 (352)
Q Consensus       199 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  278 (352)
                            ........|.++|.+|++.++|.|+||.|.|..++|||++....           ..+...  .-....+++++
T Consensus       284 ------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-----------l~t~~t--p~~a~~ls~Sq  344 (545)
T KOG1272|consen  284 ------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-----------LHTYRT--PHPASNLSLSQ  344 (545)
T ss_pred             ------chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc-----------cceeec--CCCcccccccc
Confidence                  11122236899999999999999999999999999999875321           111111  11234456677


Q ss_pred             CceEEecCCCCeEEEEEc
Q 018675          279 EGIIASGAADDSVQFFVE  296 (352)
Q Consensus       279 ~~~~~s~~~d~~v~~~~~  296 (352)
                      .+++|.+ ....+.+|..
T Consensus       345 kglLA~~-~G~~v~iw~d  361 (545)
T KOG1272|consen  345 KGLLALS-YGDHVQIWKD  361 (545)
T ss_pred             ccceeee-cCCeeeeehh
Confidence            7766654 4456778843

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=1.1e-10  Score=97.51  Aligned_cols=205  Identities=21%  Similarity=0.299  Sum_probs=127.9

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeee--------eeeeeecceecceEEEEECCCCCEEEEE
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWN--------CKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~--------~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      ...|+|++|.|..     ...|+.|... -|.+|..+.......        ..+.++.-...+|++++|.+||..++++
T Consensus       140 QrnvtclawRPls-----aselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tA  213 (445)
T KOG2139|consen  140 QRNVTCLAWRPLS-----ASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTA  213 (445)
T ss_pred             hcceeEEEeccCC-----cceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeec
Confidence            4589999999974     3566666554 577897654321111        0111222123689999999999999999


Q ss_pred             eC-CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           93 SF-DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        93 ~~-d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      +. |..|.|||..++...++.-  .--+.+.-+.|+|++..|+++.-|+..++|........+.   .......|....|
T Consensus       214 S~gsssi~iWdpdtg~~~pL~~--~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er---w~lgsgrvqtacW  288 (445)
T KOG2139|consen  214 SFGSSSIMIWDPDTGQKIPLIP--KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER---WILGSGRVQTACW  288 (445)
T ss_pred             ccCcceEEEEcCCCCCcccccc--cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc---eeccCCceeeeee
Confidence            86 5689999988776544432  2346788999999999999999999999997543322221   1122347899999


Q ss_pred             cCCCCEEE-EEeCCCcEEEEecCCCCCCC-----ceeE---eeeecc--C---CCCcccEEEEEEcCCCCEEEEEeCCC
Q 018675          172 HPTMDVLF-SCSYDNTIKVWWAEDTDSDN-----WHCV---QTISES--N---NGHSSTIWALSFNAKGDKLVSCSDDL  236 (352)
Q Consensus       172 ~~~~~~l~-s~~~d~~i~iw~~~~~~~~~-----~~~~---~~~~~~--~---~~h~~~i~~l~~~~~~~~l~s~~~dg  236 (352)
                      +|.|.+|+ +.+....+.-..+...+...     .+..   ..+.+.  .   .-..+++.+++|+|.|.+||+.-..+
T Consensus       289 spcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  289 SPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             cCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence            99998754 44433333222221111100     0011   111100  0   01245788999999999999876543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.45  E-value=1.2e-09  Score=90.00  Aligned_cols=238  Identities=14%  Similarity=0.235  Sum_probs=140.7

Q ss_pred             EEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE-EEeCC------Cc
Q 018675           25 WSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA-TASFD------AT   97 (352)
Q Consensus        25 ~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~d------~~   97 (352)
                      .+++|+-+.      ..|+ ++.|.-.|+|+.+.-++..     .+..+...+.-+..---.++|| .|+..      ++
T Consensus         9 lsvs~NQD~------ScFa-va~~~Gfriyn~~P~ke~~-----~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNk   76 (346)
T KOG2111|consen    9 LSVSFNQDH------SCFA-VATDTGFRIYNCDPFKESA-----SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNK   76 (346)
T ss_pred             eEEEEccCC------ceEE-EEecCceEEEecCchhhhh-----hhccccCchhhhhHhhhhceEEEecCCCCCCCCCce
Confidence            348888764      2444 4567778999886532110     0011111110000000123333 34433      47


Q ss_pred             EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe-eEEEEEeecCccCeeEEEEcCCCC
Q 018675           98 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPTMD  176 (352)
Q Consensus        98 i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~  176 (352)
                      +.|||+...  .++.++. ...+|.+|.+.++  +++..- .+.|.||....... ..++.+ .......+++.-+....
T Consensus        77 viIWDD~k~--~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et-~~NPkGlC~~~~~~~k~  149 (346)
T KOG2111|consen   77 VIIWDDLKE--RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIET-RSNPKGLCSLCPTSNKS  149 (346)
T ss_pred             EEEEecccC--cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeec-ccCCCceEeecCCCCce
Confidence            899996544  4555554 5789999999875  555554 46799998753322 222222 22233444433222333


Q ss_pred             EEE-EEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCc-EEEEcCCccccccCCCC
Q 018675          177 VLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT-IKIWGADITRMQSGDGY  254 (352)
Q Consensus       177 ~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~  254 (352)
                      .|+ .|-.-|.|.|-++.....+.   ..    ...+|.+.|.+++.+.+|..+||++..|+ |||||........    
T Consensus       150 ~LafPg~k~GqvQi~dL~~~~~~~---p~----~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~----  218 (346)
T KOG2111|consen  150 LLAFPGFKTGQVQIVDLASTKPNA---PS----IINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ----  218 (346)
T ss_pred             EEEcCCCccceEEEEEhhhcCcCC---ce----EEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee----
Confidence            333 45567899998876654321   11    22489999999999999999999999996 8999875432110    


Q ss_pred             ccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccC
Q 018675          255 ASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK  298 (352)
Q Consensus       255 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~  298 (352)
                          +  ---+.....+++++++++. .++++|..|++.++....
T Consensus       219 ----E--~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  219 ----E--LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             ----e--eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence                0  0113345679999999986 677788889999996544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.44  E-value=3.3e-11  Score=97.18  Aligned_cols=111  Identities=23%  Similarity=0.506  Sum_probs=83.0

Q ss_pred             eecceEEEEECCCCCEEEE--EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCC---CcEEEEec
Q 018675           73 HTRTVRSCAWSPSGKLLAT--ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KSVWIWEV  147 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s--~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~v~vwd~  147 (352)
                      ..++|.+++|+|+|+.+|+  |..++.+.+||...   ..+..+.  ...++.+.|+|+|++|++++.+   |.|.+||+
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~  132 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDV  132 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            3457999999999998654  44677999998752   3344443  4678899999999999998754   56999998


Q ss_pred             CCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC------CCcEEEEecC
Q 018675          148 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY------DNTIKVWWAE  193 (352)
Q Consensus       148 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------d~~i~iw~~~  193 (352)
                      ...   +.+...  +...++.++|+|+++++++++.      |+.++||+..
T Consensus       133 ~~~---~~i~~~--~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  133 RKK---KKISTF--EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             CCC---EEeecc--ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            643   333333  2335789999999999998864      6788888654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.42  E-value=3.4e-12  Score=111.38  Aligned_cols=169  Identities=17%  Similarity=0.276  Sum_probs=110.7

Q ss_pred             EEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC-CEEEEEeCCCcEEEEEccC--------------C
Q 018675           42 FASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG-KLLATASFDATTCIWEDVG--------------G  106 (352)
Q Consensus        42 l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~i~~~~~--------------~  106 (352)
                      ++.+-.-|.|.+.+..... +.+.-..-....+..|+++.|-|.+ ..++.+-.+|.+.+||...              +
T Consensus       188 llIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~  266 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG  266 (636)
T ss_pred             eEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence            4555566777777654321 1110000011234789999999855 4455566789998886321              0


Q ss_pred             ce------------eeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC
Q 018675          107 DY------------ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT  174 (352)
Q Consensus       107 ~~------------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (352)
                      +.            .++..+.--.+.|+.++|+|||.+||+.+.||.++|+|.....   .+...+.--....|++|+||
T Consensus       267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e---Llg~mkSYFGGLLCvcWSPD  343 (636)
T KOG2394|consen  267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE---LLGVMKSYFGGLLCVCWSPD  343 (636)
T ss_pred             CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH---HHHHHHhhccceEEEEEcCC
Confidence            00            0111122224578899999999999999999999999975432   22223333457899999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc
Q 018675          175 MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN  223 (352)
Q Consensus       175 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~  223 (352)
                      ++++++|++|..|.+|.+.+..         ....-.||.++|..|+|+
T Consensus       344 GKyIvtGGEDDLVtVwSf~erR---------VVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  344 GKYIVTGGEDDLVTVWSFEERR---------VVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             ccEEEecCCcceEEEEEeccce---------EEEeccccccceeeEeec
Confidence            9999999999999999765431         112234789999999988

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=4.5e-10  Score=102.42  Aligned_cols=234  Identities=16%  Similarity=0.208  Sum_probs=135.3

Q ss_pred             eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC---CCcEEEEEccCCceeeeEeeccccCCeeEEEE
Q 018675           50 TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF---DATTCIWEDVGGDYECVATLEGHENEVKSVSW  126 (352)
Q Consensus        50 ~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~  126 (352)
                      .|.+||.+....    ...  ..+...+.+.+|+|||+.|+..+.   +..+.+|+..+++...+....   +.+..+.|
T Consensus       180 ~l~~~d~dg~~~----~~l--t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~---~~~~~~~~  250 (429)
T PRK03629        180 ELRVSDYDGYNQ----FVV--HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPAF  250 (429)
T ss_pred             eEEEEcCCCCCC----EEe--ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC---CCcCCeEE
Confidence            577777654321    111  124567889999999999887653   346888887766544443333   34556899


Q ss_pred             CCCCcEEEEe-eCCC--cEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCC-CcEEEEecCCCCCCCcee
Q 018675          127 NASGTLLATC-GRDK--SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDNWHC  202 (352)
Q Consensus       127 ~~~~~~l~s~-~~d~--~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~  202 (352)
                      +|+|+.|+.. +.++  .|.+||+..+..    ..+..+...+....|+|+++.++..+.+ +...+|.+.... ..   
T Consensus       251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~----~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~-g~---  322 (429)
T PRK03629        251 SPDGSKLAFALSKTGSLNLYVMDLASGQI----RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING-GA---  322 (429)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCE----EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC-CC---
Confidence            9999987754 4444  588889865432    2223334456788999999988766653 455666432111 11   


Q ss_pred             EeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC-C--cEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCC
Q 018675          203 VQTISESNNGHSSTIWALSFNAKGDKLVSCSDD-L--TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE  279 (352)
Q Consensus       203 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  279 (352)
                      ...+.    ..........|+|+|++|+..+.+ +  .|.+||++....         +.   +...  .......|+|+
T Consensus       323 ~~~lt----~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~---------~~---Lt~~--~~~~~p~~SpD  384 (429)
T PRK03629        323 PQRIT----WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------QV---LTDT--FLDETPSIAPN  384 (429)
T ss_pred             eEEee----cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe---------EE---eCCC--CCCCCceECCC
Confidence            11221    112234567899999998876543 3  467777643211         11   1110  11224567887


Q ss_pred             c-eEEecCCCCe---EEEEEccCCccccCcccceeeecccccCcceeEEEecC
Q 018675          280 G-IIASGAADDS---VQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP  328 (352)
Q Consensus       280 ~-~~~s~~~d~~---v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  328 (352)
                      + +++..+.++.   +.++....          .......+|.+.+...+|+|
T Consensus       385 G~~i~~~s~~~~~~~l~~~~~~G----------~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        385 GTMVIYSSSQGMGSVLNLVSTDG----------RFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCEEEEEEcCCCceEEEEEECCC----------CCeEECccCCCCcCCcccCC
Confidence            7 4555555543   33333221          11223446778889999987

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.41  E-value=1.4e-11  Score=115.40  Aligned_cols=190  Identities=18%  Similarity=0.281  Sum_probs=141.2

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccc
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE  118 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~  118 (352)
                      .++++....++.+-+|+......+.+..... .---....-+.++++.-++++|+.-+.+.+|+... +..+. .+.+|.
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e-r~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~-dn~p~-~l~GHe  175 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDE-RCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE-DNKPI-RLKGHE  175 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCc-eEEEEeEEEEeccCcEEEEEeccccccEEEEeccc-cCCcc-eecccC
Confidence            3677888888899999876543322111100 00011223345677888899999999999998763 22233 578999


Q ss_pred             CCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 018675          119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD  198 (352)
Q Consensus       119 ~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~  198 (352)
                      +.+.++.|+.+|.+++++|+|+++++|++...+...  ....+|+..++.+.++|.  .++++++|-+.++|......  
T Consensus       176 G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--  249 (967)
T KOG0974|consen  176 GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--  249 (967)
T ss_pred             CceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--eeEEeccceEEEEEecccce--
Confidence            999999999999999999999999999997655332  356789999999999998  89999999999999554321  


Q ss_pred             CceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          199 NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       199 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                             ++.........|+.+...++....+|++.|+.+++|++.
T Consensus       250 -------l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  250 -------LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             -------ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence                   111111224579999999999999999999999999864

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=8.4e-11  Score=99.07  Aligned_cols=194  Identities=9%  Similarity=0.141  Sum_probs=137.7

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC-CEEEEEeCC--CcEEEEEccCCceeeeEeecc
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG-KLLATASFD--ATTCIWEDVGGDYECVATLEG  116 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d--~~i~i~~~~~~~~~~~~~~~~  116 (352)
                      ..|++|-.+|.+++|....+......  ..+..-...+..+.-++.. .++|+|+..  ..+.+||..+..  .+..-+.
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~hss~--l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--qiw~aKN  191 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLHSSK--LIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--QIWSAKN  191 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCcccccc--ceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccce--eeeeccC
Confidence            46899999999999987644211111  1111112455666666644 456679988  889999987652  2221111


Q ss_pred             c---------cCCeeEEEECCC--CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCC
Q 018675          117 H---------ENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN  185 (352)
Q Consensus       117 h---------~~~v~~v~~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~  185 (352)
                      -         .-.++++.|-+.  ...|+++..-+.+++||.+.++  .++..+.--..+++++...|.++++++|..-+
T Consensus       192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g  269 (412)
T KOG3881|consen  192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKG  269 (412)
T ss_pred             CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccc
Confidence            0         012457788776  7789999999999999987554  34555555567899999999999999999999


Q ss_pred             cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccc
Q 018675          186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR  247 (352)
Q Consensus       186 ~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  247 (352)
                      .+..+|.+...        .+.-...+..+.|.+|..+|.++++++||-|..|||+|++..+
T Consensus       270 ~l~~FD~r~~k--------l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  270 QLAKFDLRGGK--------LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             hhheecccCce--------eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence            99999876532        1112234677899999999999999999999999999987543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.38  E-value=5.1e-08  Score=86.48  Aligned_cols=283  Identities=14%  Similarity=0.200  Sum_probs=166.7

Q ss_pred             CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC----CCcEEEEEccC--CceeeeEeeccccCCee
Q 018675           49 KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF----DATTCIWEDVG--GDYECVATLEGHENEVK  122 (352)
Q Consensus        49 ~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----d~~i~i~~~~~--~~~~~~~~~~~h~~~v~  122 (352)
                      +.|.+|+++.....+.......  -.....-++++|++++|-+...    ++.|..|....  +....+...........
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~   90 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC   90 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred             CcEEEEEEcCCCCCceEeeeec--CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence            6888887743332222222211  1234466889999999888776    46888887654  45555554443345567


Q ss_pred             EEEECCCCcEEEEee-CCCcEEEEecCCCCeeEEE-EEee--c--------CccCeeEEEEcCCCCEEEEEeC-CCcEEE
Q 018675          123 SVSWNASGTLLATCG-RDKSVWIWEVMPGNEFECV-SVLQ--G--------HAQDVKMVQWHPTMDVLFSCSY-DNTIKV  189 (352)
Q Consensus       123 ~v~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~-~~~~--~--------h~~~v~~~~~~~~~~~l~s~~~-d~~i~i  189 (352)
                      .++++|++.+|+++. .++++.++++......... ....  +        ......++.++|+++++++... ...|.+
T Consensus        91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~  170 (345)
T PF10282_consen   91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV  170 (345)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence            899999999988887 4899999999764333222 1121  0        1133568899999998877643 457888


Q ss_pred             EecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE-EeCCCcEEEEcCCccccccCCCCccceeeEEeec---
Q 018675          190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS-CSDDLTIKIWGADITRMQSGDGYASWRHLCTISG---  265 (352)
Q Consensus       190 w~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---  265 (352)
                      |++..... .+.....+.   ...+.....+.|+|+++++.. .-.+++|.+++++...       ..+.....+..   
T Consensus       171 ~~~~~~~~-~l~~~~~~~---~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-------g~~~~~~~~~~~~~  239 (345)
T PF10282_consen  171 YDIDDDTG-KLTPVDSIK---VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-------GSLTEIQTISTLPE  239 (345)
T ss_dssp             EEE-TTS--TEEEEEEEE---CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-------TEEEEEEEEESCET
T ss_pred             EEEeCCCc-eEEEeeccc---cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-------CceeEEEEeeeccc
Confidence            87754321 121112221   123456788999999988754 4567889999765110       01112211111   


Q ss_pred             -cc-CcceEEEEecCCc--eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCC
Q 018675          266 -YH-DRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG  341 (352)
Q Consensus       266 -~~-~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg  341 (352)
                       .. ......+.+++++  .+++.-..+.|.+|......   + ... .+.........-..++++|++++++++...++
T Consensus       240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~---g-~l~-~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~  314 (345)
T PF10282_consen  240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT---G-TLT-LVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN  314 (345)
T ss_dssp             TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT---T-TEE-EEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred             cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC---C-ceE-EEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence             11 1246677888877  45566667788888763211   0 011 11112222334789999999999888888999


Q ss_pred             eEEEEeec
Q 018675          342 MIKIWELA  349 (352)
Q Consensus       342 ~i~iw~~~  349 (352)
                      .|.+|++.
T Consensus       315 ~v~vf~~d  322 (345)
T PF10282_consen  315 TVSVFDID  322 (345)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999884

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.36  E-value=5e-10  Score=106.90  Aligned_cols=261  Identities=17%  Similarity=0.205  Sum_probs=152.0

Q ss_pred             ceecceEEEEECCC-CCEEEEEeCCCcEEEEEccC-----CceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEE
Q 018675           72 MHTRTVRSCAWSPS-GKLLATASFDATTCIWEDVG-----GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIW  145 (352)
Q Consensus        72 ~h~~~v~~~~~s~~-~~~l~s~~~d~~i~i~~~~~-----~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vw  145 (352)
                      .|...|..++.++. +.++++|+.||+|++|+...     +......+.......+.++...+.++.+|.++.||.|.+.
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence            46777888887765 49999999999999998642     2233344444346789999999999999999999999999


Q ss_pred             ecCCCC--eeE--EEEEeecCcc-CeeEE-EEcC-CCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccE
Q 018675          146 EVMPGN--EFE--CVSVLQGHAQ-DVKMV-QWHP-TMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI  217 (352)
Q Consensus       146 d~~~~~--~~~--~~~~~~~h~~-~v~~~-~~~~-~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i  217 (352)
                      ++....  ...  +......+.. .+.++ ++.. ... .++.+..-+.|..||.+.. .+-|    ++... ..| +.|
T Consensus      1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~-~~~w----~lk~~-~~h-G~v 1198 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR-HDAW----RLKNQ-LRH-GLV 1198 (1431)
T ss_pred             EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh-hhHH----hhhcC-ccc-cce
Confidence            985421  111  1112222222 22222 2221 233 6777778889999986542 1112    22111 123 579


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC--C--ce-EEecC-CCCeE
Q 018675          218 WALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--E--GI-IASGA-ADDSV  291 (352)
Q Consensus       218 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~~-~~s~~-~d~~v  291 (352)
                      ++++.+|-+..++.|+..|.+.+||++.....     ..|...      +...+..+...+  .  .. +.+++ ..+.+
T Consensus      1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i-----~sw~~P------~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI-----LSWEHP------ARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred             eEEEecCCceEEEEecCCceEEEEEeecCcee-----ecccCc------ccCCcceEEeeccCCCCceEEEecccCCCce
Confidence            99999999999999999999999998743221     223211      122233333222  2  23 33333 46667


Q ss_pred             EEEEccCCccc----cC-ccc----ceeee-cccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          292 QFFVESKDDLI----DG-PSY----KMLLK-KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       292 ~~~~~~~~~~~----~~-~~~----~~~~~-~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      -+|....+...    .. ...    ..... ....+.-......+. ++..++.|||.|..||.||..++
T Consensus      1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC-EKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc-cCCceeeecCCccceeeccCCCc
Confidence            77754432110    00 000    00000 000222222333333 23347789999999999998764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=1.3e-10  Score=96.47  Aligned_cols=267  Identities=15%  Similarity=0.256  Sum_probs=158.9

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCce-eeeeeeeeec-----------ceecceEEEEECCCC-
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSR-FWNCKAVLEE-----------MHTRTVRSCAWSPSG-   86 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~-~~~~~~~~~~-----------~h~~~v~~~~~s~~~-   86 (352)
                      -.+-|.+|.|...      |.+||||..+|.|-++.-..... .+.....+..           .-...|+.+.|.+++ 
T Consensus        24 eadiis~vef~~~------Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n   97 (433)
T KOG1354|consen   24 EADIISAVEFDHY------GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN   97 (433)
T ss_pred             hhcceeeEEeecc------cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence            4567889999876      68999999999999996543221 1111111100           113467888998765 


Q ss_pred             -CEEEEEeCCCcEEEEEccCCcee---------------------------------eeEe-eccccCCeeEEEECCCCc
Q 018675           87 -KLLATASFDATTCIWEDVGGDYE---------------------------------CVAT-LEGHENEVKSVSWNASGT  131 (352)
Q Consensus        87 -~~l~s~~~d~~i~i~~~~~~~~~---------------------------------~~~~-~~~h~~~v~~v~~~~~~~  131 (352)
                       ..++....|.+|++|........                                 +... -.+|+-.|++++++.|++
T Consensus        98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E  177 (433)
T KOG1354|consen   98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE  177 (433)
T ss_pred             ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence             35677789999999975321110                                 0011 135788899999999999


Q ss_pred             EEEEeeCCCcEEEEecCCCCeeEEEEEeecCc-----cCeeEEEEcCCCC-EEEEEeCCCcEEEEecCCCCCCC-ceeEe
Q 018675          132 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHA-----QDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDN-WHCVQ  204 (352)
Q Consensus       132 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~-~~~~~  204 (352)
                      .++++ +|-.|.+|.+......-.+-.++.+.     .-|++..|||... .++-.+..|+|++.|++....-. ...+-
T Consensus       178 t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  178 TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence            88865 56789999975433222222233322     2367888999765 45666778999999987421100 00000


Q ss_pred             eeeccC------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccc--cCCCCccc-eeeEEeecccCcce---E
Q 018675          205 TISESN------NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ--SGDGYASW-RHLCTISGYHDRTI---F  272 (352)
Q Consensus       205 ~~~~~~------~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~i---~  272 (352)
                      ...+..      ..-...|..+.|+++|+|+++-. =-+|++||+++....  ...-+... ..++.+  +....|   +
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~l--YEnD~IfdKF  333 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSL--YENDAIFDKF  333 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHH--hhccchhhee
Confidence            000000      01134677899999999998754 268999998653210  00000000 001111  112222   3


Q ss_pred             EEEecCC-ceEEecCCCCeEEEEEc
Q 018675          273 SVHWSRE-GIIASGAADDSVQFFVE  296 (352)
Q Consensus       273 ~~~~~~~-~~~~s~~~d~~v~~~~~  296 (352)
                      .++|+.+ .++++|+..+..+++..
T Consensus       334 ec~~sg~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  334 ECSWSGNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             EEEEcCCcceEecccccceEEEecC
Confidence            4667765 48999999999999973

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=1.8e-09  Score=98.42  Aligned_cols=197  Identities=15%  Similarity=0.166  Sum_probs=120.2

Q ss_pred             cCCccceEEEEEccCCCCCCCccEEEEee---CCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE-e
Q 018675           18 EGHTDRVWSLAWKPTAGVDGVAPVFASCS---GDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA-S   93 (352)
Q Consensus        18 ~gH~~~V~~i~~~p~~~~~~~~~~l~s~s---~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~   93 (352)
                      ..+.+.+.+..|+|+      ++.|+..+   .+..+.+|++.+++.    ....  ...+.+....|+|||+.|+.. +
T Consensus       195 t~~~~~~~~p~wSPD------G~~la~~s~~~g~~~i~i~dl~~G~~----~~l~--~~~~~~~~~~~SPDG~~La~~~~  262 (429)
T PRK03629        195 HRSPQPLMSPAWSPD------GSKLAYVTFESGRSALVIQTLANGAV----RQVA--SFPRHNGAPAFSPDGSKLAFALS  262 (429)
T ss_pred             ecCCCceeeeEEcCC------CCEEEEEEecCCCcEEEEEECCCCCe----EEcc--CCCCCcCCeEECCCCCEEEEEEc
Confidence            345567889999997      45666544   345788888876532    1111  122334568999999988754 4


Q ss_pred             CCC--cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCC-CcEEEE--ecCCCCeeEEEEEeecCccCeeE
Q 018675           94 FDA--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-KSVWIW--EVMPGNEFECVSVLQGHAQDVKM  168 (352)
Q Consensus        94 ~d~--~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-~~v~vw--d~~~~~~~~~~~~~~~h~~~v~~  168 (352)
                      .++  .|.+||..+++..   .+..+...+....|+|+|+.|+..+.+ +...+|  ++..+.. .   .+..+......
T Consensus       263 ~~g~~~I~~~d~~tg~~~---~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~---~lt~~~~~~~~  335 (429)
T PRK03629        263 KTGSLNLYVMDLASGQIR---QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-Q---RITWEGSQNQD  335 (429)
T ss_pred             CCCCcEEEEEECCCCCEE---EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-E---EeecCCCCccC
Confidence            444  4777887666433   233344567889999999988776654 455555  4433321 1   12222334456


Q ss_pred             EEEcCCCCEEEEEeCC---CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCc---EEEEc
Q 018675          169 VQWHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT---IKIWG  242 (352)
Q Consensus       169 ~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~---i~iwd  242 (352)
                      ..|+|+++.++..+.+   ..|.+|++....   .   ..+..   .+  ...+..|+|||++|+..+.++.   +.+++
T Consensus       336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~---~---~~Lt~---~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~  404 (429)
T PRK03629        336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---V---QVLTD---TF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVS  404 (429)
T ss_pred             EEECCCCCEEEEEEccCCCceEEEEECCCCC---e---EEeCC---CC--CCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence            8899999988776543   246777764332   1   12211   11  1235679999999998887764   55555


Q ss_pred             CC
Q 018675          243 AD  244 (352)
Q Consensus       243 ~~  244 (352)
                      ++
T Consensus       405 ~~  406 (429)
T PRK03629        405 TD  406 (429)
T ss_pred             CC
Confidence            43

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.33  E-value=3.1e-10  Score=93.76  Aligned_cols=274  Identities=15%  Similarity=0.329  Sum_probs=162.2

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCC-c
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDA-T   97 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~-~   97 (352)
                      .-...+.+++|+|+.     ...|.+..-|-.+.+|.+.+.+...     + ..-+..+..++|+|||++.+..+.-. .
T Consensus        89 eg~agls~~~WSPdg-----rhiL~tseF~lriTVWSL~t~~~~~-----~-~~pK~~~kg~~f~~dg~f~ai~sRrDCk  157 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDG-----RHILLTSEFDLRITVWSLNTQKGYL-----L-PHPKTNVKGYAFHPDGQFCAILSRRDCK  157 (447)
T ss_pred             cCCCcceeeeECCCc-----ceEeeeecceeEEEEEEeccceeEE-----e-cccccCceeEEECCCCceeeeeecccHH
Confidence            345678899999984     3678888889999999987754321     1 11224568889999999988776321 0


Q ss_pred             --EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCC
Q 018675           98 --TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM  175 (352)
Q Consensus        98 --i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  175 (352)
                        +.|..  -..+.....++--+-..+.+.|+|+|+.|+         |||-.-.  ++.. .+. -...+..+.|+|.+
T Consensus       158 dyv~i~~--c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Le--ykv~-aYe-~~lG~k~v~wsP~~  222 (447)
T KOG4497|consen  158 DYVQISS--CKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLE--YKVY-AYE-RGLGLKFVEWSPCN  222 (447)
T ss_pred             HHHHHHh--hHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhh--heee-eee-eccceeEEEecccc
Confidence              11110  011112222222334567899999998765         6774211  1111 111 12468899999999


Q ss_pred             CEEEEEeCCCcEEEEecCC-----C--------CCC--------------CceeE-------------------------
Q 018675          176 DVLFSCSYDNTIKVWWAED-----T--------DSD--------------NWHCV-------------------------  203 (352)
Q Consensus       176 ~~l~s~~~d~~i~iw~~~~-----~--------~~~--------------~~~~~-------------------------  203 (352)
                      ++++.|+.|+.+++.+--.     .        +..              ...++                         
T Consensus       223 qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~p  302 (447)
T KOG4497|consen  223 QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTP  302 (447)
T ss_pred             ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcc
Confidence            9999999999888752100     0        000              00000                         


Q ss_pred             ---eeeec--cCCCCcccEEEEEEcCCCCEEEEEeCC--CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEe
Q 018675          204 ---QTISE--SNNGHSSTIWALSFNAKGDKLVSCSDD--LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW  276 (352)
Q Consensus       204 ---~~~~~--~~~~h~~~i~~l~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  276 (352)
                         +.+..  ....-...+--++|++|..|+++-.+.  +.+-+||++..+.....             .....|..+.|
T Consensus       303 v~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-------------iQk~piraf~W  369 (447)
T KOG4497|consen  303 VKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-------------IQKHPIRAFEW  369 (447)
T ss_pred             eeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-------------hhccceeEEEe
Confidence               00000  000012345568999999999887643  57889988654432110             01235788899


Q ss_pred             cCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCe
Q 018675          277 SREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGM  342 (352)
Q Consensus       277 ~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~  342 (352)
                      +|.. .++.+.....+++|..+.         ...+... +-.-.|..+.|+-+|.. ++-.++|..
T Consensus       370 dP~~prL~vctg~srLY~W~psg---------~~~V~vP-~~GF~i~~l~W~~~g~~-i~l~~kDaf  425 (447)
T KOG4497|consen  370 DPGRPRLVVCTGKSRLYFWAPSG---------PRVVGVP-KKGFNIQKLQWLQPGEF-IVLCGKDAF  425 (447)
T ss_pred             CCCCceEEEEcCCceEEEEcCCC---------ceEEecC-CCCceeeeEEecCCCcE-EEEEcCCce
Confidence            9875 566665566688886653         1222221 22367999999988874 667888753

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.33  E-value=1.3e-10  Score=95.91  Aligned_cols=190  Identities=17%  Similarity=0.316  Sum_probs=119.5

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCE-EEEEeCCCcEE
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKL-LATASFDATTC   99 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~i~   99 (352)
                      -+.|.-+.|..+.     .-.+-....|+.|.+|++...+  |.++-   ......+.++.|||||+. |.+...|-.|.
T Consensus        48 ldki~yieW~ads-----~~ilC~~yk~~~vqvwsl~Qpe--w~ckI---deg~agls~~~WSPdgrhiL~tseF~lriT  117 (447)
T KOG4497|consen   48 LDKIVYIEWKADS-----CHILCVAYKDPKVQVWSLVQPE--WYCKI---DEGQAGLSSISWSPDGRHILLTSEFDLRIT  117 (447)
T ss_pred             HHHhhheeeeccc-----eeeeeeeeccceEEEEEeecce--eEEEe---ccCCCcceeeeECCCcceEeeeecceeEEE
Confidence            3677778888764     2344555788999999987553  33321   223567899999999965 55677899999


Q ss_pred             EEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE
Q 018675          100 IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF  179 (352)
Q Consensus       100 i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  179 (352)
                      +|...+.....+   +--...+..++|+|+|++.+-+++........+...+....+..+.-.+...+.+.|+|++..++
T Consensus       118 VWSL~t~~~~~~---~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la  194 (447)
T KOG4497|consen  118 VWSLNTQKGYLL---PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA  194 (447)
T ss_pred             EEEeccceeEEe---cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE
Confidence            998776532222   21223568899999999877776532111222211111222223334455678889999988765


Q ss_pred             EEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEc
Q 018675          180 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG  242 (352)
Q Consensus       180 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd  242 (352)
                      +         ||.--.     ..+...     ..+-.+..++|+|.+++|+.|+.|+.+|+-+
T Consensus       195 V---------wd~~Le-----ykv~aY-----e~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  195 V---------WDNVLE-----YKVYAY-----ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             E---------ecchhh-----heeeee-----eeccceeEEEeccccceEEeeccchhhhhhc
Confidence            4         431100     000001     1124578899999999999999999998854

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=9.2e-10  Score=100.42  Aligned_cols=160  Identities=18%  Similarity=0.210  Sum_probs=101.6

Q ss_pred             eecceEEEEECCCCCEEEEEeCC---CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEE-EeeCCCcEEEEecC
Q 018675           73 HTRTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIWEVM  148 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d---~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~vwd~~  148 (352)
                      +...+.+.+|+|||+.|+..+.+   ..|.+||..+++...+.   ...+.+.+..|+|+|+.|+ +.+.++...+|.+.
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            55678899999999999887753   35888888776543332   2334566889999998776 56778877777653


Q ss_pred             CCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC
Q 018675          149 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD  227 (352)
Q Consensus       149 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~  227 (352)
                      ....  ....+..+........|+|+++.++..+. ++...+|.+.... ...   ..+..    .........|+|+|+
T Consensus       271 ~~~~--~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~-g~~---~~lt~----~g~~~~~~~~SpDG~  340 (427)
T PRK02889        271 ADGS--GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG-GAA---QRVTF----TGSYNTSPRISPDGK  340 (427)
T ss_pred             CCCC--CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC-Cce---EEEec----CCCCcCceEECCCCC
Confidence            2111  12233334444566789999998776554 4667777543211 111   11111    112233578999999


Q ss_pred             EEEEEeCCC---cEEEEcCCc
Q 018675          228 KLVSCSDDL---TIKIWGADI  245 (352)
Q Consensus       228 ~l~s~~~dg---~i~iwd~~~  245 (352)
                      +|+..+.++   .|.+||+..
T Consensus       341 ~Ia~~s~~~g~~~I~v~d~~~  361 (427)
T PRK02889        341 LLAYISRVGGAFKLYVQDLAT  361 (427)
T ss_pred             EEEEEEccCCcEEEEEEECCC
Confidence            998766554   588888753

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.32  E-value=7.7e-09  Score=85.25  Aligned_cols=179  Identities=16%  Similarity=0.231  Sum_probs=117.5

Q ss_pred             CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeec--cccCCeeEEEE
Q 018675           49 KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE--GHENEVKSVSW  126 (352)
Q Consensus        49 ~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~--~h~~~v~~v~~  126 (352)
                      ..|.|||-.....+      .+.....+|.++.+.++  .|++. ..+.|.+|...+. .+.+..+.  ......++++-
T Consensus        75 NkviIWDD~k~~~i------~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n-~k~l~~~et~~NPkGlC~~~~  144 (346)
T KOG2111|consen   75 NKVIIWDDLKERCI------IELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDN-PKLLHVIETRSNPKGLCSLCP  144 (346)
T ss_pred             ceEEEEecccCcEE------EEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCC-hhheeeeecccCCCceEeecC
Confidence            57999984332221      11224578999999875  34433 4678999975432 22233222  22234444432


Q ss_pred             CCCCcEEEE-eeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCc-EEEEecCCCCCCCceeEe
Q 018675          127 NASGTLLAT-CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT-IKVWWAEDTDSDNWHCVQ  204 (352)
Q Consensus       127 ~~~~~~l~s-~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~  204 (352)
                      ..+..+||. |-.-|.|.+-|+...... .-..+.+|...|.|++...+|..+|++|..|+ |+|||..+.     ..++
T Consensus       145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g-----~~l~  218 (346)
T KOG2111|consen  145 TSNKSLLAFPGFKTGQVQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG-----TLLQ  218 (346)
T ss_pred             CCCceEEEcCCCccceEEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC-----cEee
Confidence            223333332 345588999988543221 12456789999999999999999999999987 799976554     2344


Q ss_pred             eeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          205 TISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       205 ~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      ++...  .....|.+++|||+..+|+..++.|++.||.++.
T Consensus       219 E~RRG--~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  219 ELRRG--VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             eeecC--CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            44321  2346899999999999999999999999998764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=4.1e-09  Score=96.59  Aligned_cols=171  Identities=12%  Similarity=0.151  Sum_probs=107.1

Q ss_pred             eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC---CCcEEEEEccCCceeeeEeeccccCCeeEEEE
Q 018675           50 TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF---DATTCIWEDVGGDYECVATLEGHENEVKSVSW  126 (352)
Q Consensus        50 ~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~  126 (352)
                      .|.+||......    ...  ..|...+.+.+|+|||+.|+..+.   +..|.+|+..+++..   .+..+.+.+...+|
T Consensus       183 ~l~~~d~dg~~~----~~l--t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---~l~~~~g~~~~~~~  253 (435)
T PRK05137        183 RLAIMDQDGANV----RYL--TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---LVGNFPGMTFAPRF  253 (435)
T ss_pred             EEEEECCCCCCc----EEE--ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---EeecCCCcccCcEE
Confidence            566666644321    111  235678999999999999988764   357999998776543   23345567788999


Q ss_pred             CCCCcEEE-EeeCCCc--EEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-CC--cEEEEecCCCCCCCc
Q 018675          127 NASGTLLA-TCGRDKS--VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DN--TIKVWWAEDTDSDNW  200 (352)
Q Consensus       127 ~~~~~~l~-s~~~d~~--v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~i~iw~~~~~~~~~~  200 (352)
                      +|+|+.|+ +.+.++.  |.+||+..+.    ...+..+........|+|+++.++..+. ++  .|.+++.....    
T Consensus       254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----  325 (435)
T PRK05137        254 SPDGRKVVMSLSQGGNTDIYTMDLRSGT----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----  325 (435)
T ss_pred             CCCCCEEEEEEecCCCceEEEEECCCCc----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----
Confidence            99998765 5566665  6666775443    2233444445667899999998876663 33  46666543321    


Q ss_pred             eeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC-C--cEEEEcC
Q 018675          201 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD-L--TIKIWGA  243 (352)
Q Consensus       201 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d-g--~i~iwd~  243 (352)
                        .+.+..    +...+....|+|+|++|+....+ +  .|.+|++
T Consensus       326 --~~~lt~----~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~  365 (435)
T PRK05137        326 --PRRISF----GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP  365 (435)
T ss_pred             --eEEeec----CCCcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence              122211    12335567899999998876543 2  3455543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=1.8e-09  Score=98.89  Aligned_cols=190  Identities=12%  Similarity=0.139  Sum_probs=119.8

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEeeC---CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE-
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSG---DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA-   90 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~---D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-   90 (352)
                      ..+..|...+.+..|+|+      ++.|+..+.   +..|.+|++.++..    .. + ..+.+.+.+.+|+|||+.|+ 
T Consensus       195 ~~lt~~~~~v~~p~wSpD------G~~lay~s~~~g~~~i~~~dl~~g~~----~~-l-~~~~g~~~~~~~SPDG~~la~  262 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPN------RQEITYMSYANGRPRVYLLDLETGQR----EL-V-GNFPGMTFAPRFSPDGRKVVM  262 (435)
T ss_pred             EEEecCCCCeEeeEECCC------CCEEEEEEecCCCCEEEEEECCCCcE----EE-e-ecCCCcccCcEECCCCCEEEE
Confidence            345567889999999997      456666653   46899999876542    11 1 12345677889999998775 


Q ss_pred             EEeCCCc--EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-CC--cEEEEecCCCCeeEEEEEeecCccC
Q 018675           91 TASFDAT--TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DK--SVWIWEVMPGNEFECVSVLQGHAQD  165 (352)
Q Consensus        91 s~~~d~~--i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~h~~~  165 (352)
                      +.+.++.  |.+|+..++..   ..+..+........|+|+|+.|+..+. ++  .|.++|+..+.. ..   +..+...
T Consensus       263 ~~~~~g~~~Iy~~d~~~~~~---~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~---lt~~~~~  335 (435)
T PRK05137        263 SLSQGGNTDIYTMDLRSGTT---TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RR---ISFGGGR  335 (435)
T ss_pred             EEecCCCceEEEEECCCCce---EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EE---eecCCCc
Confidence            5555665  55556655543   334445556778999999998877663 33  577777654332 22   2222334


Q ss_pred             eeEEEEcCCCCEEEEEeCCC---cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC
Q 018675          166 VKMVQWHPTMDVLFSCSYDN---TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD  234 (352)
Q Consensus       166 v~~~~~~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~  234 (352)
                      +....|+|+++.++..+.++   .|.+|+.....      ...+.     ....+....|+|+|+.|+..+.
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~------~~~lt-----~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG------ERILT-----SGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc------eEecc-----CCCCCCCCeECCCCCEEEEEEc
Confidence            56678999999887765432   46667653221      11121     1123556889999998876544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.30  E-value=9e-12  Score=107.00  Aligned_cols=193  Identities=19%  Similarity=0.265  Sum_probs=134.0

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEE
Q 018675           77 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV  156 (352)
Q Consensus        77 v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  156 (352)
                      -+.+.++.+|++|+.|+.-|.+..+|..+....+  .+. -...|..+.|-.+.++|+.+.. +.+.|||- .+..   +
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~--Ei~-v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~-~GtE---l  203 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF--EIN-VMETVRDVTFLHNEQFFAVAQK-KYVYVYDN-NGTE---L  203 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeee--eee-hhhhhhhhhhhcchHHHHhhhh-ceEEEecC-CCcE---E
Confidence            3667889999999999999999999998875433  332 2457889999777677776654 66889995 3444   3


Q ss_pred             EEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCC
Q 018675          157 SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL  236 (352)
Q Consensus       157 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg  236 (352)
                      ++++.|. .+..+.|-|-.-+|++++..|.++.-|+.....     +..+    ..-...+..++-+|-+-.+-.|...|
T Consensus       204 HClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl-----Va~~----~t~~G~~~vm~qNP~NaVih~GhsnG  273 (545)
T KOG1272|consen  204 HCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL-----VASI----RTGAGRTDVMKQNPYNAVIHLGHSNG  273 (545)
T ss_pred             eehhhcC-chhhhcccchhheeeecccCCceEEEeechhhh-----hHHH----HccCCccchhhcCCccceEEEcCCCc
Confidence            4444443 688999999888899999999998876643211     1111    11123444455555555555566666


Q ss_pred             cEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccc
Q 018675          237 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA  316 (352)
Q Consensus       237 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~  316 (352)
                      +|.+|.-                                                     +.         .+.+.+...
T Consensus       274 tVSlWSP-----------------------------------------------------~s---------kePLvKiLc  291 (545)
T KOG1272|consen  274 TVSLWSP-----------------------------------------------------NS---------KEPLVKILC  291 (545)
T ss_pred             eEEecCC-----------------------------------------------------CC---------cchHHHHHh
Confidence            6666632                                                     21         122234457


Q ss_pred             cCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          317 HDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       317 h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      |.++|.++++.++|+ ++||+|.|..++|||+++
T Consensus       292 H~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  292 HRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRN  324 (545)
T ss_pred             cCCCcceEEECCCCc-EEeecccccceeEeeecc
Confidence            999999999999986 688999999999999975

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.30  E-value=2e-12  Score=118.18  Aligned_cols=159  Identities=23%  Similarity=0.396  Sum_probs=126.6

Q ss_pred             ceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC
Q 018675           72 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~  151 (352)
                      .|..+|+|+.|...|+++++|+.|..++||...+.  .+...+.||.+.|+.++.+....+++++|.|.-|++|.++.+.
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~  265 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA  265 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccch--hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence            47788999999999999999999999999986655  5788899999999999999888899999999999999997664


Q ss_pred             eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                         ++..+.+|+..|++++|+|-    .+.+.||++++||.... ...    ............-+.++.|...+.-++|
T Consensus       266 ---pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~-~~~----y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  266 ---PVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLE-PRI----YVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             ---hHHHHhccccceeeeccCcc----ccCCCCCceEecccccc-ccc----cCCCCCCcccccceeeeecccccccccc
Confidence               46778999999999999995    37788999999976521 000    0000001112345667788888888999


Q ss_pred             EeCCCcEEEEcCC
Q 018675          232 CSDDLTIKIWGAD  244 (352)
Q Consensus       232 ~~~dg~i~iwd~~  244 (352)
                      ++.|+.-..|.+.
T Consensus       334 gs~d~ea~n~e~~  346 (1113)
T KOG0644|consen  334 GSRDGEARNHEFE  346 (1113)
T ss_pred             ccCCcccccchhh
Confidence            9999988888543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=2.1e-09  Score=98.41  Aligned_cols=173  Identities=18%  Similarity=0.249  Sum_probs=107.6

Q ss_pred             CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC---CcEEEEEccCCceeeeEeeccccCCeeEEE
Q 018675           49 KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVS  125 (352)
Q Consensus        49 ~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~  125 (352)
                      .+|.+||......    ...  ..+...+.+.+|+|||+.|+..+.+   ..+.+|+..+++...+.   .+.+...+..
T Consensus       184 ~~l~i~D~~g~~~----~~l--t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~  254 (433)
T PRK04922        184 YALQVADSDGYNP----QTI--LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPS  254 (433)
T ss_pred             EEEEEECCCCCCc----eEe--ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCce
Confidence            3578888754321    111  1245678899999999999987754   35888888766543332   3344456789


Q ss_pred             ECCCCcEEE-EeeCCC--cEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-CCcEEEE--ecCCCCCCC
Q 018675          126 WNASGTLLA-TCGRDK--SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVW--WAEDTDSDN  199 (352)
Q Consensus       126 ~~~~~~~l~-s~~~d~--~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw--~~~~~~~~~  199 (352)
                      |+|+|+.++ +.+.++  .|.+||+..+..    ..+..+.......+|+|+++.++..+. ++...+|  ++...   .
T Consensus       255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~----~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---~  327 (433)
T PRK04922        255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQL----TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---S  327 (433)
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEECCCCCe----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---C
Confidence            999998764 555555  588888865432    223344444467899999998876664 4554444  43221   1


Q ss_pred             ceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCC---cEEEEcCC
Q 018675          200 WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL---TIKIWGAD  244 (352)
Q Consensus       200 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg---~i~iwd~~  244 (352)
                      .   ..+..    +.......+|+|+|++++..+.++   .|.+||+.
T Consensus       328 ~---~~lt~----~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~  368 (433)
T PRK04922        328 A---ERLTF----QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS  368 (433)
T ss_pred             e---EEeec----CCCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence            1   11211    112234679999999988665433   58888864

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.27  E-value=8.7e-08  Score=85.18  Aligned_cols=294  Identities=14%  Similarity=0.151  Sum_probs=150.9

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      .+.++......-..+.++|+      +.+++.++.|+.|.++|+.+.+...+.    +  -......+++|+||++++++
T Consensus        28 ~~~~i~~~~~~h~~~~~s~D------gr~~yv~~rdg~vsviD~~~~~~v~~i----~--~G~~~~~i~~s~DG~~~~v~   95 (369)
T PF02239_consen   28 VVARIPTGGAPHAGLKFSPD------GRYLYVANRDGTVSVIDLATGKVVATI----K--VGGNPRGIAVSPDGKYVYVA   95 (369)
T ss_dssp             EEEEEE-STTEEEEEE-TT-------SSEEEEEETTSEEEEEETTSSSEEEEE----E---SSEEEEEEE--TTTEEEEE
T ss_pred             EEEEEcCCCCceeEEEecCC------CCEEEEEcCCCeEEEEECCcccEEEEE----e--cCCCcceEEEcCCCCEEEEE
Confidence            34455433333234677886      468888899999999999887643222    1  12345789999999998876


Q ss_pred             e-CCCcEEEEEccCCceeeeEeecc-------ccCCeeEEEECCCCcEEEEeeCC-CcEEEEecCCCCeeEEEEEeecCc
Q 018675           93 S-FDATTCIWEDVGGDYECVATLEG-------HENEVKSVSWNASGTLLATCGRD-KSVWIWEVMPGNEFECVSVLQGHA  163 (352)
Q Consensus        93 ~-~d~~i~i~~~~~~~~~~~~~~~~-------h~~~v~~v~~~~~~~~l~s~~~d-~~v~vwd~~~~~~~~~~~~~~~h~  163 (352)
                      . ..+.+.++|..+.  +++..+..       ....+.++..+|....++..-.| +.|.+-|........ ...+. -.
T Consensus        96 n~~~~~v~v~D~~tl--e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~-~~~i~-~g  171 (369)
T PF02239_consen   96 NYEPGTVSVIDAETL--EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK-VTTIK-VG  171 (369)
T ss_dssp             EEETTEEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE-EEEEE---
T ss_pred             ecCCCceeEeccccc--cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc-eeeec-cc
Confidence            5 5789999987654  33444322       23467778778877766555554 777777765443322 12222 22


Q ss_pred             cCeeEEEEcCCCCEEEEE-eCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC-CEEEEEe--------
Q 018675          164 QDVKMVQWHPTMDVLFSC-SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-DKLVSCS--------  233 (352)
Q Consensus       164 ~~v~~~~~~~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~s~~--------  233 (352)
                      .......|.|++++++.+ ..++.|.++|....     .....+......|..++..+ .+|.. ....+.+        
T Consensus       172 ~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-----k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~  245 (369)
T PF02239_consen  172 RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-----KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPL  245 (369)
T ss_dssp             TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-----EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEE
T ss_pred             ccccccccCcccceeeecccccceeEEEeeccc-----eEEEEeeccccccccccccc-cCCCcceEEeeccccceeccc
Confidence            345577899999987664 45678888875432     22222222223344444332 23322 2222222        


Q ss_pred             -CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEec----CCCCeEEEEEccCCccccCccc
Q 018675          234 -DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASG----AADDSVQFFVESKDDLIDGPSY  307 (352)
Q Consensus       234 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~----~~d~~v~~~~~~~~~~~~~~~~  307 (352)
                       ..+.+.+||.           ..|+....+.. .... .-+..+|++ ++...    ...+.+.+++...-        
T Consensus       246 ig~~~v~v~d~-----------~~wkvv~~I~~-~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--------  304 (369)
T PF02239_consen  246 IGTDPVSVHDD-----------YAWKVVKTIPT-QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--------  304 (369)
T ss_dssp             EE--TTT-STT-----------TBTSEEEEEE--SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--------
T ss_pred             ccCCccccchh-----------hcCeEEEEEEC-CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc--------
Confidence             1223333432           23554444443 2222 333445554 33332    34467777754321        


Q ss_pred             ceeeecc-cccCcceeEEEecCCCcceEEEecCCC-eEEEEeecc
Q 018675          308 KMLLKKE-KAHDMDVNSVQWSPGERRLLASASDDG-MIKIWELAN  350 (352)
Q Consensus       308 ~~~~~~~-~~h~~~i~~~~~sp~~~~~l~s~~~Dg-~i~iw~~~~  350 (352)
                       +...+. .+-...+..+.|+++|+.+.+|.-.++ .|.|||..+
T Consensus       305 -~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T  348 (369)
T PF02239_consen  305 -KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT  348 (369)
T ss_dssp             -EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred             -ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence             111111 111234899999999998888887777 899999754

...

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.27  E-value=6e-10  Score=92.62  Aligned_cols=271  Identities=16%  Similarity=0.246  Sum_probs=162.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEccC---CceeeeEeecccc------------CCeeEEEECCCCc--EEEEee
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDVG---GDYECVATLEGHE------------NEVKSVSWNASGT--LLATCG  137 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~---~~~~~~~~~~~h~------------~~v~~v~~~~~~~--~l~s~~  137 (352)
                      .-|.++.|...|.+|++|..+|.+.++....   ++.......+.|.            ..|..+.|.++++  .++...
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            5678899999999999999999999986432   2222333444442            4588999988655  577888


Q ss_pred             CCCcEEEEecCCCCeeE--------------------------------EEEE-eecCccCeeEEEEcCCCCEEEEEeCC
Q 018675          138 RDKSVWIWEVMPGNEFE--------------------------------CVSV-LQGHAQDVKMVQWHPTMDVLFSCSYD  184 (352)
Q Consensus       138 ~d~~v~vwd~~~~~~~~--------------------------------~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d  184 (352)
                      .|.+|++|.+.......                                +.+. -.+|+.-|+++.+..|...++++ .|
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd  184 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD  184 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence            99999999874221100                                1111 23677888999999998887776 46


Q ss_pred             CcEEEEecCCCCCCCceeEeeee-ccCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEcCCcccccc-----CCCCccc
Q 018675          185 NTIKVWWAEDTDSDNWHCVQTIS-ESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGADITRMQS-----GDGYASW  257 (352)
Q Consensus       185 ~~i~iw~~~~~~~~~~~~~~~~~-~~~~~h~~~i~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~  257 (352)
                      =.|.+|+++-.+. ++..+ .+. ......+.-|++-.|+|. ...++-.+..|+|++.|++...+-.     .+.....
T Consensus       185 LRINLWnlei~d~-sFnIV-DIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  185 LRINLWNLEIIDQ-SFNIV-DIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             eeeeeccccccCC-ceeEE-EccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            6799997765432 11111 111 011112456888899996 5667778889999999987321100     0000110


Q ss_pred             eeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccc--cCcccceeeecc--cccCc---ceeEEEecCCC
Q 018675          258 RHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI--DGPSYKMLLKKE--KAHDM---DVNSVQWSPGE  330 (352)
Q Consensus       258 ~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~--~~~~~~~~~~~~--~~h~~---~i~~~~~sp~~  330 (352)
                      ... .+...-..+|..+.|+.+|.++..=.--++++|+.......  ..+....+..++  ..-+.   .-..++|+-++
T Consensus       263 ~~r-sffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~  341 (433)
T KOG1354|consen  263 SSR-SFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND  341 (433)
T ss_pred             cch-hhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence            000 11111123456678888876655545578999977432210  000000000000  00111   23457898877


Q ss_pred             cceEEEecCCCeEEEEeecc
Q 018675          331 RRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       331 ~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      . .++|||.....++++.++
T Consensus       342 ~-~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  342 S-YVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             c-eEecccccceEEEecCCC
Confidence            6 577999999999999654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.2e-09  Score=99.68  Aligned_cols=191  Identities=17%  Similarity=0.180  Sum_probs=118.9

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCC---CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE-EE
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGD---KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA-TA   92 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D---~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~   92 (352)
                      +..+.+.+.+.+|+|+      ++.++..+.+   ..|.+|++.++...    ...  .....+.+.+|+|||+.|+ +.
T Consensus       191 l~~~~~~v~~p~wSPD------G~~la~~s~~~~~~~I~~~dl~~g~~~----~l~--~~~g~~~~~~~SPDG~~la~~~  258 (427)
T PRK02889        191 ALSSPEPIISPAWSPD------GTKLAYVSFESKKPVVYVHDLATGRRR----VVA--NFKGSNSAPAWSPDGRTLAVAL  258 (427)
T ss_pred             eccCCCCcccceEcCC------CCEEEEEEccCCCcEEEEEECCCCCEE----Eee--cCCCCccceEECCCCCEEEEEE
Confidence            3457778899999997      4567666543   45888998766421    111  1224556789999998876 56


Q ss_pred             eCCCcEEEEEcc--CCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-CCcEEEEecCCC-CeeEEEEEeecCccCeeE
Q 018675           93 SFDATTCIWEDV--GGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DKSVWIWEVMPG-NEFECVSVLQGHAQDVKM  168 (352)
Q Consensus        93 ~~d~~i~i~~~~--~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~v~vwd~~~~-~~~~~~~~~~~h~~~v~~  168 (352)
                      +.++...||...  ++.   ...+..+.+......|+|+|+.|+..+. ++...+|.+... .....+ .+.+  .....
T Consensus       259 ~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g--~~~~~  332 (427)
T PRK02889        259 SRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTG--SYNTS  332 (427)
T ss_pred             ccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCC--CCcCc
Confidence            678877777643  332   2334445555677899999998776554 466777765322 221211 1222  22345


Q ss_pred             EEEcCCCCEEEEEeCCC---cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCC
Q 018675          169 VQWHPTMDVLFSCSYDN---TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL  236 (352)
Q Consensus       169 ~~~~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg  236 (352)
                      ..|+|+++.++..+.++   .|.+|++.....      ..+..   +  .......|+|+|++|+..+.++
T Consensus       333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~------~~lt~---~--~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQV------TALTD---T--TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             eEECCCCCEEEEEEccCCcEEEEEEECCCCCe------EEccC---C--CCccCceECCCCCEEEEEEecC
Confidence            78999999988766554   588887654321      11211   1  1234678999999988776543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.26  E-value=3.8e-10  Score=95.19  Aligned_cols=153  Identities=18%  Similarity=0.295  Sum_probs=123.1

Q ss_pred             ccEEEEeeCC--CeEEEEecCCCceeeeeeeeeec----ceecceEEEEECCC--CCEEEEEeCCCcEEEEEccCCceee
Q 018675           39 APVFASCSGD--KTVRIWEQSASSRFWNCKAVLEE----MHTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYEC  110 (352)
Q Consensus        39 ~~~l~s~s~D--~~v~~w~~~~~~~~~~~~~~~~~----~h~~~v~~~~~s~~--~~~l~s~~~d~~i~i~~~~~~~~~~  110 (352)
                      ..++|+||..  ..+++|+++..+++|..+..-..    .-.--++++.|-+.  ...+|++..-+.+++||...+. .+
T Consensus       161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RP  239 (412)
T KOG3881|consen  161 PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RP  239 (412)
T ss_pred             CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-cc
Confidence            4678889988  89999999988888776543211    12234578889887  7889999999999999987554 45


Q ss_pred             eEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW  190 (352)
Q Consensus       111 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw  190 (352)
                      +..+.--..+++++...|+++++++|..-+.+..+|++.+...  ...+.+-...++++..+|+.+++++++-|+.++|+
T Consensus       240 V~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIh  317 (412)
T KOG3881|consen  240 VAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIH  317 (412)
T ss_pred             eeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee--ccccCCccCCcceEEEcCCCceEEeeccceeEEEe
Confidence            6666656778999999999999999999999999999765422  23366777889999999999999999999999999


Q ss_pred             ecCC
Q 018675          191 WAED  194 (352)
Q Consensus       191 ~~~~  194 (352)
                      |+..
T Consensus       318 D~kt  321 (412)
T KOG3881|consen  318 DIKT  321 (412)
T ss_pred             eccc
Confidence            8754

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.26  E-value=1.5e-10  Score=114.01  Aligned_cols=193  Identities=16%  Similarity=0.249  Sum_probs=142.5

Q ss_pred             ecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCee
Q 018675           74 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF  153 (352)
Q Consensus        74 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  153 (352)
                      -..|.++.=+|...+.+||+.||.+++|....+.........+ +..|+.+.|+..|+.+..+..||.+-+|.+.+    
T Consensus      2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p---- 2282 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP---- 2282 (2439)
T ss_pred             cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC-cchhhhhhhcccCCceeeeccCCceeecccCC----
Confidence            3567777778888999999999999999876554322222233 48899999999999999999999999999853    


Q ss_pred             EEEEEeecCccCeeEEEEcCCCCEEEEEe---CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE
Q 018675          154 ECVSVLQGHAQDVKMVQWHPTMDVLFSCS---YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV  230 (352)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  230 (352)
                      ++....+.|........|-.  ..+++++   .++.+.+||..-......  +.      ..|...++++++-|....|+
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~--v~------~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL--VH------TCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce--ee------eecCCCceEEEEcCcceEEE
Confidence            34566778887777777754  4555553   467899998654433221  21      36889999999999999999


Q ss_pred             EEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccc
Q 018675          231 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI  302 (352)
Q Consensus       231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~  302 (352)
                      +||.+|.|++||++..++.           +.+..          +....+++.|+..|.+++|..+.-.+.
T Consensus      2353 sggr~G~v~l~D~rqrql~-----------h~~~~----------~~~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLR-----------HTFQA----------LDTREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             ecCCcCcEEEeehHHHHHH-----------HHhhh----------hhhhheeeccCcccceEEEEccccchh
Confidence            9999999999998643221           11111          234568999999999999988765443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=2.6e-09  Score=97.75  Aligned_cols=198  Identities=15%  Similarity=0.161  Sum_probs=120.1

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCC---CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE-E
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGD---KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA-T   91 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D---~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s   91 (352)
                      .+..|...+.+..|+|+      ++.++..+.+   ..|.+|++.++...    . + ........+.+|+|||+.|+ +
T Consensus       198 ~lt~~~~~v~~p~wSpD------g~~la~~s~~~~~~~l~~~dl~~g~~~----~-l-~~~~g~~~~~~~SpDG~~l~~~  265 (433)
T PRK04922        198 TILRSAEPILSPAWSPD------GKKLAYVSFERGRSAIYVQDLATGQRE----L-V-ASFRGINGAPSFSPDGRRLALT  265 (433)
T ss_pred             EeecCCCccccccCCCC------CCEEEEEecCCCCcEEEEEECCCCCEE----E-e-ccCCCCccCceECCCCCEEEEE
Confidence            34456677888999997      4677777643   46899998765421    1 1 11233445789999998775 4


Q ss_pred             EeCCC--cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-CCc--EEEEecCCCCeeEEEEEeecCccCe
Q 018675           92 ASFDA--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DKS--VWIWEVMPGNEFECVSVLQGHAQDV  166 (352)
Q Consensus        92 ~~~d~--~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~--v~vwd~~~~~~~~~~~~~~~h~~~v  166 (352)
                      .+.++  .|.+|+..++...   .+..+.......+|+|+|+.|+.++. ++.  |.++++..+. ...+. .  +....
T Consensus       266 ~s~~g~~~Iy~~d~~~g~~~---~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-~~~lt-~--~g~~~  338 (433)
T PRK04922        266 LSRDGNPEIYVMDLGSRQLT---RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-AERLT-F--QGNYN  338 (433)
T ss_pred             EeCCCCceEEEEECCCCCeE---ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEee-c--CCCCc
Confidence            45555  4778887666432   33445455567899999998877663 444  5555554332 22221 2  22234


Q ss_pred             eEEEEcCCCCEEEEEeCCC---cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC-C--cEEE
Q 018675          167 KMVQWHPTMDVLFSCSYDN---TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD-L--TIKI  240 (352)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d-g--~i~i  240 (352)
                      ...+|+|+++.++..+.++   .|.+|+......      ..+.     +........|+|+|++++..+.+ +  .|.+
T Consensus       339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~------~~Lt-----~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~  407 (433)
T PRK04922        339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV------RTLT-----PGSLDESPSFAPNGSMVLYATREGGRGVLAA  407 (433)
T ss_pred             cCEEECCCCCEEEEEECCCCceeEEEEECCCCCe------EECC-----CCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence            4689999999887665433   588887644321      1121     11123456899999987766543 3  3444


Q ss_pred             EcC
Q 018675          241 WGA  243 (352)
Q Consensus       241 wd~  243 (352)
                      +++
T Consensus       408 ~~~  410 (433)
T PRK04922        408 VST  410 (433)
T ss_pred             EEC
Confidence            443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.25  E-value=7e-08  Score=81.30  Aligned_cols=284  Identities=12%  Similarity=0.119  Sum_probs=168.4

Q ss_pred             CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC---CcEEEEEccC--CceeeeEeeccccCCee
Q 018675           48 DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD---ATTCIWEDVG--GDYECVATLEGHENEVK  122 (352)
Q Consensus        48 D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~i~i~~~~~--~~~~~~~~~~~h~~~v~  122 (352)
                      ++-|.+|++.+.....+....+  .+....+-++|+|+++.|-++..+   +.+..|....  +....+.....-..+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v--~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLV--AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhc--cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence            5779999987543322222222  245677889999999988877654   6777776543  55444433222223447


Q ss_pred             EEEECCCCcEEEEeeC-CCcEEEEecCCCCeeEEEEEeecCccC----------eeEEEEcCCCCEEEEEeC-CCcEEEE
Q 018675          123 SVSWNASGTLLATCGR-DKSVWIWEVMPGNEFECVSVLQGHAQD----------VKMVQWHPTMDVLFSCSY-DNTIKVW  190 (352)
Q Consensus       123 ~v~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~l~s~~~-d~~i~iw  190 (352)
                      -+++++++++++++.. -+.|.++-++.............|...          +-...+.|++++|++..- .-.|.+|
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence            8999999999888864 478999988654333222222234333          667889999998887653 3358888


Q ss_pred             ecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEcCCcc--ccccCCCCccceeeEEeec-c
Q 018675          191 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADIT--RMQSGDGYASWRHLCTISG-Y  266 (352)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~-~  266 (352)
                      ++.+......    .....  .-+..-..|.|+|++++.-..+ -+++|.+|..+..  ++.      ....+.++.. +
T Consensus       173 ~~~dg~L~~~----~~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~------~lQ~i~tlP~dF  240 (346)
T COG2706         173 DLDDGKLTPA----DPAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE------ELQTIDTLPEDF  240 (346)
T ss_pred             EcccCccccc----ccccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE------EeeeeccCcccc
Confidence            8775422111    11111  1234566799999999866554 5899999976532  111      0011111111 1


Q ss_pred             -cCcceEEEEecCCceEEecCCCC--eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeE
Q 018675          267 -HDRTIFSVHWSREGIIASGAADD--SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMI  343 (352)
Q Consensus       267 -~~~~i~~~~~~~~~~~~s~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i  343 (352)
                       -....-.+..+++|.++-++..+  .|.++......-   .  -.+......+...-.++.|+|+++.++|+.-++..|
T Consensus       241 ~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g---~--L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i  315 (346)
T COG2706         241 TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG---K--LELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNI  315 (346)
T ss_pred             CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC---E--EEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcE
Confidence             12344567788888655555443  566664433210   0  111222233444467888999998777766666779


Q ss_pred             EEEeecc
Q 018675          344 KIWELAN  350 (352)
Q Consensus       344 ~iw~~~~  350 (352)
                      .+|.+..
T Consensus       316 ~vf~~d~  322 (346)
T COG2706         316 TVFERDK  322 (346)
T ss_pred             EEEEEcC
Confidence            9998754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.22  E-value=2.3e-07  Score=82.53  Aligned_cols=284  Identities=13%  Similarity=0.114  Sum_probs=142.8

Q ss_pred             cEE-EEeeCCCeEEEEecCCCceeeeeeeeeecceecce-EEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccc
Q 018675           40 PVF-ASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTV-RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGH  117 (352)
Q Consensus        40 ~~l-~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h  117 (352)
                      .++ ++-..+++|.+.|..+.+......    .  ...+ ..+.|+|||+++.+++.|+.+.++|..+.+  .+..++. 
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~----~--~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~~-   76 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIP----T--GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIKV-   76 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-------STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE--
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEc----C--CCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEec-
Confidence            344 455678999999988765332221    1  1122 346799999999999999999999987764  3445543 


Q ss_pred             cCCeeEEEECCCCcEEEEee-CCCcEEEEecCCCCeeEEEEEeec----CccCeeEEEEcCCCCEEEEEeC-CCcEEEEe
Q 018675          118 ENEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGNEFECVSVLQG----HAQDVKMVQWHPTMDVLFSCSY-DNTIKVWW  191 (352)
Q Consensus       118 ~~~v~~v~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~  191 (352)
                      ......++++++|++++++. .++.+.++|....+..+.+.....    ....+..+-.+|....++..-. .+.|-+-|
T Consensus        77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen   77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence            34567899999999877665 689999999865544333322110    1234556666777775555544 46666666


Q ss_pred             cCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEcCCccccccCCCCccceeeEEeecccCcc
Q 018675          192 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT  270 (352)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (352)
                      ..+..  .. ....+.     -........|+|+++|++.+ -.++.|-++|.+..++.......        ...|...
T Consensus       157 y~d~~--~~-~~~~i~-----~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g--------~~p~~~~  220 (369)
T PF02239_consen  157 YSDPK--NL-KVTTIK-----VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG--------KKPHPGP  220 (369)
T ss_dssp             TTTSS--CE-EEEEEE-------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S--------SSBEETT
T ss_pred             ecccc--cc-ceeeec-----ccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc--------ccccccc
Confidence            54431  11 122222     12345678899999987664 45678999987643321100000        0001111


Q ss_pred             eEEEEecCCc-eEEec-CCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEE---ecCCCeEEE
Q 018675          271 IFSVHWSREG-IIASG-AADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLAS---ASDDGMIKI  345 (352)
Q Consensus       271 i~~~~~~~~~-~~~s~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s---~~~Dg~i~i  345 (352)
                      ...+.-...+ ..+.. .....+-..-.......+...++. +++....... .-+.-||+++++.+.   +...++|.|
T Consensus       221 ~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv-v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~v  298 (369)
T PF02239_consen  221 GANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV-VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQV  298 (369)
T ss_dssp             EEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE-EEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEE
T ss_pred             cccccCCCcceEEeeccccceecccccCCccccchhhcCeE-EEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEE
Confidence            1111111111 11111 111222222111111122222332 2333333444 667779999887766   566789999


Q ss_pred             Eeecc
Q 018675          346 WELAN  350 (352)
Q Consensus       346 w~~~~  350 (352)
                      +|..+
T Consensus       299 iD~~t  303 (369)
T PF02239_consen  299 IDKKT  303 (369)
T ss_dssp             EECCG
T ss_pred             EECcC
Confidence            99865

...

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.20  E-value=1.3e-09  Score=88.88  Aligned_cols=208  Identities=15%  Similarity=0.207  Sum_probs=135.7

Q ss_pred             cceEEEEEccCCCCCCCcc-EEEEeeCCCeEEEEecCCCceeeeeeeee-ecceecceEEEEECCCCCEEEEEeCCCcEE
Q 018675           22 DRVWSLAWKPTAGVDGVAP-VFASCSGDKTVRIWEQSASSRFWNCKAVL-EEMHTRTVRSCAWSPSGKLLATASFDATTC   99 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~-~l~s~s~D~~v~~w~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   99 (352)
                      ..++.|-|+-... +  +. .++-+-.+|.|.++............... .+.-.....++.|++.+..++++..+|.+.
T Consensus        70 s~~~dm~w~~~~~-~--g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~  146 (339)
T KOG0280|consen   70 STEFDMLWRIRET-D--GDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS  146 (339)
T ss_pred             cccceeeeeeccC-C--ccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEE
Confidence            3456666654221 1  22 45666778999999765432211111110 000111245788999999999999999988


Q ss_pred             EEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC-CCCE
Q 018675          100 IWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDV  177 (352)
Q Consensus       100 i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~  177 (352)
                      +-+......+..+.++.|+-+.+...|+. +.+++++||+|+.+..||++..+. ......+-|...|.++.-+| ...+
T Consensus       147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i~~n~kvH~~GV~SI~ss~~~~~~  225 (339)
T KOG0280|consen  147 GVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FIWHNSKVHTSGVVSIYSSPPKPTY  225 (339)
T ss_pred             EEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-eeeecceeeecceEEEecCCCCCce
Confidence            54444444455567889999999999975 557899999999999999984332 22233456888899988776 4678


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC--CCEEEEEeCCCcEEEEcC
Q 018675          178 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--GDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       178 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~--~~~l~s~~~dg~i~iwd~  243 (352)
                      +++|+.|..|++||.+.-.       +.+....  -++.||.+..+|.  +..|++|..+| .+|-+.
T Consensus       226 I~TGsYDe~i~~~DtRnm~-------kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~  283 (339)
T KOG0280|consen  226 IATGSYDECIRVLDTRNMG-------KPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDS  283 (339)
T ss_pred             EEEeccccceeeeehhccc-------CccccCc--cccceEEEEecchhhhHHHHHHHhcC-ceEEEe
Confidence            9999999999999865421       1222222  2378999999995  34566666655 455543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.20  E-value=7.2e-07  Score=75.29  Aligned_cols=260  Identities=13%  Similarity=0.176  Sum_probs=157.0

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeC---CCeEEEEecCCC-ceeeeeeeeeecceecceEEEEECCCCCEEEEEeC
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSG---DKTVRIWEQSAS-SRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF   94 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~---D~~v~~w~~~~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   94 (352)
                      .+.+..+-++|+|+.      +.|.++-.   +|.+.-|.++.. ..+........  ...+-..++++++|++++++..
T Consensus        37 ~~~~nptyl~~~~~~------~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY  108 (346)
T COG2706          37 AELGNPTYLAVNPDQ------RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANY  108 (346)
T ss_pred             cccCCCceEEECCCC------CEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEc
Confidence            466777788888873      56777743   577888877653 22211111111  1123378899999999999886


Q ss_pred             C-CcEEEEEccC-CceeeeEeeccccCC----------eeEEEECCCCcEEEEee--CCCcEEEEecCCCCeeEEEEE-e
Q 018675           95 D-ATTCIWEDVG-GDYECVATLEGHENE----------VKSVSWNASGTLLATCG--RDKSVWIWEVMPGNEFECVSV-L  159 (352)
Q Consensus        95 d-~~i~i~~~~~-~~~~~~~~~~~h~~~----------v~~v~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~-~  159 (352)
                      . +.|.++-... +..........|.+.          +....+.|++++|++..  .|+ |.+|++..+.. ..... .
T Consensus       109 ~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L-~~~~~~~  186 (346)
T COG2706         109 HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKL-TPADPAE  186 (346)
T ss_pred             cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCcc-ccccccc
Confidence            4 6777876533 332222222335544          88899999999888774  554 88999875432 11111 1


Q ss_pred             ecCccCeeEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCCCceeEeeeeccCCC--CcccEEEEEEcCCCCEEEEEeC-C
Q 018675          160 QGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNG--HSSTIWALSFNAKGDKLVSCSD-D  235 (352)
Q Consensus       160 ~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~l~~~~~~~~l~s~~~-d  235 (352)
                      ..-...-+.+.|||++++.....+ +++|.+|..... ...+..++.+......  -.....+|..+|+|++|.++.. .
T Consensus       187 v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~  265 (346)
T COG2706         187 VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH  265 (346)
T ss_pred             cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC
Confidence            122345678999999998877766 788999976543 2344445544322222  2356778899999999988754 3


Q ss_pred             CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCC-CeEEEEEcc
Q 018675          236 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAAD-DSVQFFVES  297 (352)
Q Consensus       236 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d-~~v~~~~~~  297 (352)
                      ..|.+|.++-.        ...-........+......+.+++++ +|+++..+ ..+.+|...
T Consensus       266 dsI~~f~V~~~--------~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         266 DSIAVFSVDPD--------GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CeEEEEEEcCC--------CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            36777755311        00011112223345556777777765 55555554 467777543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.19  E-value=9.3e-10  Score=103.45  Aligned_cols=190  Identities=17%  Similarity=0.264  Sum_probs=134.4

Q ss_pred             EEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccC-----eeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 018675          124 VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD-----VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD  198 (352)
Q Consensus       124 v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~  198 (352)
                      ..+.-....++.+..++.+.+||...+...   .... +...     ..-+.++++.-++++|+.-+.|.+|+.... ..
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~---~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~  167 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVL---SKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-NK  167 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCcee---hhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-CC
Confidence            333445567888888899999997644311   1111 1111     122345666678899999999999976532 11


Q ss_pred             CceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC
Q 018675          199 NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR  278 (352)
Q Consensus       199 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  278 (352)
                      .   .     ...||++.|.++.++-+|.++++.++|..+|+|+++..+...          +.. -.|...++.+.+.+
T Consensus       168 p---~-----~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~----------~~~-fgHsaRvw~~~~~~  228 (967)
T KOG0974|consen  168 P---I-----RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG----------CTG-FGHSARVWACCFLP  228 (967)
T ss_pred             c---c-----eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC----------ccc-ccccceeEEEEecc
Confidence            1   1     235899999999999999999999999999999987543322          011 12667788888888


Q ss_pred             CceEEecCCCCeEEEEEccCCccccCcccceeeeccccc-CcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          279 EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH-DMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       279 ~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      . .+++++.|.+.++|......          +....+| ...|..++..++.. +++|++.|+.+++|+.-
T Consensus       229 n-~i~t~gedctcrvW~~~~~~----------l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  229 N-RIITVGEDCTCRVWGVNGTQ----------LEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             c-eeEEeccceEEEEEecccce----------ehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhh
Confidence            8 99999999999999443321          2244556 35699999988764 68899999999999874

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=1e-09  Score=96.79  Aligned_cols=300  Identities=15%  Similarity=0.254  Sum_probs=172.5

Q ss_pred             ccceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceee---eeeeeeecceecceEEEEECC
Q 018675            8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFW---NCKAVLEEMHTRTVRSCAWSP   84 (352)
Q Consensus         8 ~~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~   84 (352)
                      +|+-..+..+.||.+.|..+.--.+.      .-|+++|.|++|++|.+.......   .|. .....|+++|.++.|-.
T Consensus       722 n~~~irL~nf~GH~~~iRai~AidNE------NSFiSASkDKTVKLWSik~EgD~~~tsaCQ-fTY~aHkk~i~~igfL~  794 (1034)
T KOG4190|consen  722 NFDHIRLCNFTGHQEKIRAIAAIDNE------NSFISASKDKTVKLWSIKPEGDEIGTSACQ-FTYQAHKKPIHDIGFLA  794 (1034)
T ss_pred             ccceeeeecccCcHHHhHHHHhcccc------cceeeccCCceEEEEEeccccCccccceee-eEhhhccCcccceeeee
Confidence            34445567889999999887654443      469999999999999876432111   122 23357999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCceeeeEe---eccccCCeeEEEECCCCcE-EEEeeCCCcEEEEecCCCCeeEEEEEee
Q 018675           85 SGKLLATASFDATTCIWEDVGGDYECVAT---LEGHENEVKSVSWNASGTL-LATCGRDKSVWIWEVMPGNEFECVSVLQ  160 (352)
Q Consensus        85 ~~~~l~s~~~d~~i~i~~~~~~~~~~~~~---~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~  160 (352)
                      +-+.+++  .|+.|.+||..-+..-....   ..+..+.|.|+. +-+... ++-|+...+|+++|.+...-...+....
T Consensus       795 ~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn  871 (1034)
T KOG4190|consen  795 DLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN  871 (1034)
T ss_pred             ccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEecc
Confidence            9988875  57999999976543211011   112223455542 112333 4445788999999988765444444432


Q ss_pred             --cCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCC-CCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCc
Q 018675          161 --GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD-SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT  237 (352)
Q Consensus       161 --~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~  237 (352)
                        +...-+++++..|.|+.++++-..|.|.+.|.+... .++|+...          -....++ -|..+.|+....|..
T Consensus       872 a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme----------cdllqla-apsdq~L~~saldHs  940 (1034)
T KOG4190|consen  872 APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME----------CDLLQLA-APSDQALAQSALDHS  940 (1034)
T ss_pred             CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc----------chhhhhc-CchhHHHHhhcccce
Confidence              233457788999999999999999999999876653 22232211          1111121 255566777777888


Q ss_pred             EEE-EcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccc
Q 018675          238 IKI-WGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA  316 (352)
Q Consensus       238 i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~  316 (352)
                      +.+ |-.-...+.-... ....+.+-        +.+    -+.-++.+-..+.+.+|.......... .-.++  ....
T Consensus       941 laVnWhaldgimh~q~k-pppepahf--------lqs----vgpSLV~a~~Gn~lgVYad~a~~ha~s-titKi--R~d~ 1004 (1034)
T KOG4190|consen  941 LAVNWHALDGIMHLQDK-PPPEPAHF--------LQS----VGPSLVTAQNGNILGVYADSAELHAES-TITKI--RPDE 1004 (1034)
T ss_pred             eEeeehhcCCeeeeccC-CCCcchhh--------hhc----cCceeEEeccCcEEEEEecchhhhhhh-hhccc--cccc
Confidence            887 7421111100000 00000000        000    112344554555666774432111110 00011  1233


Q ss_pred             cCcceeEEEecCCCcceEEEecCCCeEEE
Q 018675          317 HDMDVNSVQWSPGERRLLASASDDGMIKI  345 (352)
Q Consensus       317 h~~~i~~~~~sp~~~~~l~s~~~Dg~i~i  345 (352)
                      ..+..++++-.|-+..+| .|.+-|.|.+
T Consensus      1005 f~G~lTala~LPLN~afL-aGne~G~IaL 1032 (1034)
T KOG4190|consen 1005 FPGTLTALAPLPLNCAFL-AGNEHGAIAL 1032 (1034)
T ss_pred             cCCccceeeeccccchhh-ccCCCCceee
Confidence            456788899888776544 6888888875

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.14  E-value=1.5e-08  Score=89.97  Aligned_cols=189  Identities=20%  Similarity=0.285  Sum_probs=134.8

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecce-ecceEEE------EECC--------------CCCEEEEEeCCCc
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH-TRTVRSC------AWSP--------------SGKLLATASFDAT   97 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h-~~~v~~~------~~s~--------------~~~~l~s~~~d~~   97 (352)
                      ..+||....||.+|+|+...++..-..   ....| .+.-++.      ..+|              +-.+++-|...|.
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~---~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEF---APIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeee---ccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            578999999999999997665311000   00001 1111111      1122              3347788889999


Q ss_pred             EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCE
Q 018675           98 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV  177 (352)
Q Consensus        98 i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  177 (352)
                      |.+|+...++..-...-.+|.+.|.++.++.+-..|.+++.|+.+..|+.....   .++.+.+....+.+++.+|++.+
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~---~~~~~~~~~~~~~sl~is~D~~~  158 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV---IIRIWKEQKPLVSSLCISPDGKI  158 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce---eeeeeccCCCccceEEEcCCCCE
Confidence            999998777655444447899999999999888899999999999999986543   45566677778889999999999


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC-----CCEEEEE-eCCCcEEEEcCC
Q 018675          178 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-----GDKLVSC-SDDLTIKIWGAD  244 (352)
Q Consensus       178 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-----~~~l~s~-~~dg~i~iwd~~  244 (352)
                      +++|+  +.|++|+++..     +.+.++    .||.++|.++.|--+     |.++.++ ..+.-+.+|-.+
T Consensus       159 l~~as--~~ik~~~~~~k-----evv~~f----tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  159 LLTAS--RQIKVLDIETK-----EVVITF----TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             EEecc--ceEEEEEccCc-----eEEEEe----cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            98876  78999987654     233333    489999999999766     6666654 456678888543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.14  E-value=1.2e-06  Score=77.78  Aligned_cols=244  Identities=13%  Similarity=0.146  Sum_probs=145.3

Q ss_pred             CcEEEEEc--cCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC----CCcEEEEecCCC-CeeEEEEEeecCccCeeE
Q 018675           96 ATTCIWED--VGGDYECVATLEGHENEVKSVSWNASGTLLATCGR----DKSVWIWEVMPG-NEFECVSVLQGHAQDVKM  168 (352)
Q Consensus        96 ~~i~i~~~--~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~----d~~v~vwd~~~~-~~~~~~~~~~~h~~~v~~  168 (352)
                      +.|..|+.  .++++..+.... -......+.++|++++|+++.+    ++.|..|++... .....+..........+.
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~   91 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH   91 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence            56776655  445544444332 2345667889999999998877    469999998765 455555544433345578


Q ss_pred             EEEcCCCCEEEEEeC-CCcEEEEecCCCCCCCceeEeeee------ccCCCCcccEEEEEEcCCCCEEEEEeC-CCcEEE
Q 018675          169 VQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTIS------ESNNGHSSTIWALSFNAKGDKLVSCSD-DLTIKI  240 (352)
Q Consensus       169 ~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~------~~~~~h~~~i~~l~~~~~~~~l~s~~~-dg~i~i  240 (352)
                      ++++|++++|+++.. ++.+.++++..... .........      ...........++.++|+++++++... ...|.+
T Consensus        92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~-l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~  170 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGS-LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV  170 (345)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSE-EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             EEEecCCCEEEEEEccCCeEEEEEccCCcc-cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence            999999999888875 88999998765311 111111110      000112345778999999998887643 457888


Q ss_pred             EcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCC-ccccCcccceeeeccccc
Q 018675          241 WGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKD-DLIDGPSYKMLLKKEKAH  317 (352)
Q Consensus       241 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~-~~~~~~~~~~~~~~~~~h  317 (352)
                      |+++....       .......+..........+.+++++  .++....++.|.++..... ..+........+......
T Consensus       171 ~~~~~~~~-------~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  243 (345)
T PF10282_consen  171 YDIDDDTG-------KLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG  243 (345)
T ss_dssp             EEE-TTS--------TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred             EEEeCCCc-------eEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence            87653210       0111222222345567888899886  4566677888888866521 111000000000010111


Q ss_pred             CcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          318 DMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       318 ~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      ......|+++||++.++++......|-+|++
T Consensus       244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             SSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred             cCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence            2257889999999999999988999999998

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.11  E-value=4.2e-08  Score=89.67  Aligned_cols=190  Identities=16%  Similarity=0.211  Sum_probs=117.0

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCC---CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE-E
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGD---KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT-A   92 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D---~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~   92 (352)
                      +..+...+.+..|+|+      ++.++.++.+   ..|.+|++.++...    . + ..+...+.+++|+|||+.|+. .
T Consensus       185 l~~~~~~~~~p~~Spd------g~~la~~~~~~~~~~i~v~d~~~g~~~----~-~-~~~~~~~~~~~~spDg~~l~~~~  252 (417)
T TIGR02800       185 ITRSREPILSPAWSPD------GQKLAYVSFESGKPEIYVQDLATGQRE----K-V-ASFPGMNGAPAFSPDGSKLAVSL  252 (417)
T ss_pred             eecCCCceecccCCCC------CCEEEEEEcCCCCcEEEEEECCCCCEE----E-e-ecCCCCccceEECCCCCEEEEEE
Confidence            3445667888889997      4667766543   47999998765321    1 1 113445677899999987764 4


Q ss_pred             eCCC--cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-CC--cEEEEecCCCCeeEEEEEeecCccCee
Q 018675           93 SFDA--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DK--SVWIWEVMPGNEFECVSVLQGHAQDVK  167 (352)
Q Consensus        93 ~~d~--~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~h~~~v~  167 (352)
                      +.++  .|.+|+..++..   ..+..+........|+|+++.|+.++. ++  .|.++++..+..    ..+..+.....
T Consensus       253 ~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~----~~l~~~~~~~~  325 (417)
T TIGR02800       253 SKDGNPDIYVMDLDGKQL---TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV----RRLTFRGGYNA  325 (417)
T ss_pred             CCCCCccEEEEECCCCCE---EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeecCCCCcc
Confidence            4444  477777665533   233344445567789999998776654 33  466667654332    12222334556


Q ss_pred             EEEEcCCCCEEEEEeCCC---cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCC
Q 018675          168 MVQWHPTMDVLFSCSYDN---TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL  236 (352)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg  236 (352)
                      ...|+|++..++.++.++   .|.+|++....   .   ..+...     .......|+|++++|+..+.++
T Consensus       326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~---~---~~l~~~-----~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG---E---RVLTDT-----GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CeEECCCCCEEEEEEccCCceEEEEEeCCCCC---e---EEccCC-----CCCCCceECCCCCEEEEEEeCC
Confidence            788999999988877765   67777654321   1   112111     1123457999999888776554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.10  E-value=1.2e-07  Score=86.56  Aligned_cols=155  Identities=18%  Similarity=0.242  Sum_probs=98.9

Q ss_pred             eecceEEEEECCCCCEEEEEeCC---CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEE-EeeCCC--cEEEEe
Q 018675           73 HTRTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDK--SVWIWE  146 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d---~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~--~v~vwd  146 (352)
                      +...+...+|+|||+.|+.+..+   ..+.+|+..++....   +..+.+.+.+++|+|+++.|+ +.+.++  .|.+|+
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence            44568889999999999887654   478899887664332   233455677899999998765 444444  578888


Q ss_pred             cCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-CC--cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc
Q 018675          147 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN  223 (352)
Q Consensus       147 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~  223 (352)
                      +..+..    ..+..+........|+|+++.++..+. ++  .|.+++.....      ...+.    .+...+....|+
T Consensus       265 ~~~~~~----~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------~~~l~----~~~~~~~~~~~s  330 (417)
T TIGR02800       265 LDGKQL----TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------VRRLT----FRGGYNASPSWS  330 (417)
T ss_pred             CCCCCE----EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------EEEee----cCCCCccCeEEC
Confidence            764432    222333333456789999998776654 34  35555543221      11221    123445678899


Q ss_pred             CCCCEEEEEeCCC---cEEEEcCC
Q 018675          224 AKGDKLVSCSDDL---TIKIWGAD  244 (352)
Q Consensus       224 ~~~~~l~s~~~dg---~i~iwd~~  244 (352)
                      |++++++.++.++   .|.+||+.
T Consensus       331 pdg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       331 PDGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             CCCCEEEEEEccCCceEEEEEeCC
Confidence            9999998877765   56666654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=3.8e-08  Score=87.32  Aligned_cols=248  Identities=15%  Similarity=0.229  Sum_probs=143.8

Q ss_pred             eecceEEEEECCCCCEE-EEEeCCCcEEEEEccCCceeeeEeecccc-CC-eeEEEECCCCcEEEEeeCCCcEEEEecCC
Q 018675           73 HTRTVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEGHE-NE-VKSVSWNASGTLLATCGRDKSVWIWEVMP  149 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l-~s~~~d~~i~i~~~~~~~~~~~~~~~~h~-~~-v~~v~~~~~~~~l~s~~~d~~v~vwd~~~  149 (352)
                      |...-+.+..+|||+++ |+|..-..|++||..+-.    ..+.-|. .. |.-.-.+-|-..++--..|++|-+... -
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~  124 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-Y  124 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccce----eeeeecccccceeEEEeccchhhheEeecCceeeehhh-c
Confidence            56677889999999985 677788899999875432    2233232 23 333333444444555667777766542 1


Q ss_pred             CCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE
Q 018675          150 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL  229 (352)
Q Consensus       150 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  229 (352)
                      +.- .....    ......+.++.-..-|+.++....|.=++++...   +  +..+    ......++++..++-..+|
T Consensus       125 G~h-y~~RI----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr---f--L~P~----~~~~~~lN~v~in~~hgLl  190 (703)
T KOG2321|consen  125 GRH-YRTRI----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR---F--LNPF----ETDSGELNVVSINEEHGLL  190 (703)
T ss_pred             Cee-eeeec----CcCCccccccCCCccEEEeecCcceEEEEccccc---c--cccc----ccccccceeeeecCccceE
Confidence            110 00110    1123345554322224444444445444444321   1  1111    1234689999999999999


Q ss_pred             EEEeCCCcEEEEcCCccccccCCCCccceeeEEee-cccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCccc
Q 018675          230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS-GYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY  307 (352)
Q Consensus       230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~  307 (352)
                      ++|+.+|.|-+||.+.............  ..... ......++++.|..++ .++.|..+|.+.+|+....        
T Consensus       191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~--------  260 (703)
T KOG2321|consen  191 ACGTEDGVVEFWDPRDKSRVGTLDAASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS--------  260 (703)
T ss_pred             EecccCceEEEecchhhhhheeeecccc--cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC--------
Confidence            9999999999999764332211111000  00000 1123458899999877 6899999999999965431        


Q ss_pred             ceeeecccccCcceeEEEecCCCc-ceEEEecCCCeEEEEeecc
Q 018675          308 KMLLKKEKAHDMDVNSVQWSPGER-RLLASASDDGMIKIWELAN  350 (352)
Q Consensus       308 ~~~~~~~~~h~~~i~~~~~sp~~~-~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ..++...++...+|..+.|.+.+. ..++|.. -..++|||-..
T Consensus       261 ~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~  303 (703)
T KOG2321|consen  261 KPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECT  303 (703)
T ss_pred             CceeecccCCccceeeecccccCCCceEEecc-hHHhhhccccc
Confidence            233445566778999999976532 3354443 45699998654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.07  E-value=3.7e-07  Score=90.02  Aligned_cols=234  Identities=18%  Similarity=0.260  Sum_probs=133.4

Q ss_pred             ceEEEEECCCCCEEEEEeC---C---CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC---CCcEEEEe
Q 018675           76 TVRSCAWSPSGKLLATASF---D---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR---DKSVWIWE  146 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~~---d---~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~v~vwd  146 (352)
                      .-..++|-.||.++|+.+.   .   ..+++|+-. |.  ...+.+.-.+--.+++|.|+|+++++...   ...|.+|.
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence            3456889999999998774   2   478899754 32  22333333334457899999999998865   34566665


Q ss_pred             cCCCCeeEEEEE-eecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC
Q 018675          147 VMPGNEFECVSV-LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK  225 (352)
Q Consensus       147 ~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~  225 (352)
                      - .|-....... +......+..+.|++++..|+.--.|. |.+|...+-   .|+..+.+...   ....+..+.|+|.
T Consensus       288 r-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY---HWYLKqei~~~---~~~~~~~~~Wdpe  359 (928)
T PF04762_consen  288 R-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY---HWYLKQEIRFS---SSESVNFVKWDPE  359 (928)
T ss_pred             c-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC---EEEEEEEEEcc---CCCCCCceEECCC
Confidence            2 3322111111 113445789999999999998866555 999954432   25555555321   1233445999996


Q ss_pred             CC-EEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC-CceEEecCCCCeEEEEEccCCcccc
Q 018675          226 GD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLID  303 (352)
Q Consensus       226 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~s~~~d~~v~~~~~~~~~~~~  303 (352)
                      .. .|...+.+|.+..++......              ....         ..+ +.-+++.-+...+.+-......   
T Consensus       360 ~p~~L~v~t~~g~~~~~~~~~~v~--------------~s~~---------~~~~D~g~vaVIDG~~lllTpf~~a~---  413 (928)
T PF04762_consen  360 KPLRLHVLTSNGQYEIYDFAWDVS--------------RSPG---------SSPNDNGTVAVIDGNKLLLTPFRRAV---  413 (928)
T ss_pred             CCCEEEEEecCCcEEEEEEEEEEE--------------ecCC---------CCccCceEEEEEeCCeEEEecccccC---
Confidence            54 466667668887775421100              0000         001 1111222222234443222111   


Q ss_pred             CcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       304 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      -+.++ ...+ .....+|++++|++++.. ++.-..||.|.+|+..
T Consensus       414 VPPPM-s~~~-l~~~~~v~~vaf~~~~~~-~avl~~d~~l~~~~~~  456 (928)
T PF04762_consen  414 VPPPM-SSYE-LELPSPVNDVAFSPSNSR-FAVLTSDGSLSIYEWD  456 (928)
T ss_pred             CCchH-hceE-EcCCCCcEEEEEeCCCCe-EEEEECCCCEEEEEec
Confidence            11111 1111 234578999999998764 6778889999999853

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.07  E-value=9.8e-08  Score=78.07  Aligned_cols=271  Identities=15%  Similarity=0.187  Sum_probs=160.5

Q ss_pred             CeEEEEecCCCceeeeeeeeeecceecceEEEEEC---CCCC-EEEEEeCCCcEEEEEccCCceeeeEeecccc------
Q 018675           49 KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWS---PSGK-LLATASFDATTCIWEDVGGDYECVATLEGHE------  118 (352)
Q Consensus        49 ~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s---~~~~-~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~------  118 (352)
                      |.+.+|++...+..- ....... -+..+..+.|.   .+|. .++-+-.+|.|.+|.....  ....++.+-.      
T Consensus        46 Gkl~Lys~~d~~~~~-l~~~q~~-dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~--~ss~~L~~ls~~ki~~  121 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSP-LDTLQCT-DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED--ESSVHLRGLSSKKISV  121 (339)
T ss_pred             cceEEEeecccccCc-cceeeee-cccccceeeeeeccCCccceeeeccccceEEEEeeccc--eeeeeecccchhhhhh
Confidence            567777765543211 1111222 23445556664   2455 4566667888988864322  1122222211      


Q ss_pred             CCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCC-CEEEEEeCCCcEEEEecCCCCC
Q 018675          119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDS  197 (352)
Q Consensus       119 ~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~  197 (352)
                      ..--++.|++.+..++++-.+|.+.+-+... ...+.+..++.|..+++.+.|+... +.+.+|+.|+.+..||++-...
T Consensus       122 ~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~-~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  122 VEALSLDISTSGTKIFVSDSRGSISGVYETE-MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             eeeeEEEeeccCceEEEEcCCCcEEEEecce-eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence            1234778899999999988889888544322 2233345678899999999987643 5788999999999999873321


Q ss_pred             CCceeEeeeeccCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEcCCc-cccccCCCCccceeeEEeecccCcceEEEE
Q 018675          198 DNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGADI-TRMQSGDGYASWRHLCTISGYHDRTIFSVH  275 (352)
Q Consensus       198 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  275 (352)
                        +     +......|...|.++.-+|. ..++++|+-|..|++||.+. .+....             ....+.++.+.
T Consensus       201 --~-----i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-------------~~v~GGVWRi~  260 (339)
T KOG0280|consen  201 --F-----IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-------------AKVGGGVWRIK  260 (339)
T ss_pred             --e-----eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc-------------CccccceEEEE
Confidence              1     11122358889999988874 77899999999999999873 222111             11234566676


Q ss_pred             ecCCc---eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEe-cCCCeEE-EEeecc
Q 018675          276 WSREG---IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA-SDDGMIK-IWELAN  350 (352)
Q Consensus       276 ~~~~~---~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~-~~Dg~i~-iw~~~~  350 (352)
                      ..|..   .++++..+|. ++.....+..    .....+.....|.+-++.-.|.... -+|||+ ..|+.|+ +|-..+
T Consensus       261 ~~p~~~~~lL~~CMh~G~-ki~~~~~~~~----e~~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  261 HHPEIFHRLLAACMHNGA-KILDSSDKVL----EFQIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             ecchhhhHHHHHHHhcCc-eEEEeccccc----chheeeeccccccceeecccccccc-ceeeeeeccccceeeeeeecc
Confidence            66643   2555555553 2222211100    0111233456777777777784432 357775 4688766 886543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.05  E-value=9.6e-07  Score=72.42  Aligned_cols=243  Identities=17%  Similarity=0.256  Sum_probs=126.7

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEccC--CceeeeEee-ccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEE
Q 018675           80 CAWSPSGKLLATASFDATTCIWEDVG--GDYECVATL-EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV  156 (352)
Q Consensus        80 ~~~s~~~~~l~s~~~d~~i~i~~~~~--~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  156 (352)
                      ++.+.+|+.||.- .|..|-|-....  ........+ +...-.-+.++|+||+.+||.+...|+|+++|+.... .-.+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence            3456778877754 455555543221  111111111 1122345789999999999999999999999986332 1111


Q ss_pred             EE---eec-CccCeeEEEEcCC------CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC
Q 018675          157 SV---LQG-HAQDVKMVQWHPT------MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG  226 (352)
Q Consensus       157 ~~---~~~-h~~~v~~~~~~~~------~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~  226 (352)
                      ..   ..+ -...|..+.|-+-      ...|++-..+|.++-|.+...+...++..+++.. ...+...|.++.++|..
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf-~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSF-SSHYPHGINSAVYHPKH  159 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEe-cccCCCceeEEEEcCCC
Confidence            11   111 1134555555432      1246777788888888764433344444444432 12346789999999998


Q ss_pred             CEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEec-CCceEEecCCCCeEEEEEccCCccccCc
Q 018675          227 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS-REGIIASGAADDSVQFFVESKDDLIDGP  305 (352)
Q Consensus       227 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~s~~~d~~v~~~~~~~~~~~~~~  305 (352)
                      ++|+.||....    + +........++..|+.+..      .+-+..... .++.-......+..++.           
T Consensus       160 ~LLlVgG~~~~----~-~~~s~a~~~GLtaWRiL~~------~Pyyk~v~~~~~~~~~~~~~~~~~~~~-----------  217 (282)
T PF15492_consen  160 RLLLVGGCEQN----Q-DGMSKASSCGLTAWRILSD------SPYYKQVTSSEDDITASSKRRGLLRIP-----------  217 (282)
T ss_pred             CEEEEeccCCC----C-CccccccccCceEEEEcCC------CCcEEEccccCccccccccccceeecc-----------
Confidence            88777664322    0 0001112334444543311      111110000 01111111111111100           


Q ss_pred             ccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          306 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       306 ~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ..+ +......-...|..+..|||++ +||+...+|.|.+|++.
T Consensus       218 ~~~-~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  218 SFK-FFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIP  259 (282)
T ss_pred             cee-eeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecC
Confidence            000 0011122356799999999996 78999999999999985

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.03  E-value=2.5e-08  Score=83.18  Aligned_cols=248  Identities=16%  Similarity=0.225  Sum_probs=161.4

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEee-ccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCC
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL-EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP  149 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~  149 (352)
                      +.|.+.|++...-|-..-+++.+.|.++++|...+... -.-.+ ..-..+++++.+.+....|+.|-..|++.-+.+..
T Consensus        21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q-~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~se   99 (404)
T KOG1409|consen   21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ-YWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSE   99 (404)
T ss_pred             cCchhhhhhheeccCCCCeEEccccceeeeEEeccccc-cCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhh
Confidence            34667788887888778899999999999996543221 11111 12246788899999888999999999988876532


Q ss_pred             -CCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCC-CceeEeeeeccCCCCcccEEEEEEcCCCC
Q 018675          150 -GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD-NWHCVQTISESNNGHSSTIWALSFNAKGD  227 (352)
Q Consensus       150 -~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~l~~~~~~~  227 (352)
                       .+.+...+....|...+..+-|+.....+++.+.|..+. |........ ..+.   +.       ....++.+.-.  
T Consensus       100 dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~---~~-------~~~t~~~~d~~--  166 (404)
T KOG1409|consen  100 DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYN---FE-------TPASALQFDAL--  166 (404)
T ss_pred             hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceE---ee-------ccCCCCceeeE--
Confidence             122233455668999999999988888899999998764 432221111 0000   00       01111111111  


Q ss_pred             EEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCC-ceEEecCCCCeEEEEEccCCccccCcc
Q 018675          228 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPS  306 (352)
Q Consensus       228 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~s~~~d~~v~~~~~~~~~~~~~~~  306 (352)
                      +...|...|.|..-.+....         ...+.++. .|...++++.|++. +.+.+|..|..+.+|+....       
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~---------~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~-------  229 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNG---------CQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR-------  229 (404)
T ss_pred             EEEecccccceEEEEEeecC---------CceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCC-------
Confidence            34455556665555332111         11223332 47788999999985 58999999999999976431       


Q ss_pred             cceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          307 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       307 ~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                       +.+..++.+|...|..+...+.-++ +.|+++||.|-+|++..+
T Consensus       230 -~g~~~el~gh~~kV~~l~~~~~t~~-l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  230 -KGTAYELQGHNDKVQALSYAQHTRQ-LISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             -cceeeeeccchhhhhhhhhhhhhee-eeeccCCCeEEEEeccce
Confidence             2334567899999999988776655 669999999999998654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.01  E-value=5.6e-09  Score=95.09  Aligned_cols=297  Identities=18%  Similarity=0.265  Sum_probs=172.0

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC---CEEEEEeCCCcE
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG---KLLATASFDATT   98 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~d~~i   98 (352)
                      +.+..+..+|.      +.-+|.++.-|-+. -++..+.   ++..-+.....-.|-.+.|+|..   ..+++-+. ..-
T Consensus        25 ~~~~a~si~p~------grdi~lAsr~gl~i-~dld~p~---~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~-qka   93 (1081)
T KOG0309|consen   25 GGFNAVSINPS------GRDIVLASRQGLYI-IDLDDPF---TPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN-QKA   93 (1081)
T ss_pred             Ccccceeeccc------cchhhhhhhcCeEE-EeccCCC---CCceeeeccCcchhcceecccCCCCceeEEecCc-chh
Confidence            45667777885      33466666655543 3444332   11111111122356677888754   34444443 444


Q ss_pred             EEEEccC-CceeeeEeeccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC
Q 018675           99 CIWEDVG-GDYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD  176 (352)
Q Consensus        99 ~i~~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  176 (352)
                      .+|+... .....-..+.+|..+|+.+-|+|.. ..+++++-|-.+..||++....  ++.....-......+.|+.-..
T Consensus        94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p  171 (1081)
T KOG0309|consen   94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP  171 (1081)
T ss_pred             hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCc
Confidence            4676532 2222334567999999999999854 5799999999999999976542  2333333334567788987666


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEcCCccccccCCCCc
Q 018675          177 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGADITRMQSGDGYA  255 (352)
Q Consensus       177 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  255 (352)
                      .+.+.+..+.|.+|+.+....    .+..+    ++|...|++++|+.- ...+.+++.||+|++||-.....       
T Consensus       172 ~vlasshg~~i~vwd~r~gs~----pl~s~----K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~-------  236 (1081)
T KOG0309|consen  172 NVLASSHGNDIFVWDLRKGST----PLCSL----KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT-------  236 (1081)
T ss_pred             chhhhccCCceEEEeccCCCc----ceEEe----cccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc-------
Confidence            677778888999998754321    12222    368888999998764 45688999999999998542211       


Q ss_pred             cceeeEEeecccCcceEEEEecC--CceEEecCCCCe-EEEEEccCCccc-cCcccceeeecccccCcceeEEEecCC--
Q 018675          256 SWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDS-VQFFVESKDDLI-DGPSYKMLLKKEKAHDMDVNSVQWSPG--  329 (352)
Q Consensus       256 ~~~~~~~~~~~~~~~i~~~~~~~--~~~~~s~~~d~~-v~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~~~~sp~--  329 (352)
                      .|+...    .....++...+.|  +++++.-...+. +.++.....++. +.......+..+.||...|..+-|--.  
T Consensus       237 e~~~~v----tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e  312 (1081)
T KOG0309|consen  237 ESKRTV----TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKE  312 (1081)
T ss_pred             ccceec----cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccc
Confidence            011100    0112233333333  344444433333 223322211111 111122345567899888876666321  


Q ss_pred             ------C-cceEEEecCCCeEEEEeecc
Q 018675          330 ------E-RRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       330 ------~-~~~l~s~~~Dg~i~iw~~~~  350 (352)
                            . ..-|+|-|.|.++|+|-+.+
T Consensus       313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  313 CDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ccCCCCccceeEEEeecCCceEeeeccH
Confidence                  1 13478999999999998764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=4.7e-07  Score=83.05  Aligned_cols=155  Identities=19%  Similarity=0.226  Sum_probs=94.3

Q ss_pred             eecceEEEEECCCCCEEEEEeCC---CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEE-EeeCCC--cEEEEe
Q 018675           73 HTRTVRSCAWSPSGKLLATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDK--SVWIWE  146 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d---~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~--~v~vwd  146 (352)
                      +...+....|+|||+.|+..+.+   ..|.+|+..+++...+.   ...+.+....|+|+|+.|+ +.+.++  .|.++|
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence            45678899999999999877654   35777887766544332   2234455789999999776 455555  577778


Q ss_pred             cCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-CCc--EEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc
Q 018675          147 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNT--IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN  223 (352)
Q Consensus       147 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~  223 (352)
                      +..+..    ..+..+........|+|+++.++..+. ++.  |.++++....   .   ..+..  .+  .......|+
T Consensus       274 ~~~~~~----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---~---~~lt~--~~--~~~~~~~~S  339 (430)
T PRK00178        274 LASRQL----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---A---ERVTF--VG--NYNARPRLS  339 (430)
T ss_pred             CCCCCe----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---E---EEeec--CC--CCccceEEC
Confidence            765432    223334444566789999987765553 444  5555543321   1   11111  01  122346799


Q ss_pred             CCCCEEEEEeC-CC--cEEEEcCC
Q 018675          224 AKGDKLVSCSD-DL--TIKIWGAD  244 (352)
Q Consensus       224 ~~~~~l~s~~~-dg--~i~iwd~~  244 (352)
                      |+|++++..+. ++  .|.++|+.
T Consensus       340 pdg~~i~~~~~~~~~~~l~~~dl~  363 (430)
T PRK00178        340 ADGKTLVMVHRQDGNFHVAAQDLQ  363 (430)
T ss_pred             CCCCEEEEEEccCCceEEEEEECC
Confidence            99999886654 33  35556653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=8.6e-07  Score=81.39  Aligned_cols=152  Identities=17%  Similarity=0.237  Sum_probs=91.2

Q ss_pred             eecceEEEEECCCCCEEEEEeCC-C--cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEE-eeCCCc--EEEEe
Q 018675           73 HTRTVRSCAWSPSGKLLATASFD-A--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT-CGRDKS--VWIWE  146 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d-~--~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~--v~vwd  146 (352)
                      +...+.+..|+|||+.|+..+.+ +  .|.++|..+++...+....   +......|+|+|+.|+. .+.++.  |.++|
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence            34577889999999998876543 3  4667777666543333332   33457899999997664 566665  66667


Q ss_pred             cCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-CCcEEEE--ecCCCCCCCceeEeeeeccCCCCcccEEEEEEc
Q 018675          147 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVW--WAEDTDSDNWHCVQTISESNNGHSSTIWALSFN  223 (352)
Q Consensus       147 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw--~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~  223 (352)
                      +..+..    ..+..+........|+|+++.++..+. ++...+|  ++....   .   ..+..  .+  .......|+
T Consensus       293 l~tg~~----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---~---~~Lt~--~g--~~~~~~~~S  358 (448)
T PRK04792        293 IATKAL----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---V---SRLTF--EG--EQNLGGSIT  358 (448)
T ss_pred             CCCCCe----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---E---EEEec--CC--CCCcCeeEC
Confidence            654432    223334444567889999997765553 4444454  443221   1   11211  11  122346899


Q ss_pred             CCCCEEEEEeC-CCcEEEE
Q 018675          224 AKGDKLVSCSD-DLTIKIW  241 (352)
Q Consensus       224 ~~~~~l~s~~~-dg~i~iw  241 (352)
                      |+|++|+..+. ++...||
T Consensus       359 pDG~~l~~~~~~~g~~~I~  377 (448)
T PRK04792        359 PDGRSMIMVNRTNGKFNIA  377 (448)
T ss_pred             CCCCEEEEEEecCCceEEE
Confidence            99998876554 4555555

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.97  E-value=2.1e-07  Score=75.24  Aligned_cols=207  Identities=11%  Similarity=0.070  Sum_probs=132.9

Q ss_pred             EEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEE-ECCCCCEEEEEeCCCcEEEEEcc
Q 018675           26 SLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCA-WSPSGKLLATASFDATTCIWEDV  104 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~-~s~~~~~l~s~~~d~~i~i~~~~  104 (352)
                      .+.|.|..- -.+...||.||+-|.+.+|...+.......-    ..|...|+-+. ..-..-.+..++.|.++++.+..
T Consensus        72 g~~F~p~s~-~~kc~~la~gG~~g~fd~~~~~tn~~h~~~c----d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~  146 (344)
T KOG4532|consen   72 GMTFTPGSF-INKCVTLADGGASGQFDLFACNTNDGHLYQC----DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVS  146 (344)
T ss_pred             cccccchHh-hccccEEEeccccceeeeecccCcccceeee----cccccchhhhhhhcccccceeeccCCcceeEEEEe
Confidence            578888532 2234679999999999999987654332111    11222111100 00012235667899999998876


Q ss_pred             CCceeeeEeeccccC--CeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEe
Q 018675          105 GGDYECVATLEGHEN--EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS  182 (352)
Q Consensus       105 ~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  182 (352)
                      .+......    |..  .+.++++++++.++++.++...|..|.+.....+............--+..|+.....+|++.
T Consensus       147 ~~s~~~~~----h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~  222 (344)
T KOG4532|consen  147 GDSNKFAV----HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF  222 (344)
T ss_pred             cCccccee----eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe
Confidence            54322222    333  378899999999999999999999999876554332212222333445778999889999999


Q ss_pred             CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC--EEEEEeCCCcEEEEcCCc
Q 018675          183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD--KLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       183 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~--~l~s~~~dg~i~iwd~~~  245 (352)
                      +||.+.|||++.-..    ...++......|.+.+..+.|++-|.  +|.-.-.-+.+.+.|++.
T Consensus       223 Qdg~~~I~DVR~~~t----pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  223 QDGTCAIYDVRNMAT----PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             cCCcEEEEEeccccc----chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            999999999875321    11223334456889999999998653  344444457888888764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=4.9e-07  Score=80.48  Aligned_cols=287  Identities=14%  Similarity=0.182  Sum_probs=165.1

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeeccee--cceEEEEECCCCCEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT--RTVRSCAWSPSGKLL   89 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l   89 (352)
                      ++++.| +|...-+.|..+|+.     .-.+|||-.--.|++||+..-.    .+  + ..|.  ..|.-.-++-|=..+
T Consensus        43 eLiQdf-e~p~ast~ik~s~DG-----qY~lAtG~YKP~ikvydlanLS----LK--F-ERhlDae~V~feiLsDD~SK~  109 (703)
T KOG2321|consen   43 ELIQDF-EMPTASTRIKVSPDG-----QYLLATGTYKPQIKVYDLANLS----LK--F-ERHLDAEVVDFEILSDDYSKS  109 (703)
T ss_pred             HHHHhc-CCccccceeEecCCC-----cEEEEecccCCceEEEEcccce----ee--e-eecccccceeEEEeccchhhh
Confidence            344444 577777889999974     2457788889999999986421    11  1 1122  233333334333333


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEEC-CCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeE
Q 018675           90 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN-ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM  168 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~  168 (352)
                      +.=-.|.+|-+... .|. .....+.   ..-+.++++ |++.+++.|+.+ .|.=+++..+..   +..+......+++
T Consensus       110 v~L~~DR~IefHak-~G~-hy~~RIP---~~GRDm~y~~~scDly~~gsg~-evYRlNLEqGrf---L~P~~~~~~~lN~  180 (703)
T KOG2321|consen  110 VFLQNDRTIEFHAK-YGR-HYRTRIP---KFGRDMKYHKPSCDLYLVGSGS-EVYRLNLEQGRF---LNPFETDSGELNV  180 (703)
T ss_pred             eEeecCceeeehhh-cCe-eeeeecC---cCCccccccCCCccEEEeecCc-ceEEEEcccccc---cccccccccccee
Confidence            33345555544321 110 0000111   111344444 455665555543 344455655543   3334445578899


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeee--ccCCCC-----cccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          169 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS--ESNNGH-----SSTIWALSFNAKGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~--~~~~~h-----~~~i~~l~~~~~~~~l~s~~~dg~i~iw  241 (352)
                      +..++...+|++|+.+|.+.+||.+....     ..++.  ...+.|     ...|+++.|+.+|-.++.|+.+|.+.||
T Consensus       181 v~in~~hgLla~Gt~~g~VEfwDpR~ksr-----v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iy  255 (703)
T KOG2321|consen  181 VSINEEHGLLACGTEDGVVEFWDPRDKSR-----VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIY  255 (703)
T ss_pred             eeecCccceEEecccCceEEEecchhhhh-----heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEE
Confidence            99999988999999999999998665321     11221  111122     2359999999999999999999999999


Q ss_pred             cCCccccccCCCCccceeeEEeecccCcceEEEEecCC--ceEEecCCCCeEEEEEccCCccccCcccceeeecccccCc
Q 018675          242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM  319 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~  319 (352)
                      |++..+.....           .....-+|..+.|.+.  +-.+.......+++|+...+..        ...  ..-..
T Consensus       256 DLRa~~pl~~k-----------dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~--------~as--iEpt~  314 (703)
T KOG2321|consen  256 DLRASKPLLVK-----------DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP--------MAS--IEPTS  314 (703)
T ss_pred             EcccCCceeec-----------ccCCccceeeecccccCCCceEEecchHHhhhcccccCCc--------eee--ccccC
Confidence            99754321110           0112345667777654  2223333455788886532111        111  11234


Q ss_pred             ceeEEEecCCCcceEEEecCCCeEEEEe
Q 018675          320 DVNSVQWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       320 ~i~~~~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      .++++++-|++. ++.++-+++.+..|=
T Consensus       315 ~lND~C~~p~sG-m~f~Ane~~~m~~yy  341 (703)
T KOG2321|consen  315 DLNDFCFVPGSG-MFFTANESSKMHTYY  341 (703)
T ss_pred             CcCceeeecCCc-eEEEecCCCcceeEE
Confidence            589999999875 777888888776553

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=8.4e-07  Score=81.39  Aligned_cols=195  Identities=15%  Similarity=0.151  Sum_probs=113.3

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCC---CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE-E
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGD---KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT-A   92 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D---~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~   92 (352)
                      +..|.+.+.+..|+|+      ++.|+..+.+   ..|.+|++.++..    ....  ...+.+...+|+|||+.|+. .
T Consensus       194 l~~~~~~~~~p~wSpD------G~~la~~s~~~~~~~l~~~~l~~g~~----~~l~--~~~g~~~~~~~SpDG~~la~~~  261 (430)
T PRK00178        194 LLQSREPILSPRWSPD------GKRIAYVSFEQKRPRIFVQNLDTGRR----EQIT--NFEGLNGAPAWSPDGSKLAFVL  261 (430)
T ss_pred             EecCCCceeeeeECCC------CCEEEEEEcCCCCCEEEEEECCCCCE----EEcc--CCCCCcCCeEECCCCCEEEEEE
Confidence            4456678889999997      4667665543   3577788876532    1111  11234556899999998874 4


Q ss_pred             eCCC--cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-CC--cEEEEecCCCCeeEEEEEeecCccCee
Q 018675           93 SFDA--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DK--SVWIWEVMPGNEFECVSVLQGHAQDVK  167 (352)
Q Consensus        93 ~~d~--~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~h~~~v~  167 (352)
                      ..++  .|.++|..++...   .+..+........|+|+|+.++..+. ++  .|.++++..+.. ..+ ...+  ....
T Consensus       262 ~~~g~~~Iy~~d~~~~~~~---~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~l-t~~~--~~~~  334 (430)
T PRK00178        262 SKDGNPEIYVMDLASRQLS---RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERV-TFVG--NYNA  334 (430)
T ss_pred             ccCCCceEEEEECCCCCeE---EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEe-ecCC--CCcc
Confidence            4455  4666777665432   23344555667899999998765553 33  466666654432 211 1112  2234


Q ss_pred             EEEEcCCCCEEEEEeCC-C--cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC-CCcEEEE
Q 018675          168 MVQWHPTMDVLFSCSYD-N--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-DLTIKIW  241 (352)
Q Consensus       168 ~~~~~~~~~~l~s~~~d-~--~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~-dg~i~iw  241 (352)
                      ...|+|+++.++..+.+ +  .|.++++....   .   ..+...  ..   .....|+|+|+.++-.+. +|.-++|
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~---~---~~lt~~--~~---~~~p~~spdg~~i~~~~~~~g~~~l~  401 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS---V---RILTDT--SL---DESPSVAPNGTMLIYATRQQGRGVLM  401 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECCCCC---E---EEccCC--CC---CCCceECCCCCEEEEEEecCCceEEE
Confidence            56899999988766543 3  46667654321   1   112111  11   113579999998876553 3444444

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.94  E-value=2.2e-07  Score=82.79  Aligned_cols=150  Identities=15%  Similarity=0.205  Sum_probs=101.9

Q ss_pred             CCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccc-cCCeeEEEEC------C--------------CCcEEEEeeCCCc
Q 018675           83 SPSGKLLATASFDATTCIWEDVGGDYECVATLEGH-ENEVKSVSWN------A--------------SGTLLATCGRDKS  141 (352)
Q Consensus        83 s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h-~~~v~~v~~~------~--------------~~~~l~s~~~d~~  141 (352)
                      .|.+.++|....||.+++|+...++...-.....| .+.-.+..|.      |              +...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            34567889999999999999766543222221122 1222333331      1              2236777888899


Q ss_pred             EEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEE
Q 018675          142 VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS  221 (352)
Q Consensus       142 v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~  221 (352)
                      |.++++..++. .....-.+|..+|.++.++.+-.++.+++.|..+..|+.....         +..........+.+++
T Consensus        82 v~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~---------~~~~~~~~~~~~~sl~  151 (541)
T KOG4547|consen   82 VLLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV---------IIRIWKEQKPLVSSLC  151 (541)
T ss_pred             EEEEEecCCeE-EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce---------eeeeeccCCCccceEE
Confidence            99999875542 2222334688999999999888899999999999999654321         1111223456788999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEcCC
Q 018675          222 FNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       222 ~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      ++||+..+++++  +.|++||++
T Consensus       152 is~D~~~l~~as--~~ik~~~~~  172 (541)
T KOG4547|consen  152 ISPDGKILLTAS--RQIKVLDIE  172 (541)
T ss_pred             EcCCCCEEEecc--ceEEEEEcc
Confidence            999999998886  579999875

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=6.2e-07  Score=81.71  Aligned_cols=161  Identities=11%  Similarity=0.063  Sum_probs=88.2

Q ss_pred             cceEEEEECCCCCEEE---EEeCCCc--EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-----CCcEEE
Q 018675           75 RTVRSCAWSPSGKLLA---TASFDAT--TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-----DKSVWI  144 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~---s~~~d~~--i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----d~~v~v  144 (352)
                      ..+.+-.|+|||+.++   +...++.  |.+.+..+++...+..+   .+......|+|||+.|+..+.     |..+..
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            3456678999997532   3333444  55556666654444433   334556899999988776543     223444


Q ss_pred             EecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEe-CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc
Q 018675          145 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN  223 (352)
Q Consensus       145 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~  223 (352)
                      |++..+...........+........|+|+++.|+..+ .++...+|.+.......  ....+.    .+...+....|+
T Consensus       262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~lt----~~~~~~~~p~wS  335 (428)
T PRK01029        262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ--SPRLLT----KKYRNSSCPAWS  335 (428)
T ss_pred             eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc--ceEEec----cCCCCccceeEC
Confidence            66543211111222222222345678999999777655 46666666432110000  011121    122345678899


Q ss_pred             CCCCEEEEEeCC---CcEEEEcCC
Q 018675          224 AKGDKLVSCSDD---LTIKIWGAD  244 (352)
Q Consensus       224 ~~~~~l~s~~~d---g~i~iwd~~  244 (352)
                      |||+.|+..+.+   ..|.+||+.
T Consensus       336 PDG~~Laf~~~~~g~~~I~v~dl~  359 (428)
T PRK01029        336 PDGKKIAFCSVIKGVRQICVYDLA  359 (428)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECC
Confidence            999988866543   357777764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=1.6e-07  Score=85.70  Aligned_cols=293  Identities=16%  Similarity=0.270  Sum_probs=176.6

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeee-----------eeeeecceecceEEEEECCCCCE
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNC-----------KAVLEEMHTRTVRSCAWSPSGKL   88 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~-----------~~~~~~~h~~~v~~~~~s~~~~~   88 (352)
                      ......|+.|+...      .++|.||.||.+++-.+++...-.+.           .+.+ ..|+..|.-+.|+.+.+.
T Consensus        13 nnvkL~c~~WNke~------gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~~QK   85 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKES------GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNENNQK   85 (1189)
T ss_pred             CCceEEEEEEcccC------CeEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEecccccc
Confidence            34567899999875      58999999999999987654311111           1122 469999999999999999


Q ss_pred             EEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeE
Q 018675           89 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM  168 (352)
Q Consensus        89 l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~  168 (352)
                      |-+...+|.|.+|-.-.+.+..-..-.-..+.|.+++|+.+|..++-.-.||.|.|=.+...+.+.  ..+++  .....
T Consensus        86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg--KeLkg--~~l~h  161 (1189)
T KOG2041|consen   86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG--KELKG--QLLAH  161 (1189)
T ss_pred             ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc--hhcch--heccc
Confidence            999999999999976554432111111234568899999999999888888888775543222111  11221  12346


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCCCCCc--eeEeeeeccCCCCcccEEEEEE--------cCCCCEEEEEeCCCcE
Q 018675          169 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW--HCVQTISESNNGHSSTIWALSF--------NAKGDKLVSCSDDLTI  238 (352)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~l~~--------~~~~~~l~s~~~dg~i  238 (352)
                      +.|++|...++.+-..|.+.+||.........  .|.-............|..+.|        -|+...|+.|-..|++
T Consensus       162 v~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~  241 (1189)
T KOG2041|consen  162 VLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRM  241 (1189)
T ss_pred             eeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCcee
Confidence            78999988877787889999997654322211  1111111111112223555555        3577889999999988


Q ss_pred             EEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCC---------eEEEEEccCCccccCcccc
Q 018675          239 KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADD---------SVQFFVESKDDLIDGPSYK  308 (352)
Q Consensus       239 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~---------~v~~~~~~~~~~~~~~~~~  308 (352)
                      .|---..    ...      + ..+.  ..-.+....|+++| .++.++.+.         .+.++.+-          .
T Consensus       242 QiMR~eN----D~~------P-vv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~----------G  298 (1189)
T KOG2041|consen  242 QIMRSEN----DPE------P-VVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY----------G  298 (1189)
T ss_pred             hhhhhcC----CCC------C-eEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc----------h
Confidence            7762110    000      0 0010  11235556788877 444444432         23333221          1


Q ss_pred             eeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          309 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       309 ~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      .+...++.-...|++++|-..|-+ +| -..|+.|.+=++
T Consensus       299 ~i~gtlkvpg~~It~lsWEg~gLr-iA-~AvdsfiyfanI  336 (1189)
T KOG2041|consen  299 HIVGTLKVPGSCITGLSWEGTGLR-IA-IAVDSFIYFANI  336 (1189)
T ss_pred             hheEEEecCCceeeeeEEcCCceE-EE-EEecceEEEEee
Confidence            233344445678999999766654 33 444777765433

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.90  E-value=5.6e-09  Score=95.05  Aligned_cols=213  Identities=19%  Similarity=0.332  Sum_probs=137.5

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      .+-||...|+.+.|+|..     +..+|||+.|-.+..|++.+....   .+....-| .....+.|+--...++..+..
T Consensus       109 ~lhghsraitd~n~~~q~-----pdVlatcsvdt~vh~wd~rSp~~p---~ys~~~w~-s~asqVkwnyk~p~vlasshg  179 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQH-----PDVLATCSVDTYVHAWDMRSPHRP---FYSTSSWR-SAASQVKWNYKDPNVLASSHG  179 (1081)
T ss_pred             EEecCccceeccccCCCC-----CcceeeccccccceeeeccCCCcc---eeeeeccc-ccCceeeecccCcchhhhccC
Confidence            456999999999999964     578999999999999998765421   11111112 345678888754444445566


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCC-CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT  174 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (352)
                      +.+.+||..-+. .++..+++|...|+.+.|+.. -..+.+++.|++|+.||-..... +... ...-..+++...+.|-
T Consensus       180 ~~i~vwd~r~gs-~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~-e~~~-~vtt~~piw~~r~~Pf  256 (1081)
T KOG0309|consen  180 NDIFVWDLRKGS-TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT-ESKR-TVTTNFPIWRGRYLPF  256 (1081)
T ss_pred             CceEEEeccCCC-cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc-ccce-eccccCcceecccccc
Confidence            789999986554 467788899999999998763 34688999999999999643211 1111 1122345666666665


Q ss_pred             CC--EEEEEeCCCcEEEEecCCCCCC-----CceeEeeeeccCCCCcccEEEEEEcCCC----------CEEEEEeCCCc
Q 018675          175 MD--VLFSCSYDNTIKVWWAEDTDSD-----NWHCVQTISESNNGHSSTIWALSFNAKG----------DKLVSCSDDLT  237 (352)
Q Consensus       175 ~~--~l~s~~~d~~i~iw~~~~~~~~-----~~~~~~~~~~~~~~h~~~i~~l~~~~~~----------~~l~s~~~dg~  237 (352)
                      +.  ++.---.++.+.+++.++.+..     ....+++    ..||...|....|...+          -.|+|-+.|..
T Consensus       257 g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~----F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~  332 (1081)
T KOG0309|consen  257 GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHT----FVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT  332 (1081)
T ss_pred             CceeEeccccCCeeeeeccccchhhhhccccCCcceee----ecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence            43  2222223345666655443221     1111222    34788877766664432          25999999999


Q ss_pred             EEEEcCC
Q 018675          238 IKIWGAD  244 (352)
Q Consensus       238 i~iwd~~  244 (352)
                      +|+|-+.
T Consensus       333 lrlWpI~  339 (1081)
T KOG0309|consen  333 LRLWPID  339 (1081)
T ss_pred             eEeeecc
Confidence            9999653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.90  E-value=8e-06  Score=80.82  Aligned_cols=244  Identities=18%  Similarity=0.278  Sum_probs=147.8

Q ss_pred             ecceEEEEECCCCCEEEEEeCCCcEEEE----EccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecC-
Q 018675           74 TRTVRSCAWSPSGKLLATASFDATTCIW----EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM-  148 (352)
Q Consensus        74 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~----~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~-  148 (352)
                      ...|.++.+-++...++.+..+|.|.+.    +......+.+..+   +.+|.+.+||||+++|+....++++.+-+-. 
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            3678999999999999999999999988    5545444444444   5689999999999999999888888775321 


Q ss_pred             ---------CC--CeeEEEE---------------------------------EeecCccCeeEEEEcCCCCEEEEEeC-
Q 018675          149 ---------PG--NEFECVS---------------------------------VLQGHAQDVKMVQWHPTMDVLFSCSY-  183 (352)
Q Consensus       149 ---------~~--~~~~~~~---------------------------------~~~~h~~~v~~~~~~~~~~~l~s~~~-  183 (352)
                               ..  +..+.+.                                 .+. +...-..++|..||.++++.+. 
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence                     00  0000000                                 011 2223456889999999987764 


Q ss_pred             -----CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC---CCcEEEEcCCccccccCCCCc
Q 018675          184 -----DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD---DLTIKIWGADITRMQSGDGYA  255 (352)
Q Consensus       184 -----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~  255 (352)
                           -+.+++|+-+.       .++...+...+-+.   +|+|.|.|.++|+...   ...|.+|.-+.        +.
T Consensus       231 ~~~~~~R~iRVy~ReG-------~L~stSE~v~gLe~---~l~WrPsG~lIA~~q~~~~~~~VvFfErNG--------Lr  292 (928)
T PF04762_consen  231 PETGSRRVIRVYSREG-------ELQSTSEPVDGLEG---ALSWRPSGNLIASSQRLPDRHDVVFFERNG--------LR  292 (928)
T ss_pred             cCCCceeEEEEECCCc-------eEEeccccCCCccC---CccCCCCCCEEEEEEEcCCCcEEEEEecCC--------cE
Confidence                 25789995321       12223333333332   5799999999998764   34577774321        11


Q ss_pred             cceeeEEee-cccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeeccc-ccCcceeEEEecCCCcce
Q 018675          256 SWRHLCTIS-GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEK-AHDMDVNSVQWSPGERRL  333 (352)
Q Consensus       256 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~sp~~~~~  333 (352)
                      .  ....+. ......+..+.|+.++.+.+.-....+++|..+..       ...++++.. .....+..+.|+|....-
T Consensus       293 h--geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NY-------HWYLKqei~~~~~~~~~~~~Wdpe~p~~  363 (928)
T PF04762_consen  293 H--GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNY-------HWYLKQEIRFSSSESVNFVKWDPEKPLR  363 (928)
T ss_pred             e--eeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCC-------EEEEEEEEEccCCCCCCceEECCCCCCE
Confidence            0  001111 12345678899999885555455555999965431       112222222 223345569999865544


Q ss_pred             EEEecCCCeEEEEee
Q 018675          334 LASASDDGMIKIWEL  348 (352)
Q Consensus       334 l~s~~~Dg~i~iw~~  348 (352)
                      |.....+|.+..+++
T Consensus       364 L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  364 LHVLTSNGQYEIYDF  378 (928)
T ss_pred             EEEEecCCcEEEEEE
Confidence            555665577666554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.88  E-value=1e-08  Score=59.36  Aligned_cols=38  Identities=37%  Similarity=0.817  Sum_probs=35.1

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEe
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWE   55 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~   55 (352)
                      +++.++++|.+.|++++|+|+      +.+|+|++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~------~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPD------GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETT------SSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecc------cccceeeCCCCEEEEEC
Confidence            567899999999999999997      47999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.88  E-value=6.8e-08  Score=82.19  Aligned_cols=156  Identities=19%  Similarity=0.174  Sum_probs=103.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEccCCc--eeeeEeeccccCCeeEEEECCC---CcEEEEeeCCCcEEEEecCCCC
Q 018675           77 VRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNAS---GTLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        77 v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~--~~~~~~~~~h~~~v~~v~~~~~---~~~l~s~~~d~~v~vwd~~~~~  151 (352)
                      ...+..+++++++|.+..+....+++.....  .+++.... -...-+++.|..+   ......+++...+.+|....+ 
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-  142 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-  142 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence            3445678888999988888877677654432  22222221 1223334444333   333334455556666655432 


Q ss_pred             eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                         +.....||-.-+..++++||+++++++..|..|++-+.....        .+.....||+..|..++.-++ +.|+|
T Consensus       143 ---~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f--------~IesfclGH~eFVS~isl~~~-~~LlS  210 (390)
T KOG3914|consen  143 ---RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF--------VIESFCLGHKEFVSTISLTDN-YLLLS  210 (390)
T ss_pred             ---CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc--------chhhhccccHhheeeeeeccC-ceeee
Confidence               234567899999999999999999999999999987544321        223344589999999998765 45899


Q ss_pred             EeCCCcEEEEcCCcc
Q 018675          232 CSDDLTIKIWGADIT  246 (352)
Q Consensus       232 ~~~dg~i~iwd~~~~  246 (352)
                      +|.|++|++||....
T Consensus       211 ~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  211 GSGDKTLRLWDITSG  225 (390)
T ss_pred             cCCCCcEEEEecccC
Confidence            999999999998643

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=8e-08  Score=87.53  Aligned_cols=243  Identities=14%  Similarity=0.232  Sum_probs=148.3

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEccCCc-------------eeeeEeeccccCCeeEEEECCCCcEEEEeeCCCc
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-------------YECVATLEGHENEVKSVSWNASGTLLATCGRDKS  141 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~-------------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~  141 (352)
                      ....+++|+....++|.|+.||.+++....+..             ...-+++.||++.|..+.|+.+.+.|-|...+|-
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            457899999999999999999999998653321             1112567899999999999998888999999999


Q ss_pred             EEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEE
Q 018675          142 VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS  221 (352)
Q Consensus       142 v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~  221 (352)
                      |.||-+-.+.-.+. ..-....+-|.+++|..+|..+.....||.|.+=.+...  +.|.  +.+.    +  .....+.
T Consensus        95 IiVWmlykgsW~EE-MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN--RIwg--KeLk----g--~~l~hv~  163 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEE-MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN--RIWG--KELK----G--QLLAHVL  163 (1189)
T ss_pred             EEEEeeecccHHHH-HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc--eecc--hhcc----h--hecccee
Confidence            99999865542221 111123345778999999988888888888766433221  1111  1121    1  1233578


Q ss_pred             EcCCCCEEEEEeCCCcEEEEcCCccccccCCCCcc-ceeeEEeecccCcceEEEEecC--------C-ceEEecCCCCeE
Q 018675          222 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYAS-WRHLCTISGYHDRTIFSVHWSR--------E-GIIASGAADDSV  291 (352)
Q Consensus       222 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~--------~-~~~~s~~~d~~v  291 (352)
                      |++|.+.++-+-..|...++|.... +........ ......++ .....+-.++|..        + ..++.+-.+|.+
T Consensus       164 ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s-~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~  241 (1189)
T KOG2041|consen  164 WSEDLEQALFKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFS-NFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRM  241 (1189)
T ss_pred             ecccHHHHHhhhcCCcEEEeccccc-HHHhhhhceEEeeeeeec-CCCccccceeeccCccccCCCCCCEEEEEEcCcee
Confidence            9999988888888999999985421 100000000 00001111 1111233333332        2 256666666666


Q ss_pred             EEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCC
Q 018675          292 QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG  341 (352)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg  341 (352)
                      ++.-...     .+   .......+  ..|..+.|+|+|. +||.+|.|.
T Consensus       242 QiMR~eN-----D~---~Pvv~dtg--m~~vgakWnh~G~-vLAvcG~~~  280 (1189)
T KOG2041|consen  242 QIMRSEN-----DP---EPVVVDTG--MKIVGAKWNHNGA-VLAVCGNDS  280 (1189)
T ss_pred             hhhhhcC-----CC---CCeEEecc--cEeecceecCCCc-EEEEccCcc
Confidence            6542111     11   11111222  6789999999986 778888663

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=1.6e-06  Score=79.03  Aligned_cols=203  Identities=15%  Similarity=0.093  Sum_probs=107.3

Q ss_pred             ccceEEEEEccCCCCCCCcc-EEEEeeCCCeEEEE--ecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC-CC
Q 018675           21 TDRVWSLAWKPTAGVDGVAP-VFASCSGDKTVRIW--EQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF-DA   96 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~-~l~s~s~D~~v~~w--~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~   96 (352)
                      ...+.+-.|+|+..    .. ++++...++.-.||  ++.++..    .... . ..+.....+|||||+.|+..+. ++
T Consensus       184 ~~~~~sP~wSPDG~----~~~~~y~S~~~g~~~I~~~~l~~g~~----~~lt-~-~~g~~~~p~wSPDG~~Laf~s~~~g  253 (428)
T PRK01029        184 HSLSITPTWMHIGS----GFPYLYVSYKLGVPKIFLGSLENPAG----KKIL-A-LQGNQLMPTFSPRKKLLAFISDRYG  253 (428)
T ss_pred             CCCcccceEccCCC----ceEEEEEEccCCCceEEEEECCCCCc----eEee-c-CCCCccceEECCCCCEEEEEECCCC
Confidence            34456678999731    11 22344445554455  6654432    1111 1 2334456789999998886553 23


Q ss_pred             ----cEEEEEccCCc-eeeeEeeccccCCeeEEEECCCCcEEEEee-CCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           97 ----TTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        97 ----~i~i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                          .+.+|+...+. .........+.+.....+|+|+|+.|+..+ .++...+|.+...........+..+...+....
T Consensus       254 ~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~  333 (428)
T PRK01029        254 NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA  333 (428)
T ss_pred             CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCcccee
Confidence                23335544321 111122222223446789999999877655 466666665421110011222333334566789


Q ss_pred             EcCCCCEEEEEeCC---CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE-eCC--CcEEEEcC
Q 018675          171 WHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDD--LTIKIWGA  243 (352)
Q Consensus       171 ~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~-~~d--g~i~iwd~  243 (352)
                      |+|+++.++..+.+   ..|.+|++.....      ..+..    ....+....|+|+|+.|+-. ..+  ..|.++++
T Consensus       334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~------~~Lt~----~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        334 WSPDGKKIAFCSVIKGVRQICVYDLATGRD------YQLTT----SPENKESPSWAIDSLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             ECCCCCEEEEEEcCCCCcEEEEEECCCCCe------EEccC----CCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            99999988766543   3578887654321      11211    11235568899999987743 333  34555554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=2e-06  Score=79.03  Aligned_cols=188  Identities=15%  Similarity=0.167  Sum_probs=103.9

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeC-CC--eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE-EeCC
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSG-DK--TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT-ASFD   95 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~-D~--~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~d   95 (352)
                      +...+.+..|+|+      ++.++-.+. ++  .|.+|++.+++.    .... . ........+|+|||+.|+. .+.+
T Consensus       216 ~~~~~~~p~wSPD------G~~La~~s~~~g~~~L~~~dl~tg~~----~~lt-~-~~g~~~~~~wSPDG~~La~~~~~~  283 (448)
T PRK04792        216 SPEPLMSPAWSPD------GRKLAYVSFENRKAEIFVQDIYTQVR----EKVT-S-FPGINGAPRFSPDGKKLALVLSKD  283 (448)
T ss_pred             CCCcccCceECCC------CCEEEEEEecCCCcEEEEEECCCCCe----EEec-C-CCCCcCCeeECCCCCEEEEEEeCC
Confidence            3456678899997      456665543 33  466667765532    1111 1 1223456799999998764 4556


Q ss_pred             Cc--EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-CCc--EEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           96 AT--TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DKS--VWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        96 ~~--i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~--v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      +.  |.+++..+++..   .+..+........|+|+++.|+..+. ++.  |.++|+..+.. ..+ ...++  ......
T Consensus       284 g~~~Iy~~dl~tg~~~---~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~L-t~~g~--~~~~~~  356 (448)
T PRK04792        284 GQPEIYVVDIATKALT---RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRL-TFEGE--QNLGGS  356 (448)
T ss_pred             CCeEEEEEECCCCCeE---ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEE-ecCCC--CCcCee
Confidence            65  555566555432   33344455677899999998765543 444  55556544432 211 12222  234568


Q ss_pred             EcCCCCEEEEEeC-CCcEEEE--ecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe-CCCc
Q 018675          171 WHPTMDVLFSCSY-DNTIKVW--WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLT  237 (352)
Q Consensus       171 ~~~~~~~l~s~~~-d~~i~iw--~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~-~dg~  237 (352)
                      |+|+++.++..+. ++...||  ++....   .   ..+...  .   ......|+|+|+.|+..+ .+|.
T Consensus       357 ~SpDG~~l~~~~~~~g~~~I~~~dl~~g~---~---~~lt~~--~---~d~~ps~spdG~~I~~~~~~~g~  416 (448)
T PRK04792        357 ITPDGRSMIMVNRTNGKFNIARQDLETGA---M---QVLTST--R---LDESPSVAPNGTMVIYSTTYQGK  416 (448)
T ss_pred             ECCCCCEEEEEEecCCceEEEEEECCCCC---e---EEccCC--C---CCCCceECCCCCEEEEEEecCCc
Confidence            9999998776554 4444554  433221   1   111111  0   111347999999877554 4444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.81  E-value=1.9e-07  Score=79.47  Aligned_cols=156  Identities=15%  Similarity=0.211  Sum_probs=92.5

Q ss_pred             eEEEECCCCcEEEEeeCCCcEEEEecCCCCe-eEEEEEeecCccCeeEEEEcCCCCEEEEE---eCCCcEEEEecCCCCC
Q 018675          122 KSVSWNASGTLLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPTMDVLFSC---SYDNTIKVWWAEDTDS  197 (352)
Q Consensus       122 ~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~~d~~i~iw~~~~~~~  197 (352)
                      ..+..++++.+++.+..+....+++...... .+.+.... -...-+.+.+-.+...+..+   +....+.+|....   
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~---  141 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS---  141 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc---
Confidence            3444567777777776666665666543332 12221111 11122334443333333333   3334445553221   


Q ss_pred             CCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEec
Q 018675          198 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS  277 (352)
Q Consensus       198 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  277 (352)
                        +.+.     ...||.+-+..|+++||+++++++..|..||+--..-                         .+     
T Consensus       142 --~~~~-----~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-------------------------~f-----  184 (390)
T KOG3914|consen  142 --GRCE-----PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-------------------------TF-----  184 (390)
T ss_pred             --cCcc-----hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-------------------------cc-----
Confidence              1111     2238999999999999999999999999998763210                         00     


Q ss_pred             CCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       278 ~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                                                     .+-.-..||...|..++.-++  +.|+|+|.|++|++||+.++
T Consensus       185 -------------------------------~IesfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  185 -------------------------------VIESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             -------------------------------chhhhccccHhheeeeeeccC--ceeeecCCCCcEEEEecccC
Confidence                                           000113478888999999875  35789999999999998764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.79  E-value=8.4e-05  Score=65.09  Aligned_cols=267  Identities=10%  Similarity=0.005  Sum_probs=132.1

Q ss_pred             CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC----------CCcEEEEEccCCceeeeEeecc--
Q 018675           49 KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF----------DATTCIWEDVGGDYECVATLEG--  116 (352)
Q Consensus        49 ~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----------d~~i~i~~~~~~~~~~~~~~~~--  116 (352)
                      ++|.+.|..+.+....    +.... .+ ..+ ++|||+.|.++..          +..|.+||..+.+.  +..+.-  
T Consensus        27 ~~v~ViD~~~~~v~g~----i~~G~-~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~   97 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGM----TDGGF-LP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPE   97 (352)
T ss_pred             ceEEEEECCCCEEEEE----EEccC-CC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCC
Confidence            7899999877543222    21111 11 223 8999998776655          68899999877643  333321  


Q ss_pred             --c---cCCeeEEEECCCCcEEEEee--CCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEE
Q 018675          117 --H---ENEVKSVSWNASGTLLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV  189 (352)
Q Consensus       117 --h---~~~v~~v~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~i  189 (352)
                        +   ......+.++|+|++|+...  .+..|.+.|+...+....+..    .....-...+++..+  ..+.|+....
T Consensus        98 ~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e~~~~--~~~~Dg~~~~  171 (352)
T TIGR02658        98 GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTANDTFF--MHCRDGSLAK  171 (352)
T ss_pred             CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecCCccE--EEeecCceEE
Confidence              0   11233788899999888665  378999999876654333222    011111111111111  2223444433


Q ss_pred             EecCCCCCCCceeEeeeec--c--CCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEe-
Q 018675          190 WWAEDTDSDNWHCVQTISE--S--NNGHSSTIWALSFNA-KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTI-  263 (352)
Q Consensus       190 w~~~~~~~~~~~~~~~~~~--~--~~~h~~~i~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-  263 (352)
                      ..+..... .  ...+...  .  ......+    .|.+ +|.++..... |+|.+.|+........   ..|.....- 
T Consensus       172 v~~d~~g~-~--~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~---~~~~~~~~~~  240 (352)
T TIGR02658       172 VGYGTKGN-P--KIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL---PAIEAFTEAE  240 (352)
T ss_pred             EEecCCCc-e--EEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceec---ceeeeccccc
Confidence            32222111 0  0111100  0  0000112    3345 7777766665 9999998532111100   001000000 


Q ss_pred             --ecccCcceEEEEecCCc-e-EE-ecCC--------CCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCC
Q 018675          264 --SGYHDRTIFSVHWSREG-I-IA-SGAA--------DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE  330 (352)
Q Consensus       264 --~~~~~~~i~~~~~~~~~-~-~~-s~~~--------d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~  330 (352)
                        .++.......+++++++ . ++ +-..        .+.+.+++...        .+.+.....+  ..+..++++||+
T Consensus       241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t--------~kvi~~i~vG--~~~~~iavS~Dg  310 (352)
T TIGR02658       241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT--------GKRLRKIELG--HEIDSINVSQDA  310 (352)
T ss_pred             cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC--------CeEEEEEeCC--CceeeEEECCCC
Confidence              01111122235666543 2 22 2111        13455554322        1222222223  478999999999


Q ss_pred             c-ceEEEecCCCeEEEEeeccC
Q 018675          331 R-RLLASASDDGMIKIWELANT  351 (352)
Q Consensus       331 ~-~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      + .++++...++.|.|.|+...
T Consensus       311 kp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       311 KPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             CeEEEEeCCCCCcEEEEECcCC
Confidence            8 77777778999999998653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.79  E-value=2.4e-05  Score=78.84  Aligned_cols=211  Identities=14%  Similarity=0.107  Sum_probs=117.8

Q ss_pred             EEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeee---------ecceecceEEEEECCCCCEEEEE-eCC
Q 018675           26 SLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL---------EEMHTRTVRSCAWSPSGKLLATA-SFD   95 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~---------~~~h~~~v~~~~~s~~~~~l~s~-~~d   95 (352)
                      .+++.+..     +.++++-+..+.|++|+...... ......-         ....-.....+++++++..|.++ ...
T Consensus       572 gvavd~~~-----g~lyVaDs~n~rI~v~d~~G~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n  645 (1057)
T PLN02919        572 KLAIDLLN-----NRLFISDSNHNRIVVTDLDGNFI-VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN  645 (1057)
T ss_pred             eEEEECCC-----CeEEEEECCCCeEEEEeCCCCEE-EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence            45555532     35777777889999998764321 1111000         00011234778899988765544 445


Q ss_pred             CcEEEEEccCCceeeeEee-------ccc-------cCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEE---
Q 018675           96 ATTCIWEDVGGDYECVATL-------EGH-------ENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVS---  157 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~-------~~h-------~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---  157 (352)
                      +.|+.+|..++....+..-       .+-       -...+.++++| ++.++++.+.++.|++||...+... ...   
T Consensus       646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G  724 (1057)
T PLN02919        646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDG  724 (1057)
T ss_pred             ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCC
Confidence            6788887655432211110       000       11345789999 5667778888899999997543211 000   


Q ss_pred             ---EeecC------ccCeeEEEEcCCCC-EEEEEeCCCcEEEEecCCCCCCCceeE---------eeeecc----CCCCc
Q 018675          158 ---VLQGH------AQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCV---------QTISES----NNGHS  214 (352)
Q Consensus       158 ---~~~~h------~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~---------~~~~~~----~~~h~  214 (352)
                         ...++      -.....++++|++. ++++-+.++.|++|+....... ....         ..+...    ....-
T Consensus       725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-~~~gg~~~~~~~l~~fG~~dG~g~~~~l  803 (1057)
T PLN02919        725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR-LLAGGDPTFSDNLFKFGDHDGVGSEVLL  803 (1057)
T ss_pred             ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-EEEecccccCcccccccCCCCchhhhhc
Confidence               00000      12345688999987 4556667789999986542110 0000         000000    00011


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          215 STIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       215 ~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      .....++++++|..+++-..+++|++||.+
T Consensus       804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~  833 (1057)
T PLN02919        804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPA  833 (1057)
T ss_pred             cCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence            223578899999988888889999999864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.78  E-value=3.4e-08  Score=57.18  Aligned_cols=38  Identities=32%  Similarity=0.897  Sum_probs=35.5

Q ss_pred             eeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEe
Q 018675          109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE  146 (352)
Q Consensus       109 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd  146 (352)
                      +++.++.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45678899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.2e-07  Score=81.85  Aligned_cols=214  Identities=14%  Similarity=0.108  Sum_probs=137.8

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeee--ecceecceEEEEECCCCCEEEEEeC-CC
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL--EEMHTRTVRSCAWSPSGKLLATASF-DA   96 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~-d~   96 (352)
                      |.+.|+-+....       .++++++|-||.++.|....-..    ...+  ...|...|.+++.+-+|..+.|++. |.
T Consensus         8 hrd~i~hv~~tk-------a~fiiqASlDGh~KFWkKs~isG----vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dh   76 (558)
T KOG0882|consen    8 HRDVITHVFPTK-------AKFIIQASLDGHKKFWKKSRISG----VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDH   76 (558)
T ss_pred             ccceeeeEeeeh-------hheEEeeecchhhhhcCCCCccc----eeehhhhHHHHHHHHhhhccccceeEeeccCccc
Confidence            788888665444       37999999999999997654111    1111  1346778889999999999999777 99


Q ss_pred             cEEEEEccCCceeeeEeeccccCCeeEEEECCCC---cEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675           97 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASG---TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus        97 ~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                      .++++|..+-+......+.--.+.+..+ .++..   ...++.-.++.+.++|-.... .+....-.-|..+|.++.+.|
T Consensus        77 s~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~-~q~~~fkklH~sPV~~i~y~q  154 (558)
T KOG0882|consen   77 SVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDF-CQDGYFKKLHFSPVKKIRYNQ  154 (558)
T ss_pred             ceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCc-CccceecccccCceEEEEeec
Confidence            9999997654432122222222222222 12221   233444567899999854322 122222345889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCC-----CCCCceeE-eeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          174 TMDVLFSCSYDNTIKVWWAEDT-----DSDNWHCV-QTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       174 ~~~~l~s~~~d~~i~iw~~~~~-----~~~~~~~~-~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      .+..+++....|.|..|.....     ....|..- .+..-..........++.|+|++..+.+-+.|..|+++.++..
T Consensus       155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG  233 (558)
T KOG0882|consen  155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG  233 (558)
T ss_pred             cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence            9999999999999999966531     00111100 0000001112345678999999999999999999999987643

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.77  E-value=3.3e-05  Score=63.62  Aligned_cols=203  Identities=14%  Similarity=0.215  Sum_probs=120.6

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeecc--
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG--  116 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~--  116 (352)
                      |++||. -+|..|.|-...+...-...+..+.+...-.=+-++||||+.+||.+...|+|+++|..+...   ..+..  
T Consensus         9 Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l---f~I~p~~   84 (282)
T PF15492_consen    9 GKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL---FVIPPAM   84 (282)
T ss_pred             CcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee---EEcCccc
Confidence            455555 478888877654432211111122222222346789999999999999999999999765432   12111  


Q ss_pred             -----ccCCeeEEEECCC------CcEEEEeeCCCcEEEEecCC--CCeeEEEEEee---cCccCeeEEEEcCCCCEEEE
Q 018675          117 -----HENEVKSVSWNAS------GTLLATCGRDKSVWIWEVMP--GNEFECVSVLQ---GHAQDVKMVQWHPTMDVLFS  180 (352)
Q Consensus       117 -----h~~~v~~v~~~~~------~~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s  180 (352)
                           -..+|..+.|-+-      ...|+.-..+|.++-+-+..  .+.+...+.+.   .+...|.++.++|..++|+.
T Consensus        85 ~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlV  164 (282)
T PF15492_consen   85 SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLV  164 (282)
T ss_pred             ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEE
Confidence                 1245666666331      22466667777777666532  22333333332   24568999999999888877


Q ss_pred             EeCC-C----------cEEEEecCCCCC---------CCc------eeEeeee-----ccCCCCcccEEEEEEcCCCCEE
Q 018675          181 CSYD-N----------TIKVWWAEDTDS---------DNW------HCVQTIS-----ESNNGHSSTIWALSFNAKGDKL  229 (352)
Q Consensus       181 ~~~d-~----------~i~iw~~~~~~~---------~~~------~~~~~~~-----~~~~~h~~~i~~l~~~~~~~~l  229 (352)
                      |+.. .          -+..|.+.+...         +..      .....+.     ......+..|..|..||||..|
T Consensus       165 gG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~L  244 (282)
T PF15492_consen  165 GGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLL  244 (282)
T ss_pred             eccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEE
Confidence            6532 1          345564432110         000      0000010     0112246789999999999999


Q ss_pred             EEEeCCCcEEEEcCCc
Q 018675          230 VSCSDDLTIKIWGADI  245 (352)
Q Consensus       230 ~s~~~dg~i~iwd~~~  245 (352)
                      |+...+|.|.+|++..
T Consensus       245 a~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  245 ACIHFSGSLSLWEIPS  260 (282)
T ss_pred             EEEEcCCeEEEEecCc
Confidence            9999999999998753

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.73  E-value=2.1e-07  Score=76.85  Aligned_cols=249  Identities=18%  Similarity=0.293  Sum_probs=137.5

Q ss_pred             ecceEEEEECCCCCEEEEEeCCCcEEEEEccCCc---eeeeEeecccc------------CCeeEEEECCCC--cEEEEe
Q 018675           74 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD---YECVATLEGHE------------NEVKSVSWNASG--TLLATC  136 (352)
Q Consensus        74 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~---~~~~~~~~~h~------------~~v~~v~~~~~~--~~l~s~  136 (352)
                      ...|+++.|...|.+|++|...|.+.+|......   ......+++|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            3578999999999999999988999998654322   22223344553            357888886543  357778


Q ss_pred             eCCCcEEEEecCCCCeeEEEEEeecCccCeeE----EEEcCCCCEEEEEe-CCCcEEEEecCCCCCCCceeEeeeeccCC
Q 018675          137 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM----VQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNN  211 (352)
Q Consensus       137 ~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~----~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  211 (352)
                      +.|++|++|.+.... .+.+..-. -+..+..    .-.++..-.+--.+ .|..|...              .-....+
T Consensus       106 tNdktiKlWKiyekn-lk~va~nn-ls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~--------------p~rvyaN  169 (460)
T COG5170         106 TNDKTIKLWKIYEKN-LKVVAENN-LSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK--------------PCRVYAN  169 (460)
T ss_pred             cCCceeeeeeeeccc-chhhhccc-cccccccccCCCcCCHHHhhcccccccceEEEec--------------cceeccc
Confidence            899999999985432 11111000 0000000    00000000000001 11111111              1111335


Q ss_pred             CCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecc----cCcceEEEEecCC--ceEEec
Q 018675          212 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY----HDRTIFSVHWSRE--GIIASG  285 (352)
Q Consensus       212 ~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~--~~~~s~  285 (352)
                      +|..-|+++.|+.|.+.++++ .|=+|.+|.++......        .+..+.+.    ....|.+..++|.  ..++-.
T Consensus       170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sF--------nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS  240 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSF--------NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS  240 (460)
T ss_pred             cceeEeeeeeecCchheeeec-cceeeeeccccccCCce--------EEEeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence            789999999999999888876 46789999875432110        01111111    1223555666664  356677


Q ss_pred             CCCCeEEEEEccCCccccCcccceeee-c------ccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          286 AADDSVQFFVESKDDLIDGPSYKMLLK-K------EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       286 ~~d~~v~~~~~~~~~~~~~~~~~~~~~-~------~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ++.|.|++.+.....+.+.+..-...+ .      ..+-...|.++.|+|.|+ ++++-. =-+++|||+.
T Consensus       241 sSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRd-yltvkiwDvn  309 (460)
T COG5170         241 SSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRD-YLTVKIWDVN  309 (460)
T ss_pred             cCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEec-cceEEEEecc
Confidence            788899988665433333222110000 0      012235788999999987 454444 3589999985

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=4.4e-05  Score=68.17  Aligned_cols=280  Identities=13%  Similarity=0.225  Sum_probs=154.1

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE-----eC---
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA-----SF---   94 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-----~~---   94 (352)
                      ..+..++++.      +.+ +..+.++.++|++.......++.       ....++++.|+|-|.+|.+=     -.   
T Consensus        36 ~~~v~~~S~~------G~l-fA~~~~~~v~i~~~~~~~~~lt~-------~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~  101 (566)
T KOG2315|consen   36 PCNVFAYSNN------GRL-FAYSDNQVVKVFEIATLKVVLCV-------ELKKTYDLLFSPKGNYLLTWEPWAIYGPKN  101 (566)
T ss_pred             cceeEEEcCC------CcE-EEEEcCCeEEEEEccCCcEEEEe-------ccceeeeeeecccccccccccccccccCCC
Confidence            3445566664      344 44567889999988765422221       12268899999999888752     11   


Q ss_pred             --CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEc
Q 018675           95 --DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH  172 (352)
Q Consensus        95 --d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~  172 (352)
                        ...+.+|+..++  .....++.....-++..|+.|..+.+-- -.+.+.+|++...+  ...+.+  |...++.+.++
T Consensus       102 ~~~pn~~v~~vet~--~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~--~~~~kl--~~~~i~~f~lS  174 (566)
T KOG2315|consen  102 ASNPNVLVYNVETG--VQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFK--TIQHKL--SVSGITMLSLS  174 (566)
T ss_pred             CCCCceeeeeeccc--eehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCcc--ceeeee--eccceeeEEec
Confidence              234668887662  2233333222233788898876543221 22568899875432  222333  56678888888


Q ss_pred             CCC--CEEEE-----EeCCCcEEEEecCCCCCC----------------Cce-------e------------------Ee
Q 018675          173 PTM--DVLFS-----CSYDNTIKVWWAEDTDSD----------------NWH-------C------------------VQ  204 (352)
Q Consensus       173 ~~~--~~l~s-----~~~d~~i~iw~~~~~~~~----------------~~~-------~------------------~~  204 (352)
                      |..  ..+++     .+.=+.++||........                .|.       +                  ++
T Consensus       175 pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Ly  254 (566)
T KOG2315|consen  175 PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLY  254 (566)
T ss_pred             CCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEE
Confidence            863  23332     234457888854411000                000       0                  00


Q ss_pred             eeecc------CCCCcccEEEEEEcCCCCEEEEEe--CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEe
Q 018675          205 TISES------NNGHSSTIWALSFNAKGDKLVSCS--DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW  276 (352)
Q Consensus       205 ~~~~~------~~~h~~~i~~l~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  276 (352)
                      -+...      .-.-.++|.++.|+|+++.++.+-  .=..+.|||++-.-.            .   ..-+++=..+-|
T Consensus       255 ll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v------------~---df~egpRN~~~f  319 (566)
T KOG2315|consen  255 LLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV------------F---DFPEGPRNTAFF  319 (566)
T ss_pred             EEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe------------E---eCCCCCccceEE
Confidence            00000      001257899999999998777653  345788898753211            0   111223334556


Q ss_pred             cCCc-eE-EecCC--CCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecC-----CCeEEEEe
Q 018675          277 SREG-II-ASGAA--DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD-----DGMIKIWE  347 (352)
Q Consensus       277 ~~~~-~~-~s~~~--d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~-----Dg~i~iw~  347 (352)
                      +|.+ ++ ++|-.  .|.+.+|+....         .++.....  ..-+-++|+|||+.++.+...     |+.++||.
T Consensus       320 np~g~ii~lAGFGNL~G~mEvwDv~n~---------K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  320 NPHGNIILLAGFGNLPGDMEVWDVPNR---------KLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             CCCCCEEEEeecCCCCCceEEEeccch---------hhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence            7755 33 33333  478999976431         12222222  235668899999865543333     78899998


Q ss_pred             ec
Q 018675          348 LA  349 (352)
Q Consensus       348 ~~  349 (352)
                      ..
T Consensus       389 yt  390 (566)
T KOG2315|consen  389 YT  390 (566)
T ss_pred             ec
Confidence            74

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=1.4e-05  Score=71.29  Aligned_cols=197  Identities=17%  Similarity=0.320  Sum_probs=119.0

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEe-----eCCCeEEEEecCCCce--eeeeeeeeecceecceEEEEECCCCCEE-E-
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASC-----SGDKTVRIWEQSASSR--FWNCKAVLEEMHTRTVRSCAWSPSGKLL-A-   90 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~-----s~D~~v~~w~~~~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~-   90 (352)
                      |...|+...++|..    ...++|+-     |.=..||||.......  ....+..++   .+. ....|++-|+-| + 
T Consensus       164 ~~~~i~~f~lSpgp----~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk---adk-vqm~WN~~gt~LLvL  235 (566)
T KOG2315|consen  164 SVSGITMLSLSPGP----EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK---ADK-VQMKWNKLGTALLVL  235 (566)
T ss_pred             eccceeeEEecCCC----CCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc---cce-eEEEeccCCceEEEE
Confidence            77889999999862    13455543     4446899998652211  111112221   122 345678766532 2 


Q ss_pred             -EEeCCC---------cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEee--CCCcEEEEecCCCCeeEEEEE
Q 018675           91 -TASFDA---------TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG--RDKSVWIWEVMPGNEFECVSV  158 (352)
Q Consensus        91 -s~~~d~---------~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~  158 (352)
                       +..-|.         ++.+.... +. .+...+. ..++|.++.|+|++..|+.+-  .=-++.++|++- .   ++..
T Consensus       236 astdVDktn~SYYGEq~Lyll~t~-g~-s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~---~v~d  308 (566)
T KOG2315|consen  236 ASTDVDKTNASYYGEQTLYLLATQ-GE-SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-K---PVFD  308 (566)
T ss_pred             EEEeecCCCccccccceEEEEEec-Cc-eEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-C---EeEe
Confidence             232333         34444333 22 2232332 368999999999998776654  335788898752 2   2332


Q ss_pred             eecCccCeeEEEEcCCCCEEEEEeCC---CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC-
Q 018675          159 LQGHAQDVKMVQWHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-  234 (352)
Q Consensus       159 ~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~-  234 (352)
                      +  -..+=+++-|+|.+++++.++.+   |.+.+||+.+.     +++..+.    .  ..-.-..|+|||++++|++. 
T Consensus       309 f--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-----K~i~~~~----a--~~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  309 F--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-----KLIAKFK----A--ANTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             C--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch-----hhccccc----c--CCceEEEEcCCCcEEEEEecc
Confidence            2  23455678899999999888875   68999987652     2333222    1  22334789999999998875 


Q ss_pred             -----CCcEEEEcCC
Q 018675          235 -----DLTIKIWGAD  244 (352)
Q Consensus       235 -----dg~i~iwd~~  244 (352)
                           |+-++||+..
T Consensus       376 PRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  376 PRLRVDNGIKIWHYT  390 (566)
T ss_pred             ccEEecCCeEEEEec
Confidence                 6889999754

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.63  E-value=2.1e-07  Score=77.89  Aligned_cols=168  Identities=14%  Similarity=0.145  Sum_probs=114.1

Q ss_pred             EEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCC---ceeeeEeeccccC
Q 018675           43 ASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG---DYECVATLEGHEN  119 (352)
Q Consensus        43 ~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~---~~~~~~~~~~h~~  119 (352)
                      ++.|.+..+-+=+.+++-.     +-  ..-...|.++.|...++++..|.-+|.|..+|....   ...+...+ -|.+
T Consensus       228 fs~G~sqqv~L~nvetg~~-----qs--f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~S  299 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-----QS--FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDS  299 (425)
T ss_pred             ecccccceeEEEEeecccc-----cc--cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCc
Confidence            5556677777777766521     11  113457888899988999999999999999997542   22334444 4889


Q ss_pred             CeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE--EcCCCCEEEEEeCCCcEEEEecCCCC
Q 018675          120 EVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ--WHPTMDVLFSCSYDNTIKVWWAEDTD  196 (352)
Q Consensus       120 ~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~s~~~d~~i~iw~~~~~~  196 (352)
                      .|+++..-. +++.|++.+.+|+|++||++..+-.+.+..+.+|...-.-+-  ..+.+..+++++.|...+||.+... 
T Consensus       300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g-  378 (425)
T KOG2695|consen  300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG-  378 (425)
T ss_pred             chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC-
Confidence            999987755 678899999999999999865443334777888876554443  3466778899999999999965443 


Q ss_pred             CCCceeEeeeeccCCCCcccEEEEEEc
Q 018675          197 SDNWHCVQTISESNNGHSSTIWALSFN  223 (352)
Q Consensus       197 ~~~~~~~~~~~~~~~~h~~~i~~l~~~  223 (352)
                          +.+.++......-...+++++|.
T Consensus       379 ----hLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  379 ----HLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ----ceeeccCCCCccccccccceehh
Confidence                22333332223333456666664

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.63  E-value=1.3e-06  Score=70.49  Aligned_cols=160  Identities=15%  Similarity=0.246  Sum_probs=94.2

Q ss_pred             eecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-----CCcEEEEec
Q 018675           73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-----DKSVWIWEV  147 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----d~~v~vwd~  147 (352)
                      |+.+-.+-+.+--+..++++..|+.+.+++.+. ..........-...-.+.++...++.+.++.-     -+..+.|++
T Consensus        88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~  166 (319)
T KOG4714|consen   88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTL  166 (319)
T ss_pred             cCCCCCcccccccCCceEecCCCceEEEEechH-HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecc
Confidence            333333334444567899999999999987432 11100000000111112223334555544421     123456666


Q ss_pred             CCCCeeEEEEEeecCccCeeEEEEcCCC-CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC-
Q 018675          148 MPGNEFECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-  225 (352)
Q Consensus       148 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-  225 (352)
                      ++.+....   ....-..+.+++-+|.. ..+++|+.||.+-+||.+....        +.....+|..+|+.+-|+|. 
T Consensus       167 ~p~~t~~~---~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------p~S~l~ahk~~i~eV~FHpk~  235 (319)
T KOG4714|consen  167 DPIKTLIP---SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------PVSLLKAHKAEIWEVHFHPKN  235 (319)
T ss_pred             cccccccc---cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------hHHHHHHhhhhhhheeccCCC
Confidence            54332111   11112348888888864 4677888999999998765411        11223479999999999995 


Q ss_pred             CCEEEEEeCCCcEEEEcCC
Q 018675          226 GDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       226 ~~~l~s~~~dg~i~iwd~~  244 (352)
                      +..|+++++||.+-.||..
T Consensus       236 p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  236 PEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             chheeEecCCCcEEEEcCC
Confidence            6789999999999999975

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.59  E-value=7.7e-07  Score=71.76  Aligned_cols=147  Identities=15%  Similarity=0.187  Sum_probs=88.7

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC-----CCcEEEEEccCCceeeeEe
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF-----DATTCIWEDVGGDYECVAT  113 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-----d~~i~i~~~~~~~~~~~~~  113 (352)
                      +..++++..||.+-+.+.+...   .........|.+.......+ .+..+.++..     -+..++|+....+......
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~---~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~  176 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDL---ALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK  176 (319)
T ss_pred             CCceEecCCCceEEEEechHHH---hhhhhcccccccccccceee-cccEEecCCcceEeeccceeeecccccccccccc
Confidence            3568999999999998765321   11111111122211111111 3344433321     1234455433221111111


Q ss_pred             eccccCCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC-CCEEEEEeCCCcEEEEe
Q 018675          114 LEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWW  191 (352)
Q Consensus       114 ~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~  191 (352)
                        .-...|.+++-+|..+ ++++|+.||.+.+||.+..  ..+...++.|..+++.+-|||. ...|+++++||.+-.|+
T Consensus       177 --~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  177 --KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             --cccccchhhhCCcccccEEEEecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence              1123488898888654 5777889999999998754  2345667889999999999995 56799999999999997


Q ss_pred             cC
Q 018675          192 AE  193 (352)
Q Consensus       192 ~~  193 (352)
                      ..
T Consensus       253 as  254 (319)
T KOG4714|consen  253 AS  254 (319)
T ss_pred             CC
Confidence            54

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=6e-07  Score=79.70  Aligned_cols=175  Identities=16%  Similarity=0.326  Sum_probs=109.3

Q ss_pred             eEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC----eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCc
Q 018675          111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN----EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT  186 (352)
Q Consensus       111 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~  186 (352)
                      +..+.+|+..|+.+.--.+.+-+++++.|++|++|.+++..    ...|..++..|..+|..+.|-.+.+.+++  -|+.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence            45667999999888665566779999999999999987542    23467788999999999999888776654  6899


Q ss_pred             EEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE-EeCCCcEEEEcCCccccccCCCCccceeeEEee-
Q 018675          187 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS-CSDDLTIKIWGADITRMQSGDGYASWRHLCTIS-  264 (352)
Q Consensus       187 i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-  264 (352)
                      |.+||.-....-    .+-......+-...|.++. +-+...+++ |+...+||++|.+...         |.-.-+.. 
T Consensus       806 iHlWDPFigr~L----aq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce---------~~~E~kVcn  871 (1034)
T KOG4190|consen  806 IHLWDPFIGRLL----AQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCE---------WTCELKVCN  871 (1034)
T ss_pred             ceeecccccchh----HhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeeccccc---------ceeeEEecc
Confidence            999975332110    0000011112223344432 113444444 4788999999976321         21111111 


Q ss_pred             -cccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCcc
Q 018675          265 -GYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDL  301 (352)
Q Consensus       265 -~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~  301 (352)
                       +.......+++..+.| .++++-.+|.+.+.+...+.+
T Consensus       872 a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v  910 (1034)
T KOG4190|consen  872 APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV  910 (1034)
T ss_pred             CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence             1122345566666654 688888888888876655433

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.53  E-value=4e-06  Score=69.44  Aligned_cols=216  Identities=18%  Similarity=0.287  Sum_probs=131.3

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeee-ee--cc------------eecceEEEEECC
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAV-LE--EM------------HTRTVRSCAWSP   84 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~-~~--~~------------h~~~v~~~~~s~   84 (352)
                      ..+.|+++.|...      |.+++||...|.|-++..+...   -|.+. +.  ..            -...|+.+.|-.
T Consensus        25 ead~ItaVefd~t------g~YlatGDkgGRVvlfer~~s~---~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~   95 (460)
T COG5170          25 EADKITAVEFDET------GLYLATGDKGGRVVLFEREKSY---GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD   95 (460)
T ss_pred             ccceeeEEEeccc------cceEeecCCCceEEEeeccccc---ccchhhhhhhcccccchhhhhhccHHHHhhheeeec
Confidence            4578899988765      5799998878999999754321   11110 00  00            123567777754


Q ss_pred             CC--CEEEEEeCCCcEEEEEccCCcee-----------------------------------eeE------eeccccCCe
Q 018675           85 SG--KLLATASFDATTCIWEDVGGDYE-----------------------------------CVA------TLEGHENEV  121 (352)
Q Consensus        85 ~~--~~l~s~~~d~~i~i~~~~~~~~~-----------------------------------~~~------~~~~h~~~v  121 (352)
                      ++  ..++..+.|.+|++|........                                   .+.      .-..|.-.+
T Consensus        96 ~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhi  175 (460)
T COG5170          96 DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHI  175 (460)
T ss_pred             CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEe
Confidence            43  35667789999999974321000                                   000      113567778


Q ss_pred             eEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCc-----cCeeEEEEcCCCCE-EEEEeCCCcEEEEecCCC
Q 018675          122 KSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA-----QDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDT  195 (352)
Q Consensus       122 ~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~-l~s~~~d~~i~iw~~~~~  195 (352)
                      ++++|+.+.+.++++ +|-.|.+|.+......-.+..++.|.     .-|++..|+|.... +.-.+..|.|++.|++..
T Consensus       176 NSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         176 NSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             eeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence            899999988887765 56789999975433222233334443     23678889997654 445567899999987642


Q ss_pred             CCC-CceeEe--eeec-cC---CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          196 DSD-NWHCVQ--TISE-SN---NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       196 ~~~-~~~~~~--~~~~-~~---~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      ..- ....+-  ++.. ..   .+-...|..+.|+++|+|+++-+ --+++|||.++.
T Consensus       255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~  311 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMA  311 (460)
T ss_pred             hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccc
Confidence            110 000000  0000 00   01235677889999999988765 368999998753

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.52  E-value=2.5e-05  Score=63.55  Aligned_cols=147  Identities=14%  Similarity=0.034  Sum_probs=98.4

Q ss_pred             EEEeeCCCeEEEEecCCCceeeeeeeeeecceec--ceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeE-eecccc
Q 018675           42 FASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR--TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVA-TLEGHE  118 (352)
Q Consensus        42 l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~-~~~~h~  118 (352)
                      +.-++.|.++++.+++.+..    +..   .|..  .++++++++|++++++.+....+-.|........... .+..-+
T Consensus       131 ~~i~sndht~k~~~~~~~s~----~~~---~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~  203 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSN----KFA---VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS  203 (344)
T ss_pred             eeeccCCcceeEEEEecCcc----cce---eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence            55668999999998765421    111   1332  3789999999999999998888988876543222222 333334


Q ss_pred             CCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe-eEEE-EEeecCccCeeEEEEcCCCC--EEEEEeCCCcEEEEecCC
Q 018675          119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE-FECV-SVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKVWWAED  194 (352)
Q Consensus       119 ~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~-~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~iw~~~~  194 (352)
                      ..=.+.+|+.....+|++..||++.+||++.... +..+ ..-..|...++.+.|+|-+.  +|+-.-.=+.+.+.|+++
T Consensus       204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            4556889999999999999999999999975432 1111 12234778899999997543  333332345677777655


Q ss_pred             C
Q 018675          195 T  195 (352)
Q Consensus       195 ~  195 (352)
                      .
T Consensus       284 ~  284 (344)
T KOG4532|consen  284 Y  284 (344)
T ss_pred             C
Confidence            3

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=0.00014  Score=65.05  Aligned_cols=276  Identities=18%  Similarity=0.295  Sum_probs=145.0

Q ss_pred             EEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC----------
Q 018675           26 SLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD----------   95 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----------   95 (352)
                      -+.|+|.      |.+|+|--.- -|.+|--.+-      ....+..|. .|.-+.|||..++|+|-+..          
T Consensus       215 yv~wSP~------GTYL~t~Hk~-GI~lWGG~~f------~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e  280 (698)
T KOG2314|consen  215 YVRWSPK------GTYLVTFHKQ-GIALWGGESF------DRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNE  280 (698)
T ss_pred             eEEecCC------ceEEEEEecc-ceeeecCccH------HHHHhccCC-CceeeecCCccceEEEecCCccccCcccCC
Confidence            4678886      6788887544 4668843221      122223354 58899999999999986632          


Q ss_pred             -CcEEEEEccCCceeeeEeeccccCCee-EEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675           96 -ATTCIWEDVGGDYECVATLEGHENEVK-SVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus        96 -~~i~i~~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                       ..++|||..+|..............++ -+.||.+++++|--.. .+|.|++...   +..+..-.-.-..|....|+|
T Consensus       281 ~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps---f~lld~Kslki~gIr~FswsP  356 (698)
T KOG2314|consen  281 GQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS---FMLLDKKSLKISGIRDFSWSP  356 (698)
T ss_pred             CceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc---eeeecccccCCccccCcccCC
Confidence             468999998885433222211222333 4689999999887766 5688998643   222111111235678888999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccC--------CCCcccEEEEEEcCCCCEEEEEe----------CC
Q 018675          174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN--------NGHSSTIWALSFNAKGDKLVSCS----------DD  235 (352)
Q Consensus       174 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~--------~~h~~~i~~l~~~~~~~~l~s~~----------~d  235 (352)
                      .+..||         .| .........  .-++.+..        +-|.-.=..|-|-.+|.||..--          .-
T Consensus       357 ~~~llA---------Yw-tpe~~~~pa--rvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f  424 (698)
T KOG2314|consen  357 TSNLLA---------YW-TPETNNIPA--RVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF  424 (698)
T ss_pred             CcceEE---------EE-cccccCCcc--eEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence            865443         33 222111111  00111100        11111111355667777765321          11


Q ss_pred             CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc---eEEecCC-CCeEEEEEccCCccccCcccceee
Q 018675          236 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG---IIASGAA-DDSVQFFVESKDDLIDGPSYKMLL  311 (352)
Q Consensus       236 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~s~~~-d~~v~~~~~~~~~~~~~~~~~~~~  311 (352)
                      ..+-||-++....          +...  ......+..++|.|.|   .+++|.. ..++.+|.....     .....++
T Consensus       425 ~n~eIfrireKdI----------pve~--velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~-----~~~~~lV  487 (698)
T KOG2314|consen  425 SNLEIFRIREKDI----------PVEV--VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN-----IKKPSLV  487 (698)
T ss_pred             eeEEEEEeeccCC----------Ccee--eecchheeeeeeccCCCeEEEEEccccccceeEEEeecC-----CCchhhh
Confidence            1233332211100          0000  1124567888999966   2444433 346788855421     1111222


Q ss_pred             ecccccCcceeEEEecCCCcceEEE--ecCCCeEEEEeecc
Q 018675          312 KKEKAHDMDVNSVQWSPGERRLLAS--ASDDGMIKIWELAN  350 (352)
Q Consensus       312 ~~~~~h~~~i~~~~~sp~~~~~l~s--~~~Dg~i~iw~~~~  350 (352)
                      .++..  ...+.+-|+|.|+.+++.  +|..|.+..+|+..
T Consensus       488 k~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  488 KELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             hhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            22222  347889999999865432  23467788888753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.45  E-value=0.00014  Score=73.47  Aligned_cols=163  Identities=13%  Similarity=0.118  Sum_probs=104.7

Q ss_pred             EEEEECC-CCCEEEEEeCCCcEEEEEccCCceeeeE------eeccc------cCCeeEEEECCCCc-EEEEeeCCCcEE
Q 018675           78 RSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVA------TLEGH------ENEVKSVSWNASGT-LLATCGRDKSVW  143 (352)
Q Consensus        78 ~~~~~s~-~~~~l~s~~~d~~i~i~~~~~~~~~~~~------~~~~h------~~~v~~v~~~~~~~-~l~s~~~d~~v~  143 (352)
                      ..++|+| ++.++++.+.++.|.+|+..++......      ...++      -...+.++++|++. ++++-+.++.|+
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir  765 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR  765 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence            5789999 5677788888899999987654321110      00011      12356799999987 555667789999


Q ss_pred             EEecCCCCeeEEEE----------Eeec--------CccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEee
Q 018675          144 IWEVMPGNEFECVS----------VLQG--------HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT  205 (352)
Q Consensus       144 vwd~~~~~~~~~~~----------~~~~--------h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~  205 (352)
                      +||+..+.......          .+..        .-..-..+++.+++..+++-+.++.|++|+.....      ..+
T Consensus       766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~------v~t  839 (1057)
T PLN02919        766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR------VTT  839 (1057)
T ss_pred             EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe------EEE
Confidence            99986543211000          0000        00123477889999988888889999999864321      111


Q ss_pred             eec----------cCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          206 ISE----------SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       206 ~~~----------~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      +..          ...+.-.....|+++++|+.+++-+.+++|++||++..
T Consensus       840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            110          01122235678999999999999999999999998643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.43  E-value=9.1e-05  Score=72.11  Aligned_cols=241  Identities=12%  Similarity=0.249  Sum_probs=130.6

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE  154 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  154 (352)
                      ..|.++.|-.++..++.+..+|.|.+-|..+...+.+...   ...|.+.+|+|+.+.++-...++++.+-+-    .+.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v---d~GI~aaswS~Dee~l~liT~~~tll~mT~----~f~  141 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV---DNGISAASWSPDEELLALITGRQTLLFMTK----DFE  141 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec---cCceEEEeecCCCcEEEEEeCCcEEEEEec----ccc
Confidence            5789999999999999999999999988776655544443   468999999999999998888888866431    111


Q ss_pred             EEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeee--ccCCCCcccEEEEEEcCCCCEEEEE
Q 018675          155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS--ESNNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~--~~~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                      ++....-+..      -.+.+. .+..++.+.-.-+.-...............  ... ...+.=.+++|..||+|+|+.
T Consensus       142 ~i~E~~L~~d------~~~~sk-~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fAVs  213 (1265)
T KOG1920|consen  142 PIAEKPLDAD------DERKSK-FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFAVS  213 (1265)
T ss_pred             chhccccccc------cccccc-cceecccccceeeecchhhhcccccccccccccch-hhccCCceEEEccCCcEEEEE
Confidence            1111000110      011111 222222221111100000000000000000  000 011222368999999999883


Q ss_pred             e----CC-CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEec----CCCCeEEEEEccCCcccc
Q 018675          233 S----DD-LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG----AADDSVQFFVESKDDLID  303 (352)
Q Consensus       233 ~----~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~----~~d~~v~~~~~~~~~~~~  303 (352)
                      .    .+ ..|++||-+ ..+++...            .....-.+++|-|.|-+++.    .+|+.|.++..++  +  
T Consensus       214 ~~~~~~~~RkirV~drE-g~Lns~se------------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG--L--  276 (1265)
T KOG1920|consen  214 FVESETGTRKIRVYDRE-GALNSTSE------------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG--L--  276 (1265)
T ss_pred             EEeccCCceeEEEeccc-chhhcccC------------cccccccceeecCCCCeEeeeeecCCCCcEEEEecCC--c--
Confidence            2    33 799999865 22221111            11222345778887643332    4455677775432  2  


Q ss_pred             CcccceeeecccccCcceeEEEecCCCcceEEE---ecCCCeEEEEeecc
Q 018675          304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLAS---ASDDGMIKIWELAN  350 (352)
Q Consensus       304 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s---~~~Dg~i~iw~~~~  350 (352)
                        ...........-..+|..++|+.++. +||.   ..+...|++|-+.|
T Consensus       277 --~hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  277 --RHGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             --cccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecC
Confidence              11122111222233499999999886 6665   55566699998765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=6.6e-06  Score=71.44  Aligned_cols=213  Identities=13%  Similarity=0.078  Sum_probs=132.3

Q ss_pred             ccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-CCcEEEEecCCC
Q 018675          117 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDT  195 (352)
Q Consensus       117 h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~  195 (352)
                      |...|+.+. ....+++.+++-||.++.|--......+.+..+.+|...+.+++.+.++-.+.+.+. |..++++++.+.
T Consensus         8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            555565543 334578999999999999985432333445556678778888888889888888777 999999998876


Q ss_pred             CCCCceeEeeeeccCCCCcccEEEEEEcCCC--C-EEE-EEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcce
Q 018675          196 DSDNWHCVQTISESNNGHSSTIWALSFNAKG--D-KLV-SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI  271 (352)
Q Consensus       196 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~--~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  271 (352)
                      +.-+...+.-+    .   ..+..+  ...|  . .++ +.-.+|.+.++|-....          .+.+.+...|.+++
T Consensus        87 DminmiKL~~l----P---g~a~wv--~skGd~~s~IAVs~~~sg~i~VvD~~~d~----------~q~~~fkklH~sPV  147 (558)
T KOG0882|consen   87 DMINMIKLVDL----P---GFAEWV--TSKGDKISLIAVSLFKSGKIFVVDGFGDF----------CQDGYFKKLHFSPV  147 (558)
T ss_pred             chhhhcccccC----C---CceEEe--cCCCCeeeeEEeecccCCCcEEECCcCCc----------CccceecccccCce
Confidence            54332111111    1   111111  1122  1 233 33467889999743211          12233445577778


Q ss_pred             EEEEecCCc-eEEecCCCCeEEEEEccCC------ccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEE
Q 018675          272 FSVHWSREG-IIASGAADDSVQFFVESKD------DLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK  344 (352)
Q Consensus       272 ~~~~~~~~~-~~~s~~~d~~v~~~~~~~~------~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~  344 (352)
                      ..+...+.+ .+++....|.|..|.....      .+.-......-+...........++.|+|++.+ +.+-+.|..||
T Consensus       148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR  226 (558)
T KOG0882|consen  148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVR  226 (558)
T ss_pred             EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-ccccCcccEEE
Confidence            887777755 5666666789999977631      011011111111112233467889999999975 78888999999


Q ss_pred             EEeecc
Q 018675          345 IWELAN  350 (352)
Q Consensus       345 iw~~~~  350 (352)
                      ++.+..
T Consensus       227 ~F~~Kt  232 (558)
T KOG0882|consen  227 GFVFKT  232 (558)
T ss_pred             EEEecc
Confidence            998764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.38  E-value=0.00051  Score=60.97  Aligned_cols=278  Identities=12%  Similarity=0.187  Sum_probs=148.5

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeC---------------CCeEEEEecCCCceeeeeeeeeecceecceE-EEEECCC
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSG---------------DKTVRIWEQSASSRFWNCKAVLEEMHTRTVR-SCAWSPS   85 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~---------------D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s~~   85 (352)
                      ..|..+.|+|.      +++|.|=+.               ++.+.+||..++.........-   ...... -+.|+-+
T Consensus        72 ~~V~~~~fSP~------~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~---q~~~~Wp~~k~s~~  142 (561)
T COG5354          72 PDVKYLDFSPN------EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS---QPYLGWPVLKFSID  142 (561)
T ss_pred             CCceecccCcc------cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccC---Ccccccceeeeeec
Confidence            45677888886      456666443               3358899987764322222110   111122 4678877


Q ss_pred             CCEEEEEeCCCcEEEEEccCCcee--eeEeeccccCCeeEEEECCCCc--EEEE-----eeCCCcEEEEecCCCCeeEEE
Q 018675           86 GKLLATASFDATTCIWEDVGGDYE--CVATLEGHENEVKSVSWNASGT--LLAT-----CGRDKSVWIWEVMPGNEFECV  156 (352)
Q Consensus        86 ~~~l~s~~~d~~i~i~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~--~l~s-----~~~d~~v~vwd~~~~~~~~~~  156 (352)
                      ..++|=. ....+.+++. +....  +...+.  ...|...+|+|.++  .|+.     .+.++++++|.+.........
T Consensus       143 D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk  218 (561)
T COG5354         143 DKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK  218 (561)
T ss_pred             chhhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence            7766533 2356788875 33322  122222  35688899999654  3443     467789999998754433222


Q ss_pred             EEeecCccCeeEEEEcCCCCEEEEEeC-----------CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC
Q 018675          157 SVLQGHAQDVKMVQWHPTMDVLFSCSY-----------DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK  225 (352)
Q Consensus       157 ~~~~~h~~~v~~~~~~~~~~~l~s~~~-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~  225 (352)
                      ..++.   .-..+.|++.+.++..--.           ...+.++.+...+         +... ....++|...+|.|.
T Consensus       219 ~lfk~---~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---------i~V~-~~~~~pVhdf~W~p~  285 (561)
T COG5354         219 NLFKV---SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---------IPVE-KDLKDPVHDFTWEPL  285 (561)
T ss_pred             eeEee---cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc---------ccee-ccccccceeeeeccc
Confidence            22221   2245788888886543211           1234444433211         1111 134678999999998


Q ss_pred             CCEEEEEe--CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCC---CCeEEEEEccCC
Q 018675          226 GDKLVSCS--DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAA---DDSVQFFVESKD  299 (352)
Q Consensus       226 ~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~---d~~v~~~~~~~~  299 (352)
                      ++.++.++  .+-.+.++|++..-..            .   ..++.-..+.|+|.. +++.++-   .|.+.+|+....
T Consensus       286 S~~F~vi~g~~pa~~s~~~lr~Nl~~------------~---~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         286 SSRFAVISGYMPASVSVFDLRGNLRF------------Y---FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             CCceeEEecccccceeecccccceEE------------e---cCCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence            87766544  6778888887532100            0   011111223344433 3333332   356777755331


Q ss_pred             ccccCcccceeeecccccCcceeEEEecCCCcceEEE-ec----CCCeEEEEeecc
Q 018675          300 DLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLAS-AS----DDGMIKIWELAN  350 (352)
Q Consensus       300 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s-~~----~Dg~i~iw~~~~  350 (352)
                              .++.....+  ....-+.|+||++.+... .|    .|..|+||++.-
T Consensus       351 --------f~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         351 --------FKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             --------eEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence                    122212222  234567899998754332 11    377899999863

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.36  E-value=0.0016  Score=57.62  Aligned_cols=142  Identities=15%  Similarity=0.174  Sum_probs=100.5

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCC-cEEEEEccCCceeeeEeeccc
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDA-TTCIWEDVGGDYECVATLEGH  117 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~-~i~i~~~~~~~~~~~~~~~~h  117 (352)
                      +.+++..|..+ ..+.+...+       ..+.-.|...|+-..+..++.-++.|..|| .+-+++..+++   ...+.+.
T Consensus       332 Gd~ia~VSRGk-aFi~~~~~~-------~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---~kr~e~~  400 (668)
T COG4946         332 GDYIALVSRGK-AFIMRPWDG-------YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---VKRIEKD  400 (668)
T ss_pred             CcEEEEEecCc-EEEECCCCC-------eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---EEEeeCC
Confidence            56666666543 333332211       112233566788888888888899999999 88999987764   3344556


Q ss_pred             cCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC----CCcEEEEecC
Q 018675          118 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY----DNTIKVWWAE  193 (352)
Q Consensus       118 ~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~i~iw~~~  193 (352)
                      -+.|.++..+++|+.++.+.....+.+.|+..++....   -+....-|+..+|||+.++++-+=.    ...|+++++.
T Consensus       401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i---dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~  477 (668)
T COG4946         401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI---DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD  477 (668)
T ss_pred             ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe---cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence            67899999999999999998888999999987753221   2233456889999999998885543    4578999775


Q ss_pred             C
Q 018675          194 D  194 (352)
Q Consensus       194 ~  194 (352)
                      .
T Consensus       478 ~  478 (668)
T COG4946         478 G  478 (668)
T ss_pred             C
Confidence            4

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=0.00024  Score=63.62  Aligned_cols=282  Identities=17%  Similarity=0.271  Sum_probs=148.7

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeC-----------CCeEEEEecCCCceeeeeeeeeecceecce-EEEEECCCCCEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSG-----------DKTVRIWEQSASSRFWNCKAVLEEMHTRTV-RSCAWSPSGKLLA   90 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~-----------D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v-~~~~~s~~~~~l~   90 (352)
                      .|.-++|+|..      ++|+|-|.           ...++|||+.++......... +  ....+ .-..||.|++++|
T Consensus       251 ~Vq~idfSP~E------kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~-~--~~~~~WP~frWS~DdKy~A  321 (698)
T KOG2314|consen  251 GVQFIDFSPNE------KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI-K--SPYLKWPIFRWSHDDKYFA  321 (698)
T ss_pred             CceeeecCCcc------ceEEEecCCccccCcccCCCceEEEEEccccchhcceecc-C--CCccccceEEeccCCceeE
Confidence            46678899964      67888753           168999999887432111110 0  00111 2357999999998


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCC-----CcEEEEecCCCCeeEEEEEeecCccC
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-----KSVWIWEVMPGNEFECVSVLQGHAQD  165 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~h~~~  165 (352)
                      -... .+|.||+...  ..++-.-.-.-..|..+.|+|.+++||-=...     ..+.+-.++..+.   ++.-.-++-.
T Consensus       322 rm~~-~sisIyEtps--f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~---iRt~nlfnVs  395 (698)
T KOG2314|consen  322 RMTG-NSISIYETPS--FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE---IRTKNLFNVS  395 (698)
T ss_pred             Eecc-ceEEEEecCc--eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce---eeeccceeee
Confidence            7666 5688887432  22221111123578899999988776632111     1333444433322   1111111111


Q ss_pred             eeEEEEcCCCCEEEEEe----------CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC-
Q 018675          166 VKMVQWHPTMDVLFSCS----------YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-  234 (352)
Q Consensus       166 v~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~-  234 (352)
                      =+.+-|..++.+|..--          .=..+.|+.+...+-         ..........|...+|-|.|+.++.-+. 
T Consensus       396 DckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI---------pve~velke~vi~FaWEP~gdkF~vi~g~  466 (698)
T KOG2314|consen  396 DCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI---------PVEVVELKESVIAFAWEPHGDKFAVISGN  466 (698)
T ss_pred             ccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC---------CceeeecchheeeeeeccCCCeEEEEEcc
Confidence            12355667777765321          111234443332211         0000123467888999999988775432 


Q ss_pred             --CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCce-E---EecCCCCeEEEEEccCCccccCcccc
Q 018675          235 --DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-I---ASGAADDSVQFFVESKDDLIDGPSYK  308 (352)
Q Consensus       235 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~---~s~~~d~~v~~~~~~~~~~~~~~~~~  308 (352)
                        ..++.+|..+..       ...++....+   .......+.|+|.|. +   +-++..|.+.+++....++...    
T Consensus       467 ~~k~tvsfY~~e~~-------~~~~~lVk~~---dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~----  532 (698)
T KOG2314|consen  467 TVKNTVSFYAVETN-------IKKPSLVKEL---DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDT----  532 (698)
T ss_pred             ccccceeEEEeecC-------CCchhhhhhh---cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhc----
Confidence              357888865421       1112222222   123455688999873 2   2335578888887643222111    


Q ss_pred             eeeecccccCcceeEEEecCCCcceEEEecC------CCeEEEEee
Q 018675          309 MLLKKEKAHDMDVNSVQWSPGERRLLASASD------DGMIKIWEL  348 (352)
Q Consensus       309 ~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~------Dg~i~iw~~  348 (352)
                          -...|. ..+.+.|.|.|++ ++|++.      |.--+||++
T Consensus       533 ----~~~eh~-~at~veWDPtGRY-vvT~ss~wrhk~d~GYri~tf  572 (698)
T KOG2314|consen  533 ----ASPEHF-AATEVEWDPTGRY-VVTSSSSWRHKVDNGYRIFTF  572 (698)
T ss_pred             ----cCcccc-ccccceECCCCCE-EEEeeehhhhccccceEEEEe
Confidence                112342 4678899999974 666664      333455654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.36  E-value=3.7e-06  Score=70.59  Aligned_cols=180  Identities=20%  Similarity=0.275  Sum_probs=113.0

Q ss_pred             EEECC--CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCce
Q 018675          124 VSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWH  201 (352)
Q Consensus       124 v~~~~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~  201 (352)
                      ++|+-  .+.+ ++.+.+..+-+-++..+-.    ..+. ....|.+++|...+++++.|...|.|..+|++...+.+..
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~----qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~  290 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ----QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW  290 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeecccc----cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc
Confidence            35542  2344 4556666677777654321    1122 3456888889888899999999999999999877666655


Q ss_pred             eEeeeeccCCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecc-cCcceEEEEecC-
Q 018675          202 CVQTISESNNGHSSTIWALSFNA-KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSR-  278 (352)
Q Consensus       202 ~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-  278 (352)
                      +.+.+     -|.+.|+++..=. ++++|++.+.+|+|++||++..+..-  +      .-...++ +.....-+...+ 
T Consensus       291 ~a~rl-----yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~------V~qYeGHvN~~a~l~~~v~~e  357 (425)
T KOG2695|consen  291 CAQRL-----YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK--S------VMQYEGHVNLSAYLPAHVKEE  357 (425)
T ss_pred             ceEEE-----EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc--c------eeeeecccccccccccccccc
Confidence            66655     3888899987655 78899999999999999987543310  0      0011110 111111122233 


Q ss_pred             CceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEec
Q 018675          279 EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS  327 (352)
Q Consensus       279 ~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  327 (352)
                      .+.++++++|...++|......+..+...     ....-+..|..++|.
T Consensus       358 eg~I~s~GdDcytRiWsl~~ghLl~tipf-----~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  358 EGSIFSVGDDCYTRIWSLDSGHLLCTIPF-----PYSASEVDIPSVAFD  401 (425)
T ss_pred             cceEEEccCeeEEEEEecccCceeeccCC-----CCccccccccceehh
Confidence            56889999999999998765444332211     112233456667764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.31  E-value=0.00057  Score=62.17  Aligned_cols=140  Identities=11%  Similarity=0.058  Sum_probs=79.8

Q ss_pred             ceEEEEECCCCCE-EEEEeCC---CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEE-EeeCC--CcEEEEecC
Q 018675           76 TVRSCAWSPSGKL-LATASFD---ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRD--KSVWIWEVM  148 (352)
Q Consensus        76 ~v~~~~~s~~~~~-l~s~~~d---~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d--~~v~vwd~~  148 (352)
                      ....-.|+|||+. ++..+.+   ..|.++|..+++...+..   ..+.+....|+|+|+.++ +.+.+  ..|.++++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            5667899999985 6655554   356677777765444432   345566788999998654 44434  456666765


Q ss_pred             CCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-CC--cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC
Q 018675          149 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK  225 (352)
Q Consensus       149 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~  225 (352)
                      .+. ...   +..+........|+|+++.++-.+. .+  .|.+.++....   .   ..+...  +.  .  ...|+|+
T Consensus       266 ~g~-~~~---LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---~---~rlt~~--g~--~--~~~~SPD  329 (419)
T PRK04043        266 TKT-LTQ---ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---V---EQVVFH--GK--N--NSSVSTY  329 (419)
T ss_pred             CCc-EEE---cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---e---EeCccC--CC--c--CceECCC
Confidence            443 222   2222222334579999987765553 34  34444443221   1   111110  11  1  2379999


Q ss_pred             CCEEEEEeC
Q 018675          226 GDKLVSCSD  234 (352)
Q Consensus       226 ~~~l~s~~~  234 (352)
                      |++++-.+.
T Consensus       330 G~~Ia~~~~  338 (419)
T PRK04043        330 KNYIVYSSR  338 (419)
T ss_pred             CCEEEEEEc
Confidence            998876654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.26  E-value=0.002  Score=54.75  Aligned_cols=208  Identities=15%  Similarity=0.189  Sum_probs=116.7

Q ss_pred             EEEEccCCCCCCCccEEEEeeCCCe-EEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC-----CcEE
Q 018675           26 SLAWKPTAGVDGVAPVFASCSGDKT-VRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD-----ATTC   99 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s~D~~-v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----~~i~   99 (352)
                      +++.+|..     +..++-+-.-|+ ..+||..++......... ..  ...--...||+||++|.+.-.|     |.|-
T Consensus         9 ~~a~~p~~-----~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-~g--RHFyGHg~fs~dG~~LytTEnd~~~g~G~Ig   80 (305)
T PF07433_consen    9 GVAAHPTR-----PEAVAFARRPGTFALVFDCRTGQLLQRLWAP-PG--RHFYGHGVFSPDGRLLYTTENDYETGRGVIG   80 (305)
T ss_pred             ceeeCCCC-----CeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-CC--CEEecCEEEcCCCCEEEEeccccCCCcEEEE
Confidence            46667743     244555544443 556777666432211110 00  1112235799999999886544     7899


Q ss_pred             EEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-------CC-----------cEEEEecCCCCeeEEEEEe--
Q 018675          100 IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-------DK-----------SVWIWEVMPGNEFECVSVL--  159 (352)
Q Consensus       100 i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-------d~-----------~v~vwd~~~~~~~~~~~~~--  159 (352)
                      +||.. ..+..+..+..|.-....+.+.|+|+.|+.+-.       .|           ++.+-|..++...+. ..+  
T Consensus        81 Vyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q-~~Lp~  158 (305)
T PF07433_consen   81 VYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ-VELPP  158 (305)
T ss_pred             EEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee-eecCc
Confidence            99976 345667777777666788999999976665521       12           222233333332221 223  


Q ss_pred             ecCccCeeEEEEcCCCCEEEEEeCCCc-------EEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE
Q 018675          160 QGHAQDVKMVQWHPTMDVLFSCSYDNT-------IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       160 ~~h~~~v~~~~~~~~~~~l~s~~~d~~-------i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                      .-|...+..+++.+++..++..-..+.       +-++.-...    .....-...........|-+|++++++.+++..
T Consensus       159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~----~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t  234 (305)
T PF07433_consen  159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA----LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT  234 (305)
T ss_pred             cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc----ceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence            336677899999988876655544332       222211110    000000001112334678899999999877654


Q ss_pred             -eCCCcEEEEcCCccc
Q 018675          233 -SDDLTIKIWGADITR  247 (352)
Q Consensus       233 -~~dg~i~iwd~~~~~  247 (352)
                       =..|.+.+||.....
T Consensus       235 sPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  235 SPRGGRVAVWDAATGR  250 (305)
T ss_pred             CCCCCEEEEEECCCCC
Confidence             467899999876443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.24  E-value=2.8e-05  Score=70.17  Aligned_cols=72  Identities=18%  Similarity=0.324  Sum_probs=60.5

Q ss_pred             eecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecC
Q 018675           73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM  148 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~  148 (352)
                      .+..|.+++++|+...++.|..||++.+||...+.    .......-.++.++|+|+|..++.|+..|.+.+||+.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~----t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV----TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCe----eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            56789999999999999999999999999976542    2222334567899999999999999999999999974

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.21  E-value=2e-05  Score=71.08  Aligned_cols=113  Identities=16%  Similarity=0.203  Sum_probs=78.6

Q ss_pred             eEEEEECC-CCCEEEEE----eCCCc----EEEEEccCCceeeeEee-ccccCCeeEEEECCCCcEEEEeeCCCcEEEEe
Q 018675           77 VRSCAWSP-SGKLLATA----SFDAT----TCIWEDVGGDYECVATL-EGHENEVKSVSWNASGTLLATCGRDKSVWIWE  146 (352)
Q Consensus        77 v~~~~~s~-~~~~l~s~----~~d~~----i~i~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd  146 (352)
                      ..++.||. ++..+.+.    +.+|.    .++|+...++.+.+... -.....|.|++++|+.+.|+.|+.||+|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            35667776 33444443    22332    34666655544443322 24667899999999999999999999999999


Q ss_pred             cCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 018675          147 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED  194 (352)
Q Consensus       147 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~  194 (352)
                      ...+-.     ......-..+.++|||++.++++|+..|.+.+||+.-
T Consensus       288 ~~~~~t-----~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  288 TTRGVT-----LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cCCCee-----eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            754421     1112233467899999999999999999999998754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.15  E-value=0.0016  Score=59.30  Aligned_cols=181  Identities=8%  Similarity=0.063  Sum_probs=97.0

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCC---CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE-EeCCC--
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGD---KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT-ASFDA--   96 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D---~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~d~--   96 (352)
                      .+....|+|+.     ...++-.+.+   ..|.++++.+++.    .... . ..+......|+|||+.|+. .+.++  
T Consensus       189 ~~~~p~wSpDG-----~~~i~y~s~~~~~~~Iyv~dl~tg~~----~~lt-~-~~g~~~~~~~SPDG~~la~~~~~~g~~  257 (419)
T PRK04043        189 LNIFPKWANKE-----QTAFYYTSYGERKPTLYKYNLYTGKK----EKIA-S-SQGMLVVSDVSKDGSKLLLTMAPKGQP  257 (419)
T ss_pred             CeEeEEECCCC-----CcEEEEEEccCCCCEEEEEECCCCcE----EEEe-c-CCCcEEeeEECCCCCEEEEEEccCCCc
Confidence            45678899973     1234433433   4566667766532    1111 1 2344566789999987664 33343  


Q ss_pred             cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-CC--cEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675           97 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DK--SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus        97 ~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                      .|.+++..++....+   ..+........|+|+|+.|+-.+. .+  .|.+.|+..+.... + ...+..    ...|+|
T Consensus       258 ~Iy~~dl~~g~~~~L---T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l-t~~g~~----~~~~SP  328 (419)
T PRK04043        258 DIYLYDTNTKTLTQI---TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-V-VFHGKN----NSSVST  328 (419)
T ss_pred             EEEEEECCCCcEEEc---ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-C-ccCCCc----CceECC
Confidence            455656655543333   222332345679999987665553 33  45566665443211 1 111211    247999


Q ss_pred             CCCEEEEEeCC---------CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC
Q 018675          174 TMDVLFSCSYD---------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD  234 (352)
Q Consensus       174 ~~~~l~s~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~  234 (352)
                      +++.++..+..         ..|.+.++....   .   ..+...  +   ......|+|||+.++-...
T Consensus       329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~---~~LT~~--~---~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---I---RRLTAN--G---VNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             CCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---e---EECCCC--C---CcCCeEECCCCCEEEEEEc
Confidence            99987765543         245555543322   1   122111  1   1224789999998765543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.10  E-value=9.2e-05  Score=69.99  Aligned_cols=147  Identities=17%  Similarity=0.257  Sum_probs=103.5

Q ss_pred             CCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC---------CCcEEEEecCCCCee
Q 018675           83 SPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR---------DKSVWIWEVMPGNEF  153 (352)
Q Consensus        83 s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---------d~~v~vwd~~~~~~~  153 (352)
                      -.+++.+.+|...|+|.+-|..+-  +.+.++.+|++.|..+.  -.|++|++||.         |.-|+|||++.-+..
T Consensus       184 R~Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral  259 (1118)
T KOG1275|consen  184 RYNNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL  259 (1118)
T ss_pred             EecCcEEEeecccceEEeecCCcC--ceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence            346789999999999999886544  56788999999987654  57889999974         457889998765543


Q ss_pred             EEEEEeecCccCeeEEEEcCCC-CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE
Q 018675          154 ECVSVLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                      .++.   -+. .-.-+.|+|.- ..+++++..|...+-+.....+......+ .    ...++.+.+++++++++.|+-|
T Consensus       260 ~PI~---~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~-v----~p~~s~i~~fDiSsn~~alafg  330 (1118)
T KOG1275|consen  260 SPIQ---FPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM-V----NPNGSGISAFDISSNGDALAFG  330 (1118)
T ss_pred             CCcc---ccc-CchhhhhcccccceEEEEecccceeeccccccCCCccceeE-E----ccCCCcceeEEecCCCceEEEe
Confidence            3332   122 22456788864 36788899999888863221111011111 1    1234568999999999999999


Q ss_pred             eCCCcEEEEc
Q 018675          233 SDDLTIKIWG  242 (352)
Q Consensus       233 ~~dg~i~iwd  242 (352)
                      ..+|.|.+|.
T Consensus       331 d~~g~v~~wa  340 (1118)
T KOG1275|consen  331 DHEGHVNLWA  340 (1118)
T ss_pred             cccCcEeeec
Confidence            9999999995

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.10  E-value=0.0028  Score=56.46  Aligned_cols=195  Identities=13%  Similarity=0.179  Sum_probs=118.4

Q ss_pred             cceEEEEEccCCCCCCCccEEEE-----eeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe---
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFAS-----CSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS---   93 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s-----~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~---   93 (352)
                      ..|....|+|..+    ++.||.     .+.++++++|.+..+..+ ..+..+    ...=..+.|.+.|++|+.=.   
T Consensus       174 ~gi~dFsisP~~n----~~~la~~tPEk~~kpa~~~i~sIp~~s~l-~tk~lf----k~~~~qLkW~~~g~~ll~l~~t~  244 (561)
T COG5354         174 VGILDFSISPEGN----HDELAYWTPEKLNKPAMVRILSIPKNSVL-VTKNLF----KVSGVQLKWQVLGKYLLVLVMTH  244 (561)
T ss_pred             cceeeEEecCCCC----CceEEEEccccCCCCcEEEEEEccCCCee-eeeeeE----eecccEEEEecCCceEEEEEEEe
Confidence            4566667777532    233332     367788999988744322 212222    11224567888888765421   


Q ss_pred             --------CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEee--CCCcEEEEecCCCCeeEEEEEeecCc
Q 018675           94 --------FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG--RDKSVWIWEVMPGNEFECVSVLQGHA  163 (352)
Q Consensus        94 --------~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~h~  163 (352)
                              ...++.|++...... .  ....-.++|..+.|.|.++.|+..+  .+-++.++|++..    ...  ....
T Consensus       245 ~ksnKsyfgesnLyl~~~~e~~i-~--V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----l~~--~~Pe  315 (561)
T COG5354         245 TKSNKSYFGESNLYLLRITERSI-P--VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----LRF--YFPE  315 (561)
T ss_pred             eecccceeccceEEEEeeccccc-c--eeccccccceeeeecccCCceeEEecccccceeecccccc----eEE--ecCC
Confidence                    123456665442221 1  1114468999999999988877665  6778889998532    111  2223


Q ss_pred             cCeeEEEEcCCCCEEEEEeCC---CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe------C
Q 018675          164 QDVKMVQWHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS------D  234 (352)
Q Consensus       164 ~~v~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~------~  234 (352)
                      +.=+.+-|+|.+++++.++.|   |.+.+|+..+    .+.+...+.    +  ....-+.|+|+++++.+..      .
T Consensus       316 ~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~----rf~~~~~~~----~--~n~s~~~wspd~qF~~~~~ts~k~~~  385 (561)
T COG5354         316 QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG----RFKVAGAFN----G--LNTSYCDWSPDGQFYDTDTTSEKLRV  385 (561)
T ss_pred             cccccccccCcccEEEEecCCccccceEEeccCC----ceEEEEEee----c--CCceEeeccCCceEEEecCCCccccc
Confidence            334567799999999988876   5788996543    234443332    1  2233468999999987764      3


Q ss_pred             CCcEEEEcCC
Q 018675          235 DLTIKIWGAD  244 (352)
Q Consensus       235 dg~i~iwd~~  244 (352)
                      |+.++|||+.
T Consensus       386 Dn~i~l~~v~  395 (561)
T COG5354         386 DNSIKLWDVY  395 (561)
T ss_pred             CcceEEEEec
Confidence            7889999875

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.09  E-value=4.5e-06  Score=75.61  Aligned_cols=205  Identities=14%  Similarity=0.213  Sum_probs=122.0

Q ss_pred             cceEEEEECCC--CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEee----CCCcEEEEec
Q 018675           75 RTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCG----RDKSVWIWEV  147 (352)
Q Consensus        75 ~~v~~~~~s~~--~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~----~d~~v~vwd~  147 (352)
                      ..+.|+++.-+  ..+++.|..+|.|.+-......-.......+|....++++|++ |.+.||+|-    .|-.+.+||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            35566666543  3578899999999987654322122334456777889999988 556677663    4568999998


Q ss_pred             CCC--CeeEEEEEeec-CccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcC
Q 018675          148 MPG--NEFECVSVLQG-HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA  224 (352)
Q Consensus       148 ~~~--~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~  224 (352)
                      ...  .+.+. ..+.+ --....+++|..+.+.+++|...+.+.++|++.....    ...      -.+..+..+..+|
T Consensus       137 ~s~ltvPke~-~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~----~~s------vnTk~vqG~tVdp  205 (783)
T KOG1008|consen  137 NSLLTVPKES-PLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS----VSS------VNTKYVQGITVDP  205 (783)
T ss_pred             ccccCCCccc-cccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh----hhh------hhhhhcccceecC
Confidence            654  11111 11222 2234557778877888999999999999987632110    011      1233456677888


Q ss_pred             -CCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC--CceEEecCCCC-eEEEEEcc
Q 018675          225 -KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADD-SVQFFVES  297 (352)
Q Consensus       225 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~s~~~d~-~v~~~~~~  297 (352)
                       .+.|+++-. ||.|.+||....   .+..+.   .+..-.......++.++|.|  .|.+++...|. +|+.++..
T Consensus       206 ~~~nY~cs~~-dg~iAiwD~~rn---ienpl~---~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  206 FSPNYFCSNS-DGDIAIWDTYRN---IENPLQ---IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCCCceeccc-cCceeeccchhh---hccHHH---HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence             777887766 999999994211   100000   00000000112367777777  45677777664 67777543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.09  E-value=0.0046  Score=52.09  Aligned_cols=196  Identities=14%  Similarity=0.176  Sum_probs=112.7

Q ss_pred             EEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEEC-CCCCEEEEEeCCCcEEEEEcc
Q 018675           26 SLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWS-PSGKLLATASFDATTCIWEDV  104 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~d~~i~i~~~~  104 (352)
                      ++.|.+.+     +.++++--..+.|..|+..+....     .+   .......+++. ++++++++ .. +.+.++|..
T Consensus         4 gp~~d~~~-----g~l~~~D~~~~~i~~~~~~~~~~~-----~~---~~~~~~G~~~~~~~g~l~v~-~~-~~~~~~d~~   68 (246)
T PF08450_consen    4 GPVWDPRD-----GRLYWVDIPGGRIYRVDPDTGEVE-----VI---DLPGPNGMAFDRPDGRLYVA-DS-GGIAVVDPD   68 (246)
T ss_dssp             EEEEETTT-----TEEEEEETTTTEEEEEETTTTEEE-----EE---ESSSEEEEEEECTTSEEEEE-ET-TCEEEEETT
T ss_pred             ceEEECCC-----CEEEEEEcCCCEEEEEECCCCeEE-----EE---ecCCCceEEEEccCCEEEEE-Ec-CceEEEecC
Confidence            46777743     467777667889999998765321     11   11225666777 67665554 44 445566877


Q ss_pred             CCceeeeEeec--c-ccCCeeEEEECCCCcEEEEeeCC--------CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675          105 GGDYECVATLE--G-HENEVKSVSWNASGTLLATCGRD--------KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus       105 ~~~~~~~~~~~--~-h~~~v~~v~~~~~~~~l~s~~~d--------~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                      +++...+....  . .....+.+++.|+|++.++....        +.+..++.  ......+   .......+.++|+|
T Consensus        69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~--~~~~~~~---~~~~~~pNGi~~s~  143 (246)
T PF08450_consen   69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP--DGKVTVV---ADGLGFPNGIAFSP  143 (246)
T ss_dssp             TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET--TSEEEEE---EEEESSEEEEEEET
T ss_pred             CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC--CCeEEEE---ecCcccccceEECC
Confidence            77666555542  2 23567899999999988776644        33555554  3322222   12234467899999


Q ss_pred             CCCEEE-EEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          174 TMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       174 ~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      +++.|+ +-+..+.|..++...... .......+.. ........-.+++..+|++.++.-..+.|.+++.
T Consensus       144 dg~~lyv~ds~~~~i~~~~~~~~~~-~~~~~~~~~~-~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p  212 (246)
T PF08450_consen  144 DGKTLYVADSFNGRIWRFDLDADGG-ELSNRRVFID-FPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP  212 (246)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTC-CEEEEEEEEE--SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred             cchheeecccccceeEEEecccccc-ceeeeeeEEE-cCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence            998765 556677777776643221 0111111111 1111123566888888888777777777777753

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=0.0002  Score=66.96  Aligned_cols=189  Identities=15%  Similarity=0.124  Sum_probs=116.9

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEE
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTC   99 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   99 (352)
                      ..+.++|++++.        .+|+=|.-+|.|.+.+.....     .  ....|...      ..+|.++++|+.||++.
T Consensus        38 ~~D~is~~av~~--------~~~~~GtH~g~v~~~~~~~~~-----~--~~~~~s~~------~~~Gey~asCS~DGkv~   96 (846)
T KOG2066|consen   38 QNDAISCCAVHD--------KFFALGTHRGAVYLTTCQGNP-----K--TNFDHSSS------ILEGEYVASCSDDGKVV   96 (846)
T ss_pred             hhhHHHHHHhhc--------ceeeeccccceEEEEecCCcc-----c--cccccccc------ccCCceEEEecCCCcEE
Confidence            346677776654        588888899999998765321     1  11123322      66899999999999999


Q ss_pred             EEEccCCceeeeEeeccccCCeeEEEECCC-----CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC
Q 018675          100 IWEDVGGDYECVATLEGHENEVKSVSWNAS-----GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT  174 (352)
Q Consensus       100 i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (352)
                      |--..+.+......   ...++.+|+++|+     ..++++||.-| +.++.-.--+....+ .+..-.++|.++.|.  
T Consensus        97 I~sl~~~~~~~~~d---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--  169 (846)
T KOG2066|consen   97 IGSLFTDDEITQYD---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--  169 (846)
T ss_pred             EeeccCCccceeEe---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--
Confidence            88666554333332   3468999999997     56899999988 766652111111111 244455789999996  


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccC--CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          175 MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN--NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       175 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      +++++-++.+| +++|+......     +..+....  ..-...-..+.|.++.++++  |...+|+|..++
T Consensus       170 g~lIAWand~G-v~vyd~~~~~~-----l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~  233 (846)
T KOG2066|consen  170 GNLIAWANDDG-VKVYDTPTRQR-----LTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK  233 (846)
T ss_pred             CcEEEEecCCC-cEEEeccccce-----eeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence            45677776666 89998655321     11111100  00112233577877766554  445578888775

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.0013  Score=62.22  Aligned_cols=206  Identities=18%  Similarity=0.227  Sum_probs=123.1

Q ss_pred             CeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccC-eeEEEEcCCCCEEEEEeCCCc-----EEEEecC
Q 018675          120 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD-VKMVQWHPTMDVLFSCSYDNT-----IKVWWAE  193 (352)
Q Consensus       120 ~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~d~~-----i~iw~~~  193 (352)
                      .+.|  |++++..++-|+.+|.|.+.+-    ..+.+..++++... +..+.......+|++-++|..     ++||+++
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~----s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNS----SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecc----cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence            4444  4688889999999998877662    23444667777766 444433334467888877754     8999987


Q ss_pred             CCCCCC-ceeEe--eeec-cCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCc
Q 018675          194 DTDSDN-WHCVQ--TISE-SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR  269 (352)
Q Consensus       194 ~~~~~~-~~~~~--~~~~-~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (352)
                      ..+.++ -.+..  .+.. .......++.+++.+.+-..+|.|=.+|.|..+.-+..+...        ...........
T Consensus       101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg--------sr~~~~~~~~~  172 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG--------SRQDYSHRGKE  172 (933)
T ss_pred             ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc--------cceeeeccCCC
Confidence            764433 34442  2222 222246788899999998889999899999999544322110        01112222345


Q ss_pred             ceEEEEecCCceE-EecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          270 TIFSVHWSREGII-ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       270 ~i~~~~~~~~~~~-~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      +|+.+.+-.++.. +=+.....|..|..+..      .  ...+....|...++|-+|++...++++++  +.-+.+|+.
T Consensus       173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr------~--p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~s  242 (933)
T KOG2114|consen  173 PITGLALRSDGKSVLFVATTEQVMLYSLSGR------T--PSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDS  242 (933)
T ss_pred             CceeeEEecCCceeEEEEecceeEEEEecCC------C--cceeeeccCCccceeeecCCCCccEEEec--CceEEEEcC
Confidence            6777666554421 12223344555544321      1  11233567888999999998655455444  445777765


Q ss_pred             c
Q 018675          349 A  349 (352)
Q Consensus       349 ~  349 (352)
                      .
T Consensus       243 d  243 (933)
T KOG2114|consen  243 D  243 (933)
T ss_pred             C
Confidence            4

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.03  E-value=0.00093  Score=62.45  Aligned_cols=51  Identities=25%  Similarity=0.591  Sum_probs=39.9

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeee
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK   66 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~   66 (352)
                      +..++.|.+.|..++|-|.+.  ....+|+.-..-.++-+|+..+++++|+..
T Consensus       102 ~~~l~~~~~~~qdl~W~~~rd--~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~  152 (1062)
T KOG1912|consen  102 INWLSHSNDSVQDLCWVPARD--DSRDVLLAIHGSSTLVLWNTDTGEKFWKYD  152 (1062)
T ss_pred             hhhhcCCCcchhheeeeeccC--cchheeEEecCCcEEEEEEccCCceeeccc
Confidence            345778999999999988542  124678888888999999999999888754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.95  E-value=0.00055  Score=64.54  Aligned_cols=107  Identities=22%  Similarity=0.381  Sum_probs=78.5

Q ss_pred             EEEccCCCCCCCccEEEEeeC----CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEE
Q 018675           27 LAWKPTAGVDGVAPVFASCSG----DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE  102 (352)
Q Consensus        27 i~~~p~~~~~~~~~~l~s~s~----D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  102 (352)
                      ++|+|.      .|+||.++-    .|+|.||-- ++.    +...+.  ..-.+++++|+|..-.|+.|-.-|.+.+|.
T Consensus        21 ~SWHPs------ePlfAVA~fS~er~GSVtIfad-tGE----Pqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~   87 (1416)
T KOG3617|consen   21 SSWHPS------EPLFAVASFSPERGGSVTIFAD-TGE----PQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQK   87 (1416)
T ss_pred             cccCCC------CceeEEEEecCCCCceEEEEec-CCC----CCcccc--cceehhhhccChHHHHHhhccccceeEEEe
Confidence            579997      478888864    488888832 221    111110  122356799999988899998889999997


Q ss_pred             ccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecC
Q 018675          103 DVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM  148 (352)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~  148 (352)
                      ..+.  +.-.....|..+|..+.|+++|..++|+..=|.+.+|...
T Consensus        88 ~~~~--e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   88 TNTT--ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cCCc--eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            5433  3334456799999999999999999999999999999864

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.95  E-value=0.012  Score=51.87  Aligned_cols=232  Identities=11%  Similarity=0.069  Sum_probs=113.7

Q ss_pred             CCCeEEEEecCCCceeeeeeeee--ecceecceEEEEECCCCCEEEEEeC--CCcEEEEEccCCceeeeEeeccccCCee
Q 018675           47 GDKTVRIWEQSASSRFWNCKAVL--EEMHTRTVRSCAWSPSGKLLATASF--DATTCIWEDVGGDYECVATLEGHENEVK  122 (352)
Q Consensus        47 ~D~~v~~w~~~~~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~--d~~i~i~~~~~~~~~~~~~~~~h~~~v~  122 (352)
                      .+..|.+||..+.+.......--  +...-..-...+++|||++|.....  +..+.+.|..+.+.  +..+.- .+...
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv--v~ei~v-p~~~~  151 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF--VRMMDV-PDCYH  151 (352)
T ss_pred             CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE--EEEEeC-CCCcE
Confidence            58999999998875433222100  0000112346789999999887663  57899998876542  333321 11111


Q ss_pred             EEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEE--EeecCccCee-EEEEcC-CCCEEEEEeCCCcEEEEecCCCCCC
Q 018675          123 SVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS--VLQGHAQDVK-MVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSD  198 (352)
Q Consensus       123 ~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~h~~~v~-~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~  198 (352)
                      -...+.... . .-+.|++.....+...+......  .+......+- .-.+.+ ++..++...+ |.|.+.|+......
T Consensus       152 vy~t~e~~~-~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~  228 (352)
T TIGR02658       152 IFPTANDTF-F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAK  228 (352)
T ss_pred             EEEecCCcc-E-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcce
Confidence            111111111 1 12334443333322211111001  1111000000 003344 7777776666 99999986543222


Q ss_pred             CceeEeeeecc---CCCCcccEEEEEEcCCCCEEEEEeC----------CCcEEEEcCCccccccCCCCccceeeEEeec
Q 018675          199 NWHCVQTISES---NNGHSSTIWALSFNAKGDKLVSCSD----------DLTIKIWGADITRMQSGDGYASWRHLCTISG  265 (352)
Q Consensus       199 ~~~~~~~~~~~---~~~h~~~i~~l~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  265 (352)
                      .......+...   ..-....+.-++++|+++.+.....          .+.|.++|....+           ....+. 
T Consensus       229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-----------vi~~i~-  296 (352)
T TIGR02658       229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK-----------RLRKIE-  296 (352)
T ss_pred             ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-----------EEEEEe-
Confidence            11111111110   0112334445899999887776431          2478888865332           222222 


Q ss_pred             ccCcceEEEEecCCce---EEecCCCCeEEEEEcc
Q 018675          266 YHDRTIFSVHWSREGI---IASGAADDSVQFFVES  297 (352)
Q Consensus       266 ~~~~~i~~~~~~~~~~---~~s~~~d~~v~~~~~~  297 (352)
                       -...+..+.+++++.   +++...++.+.+++..
T Consensus       297 -vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~  330 (352)
T TIGR02658       297 -LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE  330 (352)
T ss_pred             -CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence             234577888888764   4444467778888654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.0037  Score=59.29  Aligned_cols=196  Identities=11%  Similarity=0.164  Sum_probs=115.3

Q ss_pred             EECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCC-eeEEEECCCCcEEEEeeCCC-----cEEEEecCCC---C
Q 018675           81 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENE-VKSVSWNASGTLLATCGRDK-----SVWIWEVMPG---N  151 (352)
Q Consensus        81 ~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~d~-----~v~vwd~~~~---~  151 (352)
                      .|++++..++.|+.+|.|.+.+.   .......++.+... |.-+-.-...++|++.+.|.     .+++|++...   +
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~---s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS---SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc---cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            36788899999999999988753   22333455666665 44333333446888888775     4899998543   1


Q ss_pred             eeEEE--EEeec-----CccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcC
Q 018675          152 EFECV--SVLQG-----HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA  224 (352)
Q Consensus       152 ~~~~~--~~~~~-----h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~  224 (352)
                      +-.++  .....     .+.++.+++.+.+-..++.|=.+|.|..+.-.-.+.+..+  ..+  . ..-..+|+.|.+..
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr--~~~--~-~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSR--QDY--S-HRGKEPITGLALRS  181 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccc--eee--e-ccCCCCceeeEEec
Confidence            12233  12222     3456788999998888888888999888732111111000  011  1 12357899999988


Q ss_pred             CCCE-EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCce-EEecCCCCeEEEEEcc
Q 018675          225 KGDK-LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVES  297 (352)
Q Consensus       225 ~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~s~~~d~~v~~~~~~  297 (352)
                      ++.. +.... -..|.+|.+....           +.......++.++.+..+++... +++++ ...+.+|+..
T Consensus       182 d~~s~lFv~T-t~~V~~y~l~gr~-----------p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd  243 (933)
T KOG2114|consen  182 DGKSVLFVAT-TEQVMLYSLSGRT-----------PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSD  243 (933)
T ss_pred             CCceeEEEEe-cceeEEEEecCCC-----------cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCC
Confidence            8876 23333 3468888664111           11222234566677777776554 44443 4456677554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.91  E-value=1.1e-05  Score=75.84  Aligned_cols=201  Identities=14%  Similarity=0.230  Sum_probs=126.0

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      ++...++..|...-+|++|+-..      .+|+.|+--|.|++++..++......     .-|..+|+-+.=+.||..++
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~------~hL~vG~~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT------NHLAVGSHAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred             cccchhhhccccceeeEEeecCC------ceEEeeeccceEEEEEccCccccccc-----cccccccccccccCCcceee
Confidence            46667788899999999999864      68999999999999999887543221     34888999888888998777


Q ss_pred             EEeCCC--cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEE-EEEeecCccCee
Q 018675           91 TASFDA--TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC-VSVLQGHAQDVK  167 (352)
Q Consensus        91 s~~~d~--~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~h~~~v~  167 (352)
                      +.+.-.  -..+|+... .......+.    +-.++.|+.....-+.|.......+||++.+..... +....+.+..-+
T Consensus      1160 tsss~S~PlsaLW~~~s-~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASS-TGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred             eeccccCchHHHhcccc-ccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc
Confidence            655433  466887643 222233322    345788876544323333334578999987654322 112223333446


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccc
Q 018675          168 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR  247 (352)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  247 (352)
                      ++.|+|++.+++   .||.  +||++...     .++.+..    ....+ .=.|+|+|..++--+     -|||++..+
T Consensus      1235 ~a~FsP~D~LIl---ndGv--LWDvR~~~-----aIh~FD~----ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1235 LAHFSPCDTLIL---NDGV--LWDVRIPE-----AIHRFDQ----FTDYG-GGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             ccccCCCcceEe---eCce--eeeeccHH-----HHhhhhh----heecc-cccccCCCceEEeec-----hhhhhHHHH
Confidence            788999988765   4664  68766531     1221111    00001 124899998888765     478876543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.00095  Score=62.58  Aligned_cols=140  Identities=21%  Similarity=0.322  Sum_probs=89.3

Q ss_pred             CccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC-----CCEEEEEeCCCcEEEEEcc-CCceeee
Q 018675           38 VAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS-----GKLLATASFDATTCIWEDV-GGDYECV  111 (352)
Q Consensus        38 ~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-----~~~l~s~~~d~~i~i~~~~-~~~~~~~  111 (352)
                      .|.+++|||.||+|.|-.+.+.....+      .....++.+++++|+     .+.+++|+.-| +.++... -+....+
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v  154 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQ------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV  154 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCcccee------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce
Confidence            378999999999999988766543211      113478999999997     57888998888 7676421 0111112


Q ss_pred             EeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCe------eEEEEcCCCCEEEEEeCCC
Q 018675          112 ATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV------KMVQWHPTMDVLFSCSYDN  185 (352)
Q Consensus       112 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v------~~~~~~~~~~~l~s~~~d~  185 (352)
                       .+..-.++|.+++|.  |+++|=++.+| |+|+|+........+.  ..+ ..+      ..+.|.++. .|+.| +..
T Consensus       155 -~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~--~p~-~~~R~e~fpphl~W~~~~-~LVIG-W~d  225 (846)
T KOG2066|consen  155 -VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIP--PPS-QSVRPELFPPHLHWQDED-RLVIG-WGD  225 (846)
T ss_pred             -eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccC--CCC-CCCCcccCCCceEecCCC-eEEEe-cCC
Confidence             334456899999996  47888888777 8999986543322111  111 222      246676654 44454 445


Q ss_pred             cEEEEecC
Q 018675          186 TIKVWWAE  193 (352)
Q Consensus       186 ~i~iw~~~  193 (352)
                      +|+|..+.
T Consensus       226 ~v~i~~I~  233 (846)
T KOG2066|consen  226 SVKICSIK  233 (846)
T ss_pred             eEEEEEEe
Confidence            57777665

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.83  E-value=0.0035  Score=61.58  Aligned_cols=201  Identities=13%  Similarity=0.260  Sum_probs=118.1

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEE
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW  101 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~  101 (352)
                      +.|.++.|..+.      ..+.-+..+|.+.+-|.++..  +.+..    .-...|.+.+||||++.++..+.++++.+-
T Consensus        69 ~~i~s~~fl~d~------~~i~v~~~~G~iilvd~et~~--~eivg----~vd~GI~aaswS~Dee~l~liT~~~tll~m  136 (1265)
T KOG1920|consen   69 DEIVSVQFLADT------NSICVITALGDIILVDPETLE--LEIVG----NVDNGISAASWSPDEELLALITGRQTLLFM  136 (1265)
T ss_pred             cceEEEEEeccc------ceEEEEecCCcEEEEcccccc--eeeee----eccCceEEEeecCCCcEEEEEeCCcEEEEE
Confidence            688888887764      234555667778777766542  12221    134679999999999999988887777655


Q ss_pred             EccCC---c--e--------eee--------Eeecc---------------------ccCCeeEEEECCCCcEEEEe---
Q 018675          102 EDVGG---D--Y--------ECV--------ATLEG---------------------HENEVKSVSWNASGTLLATC---  136 (352)
Q Consensus       102 ~~~~~---~--~--------~~~--------~~~~~---------------------h~~~v~~v~~~~~~~~l~s~---  136 (352)
                      ...-.   +  .        +.+        ..+.|                     -.+.=+.|+|..+|+++++.   
T Consensus       137 T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~  216 (1265)
T KOG1920|consen  137 TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE  216 (1265)
T ss_pred             eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence            32100   0  0        000        00110                     01112358999999998873   


Q ss_pred             -eCC-CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEe---CCCcEEEEecCCCCCCCceeEeeeeccCC
Q 018675          137 -GRD-KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS---YDNTIKVWWAEDTDSDNWHCVQTISESNN  211 (352)
Q Consensus       137 -~~d-~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  211 (352)
                       ..+ ++++|||-. +. ......  .....-.+++|-|.|..+++-.   .|+.|.++.-+....+.+.    +.  ..
T Consensus       217 ~~~~~RkirV~drE-g~-Lns~se--~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~----l~--~p  286 (1265)
T KOG1920|consen  217 SETGTRKIRVYDRE-GA-LNSTSE--PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFV----LP--FP  286 (1265)
T ss_pred             ccCCceeEEEeccc-ch-hhcccC--cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccc----cC--Cc
Confidence             234 899999953 21 111111  1112234789999998887653   4557888843332222111    11  11


Q ss_pred             CCcccEEEEEEcCCCCEEEE---EeCCCcEEEEcCC
Q 018675          212 GHSSTIWALSFNAKGDKLVS---CSDDLTIKIWGAD  244 (352)
Q Consensus       212 ~h~~~i~~l~~~~~~~~l~s---~~~dg~i~iwd~~  244 (352)
                      .....|..|+|+.++..||.   ......|++|-+.
T Consensus       287 ~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  287 LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             ccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence            12334889999999999887   5555569999653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.83  E-value=0.00079  Score=63.56  Aligned_cols=71  Identities=20%  Similarity=0.341  Sum_probs=55.6

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE  102 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  102 (352)
                      .+++++|+|..      -.|+.|=.-|.+.+|+..+.+.     ..+..-|+.+|.-+.||++|..++++..-|.+.+|.
T Consensus        61 hatSLCWHpe~------~vLa~gwe~g~~~v~~~~~~e~-----htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr  129 (1416)
T KOG3617|consen   61 HATSLCWHPEE------FVLAQGWEMGVSDVQKTNTTET-----HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR  129 (1416)
T ss_pred             ehhhhccChHH------HHHhhccccceeEEEecCCcee-----eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence            34679999973      4567766668899998776532     233355899999999999999999999999999997


Q ss_pred             cc
Q 018675          103 DV  104 (352)
Q Consensus       103 ~~  104 (352)
                      ..
T Consensus       130 ~d  131 (1416)
T KOG3617|consen  130 YD  131 (1416)
T ss_pred             ee
Confidence            53

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.82  E-value=0.00088  Score=63.68  Aligned_cols=185  Identities=17%  Similarity=0.263  Sum_probs=110.1

Q ss_pred             CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeecc
Q 018675          130 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES  209 (352)
Q Consensus       130 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  209 (352)
                      +..++-|+-...+..+|++.....   ....-....++-+.  .+++.+.+|...|+|.+-|..     +.+.++++   
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~---r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~-----s~~~iht~---  213 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKET---RTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPN-----SFETIHTF---  213 (1118)
T ss_pred             Ccceeecchhhheeeeecccceee---eeeeccCCceEEEE--ecCcEEEeecccceEEeecCC-----cCceeeee---
Confidence            345666666666777887654322   11111222344333  466789999999999998543     34445554   


Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCC---------CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc
Q 018675          210 NNGHSSTIWALSFNAKGDKLVSCSDD---------LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG  280 (352)
Q Consensus       210 ~~~h~~~i~~l~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  280 (352)
                       ++|.+.|..  |+-.|+.|++||-.         .-|+|||+++.+........           -......+..+-..
T Consensus       214 -~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-----------~~P~flrf~Psl~t  279 (1118)
T KOG1275|consen  214 -DAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-----------YGPQFLRFHPSLTT  279 (1118)
T ss_pred             -eccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-----------cCchhhhhcccccc
Confidence             478888865  55568999999864         45789998754332211100           11112222222334


Q ss_pred             eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEe
Q 018675          281 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       281 ~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      .++.+++.|...+.+...  +. .+....  ......+..|.++.+|+.+. .+|-|..+|.|.+|.
T Consensus       280 ~~~V~S~sGq~q~vd~~~--ls-NP~~~~--~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  280 RLAVTSQSGQFQFVDTAT--LS-NPPAGV--KMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eEEEEecccceeeccccc--cC-CCccce--eEEccCCCcceeEEecCCCc-eEEEecccCcEeeec
Confidence            677777788877765321  11 111111  11223445599999999875 688999999999997

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.78  E-value=0.0042  Score=58.32  Aligned_cols=215  Identities=13%  Similarity=0.161  Sum_probs=126.2

Q ss_pred             eeeeeecCCccceEEEEEccCCCC-----CC-CccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC-
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGV-----DG-VAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP-   84 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~-----~~-~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-   84 (352)
                      ..+++++-|...|+.+.|.|....     ++ ...++|++.-.|.|.+||.........     ...|.+++..+.|-| 
T Consensus        46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~-----l~~~~~~~qdl~W~~~  120 (1062)
T KOG1912|consen   46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW-----LSHSNDSVQDLCWVPA  120 (1062)
T ss_pred             hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh-----hcCCCcchhheeeeec
Confidence            566788899999999999984321     11 234566666679999999765432111     133667888888855 


Q ss_pred             --CC-CEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCC----eeEEE
Q 018675           85 --SG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGN----EFECV  156 (352)
Q Consensus        85 --~~-~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~----~~~~~  156 (352)
                        +. ..|+.-..-+++.+|+-.+|+. .+. .........|+.+.| +...+..-+..|.+.+-+.....    +.+..
T Consensus       121 rd~Srd~LlaIh~ss~lvLwntdtG~k-~Wk-~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~  198 (1062)
T KOG1912|consen  121 RDDSRDVLLAIHGSSTLVLWNTDTGEK-FWK-YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEF  198 (1062)
T ss_pred             cCcchheeEEecCCcEEEEEEccCCce-eec-cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeE
Confidence              34 4555556668999998777652 232 222334566788888 45555555556766666542111    11111


Q ss_pred             EEeecCcc----------------C---------eeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCC
Q 018675          157 SVLQGHAQ----------------D---------VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN  211 (352)
Q Consensus       157 ~~~~~h~~----------------~---------v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  211 (352)
                      ..-..|..                .         ...++|+|..+.++-...-+.+.++|++-..     ++..+.-.  
T Consensus       199 qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~-----~l~vvpie--  271 (1062)
T KOG1912|consen  199 QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC-----CLAVVPIE--  271 (1062)
T ss_pred             EEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc-----eeEEEEec--
Confidence            11112211                0         1124578876655555677888888765421     22222211  


Q ss_pred             CCcccEEEEEEcC--CCCEEEEEeCCCcEEEEc
Q 018675          212 GHSSTIWALSFNA--KGDKLVSCSDDLTIKIWG  242 (352)
Q Consensus       212 ~h~~~i~~l~~~~--~~~~l~s~~~dg~i~iwd  242 (352)
                        .+.+.-+++-|  ..+.|...-.||.+.+|-
T Consensus       272 --r~~akfv~vlP~~~rd~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  272 --RGGAKFVDVLPDPRRDALFCLHSNGRLTIRV  302 (1062)
T ss_pred             --cCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence              12233355545  456788889999999994

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.77  E-value=1.8e-05  Score=71.81  Aligned_cols=208  Identities=13%  Similarity=0.186  Sum_probs=120.2

Q ss_pred             CCeeEEEECCC--CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-----CCcEEEEe
Q 018675          119 NEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-----DNTIKVWW  191 (352)
Q Consensus       119 ~~v~~v~~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----d~~i~iw~  191 (352)
                      ..+.|++++-+  ...++.|..+|.|-+-.++..... ......++...+++++|.+-+...+++|.     |..+.|||
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34566666443  346788888898888765432211 12334567888999999986543334433     45799998


Q ss_pred             cCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcce
Q 018675          192 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI  271 (352)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  271 (352)
                      +...-..+....+ +..   +-....++++|-.+.+++.+|.....++++|++.....             ........+
T Consensus       136 i~s~ltvPke~~~-fs~---~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-------------~~svnTk~v  198 (783)
T KOG1008|consen  136 INSLLTVPKESPL-FSS---STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-------------VSSVNTKYV  198 (783)
T ss_pred             cccccCCCccccc-ccc---ccccCccccccccCcchhhcccccchhhhhhhhhhhhh-------------hhhhhhhhc
Confidence            8664221111111 110   12234558899888889999999999999998632110             000112223


Q ss_pred             EEEEecC--CceEEecCCCCeEEEEEccCCccccCcccc-eeeecccccCcceeEEEecCCCcceEEEecCC-CeEEEEe
Q 018675          272 FSVHWSR--EGIIASGAADDSVQFFVESKDDLIDGPSYK-MLLKKEKAHDMDVNSVQWSPGERRLLASASDD-GMIKIWE  347 (352)
Q Consensus       272 ~~~~~~~--~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~D-g~i~iw~  347 (352)
                      ..+..+|  .+++++.. |+.+.+|+...    +...+- .+.......-..+..++|.|....++++...| ++|++++
T Consensus       199 qG~tVdp~~~nY~cs~~-dg~iAiwD~~r----nienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd  273 (783)
T KOG1008|consen  199 QGITVDPFSPNYFCSNS-DGDIAIWDTYR----NIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD  273 (783)
T ss_pred             ccceecCCCCCceeccc-cCceeeccchh----hhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence            3344445  34555544 99999997311    111110 01111111122488999999876678888877 5788888


Q ss_pred             ec
Q 018675          348 LA  349 (352)
Q Consensus       348 ~~  349 (352)
                      +.
T Consensus       274 i~  275 (783)
T KOG1008|consen  274 IC  275 (783)
T ss_pred             cc
Confidence            74

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.74  E-value=0.0056  Score=54.24  Aligned_cols=144  Identities=13%  Similarity=0.182  Sum_probs=96.8

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCC-eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCc
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDK-TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDAT   97 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~-~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   97 (352)
                      +|...|.-..+.-+      +.-++.|-.|| .+-+++..+++.    +. + ...-+.|.++..+|+|+.++.+.....
T Consensus       357 ~~~~~VrY~r~~~~------~e~~vigt~dgD~l~iyd~~~~e~----kr-~-e~~lg~I~av~vs~dGK~~vvaNdr~e  424 (668)
T COG4946         357 GKKGGVRYRRIQVD------PEGDVIGTNDGDKLGIYDKDGGEV----KR-I-EKDLGNIEAVKVSPDGKKVVVANDRFE  424 (668)
T ss_pred             CCCCceEEEEEccC------CcceEEeccCCceEEEEecCCceE----EE-e-eCCccceEEEEEcCCCcEEEEEcCceE
Confidence            67777766655443      24577778888 899999887642    11 1 112367999999999999998877777


Q ss_pred             EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCC----cEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675           98 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK----SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus        98 i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~----~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                      +-+.|..+++...+.  +...+-|+.+.|+|++.++|-+-.+|    .|+++|+..++.+.. .+..+|.   -+=+|.|
T Consensus       425 l~vididngnv~~id--kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-TT~ta~D---fsPaFD~  498 (668)
T COG4946         425 LWVIDIDNGNVRLID--KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-TTPTAYD---FSPAFDP  498 (668)
T ss_pred             EEEEEecCCCeeEec--ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe-cCCcccc---cCcccCC
Confidence            777788887654333  23456799999999999999776654    788999875543321 2222222   1234667


Q ss_pred             CCCEEEE
Q 018675          174 TMDVLFS  180 (352)
Q Consensus       174 ~~~~l~s  180 (352)
                      ++++|.-
T Consensus       499 d~ryLYf  505 (668)
T COG4946         499 DGRYLYF  505 (668)
T ss_pred             CCcEEEE
Confidence            7776543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.71  E-value=0.033  Score=50.25  Aligned_cols=266  Identities=11%  Similarity=0.065  Sum_probs=132.9

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccc
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE  118 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~  118 (352)
                      +..++.++.++.+..+|..+++..|+....-  ...   ....  .++..++.++.++.+..+|..+++.. .. ... .
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~--~~~---~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~-W~-~~~-~  134 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDE--RLS---GGVG--ADGGLVFVGTEKGEVIALDAEDGKEL-WR-AKL-S  134 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCC--Ccc---cceE--EcCCEEEEEcCCCEEEEEECCCCcEe-ee-ecc-C
Confidence            3577888889999999998888777643211  011   1111  24667778888999999998777532 21 111 1


Q ss_pred             CCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCe-----eEEEEcCCCCEEEEEeCCCcEEEEecC
Q 018675          119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV-----KMVQWHPTMDVLFSCSYDNTIKVWWAE  193 (352)
Q Consensus       119 ~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~s~~~d~~i~iw~~~  193 (352)
                      +.+.+.-.- .+..++.++.++.+..+|...++..   ..........     .+...  .+..++.+..++.+..++..
T Consensus       135 ~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~---W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~  208 (377)
T TIGR03300       135 SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERL---WTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQ  208 (377)
T ss_pred             ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCcee---eEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEcc
Confidence            222211000 2446666778899999998766432   2211111110     00011  12356777778888888765


Q ss_pred             CCCCCCceeEeeeeccCCCCc--ccEEEEEEcC--CCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCc
Q 018675          194 DTDSDNWHCVQTISESNNGHS--STIWALSFNA--KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR  269 (352)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~h~--~~i~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (352)
                      ... ..|..  .... ..+..  .....+.-+|  .+..+..++.+|.+..+|.+..+       ..|...  ..     
T Consensus       209 tG~-~~W~~--~~~~-~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~-------~~W~~~--~~-----  270 (377)
T TIGR03300       209 TGQ-PLWEQ--RVAL-PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR-------VLWKRD--AS-----  270 (377)
T ss_pred             CCC-Eeeee--cccc-CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc-------EEEeec--cC-----
Confidence            432 11211  0100 00000  0000010111  24577778889999999874321       123211  00     


Q ss_pred             ceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          270 TIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       270 ~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ....... .++.+..++.++.+..++........    . .  ..... .........  +.. +..++.||.|.++|..
T Consensus       271 ~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W----~-~--~~~~~-~~~ssp~i~--g~~-l~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       271 SYQGPAV-DDNRLYVTDADGVVVALDRRSGSELW----K-N--DELKY-RQLTAPAVV--GGY-LVVGDFEGYLHWLSRE  338 (377)
T ss_pred             CccCceE-eCCEEEEECCCCeEEEEECCCCcEEE----c-c--ccccC-CccccCEEE--CCE-EEEEeCCCEEEEEECC
Confidence            0111111 24566677788888888664322110    0 0  00000 111111221  333 5568889999998875


Q ss_pred             c
Q 018675          350 N  350 (352)
Q Consensus       350 ~  350 (352)
                      +
T Consensus       339 t  339 (377)
T TIGR03300       339 D  339 (377)
T ss_pred             C
Confidence            4

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.68  E-value=0.033  Score=49.03  Aligned_cols=227  Identities=15%  Similarity=0.105  Sum_probs=117.5

Q ss_pred             cCCccceeeeeeecCCccceEEEEEccCCCC-CCCccEEEEeeC----------CCeEEEEecCCC-ceeeeeeeeeecc
Q 018675            5 DDGNYELREIQTLEGHTDRVWSLAWKPTAGV-DGVAPVFASCSG----------DKTVRIWEQSAS-SRFWNCKAVLEEM   72 (352)
Q Consensus         5 ~~~~~~~~~~~~~~gH~~~V~~i~~~p~~~~-~~~~~~l~s~s~----------D~~v~~w~~~~~-~~~~~~~~~~~~~   72 (352)
                      +..++.......|.. .+.+++++...-... ....++++.|..          .|.+.++++... ....+.+......
T Consensus         8 d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~   86 (321)
T PF03178_consen    8 DPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE   86 (321)
T ss_dssp             ETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE
T ss_pred             eCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe
Confidence            444444333344543 345555544331110 011356766632          288999998763 2112333333344


Q ss_pred             eecceEEEEECCCCCEEEEEeCCCcEEEEEccCCc-eeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC
Q 018675           73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~  151 (352)
                      .+++|+++.-- +++ |+.+ ..+.+.+|+....+ .........+ ..+.++..  .+++++.|.....+.++......
T Consensus        87 ~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~  160 (321)
T PF03178_consen   87 VKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSP-FYITSLSV--FKNYILVGDAMKSVSLLRYDEEN  160 (321)
T ss_dssp             ESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BS-SSEEEEEE--ETTEEEEEESSSSEEEEEEETTT
T ss_pred             ecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecce-EEEEEEec--cccEEEEEEcccCEEEEEEEccC
Confidence            57889888655 455 4433 34889999987766 4444444322 24555544  45688889888888887554332


Q ss_pred             e-eEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCC--Cce-eEeeeeccCCCCcccEEEE---EEcC
Q 018675          152 E-FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD--NWH-CVQTISESNNGHSSTIWAL---SFNA  224 (352)
Q Consensus       152 ~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~-~~~~~~~~~~~h~~~i~~l---~~~~  224 (352)
                      . ...+.. ......++++.+-++++.++.+..+|.+.++........  ... .+......  -.+..|+++   ++.|
T Consensus       161 ~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f--~lg~~v~~~~~~~l~~  237 (321)
T PF03178_consen  161 NKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF--HLGDIVNSFRRGSLIP  237 (321)
T ss_dssp             E-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE--E-SS-EEEEEE--SS-
T ss_pred             CEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE--ECCCccceEEEEEeee
Confidence            2 332222 223445788888866678999999999999865432111  111 11111111  123567666   4445


Q ss_pred             C--CC------EEEEEeCCCcEEEE
Q 018675          225 K--GD------KLVSCSDDLTIKIW  241 (352)
Q Consensus       225 ~--~~------~l~s~~~dg~i~iw  241 (352)
                      .  +.      .++-++.+|.|-..
T Consensus       238 ~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  238 RSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cCCCCcccccceEEEEecCCEEEEE
Confidence            2  22      37777888888744

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>smart00320 WD40 WD40 repeats

Probab=97.66  E-value=0.00017  Score=40.39  Aligned_cols=38  Identities=39%  Similarity=0.713  Sum_probs=32.6

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEe
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWE   55 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~   55 (352)
                      ..+..+.+|...|+++.|.|.      ..++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPD------GKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCC------CCEEEEecCCCeEEEcC
Confidence            345677789999999999986      36899999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.005  Score=53.38  Aligned_cols=77  Identities=18%  Similarity=0.236  Sum_probs=61.4

Q ss_pred             ceecceEEEEECCCCC-EEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCC
Q 018675           72 MHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMP  149 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~-~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~  149 (352)
                      .|...|+.++|||..+ ++..++-+.+|+|.|..+.  .++.....+ ..+++++|..+. +++++|-..|.|.++|++.
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            4667899999999877 6788999999999998765  334444455 789999998754 5688888999999999975


Q ss_pred             CC
Q 018675          150 GN  151 (352)
Q Consensus       150 ~~  151 (352)
                      ..
T Consensus       268 ~~  269 (463)
T KOG1645|consen  268 PE  269 (463)
T ss_pred             CC
Confidence            43

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.62  E-value=0.048  Score=49.17  Aligned_cols=261  Identities=11%  Similarity=0.126  Sum_probs=130.9

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccc
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE  118 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~  118 (352)
                      +..++.++.|+.+..+|..+++..|+....      ..+.+.-.- .+..++.+..++.+..+|..+++.  +-......
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~------~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~--~W~~~~~~  175 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS------SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGER--LWTYSRVT  175 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccC------ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCce--eeEEccCC
Confidence            356777788999999999888877754321      111111001 245666677889999999877643  22221111


Q ss_pred             CCeeEEE-E-CC--CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec--Cc--cCeeEEEEcC--CCCEEEEEeCCCcEE
Q 018675          119 NEVKSVS-W-NA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG--HA--QDVKMVQWHP--TMDVLFSCSYDNTIK  188 (352)
Q Consensus       119 ~~v~~v~-~-~~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--h~--~~v~~~~~~~--~~~~l~s~~~d~~i~  188 (352)
                       ....+. . +|  .+..++.+..++.+..+|...+...-.......  ..  .....+.-+|  .+..++.++.++.+.
T Consensus       176 -~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~  254 (377)
T TIGR03300       176 -PALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVA  254 (377)
T ss_pred             -CceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEE
Confidence             110000 0 01  124667777888999999876643211110000  00  0000000111  245677888899999


Q ss_pred             EEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccC
Q 018675          189 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD  268 (352)
Q Consensus       189 iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (352)
                      .++..... ..|.    ..  .....    ...  ..+..+..++.||.+..+|....+.       .|+... +.   .
T Consensus       255 a~d~~tG~-~~W~----~~--~~~~~----~p~--~~~~~vyv~~~~G~l~~~d~~tG~~-------~W~~~~-~~---~  310 (377)
T TIGR03300       255 ALDLRSGR-VLWK----RD--ASSYQ----GPA--VDDNRLYVTDADGVVVALDRRSGSE-------LWKNDE-LK---Y  310 (377)
T ss_pred             EEECCCCc-EEEe----ec--cCCcc----Cce--EeCCEEEEECCCCeEEEEECCCCcE-------EEcccc-cc---C
Confidence            99875431 1121    11  00111    111  2356777788899999998753221       122100 00   0


Q ss_pred             cceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCccee-EEEecCCCcceEEEecCCCeEEEE
Q 018675          269 RTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVN-SVQWSPGERRLLASASDDGMIKIW  346 (352)
Q Consensus       269 ~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~sp~~~~~l~s~~~Dg~i~iw  346 (352)
                      ....+... .++.++.++.+|.+++++.....+         +.+...+...+. .-.+ .++ .++ .++.||.|..|
T Consensus       311 ~~~ssp~i-~g~~l~~~~~~G~l~~~d~~tG~~---------~~~~~~~~~~~~~sp~~-~~~-~l~-v~~~dG~l~~~  376 (377)
T TIGR03300       311 RQLTAPAV-VGGYLVVGDFEGYLHWLSREDGSF---------VARLKTDGSGIASPPVV-VGD-GLL-VQTRDGDLYAF  376 (377)
T ss_pred             CccccCEE-ECCEEEEEeCCCEEEEEECCCCCE---------EEEEEcCCCccccCCEE-ECC-EEE-EEeCCceEEEe
Confidence            00111111 245788888999999886543222         112222222222 2223 234 344 58889988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>smart00320 WD40 WD40 repeats

Probab=97.60  E-value=0.00023  Score=39.76  Aligned_cols=36  Identities=33%  Similarity=0.710  Sum_probs=31.6

Q ss_pred             eEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEe
Q 018675          111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE  146 (352)
Q Consensus       111 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd  146 (352)
                      ...+..|...|+++.|++.+..+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            445567888999999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.52  E-value=0.02  Score=53.40  Aligned_cols=107  Identities=15%  Similarity=0.107  Sum_probs=76.8

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCc-eeeeEe--e-
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVAT--L-  114 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~-~~~~~~--~-  114 (352)
                      .++++-|+.-|.+.+|+...+..... +.   ..-.+.+..+.++++..++|.|+..|.|.++-..... ......  . 
T Consensus        45 ~~~l~~GsS~G~lyl~~R~~~~~~~~-~~---~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d  120 (726)
T KOG3621|consen   45 EEYLAMGSSAGSVYLYNRHTGEMRKL-KN---EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD  120 (726)
T ss_pred             CceEEEecccceEEEEecCchhhhcc-cc---cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence            47899999999999999876643211 11   1123556677889999999999999999888543311 111111  1 


Q ss_pred             ccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCC
Q 018675          115 EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP  149 (352)
Q Consensus       115 ~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~  149 (352)
                      +.|...|+|++|++++..+++|...|+|.+-.+..
T Consensus       121 ~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  121 KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            23677899999999999999999999998877643

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.01  Score=51.55  Aligned_cols=81  Identities=12%  Similarity=0.210  Sum_probs=63.6

Q ss_pred             EeeccccCCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC-EEEEEeCCCcEEE
Q 018675          112 ATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VLFSCSYDNTIKV  189 (352)
Q Consensus       112 ~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~i  189 (352)
                      .-+.+|...|+.++|+|..+ ++..++.+++|++.|+...   .++..+..+ ..+++++|.-++. ++..|-..|.|.+
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence            34556778899999999877 7889999999999998643   234555556 5799999987655 5677888999999


Q ss_pred             EecCCCC
Q 018675          190 WWAEDTD  196 (352)
Q Consensus       190 w~~~~~~  196 (352)
                      ||++.+.
T Consensus       263 yD~R~~~  269 (463)
T KOG1645|consen  263 YDMRQPE  269 (463)
T ss_pred             EEccCCC
Confidence            9987753

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.30  E-value=0.079  Score=44.35  Aligned_cols=204  Identities=13%  Similarity=0.162  Sum_probs=100.5

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      ...+.|=.+.+++++|.|+.     +.+++.....+.|.-.+.+ ++ +.... .+..  .+-.-.+++..++.++++--
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~-----~tLfaV~d~~~~i~els~~-G~-vlr~i-~l~g--~~D~EgI~y~g~~~~vl~~E   83 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDT-----GTLFAVQDEPGEIYELSLD-GK-VLRRI-PLDG--FGDYEGITYLGNGRYVLSEE   83 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTT-----TEEEEEETTTTEEEEEETT----EEEEE-E-SS---SSEEEEEE-STTEEEEEET
T ss_pred             eeECCCccCCccccEEcCCC-----CeEEEEECCCCEEEEEcCC-CC-EEEEE-eCCC--CCCceeEEEECCCEEEEEEc
Confidence            45677777789999999975     3466665566666555543 22 22211 1111  23456777777777777665


Q ss_pred             CCCcEEEEEccCC--ce--eeeE--ee---ccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCC---CCeeEEEEEee-
Q 018675           94 FDATTCIWEDVGG--DY--ECVA--TL---EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP---GNEFECVSVLQ-  160 (352)
Q Consensus        94 ~d~~i~i~~~~~~--~~--~~~~--~~---~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~---~~~~~~~~~~~-  160 (352)
                      .++.+.+++....  ..  ....  .+   ..++..+..++|.|.++.|+.+-+.....++.+..   ...... .... 
T Consensus        84 r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~-~~~~~  162 (248)
T PF06977_consen   84 RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV-SDDQD  162 (248)
T ss_dssp             TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE-EE-HH
T ss_pred             CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee-ccccc
Confidence            5888887776221  11  1111  11   13456789999999888888888877777777653   111111 1111 


Q ss_pred             -----cCccCeeEEEEcCCC-CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCC---CcccEEEEEEcCCCCEEEE
Q 018675          161 -----GHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG---HSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       161 -----~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~---h~~~i~~l~~~~~~~~l~s  231 (352)
                           .....+..+.++|.. .+++.....+.+..+|....    ......+.....+   .-...-.|+|.++|++.++
T Consensus       163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~----~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv  238 (248)
T PF06977_consen  163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR----VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV  238 (248)
T ss_dssp             HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT------EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred             cccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC----EEEEEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence                 123456688899864 45556666777877763221    1111222211100   1134557899999987766


Q ss_pred             E
Q 018675          232 C  232 (352)
Q Consensus       232 ~  232 (352)
                      +
T Consensus       239 s  239 (248)
T PF06977_consen  239 S  239 (248)
T ss_dssp             E
T ss_pred             c
Confidence            5

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.0019  Score=59.07  Aligned_cols=74  Identities=23%  Similarity=0.376  Sum_probs=62.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCee-EEEECCCCcEEEEeeCCCcEEEEecCCCC
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK-SVSWNASGTLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~l~s~~~d~~v~vwd~~~~~  151 (352)
                      -.+.-+.|+|...++|.+..+|.+.++...   ++.+.++.-|...++ +++|.|+|++|+.|-.||+|++.|+..+.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n---~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN---WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec---cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            346678899999999999999999888653   345666666777777 99999999999999999999999987654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.28  E-value=0.00096  Score=61.67  Aligned_cols=121  Identities=14%  Similarity=0.131  Sum_probs=85.5

Q ss_pred             ceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC
Q 018675           72 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~  151 (352)
                      .+...|.--+++..+++++.|+.-|.+.+|.-.++... ...-.+-.+.+..++.+++..++|.|+..+.|.++.++...
T Consensus        31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             cCcceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence            34555655567888999999999999999975544322 22222334556667778888888889999999888876533


Q ss_pred             eeEE--EEE-eecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecC
Q 018675          152 EFEC--VSV-LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE  193 (352)
Q Consensus       152 ~~~~--~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~  193 (352)
                      +...  +.. -+.|...|+++.|++++..+++|...|.|.+-.+.
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~  154 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD  154 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence            2221  111 22367889999999999999999999988766443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.27  E-value=0.00033  Score=66.30  Aligned_cols=156  Identities=15%  Similarity=0.154  Sum_probs=100.4

Q ss_pred             ceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEee-CCC-cEEEEecCC
Q 018675           72 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG-RDK-SVWIWEVMP  149 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~-~v~vwd~~~  149 (352)
                      .|+..-+|++|+.+.+.|+.|+..|.|++|+..+|..  .....+|+++|+-+.=+.+|..+++.+ ... -..+|++..
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCccc--cccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence            3667889999999999999999999999999887643  456689999999998788888765544 333 456899753


Q ss_pred             CCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE
Q 018675          150 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL  229 (352)
Q Consensus       150 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  229 (352)
                        .....+.+    ..-.++.|+..-..-+.|.......+||+.....     ++++.....+....=+...|+|..+++
T Consensus      1177 --~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~-----l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1177 --TGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSP-----LQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             --ccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcH-----HHHhcCcchhhhhhccccccCCCcceE
Confidence              22233333    2445677776533333444445677897754321     122111111222233567899988876


Q ss_pred             EEEeCCCcEEEEcCCc
Q 018675          230 VSCSDDLTIKIWGADI  245 (352)
Q Consensus       230 ~s~~~dg~i~iwd~~~  245 (352)
                      +   .||  .+||.+.
T Consensus      1246 l---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1246 L---NDG--VLWDVRI 1256 (1516)
T ss_pred             e---eCc--eeeeecc
Confidence            5   455  4588764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.15  E-value=0.12  Score=43.44  Aligned_cols=188  Identities=10%  Similarity=0.078  Sum_probs=102.1

Q ss_pred             eEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC--------
Q 018675           24 VWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD--------   95 (352)
Q Consensus        24 V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d--------   95 (352)
                      ..++.+.+.+      ..|+.+..++ +.+++..+++.................+.+++.|+|++.++....        
T Consensus        42 ~~G~~~~~~~------g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~  114 (246)
T PF08450_consen   42 PNGMAFDRPD------GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDP  114 (246)
T ss_dssp             EEEEEEECTT------SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGS
T ss_pred             CceEEEEccC------CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccc
Confidence            4456666322      2445544544 445587765321111110001123567899999999988876644        


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEE-EeeCCCcEEEEecCCCCe-eEEEEEe---ecCccCeeEEE
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIWEVMPGNE-FECVSVL---QGHAQDVKMVQ  170 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~vwd~~~~~~-~~~~~~~---~~h~~~v~~~~  170 (352)
                      +.+..++.. ++..   .+...-...+.++|+|+++.|+ +-+..+.|..+++..... ......+   .......-.++
T Consensus       115 g~v~~~~~~-~~~~---~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~  190 (246)
T PF08450_consen  115 GSVYRIDPD-GKVT---VVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLA  190 (246)
T ss_dssp             EEEEEEETT-SEEE---EEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEE
T ss_pred             cceEEECCC-CeEE---EEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcce
Confidence            334444433 2222   2222245578999999998665 566778888888753322 2222222   11111256788


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc-CCCC-EEEEE
Q 018675          171 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN-AKGD-KLVSC  232 (352)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~~-~l~s~  232 (352)
                      +..++.+.++....+.|.+++....      .+..+..   . ...+.+++|. ++.+ +++|.
T Consensus       191 vD~~G~l~va~~~~~~I~~~~p~G~------~~~~i~~---p-~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  191 VDSDGNLWVADWGGGRIVVFDPDGK------LLREIEL---P-VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EBTTS-EEEEEETTTEEEEEETTSC------EEEEEE----S-SSSEEEEEEESTTSSEEEEEE
T ss_pred             EcCCCCEEEEEcCCCEEEEECCCcc------EEEEEcC---C-CCCEEEEEEECCCCCEEEEEe
Confidence            9999988777778889999975421      2222221   1 2468899994 5544 44443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=0.0028  Score=57.98  Aligned_cols=74  Identities=24%  Similarity=0.435  Sum_probs=57.3

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceE-EEEECCCCCEEEEEeCCCcEEE
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR-SCAWSPSGKLLATASFDATTCI  100 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~d~~i~i  100 (352)
                      -.|.-+.|+|.      .+++|++-.+|.|.+.... -.++|..+     .|...++ +++|.|||+.||.|-.||+|++
T Consensus        21 ~~i~~~ewnP~------~dLiA~~t~~gelli~R~n-~qRlwtip-----~p~~~v~~sL~W~~DGkllaVg~kdG~I~L   88 (665)
T KOG4640|consen   21 INIKRIEWNPK------MDLIATRTEKGELLIHRLN-WQRLWTIP-----IPGENVTASLCWRPDGKLLAVGFKDGTIRL   88 (665)
T ss_pred             cceEEEEEcCc------cchhheeccCCcEEEEEec-cceeEecc-----CCCCccceeeeecCCCCEEEEEecCCeEEE
Confidence            35667899997      4789999999988887655 33445432     1445566 9999999999999999999999


Q ss_pred             EEccCCc
Q 018675          101 WEDVGGD  107 (352)
Q Consensus       101 ~~~~~~~  107 (352)
                      .|...+.
T Consensus        89 ~Dve~~~   95 (665)
T KOG4640|consen   89 HDVEKGG   95 (665)
T ss_pred             EEccCCC
Confidence            9987654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.14  E-value=0.031  Score=39.87  Aligned_cols=101  Identities=20%  Similarity=0.277  Sum_probs=61.6

Q ss_pred             EEEEEEc---CCC-CEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEE
Q 018675          217 IWALSFN---AKG-DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQ  292 (352)
Q Consensus       217 i~~l~~~---~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~  292 (352)
                      |.+|++.   .+| +.|+.|+.|..||+|+-+.             ....+  .....+.++.....+.++.+..+|+|.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------------~~~Ei--~e~~~v~~L~~~~~~~F~Y~l~NGTVG   66 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------------IVAEI--TETDKVTSLCSLGGGRFAYALANGTVG   66 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------------EEEEE--ecccceEEEEEcCCCEEEEEecCCEEE
Confidence            4455543   343 5799999999999996431             11111  123456777777778899999999999


Q ss_pred             EEEccCCccccCcccceeeecccccCcceeEEEe---cCCCcceEEEecCCCeEE
Q 018675          293 FFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW---SPGERRLLASASDDGMIK  344 (352)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~---sp~~~~~l~s~~~Dg~i~  344 (352)
                      +|....      ..+ .+.   ..|  .++++.+   .-||..-|++|=.+|.|-
T Consensus        67 vY~~~~------RlW-RiK---SK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   67 VYDRSQ------RLW-RIK---SKN--QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEeCcc------eee-eec---cCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            995432      111 111   122  2555544   345555677888888774

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.12  E-value=0.14  Score=43.81  Aligned_cols=100  Identities=14%  Similarity=0.152  Sum_probs=61.6

Q ss_pred             EEEEECC-CCCEEEEEeCCCc-EEEEEccCCceeeeEeeccccCCee--EEEECCCCcEEEEe-----eCCCcEEEEecC
Q 018675           78 RSCAWSP-SGKLLATASFDAT-TCIWEDVGGDYECVATLEGHENEVK--SVSWNASGTLLATC-----GRDKSVWIWEVM  148 (352)
Q Consensus        78 ~~~~~s~-~~~~l~s~~~d~~-i~i~~~~~~~~~~~~~~~~h~~~v~--~v~~~~~~~~l~s~-----~~d~~v~vwd~~  148 (352)
                      ..++.+| .+..++.+---|+ ..+||..++...  ..+....+.-.  --.|+++|++|++.     ...|.|-|||..
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~--~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL--QRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee--eEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            4566777 4455566655554 446777666432  22222112111  24689999999886     345789999986


Q ss_pred             CCCeeEEEEEeecCccCeeEEEEcCCCCEEEEE
Q 018675          149 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC  181 (352)
Q Consensus       149 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  181 (352)
                        ..+..+..+..|--.--.+.+.|+++.|+.+
T Consensus        86 --~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA  116 (305)
T PF07433_consen   86 --RGYRRIGEFPSHGIGPHELLLMPDGETLVVA  116 (305)
T ss_pred             --CCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence              3345566666655445567789999777765

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.98  E-value=0.17  Score=42.36  Aligned_cols=168  Identities=11%  Similarity=0.179  Sum_probs=89.8

Q ss_pred             cceEEEEECCCCCEE-EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe-
Q 018675           75 RTVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE-  152 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l-~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~-  152 (352)
                      ..+..++|+|+.+.| ++....+.|..++. .++......+.+ .+....|.+..++.++++.-.++.+.+.++..... 
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            348999999986655 45555566655554 444433334444 35677888887777666655688898888732211 


Q ss_pred             --eE---EEE--EeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCC-CCceeEeeee-ccCCCCcccEEEEEEc
Q 018675          153 --FE---CVS--VLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS-DNWHCVQTIS-ESNNGHSSTIWALSFN  223 (352)
Q Consensus       153 --~~---~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~-~~~~~h~~~i~~l~~~  223 (352)
                        ..   .+.  ....+...+-.++|.|....|+.+-+..-..+|.+..... .......... .........+.+++++
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~  179 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD  179 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence              11   111  1112445678999999888888887777677776543110 0111000000 0012234567889999


Q ss_pred             CC-CCEEEEEeCCCcEEEEcCC
Q 018675          224 AK-GDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       224 ~~-~~~l~s~~~dg~i~iwd~~  244 (352)
                      |. +.+++.+..+..|..+|.+
T Consensus       180 p~t~~lliLS~es~~l~~~d~~  201 (248)
T PF06977_consen  180 PRTGHLLILSDESRLLLELDRQ  201 (248)
T ss_dssp             TTTTEEEEEETTTTEEEEE-TT
T ss_pred             CCCCeEEEEECCCCeEEEECCC
Confidence            96 6677778888888888853

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.88  E-value=0.091  Score=37.54  Aligned_cols=96  Identities=15%  Similarity=0.143  Sum_probs=61.1

Q ss_pred             ECCCC-CEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEee
Q 018675           82 WSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ  160 (352)
Q Consensus        82 ~s~~~-~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~  160 (352)
                      |.-|| ..|++|+.|..|++|+..    ..+..+.. .+.|.++.-... ..|+.+-.+|+|-+|+-. .+    +...+
T Consensus        10 ~d~dg~~eLlvGs~D~~IRvf~~~----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-~R----lWRiK   78 (111)
T PF14783_consen   10 FDGDGENELLVGSDDFEIRVFKGD----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRS-QR----LWRIK   78 (111)
T ss_pred             cCCCCcceEEEecCCcEEEEEeCC----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCc-ce----eeeec
Confidence            34444 579999999999999743    23445543 467777775554 668889999999999842 11    22222


Q ss_pred             cCccCeeEEEEcC-CC---CEEEEEeCCCcEEE
Q 018675          161 GHAQDVKMVQWHP-TM---DVLFSCSYDNTIKV  189 (352)
Q Consensus       161 ~h~~~v~~~~~~~-~~---~~l~s~~~d~~i~i  189 (352)
                      .. ..++++.+.. ++   ..|++|..+|.|-+
T Consensus        79 SK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   79 SK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             cC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            22 2355655432 22   25888888887643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.87  E-value=0.36  Score=44.27  Aligned_cols=228  Identities=16%  Similarity=0.199  Sum_probs=102.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE  154 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  154 (352)
                      -....++++|+|+.++.+ .||...||......  ..     ..+.-..+.|.+. +.+|.-...++|.++.-.......
T Consensus        33 ~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r--~k-----~~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR--NK-----AFGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             S--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE--EE-----EEEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-
T ss_pred             cCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc--cc-----ccCceeEEEEecC-ccEEEEECCCeEEEEEcCccccce
Confidence            346889999999999884 56777777633221  11     1234567889884 456667668889996422111101


Q ss_pred             EEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC
Q 018675          155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD  234 (352)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~  234 (352)
                      .   +..   +...-...+ |.+|+..+.+ .|.+||....     ..+..+.      -.+|..+-|++++++++-.+.
T Consensus       104 ~---i~~---~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~-----~~i~~i~------v~~vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen  104 S---IKL---PFSVEKIFG-GNLLGVKSSD-FICFYDWETG-----KLIRRID------VSAVKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             ----------SS-EEEEE--SSSEEEEETT-EEEEE-TTT-------EEEEES------S-E-EEEEE-TTSSEEEEE-S
T ss_pred             E---EcC---CcccceEEc-CcEEEEECCC-CEEEEEhhHc-----ceeeEEe------cCCCcEEEEECCCCEEEEEeC
Confidence            1   110   111112222 6666666544 7999976543     2333332      234889999999999988875


Q ss_pred             CCcEEEEcCCccc--cccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeee
Q 018675          235 DLTIKIWGADITR--MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK  312 (352)
Q Consensus       235 dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~  312 (352)
                      + .+.|.+.+...  ....++...  ..+.+. .-...|.+..|..+-++.+-..  .++++.....         .++.
T Consensus       165 ~-~i~il~~~~~~~~~~~~~g~e~--~f~~~~-E~~~~IkSg~W~~d~fiYtT~~--~lkYl~~Ge~---------~~i~  229 (443)
T PF04053_consen  165 D-SIYILKYNLEAVAAIPEEGVED--AFELIH-EISERIKSGCWVEDCFIYTTSN--HLKYLVNGET---------GIIA  229 (443)
T ss_dssp             --SEEEEEE-HHHHHHBTTTB-GG--GEEEEE-EE-S--SEEEEETTEEEEE-TT--EEEEEETTEE---------EEEE
T ss_pred             C-eEEEEEecchhcccccccCchh--ceEEEE-EecceeEEEEEEcCEEEEEcCC--eEEEEEcCCc---------ceEE
Confidence            5 67777654321  111222221  111111 1134567777776633333332  4554322110         1111


Q ss_pred             cccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          313 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       313 ~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      .   -..++.=+...|...+++ ....|+.+..+.+.
T Consensus       230 ~---ld~~~yllgy~~~~~~ly-~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  230 H---LDKPLYLLGYLPKENRLY-LIDRDGNVISYELD  262 (443)
T ss_dssp             E----SS--EEEEEETTTTEEE-EE-TT--EEEEE--
T ss_pred             E---cCCceEEEEEEccCCEEE-EEECCCCEEEEEEC
Confidence            1   123444455556444443 56677777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.80  E-value=0.26  Score=41.68  Aligned_cols=157  Identities=16%  Similarity=0.119  Sum_probs=86.6

Q ss_pred             ceEEEEECCCCCEEEEEe-CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEe-cCCCCee
Q 018675           76 TVRSCAWSPSGKLLATAS-FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE-VMPGNEF  153 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~-~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd-~~~~~~~  153 (352)
                      .+.+.+++++|+.++... .++.-.+|-...+. .....+.+  ..+..-+|.+++...+....+...+++. ...+. .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~-~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT-G  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc-c
Confidence            578889999999877655 23333333322221 11122222  3677889999987776666666666663 22221 1


Q ss_pred             EEEEE-eecCccCeeEEEEcCCCCEEEEEe---CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE
Q 018675          154 ECVSV-LQGHAQDVKMVQWHPTMDVLFSCS---YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL  229 (352)
Q Consensus       154 ~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  229 (352)
                      ..... ...-...|..++++||+..++...   .++.+.+--+.......-..+.............+.++.|.+++.++
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence            11111 111111799999999999876554   34666665443322220111111111112234678899999999887


Q ss_pred             EEEeCCC
Q 018675          230 VSCSDDL  236 (352)
Q Consensus       230 ~s~~~dg  236 (352)
                      +.+...+
T Consensus       181 V~~~~~~  187 (253)
T PF10647_consen  181 VLGRSAG  187 (253)
T ss_pred             EEeCCCC
Confidence            7665433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.76  E-value=0.42  Score=43.58  Aligned_cols=31  Identities=13%  Similarity=0.237  Sum_probs=27.2

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          215 STIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       215 ~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      +++..++.||+++++|.-..+|.+.+.+.+.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF  247 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence            5799999999999999999999998886553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.75  E-value=0.26  Score=40.99  Aligned_cols=138  Identities=12%  Similarity=0.095  Sum_probs=78.4

Q ss_pred             CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEEC
Q 018675           48 DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN  127 (352)
Q Consensus        48 D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~  127 (352)
                      +++|..||..+++.+|+...  .......+ +. ..+++..+.+++.++.+..||..+++..-...+   .+.+...- .
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~--~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~---~~~~~~~~-~   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDL--GPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL---PGPISGAP-V   73 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEEC--SSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC---SSCGGSGE-E
T ss_pred             CCEEEEEECCCCCEEEEEEC--CCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec---ccccccee-e
Confidence            68899999988888887532  11111111 11 222566677778999999999877754322222   22221111 1


Q ss_pred             CCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCc--cC-eeEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 018675          128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA--QD-VKMVQWHPTMDVLFSCSYDNTIKVWWAEDT  195 (352)
Q Consensus       128 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~--~~-v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~  195 (352)
                      ..+..++.+..|+.+..+|...++..-..  .....  .. .........+..++.+..++.+..+|....
T Consensus        74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG  142 (238)
T PF13360_consen   74 VDGGRVYVGTSDGSLYALDAKTGKVLWSI--YLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG  142 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSCEEEEE--EE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT
T ss_pred             ecccccccccceeeeEecccCCcceeeee--ccccccccccccccCceEecCEEEEEeccCcEEEEecCCC
Confidence            23455666778889999998777643221  11111  11 111222223677888888999999976543

...

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.49  E-value=0.61  Score=44.11  Aligned_cols=119  Identities=5%  Similarity=-0.074  Sum_probs=63.4

Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEcCCcccccc
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQS  250 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~  250 (352)
                      .+++++...  .++.|.+.|..............+..     ......+.++|||++++.+ ..++++.|.|+...+...
T Consensus       285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-----GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-----PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-----CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence            346665554  35778888765411111222333332     2345568999999987755 568999999986433211


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccC
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK  298 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~  298 (352)
                      ...+. .+..-.-...-........|++++ .+.+..-|..+..|....
T Consensus       358 ~~~~~-~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        358 DGKIK-PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hccCC-ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            11110 000000001112334445666665 455666788888887543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.48  E-value=0.57  Score=41.56  Aligned_cols=71  Identities=7%  Similarity=-0.030  Sum_probs=34.3

Q ss_pred             cEEEEeeCCCeEEEE--ecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeec
Q 018675           40 PVFASCSGDKTVRIW--EQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE  115 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w--~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~  115 (352)
                      ++|+.+..|+.-.+|  |+.+++.    .+...... .......++|+.+.+.-......+.-.|..+.+...+..+.
T Consensus        49 kllF~s~~dg~~nly~lDL~t~~i----~QLTdg~g-~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   49 KLLFASDFDGNRNLYLLDLATGEI----TQLTDGPG-DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             EEEEEE-TTSS-EEEEEETTT-EE----EE---SS--B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             EEEEEeccCCCcceEEEEcccCEE----EECccCCC-CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            677777778877777  5555432    22221111 11223456788887766555567777777776655555443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.41  E-value=0.17  Score=49.37  Aligned_cols=134  Identities=10%  Similarity=0.060  Sum_probs=84.8

Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCC-eeEEEECCC-------CcEEEEeeCCCcEEEEecCCCCeeEEEE-E--eecC
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENE-VKSVSWNAS-------GTLLATCGRDKSVWIWEVMPGNEFECVS-V--LQGH  162 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~-v~~v~~~~~-------~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~--~~~h  162 (352)
                      ....+.-.|...++  .+..++.|... |..+  .|+       ....+.|-.++.+..||.+.... +++. .  ....
T Consensus       502 ~~~~ly~mDLe~GK--VV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k~Y~~  576 (794)
T PF08553_consen  502 NPNKLYKMDLERGK--VVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSKQYSS  576 (794)
T ss_pred             CCCceEEEecCCCc--EEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCC-ceeecccccccc
Confidence            34566666777774  35555555543 5444  342       33455677778899999876432 2221 1  1123


Q ss_pred             ccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEc
Q 018675          163 AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG  242 (352)
Q Consensus       163 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd  242 (352)
                      .....|++-..+| ++|.|+.+|.||+|+-....      .++   ...+.+.+|..|+.+.||+++++.+ +..+.+++
T Consensus       577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~------AKT---~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~  645 (794)
T PF08553_consen  577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR------AKT---ALPGLGDPIIGIDVTADGKWILATC-KTYLLLID  645 (794)
T ss_pred             CCCceEEEecCCc-eEEEEeCCCcEEeecccchh------hhh---cCCCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence            3456777776666 68999999999999632211      112   2236679999999999999887665 45677776


Q ss_pred             C
Q 018675          243 A  243 (352)
Q Consensus       243 ~  243 (352)
                      .
T Consensus       646 t  646 (794)
T PF08553_consen  646 T  646 (794)
T ss_pred             E
Confidence            5

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.40  E-value=0.71  Score=41.73  Aligned_cols=205  Identities=12%  Similarity=0.139  Sum_probs=107.9

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceee---------------------------------------
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFW---------------------------------------   63 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~---------------------------------------   63 (352)
                      .|+.+.|.+..      ..|+.+-..|.|-||.+..++...                                       
T Consensus         3 ~v~~vs~a~~t------~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf   76 (395)
T PF08596_consen    3 SVTHVSFAPET------LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGF   76 (395)
T ss_dssp             -EEEEEEETTT------TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEE
T ss_pred             eEEEEEecCCC------ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCccccccc
Confidence            57888898863      468888899999998754332110                                       


Q ss_pred             eeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeecc------ccCCeeEEEEC-----CCC--
Q 018675           64 NCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG------HENEVKSVSWN-----ASG--  130 (352)
Q Consensus        64 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~------h~~~v~~v~~~-----~~~--  130 (352)
                      .+...+ ....++|++++.| |=.++|.|..+|.+.|.|.++........+..      ....|+++.|.     .++  
T Consensus        77 ~P~~l~-~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   77 LPLTLL-DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             EEEEEE----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             Cchhhe-eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence            000111 1246789999987 66789999999999999986654433333333      23468888885     122  


Q ss_pred             -cEEEEeeCCCcEEEEecCCC--CeeE--EEEEeecCccCeeEEE-EcCC--------------------CCEEEEEeCC
Q 018675          131 -TLLATCGRDKSVWIWEVMPG--NEFE--CVSVLQGHAQDVKMVQ-WHPT--------------------MDVLFSCSYD  184 (352)
Q Consensus       131 -~~l~s~~~d~~v~vwd~~~~--~~~~--~~~~~~~h~~~v~~~~-~~~~--------------------~~~l~s~~~d  184 (352)
                       -.++.|...|.+.+|.+.+.  ..+.  .......+...+..+. +..+                    .+.++....+
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe  234 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE  234 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence             36888889999999988632  1111  1112223334444332 2110                    1234455567


Q ss_pred             CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEE-----cCCCCEEEEEeCCCcEEEEcCC
Q 018675          185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF-----NAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       185 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~-----~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      ..++++.....     +..+....    ......++.+     ...+..|++-..+|.++++.+.
T Consensus       235 ~~irv~~~~~~-----k~~~K~~~----~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP  290 (395)
T PF08596_consen  235 SDIRVFKPPKS-----KGAHKSFD----DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP  290 (395)
T ss_dssp             SEEEEE-TT--------EEEEE-S----S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred             cceEEEeCCCC-----cccceeec----cccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence            78899854332     11111110    1112223333     2345668888899999999864

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.34  E-value=0.43  Score=45.38  Aligned_cols=109  Identities=15%  Similarity=0.330  Sum_probs=70.6

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEEC--CCCcEEEEeeCCCcEEEEecC------CCC
Q 018675           80 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN--ASGTLLATCGRDKSVWIWEVM------PGN  151 (352)
Q Consensus        80 ~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~~~l~s~~~d~~v~vwd~~------~~~  151 (352)
                      +.-|.-++..++-+....+.|||...+..+....+ ...+.|..+.|.  |+++.+++.|..+.|.++.-.      .++
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            33444455544444456789999877754444444 346789999994  688999999999999998531      122


Q ss_pred             eeEEEEE--eecCc-cCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 018675          152 EFECVSV--LQGHA-QDVKMVQWHPTMDVLFSCSYDNTIKVWW  191 (352)
Q Consensus       152 ~~~~~~~--~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~iw~  191 (352)
                      .+..+..  +..|+ .+|.+..|.++|..++.+  ++.+.|++
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d  154 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD  154 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence            2222222  23344 578889999998765543  46777774

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.31  E-value=0.56  Score=39.66  Aligned_cols=169  Identities=15%  Similarity=0.226  Sum_probs=104.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE  154 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  154 (352)
                      ..+.++.|+|+.+.|.+......-.++-...|+......+.+. .....+.+..++.+.++-=.++.+.++.+.......
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            4489999999999998888887777776556654333344442 334567777777777777778888888765443211


Q ss_pred             EE-------EEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCC-CceeEeeeeccCCCCcccEEEEEEcCC-
Q 018675          155 CV-------SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD-NWHCVQTISESNNGHSSTIWALSFNAK-  225 (352)
Q Consensus       155 ~~-------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~l~~~~~-  225 (352)
                      ..       ......+...-.++|.|.+..|+.+-+-+=+.||........ .............-.-..|.++.|++. 
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~  244 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAIT  244 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCC
Confidence            11       111112445678999999999999988887888865432211 000000000011112345667888864 


Q ss_pred             CCEEEEEeCCCcEEEEcCC
Q 018675          226 GDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       226 ~~~l~s~~~dg~i~iwd~~  244 (352)
                      +.+|+-+.+++.+.-.|..
T Consensus       245 ~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         245 NSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             CcEEEEecCCceEEEEecC
Confidence            6667777778877777654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=0.024  Score=55.48  Aligned_cols=103  Identities=16%  Similarity=0.218  Sum_probs=65.7

Q ss_pred             CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccC
Q 018675           86 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD  165 (352)
Q Consensus        86 ~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~  165 (352)
                      +..++.|+..|.+...|..+ +..+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+.........
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~-nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTG-NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhc-ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            44577777777777766543 22221111123578999999999999999999999999999876654443322222233


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEe
Q 018675          166 VKMVQWHPTMDVLFSCSYDNTIKVWW  191 (352)
Q Consensus       166 v~~~~~~~~~~~l~s~~~d~~i~iw~  191 (352)
                      +..+.+..++..++++...|.  +|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEE
Confidence            444455555666777766665  453

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.25  E-value=0.86  Score=41.21  Aligned_cols=172  Identities=10%  Similarity=0.094  Sum_probs=90.0

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeee-e--eecceecceEEEEECC----
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA-V--LEEMHTRTVRSCAWSP----   84 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~-~--~~~~h~~~v~~~~~s~----   84 (352)
                      .+..-+....+.|++++.+.-       -++|.|..||++.|.|+..+..++...- .  ........|+++.|+.    
T Consensus        77 ~P~~l~~~~~g~vtal~~S~i-------GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~  149 (395)
T PF08596_consen   77 LPLTLLDAKQGPVTALKNSDI-------GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG  149 (395)
T ss_dssp             EEEEEE---S-SEEEEEE-BT-------SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred             CchhheeccCCcEeEEecCCC-------cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC
Confidence            444455566899999998643       4899999999999999977665544211 0  1112345677887752    


Q ss_pred             -CC---CEEEEEeCCCcEEEEEccC---Ccee--eeEeeccccCCeeEEE-ECCC---------------------CcEE
Q 018675           85 -SG---KLLATASFDATTCIWEDVG---GDYE--CVATLEGHENEVKSVS-WNAS---------------------GTLL  133 (352)
Q Consensus        85 -~~---~~l~s~~~d~~i~i~~~~~---~~~~--~~~~~~~h~~~v~~v~-~~~~---------------------~~~l  133 (352)
                       |+   -.+++|...|.+.+|....   +.+.  .......+.+.|..+. ++.+                     ..++
T Consensus       150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v  229 (395)
T PF08596_consen  150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV  229 (395)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred             CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence             33   4688899999999996541   2222  1112224556666554 3221                     1144


Q ss_pred             EEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEc-----CCCCEEEEEeCCCcEEEEecCC
Q 018675          134 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH-----PTMDVLFSCSYDNTIKVWWAED  194 (352)
Q Consensus       134 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~s~~~d~~i~iw~~~~  194 (352)
                      +.++ +..++++.....+.   .+........+..+.+-     ..+..|++-..+|.+++|.+..
T Consensus       230 VvvS-e~~irv~~~~~~k~---~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~  291 (395)
T PF08596_consen  230 VVVS-ESDIRVFKPPKSKG---AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS  291 (395)
T ss_dssp             EEE--SSEEEEE-TT---E---EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred             EEEc-ccceEEEeCCCCcc---cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence            4444 56799988754432   22222221122233332     2455678888999999997654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.24  E-value=0.17  Score=46.74  Aligned_cols=126  Identities=17%  Similarity=0.374  Sum_probs=75.2

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCc---eeeeeeeeeecceecce--EEEEECCCCCEEEEEe
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS---RFWNCKAVLEEMHTRTV--RSCAWSPSGKLLATAS   93 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~---~~~~~~~~~~~~h~~~v--~~~~~s~~~~~l~s~~   93 (352)
                      |.-+-|.++.|.|-...  ..+.++...-.+.|.+|.+....   ..+...+.-+....-+|  ..|-|+|....|+.=.
T Consensus        54 GqFEhV~GlsW~P~~~~--~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT  131 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTA--DTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT  131 (671)
T ss_pred             eccceeeeeeecCcccC--CCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence            56678999999996432  23456666778999999875221   11111111111111122  4577999988877655


Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEee-CCCcEEEEec
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEV  147 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~vwd~  147 (352)
                      ....-.+++...........++ -.+.|.|.+|.+||++|+.+- ..-.-.+||-
T Consensus       132 ~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             cCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            5444445554433333334443 467899999999999876553 3345568884

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.22  E-value=0.38  Score=45.94  Aligned_cols=163  Identities=17%  Similarity=0.200  Sum_probs=85.3

Q ss_pred             cceEEEEECCCCCEEEEEe------CCCcEEEEEcc-CCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCc-EEEEe
Q 018675           75 RTVRSCAWSPSGKLLATAS------FDATTCIWEDV-GGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS-VWIWE  146 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~------~d~~i~i~~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-v~vwd  146 (352)
                      ..+.+.+++|+|+.++...      .|..-.||-.. .+....+  ..+  .....-.|+|+|..+.+.+.... +++.+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence            3577889999999887665      34445566432 2222221  223  23778899999887777654322 22222


Q ss_pred             cCCCCeeEEEEE----ee-cCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEE
Q 018675          147 VMPGNEFECVSV----LQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS  221 (352)
Q Consensus       147 ~~~~~~~~~~~~----~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~  221 (352)
                      -........+..    .. .....|..+.|+||+..++... ++.|.+--+....... ..+........+-...+.++.
T Consensus       426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccce
Confidence            111111100000    00 1234699999999999877655 4666553222222221 111111111112334467899


Q ss_pred             EcCCCCEEEEEeCCCcEEEEcCC
Q 018675          222 FNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       222 ~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      |.+++.++ .+..++...+|-+.
T Consensus       504 W~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        504 WRTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             EecCCEEE-EEecCCCCceEEEe
Confidence            99998855 55555555566443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.18  E-value=0.062  Score=52.22  Aligned_cols=102  Identities=9%  Similarity=0.059  Sum_probs=69.0

Q ss_pred             EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccc
Q 018675          229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYK  308 (352)
Q Consensus       229 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~  308 (352)
                      -..|-.++.+-.||.++....     ..+.+...+.  ......+++.+.+|++|.|+.+|.|++|+...         +
T Consensus       545 tflGls~n~lfriDpR~~~~k-----~v~~~~k~Y~--~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g---------~  608 (794)
T PF08553_consen  545 TFLGLSDNSLFRIDPRLSGNK-----LVDSQSKQYS--SKNNFSCFATTEDGYIAVGSNKGDIRLYDRLG---------K  608 (794)
T ss_pred             eEEEECCCceEEeccCCCCCc-----eeeccccccc--cCCCceEEEecCCceEEEEeCCCcEEeecccc---------h
Confidence            455777888999998753210     0011111111  23446677888899999999999999996321         1


Q ss_pred             eeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          309 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       309 ~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      .....+.+-..+|.+|..+.||+++||||  +..|.|++.
T Consensus       609 ~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t  646 (794)
T PF08553_consen  609 RAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT  646 (794)
T ss_pred             hhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence            11223446678999999999999999888  567877775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.18  E-value=0.6  Score=38.75  Aligned_cols=182  Identities=12%  Similarity=0.052  Sum_probs=99.7

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccC
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHEN  119 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~  119 (352)
                      ..++.++.++.+..||..+++..|+....- ... ..    . ..++..++.+..++.+..+|..+++.. .........
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~-~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~-W~~~~~~~~  108 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDLPG-PIS-GA----P-VVDGGRVYVGTSDGSLYALDAKTGKVL-WSIYLTSSP  108 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEECSS-CGG-SG----E-EEETTEEEEEETTSEEEEEETTTSCEE-EEEEE-SSC
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccc-ce----e-eecccccccccceeeeEecccCCccee-eeecccccc
Confidence            567777899999999999988777654311 111 11    1 113455666668888989987777542 221111111


Q ss_pred             --C-eeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccC----------eeEEEEcCCCCEEEEEeCCCc
Q 018675          120 --E-VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD----------VKMVQWHPTMDVLFSCSYDNT  186 (352)
Q Consensus       120 --~-v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~l~s~~~d~~  186 (352)
                        . .........++.++.+..++.|..+|+..++.   +.........          +..-....++ .++.++.++.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~  184 (238)
T PF13360_consen  109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL---LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGR  184 (238)
T ss_dssp             TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE---EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSS
T ss_pred             ccccccccCceEecCEEEEEeccCcEEEEecCCCcE---EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCe
Confidence              1 11112222367788888899999999877653   2222222211          1111122233 6667777775


Q ss_pred             EEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          187 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       187 i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      +..++....... |      ....    ..+.. ...+++..|+.++.++.|..||++.
T Consensus       185 ~~~~d~~tg~~~-w------~~~~----~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  185 VVAVDLATGEKL-W------SKPI----SGIYS-LPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             EEEEETTTTEEE-E------EECS----S-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred             EEEEECCCCCEE-E------EecC----CCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence            333366543210 1      1011    11222 1346677888888999999999764

...

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.17  E-value=0.018  Score=34.21  Aligned_cols=30  Identities=23%  Similarity=0.446  Sum_probs=27.8

Q ss_pred             cCCeeEEEECCCCcEEEEeeCCCcEEEEec
Q 018675          118 ENEVKSVSWNASGTLLATCGRDKSVWIWEV  147 (352)
Q Consensus       118 ~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~  147 (352)
                      ...|.+++|+|..++||.+..||.|.++++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            456999999999999999999999999997

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.15  E-value=0.82  Score=43.25  Aligned_cols=75  Identities=13%  Similarity=0.136  Sum_probs=49.8

Q ss_pred             CCeeEEEECCCCcEEEEee-CCCcEEEEecCCCCe-----eE----EEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEE
Q 018675          119 NEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGNE-----FE----CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK  188 (352)
Q Consensus       119 ~~v~~v~~~~~~~~l~s~~-~d~~v~vwd~~~~~~-----~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~  188 (352)
                      ...+.+.++|||++++.++ .+.++.|.|+.....     .+    .+....- ...-...+|.+++....+.--|..|.
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~  399 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIV  399 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeE
Confidence            4567889999999866554 589999999864321     00    1111111 11223567888888777888899999


Q ss_pred             EEecCC
Q 018675          189 VWWAED  194 (352)
Q Consensus       189 iw~~~~  194 (352)
                      .|++..
T Consensus       400 kwn~~~  405 (635)
T PRK02888        400 KWNIEA  405 (635)
T ss_pred             EEehHH
Confidence            998754

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.14  E-value=0.85  Score=40.08  Aligned_cols=155  Identities=6%  Similarity=0.106  Sum_probs=89.9

Q ss_pred             eEEEEECCC----CCEEEEEeC----------CCcEEEEEccCC-----ceeeeEeeccccCCeeEEEECCCCcEEEEee
Q 018675           77 VRSCAWSPS----GKLLATASF----------DATTCIWEDVGG-----DYECVATLEGHENEVKSVSWNASGTLLATCG  137 (352)
Q Consensus        77 v~~~~~s~~----~~~l~s~~~----------d~~i~i~~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~  137 (352)
                      +..+.|..+    ..+++.|..          .|.+.+++....     +.+.+... ...++|.+++-. .+. |+.+.
T Consensus        29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~  105 (321)
T PF03178_consen   29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR-LVVAV  105 (321)
T ss_dssp             EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE
T ss_pred             EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE-EEEee
Confidence            334445543    356666642          177888887653     33333332 357889988755 344 44443


Q ss_pred             CCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccE
Q 018675          138 RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI  217 (352)
Q Consensus       138 ~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i  217 (352)
                       .+.|.+|++...........+..+. .++++...  +++++.|.....+.++..... ...   +..+..  +.....+
T Consensus       106 -g~~l~v~~l~~~~~l~~~~~~~~~~-~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~-~~~---l~~va~--d~~~~~v  175 (321)
T PF03178_consen  106 -GNKLYVYDLDNSKTLLKKAFYDSPF-YITSLSVF--KNYILVGDAMKSVSLLRYDEE-NNK---LILVAR--DYQPRWV  175 (321)
T ss_dssp             -TTEEEEEEEETTSSEEEEEEE-BSS-SEEEEEEE--TTEEEEEESSSSEEEEEEETT-TE----EEEEEE--ESS-BEE
T ss_pred             -cCEEEEEEccCcccchhhheecceE-EEEEEecc--ccEEEEEEcccCEEEEEEEcc-CCE---EEEEEe--cCCCccE
Confidence             3789999987665233333333322 45555544  558889988888887744331 111   112211  1234568


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          218 WALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       218 ~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      .++.|-++++.++.+..+|.+.++..+
T Consensus       176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  176 TAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            888887666799999999999999764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.95  E-value=0.73  Score=43.95  Aligned_cols=180  Identities=16%  Similarity=0.286  Sum_probs=89.1

Q ss_pred             CCCEEEEEeCCC------cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCC------CcEEEEecCCCCe
Q 018675           85 SGKLLATASFDA------TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD------KSVWIWEVMPGNE  152 (352)
Q Consensus        85 ~~~~l~s~~~d~------~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------~~v~vwd~~~~~~  152 (352)
                      .+.+++.|+.++      ++..||..++.+.....+..... -.+++. -.+...++||.|      .++..||..... 
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-  360 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQ-  360 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEE-ECCEEEEEccccCCCcccceEEEecCCCCc-
Confidence            456677777773      56678777665555544442222 223333 245778888888      355667754433 


Q ss_pred             eEEEEEeecCccCeeEEEEcCCCCEEEEEeCCC-----cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC
Q 018675          153 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN-----TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD  227 (352)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~  227 (352)
                      +..+..+..........  .-++.+.++|+.||     ++..||.   ..+.|...........+|.    ...  -+|.
T Consensus       361 W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp---~~~~W~~va~m~~~r~~~g----v~~--~~g~  429 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDP---VTNKWTPVAPMLTRRSGHG----VAV--LGGK  429 (571)
T ss_pred             eeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecC---CCCcccccCCCCcceeeeE----EEE--ECCE
Confidence            22222211111111111  12566778888886     3555643   3344544433322111221    112  3577


Q ss_pred             EEEEEeCCCc------EEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCC
Q 018675          228 KLVSCSDDLT------IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD  289 (352)
Q Consensus       228 ~l~s~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~  289 (352)
                      ..+.||.++.      +..||..         ...|+....+..  ...-..++.-.+.+++.|+.|+
T Consensus       430 iYi~GG~~~~~~~l~sve~YDP~---------t~~W~~~~~M~~--~R~~~g~a~~~~~iYvvGG~~~  486 (571)
T KOG4441|consen  430 LYIIGGGDGSSNCLNSVECYDPE---------TNTWTLIAPMNT--RRSGFGVAVLNGKIYVVGGFDG  486 (571)
T ss_pred             EEEEcCcCCCccccceEEEEcCC---------CCceeecCCccc--ccccceEEEECCEEEEECCccC
Confidence            8888886664      4445432         134554433321  1122234444556777777776

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.93  E-value=0.03  Score=33.29  Aligned_cols=31  Identities=13%  Similarity=0.221  Sum_probs=27.8

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          214 SSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       214 ~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      ...|..++|+|+.+++|.+..+|.|.++.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.87  E-value=0.46  Score=43.61  Aligned_cols=156  Identities=20%  Similarity=0.253  Sum_probs=75.6

Q ss_pred             cCCccceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC
Q 018675            5 DDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP   84 (352)
Q Consensus         5 ~~~~~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~   84 (352)
                      .||+...-....+....-....+.++|+      +.+++. .+||.-.|+......    .+      ..+.-....|.+
T Consensus        16 ~dg~~~~l~~k~lg~~~~~p~~ls~npn------gr~v~V-~g~geY~iyt~~~~r----~k------~~G~g~~~vw~~   78 (443)
T PF04053_consen   16 KDGERLPLSVKELGSCEIYPQSLSHNPN------GRFVLV-CGDGEYEIYTALAWR----NK------AFGSGLSFVWSS   78 (443)
T ss_dssp             -TTS-B----EEEEE-SS--SEEEE-TT------SSEEEE-EETTEEEEEETTTTE----EE------EEEE-SEEEE-T
T ss_pred             CCCceeeEEeccCCCCCcCCeeEEECCC------CCEEEE-EcCCEEEEEEccCCc----cc------ccCceeEEEEec
Confidence            3444333333444334445678999997      355555 568888888733211    11      124456677988


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCcc
Q 018675           85 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ  164 (352)
Q Consensus        85 ~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~  164 (352)
                      .++ +|+-...++|.++.....  .....++- ...+..+-  + |.+|+..+.+ .|.+||...++.   +..+.  ..
T Consensus        79 ~n~-yAv~~~~~~I~I~kn~~~--~~~k~i~~-~~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~---i~~i~--v~  145 (443)
T PF04053_consen   79 RNR-YAVLESSSTIKIYKNFKN--EVVKSIKL-PFSVEKIF--G-GNLLGVKSSD-FICFYDWETGKL---IRRID--VS  145 (443)
T ss_dssp             SSE-EEEE-TTS-EEEEETTEE---TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--E---EEEES--S-
T ss_pred             Ccc-EEEEECCCeEEEEEcCcc--ccceEEcC-CcccceEE--c-CcEEEEECCC-CEEEEEhhHcce---eeEEe--cC
Confidence            555 555556888999743221  11111211 11233332  2 7777666554 799999976543   33333  23


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 018675          165 DVKMVQWHPTMDVLFSCSYDNTIKVWW  191 (352)
Q Consensus       165 ~v~~~~~~~~~~~l~s~~~d~~i~iw~  191 (352)
                      +|..+-|++++.+++..+.+ .+.|++
T Consensus       146 ~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  146 AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            47899999999998887755 566664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.69  E-value=0.69  Score=44.04  Aligned_cols=101  Identities=14%  Similarity=0.416  Sum_probs=64.7

Q ss_pred             EEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEEC--CCCCEEEEEeCCCcEEEEEccC-------Cceeee
Q 018675           41 VFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWS--PSGKLLATASFDATTCIWEDVG-------GDYECV  111 (352)
Q Consensus        41 ~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~~~d~~i~i~~~~~-------~~~~~~  111 (352)
                      ..+.-+.-.++.|||.....-.  ....+  ...+.|.++.|.  |+|+.+++.+..+.|.+|-...       ..+.++
T Consensus        43 ~a~V~~~~~~LtIWD~~~~~lE--~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i  118 (631)
T PF12234_consen   43 IAVVDSSRSELTIWDTRSGVLE--YEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI  118 (631)
T ss_pred             EEEEECCCCEEEEEEcCCcEEE--Eeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence            3333334467999998765311  11111  236789999984  6899999999999999985421       111222


Q ss_pred             Ee--ecccc-CCeeEEEECCCCcEEEEeeCCCcEEEEec
Q 018675          112 AT--LEGHE-NEVKSVSWNASGTLLATCGRDKSVWIWEV  147 (352)
Q Consensus       112 ~~--~~~h~-~~v~~v~~~~~~~~l~s~~~d~~v~vwd~  147 (352)
                      ..  +..|+ .+|.+..|.++|.+++++|  +.+.|+|-
T Consensus       119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  119 RKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             EEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            22  23344 5788999999998776655  56778773

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.62  E-value=1.3  Score=42.37  Aligned_cols=179  Identities=15%  Similarity=0.243  Sum_probs=88.8

Q ss_pred             ccEEEEeeCC------CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC-C-----cEEEEEccCC
Q 018675           39 APVFASCSGD------KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD-A-----TTCIWEDVGG  106 (352)
Q Consensus        39 ~~~l~s~s~D------~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-~-----~i~i~~~~~~  106 (352)
                      +.+++.||.+      ..+..+|..++.  |.......  ....-.+++.- ++.+.++||.| +     ++-.||...+
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~--w~~~a~m~--~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNE--WSSLAPMP--SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCc--EeecCCCC--cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence            3566777766      367777776552  32211111  12222233333 56888899988 3     4556777666


Q ss_pred             ceeeeEeeccccCCeeEEEECCCCcEEEEeeCCC-----cEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEE
Q 018675          107 DYECVATLEGHENEVKSVSWNASGTLLATCGRDK-----SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC  181 (352)
Q Consensus       107 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  181 (352)
                      ++.....+.......-..  .-+|...+.||.||     ++-.||.... .+..+............+  .-.+.+.+.|
T Consensus       360 ~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~-~W~~va~m~~~r~~~gv~--~~~g~iYi~G  434 (571)
T KOG4441|consen  360 QWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTN-KWTPVAPMLTRRSGHGVA--VLGGKLYIIG  434 (571)
T ss_pred             ceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCC-cccccCCCCcceeeeEEE--EECCEEEEEc
Confidence            655444343222222111  12567788888886     3555664322 222221111101111111  2256667777


Q ss_pred             eCCC------cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCC
Q 018675          182 SYDN------TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL  236 (352)
Q Consensus       182 ~~d~------~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg  236 (352)
                      |.++      ++..||.   ..+.|...........+|.  +   +. -++...+.||.|+
T Consensus       435 G~~~~~~~l~sve~YDP---~t~~W~~~~~M~~~R~~~g--~---a~-~~~~iYvvGG~~~  486 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDP---ETNTWTLIAPMNTRRSGFG--V---AV-LNGKIYVVGGFDG  486 (571)
T ss_pred             CcCCCccccceEEEEcC---CCCceeecCCcccccccce--E---EE-ECCEEEEECCccC
Confidence            7655      4556643   4455655544443333333  1   11 2467778888777

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.61  E-value=1.1  Score=40.01  Aligned_cols=89  Identities=15%  Similarity=0.365  Sum_probs=51.0

Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec-------C------
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG-------H------  162 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-------h------  162 (352)
                      +.+.+||..++....+..   ....+....|+|+|+.++-.. ++.|.++++..+.... + +..+       -      
T Consensus        23 ~~y~i~d~~~~~~~~l~~---~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~-l-T~dg~~~i~nG~~dwvye   96 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTP---PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ-L-TTDGEPGIYNGVPDWVYE   96 (353)
T ss_dssp             EEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE-S-ES--TTTEEESB--HHHH
T ss_pred             eeEEEEecCCCceEECcC---CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE-e-ccccceeEEcCccceecc
Confidence            457788887765433322   256788999999999988775 4678888865442111 1 1111       0      


Q ss_pred             ---ccCeeEEEEcCCCCEEEEEeC-CCcEEEE
Q 018675          163 ---AQDVKMVQWHPTMDVLFSCSY-DNTIKVW  190 (352)
Q Consensus       163 ---~~~v~~~~~~~~~~~l~s~~~-d~~i~iw  190 (352)
                         -..-..+-|+|+++.|+.... ++.++.+
T Consensus        97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~  128 (353)
T PF00930_consen   97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY  128 (353)
T ss_dssp             HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred             ccccccccceEECCCCCEEEEEEECCcCCceE
Confidence               011235779999998876654 3445544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.44  E-value=1.1  Score=40.99  Aligned_cols=123  Identities=19%  Similarity=0.162  Sum_probs=64.8

Q ss_pred             eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE-eCCCcEEEE--EccCCceeeeEeeccccCCeeEEEE
Q 018675           50 TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA-SFDATTCIW--EDVGGDYECVATLEGHENEVKSVSW  126 (352)
Q Consensus        50 ~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~d~~i~i~--~~~~~~~~~~~~~~~h~~~v~~v~~  126 (352)
                      .+.++++.++.......      -.+.-..-+|+|||+.|+-. ..|+...||  |..++...   .+..-.+.-..-.|
T Consensus       219 ~i~~~~l~~g~~~~i~~------~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~---~Lt~~~gi~~~Ps~  289 (425)
T COG0823         219 RIYYLDLNTGKRPVILN------FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGINTSPSW  289 (425)
T ss_pred             eEEEEeccCCccceeec------cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce---ecccCCccccCccC
Confidence            47777776654321111      12233445899999877644 456766655  44443322   13222222235678


Q ss_pred             CCCCcEEEEee-CCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC
Q 018675          127 NASGTLLATCG-RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY  183 (352)
Q Consensus       127 ~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  183 (352)
                      +|+|+.++-.+ ..|.-.+|-...........+...  ..-..-.|+|+++.++..+.
T Consensus       290 spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~--~~~~~p~~SpdG~~i~~~~~  345 (425)
T COG0823         290 SPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG--GGNSNPVWSPDGDKIVFESS  345 (425)
T ss_pred             CCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC--CCCcCccCCCCCCEEEEEec
Confidence            99999866554 455555554432222111112222  22225578999998876664

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.40  E-value=0.076  Score=52.16  Aligned_cols=99  Identities=17%  Similarity=0.233  Sum_probs=64.9

Q ss_pred             EEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCC
Q 018675           41 VFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENE  120 (352)
Q Consensus        41 ~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~  120 (352)
                      .++.|+.-|.+-..|+..+-.    .....+.-.++|++++|+.+|+.++.|-.+|-|.+||..+++.  ...+..|..+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~----~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~--l~~i~e~~ap  174 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLG----PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI--LKVITEHGAP  174 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccc----hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc--eeeeeecCCc
Confidence            466666777777766543211    0111122357999999999999999999999999999887643  3344444444


Q ss_pred             ee---EEEECCCCcEEEEeeCCCcEEEEec
Q 018675          121 VK---SVSWNASGTLLATCGRDKSVWIWEV  147 (352)
Q Consensus       121 v~---~v~~~~~~~~l~s~~~d~~v~vwd~  147 (352)
                      +.   -+.+..++..++++..-|.  +|.+
T Consensus       175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            33   3444455557777777775  6664

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.28  E-value=0.084  Score=42.67  Aligned_cols=104  Identities=13%  Similarity=0.107  Sum_probs=54.5

Q ss_pred             CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCc-c
Q 018675           86 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA-Q  164 (352)
Q Consensus        86 ~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~-~  164 (352)
                      +.-++.|+.+|.+.+|........+-....+.+...+-|.--.++.+..+++.|+.|+.|.+.+.+..   .....|. .
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~---g~~g~h~~~  146 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL---GYVGQHNFE  146 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCcee---eeeccccCC
Confidence            46788899999999986531110000000111111222222235567889999999999998776532   2223344 3


Q ss_pred             CeeEEEEcCCCCEEEEE--eCCCcEEEEec
Q 018675          165 DVKMVQWHPTMDVLFSC--SYDNTIKVWWA  192 (352)
Q Consensus       165 ~v~~~~~~~~~~~l~s~--~~d~~i~iw~~  192 (352)
                      ++..+.....+..+..+  |.|..++.|++
T Consensus       147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  147 SGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             CcceeEEecCCceEEeeccccchhhhhcch
Confidence            33333333334444444  55555555544

>PHA02713 hypothetical protein; Provisional

Probab=95.19  E-value=1.5  Score=41.74  Aligned_cols=146  Identities=8%  Similarity=0.110  Sum_probs=71.1

Q ss_pred             CCCEEEEEeCCC-----cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCC-------------------
Q 018675           85 SGKLLATASFDA-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK-------------------  140 (352)
Q Consensus        85 ~~~~l~s~~~d~-----~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-------------------  140 (352)
                      +|++.+.||.++     ++..||..++.+.....+.........+.  -++...+.||.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence            678888888764     36778877766554433322211122222  2566667776542                   


Q ss_pred             ----cEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCC------cEEEEecCCCCCCCceeEeeeeccC
Q 018675          141 ----SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN------TIKVWWAEDTDSDNWHCVQTISESN  210 (352)
Q Consensus       141 ----~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~------~i~iw~~~~~~~~~~~~~~~~~~~~  210 (352)
                          ++..||.... .+..+..+....... +++ .-++.+.+.|+.++      .+..||...  .+.|.....+....
T Consensus       429 ~~~~~ve~YDP~td-~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~--~~~W~~~~~m~~~r  503 (557)
T PHA02713        429 HSSNKVIRYDTVNN-IWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNT--YNGWELITTTESRL  503 (557)
T ss_pred             cccceEEEECCCCC-eEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCC--CCCeeEccccCccc
Confidence                3556665432 222222111111111 111 12455556666542      355675432  13566554443222


Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCC--cEEEEcC
Q 018675          211 NGHSSTIWALSFNAKGDKLVSCSDDL--TIKIWGA  243 (352)
Q Consensus       211 ~~h~~~i~~l~~~~~~~~l~s~~~dg--~i~iwd~  243 (352)
                      ..    ...+.+  ++...+.||.||  .+-.||.
T Consensus       504 ~~----~~~~~~--~~~iyv~Gg~~~~~~~e~yd~  532 (557)
T PHA02713        504 SA----LHTILH--DNTIMMLHCYESYMLQDTFNV  532 (557)
T ss_pred             cc----ceeEEE--CCEEEEEeeecceeehhhcCc
Confidence            21    222222  578888999888  4555543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.14  E-value=2.5  Score=38.41  Aligned_cols=262  Identities=12%  Similarity=0.113  Sum_probs=124.2

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccC
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHEN  119 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~  119 (352)
                      ..++.++.++.+.-+|..+++..|+....- .....++.      .+..++.+..++.+..+|..+++.. . ..... .
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v------~~~~v~v~~~~g~l~ald~~tG~~~-W-~~~~~-~  190 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV------SDGLVLVHTSNGMLQALNESDGAVK-W-TVNLD-V  190 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE------ECCEEEEECCCCEEEEEEccCCCEe-e-eecCC-C
Confidence            355666788999999999988888653211 01111111      2345566777888888888777531 1 11110 0


Q ss_pred             CeeEE--EECC--CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec---Cc-cCeeEEEEcC--CCCEEEEEeCCCcEEE
Q 018675          120 EVKSV--SWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG---HA-QDVKMVQWHP--TMDVLFSCSYDNTIKV  189 (352)
Q Consensus       120 ~v~~v--~~~~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~---h~-~~v~~~~~~~--~~~~l~s~~~d~~i~i  189 (352)
                      +...+  .-+|  .+..++.++.++.+...|...++..-.......   +. .....+..+|  .+..++.++.++.+..
T Consensus       191 ~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a  270 (394)
T PRK11138        191 PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA  270 (394)
T ss_pred             CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence            00000  0011  123455677788888888765542111100000   00 0000111122  2456677778888888


Q ss_pred             EecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCc
Q 018675          190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR  269 (352)
Q Consensus       190 w~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (352)
                      +|..... ..|+.  .+     +.   ...+.  ..+..+..++.+|.+..+|....+       ..|+... ..   ..
T Consensus       271 ld~~tG~-~~W~~--~~-----~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~-------~~W~~~~-~~---~~  326 (394)
T PRK11138        271 LDLRSGQ-IVWKR--EY-----GS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGV-------ELWSQSD-LL---HR  326 (394)
T ss_pred             EECCCCC-EEEee--cC-----CC---ccCcE--EECCEEEEEcCCCeEEEEECCCCc-------EEEcccc-cC---CC
Confidence            8765432 11211  11     00   00111  135566777788888888764321       1222110 00   00


Q ss_pred             ceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeE-EEecCCCcceEEEecCCCeEEEEee
Q 018675          270 TIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS-VQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       270 ~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      ...+... .++++..++.+|.+...+.....+         +-+.......+.+ -.+ .++ .++ .++.||.|..++.
T Consensus       327 ~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~~---------~~~~~~~~~~~~s~P~~-~~~-~l~-v~t~~G~l~~~~~  393 (394)
T PRK11138        327 LLTAPVL-YNGYLVVGDSEGYLHWINREDGRF---------VAQQKVDSSGFLSEPVV-ADD-KLL-IQARDGTVYAITR  393 (394)
T ss_pred             cccCCEE-ECCEEEEEeCCCEEEEEECCCCCE---------EEEEEcCCCcceeCCEE-ECC-EEE-EEeCCceEEEEeC
Confidence            0011111 256777888889888775543221         1111111112221 122 234 455 5788998887654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.12  E-value=0.27  Score=44.83  Aligned_cols=115  Identities=8%  Similarity=0.032  Sum_probs=72.9

Q ss_pred             EEEEEEcCCCCE-------EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCC
Q 018675          217 IWALSFNAKGDK-------LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD  289 (352)
Q Consensus       217 i~~l~~~~~~~~-------l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~  289 (352)
                      |+-+.+.|+...       -+.|-.|+.|--||.+.....    ...|.+...+..  .....++....+|+++.|+.+|
T Consensus       378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~----kl~~~q~kqy~~--k~nFsc~aTT~sG~IvvgS~~G  451 (644)
T KOG2395|consen  378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN----KLAVVQSKQYST--KNNFSCFATTESGYIVVGSLKG  451 (644)
T ss_pred             cceeeccCCcchhcccccccEEeecCCceEEecccccCcc----eeeeeecccccc--ccccceeeecCCceEEEeecCC
Confidence            666777776432       233556788888987643211    111222222221  2334566667789999999999


Q ss_pred             eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       290 ~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      .|++|+....         ....-+.+...+|..+..+.+|+++|+||  +..+.+-++
T Consensus       452 dIRLYdri~~---------~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t  499 (644)
T KOG2395|consen  452 DIRLYDRIGR---------RAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDT  499 (644)
T ss_pred             cEEeehhhhh---------hhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEE
Confidence            9999965221         11122456778999999999999888777  667776655

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.11  E-value=0.81  Score=41.85  Aligned_cols=141  Identities=11%  Similarity=0.067  Sum_probs=85.2

Q ss_pred             EEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCc-------EEEEeeCCCcEEEEecCCCCeeEEEEEeec
Q 018675           89 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-------LLATCGRDKSVWIWEVMPGNEFECVSVLQG  161 (352)
Q Consensus        89 l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-------~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  161 (352)
                      +.++.....+.-.|...|+.  +..++-+.. |+-+.+.|+..       .-+.|-.|+.|.-||.+-... ..+..-++
T Consensus       349 l~~~~~~~~l~klDIE~GKI--VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~~q~  424 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKI--VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAVVQS  424 (644)
T ss_pred             eeCCCCcCcceeeeccccee--eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeeeeec
Confidence            34455555666667777643  445554444 66677777542       223456678888899764332 12223333


Q ss_pred             Cc----cCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCc
Q 018675          162 HA----QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT  237 (352)
Q Consensus       162 h~----~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~  237 (352)
                      |.    ....|.+-..+| ++++||.+|.|++|+-...+      .+   ....+.+.+|..|..+.+|..++..+ +.+
T Consensus       425 kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~------AK---TAlPgLG~~I~hVdvtadGKwil~Tc-~ty  493 (644)
T KOG2395|consen  425 KQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRR------AK---TALPGLGDAIKHVDVTADGKWILATC-KTY  493 (644)
T ss_pred             cccccccccceeeecCCc-eEEEeecCCcEEeehhhhhh------hh---hcccccCCceeeEEeeccCcEEEEec-ccE
Confidence            33    234455544444 68999999999999642211      11   12346788999999999999877554 566


Q ss_pred             EEEEcCC
Q 018675          238 IKIWGAD  244 (352)
Q Consensus       238 i~iwd~~  244 (352)
                      +.+-++.
T Consensus       494 LlLi~t~  500 (644)
T KOG2395|consen  494 LLLIDTL  500 (644)
T ss_pred             EEEEEEe
Confidence            6666653

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.87  E-value=2.1  Score=36.21  Aligned_cols=149  Identities=19%  Similarity=0.206  Sum_probs=82.7

Q ss_pred             ceEEEEEccCCCCCCCccEEEEee-CCC--eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCS-GDK--TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTC   99 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s-~D~--~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   99 (352)
                      .+.+.+.+|+.      ..+|... .++  .+.++.......     ...   -...+..-+|++++...+....+....
T Consensus        25 ~~~s~AvS~dg------~~~A~v~~~~~~~~L~~~~~~~~~~-----~~~---~g~~l~~PS~d~~g~~W~v~~~~~~~~   90 (253)
T PF10647_consen   25 DVTSPAVSPDG------SRVAAVSEGDGGRSLYVGPAGGPVR-----PVL---TGGSLTRPSWDPDGWVWTVDDGSGGVR   90 (253)
T ss_pred             cccceEECCCC------CeEEEEEEcCCCCEEEEEcCCCcce-----eec---cCCccccccccCCCCEEEEEcCCCceE
Confidence            67788888874      3444333 333  444444332211     111   123567778999988777766666666


Q ss_pred             EEE-ccCCceeeeEee-ccccCCeeEEEECCCCcEEEEee---CCCcEEEEecCCCCee------EEEEEeecCccCeeE
Q 018675          100 IWE-DVGGDYECVATL-EGHENEVKSVSWNASGTLLATCG---RDKSVWIWEVMPGNEF------ECVSVLQGHAQDVKM  168 (352)
Q Consensus       100 i~~-~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~---~d~~v~vwd~~~~~~~------~~~~~~~~h~~~v~~  168 (352)
                      ++. ...+.......- ..-.+.|.++.++|+|..++...   .++.|.+=-+......      ............++.
T Consensus        91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~  170 (253)
T PF10647_consen   91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD  170 (253)
T ss_pred             EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence            663 223322222211 11122899999999999866554   3466666554322111      111222233457889


Q ss_pred             EEEcCCCCEEEEEeCCC
Q 018675          169 VQWHPTMDVLFSCSYDN  185 (352)
Q Consensus       169 ~~~~~~~~~l~s~~~d~  185 (352)
                      +.|.++..+++.+...+
T Consensus       171 v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  171 VAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             eeecCCCEEEEEeCCCC
Confidence            99999888766555433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.65  E-value=0.14  Score=41.45  Aligned_cols=103  Identities=10%  Similarity=0.080  Sum_probs=60.0

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEEC--CCCCEEEEEeCCCcEEEEEccCCceeeeEeecc
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWS--PSGKLLATASFDATTCIWEDVGGDYECVATLEG  116 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~  116 (352)
                      ..-++.|+.||.|.+|++.-.........   .  ......+.+.  .++.+..++..|+.|+.|....+.  .+.....
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~---s--~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k--~~g~~g~  142 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC---S--GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK--VLGYVGQ  142 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhh---c--ccccceeccccccccceeEEeccCCceeeeccccCc--eeeeecc
Confidence            35688889999999998763211100000   0  0111222222  244578889999999999876553  3344445


Q ss_pred             cc-CCeeEEEECCCCcEEEEe--eCCCcEEEEecC
Q 018675          117 HE-NEVKSVSWNASGTLLATC--GRDKSVWIWEVM  148 (352)
Q Consensus       117 h~-~~v~~v~~~~~~~~l~s~--~~d~~v~vwd~~  148 (352)
                      |+ ..+..+..+..+..++.+  |.|..++.|++.
T Consensus       143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  143 HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            65 445555555555666666  667777777763

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.44  E-value=1.2  Score=40.67  Aligned_cols=111  Identities=15%  Similarity=0.204  Sum_probs=60.9

Q ss_pred             EEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC-CCc--EEEEEc
Q 018675           27 LAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF-DAT--TCIWED  103 (352)
Q Consensus        27 i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~--i~i~~~  103 (352)
                      -.|+|+.     .+++++...|+...||-.+-..+.  ..... . ..+.-..=.|+|||+.++-.+. .|.  |.+++.
T Consensus       243 P~fspDG-----~~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt-~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~  313 (425)
T COG0823         243 PAFSPDG-----SKLAFSSSRDGSPDIYLMDLDGKN--LPRLT-N-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL  313 (425)
T ss_pred             ccCCCCC-----CEEEEEECCCCCccEEEEcCCCCc--ceecc-c-CCccccCccCCCCCCEEEEEeCCCCCcceEEECC
Confidence            5788874     367788888999888854322211  11111 0 0111124479999999887654 344  444444


Q ss_pred             cCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCC-Cc--EEEEecCC
Q 018675          104 VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-KS--VWIWEVMP  149 (352)
Q Consensus       104 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-~~--v~vwd~~~  149 (352)
                      .++... ..+..+  +.-..-.|+|+|.+++..+.. |.  |.+.|+..
T Consensus       314 ~g~~~~-riT~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         314 EGSQVT-RLTFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             CCCcee-EeeccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence            444322 222222  222267789999998877643 33  44444433

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.34  E-value=3.2  Score=39.77  Aligned_cols=107  Identities=15%  Similarity=0.202  Sum_probs=57.1

Q ss_pred             ecceEEEEECCCCCEEEEEeCCCcEEE---EEccCCceeee--Eeec-cccCCeeEEEECCCCcEEEEeeCCCcEEEEec
Q 018675           74 TRTVRSCAWSPSGKLLATASFDATTCI---WEDVGGDYECV--ATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEV  147 (352)
Q Consensus        74 ~~~v~~~~~s~~~~~l~s~~~d~~i~i---~~~~~~~~~~~--~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~  147 (352)
                      .+.|..+.|||||..++.-. ++.+.+   -....+.....  ..+. .-...+..+.|.+++.++ .+..+....+|.+
T Consensus       447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence            45799999999999887655 466655   22233432210  1122 222346889999988865 4444454556765


Q ss_pred             CCCCeeEEEEEeec--CccCeeEEEEcCCCCEEEEEeCCCc
Q 018675          148 MPGNEFECVSVLQG--HAQDVKMVQWHPTMDVLFSCSYDNT  186 (352)
Q Consensus       148 ~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~  186 (352)
                      .-.......  +.+  ...++..++-.++  .++.+..++.
T Consensus       525 ~vDG~~~~~--~~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        525 NLDGSNSDA--LPSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             ecCCccccc--cCCCCccCceEEEecCCc--eEEEEcCCce
Confidence            433322111  112  2345566665553  3444444553

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.91  E-value=3.9  Score=35.47  Aligned_cols=238  Identities=15%  Similarity=0.202  Sum_probs=103.6

Q ss_pred             ecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccc--cCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC
Q 018675           74 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGH--ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        74 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~  151 (352)
                      ..++..++|..+..-.++| ..+.|.-=.+-...+.....-...  .-...+|.|.. .+.+++ +..+ +.+.....+.
T Consensus        16 ~~~l~dV~F~d~~~G~~VG-~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~iv-G~~g-~ll~T~DgG~   91 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVG-AYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIV-GEPG-LLLHTTDGGK   91 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEE-TTTEEEEESSTTSS-EE-----S-----EEEEEEEET-TEEEEE-EETT-EEEEESSTTS
T ss_pred             CCceEEEEEecCCEEEEEe-cCCEEEEECCCCccccccccCCCccceeeEEEEEecC-CceEEE-cCCc-eEEEecCCCC
Confidence            3578999998555555555 456553322222233332211111  12355677754 344444 4445 3344444455


Q ss_pred             eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                      ....+..-..-......+....+. ....++..+.  ||...+ .-.+|+.+..      .-...+..+..+++|.++++
T Consensus        92 tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~--iy~T~D-gG~tW~~~~~------~~~gs~~~~~r~~dG~~vav  161 (302)
T PF14870_consen   92 TWERVPLSSKLPGSPFGITALGDG-SAELAGDRGA--IYRTTD-GGKTWQAVVS------ETSGSINDITRSSDGRYVAV  161 (302)
T ss_dssp             S-EE----TT-SS-EEEEEEEETT-EEEEEETT----EEEESS-TTSSEEEEE-------S----EEEEEE-TTS-EEEE
T ss_pred             CcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCc--EEEeCC-CCCCeeEccc------CCcceeEeEEECCCCcEEEE
Confidence            544432111111122222222233 3333445554  343333 2335554321      12356888889999999988


Q ss_pred             EeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceee
Q 018675          232 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL  311 (352)
Q Consensus       232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~  311 (352)
                      +.....+.-|+-         +...|.+....   ....+.++.+.+++.+-.....+.+++-+...    +.....+.+
T Consensus       162 s~~G~~~~s~~~---------G~~~w~~~~r~---~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~----~~~~w~~~~  225 (302)
T PF14870_consen  162 SSRGNFYSSWDP---------GQTTWQPHNRN---SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD----DGETWSEPI  225 (302)
T ss_dssp             ETTSSEEEEE-T---------T-SS-EEEE-----SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT----EEEEE---B
T ss_pred             ECcccEEEEecC---------CCccceEEccC---ccceehhceecCCCCEEEEeCCcEEEEccCCC----Ccccccccc
Confidence            877666667753         12335444332   34668889999988766666778777654111    011111111


Q ss_pred             ecccccCcceeEEEecCCCcceEEEecCCCeE
Q 018675          312 KKEKAHDMDVNSVQWSPGERRLLASASDDGMI  343 (352)
Q Consensus       312 ~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i  343 (352)
                      .....-...+.+++|.|++. +.|.|+ .|.+
T Consensus       226 ~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l  255 (302)
T PF14870_consen  226 IPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL  255 (302)
T ss_dssp             -TTSS--S-EEEEEESSSS--EEEEES-TT-E
T ss_pred             CCcccCceeeEEEEecCCCC-EEEEeC-CccE
Confidence            11222345689999998765 566555 4544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.81  E-value=0.25  Score=28.52  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=26.1

Q ss_pred             cceeEEEecCCCc--ceEEEecCCCeEEEEeecc
Q 018675          319 MDVNSVQWSPGER--RLLASASDDGMIKIWELAN  350 (352)
Q Consensus       319 ~~i~~~~~sp~~~--~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +.|.++.|||.+.  .+|+-+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3588999998654  5888888889999999984

It contains a characteristic DLL sequence motif.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.78  E-value=4.9  Score=36.13  Aligned_cols=105  Identities=16%  Similarity=0.274  Sum_probs=55.7

Q ss_pred             ceEEEEECCCCCEEEEEe-----------CCC-cEEEEEccCC--ceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCc
Q 018675           76 TVRSCAWSPSGKLLATAS-----------FDA-TTCIWEDVGG--DYECVATLEGHENEVKSVSWNASGTLLATCGRDKS  141 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~-----------~d~-~i~i~~~~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~  141 (352)
                      ....++|.++|+++++-.           ..+ .|.++++.++  .......+...-...+.+++.+++ ++++ +...-
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCeE
Confidence            346788999999887653           123 6777765432  222222332223456788888888 5554 44432


Q ss_pred             EEEEecCCCC----eeEEE-EEeec----CccCeeEEEEcCCCCEEEEEe
Q 018675          142 VWIWEVMPGN----EFECV-SVLQG----HAQDVKMVQWHPTMDVLFSCS  182 (352)
Q Consensus       142 v~vwd~~~~~----~~~~~-~~~~~----h~~~v~~~~~~~~~~~l~s~~  182 (352)
                      .++.|.....    ..+.+ ..+..    +......+.|.|++.+.++-+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            2333432111    11222 22221    123466788999988766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.73  E-value=4.2  Score=35.25  Aligned_cols=284  Identities=10%  Similarity=0.132  Sum_probs=119.9

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecc-eecceEEEEECCCCCEEEEEeCCCcEE
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM-HTRTVRSCAWSPSGKLLATASFDATTC   99 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~~i~   99 (352)
                      ...+.+|.|...+      .-++. +..+++  +....+.+.|.....-... -.-..+++.|..+ ..+++ +..+.+.
T Consensus        16 ~~~l~dV~F~d~~------~G~~V-G~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~ll   84 (302)
T PF14870_consen   16 DKPLLDVAFVDPN------HGWAV-GAYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGLLL   84 (302)
T ss_dssp             SS-EEEEEESSSS-------EEEE-ETTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTEEE
T ss_pred             CCceEEEEEecCC------EEEEE-ecCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCceEE
Confidence            3478899997432      23444 455543  4444555556543211110 0124567777643 44444 4455443


Q ss_pred             EEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE
Q 018675          100 IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF  179 (352)
Q Consensus       100 i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  179 (352)
                      .-.+....+..+.....-.+....+....++...+ ++..+.|.. ....+...+.+  ...-...+..+..++++.+++
T Consensus        85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~~~--~~~~~gs~~~~~r~~dG~~va  160 (302)
T PF14870_consen   85 HTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQAV--VSETSGSINDITRSSDGRYVA  160 (302)
T ss_dssp             EESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEE-ESSTTSSEEEE--E-S----EEEEEE-TTS-EEE
T ss_pred             EecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCeeEc--ccCCcceeEeEEECCCCcEEE
Confidence            33333333333321111222333333333333333 344454322 22333343322  222335677778889999887


Q ss_pred             EEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCcccee
Q 018675          180 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRH  259 (352)
Q Consensus       180 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  259 (352)
                      +++.-....-|+...   ..|......      -...|.++.|.|++.+.+.+ ..|.|++=+....       ...|..
T Consensus       161 vs~~G~~~~s~~~G~---~~w~~~~r~------~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~-------~~~w~~  223 (302)
T PF14870_consen  161 VSSRGNFYSSWDPGQ---TTWQPHNRN------SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD-------GETWSE  223 (302)
T ss_dssp             EETTSSEEEEE-TT----SS-EEEE--------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE-------EEEE--
T ss_pred             EECcccEEEEecCCC---ccceEEccC------ccceehhceecCCCCEEEEe-CCcEEEEccCCCC-------cccccc
Confidence            776555556674322   223332221      24679999999998876644 7888887751100       111221


Q ss_pred             eEEeec-ccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEec
Q 018675          260 LCTISG-YHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS  338 (352)
Q Consensus       260 ~~~~~~-~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~  338 (352)
                      .. ... ...-.+..+++.+++.+-+++..|++.+=...      ++...+. .....-...++.+.|.++++ -++ .|
T Consensus       224 ~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~Dg------GktW~~~-~~~~~~~~n~~~i~f~~~~~-gf~-lG  293 (302)
T PF14870_consen  224 PI-IPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDG------GKTWQKD-RVGENVPSNLYRIVFVNPDK-GFV-LG  293 (302)
T ss_dssp             -B--TTSS--S-EEEEEESSSS-EEEEESTT-EEEESST------TSS-EE--GGGTTSSS---EEEEEETTE-EEE-E-
T ss_pred             cc-CCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCC------CccceEC-ccccCCCCceEEEEEcCCCc-eEE-EC
Confidence            00 000 11223677888887755555566655442111      1222211 11122345789999976554 454 67


Q ss_pred             CCCeEEEE
Q 018675          339 DDGMIKIW  346 (352)
Q Consensus       339 ~Dg~i~iw  346 (352)
                      .||.|.-|
T Consensus       294 ~~G~ll~~  301 (302)
T PF14870_consen  294 QDGVLLRY  301 (302)
T ss_dssp             STTEEEEE
T ss_pred             CCcEEEEe
Confidence            79988655

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.20  E-value=4.7  Score=34.19  Aligned_cols=103  Identities=17%  Similarity=0.260  Sum_probs=61.8

Q ss_pred             EEEEccCCCCCCCccEEEEeeCCCe-EEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC-----CcEE
Q 018675           26 SLAWKPTAGVDGVAPVFASCSGDKT-VRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD-----ATTC   99 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s~D~~-v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----~~i~   99 (352)
                      .|+++|..     +.-++-+-.=|+ ..++|.......-..... +..|  .--.-.|||||++|-..-+|     |.|-
T Consensus        72 gi~~~p~~-----~ravafARrPGtf~~vfD~~~~~~pv~~~s~-~~RH--fyGHGvfs~dG~~LYATEndfd~~rGViG  143 (366)
T COG3490          72 GIAFHPAL-----PRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-EGRH--FYGHGVFSPDGRLLYATENDFDPNRGVIG  143 (366)
T ss_pred             CeecCCCC-----cceEEEEecCCceEEEECCCCCcCcEEEecc-cCce--eecccccCCCCcEEEeecCCCCCCCceEE
Confidence            47788753     122333333343 445676655432221111 1111  22234699999988765444     5688


Q ss_pred             EEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEee
Q 018675          100 IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG  137 (352)
Q Consensus       100 i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~  137 (352)
                      +||.. .....+..+.+|.-....+.|.+||..++.+.
T Consensus       144 vYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         144 VYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             EEecc-cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            99865 34556677778877888999999999887664

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.71  E-value=7.2  Score=36.61  Aligned_cols=115  Identities=10%  Similarity=0.187  Sum_probs=65.2

Q ss_pred             ceEEEEECCC----CCEEEEEeCCCcEEEEEccCCce---eeeEeeccc-cC----CeeEEEECCCCcEEEEeeCCCcEE
Q 018675           76 TVRSCAWSPS----GKLLATASFDATTCIWEDVGGDY---ECVATLEGH-EN----EVKSVSWNASGTLLATCGRDKSVW  143 (352)
Q Consensus        76 ~v~~~~~s~~----~~~l~s~~~d~~i~i~~~~~~~~---~~~~~~~~h-~~----~v~~v~~~~~~~~l~s~~~d~~v~  143 (352)
                      .|..++|.|-    -..|+...-...+.+|.......   +....-.++ .+    --..+.|+|....|+.-.....-.
T Consensus        58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV  137 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV  137 (671)
T ss_pred             eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE
Confidence            5889999984    33555556667899997542111   111111111 11    123677999888766555444334


Q ss_pred             EEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCC-cEEEEec
Q 018675          144 IWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN-TIKVWWA  192 (352)
Q Consensus       144 vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i~iw~~  192 (352)
                      +++++.... .....++ ....|.|.+|.+||+.|+.+-... .-.|||-
T Consensus       138 ~~sV~~d~s-rVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  138 LPSVHCDSS-RVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             eeeeeeCCc-eEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            566543332 2223333 345789999999999877664432 3457754

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.55  E-value=0.14  Score=49.54  Aligned_cols=203  Identities=17%  Similarity=0.205  Sum_probs=104.7

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeee--eccee---cceEEEEECCCCCEEEE
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL--EEMHT---RTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~--~~~h~---~~v~~~~~s~~~~~l~s   91 (352)
                      ++|-.+.|-.+.|-..+     .+.++  -.-|.+.||+++--.....+...+  +.-..   ..|.-|-|-++.-++..
T Consensus       128 ~kgf~G~v~dl~fah~~-----~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~  200 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTK-----CPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICY  200 (1283)
T ss_pred             HhcCCCCcccccccccC-----ChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeee
Confidence            45667777777775433     12222  223778899865321111111111  11111   23333444446666777


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEE-----------ECCCCcEEEEeeCCCcEEEEecCCCC--eeEEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVS-----------WNASGTLLATCGRDKSVWIWEVMPGN--EFECVSV  158 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~-----------~~~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~  158 (352)
                      +-.++++++....+..   ...+.+|...+..++           .+|||..|+.+..||.+++|.+....  ...|++.
T Consensus       201 ~~~~~~i~lL~~~ra~---~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe  277 (1283)
T KOG1916|consen  201 GLKGGEIRLLNINRAL---RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE  277 (1283)
T ss_pred             ccCCCceeEeeechHH---HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence            7778888876544321   122344655544332           58999999999999999999864322  1223344


Q ss_pred             eecCcc--CeeEEEEcCC---------CCEEEEEeC-CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC
Q 018675          159 LQGHAQ--DVKMVQWHPT---------MDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG  226 (352)
Q Consensus       159 ~~~h~~--~v~~~~~~~~---------~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~  226 (352)
                      .+.|..  .++.+ ++.+         ..++++++. .+.+++|     ....|+|....  .    ...|..+. -+++
T Consensus       278 wkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w-----~~a~w~Cll~~--~----~d~v~iV~-p~~~  344 (1283)
T KOG1916|consen  278 WKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFW-----AEAPWQCLLDK--L----IDGVQIVG-PHDG  344 (1283)
T ss_pred             cCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEe-----eccchhhhhhh--c----ccceEeec-CCCc
Confidence            444441  22222 3221         123455544 5678888     34456665211  1    12344444 2333


Q ss_pred             C------------EEEEEeCCCcEEEEc
Q 018675          227 D------------KLVSCSDDLTIKIWG  242 (352)
Q Consensus       227 ~------------~l~s~~~dg~i~iwd  242 (352)
                      .            .+++-.-++.|++|.
T Consensus       345 ~v~~~~~~~~~~~~~v~r~v~~~i~~~q  372 (1283)
T KOG1916|consen  345 EVTDLSMCQWMTTRLVSRSVDGTIKIWQ  372 (1283)
T ss_pred             cccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence            2            134456678888885

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=91.99  E-value=9.6  Score=34.83  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=24.2

Q ss_pred             CcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          318 DMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       318 ~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      .+++..++.||+++ ++|--..+|.+.|.+..
T Consensus       216 ~~~i~~iavSpng~-~iAl~t~~g~l~v~ssD  246 (410)
T PF04841_consen  216 DGPIIKIAVSPNGK-FIALFTDSGNLWVVSSD  246 (410)
T ss_pred             CCCeEEEEECCCCC-EEEEEECCCCEEEEECc
Confidence            35799999999987 56777778888777643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.92  E-value=8.8  Score=34.24  Aligned_cols=139  Identities=18%  Similarity=0.276  Sum_probs=65.1

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeee-------------eecceecceEEEEECCCCC
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAV-------------LEEMHTRTVRSCAWSPSGK   87 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~-------------~~~~h~~~v~~~~~s~~~~   87 (352)
                      ...+....|+|+      +..+|-. .++.|.+++..++... .....             .++.--+.-.++.|||||+
T Consensus        42 ~~~~~~~~~sP~------g~~~~~v-~~~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~  113 (353)
T PF00930_consen   42 PPKLQDAKWSPD------GKYIAFV-RDNNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK  113 (353)
T ss_dssp             ETTBSEEEE-SS------STEEEEE-ETTEEEEESSTTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS
T ss_pred             ccccccceeecC------CCeeEEE-ecCceEEEECCCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCC
Confidence            456778899997      3455554 4678888876554211 11100             0000001225688999999


Q ss_pred             EEEEEeCC-CcEEEEEccCCceeeeEeeccccC---CeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEe---e
Q 018675           88 LLATASFD-ATTCIWEDVGGDYECVATLEGHEN---EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL---Q  160 (352)
Q Consensus        88 ~l~s~~~d-~~i~i~~~~~~~~~~~~~~~~h~~---~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~---~  160 (352)
                      .||....| ..+..+...        .......   .+..+.+-.-|.--..    -.+.++|+..++... +...   .
T Consensus       114 ~la~~~~d~~~v~~~~~~--------~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~-~~~~~~~~  180 (353)
T PF00930_consen  114 YLAFLRFDEREVPEYPLP--------DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTE-LDPPNSLN  180 (353)
T ss_dssp             EEEEEEEE-TTS-EEEEE--------EESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCE-E---HHHH
T ss_pred             EEEEEEECCcCCceEEee--------ccCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEE-eeeccccC
Confidence            99877654 333332211        1111111   2444444222222111    135667776554321 2211   2


Q ss_pred             cCccCeeEEEEcCCCCEEEE
Q 018675          161 GHAQDVKMVQWHPTMDVLFS  180 (352)
Q Consensus       161 ~h~~~v~~~~~~~~~~~l~s  180 (352)
                      .-..-+..+.|.+++..++.
T Consensus       181 ~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  181 PQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             TSSEEEEEEEEEETTEEEEE
T ss_pred             CCccCcccceecCCCcEEEE
Confidence            22345778899998874443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=91.81  E-value=8.2  Score=33.65  Aligned_cols=230  Identities=13%  Similarity=0.086  Sum_probs=101.7

Q ss_pred             ECCCCCE-EEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEe-
Q 018675           82 WSPSGKL-LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL-  159 (352)
Q Consensus        82 ~s~~~~~-l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-  159 (352)
                      |.++... +.+--..+.|.-|+..++...   .+. +.+.+.++..-..+..|+++.. + +.+++...+.....+... 
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~---~~~-~p~~~~~~~~~d~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKR---VFP-SPGGFSSGALIDAGGRLIACEH-G-VRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceE---EEE-CCCCcccceeecCCCeEEEEcc-c-cEEEeccCCceeEEecccc
Confidence            4555543 334444566666766544322   111 2233444443333445554443 2 445665433321222111 


Q ss_pred             ecCc-cCeeEEEEcCCCCEEEEEeCC---C------cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE
Q 018675          160 QGHA-QDVKMVQWHPTMDVLFSCSYD---N------TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL  229 (352)
Q Consensus       160 ~~h~-~~v~~~~~~~~~~~l~s~~~d---~------~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  229 (352)
                      .+.. ...+.+...|++.+.++....   +      .=.+|.+....    ...    .....+-..-+.|+||||++.|
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g----~~~----~l~~~~~~~~NGla~SpDg~tl  177 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG----GVV----RLLDDDLTIPNGLAFSPDGKTL  177 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC----CEE----EeecCcEEecCceEECCCCCEE
Confidence            1111 234566777888765543330   0      11233322100    001    1111233455689999999766


Q ss_pred             EEEe-CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEE-ecCCCC-eEEEEEccCCccccCcc
Q 018675          230 VSCS-DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA-SGAADD-SVQFFVESKDDLIDGPS  306 (352)
Q Consensus       230 ~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-s~~~d~-~v~~~~~~~~~~~~~~~  306 (352)
                      .... ..+.|.-|+++.....     ..-+.............-.++.+.++.+- ++..+| .+..|....        
T Consensus       178 y~aDT~~~~i~r~~~d~~~g~-----~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG--------  244 (307)
T COG3386         178 YVADTPANRIHRYDLDPATGP-----IGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDG--------  244 (307)
T ss_pred             EEEeCCCCeEEEEecCcccCc-----cCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCC--------
Confidence            6554 4577877776521100     00001111111112223334445555333 444443 677775432        


Q ss_pred             cceeeecccccCcceeEEEe-cCCCcceEEEecCC
Q 018675          307 YKMLLKKEKAHDMDVNSVQW-SPGERRLLASASDD  340 (352)
Q Consensus       307 ~~~~~~~~~~h~~~i~~~~~-sp~~~~~l~s~~~D  340 (352)
                        .++.+..-....+++++| .|+.+.|++|+...
T Consensus       245 --~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         245 --KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             --cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence              111111112246788888 45556677776655

>PRK13684 Ycf48-like protein; Provisional

Probab=91.41  E-value=9.7  Score=33.71  Aligned_cols=284  Identities=11%  Similarity=0.138  Sum_probs=129.1

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEE
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCI  100 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i  100 (352)
                      ...+++|.|....      .-++.+ .++.  ||...++.+.|+....-......+++++.|.++ ...++ +..+.+..
T Consensus        45 ~~~l~~v~F~d~~------~g~avG-~~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~  113 (334)
T PRK13684         45 EANLLDIAFTDPN------HGWLVG-SNRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH  113 (334)
T ss_pred             CCceEEEEEeCCC------cEEEEE-CCCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE
Confidence            4578889887432      335554 4443  454444444454321100011234778888754 33443 45555543


Q ss_pred             EEccCCceeeeEeeccccCCeeEE-EECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE
Q 018675          101 WEDVGGDYECVATLEGHENEVKSV-SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF  179 (352)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~v~~v-~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  179 (352)
                      -.+....+..+.......+....+ ...+ +..++ ++..+.|.. ....++....+..  .-...+..+.+.|++.++ 
T Consensus       114 S~DgG~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~-~g~~G~i~~-S~DgG~tW~~~~~--~~~g~~~~i~~~~~g~~v-  187 (334)
T PRK13684        114 TTDGGKNWTRIPLSEKLPGSPYLITALGP-GTAEM-ATNVGAIYR-TTDGGKNWEALVE--DAAGVVRNLRRSPDGKYV-  187 (334)
T ss_pred             ECCCCCCCeEccCCcCCCCCceEEEEECC-Cccee-eeccceEEE-ECCCCCCceeCcC--CCcceEEEEEECCCCeEE-
Confidence            333222333221110111111122 2222 22233 344444322 1223333332221  113456778888887655 


Q ss_pred             EEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCcccee
Q 018675          180 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRH  259 (352)
Q Consensus       180 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  259 (352)
                      ..+..|.+..-  .+....+|.....      .-...++++.+.+++..++.+ ..|.+++=+.        ++-..|..
T Consensus       188 ~~g~~G~i~~s--~~~gg~tW~~~~~------~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~--------d~G~sW~~  250 (334)
T PRK13684        188 AVSSRGNFYST--WEPGQTAWTPHQR------NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDP--------DDLESWSK  250 (334)
T ss_pred             EEeCCceEEEE--cCCCCCeEEEeeC------CCcccceeeeEcCCCCEEEEe-cCCEEEEccC--------CCCCcccc
Confidence            44455544321  1111223433211      234578899999998876665 4576643211        11223432


Q ss_pred             eEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecC
Q 018675          260 LCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD  339 (352)
Q Consensus       260 ~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~  339 (352)
                      ...-.......++.+.+.+++.+.+++.+|.+..-...      +..+..+. ....-....+.+.|..+++ .++ .|.
T Consensus       251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~------G~tW~~~~-~~~~~~~~~~~~~~~~~~~-~~~-~G~  321 (334)
T PRK13684        251 PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDG------GKTWEKDP-VGEEVPSNFYKIVFLDPEK-GFV-LGQ  321 (334)
T ss_pred             ccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCC------CCCCeECC-cCCCCCcceEEEEEeCCCc-eEE-ECC
Confidence            11100001234566777777666666677766542111      11111110 0011224678888876554 454 677


Q ss_pred             CCeEEEEe
Q 018675          340 DGMIKIWE  347 (352)
Q Consensus       340 Dg~i~iw~  347 (352)
                      .|.|.-|+
T Consensus       322 ~G~il~~~  329 (334)
T PRK13684        322 RGVLLRYV  329 (334)
T ss_pred             CceEEEec
Confidence            88887765

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.30  E-value=8.1  Score=32.61  Aligned_cols=198  Identities=14%  Similarity=0.175  Sum_probs=89.8

Q ss_pred             eeEEEECCCCcEEEEeeCCC--cEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 018675          121 VKSVSWNASGTLLATCGRDK--SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD  198 (352)
Q Consensus       121 v~~v~~~~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~  198 (352)
                      ...+.|..++.++-+.+.-|  .|+.+|+..++..... .+.. ...--.++.. .+....-...++...+||..     
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-~l~~-~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~-----  118 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-PLPP-RYFGEGITIL-GDKLYQLTWKEGTGFVYDPN-----  118 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE-E-TT-T--EEEEEEE-TTEEEEEESSSSEEEEEETT-----
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE-ECCc-cccceeEEEE-CCEEEEEEecCCeEEEEccc-----
Confidence            34666767778888887766  6777887766533221 1211 1111223332 22334445567888888643     


Q ss_pred             CceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCC----ccceeeEEeecccCcceEEE
Q 018675          199 NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY----ASWRHLCTISGYHDRTIFSV  274 (352)
Q Consensus       199 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~  274 (352)
                      +++.+.++.-     ...=|.|+  .+++.|+.+....++.++|.+..+.......    .....+..+. +..+.|++-
T Consensus       119 tl~~~~~~~y-----~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE-~i~G~IyAN  190 (264)
T PF05096_consen  119 TLKKIGTFPY-----PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE-YINGKIYAN  190 (264)
T ss_dssp             TTEEEEEEE------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE-EETTEEEEE
T ss_pred             cceEEEEEec-----CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE-EEcCEEEEE
Confidence            3444444432     12345666  4566677666677888888542211100000    0000111111 123445555


Q ss_pred             EecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEec
Q 018675          275 HWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS  338 (352)
Q Consensus       275 ~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~  338 (352)
                      .|..+.++..-...|.|.-|..-. .+...   .........-..=.+.||+.|....+++||-
T Consensus       191 VW~td~I~~Idp~tG~V~~~iDls-~L~~~---~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  191 VWQTDRIVRIDPETGKVVGWIDLS-GLRPE---VGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             ETTSSEEEEEETTT-BEEEEEE-H-HHHHH---HTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             eCCCCeEEEEeCCCCeEEEEEEhh-Hhhhc---ccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            555444444444455444331100 00000   0000000111345899999998888998884

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.85  E-value=5.2  Score=35.37  Aligned_cols=112  Identities=19%  Similarity=0.294  Sum_probs=55.6

Q ss_pred             CeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEe----ecCccCeeEEEEcCC---CCEEEEEeC-C------C
Q 018675          120 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL----QGHAQDVKMVQWHPT---MDVLFSCSY-D------N  185 (352)
Q Consensus       120 ~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~----~~h~~~v~~~~~~~~---~~~l~s~~~-d------~  185 (352)
                      ..++++|.|++.+|++ -..|.|++.+ ..+.....+...    .........++++|+   ...|..... .      .
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4578999999988775 5589999988 333321222222    223346788999995   233333222 1      1


Q ss_pred             --cEEEEecCCCCCCCceeEeee---ecc--CCCCcccEEEEEEcCCCCEEEEEeCCC
Q 018675          186 --TIKVWWAEDTDSDNWHCVQTI---SES--NNGHSSTIWALSFNAKGDKLVSCSDDL  236 (352)
Q Consensus       186 --~i~iw~~~~~~~~~~~~~~~~---~~~--~~~h~~~i~~l~~~~~~~~l~s~~~dg  236 (352)
                        .|.-|..... .........+   ...  ...|  .-..|.|.|+|.++++.+..+
T Consensus        81 ~~~v~r~~~~~~-~~~~~~~~~l~~~~p~~~~~~H--~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   81 DNRVVRFTLSDG-DGDLSSEEVLVTGLPDTSSGNH--NGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEEETT-SCEEEEEEEEEEEEES-CSSSS---EEEEEE-TTSEEEEEEB-TT
T ss_pred             ceeeEEEeccCC-ccccccceEEEEEeCCCCCCCC--CCccccCCCCCcEEEEeCCCC
Confidence              2322322221 0111111111   111  1234  345699999998888776544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=90.76  E-value=13  Score=33.83  Aligned_cols=184  Identities=7%  Similarity=0.033  Sum_probs=92.7

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC--CCCEEEEEeCCCcEEEEEccCCceeeeEeeccc
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP--SGKLLATASFDATTCIWEDVGGDYECVATLEGH  117 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h  117 (352)
                      ..++.+..++.+.-+|..+++..|+............    .-+|  .+..++.++.++.+..+|..+++..=...+...
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~----~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~  236 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG----ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQP  236 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC----CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccC
Confidence            3456667789999999999888887542110000000    0011  123455677788888777766542100111000


Q ss_pred             cC-----CeeEEEECC--CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          118 EN-----EVKSVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW  190 (352)
Q Consensus       118 ~~-----~v~~v~~~~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw  190 (352)
                      .+     ....+.-+|  .+..++.++.++.+...|...++..   ....  ......+.  ..+..++.++.++.+..+
T Consensus       237 ~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~---W~~~--~~~~~~~~--~~~~~vy~~~~~g~l~al  309 (394)
T PRK11138        237 TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV---WKRE--YGSVNDFA--VDGGRIYLVDQNDRVYAL  309 (394)
T ss_pred             CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE---Eeec--CCCccCcE--EECCEEEEEcCCCeEEEE
Confidence            00     000111122  2456667778899999998766431   1111  11111111  134567777888888888


Q ss_pred             ecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          191 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      +..... ..|... .+..  .....++    .  .+.++..++.||.+...|.+
T Consensus       310 d~~tG~-~~W~~~-~~~~--~~~~sp~----v--~~g~l~v~~~~G~l~~ld~~  353 (394)
T PRK11138        310 DTRGGV-ELWSQS-DLLH--RLLTAPV----L--YNGYLVVGDSEGYLHWINRE  353 (394)
T ss_pred             ECCCCc-EEEccc-ccCC--CcccCCE----E--ECCEEEEEeCCCEEEEEECC
Confidence            765431 112110 0000  0011111    1  25677888999999998864

>PHA02713 hypothetical protein; Provisional

Probab=90.70  E-value=5.3  Score=38.16  Aligned_cols=145  Identities=8%  Similarity=0.168  Sum_probs=68.9

Q ss_pred             ccEEEEeeCCC-----eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCC-----------------
Q 018675           39 APVFASCSGDK-----TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDA-----------------   96 (352)
Q Consensus        39 ~~~l~s~s~D~-----~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~-----------------   96 (352)
                      +.+.+.||.++     ++..||..+.  .|........ .......+  .-+|++.+.|+.++                 
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~mp~-~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDMPI-ALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCC--eEEECCCCCc-ccccccEE--EECCEEEEEeCCCcccccccccccccccccc
Confidence            35556666553     4677776654  2443221110 00011111  22678888887653                 


Q ss_pred             ------cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCC------cEEEEecCCCCeeEEEEEeecCcc
Q 018675           97 ------TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK------SVWIWEVMPGNEFECVSVLQGHAQ  164 (352)
Q Consensus        97 ------~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~------~v~vwd~~~~~~~~~~~~~~~h~~  164 (352)
                            ++..||..+..+..+..+.........+.  -++...+.||.++      .+-.||....+.+..+..+.....
T Consensus       427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~  504 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS  504 (557)
T ss_pred             cccccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence                  35667777666654443322111111222  2456666666542      355677654123333333322221


Q ss_pred             CeeEEEEcCCCCEEEEEeCCC--cEEEEec
Q 018675          165 DVKMVQWHPTMDVLFSCSYDN--TIKVWWA  192 (352)
Q Consensus       165 ~v~~~~~~~~~~~l~s~~~d~--~i~iw~~  192 (352)
                      ....+.+  ++...+.|+.++  .+..||.
T Consensus       505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~  532 (557)
T PHA02713        505 ALHTILH--DNTIMMLHCYESYMLQDTFNV  532 (557)
T ss_pred             cceeEEE--CCEEEEEeeecceeehhhcCc
Confidence            2222222  567778888887  5555643

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.59  E-value=5.8  Score=35.98  Aligned_cols=102  Identities=15%  Similarity=0.280  Sum_probs=66.6

Q ss_pred             eecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeee--EeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCC
Q 018675           73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECV--ATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG  150 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~--~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~  150 (352)
                      .+++|.++.||+|.+.||.--.|.++.+++....+....  .+.+..+..|..+.|..+.+ ++--...| +-+|...+.
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEecCC-eEEEEEchh
Confidence            457999999999999999999999999987643322211  12222344588889977644 34344334 667776443


Q ss_pred             CeeEEEEEeecCccCeeEEEEcCCCCEE
Q 018675          151 NEFECVSVLQGHAQDVKMVQWHPTMDVL  178 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l  178 (352)
                      .  ..++..+.|.-+|+...|.++-..+
T Consensus       143 k--rslRlVks~~~nvnWy~yc~et~v~  168 (657)
T KOG2377|consen  143 K--RSLRLVKSHNLNVNWYMYCPETAVI  168 (657)
T ss_pred             h--hhhhhhhhcccCccEEEEccccceE
Confidence            2  2234445677788888888876543

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.16  E-value=1  Score=25.28  Aligned_cols=28  Identities=25%  Similarity=0.522  Sum_probs=21.4

Q ss_pred             cceeEEEecCCCcceEEEecCC--CeEEEE
Q 018675          319 MDVNSVQWSPGERRLLASASDD--GMIKIW  346 (352)
Q Consensus       319 ~~i~~~~~sp~~~~~l~s~~~D--g~i~iw  346 (352)
                      ..-...+|||||++++.+...+  |.-.||
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            4566788999999888788887  777776

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.61  E-value=1.4  Score=25.48  Aligned_cols=31  Identities=19%  Similarity=0.242  Sum_probs=24.1

Q ss_pred             CCeeEEEECCCC---cEEEEeeCCCcEEEEecCC
Q 018675          119 NEVKSVSWNASG---TLLATCGRDKSVWIWEVMP  149 (352)
Q Consensus       119 ~~v~~v~~~~~~---~~l~s~~~d~~v~vwd~~~  149 (352)
                      ++|+++.|+|.+   ++|+-+-.-+.|.++|++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            478999999744   4777776678899999873

It contains a characteristic DLL sequence motif.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=89.05  E-value=13  Score=31.58  Aligned_cols=146  Identities=11%  Similarity=0.123  Sum_probs=77.1

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEE-------
Q 018675           85 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS-------  157 (352)
Q Consensus        85 ~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-------  157 (352)
                      .++.|+.|..+| +.+++.... .......  +...|..+...+.-+.|+.-+ |+.+.++++..-.......       
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDP-SKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCC-ccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            567889998888 777776221 1112222  223488888888777666554 4999999974322111000       


Q ss_pred             ----EeecCccCeeEEE--EcCCCCEEEEEeCCCcEEEEecCCCCCCCc-eeEeeeeccCCCCcccEEEEEEcCCCCEEE
Q 018675          158 ----VLQGHAQDVKMVQ--WHPTMDVLFSCSYDNTIKVWWAEDTDSDNW-HCVQTISESNNGHSSTIWALSFNAKGDKLV  230 (352)
Q Consensus       158 ----~~~~h~~~v~~~~--~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  230 (352)
                          ........+...+  -.+.+...+.....+.|.+|...... ..+ ...+++.     ....+.+++|.  ++.++
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~-~~f~~~~ke~~-----lp~~~~~i~~~--~~~i~  152 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPR-NSFSKLLKEIS-----LPDPPSSIAFL--GNKIC  152 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCc-ccccceeEEEE-----cCCCcEEEEEe--CCEEE
Confidence                0011122333333  11233333344445588888665421 122 2233332     23567888888  45566


Q ss_pred             EEeCCCcEEEEcCC
Q 018675          231 SCSDDLTIKIWGAD  244 (352)
Q Consensus       231 s~~~dg~i~iwd~~  244 (352)
                      .|..++ ..+.|++
T Consensus       153 v~~~~~-f~~idl~  165 (275)
T PF00780_consen  153 VGTSKG-FYLIDLN  165 (275)
T ss_pred             EEeCCc-eEEEecC
Confidence            666444 6667665

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=87.46  E-value=8.1  Score=37.57  Aligned_cols=109  Identities=14%  Similarity=0.186  Sum_probs=68.3

Q ss_pred             ccEEEEeeCCCeEEEEecCCC----------cee----eeeeeeeecceecceEEEEEC--CCCCEEEEEeCCCcEEEEE
Q 018675           39 APVFASCSGDKTVRIWEQSAS----------SRF----WNCKAVLEEMHTRTVRSCAWS--PSGKLLATASFDATTCIWE  102 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~----------~~~----~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~~~d~~i~i~~  102 (352)
                      ...|+.|.+||.|.+|..++-          ...    ...+-.+......++..+++.  ...++||++++...|.||-
T Consensus       114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa  193 (717)
T PF08728_consen  114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA  193 (717)
T ss_pred             eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence            478999999999999964210          000    000011111234577888888  7788999998888888885


Q ss_pred             ccCCceeeeE-eeccccCCeeEEEECCC-----Cc-EEEEeeCCCcEEEEec
Q 018675          103 DVGGDYECVA-TLEGHENEVKSVSWNAS-----GT-LLATCGRDKSVWIWEV  147 (352)
Q Consensus       103 ~~~~~~~~~~-~~~~h~~~v~~v~~~~~-----~~-~l~s~~~d~~v~vwd~  147 (352)
                      ....+..... .-..|...|-+|+|-++     |. .+++++-.|.+.+|++
T Consensus       194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            4321111111 01135567889999653     22 7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=87.30  E-value=22  Score=32.13  Aligned_cols=187  Identities=13%  Similarity=0.150  Sum_probs=105.5

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC---CCcEEEEEccCCceeeeEeecc
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF---DATTCIWEDVGGDYECVATLEG  116 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~i~i~~~~~~~~~~~~~~~~  116 (352)
                      +.+++...++.+.+.+..+....    .....  ......++++|+++.+-.+..   ++++.+.|..+...  ......
T Consensus        87 ~vyv~~~~~~~v~vid~~~~~~~----~~~~v--G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~--~~~~~v  158 (381)
T COG3391          87 KVYVTTGDSNTVSVIDTATNTVL----GSIPV--GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV--TATIPV  158 (381)
T ss_pred             eEEEecCCCCeEEEEcCccccee----eEeee--ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE--EEEEec
Confidence            56777777889999885544321    11101  114567899999976655544   67787777665533  222221


Q ss_pred             ccCCeeEEEECCCCcEEEEe-eCCCcEEEEecCCCCeeEEEEE---eecCccCeeEEEEcCCCCEEEEEeCC---CcEEE
Q 018675          117 HENEVKSVSWNASGTLLATC-GRDKSVWIWEVMPGNEFECVSV---LQGHAQDVKMVQWHPTMDVLFSCSYD---NTIKV  189 (352)
Q Consensus       117 h~~~v~~v~~~~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~i  189 (352)
                      -..+ ..+++.|+|+.++.+ ..++.+.+.|........  ..   ...-...-..+.+.|++..+...-..   +.+..
T Consensus       159 G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~  235 (381)
T COG3391         159 GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK  235 (381)
T ss_pred             CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence            1223 789999999965555 478899999964332110  00   01111223467788998866554333   46666


Q ss_pred             EecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEcCCc
Q 018675          190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADI  245 (352)
Q Consensus       190 w~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~-~~dg~i~iwd~~~  245 (352)
                      .+.....     ......  ..+-. ....+.++|+|.++... +..+.+.+.|...
T Consensus       236 id~~~~~-----v~~~~~--~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         236 IDTATGN-----VTATDL--PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             EeCCCce-----EEEecc--ccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence            6543321     111100  01111 33457889999887766 3447788887543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=87.18  E-value=35  Score=34.32  Aligned_cols=80  Identities=13%  Similarity=0.016  Sum_probs=51.6

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeee-eeecceecceEEEEECCCCCEEEEEeCCCcEEE
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA-VLEEMHTRTVRSCAWSPSGKLLATASFDATTCI  100 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i  100 (352)
                      ..|.|++++|....+...++++.|.++..+++-......... +.. .-...-.++|.-..|-.|..+|.++..||.+..
T Consensus       531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~-~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILI-THEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCccee-eeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            589999999964333345689999998887776443332111 111 101112356666677777889999999998876


Q ss_pred             EE
Q 018675          101 WE  102 (352)
Q Consensus       101 ~~  102 (352)
                      |.
T Consensus       610 fv  611 (1096)
T KOG1897|consen  610 FV  611 (1096)
T ss_pred             EE
Confidence            64

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=86.55  E-value=25  Score=32.04  Aligned_cols=121  Identities=8%  Similarity=0.123  Sum_probs=59.1

Q ss_pred             ceEEEEECCCCCEEEEEeC--------------------CCcEEEEEccCCceeeeEeeccccCCeeEEEEC--CCCcE-
Q 018675           76 TVRSCAWSPSGKLLATASF--------------------DATTCIWEDVGGDYECVATLEGHENEVKSVSWN--ASGTL-  132 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~~--------------------d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~~~-  132 (352)
                      .-+...+.|..+.++|..+                    -.++.+||....+......+......+..|+|.  |+..+ 
T Consensus       182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g  261 (461)
T PF05694_consen  182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG  261 (461)
T ss_dssp             ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred             CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence            3466777887788887642                    257999998876544333343222346677774  54444 


Q ss_pred             EEEeeCCCcEEEEecCCCCeeEEEE--Eeec-----C------------ccCeeEEEEcCCCCEEEE-EeCCCcEEEEec
Q 018675          133 LATCGRDKSVWIWEVMPGNEFECVS--VLQG-----H------------AQDVKMVQWHPTMDVLFS-CSYDNTIKVWWA  192 (352)
Q Consensus       133 l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~-----h------------~~~v~~~~~~~~~~~l~s-~~~d~~i~iw~~  192 (352)
                      |+.+.-..+|..|--.....++...  .+..     -            ..-++.+..|.|+++|.. .-.+|.++.||+
T Consensus       262 Fvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI  341 (461)
T PF05694_consen  262 FVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI  341 (461)
T ss_dssp             EEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred             EEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence            5555555556655432233222111  1110     0            123678889999998764 556899999999


Q ss_pred             CCCC
Q 018675          193 EDTD  196 (352)
Q Consensus       193 ~~~~  196 (352)
                      .+..
T Consensus       342 SDP~  345 (461)
T PF05694_consen  342 SDPF  345 (461)
T ss_dssp             SSTT
T ss_pred             CCCC
Confidence            8754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.37  E-value=24  Score=34.85  Aligned_cols=79  Identities=16%  Similarity=0.260  Sum_probs=50.8

Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEecCCC--CC-------CCceeEeeee--c--cCCCCcccEEEEEEcCC---CC
Q 018675          164 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT--DS-------DNWHCVQTIS--E--SNNGHSSTIWALSFNAK---GD  227 (352)
Q Consensus       164 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~-------~~~~~~~~~~--~--~~~~h~~~i~~l~~~~~---~~  227 (352)
                      ..|..+..+|++..++..|..+...+ .+...  ..       ....| .+..  .  ........|..+.|+|.   +.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~C-rt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINC-RTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeE-EEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            35778889999999988887664443 33211  00       01111 1111  0  11234568889999996   57


Q ss_pred             EEEEEeCCCcEEEEcCC
Q 018675          228 KLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       228 ~l~s~~~dg~i~iwd~~  244 (352)
                      .|+.=..|+++|+||+.
T Consensus       163 ~l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDIS  179 (717)
T ss_pred             eEEEEecCCEEEEEecC
Confidence            88888999999999985

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.13  E-value=19  Score=30.24  Aligned_cols=119  Identities=15%  Similarity=0.118  Sum_probs=69.2

Q ss_pred             cCCccceEEEEEccCC-------C--CCC----CccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceE-EEEEC
Q 018675           18 EGHTDRVWSLAWKPTA-------G--VDG----VAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR-SCAWS   83 (352)
Q Consensus        18 ~gH~~~V~~i~~~p~~-------~--~~~----~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s   83 (352)
                      -.|+..+.++.+..-.       +  .+.    .+++++-|-..|-+.+-+..++.+.|+....      +.|. .....
T Consensus        29 gSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~------~~vk~~a~~d  102 (354)
T KOG4649|consen   29 GSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL------ETVKVRAQCD  102 (354)
T ss_pred             ecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh------hhhccceEEc
Confidence            3588887777553310       0  000    2467777788888888888888777664321      1121 23457


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEE
Q 018675           84 PSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWI  144 (352)
Q Consensus        84 ~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~v  144 (352)
                      +++..+-.|+.|++....|..+.  .++...+.-.+..-+-+..|-...|..+...|.+.-
T Consensus       103 ~~~glIycgshd~~~yalD~~~~--~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vla  161 (354)
T KOG4649|consen  103 FDGGLIYCGSHDGNFYALDPKTY--GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLA  161 (354)
T ss_pred             CCCceEEEecCCCcEEEeccccc--ceEEecccCCceeccceecCCCceEEEEeccceEEE
Confidence            88999999999999998887654  445554432222223344553333444444454443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.14  E-value=11  Score=38.22  Aligned_cols=148  Identities=12%  Similarity=-0.014  Sum_probs=84.2

Q ss_pred             ceEEEEECCCCCEEEEE--eCCCcEEEEEccCCc------eeeeE---eeccccCCeeEEEECCCCc-EEEEeeCCCcEE
Q 018675           76 TVRSCAWSPSGKLLATA--SFDATTCIWEDVGGD------YECVA---TLEGHENEVKSVSWNASGT-LLATCGRDKSVW  143 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~--~~d~~i~i~~~~~~~------~~~~~---~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~  143 (352)
                      ++......+|+...++.  +.+-.|..||...-.      ..+++   +......-+.++.|+|.-. ..+.+..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45556667777655443  333356677754211      01111   1111112345778888543 366778899999


Q ss_pred             EEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc
Q 018675          144 IWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN  223 (352)
Q Consensus       144 vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~  223 (352)
                      +..+.....  .+..+ .-....+++.|+|.+..++.|-..|++.-|.....-      ...+.....-....|.+|+|-
T Consensus       182 V~~~~~~~~--~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei------k~~ip~Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  182 VKSTKQLAQ--NVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI------KSEIPEPPVEENYRVLSVTWL  252 (1405)
T ss_pred             hhhhhhhhh--hhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccce------eecccCCCcCCCcceeEEEEe
Confidence            877642211  11111 233467899999999999999999999888533211      011111111113678999998


Q ss_pred             CCCCEEEEE
Q 018675          224 AKGDKLVSC  232 (352)
Q Consensus       224 ~~~~~l~s~  232 (352)
                      ....+++.-
T Consensus       253 ~t~eflvvy  261 (1405)
T KOG3630|consen  253 STQEFLVVY  261 (1405)
T ss_pred             cceeEEEEe
Confidence            777777653

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=84.84  E-value=7.2  Score=37.21  Aligned_cols=33  Identities=24%  Similarity=0.383  Sum_probs=22.0

Q ss_pred             cceeEEEecC---CCcceEEEecCCCeEEEEeeccC
Q 018675          319 MDVNSVQWSP---GERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       319 ~~i~~~~~sp---~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      .....++.++   ++..++++.+.|+++|+|++.+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~  250 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETG  250 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTT
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCC
Confidence            3455566655   23457889999999999999764

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=84.22  E-value=29  Score=30.61  Aligned_cols=151  Identities=15%  Similarity=0.178  Sum_probs=77.3

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecce-EEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccc-
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTV-RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGH-  117 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h-  117 (352)
                      .-|.+-..||++.-..++...+.......+...-..++ ..-++...+..++--+.+|.+.--+...........+.-- 
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            35777789999999988755433221111111111222 2333444444555567888887776654432222222100 


Q ss_pred             ---------cCCeeEEEECCCCcEEEEe---eC-----C--CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC-E
Q 018675          118 ---------ENEVKSVSWNASGTLLATC---GR-----D--KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-V  177 (352)
Q Consensus       118 ---------~~~v~~v~~~~~~~~l~s~---~~-----d--~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~  177 (352)
                               .+.-.-+++++..++|+..   +.     |  ..|+++|+...+.   +..+.. ..++.+++.+.+.+ +
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr---v~Ri~l-~~~~~Si~Vsqd~~P~  303 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR---VARIPL-EHPIDSIAVSQDDKPL  303 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE---EEEEEE-EEEESEEEEESSSS-E
T ss_pred             ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE---EEEEeC-CCccceEEEccCCCcE
Confidence                     1222345666544443332   11     1  2567777765432   333321 13577888887755 6


Q ss_pred             EEEEe-CCCcEEEEecCC
Q 018675          178 LFSCS-YDNTIKVWWAED  194 (352)
Q Consensus       178 l~s~~-~d~~i~iw~~~~  194 (352)
                      |++.+ .++.+.+||...
T Consensus       304 L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  304 LYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             EEEEETTTTEEEEEETTT
T ss_pred             EEEEcCCCCeEEEEeCcC
Confidence            65554 578999998654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.70  E-value=2.4  Score=42.59  Aligned_cols=102  Identities=19%  Similarity=0.215  Sum_probs=64.6

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE  102 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  102 (352)
                      .+.++.|.|.-     ....|.+..|+.|++..+.-....  +..   ..-...+++++|+|-|+.++.|-..|++.-|.
T Consensus       157 f~~~~~wnP~v-----p~n~av~l~dlsl~V~~~~~~~~~--v~s---~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~  226 (1405)
T KOG3630|consen  157 FQLKNVWNPLV-----PLNSAVDLSDLSLRVKSTKQLAQN--VTS---FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYE  226 (1405)
T ss_pred             ccccccccCCc-----cchhhhhccccchhhhhhhhhhhh--hcc---cCcccceeeEEeccccceeeEecCCCeEEEee
Confidence            44577888853     346777889999998765422110  000   11345789999999999999999999999885


Q ss_pred             ccCCceeeeE-eec-cccCCeeEEEECCCCcEEEE
Q 018675          103 DVGGDYECVA-TLE-GHENEVKSVSWNASGTLLAT  135 (352)
Q Consensus       103 ~~~~~~~~~~-~~~-~h~~~v~~v~~~~~~~~l~s  135 (352)
                      ..- +..... ... .....|.+|+|-..-.+++.
T Consensus       227 P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  227 PSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             ccc-ceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            422 211111 110 11467899999766666554

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=83.69  E-value=48  Score=32.80  Aligned_cols=75  Identities=19%  Similarity=0.343  Sum_probs=51.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEccC---------C--ceeeeEe-------eccccCCeeEEEECCC---CcEEE
Q 018675           76 TVRSCAWSPSGKLLATASFDATTCIWEDVG---------G--DYECVAT-------LEGHENEVKSVSWNAS---GTLLA  134 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~---------~--~~~~~~~-------~~~h~~~v~~v~~~~~---~~~l~  134 (352)
                      .|..+.++|+|++++..|..+-..+.-...         +  +..|...       ...+...|..+.|+|.   +.+|+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            577889999999999888866554443221         1  1122211       0123457889999986   47888


Q ss_pred             EeeCCCcEEEEecCCC
Q 018675          135 TCGRDKSVWIWEVMPG  150 (352)
Q Consensus       135 s~~~d~~v~vwd~~~~  150 (352)
                      .-..|+++++||+...
T Consensus       166 vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEecCCEEEEEecCCC
Confidence            8999999999998643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=83.42  E-value=31  Score=30.45  Aligned_cols=107  Identities=20%  Similarity=0.259  Sum_probs=55.6

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEccCCce-eeeEee----ccccCCeeEEEECCC----CcEEEEeeCC--------
Q 018675           77 VRSCAWSPSGKLLATASFDATTCIWEDVGGDY-ECVATL----EGHENEVKSVSWNAS----GTLLATCGRD--------  139 (352)
Q Consensus        77 v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~-~~~~~~----~~h~~~v~~v~~~~~----~~~l~s~~~d--------  139 (352)
                      -++++|.|||+++++ ...|.|.+++ ..+.. ..+..+    .........++++|+    +.+.++-+..        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            467899999988775 5589999987 33332 222222    223456789999984    4443333321        


Q ss_pred             CcEEEEecCCC-Ce---eE-EEEEeec---CccCeeEEEEcCCCCEEEEEeCCC
Q 018675          140 KSVWIWEVMPG-NE---FE-CVSVLQG---HAQDVKMVQWHPTMDVLFSCSYDN  185 (352)
Q Consensus       140 ~~v~vwd~~~~-~~---~~-~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~d~  185 (352)
                      ..|.-|..... ..   .+ .+..+..   .......+.|.|++.+.++.+..+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence            23333443322 11   11 1122222   223456789999997766665444

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.35  E-value=12  Score=38.46  Aligned_cols=147  Identities=12%  Similarity=0.194  Sum_probs=78.0

Q ss_pred             eCCCcEEEEEccCCceeeeEeeccccCCeeEEEE-CCCC-------cEEEEeeCCCcEEEEecCCCCeeEEEEEee----
Q 018675           93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSW-NASG-------TLLATCGRDKSVWIWEVMPGNEFECVSVLQ----  160 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~-------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~----  160 (352)
                      +.|+.+.+|+..++..  ...+.+-...|..|.. .|..       ++++..+.--.|.++-+.-.........+.    
T Consensus        96 TiDn~L~lWny~~~~e--~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~  173 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNE--LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK  173 (1311)
T ss_pred             EeCCeEEEEEcCCCCc--cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence            4688999999876321  2233444445555543 2321       232222222335555432111101111111    


Q ss_pred             --cCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCcee----------------EeeeeccCCCCcccEEEEEE
Q 018675          161 --GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHC----------------VQTISESNNGHSSTIWALSF  222 (352)
Q Consensus       161 --~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----------------~~~~~~~~~~h~~~i~~l~~  222 (352)
                        .....|.++....+|+.+++|-.+   .+|.+.-...+.|..                +.++......+..+|..+..
T Consensus       174 i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I  250 (1311)
T KOG1900|consen  174 ISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI  250 (1311)
T ss_pred             eecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence              123457788877778776665544   345332222222210                01111122356789999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEcCC
Q 018675          223 NAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       223 ~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      ......+.+=+..|+|.+|++.
T Consensus       251 D~SR~IlY~lsek~~v~~Y~i~  272 (1311)
T KOG1900|consen  251 DNSRNILYVLSEKGTVSAYDIG  272 (1311)
T ss_pred             ccccceeeeeccCceEEEEEcc
Confidence            9998899999999999999975

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=83.04  E-value=2.5  Score=41.46  Aligned_cols=141  Identities=13%  Similarity=0.207  Sum_probs=76.9

Q ss_pred             CcEEEEEc--cCCceeeeEee---ccccCCeeEEEECC---CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCee
Q 018675           96 ATTCIWED--VGGDYECVATL---EGHENEVKSVSWNA---SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK  167 (352)
Q Consensus        96 ~~i~i~~~--~~~~~~~~~~~---~~h~~~v~~v~~~~---~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~  167 (352)
                      |.+.+|+.  ..|++.+...+   ......+.-|.|+|   +.-++..+-.++++++.......    ...+.+|...++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----~~l~rsHs~~~~  228 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL----RSLFRSHSQRVT  228 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH----HHHHHhcCCCcc
Confidence            56778875  34544433222   23334566777876   34455556667777775543221    122344665544


Q ss_pred             EE-----------EEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC---------C
Q 018675          168 MV-----------QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG---------D  227 (352)
Q Consensus       168 ~~-----------~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~---------~  227 (352)
                      .+           ..+|||..++.+..||.++.|-+.-.......|.+... ...+| ..|..+ |+...         .
T Consensus       229 d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk-phd~~-p~vC~l-c~~~~~~~v~i~~w~  305 (1283)
T KOG1916|consen  229 DMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK-PHDKH-PRVCWL-CHKQEILVVSIGKWV  305 (1283)
T ss_pred             cHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC-CCCCC-Cceeee-eccccccCCccceeE
Confidence            32           37899999999999999999965544444444443332 11222 233333 43321         2


Q ss_pred             EEEEEeC-CCcEEEEcC
Q 018675          228 KLVSCSD-DLTIKIWGA  243 (352)
Q Consensus       228 ~l~s~~~-dg~i~iwd~  243 (352)
                      +++++++ +..+++|..
T Consensus       306 ~~Itttd~nre~k~w~~  322 (1283)
T KOG1916|consen  306 LRITTTDVNREEKFWAE  322 (1283)
T ss_pred             EEEecccCCcceeEeec
Confidence            4555543 456888854

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=82.82  E-value=9.2  Score=30.14  Aligned_cols=29  Identities=28%  Similarity=0.454  Sum_probs=23.5

Q ss_pred             CeeEEEECCCC------cEEEEeeCCCcEEEEecC
Q 018675          120 EVKSVSWNASG------TLLATCGRDKSVWIWEVM  148 (352)
Q Consensus       120 ~v~~v~~~~~~------~~l~s~~~d~~v~vwd~~  148 (352)
                      .|..++|||.|      .+|+....++.|.+|.-.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            68899999854      378888899999999753

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PRK13684 Ycf48-like protein; Provisional

Probab=82.69  E-value=34  Score=30.30  Aligned_cols=234  Identities=13%  Similarity=0.183  Sum_probs=104.8

Q ss_pred             ecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEe-eccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe
Q 018675           74 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVAT-LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE  152 (352)
Q Consensus        74 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~  152 (352)
                      ...++++.|....+.+++| .++.|..=.+-...++.+.. +......+.++.|.++ ..++ ++..+.|.. .-..+..
T Consensus        45 ~~~l~~v~F~d~~~g~avG-~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~-~G~~g~i~~-S~DgG~t  120 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVG-SNRTLLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWI-VGQPSLLLH-TTDGGKN  120 (334)
T ss_pred             CCceEEEEEeCCCcEEEEE-CCCEEEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEE-eCCCceEEE-ECCCCCC
Confidence            3467888998555656655 45555432222223332211 1111234667777643 3344 344454322 1122333


Q ss_pred             eEEEEE---eecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE
Q 018675          153 FECVSV---LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL  229 (352)
Q Consensus       153 ~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  229 (352)
                      ...+..   +.++.  .......+ +. +..++..+.|  |...+ .-.+|..+..      .-...+.++.+.|++.++
T Consensus       121 W~~~~~~~~~~~~~--~~i~~~~~-~~-~~~~g~~G~i--~~S~D-gG~tW~~~~~------~~~g~~~~i~~~~~g~~v  187 (334)
T PRK13684        121 WTRIPLSEKLPGSP--YLITALGP-GT-AEMATNVGAI--YRTTD-GGKNWEALVE------DAAGVVRNLRRSPDGKYV  187 (334)
T ss_pred             CeEccCCcCCCCCc--eEEEEECC-Cc-ceeeeccceE--EEECC-CCCCceeCcC------CCcceEEEEEECCCCeEE
Confidence            332221   11111  11112222 22 2233444444  22221 2234543321      123468889999998776


Q ss_pred             EEEeCCCcEEE-EcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccc
Q 018675          230 VSCSDDLTIKI-WGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYK  308 (352)
Q Consensus       230 ~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~  308 (352)
                      +++. .|.+.. ++-         +-..|....   ......++.+.+.+++.++..+..|.+++-....     ...+.
T Consensus       188 ~~g~-~G~i~~s~~~---------gg~tW~~~~---~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~-----G~sW~  249 (334)
T PRK13684        188 AVSS-RGNFYSTWEP---------GQTAWTPHQ---RNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDD-----LESWS  249 (334)
T ss_pred             EEeC-CceEEEEcCC---------CCCeEEEee---CCCcccceeeeEcCCCCEEEEecCCEEEEccCCC-----CCccc
Confidence            6554 454432 211         112343322   1234567777777777555555667665321111     11111


Q ss_pred             eeeecccccCcceeEEEecCCCcceEEEecCCCeEE
Q 018675          309 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK  344 (352)
Q Consensus       309 ~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~  344 (352)
                      .+......-...+.++++.|+++ ++ .++.+|.+.
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~-~~-~~G~~G~v~  283 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGE-IW-AGGGNGTLL  283 (334)
T ss_pred             cccCCccccccceeeEEEcCCCC-EE-EEcCCCeEE
Confidence            11111011224578899998765 44 466677654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=81.89  E-value=44  Score=31.00  Aligned_cols=57  Identities=14%  Similarity=0.209  Sum_probs=36.6

Q ss_pred             cCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEE----Eee-cCccCeeEEEEcCCC
Q 018675          118 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS----VLQ-GHAQDVKMVQWHPTM  175 (352)
Q Consensus       118 ~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~----~~~-~h~~~v~~~~~~~~~  175 (352)
                      -...+.+.|.|++.+|++--..|.|++++...... ..+.    ... ........++++|+.
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~-~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEV-KVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCce-eeeecCCceeccCCCCceeeEEECCCc
Confidence            34578999999998887766568898887433221 1111    111 124567889999885

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=81.34  E-value=30  Score=33.88  Aligned_cols=107  Identities=9%  Similarity=0.054  Sum_probs=67.2

Q ss_pred             CCCEEEEEeCCCcEEEEEccC-------C----c-------eeeeEeeccccCCeeEEEEC--CCCcEEEEeeCCCcEEE
Q 018675           85 SGKLLATASFDATTCIWEDVG-------G----D-------YECVATLEGHENEVKSVSWN--ASGTLLATCGRDKSVWI  144 (352)
Q Consensus        85 ~~~~l~s~~~d~~i~i~~~~~-------~----~-------~~~~~~~~~h~~~v~~v~~~--~~~~~l~s~~~d~~v~v  144 (352)
                      +...|+.+..||.+.+|....       .    +       ..+-..+. -...++.++++  ....+||.++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            456888999999999996310       0    0       01112222 23468899998  77778888888888888


Q ss_pred             EecCCCCeeEEEEEeecCccCeeEEEEcCCC---C---EEEEEeCCCcEEEEec
Q 018675          145 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTM---D---VLFSCSYDNTIKVWWA  192 (352)
Q Consensus       145 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~---~l~s~~~d~~i~iw~~  192 (352)
                      |-............-..|..+|-+++|-++.   .   .+++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            7653321111111111255678888887643   2   6778899999888766

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.78  E-value=36  Score=29.27  Aligned_cols=166  Identities=10%  Similarity=0.108  Sum_probs=91.0

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCC
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDA   96 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~   96 (352)
                      +.|-+..|++++|+|++      ..|++..+...-.||=...+.-+-+.+..  ..|  -.-++.+..+|++.++--.++
T Consensus        81 i~g~~~nvS~LTynp~~------rtLFav~n~p~~iVElt~~GdlirtiPL~--g~~--DpE~Ieyig~n~fvi~dER~~  150 (316)
T COG3204          81 ILGETANVSSLTYNPDT------RTLFAVTNKPAAIVELTKEGDLIRTIPLT--GFS--DPETIEYIGGNQFVIVDERDR  150 (316)
T ss_pred             cccccccccceeeCCCc------ceEEEecCCCceEEEEecCCceEEEeccc--ccC--ChhHeEEecCCEEEEEehhcc
Confidence            45666669999999985      34555555556656633333222121111  112  123455666777777666667


Q ss_pred             cEEEEEccCCce--------eeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCc-----
Q 018675           97 TTCIWEDVGGDY--------ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA-----  163 (352)
Q Consensus        97 ~i~i~~~~~~~~--------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~-----  163 (352)
                      .+.++....+..        ..+....+.+.....++|.|....|..+-+-+-+.++........-.++....+.     
T Consensus       151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~  230 (316)
T COG3204         151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL  230 (316)
T ss_pred             eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence            666664432210        0111112225677899999998888888888888888765433111111111111     


Q ss_pred             --cCeeEEEEcCC-CCEEEEEeCCCcEEEEec
Q 018675          164 --QDVKMVQWHPT-MDVLFSCSYDNTIKVWWA  192 (352)
Q Consensus       164 --~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~  192 (352)
                        ..+..+.|.+. +.+++-+.+++.+.-.+.
T Consensus       231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~  262 (316)
T COG3204         231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDL  262 (316)
T ss_pred             EeeccccceecCCCCcEEEEecCCceEEEEec
Confidence              23556677754 445555556666655543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.43  E-value=47  Score=30.47  Aligned_cols=108  Identities=19%  Similarity=0.309  Sum_probs=64.8

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEE
Q 018675          214 SSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQF  293 (352)
Q Consensus       214 ~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~  293 (352)
                      .++|.++.|++|.+.+|.--.|..|.++........     ....+.|..   ....|..+.|+.+.-+|-....| +.+
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~-----l~~~~~ck~---k~~~IlGF~W~~s~e~A~i~~~G-~e~  136 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ-----LEYTQECKT---KNANILGFCWTSSTEIAFITDQG-IEF  136 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchh-----hHHHHHhcc---CcceeEEEEEecCeeEEEEecCC-eEE
Confidence            358999999999999999999999999965211110     001111221   12347788888876666555544 333


Q ss_pred             EEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEec
Q 018675          294 FVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS  338 (352)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~  338 (352)
                      |..-       +..+ .+.....|+..|+-..|.|+-.-+|.+.+
T Consensus       137 y~v~-------pekr-slRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  137 YQVL-------PEKR-SLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             EEEc-------hhhh-hhhhhhhcccCccEEEEccccceEeeecc
Confidence            3211       1111 12233567888999999987654444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	352
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-84
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		5e-49
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-34
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-21
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-21
2h9l_A	329	Wdr5delta23 Length = 329		1e-19
2h9l_A	329	Wdr5delta23 Length = 329		2e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-19
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-19
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-19
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-19
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-19
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-19
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-19
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-19
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-19
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-19
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-15
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-19
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-15
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-19
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-15
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-19
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-18
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-10
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-19
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		7e-15
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		7e-19
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		7e-15
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-18
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-18
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-10
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-15
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-14
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-14
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-14
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		5e-08
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		4e-14
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		5e-08
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		5e-14
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		5e-08
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-13
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-13
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-13
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-08
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-13
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		6e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-13
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-07
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		9e-13
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-12
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-12
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		6e-12
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		6e-12
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		6e-12
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-12
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-10
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-10
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		6e-10
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		7e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-10
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-10
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-10
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		7e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		2e-10
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		1e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		2e-10
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-10
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		5e-10
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-10
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		6e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-10
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		6e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		6e-10
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-09
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-09
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-09
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-09
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-09
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-09
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-09
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		4e-09
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-09
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		4e-09
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-09
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-09
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-09
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		8e-09
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		4e-08
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		1e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		8e-09
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		8e-09
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		9e-09
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-08
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-08
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		1e-07
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		5e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		1e-06
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		4e-06
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-06
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		2e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		6e-06
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		6e-06
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		6e-05
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		6e-06
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		7e-05
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		6e-06
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		6e-06
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		6e-06
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		6e-06
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		9e-06
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		1e-05
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		7e-05
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		2e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-05
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-04
1k8k_C	372	Crystal Structure Of Arp23 COMPLEX Length = 372		1e-04
3dxk_C	372	Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN		2e-04

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score =  308 bits (789), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 162/337 (48%), Positives = 214/337 (63%), Gaps = 21/337 (6%)
Query: 17  LEGHTD-RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
           +  H D R W LAW P AG      + ASC GD+ +RIW     S  W CK+VL E H R
Sbjct: 11  VPAHPDSRCWFLAWNP-AGT-----LLASCGGDRRIRIWGTEGDS--WICKSVLSEGHQR 62
Query: 76  TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
           TVR  AWSP G  LA+ASFDATTCIW+    D+ECV TLEGHENEVKSV+W  SG LLAT
Sbjct: 63  TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLAT 122
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 195
           C RDKSVW+WEV   +E+ECVSVL  H QDVK V WHP+ ++L S SYD+T+K++  E+ 
Sbjct: 123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE- 181
Query: 196 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA 255
             D+W C  T+     GH ST+W+L+F+  G +L SCSDD T++IW   +   + G   +
Sbjct: 182 --DDWVCCATL----EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235
Query: 256 ----SWRHLCTISGYHDRTIFSVHWSR-EGIIASGAADDSVQFFVESKDDLIDGPSYKML 310
               SW+ +CT+SG+H RTI+ + W +  G +A+   DD+++ F E  +     P++ + 
Sbjct: 236 GSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295
Query: 311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
               +AH  DVN V W+P E  LLAS SDDG +  W+
Sbjct: 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score =  191 bits (485), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 187/346 (54%), Gaps = 37/346 (10%)
Query: 14  IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM- 72
           I++L+ + +++WS         D    + A+ S D+ +++   S     +    VL+E  
Sbjct: 7   IKSLKLYKEKIWSF--------DFSQGILATGSTDRKIKL--VSVKYDDFTLIDVLDETA 56
Query: 73  HTRTVRSCAWSPSGKLLATASFDATTCIWE-----DVGGDYECVATLEGHENEVKSVSWN 127
           H + +RS AW P   LLA  SFD+T  IW      D   + + +A +EGHENEVK V+W+
Sbjct: 57  HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 128 ASGTLLATCGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 186
             G  LATC RDKSVWIWE    G E+EC+SVLQ H+QDVK V WHP+  +L S SYD+T
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT 176
Query: 187 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD--KLVSCSDDLTIKIWGAD 244
           +++W  +D D D+W CV  +    NGH  T+W+  F+      +L S SDD T+++W   
Sbjct: 177 VRIW--KDYD-DDWECVAVL----NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK-- 227
Query: 245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG 304
                  D    W     +   H R +++V W   G+IAS  AD  +  + E     +DG
Sbjct: 228 -YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEE-----VDG 281
Query: 305 PSYKMLLKKEKAHDM-DVNSVQW-SPGERRLLASASDDGMIKIWEL 348
             +K+  K+   H + ++N V+W     + +LA+  DDG++  W L
Sbjct: 282 E-WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 173/343 (50%), Gaps = 58/343 (16%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           N   + +QTL GH+  VW +A+ P    DG     AS S DKTV++W ++          
Sbjct: 126 NRNGQLLQTLTGHSSSVWGVAFSP----DG--QTIASASDDKTVKLWNRNGQ-------- 171
Query: 68  VLEEM--HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS 125
           +L+ +  H+ +V   A+SP G+ +A+AS D T  +W   G   + + TL GH + V+ V+
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVA 228
Query: 126 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 185
           ++  G  +A+   DK+V +W        + +  L GH+  V  V + P    + S S D 
Sbjct: 229 FSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDK 284
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
           T+K+W      + N   +QT++    GHSS++W ++F+  G  + S SDD T+K+W  + 
Sbjct: 285 TVKLW------NRNGQLLQTLT----GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 333
Query: 246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG 304
                       +HL T++G H  +++ V +S +G  IAS + D +V+ +  +       
Sbjct: 334 -----------GQHLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN------- 374
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
                LL+    H   V  V +SP + + +ASASDD  +K+W 
Sbjct: 375 ---GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN 413

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 153/346 (44%), Gaps = 48/346 (13%)
Query: 13  EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
           E   L GH   V  + + P      V  V  S S D T+++W+          K      
Sbjct: 100 EKYALSGHRSPVTRVIFHP------VFSVMVSASEDATIKVWDYETGDFERTLKG----- 148
Query: 73  HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 132
           HT +V+  ++  SGKLLA+ S D T  +W+  G  +EC+ T+ GH++ V SVS   +G  
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--FECIRTMHGHDHNVSSVSIMPNGDH 206
Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 192
           + +  RDK++ +WEV  G    CV    GH + V+MV+ +    ++ SCS D T++VW  
Sbjct: 207 IVSASRDKTIKMWEVQTGY---CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263
Query: 193 EDTD-----SDNWHCVQTIS-ESNNGHSSTIWALSFNAK-----GDKLVSCSDDLTIKIW 241
              +      ++ H V+ IS    + +SS   A     K     G  L+S S D TIK+W
Sbjct: 264 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323
Query: 242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDL 301
                        ++   L T+ G HD  +  V +   G      ADD      + K+  
Sbjct: 324 DV-----------STGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-- 369
Query: 302 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
                 K  +K   AH+  V S+ +       + + S D  +K+WE
Sbjct: 370 ------KRCMKTLNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWE 408

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 19/280 (6%)
Query: 73  HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 132
           H   V    + P   ++ +AS DAT  +W+   GD+E   TL+GH + V+ +S++ SG L
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKL 164
Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 192
           LA+C  D ++ +W+      FEC+  + GH  +V  V   P  D + S S D TIK+W  
Sbjct: 165 LASCSADMTIKLWDF---QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW-- 219
Query: 193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 252
              +    +CV+T +    GH   +  +  N  G  + SCS+D T+++W   +   +   
Sbjct: 220 ---EVQTGYCVKTFT----GHREWVRMVRPNQDGTLIASCSNDQTVRVWV--VATKECKA 270
Query: 253 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLID--GPSYKML 310
                RH+     +   + +S      G     +          S+D  I     S  M 
Sbjct: 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330
Query: 311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
           L     HD  V  V +  G + +L S +DD  +++W+  N
Sbjct: 331 LMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRVWDYKN 369

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 54/346 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 29  NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 79
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 80  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 133
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 134 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 191 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 236
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLID 303
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  + +++K+    
Sbjct: 237 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---- 287
Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
                 +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 288 ------IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 326

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
           L GH + V  V++ P  + L S S D  IK+W A D   +     +TIS    GH   I 
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 86
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS- 277
            +++++  + LVS SDD T+KIW             +S + L T+ G H   +F  +++ 
Sbjct: 87  DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 134
Query: 278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
           +  +I SG+ D+SV+ +     D+  G   K L     AH   V++V ++  +  L+ S+
Sbjct: 135 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 184
Query: 338 SDDGMIKIWELAN 350
           S DG+ +IW+ A+
Sbjct: 185 SYDGLCRIWDTAS 197

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 54/346 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 18  NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 68
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 69  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 122
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 180 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 225
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLID 303
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  + +++K+    
Sbjct: 226 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---- 276
Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
                 +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 277 ------IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 315

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
           L GH + V  V++ P  + L S S D  IK+W A D   +     +TIS    GH   I 
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 75
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS- 277
            +++++  + LVS SDD T+KIW             +S + L T+ G H   +F  +++ 
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 123
Query: 278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
           +  +I SG+ D+SV+ +     D+  G   K L     AH   V++V ++  +  L+ S+
Sbjct: 124 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 173
Query: 338 SDDGMIKIWELAN 350
           S DG+ +IW+ A+
Sbjct: 174 SYDGLCRIWDTAS 186

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 54/346 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 18  NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 68
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 69  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 122
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 180 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 225
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLID 303
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  + +++K+    
Sbjct: 226 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---- 276
Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
                 +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 277 ------IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 315

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
           L GH + V  V++ P  + L S S D  IK+W A D   +     +TIS    GH   I 
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 75
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
            +++++  + LVS SDD T+KIW             +S + L T+ G H   +F  +++ 
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 123
Query: 279 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
           +  +I SG+ D+SV+ +     D+  G   K L     AH   V++V ++  +  L+ S+
Sbjct: 124 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 173
Query: 338 SDDGMIKIWELAN 350
           S DG+ +IW+ A+
Sbjct: 174 SYDGLCRIWDTAS 186

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 11  NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 61
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 62  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 115
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 116 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 172
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 173 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 218
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  +          
Sbjct: 219 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 264
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
              K +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 265 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 308

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
           L GH + V  V++ P  + L S S D  IK+W A D   +     +TIS    GH   I 
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 68
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
            +++++  + LVS SDD T+KIW             +S + L T+ G H   +F  +++ 
Sbjct: 69  DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 116
Query: 279 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
           +  +I SG+ D+SV+ +     D+  G   K L     AH   V++V ++  +  L+ S+
Sbjct: 117 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFNR-DGSLIVSS 166
Query: 338 SDDGMIKIWELAN 350
           S DG+ +IW+ A+
Sbjct: 167 SYDGLCRIWDTAS 179

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 12  NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 62
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 63  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 116
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 174 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 219
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  +          
Sbjct: 220 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 265
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
              K +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 309

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
           L GH + V  V++ P  + L S S D  IK+W A D   +     +TIS    GH   I 
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 69
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS- 277
            +++++  + LVS SDD T+KIW             +S + L T+ G H   +F  +++ 
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 117
Query: 278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
           +  +I SG+ D+SV+ +     D+  G   K L     AH   V++V ++  +  L+ S+
Sbjct: 118 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 167
Query: 338 SDDGMIKIWELAN 350
           S DG+ +IW+ A+
Sbjct: 168 SYDGLCRIWDTAS 180

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 12  NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 62
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 63  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 116
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 174 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 219
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  +          
Sbjct: 220 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 265
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
              K +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 266 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 309

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
           L GH + V  V++ P  + L S S D  IK+W A D   +     +TIS    GH   I 
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 69
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS- 277
            +++++  + LVS SDD T+KIW             +S + L T+ G H   +F  +++ 
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 117
Query: 278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
           +  +I SG+ D+SV+ +     D+  G   K L     AH   V++V ++  +  L+ S+
Sbjct: 118 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 167
Query: 338 SDDGMIKIWELAN 350
           S DG+ +IW+ A+
Sbjct: 168 SYDGLCRIWDTAS 180

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 54/346 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 18  NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 68
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 69  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 122
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 180 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 225
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLID 303
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  + +++K+    
Sbjct: 226 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---- 276
Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
                 +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 277 ------IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 315

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
           L GH + V  V++ P  + L S S D  IK+W A D   +     +TIS    GH   I 
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 75
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
            +++++  + LVS SDD T+KIW             +S + L T+ G H   +F  +++ 
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 123
Query: 279 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
           +  +I SG+ D+SV+ +     D+  G   K L     AH   V++V ++  +  L+ S+
Sbjct: 124 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 173
Query: 338 SDDGMIKIWELAN 350
           S DG+ +IW+ A+
Sbjct: 174 SYDGLCRIWDTAS 186

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 17  NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 67
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 68  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 121
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 179 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 224
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  +          
Sbjct: 225 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 270
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
              K +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 271 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 314

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
           L GH + V  V++ P  + L S S D  IK+W A D   +     +TIS    GH   I 
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 74
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
            +++++  + LVS SDD T+KIW             +S + L T+ G H   +F  +++ 
Sbjct: 75  DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 122
Query: 279 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
           +  +I SG+ D+SV+ +     D+  G   K L     AH   V++V ++  +  L+ S+
Sbjct: 123 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 172
Query: 338 SDDGMIKIWELAN 350
           S DG+ +IW+ A+
Sbjct: 173 SYDGLCRIWDTAS 185

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 13  NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 63
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 64  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 117
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 118 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 174
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 175 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 220
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  +          
Sbjct: 221 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 266
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
              K +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 267 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 310

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
           L GH + V  V++ P  + L S S D  IK+W A D   +     +TIS    GH   I 
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 70
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS- 277
            +++++  + LVS SDD T+KIW             +S + L T+ G H   +F  +++ 
Sbjct: 71  DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 118
Query: 278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
           +  +I SG+ D+SV+ +     D+  G   K L     AH   V++V ++  +  L+ S+
Sbjct: 119 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 168
Query: 338 SDDGMIKIWELAN 350
           S DG+ +IW+ A+
Sbjct: 169 SYDGLCRIWDTAS 181

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 8   NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 58
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 59  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 112
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 113 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 169
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 170 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 215
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  +          
Sbjct: 216 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 261
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
              K +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 262 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 305

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
           L GH + V  V++ P  + L S S D  IK+W A D   +     +TIS    GH   I 
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 65
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
            +++++  + LVS SDD T+KIW             +S + L T+ G H   +F  +++ 
Sbjct: 66  DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 113
Query: 279 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
           +  +I SG+ D+SV+ +     D+  G   K L     AH   V++V ++  +  L+ S+
Sbjct: 114 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 163
Query: 338 SDDGMIKIWELAN 350
           S DG+ +IW+ A+
Sbjct: 164 SYDGLCRIWDTAS 176

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 54/346 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 36  NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 86
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 87  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 140
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 141 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 197
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 198 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 243
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLID 303
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  + +++K+    
Sbjct: 244 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---- 294
Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
                 +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 295 ------IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 333

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 128/260 (49%), Gaps = 34/260 (13%)
Query: 91  TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 150
           T S  AT      V  +Y    TL GH   V SV ++ +G  LA+   DK + IW    G
Sbjct: 20  TPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 79
Query: 151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN 210
            +FE    + GH   +  V W    ++L S S D T+K+W     D  +  C++T+    
Sbjct: 80  -KFE--KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL---- 127
Query: 211 NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 270
            GHS+ ++  +FN + + +VS S D +++IW      +++G      + L T+  + D  
Sbjct: 128 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-P 175
Query: 271 IFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG 329
           + +VH++R+G +I S + D   + +     D   G   K L+  +   +  V+ V++SP 
Sbjct: 176 VSAVHFNRDGSLIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPN 227
Query: 330 ERRLLASASDDGMIKIWELA 349
            + +LA A+ D  +K+W+ +
Sbjct: 228 GKYILA-ATLDNTLKLWDYS 246

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
           L GH + V  V++ P  + L S S D  IK+W A D   +     +TIS    GH   I 
Sbjct: 43  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 93
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
            +++++  + LVS SDD T+KIW             +S + L T+ G H   +F  +++ 
Sbjct: 94  DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 141
Query: 279 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
           +  +I SG+ D+SV+ +     D+  G   K L     AH   V++V ++  +  L+ S+
Sbjct: 142 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 191
Query: 338 SDDGMIKIWELAN 350
           S DG+ +IW+ A+
Sbjct: 192 SYDGLCRIWDTAS 204

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 54/346 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 34  NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 84
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 85  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 138
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 196 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 241
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLID 303
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  + +++K+    
Sbjct: 242 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---- 292
Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
                 +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 293 ------IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 331

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 128/260 (49%), Gaps = 34/260 (13%)
Query: 91  TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG 150
           T S  AT      V  +Y    TL GH   V SV ++ +G  LA+   DK + IW    G
Sbjct: 18  TPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 77
Query: 151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN 210
            +FE    + GH   +  V W    ++L S S D T+K+W     D  +  C++T+    
Sbjct: 78  -KFE--KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL---- 125
Query: 211 NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRT 270
            GHS+ ++  +FN + + +VS S D +++IW      +++G      + L T+  + D  
Sbjct: 126 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-P 173
Query: 271 IFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG 329
           + +VH++R+G +I S + D   + +     D   G   K L+  +   +  V+ V++SP 
Sbjct: 174 VSAVHFNRDGSLIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPN 225
Query: 330 ERRLLASASDDGMIKIWELA 349
            + +LA A+ D  +K+W+ +
Sbjct: 226 GKYILA-ATLDNTLKLWDYS 244

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 32/193 (16%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
           L GH + V  V++ P  + L S S D  IK+W A D   +     +TIS    GH   I 
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS----GHKLGIS 91
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
            +++++  + LVS SDD T+KIW             +S + L T+ G H   +F  +++ 
Sbjct: 92  DVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYVFCCNFNP 139
Query: 279 E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
           +  +I SG+ D+SV+ +     D+  G   K L     AH   V++V ++  +  L+ S+
Sbjct: 140 QSNLIVSGSFDESVRIW-----DVKTGKCLKTL----PAHSDPVSAVHFN-RDGSLIVSS 189
Query: 338 SDDGMIKIWELAN 350
           S DG+ +IW+ A+
Sbjct: 190 SYDGLCRIWDTAS 202

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           A+ S DK ++IW  +   +F    +
Sbjct: 15  NYALKF--TLAGHTKAVSSVKFSPNG------EWLAASSADKLIKIW-GAYDGKFEKTIS 65
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 66  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 119
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 177 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 222
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  +          
Sbjct: 223 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 268
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
              K +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 312

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 124/249 (49%), Gaps = 34/249 (13%)
Query: 102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG 161
           E V  +Y    TL GH   V SV ++ +G  LA    DK + IW    G +FE    + G
Sbjct: 10  EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG-KFE--KTISG 66
Query: 162 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 221
           H   +  V W    ++L S S D T+K+W     D  +  C++T+     GHS+ ++  +
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCN 117
Query: 222 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG- 280
           FN + + +VS S D +++IW      +++G      + L T+  + D  + +VH++R+G 
Sbjct: 118 FNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGS 165
Query: 281 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD 340
           +I S + D   + +     D   G   K L+  +   +  V+ V++SP  + +LA A+ D
Sbjct: 166 LIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLD 216
Query: 341 GMIKIWELA 349
             +K+W+ +
Sbjct: 217 NTLKLWDYS 225

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 163/346 (47%), Gaps = 54/346 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L  + TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 15  NYAL--MFTLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 65
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 66  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 119
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G    C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 177 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 222
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFF-VESKDDLID 303
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  + +++K+    
Sbjct: 223 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE---- 273
Query: 304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
                 +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 274 ------IVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 312

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 131/279 (46%), Gaps = 37/279 (13%)
Query: 73  HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 132
           HT+ V S  +SP+G+ LA++S D    IW    G +E   T+ GH+  +  V+W++   L
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 82
Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 192
           L +   DK++ IW+V  G   +C+  L+GH+  V    ++P  +++ S S+D ++++W  
Sbjct: 83  LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 137
Query: 193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 252
              D     C++T+      HS  + A+ FN  G  +VS S D   +IW           
Sbjct: 138 ---DVKTGMCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 181
Query: 253 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 311
             AS + L T+    +  +  V +S  G  I +   D++++ +  SK            L
Sbjct: 182 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC---------L 230
Query: 312 KKEKAHDMDVNSV--QWSPGERRLLASASDDGMIKIWEL 348
           K    H  +   +   +S    + + S S+D M+ IW L
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 32/200 (16%)
Query: 152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN 211
            +  +  L GH + V  V++ P  + L S S D  IK+W A D   +     +TIS    
Sbjct: 15  NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS---- 65
Query: 212 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 271
           GH   I  +++++  + LVS SDD T+KIW             +S + L T+ G H   +
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYV 113
Query: 272 FSVHWS-REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE 330
           F  +++ +  +I SG+ D+SV+ +     D+  G    M LK   AH   V++V ++  +
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIW-----DVKTG----MCLKTLPAHSDPVSAVHFN-RD 163
Query: 331 RRLLASASDDGMIKIWELAN 350
             L+ S+S DG+ +IW+ A+
Sbjct: 164 GSLIVSSSYDGLCRIWDTAS 183

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 15  NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 65
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 66  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 119
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 177 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 222
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  +          
Sbjct: 223 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 268
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
              K +++K + H   V S    P E  ++ASA+  +D  IK+++
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLYK 312

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 125/249 (50%), Gaps = 34/249 (13%)
Query: 102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG 161
           E V  +Y    TL GH   V SV ++ +G  LA+   DK + IW    G +FE    + G
Sbjct: 10  EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISG 66
Query: 162 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 221
           H   +  V W    ++L S S D T+K+W     D  +  C++T+     GHS+ ++  +
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCN 117
Query: 222 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG- 280
           FN + + +VS S D +++IW      +++G      + L T+  + D  + +VH++R+G 
Sbjct: 118 FNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGS 165
Query: 281 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD 340
           +I S + D   + +     D   G   K L+  +   +  V+ V++SP  + +LA A+ D
Sbjct: 166 LIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLD 216
Query: 341 GMIKIWELA 349
             +K+W+ +
Sbjct: 217 NTLKLWDYS 225

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 160/345 (46%), Gaps = 52/345 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L+   TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 15  NYALKF--TLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 65
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 66  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 119
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G   +C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D T+K+W      
Sbjct: 177 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNTLKLW------ 222
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  +          
Sbjct: 223 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------N 268
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
              K +++K + H   V S    P E  ++ASA+  +D  IK+++
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLFK 312

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 125/249 (50%), Gaps = 34/249 (13%)
Query: 102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG 161
           E V  +Y    TL GH   V SV ++ +G  LA+   DK + IW    G +FE    + G
Sbjct: 10  EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFE--KTISG 66
Query: 162 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 221
           H   +  V W    ++L S S D T+K+W     D  +  C++T+     GHS+ ++  +
Sbjct: 67  HKLGISDVAWSSDSNLLVSASDDKTLKIW-----DVSSGKCLKTL----KGHSNYVFCCN 117
Query: 222 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG- 280
           FN + + +VS S D +++IW      +++G      + L T+  + D  + +VH++R+G 
Sbjct: 118 FNPQSNLIVSGSFDESVRIW-----DVKTG------KCLKTLPAHSD-PVSAVHFNRDGS 165
Query: 281 IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD 340
           +I S + D   + +     D   G   K L+  +   +  V+ V++SP  + +LA A+ D
Sbjct: 166 LIVSSSYDGLCRIW-----DTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILA-ATLD 216
Query: 341 GMIKIWELA 349
             +K+W+ +
Sbjct: 217 NTLKLWDYS 225

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 158/345 (45%), Gaps = 52/345 (15%)
Query: 8   NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           NY L  + TL GHT  V S+ + P           AS S DK ++IW  +   +F    +
Sbjct: 15  NYAL--MFTLAGHTKAVSSVKFSPNG------EWLASSSADKLIKIW-GAYDGKFEKTIS 65
Query: 68  VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
                H   +   AWS    LL +AS D T  IW+   G  +C+ TL+GH N V   ++N
Sbjct: 66  ----GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFN 119
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               L+ +   D+SV IW+V  G    C+  L  H+  V  V ++    ++ S SYD   
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           ++W     D+ +  C++T+ + +N   S +    F+  G  +++ + D  +K+W      
Sbjct: 177 RIW-----DTASGQCLKTLIDDDNPPVSFV---KFSPNGKYILAATLDNDLKLW------ 222
Query: 248 MQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLIDG 304
                 Y+  + L T +G+ +++     ++S  G   I SG+ D+ V  +          
Sbjct: 223 -----DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW---------N 268
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS--DDGMIKIWE 347
              K +++K + H   V S    P E  ++ASA+  +D  IK+W+
Sbjct: 269 LQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWK 312

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 37/279 (13%)
Query: 73  HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 132
           HT+ V S  +SP+G+ LA++S D    IW    G +E   T+ GH+  +  V+W++   L
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNL 82
Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 192
           L +   DK++ IW+V  G   +C+  L+GH+  V    ++P  +++ S S+D ++++W  
Sbjct: 83  LVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-- 137
Query: 193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 252
              D     C++T+      HS  + A+ FN  G  +VS S D   +IW           
Sbjct: 138 ---DVKTGMCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--------- 181
Query: 253 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 311
             AS + L T+    +  +  V +S  G  I +   D+ ++ +  SK            L
Sbjct: 182 --ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKC---------L 230
Query: 312 KKEKAHDMDVNSV--QWSPGERRLLASASDDGMIKIWEL 348
           K    H  +   +   +S    + + S S+D M+ IW L
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 32/200 (16%)
Query: 152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN 211
            +  +  L GH + V  V++ P  + L S S D  IK+W A D   +     +TIS    
Sbjct: 15  NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTIS---- 65
Query: 212 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 271
           GH   I  +++++  + LVS SDD T+KIW             +S + L T+ G H   +
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-----------SSGKCLKTLKG-HSNYV 113
Query: 272 FSVHWSRE-GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE 330
           F  +++ +  +I SG+ D+SV+ +     D+  G    M LK   AH   V++V ++  +
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIW-----DVKTG----MCLKTLPAHSDPVSAVHFN-RD 163
Query: 331 RRLLASASDDGMIKIWELAN 350
             L+ S+S DG+ +IW+ A+
Sbjct: 164 GSLIVSSSYDGLCRIWDTAS 183

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 161/341 (47%), Gaps = 60/341 (17%)
Query: 10  ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL 69
           EL+  + L+GH D V +        +        S S D T+++W    S+    C   L
Sbjct: 107 ELKSPKVLKGHDDHVITC-------LQFCGNRIVSGSDDNTLKVW----SAVTGKCLRTL 155
Query: 70  EEMHTRTVRSCAWSPSGK--LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN 127
              HT  V    WS   +  ++ + S D T  +W    G  EC+ TL GH + V+ +  +
Sbjct: 156 VG-HTGGV----WSSQMRDNIIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLH 208
Query: 128 ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
               +  +  RD ++ +W++  G   +C+ VL GH   V+ VQ+     V  S +YD  +
Sbjct: 209 EKRVVSGS--RDATLRVWDIETG---QCLHVLMGHVAAVRCVQYDGRRVV--SGAYDFMV 261
Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR 247
           KVW     D +   C+ T+     GH++ +++L F+  G  +VS S D +I++W      
Sbjct: 262 KVW-----DPETETCLHTL----QGHTNRVYSLQFD--GIHVVSGSLDTSIRVWD----- 305
Query: 248 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSY 307
           +++G+       + T++G+   T  S    ++ I+ SG AD +V+ +     D+  G   
Sbjct: 306 VETGNC------IHTLTGHQSLT--SGMELKDNILVSGNADSTVKIW-----DIKTGQCL 352
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
           + L    K H   V  +Q++   +  + ++SDDG +K+W+L
Sbjct: 353 QTLQGPNK-HQSAVTCLQFN---KNFVITSSDDGTVKLWDL 389

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 132/288 (45%), Gaps = 41/288 (14%)
Query: 83  SPSGKLLATASFDATTCIWE-DVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRD 139
           +PS  +L    FD T    + D  G+      L GH+ E   +SWN+  SG LL +   D
Sbjct: 146 TPSSDVLV---FDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDD 201
Query: 140 KSVWIWEVMPGNE----FECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAED 194
            +V +W++  G +     +  ++  GH+  V+ V WH   + LF S + D  + +W   D
Sbjct: 202 HTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIW---D 258
Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDG 253
           T S+        S   + H++ +  LSFN   + +++  S D T+ +W     +++    
Sbjct: 259 TRSN---TTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---- 311
Query: 254 YASWRHLCTISGYHDRTIFSVHWS--REGIIASGAADDSVQFFVESK-------DDLIDG 304
                 L T   + D  IF VHWS   E I+AS   D  +  +  SK       +D  DG
Sbjct: 312 ------LHTFESHKDE-IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL 352
           P    LL     H   ++   W+P E  ++ S S+D +++IW++A  +
Sbjct: 365 PP--ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENI 410

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 144/341 (42%), Gaps = 45/341 (13%)
Query: 16  TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
           TLEGH   V SLA        G   +  S S DKT+  W+ +   + +       + H+ 
Sbjct: 12  TLEGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76  TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
            V+ C  +  G    +AS+D T  +W+   G  E      GH+++V SV  +   +++ +
Sbjct: 67  IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD------VLFSCSYDNTIKV 189
             RDK++ +W +    + +C++ L GH   V  V+  P          + S   D  +K 
Sbjct: 125 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
           W        N +  Q I     GH+S I  L+ +  G  + S   D  I +W        
Sbjct: 181 W--------NLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW-------- 223
Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG--PSY 307
                A+ + + T+S   +  +FS+ +S      + A    ++ F      L+D   P +
Sbjct: 224 ---NLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
               K  + H +   S+ WS   + L A  +D+ +I++W++
Sbjct: 279 AGYSKAAEPHAV---SLAWSADGQTLFAGYTDN-VIRVWQV 315

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 113 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 169
           TLEGH   V S++ +A    LL +  RDK++  W++   ++   V V   +GH+  V+  
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 229
                     S S+D T+++W     D       Q       GH S + ++  + K   +
Sbjct: 72  TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 122
Query: 230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 287
           +S S D TIK+W                + L T+ G++D       W  +  +     A 
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 345
           DDSV       D ++   +      +     H+ ++N++  SP +  L+ASA  DG I +
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 346 WELA 349
           W LA
Sbjct: 223 WNLA 226

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 144/341 (42%), Gaps = 45/341 (13%)
Query: 16  TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
           TLEGH   V SLA        G   +  S S DKT+  W+ +   + +       + H+ 
Sbjct: 12  TLEGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76  TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
            V+ C  +  G    +AS+D T  +W+   G  E      GH+++V SV  +   +++ +
Sbjct: 67  IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD------VLFSCSYDNTIKV 189
             RDK++ +W +    + +C++ L GH   V  V+  P          + S   D  +K 
Sbjct: 125 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
           W        N +  Q I     GH+S I  L+ +  G  + S   D  I +W        
Sbjct: 181 W--------NLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW-------- 223
Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG--PSY 307
                A+ + + T+S   +  +FS+ +S      + A    ++ F      L+D   P +
Sbjct: 224 ---NLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
               K  + H +   S+ WS   + L A  +D+ +I++W++
Sbjct: 279 AGYSKAAEPHAV---SLAWSADGQTLFAGYTDN-VIRVWQV 315

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 113 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 169
           TLEGH   V S++ +A    LL +  RDK++  W++   ++   V V   +GH+  V+  
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 229
                     S S+D T+++W     D       Q       GH S + ++  + K   +
Sbjct: 72  TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 122
Query: 230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 287
           +S S D TIK+W                + L T+ G++D       W  +  +     A 
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 345
           DDSV       D ++   +      +     H+ ++N++  SP +  L+ASA  DG I +
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 346 WELA 349
           W LA
Sbjct: 223 WNLA 226

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 144/341 (42%), Gaps = 45/341 (13%)
Query: 16  TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
           TLEGH   V SLA        G   +  S S DKT+  W+ +   + +       + H+ 
Sbjct: 6   TLEGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 76  TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
            V+ C  +  G    +AS+D T  +W+   G  E      GH+++V SV  +   +++ +
Sbjct: 61  IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIIS 118
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD------VLFSCSYDNTIKV 189
             RDK++ +W +    + +C++ L GH   V  V+  P          + S   D  +K 
Sbjct: 119 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
           W        N +  Q I     GH+S I  L+ +  G  + S   D  I +W        
Sbjct: 175 W--------NLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW-------- 217
Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG--PSY 307
                A+ + + T+S   +  +FS+ +S      + A    ++ F      L+D   P +
Sbjct: 218 ---NLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 272
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
               K  + H +   S+ WS   + L A  +D+ +I++W++
Sbjct: 273 AGYSKAAEPHAV---SLAWSADGQTLFAGYTDN-VIRVWQV 309

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 113 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 169
           TLEGH   V S++ +A    LL +  RDK++  W++   ++   V V   +GH+  V+  
Sbjct: 6   TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 229
                     S S+D T+++W     D       Q       GH S + ++  + K   +
Sbjct: 66  TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 116
Query: 230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 287
           +S S D TIK+W                + L T+ G++D       W  +  +     A 
Sbjct: 117 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 157
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 345
           DDSV       D ++   +      +     H+ ++N++  SP +  L+ASA  DG I +
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 216
Query: 346 WELA 349
           W LA
Sbjct: 217 WNLA 220

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 143/340 (42%), Gaps = 45/340 (13%)
Query: 16  TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
           TLEGH   V SLA        G   +  S S DKT+  W+ +   + +       + H+ 
Sbjct: 12  TLEGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76  TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
            V+ C  +  G    +AS+D T  +W+   G  E      GH+++V SV  +   +++ +
Sbjct: 67  IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD------VLFSCSYDNTIKV 189
             RDK++ +W +    + +C++ L GH   V  V+  P          + S   D  +K 
Sbjct: 125 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
           W        N +  Q I     GH+S I  L+ +  G  + S   D  I +W        
Sbjct: 181 W--------NLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW-------- 223
Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG--PSY 307
                A+ + + T+S   +  +FS+ +S      + A    ++ F      L+D   P +
Sbjct: 224 ---NLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
               K  + H +   S+ WS   + L A  +D+ +I++W+
Sbjct: 279 AGYSKAAEPHAV---SLAWSADGQTLFAGYTDN-VIRVWQ 314

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 113 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 169
           TLEGH   V S++ +A    LL +  RDK++  W++   ++   V V   +GH+  V+  
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 229
                     S S+D T+++W     D       Q       GH S + ++  + K   +
Sbjct: 72  TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 122
Query: 230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 287
           +S S D TIK+W                + L T+ G++D       W  +  +     A 
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 345
           DDSV       D ++   +      +     H+ ++N++  SP +  L+ASA  DG I +
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 346 WELA 349
           W LA
Sbjct: 223 WNLA 226

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 41/288 (14%)
Query: 83  SPSGKLLATASFDATTCIWE-DVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRD 139
           +PS  +L    FD T    + D  G+      L GH+ E   +SWN+  SG LL +   D
Sbjct: 146 TPSSDVLV---FDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDD 201
Query: 140 KSVWIWEVMPGNE----FECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAED 194
            +V +W++  G +     +  ++  GH+  V+ V WH   + LF S + D  + +W   D
Sbjct: 202 HTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIW---D 258
Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDG 253
           T S+        S   + H++ +  LSFN   + +++  S D T+ +W     +++    
Sbjct: 259 TRSN---TTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---- 311
Query: 254 YASWRHLCTISGYHDRTIFSVHWS--REGIIASGAADDSVQFFVESK-------DDLIDG 304
                 L T   + D  IF VHWS   E I+AS   D  +  +  SK       +D  DG
Sbjct: 312 ------LHTFESHKDE-IFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANTL 352
           P    LL     H   ++   W+P E  ++ S S+D + +IW+ A  +
Sbjct: 365 PP--ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAENI 410

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 123/267 (46%), Gaps = 37/267 (13%)
Query: 103 DVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEV--MP--GNEFECV 156
           D  G+      L GH+ E   +SWN   SG LL +   D ++ +W++  +P  G   +  
Sbjct: 162 DPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVDAK 220
Query: 157 SVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS 215
           ++  GH   V+ V WH   + LF S + D  + +W   DT S+N       S S + H++
Sbjct: 221 TIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIW---DTRSNN---TSKPSHSVDAHTA 274
Query: 216 TIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV 274
            +  LSFN   + +++  S D T+ +W     +++          L +   + D  IF V
Sbjct: 275 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK----------LHSFESHKDE-IFQV 323
Query: 275 HWS--REGIIASGAADDSVQFF-------VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ 325
            WS   E I+AS   D  +  +        +S +D  DGP    LL     H   ++   
Sbjct: 324 QWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGP--PELLFIHGGHTAKISDFS 381
Query: 326 WSPGERRLLASASDDGMIKIWELANTL 352
           W+P E  ++ S S+D ++++W++A  +
Sbjct: 382 WNPNEPWVICSVSEDNIMQVWQMAENI 408

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 143/341 (41%), Gaps = 45/341 (13%)
Query: 16  TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
           TLEGH   V SLA        G   +  S S DKT+  W+ +   + +       + H+ 
Sbjct: 12  TLEGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76  TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
            V+ C  +  G    +AS+D T  +W+   G  E      GH+++V SV  +   +++ +
Sbjct: 67  IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD------VLFSCSYDNTIKV 189
             RDK++ +W +    + +C++ L GH   V  V+  P          + S   D  +K 
Sbjct: 125 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
           W        N +  Q I     GH+S I  L+ +  G  + S   D  I +W        
Sbjct: 181 W--------NLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW-------- 223
Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG--PSY 307
                A+ + + T+S   +  +FS+ +S      + A    ++ F      L+D   P +
Sbjct: 224 ---NLAAKKAMYTLSAQDE--VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
                  + H +   S+ WS   + L A  +D+ +I++W++
Sbjct: 279 AGYSAAAEPHAV---SLAWSADGQTLFAGYTDN-VIRVWQV 315

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 113 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 169
           TLEGH   V S++ +A    LL +  RDK++  W++   ++   V V   +GH+  V+  
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 229
                     S S+D T+++W     D       Q       GH S + ++  + K   +
Sbjct: 72  TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVMSVDIDKKASMI 122
Query: 230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 287
           +S S D TIK+W                + L T+ G++D       W  +  +     A 
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 345
           DDSV       D ++   +      +     H+ ++N++  SP +  L+ASA  DG I +
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIML 222
Query: 346 WELA 349
           W LA
Sbjct: 223 WNLA 226

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 142/341 (41%), Gaps = 45/341 (13%)
Query: 16  TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
           TLEGH   V SLA        G   +  S S DKT+  W+ +   + +       + H+ 
Sbjct: 12  TLEGHNGWVTSLATSA-----GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76  TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
            V+ C  +  G    +AS+D T  +W+   G  E      GH+++V SV  +   + + +
Sbjct: 67  IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD------VLFSCSYDNTIKV 189
             RDK++ +W +    + +C++ L GH   V  V+  P          + S   D  +K 
Sbjct: 125 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
           W        N +  Q I     GH+S I  L+ +  G  + S   D  I +W        
Sbjct: 181 W--------NLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW-------- 223
Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDG--PSY 307
                A+ +   T+S   +  +FS+ +S      + A    ++ F      L+D   P +
Sbjct: 224 ---NLAAKKAXYTLSAQDE--VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
               K  + H +   S+ WS   + L A  +D+ +I++W++
Sbjct: 279 AGYSKAAEPHAV---SLAWSADGQTLFAGYTDN-VIRVWQV 315

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 36/244 (14%)
Query: 113 TLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMV 169
           TLEGH   V S++ +A    LL +  RDK++  W++   ++   V V   +GH+  V+  
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL 229
                     S S+D T+++W     D       Q       GH S + ++  + K   +
Sbjct: 72  TLTADGAYALSASWDKTLRLW-----DVATGETYQRFV----GHKSDVXSVDIDKKASXI 122
Query: 230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--AA 287
           +S S D TIK+W                + L T+ G++D       W  +  +     A 
Sbjct: 123 ISGSRDKTIKVW------------TIKGQCLATLLGHND-------WVSQVRVVPNEKAD 163
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDMDVNSVQWSPGERRLLASASDDGMIKI 345
           DDSV       D  +   +      +     H+ ++N++  SP +  L+ASA  DG I +
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIXL 222
Query: 346 WELA 349
           W LA
Sbjct: 223 WNLA 226

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 102/240 (42%), Gaps = 37/240 (15%)
Query: 12  REIQTLEGHTDRVWSLAWKP------TAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNC 65
           ++I++++      W+LA+ P      T    G   +F   SG K     E S  +R    
Sbjct: 113 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-----EYSLDTR---- 163
Query: 66  KAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS 125
                    + + S A+SP GK LA+ + D    I++   G  + + TLEGH   ++S++
Sbjct: 164 --------GKFILSIAYSPDGKYLASGAIDGIINIFDIATG--KLLHTLEGHAMPIRSLT 213
Query: 126 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 185
           ++    LL T   D  + I++V   N       L GHA  V  V + P  D  F  S  +
Sbjct: 214 FSPDSQLLVTASDDGYIKIYDVQHAN---LAGTLSGHASWVLNVAFCPD-DTHFVSSSSD 269
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
                W   T +    CV T  +    H   +W + +N  G K+VS  DD  I I+   I
Sbjct: 270 KSVKVWDVGTRT----CVHTFFD----HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI 321

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 107/250 (42%), Gaps = 46/250 (18%)
Query: 115 EGHENEVKSVSW------NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 168
           + H++ + SV+W      N+   +  +      VW W        +    L+GH   V  
Sbjct: 29  QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR---DERLDLQWSLEGHQLGVVS 85
Query: 169 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
           V    T+ +  S S D  I++W     D +N   +++I    +      W L+F+     
Sbjct: 86  VDISHTLPIAASSSLDAHIRLW-----DLENGKQIKSI----DAGPVDAWTLAFSPDSQY 136
Query: 229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAA 287
           L + +    + I+G     ++SG    S            + I S+ +S +G  +ASGA 
Sbjct: 137 LATGTHVGKVNIFG-----VESGKKEYSLD-------TRGKFILSIAYSPDGKYLASGAI 184
Query: 288 DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
           D  +  F     D+  G     LL   + H M + S+ +SP + +LL +ASDDG IKI++
Sbjct: 185 DGIINIF-----DIATGK----LLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYD 234
Query: 348 -----LANTL 352
                LA TL
Sbjct: 235 VQHANLAGTL 244

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 116/294 (39%), Gaps = 67/294 (22%)
Query: 16  TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
            +  HTD V+   +      DG     ASC  DKT+++++     +  + KA     H  
Sbjct: 617 VVRPHTDAVYHACFSQ----DGQR--IASCGADKTLQVFKAETGEKLLDIKA-----HED 665
Query: 76  TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASGTLL 133
            V  CA+S     +AT S D    IW+   G  + V T + H  +V    +   ++  LL
Sbjct: 666 EVLCCAFSSDDSYIATCSADKKVKIWDSATG--KLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 134 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW--- 190
           AT   D  + +W++   N+ EC + + GH   V   ++ P  ++L SCS D T+++W   
Sbjct: 724 ATGSNDFFLKLWDL---NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Query: 191 --------------------------------WAEDTDSD-----------NWHCVQTIS 207
                                           W+ D D             + H    ++
Sbjct: 781 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA 840
Query: 208 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD--GYASWRH 259
           E + GH STI    F+      V       +++W  D +R++  D  G+ SW H
Sbjct: 841 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID-SRLKVADCRGHLSWVH 893

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 92/442 (20%), Positives = 161/442 (36%), Gaps = 128/442 (28%)
Query: 16   TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS--------RFW---- 63
            T+ GHT+ V    + P         + ASCS D T+R+W+  +++        RF+    
Sbjct: 745  TMFGHTNSVNHCRFSPDD------ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 798
Query: 64   -----------------------------------NCKAVLEEMHT---RTVRSCAWSPS 85
                                               +   +L E+HT    T++ C +SP 
Sbjct: 799  DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 858
Query: 86   GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIW 145
              L   A       +W ++    + VA   GH + V  V ++  G+   T   D+++ +W
Sbjct: 859  DHLAVIALSQYCVELW-NIDSRLK-VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Query: 146  E------------------VMPGNEFECVSV-----LQGHAQDVKMVQWHPTMDVLFSCS 182
            E                  V   NE   ++V     LQ  A     + + P   V   C 
Sbjct: 917  ETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 976
Query: 183  YDNTIKVWWAEDTDSDNWHCVQTISESNN-------GHSSTIWALSFNAKGDKLVSCSDD 235
              +   V + ++  +     ++ I   NN       GH   +  + F A G  L+S S+D
Sbjct: 977  SPHLEYVAFGDEDGA-----IKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED 1031
Query: 236  LTIKIWGADITRMQSGDGYASWRHLCTISGY---HDRTIFSVHWSREG------------ 280
              I++W       Q+GD      H  T+  +    D  + S  WS +G            
Sbjct: 1032 SVIQVWN-----WQTGDYVFLQAHQETVKDFRLLQDSRLLS--WSFDGTVKVWNVITGRI 1084
Query: 281  ----------IIASGAADDSVQFFVESKDDLIDGPSYKML--LKKEKAHDMDVNSVQWSP 328
                      +++   + D+ +F   S D      S+ +L  L + K H+  V    +S 
Sbjct: 1085 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL 1144
Query: 329  GERRLLASASDDGMIKIWELAN 350
             +  LLA+  D+G I+IW +++
Sbjct: 1145 -DGILLATGDDNGEIRIWNVSD 1165

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 116/294 (39%), Gaps = 67/294 (22%)
Query: 16  TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
            +  HTD V+   +      DG     ASC  DKT+++++     +  + KA     H  
Sbjct: 610 VVRPHTDAVYHACFSQ----DGQR--IASCGADKTLQVFKAETGEKLLDIKA-----HED 658
Query: 76  TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASGTLL 133
            V  CA+S     +AT S D    IW+   G  + V T + H  +V    +   ++  LL
Sbjct: 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATG--KLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 134 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW--- 190
           AT   D  + +W++   N+ EC + + GH   V   ++ P  ++L SCS D T+++W   
Sbjct: 717 ATGSNDFFLKLWDL---NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Query: 191 --------------------------------WAEDTDSD-----------NWHCVQTIS 207
                                           W+ D D             + H    ++
Sbjct: 774 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA 833
Query: 208 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD--GYASWRH 259
           E + GH STI    F+      V       +++W  D +R++  D  G+ SW H
Sbjct: 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID-SRLKVADCRGHLSWVH 886

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 92/442 (20%), Positives = 161/442 (36%), Gaps = 128/442 (28%)
Query: 16   TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS--------RFW---- 63
            T+ GHT+ V    + P         + ASCS D T+R+W+  +++        RF+    
Sbjct: 738  TMFGHTNSVNHCRFSPDD------ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 791
Query: 64   -----------------------------------NCKAVLEEMHT---RTVRSCAWSPS 85
                                               +   +L E+HT    T++ C +SP 
Sbjct: 792  DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 851
Query: 86   GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIW 145
              L   A       +W ++    + VA   GH + V  V ++  G+   T   D+++ +W
Sbjct: 852  DHLAVIALSQYCVELW-NIDSRLK-VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Query: 146  E------------------VMPGNEFECVSV-----LQGHAQDVKMVQWHPTMDVLFSCS 182
            E                  V   NE   ++V     LQ  A     + + P   V   C 
Sbjct: 910  ETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 969
Query: 183  YDNTIKVWWAEDTDSDNWHCVQTISESNN-------GHSSTIWALSFNAKGDKLVSCSDD 235
              +   V + ++  +     ++ I   NN       GH   +  + F A G  L+S S+D
Sbjct: 970  SPHLEYVAFGDEDGA-----IKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED 1024
Query: 236  LTIKIWGADITRMQSGDGYASWRHLCTISGY---HDRTIFSVHWSREG------------ 280
              I++W       Q+GD      H  T+  +    D  + S  WS +G            
Sbjct: 1025 SVIQVWN-----WQTGDYVFLQAHQETVKDFRLLQDSRLLS--WSFDGTVKVWNVITGRI 1077
Query: 281  ----------IIASGAADDSVQFFVESKDDLIDGPSYKML--LKKEKAHDMDVNSVQWSP 328
                      +++   + D+ +F   S D      S+ +L  L + K H+  V    +S 
Sbjct: 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL 1137
Query: 329  GERRLLASASDDGMIKIWELAN 350
             +  LLA+  D+G I+IW +++
Sbjct: 1138 -DGILLATGDDNGEIRIWNVSD 1158

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 35/255 (13%)
Query: 114 LEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEV--MPGNE--FECVSVLQGHAQDVKM 168
           L GH+ E   +SWN +    L +   D ++ +W++   P      +  ++  GH   V+ 
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 169 VQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 227
           V WH   + LF S + D  + +W   DT ++N       S + + H++ +  LSFN   +
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIW---DTRNNN---TSKPSHTVDAHTAEVNCLSFNPYSE 294
Query: 228 KLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS--REGIIAS 284
            +++  S D T+ +W     +++          L +   + D  IF V WS   E I+AS
Sbjct: 295 FILATGSADKTVALWDLRNLKLK----------LHSFESHKDE-IFQVQWSPHNETILAS 343
Query: 285 GAADDSVQFFVESK-------DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
              D  +  +  SK       +D  DGP    LL     H   ++   W+P E  ++ S 
Sbjct: 344 SGTDRRLHVWDLSKIGEEQSTEDAEDGPP--ELLFIHGGHTAKISDFSWNPNEPWIICSV 401
Query: 338 SDDGMIKIWELANTL 352
           S+D ++++W++A  +
Sbjct: 402 SEDNIMQVWQMAENV 416

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 35/255 (13%)
Query: 114 LEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEV--MPGNE--FECVSVLQGHAQDVKM 168
           L GH+ E   +SWN +    L +   D ++ +W++   P      +  ++  GH   V+ 
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 169 VQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 227
           V WH   + LF S + D  + +W   DT ++N       S + + H++ +  LSFN   +
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIW---DTRNNN---TSKPSHTVDAHTAEVNCLSFNPYSE 290
Query: 228 KLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS--REGIIAS 284
            +++  S D T+ +W     +++          L +   + D  IF V WS   E I+AS
Sbjct: 291 FILATGSADKTVALWDLRNLKLK----------LHSFESHKDE-IFQVQWSPHNETILAS 339
Query: 285 GAADDSVQFF-------VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
              D  +  +        +S +D  DGP    LL     H   ++   W+P E  ++ S 
Sbjct: 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPP--ELLFIHGGHTAKISDFSWNPNEPWIICSV 397
Query: 338 SDDGMIKIWELANTL 352
           S+D ++++W++A  +
Sbjct: 398 SEDNIMQVWQMAENV 412

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 35/255 (13%)
Query: 114 LEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEV--MPGNE--FECVSVLQGHAQDVKM 168
           L GH+ E   +SWN +    L +   D ++ +W++   P      +  ++  GH   V+ 
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 169 VQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD 227
           V WH   + LF S + D  + +W   DT ++N       S + + H++ +  LSFN   +
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIW---DTRNNN---TSKPSHTVDAHTAEVNCLSFNPYSE 292
Query: 228 KLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS--REGIIAS 284
            +++  S D T+ +W     +++          L +   + D  IF V WS   E I+AS
Sbjct: 293 FILATGSADKTVALWDLRNLKLK----------LHSFESHKDE-IFQVQWSPHNETILAS 341
Query: 285 GAADDSVQFF-------VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA 337
              D  +  +        +S +D  DGP    LL     H   ++   W+P E  ++ S 
Sbjct: 342 SGTDRRLHVWDLSKIGEEQSTEDAEDGPP--ELLFIHGGHTAKISDFSWNPNEPWIICSV 399
Query: 338 SDDGMIKIWELANTL 352
           S+D ++++W++A  +
Sbjct: 400 SEDNIMQVWQMAENV 414

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 149/350 (42%), Gaps = 60/350 (17%)
Query: 7   GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
           G + L+ I      +  V+ L +     V G+         D T++IW+++       CK
Sbjct: 119 GRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLR--------DNTIKIWDKNT----LECK 166
Query: 67  AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW 126
            +L   HT +V    +    +++ T S D+T  +W+   G  E + TL  H   V  + +
Sbjct: 167 RILTG-HTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTG--EMLNTLIHHCEAVLHLRF 221
Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 186
           N    ++ TC +D+S+ +W++    +     VL GH   V +V +      + S S D T
Sbjct: 222 N--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRT 277
Query: 187 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGAD- 244
           IKVW     ++     V+T+    NGH   I  L +    D+L VS S D TI++W  + 
Sbjct: 278 IKVW-----NTSTCEFVRTL----NGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIEC 325
Query: 245 --ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQF--FVESKDD 300
               R+  G               H+  +  + +  + I+ SGA D  ++    V + D 
Sbjct: 326 GACLRVLEG---------------HEELVRCIRFDNKRIV-SGAYDGKIKVWDLVAALDP 369
Query: 301 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
               P+  + L+    H   V  +Q+   +   + S+S D  I IW+  N
Sbjct: 370 --RAPAGTLCLRTLVEHSGRVFRLQFDEFQ---IVSSSHDDTILIWDFLN 414

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 100/253 (39%), Gaps = 34/253 (13%)
Query: 14  IQTLEGHTDRVWSLAW-KPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
           I TL GH   VW + W  P  G      + ASCS D  V IW++      W+  AV   +
Sbjct: 46  IDTLTGHEGPVWRVDWAHPKFGT-----ILASCSYDGKVLIWKEENGR--WSQIAV-HAV 97
Query: 73  HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
           H+ +V S  W+P   G LL  AS D    + E           ++ H   V S SW A  
Sbjct: 98  HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW-APA 156
Query: 131 TL--------------LATCGRDKSVWIWEVMP-GNEFECVSVLQGHAQDVKMVQWHPTM 175
           T+                T G D  V IW+       +   S L+GH+  V+ V W PT+
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 176 ---DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
                L S S D T  + W +D +   W       E        +W  S++  G+ L   
Sbjct: 217 LLRSYLASVSQDRTCII-WTQDNEQGPWKKTLLKEEK---FPDVLWRASWSLSGNVLALS 272
Query: 233 SDDLTIKIWGADI 245
             D  + +W  ++
Sbjct: 273 GGDNKVTLWKENL 285

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 106/285 (37%), Gaps = 35/285 (12%)
Query: 33  AGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM--HTRTVRSCAWSPS--GKL 88
           A +D      A+CS DKT++I+E    +       +++ +  H   V    W+    G +
Sbjct: 15  AVLDYYGKRLATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTI 69
Query: 89  LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASGTLLATCGRDKSVWIWE 146
           LA+ S+D    IW++  G +  +A    H   V SV W  +  G LL     D  V + E
Sbjct: 70  LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129
Query: 147 VMPGNEFECVSVLQGHAQDVKMVQWHPTM-------------DVLFSCSYDNTIKVWWAE 193
                    + ++  HA  V    W P                   +   DN +K+ W  
Sbjct: 130 FKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI-WKY 187
Query: 194 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG 253
           ++D+  +    T+   ++      W+ +   +   L S S D T  IW  D       + 
Sbjct: 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQD-------NE 239
Query: 254 YASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES 297
              W+            ++   WS  G ++A    D+ V  + E+
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 31/254 (12%)
Query: 111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 170
           V     H   +     +  G  LATC  DK++ I+EV  G   + +  L GH   V  V 
Sbjct: 2   VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVD 60
Query: 171 W-HPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
           W HP    +L SCSYD  + +W  E+     W  +   +  +   +S  WA   +  G  
Sbjct: 61  WAHPKFGTILASCSYDGKVLIWKEEN---GRWSQIAVHAVHSASVNSVQWAP--HEYGPL 115
Query: 229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--- 285
           L+  S D  + +    +   ++G           I   H   + S  W+   I   G   
Sbjct: 116 LLVASSDGKVSV----VEFKENGTTSP------IIIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 286 AADDSVQFFVESKDDLI-------DGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLAS 336
              +S +F     D+L+       D  +Y +L    + H   V  V WSP    R  LAS
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 337 ASDDGMIKIWELAN 350
            S D    IW   N
Sbjct: 225 VSQDRTCIIWTQDN 238

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 24/190 (12%)
Query: 8   NYELRE-IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
           NY   E +   E H D + S+A  PT       P   S S D TV++W        W   
Sbjct: 83  NYNTGEKVVDFEAHPDYIRSIAVHPTK------PYVLSGSDDLTVKLWN-------WENN 129
Query: 67  AVLE---EMHTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK 122
             LE   E H   V   A++P      A+   D T  +W  +G          G E  V 
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-LGQSTPNFTLTTGQERGVN 188
Query: 123 SVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS 180
            V +        + T   D ++ IW+    +   CV+ L+GH  +V    +HPT+ ++ S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 181 CSYDNTIKVW 190
            S D T+K+W
Sbjct: 246 GSEDGTLKIW 255

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 46  SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG 105
           S D  +R++  +        K V  E H   +RS A  P+   + + S D T  +W +  
Sbjct: 74  SDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWE 127
Query: 106 GDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 164
            ++    T EGHE+ V  V++N    +  A+   D++V +W +  G      ++  G  +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQER 185
Query: 165 DVKMVQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 222
            V  V ++P  D   + + S D TIK+W     D     CV T+     GH S +    F
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIW-----DYQTKSCVATLE----GHMSNVSFAVF 236
Query: 223 NAKGDKLVSCSDDLTIKIWGADITRMQ 249
           +     ++S S+D T+KIW +   +++
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVE 263

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSV--WIWEVMPGNEFECVSVLQGHAQDV 166
           E V   E H + ++S++ + +   + +   D +V  W WE    N +      +GH   V
Sbjct: 88  EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFV 143
Query: 167 KMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 225
             V ++P     F+    D T+KVW +    + N+           G    +  + +   
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLT-------TGQERGVNYVDYYPL 195
Query: 226 GDK--LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 283
            DK  +++ SDDLTIKIW            Y +   + T+ G+     F+V      II 
Sbjct: 196 PDKPYMITASDDLTIKIW-----------DYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 284 SGAADDSVQ 292
           SG+ D +++
Sbjct: 245 SGSEDGTLK 253

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 108/261 (41%), Gaps = 42/261 (16%)
Query: 1   MEFLDDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS 60
           +E +  G     +I+ +EG         +  + G DGV  ++            E S+  
Sbjct: 38  VERIHGGGINTLDIEPVEGR--------YMLSGGSDGVIVLYD----------LENSSRQ 79
Query: 61  RFWNCKAVL------EEMHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVAT 113
            ++ CKAV        ++H  +V +  W P    +  ++SFD T  +W+    +    A 
Sbjct: 80  SYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT---NTLQTAD 136
Query: 114 LEGHENEVKSVSWNASGT---LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 170
           +   E  V S   +   T   L+A   R   V + ++  G+   C  +LQGH Q++  V 
Sbjct: 137 VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS---CSHILQGHRQEILAVS 193
Query: 171 WHPTMD-VLFSCSYDNTIKVWWAEDT-------DSDNWHCVQTISESNNGHSSTIWALSF 222
           W P  D +L + S D+ +K+W            D  N    Q +  +N  H+  +  L F
Sbjct: 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253
Query: 223 NAKGDKLVSCSDDLTIKIWGA 243
            + G  L++   D  +++W +
Sbjct: 254 TSDGLHLLTVGTDNRMRLWNS 274

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 24/190 (12%)
Query: 8   NYELRE-IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
           NY   E +   E H D + S+A  PT       P   S S D TV++W        W   
Sbjct: 83  NYNTGEKVVDFEAHPDYIRSIAVHPTK------PYVLSGSDDLTVKLWN-------WENN 129
Query: 67  AVLE---EMHTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVK 122
             LE   E H   V   A++P      A+   D T  +W  +G          G E  V 
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS-LGQSTPNFTLTTGQERGVN 188
Query: 123 SVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS 180
            V +        + T   D ++ IW+    +   CV+ L+GH  +V    +HPT+ ++ S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 181 CSYDNTIKVW 190
            S D T+K+W
Sbjct: 246 GSEDGTLKIW 255

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 46  SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG 105
           S D  +R++  +        K V  E H   +RS A  P+   + + S D T  +W +  
Sbjct: 74  SDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWE 127
Query: 106 GDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 164
            ++    T EGHE+ V  V++N    +  A+   D++V +W +  G      ++  G  +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQER 185
Query: 165 DVKMVQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 222
            V  V ++P  D   + + S D TIK+W     D     CV T+     GH S +    F
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIW-----DYQTKSCVATLE----GHMSNVSFAVF 236
Query: 223 NAKGDKLVSCSDDLTIKIWGADITRMQ 249
           +     ++S S+D T+KIW +   +++
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVE 263

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSV--WIWEVMPGNEFECVSVLQGHAQDV 166
           E V   E H + ++S++ + +   + +   D +V  W WE    N +      +GH   V
Sbjct: 88  EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFV 143
Query: 167 KMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 225
             V ++P     F+    D T+KVW +    + N+           G    +  + +   
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLT-------TGQERGVNYVDYYPL 195
Query: 226 GDK--LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 283
            DK  +++ SDDLTIKIW            Y +   + T+ G+     F+V      II 
Sbjct: 196 PDKPYMITASDDLTIKIW-----------DYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 284 SGAADDSVQ 292
           SG+ D +++
Sbjct: 245 SGSEDGTLK 253

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 100/253 (39%), Gaps = 34/253 (13%)
Query: 14  IQTLEGHTDRVWSLAW-KPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
           I TL GH   VW + W  P  G      + ASCS D  V IW++      W+  AV   +
Sbjct: 48  IDTLTGHEGPVWRVDWAHPKFGT-----ILASCSYDGKVLIWKEENGR--WSQIAV-HAV 99
Query: 73  HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
           H+ +V S  W+P   G LL  AS D    + E           ++ H   V S SW A  
Sbjct: 100 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW-APA 158
Query: 131 TL--------------LATCGRDKSVWIWEVMP-GNEFECVSVLQGHAQDVKMVQWHPTM 175
           T+                T G D  V IW+       +   S L+GH+  V+ V W PT+
Sbjct: 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 218
Query: 176 ---DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
                L S S D T  + W +D +   W       E        +W  S++  G+ L   
Sbjct: 219 LLRSYLASVSQDRTCII-WTQDNEQGPWKKTLLKEEK---FPDVLWRASWSLSGNVLALS 274
Query: 233 SDDLTIKIWGADI 245
             D  + +W  ++
Sbjct: 275 GGDNKVTLWKENL 287

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 31/254 (12%)
Query: 111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 170
           V     H   +     +  G  LATC  DK++ I+EV  G   + +  L GH   V  V 
Sbjct: 4   VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVD 62
Query: 171 W-HPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
           W HP    +L SCSYD  + +W  E+     W  +   +  +   +S  WA   +  G  
Sbjct: 63  WAHPKFGTILASCSYDGKVLIWKEEN---GRWSQIAVHAVHSASVNSVQWAP--HEYGPL 117
Query: 229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--- 285
           L+  S D  + +    +   ++G           I   H   + S  W+   I   G   
Sbjct: 118 LLVASSDGKVSV----VEFKENGTTSP------IIIDAHAIGVNSASWAPATIEEDGEHN 167
Query: 286 AADDSVQFFVESKDDLI-------DGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLAS 336
              +S +F     D+L+       D  +Y +L    + H   V  V WSP    R  LAS
Sbjct: 168 GTKESRKFVTGGADNLVKIWKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226
Query: 337 ASDDGMIKIWELAN 350
            S D    IW   N
Sbjct: 227 VSQDRTCIIWTQDN 240

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 100/253 (39%), Gaps = 34/253 (13%)
Query: 14  IQTLEGHTDRVWSLAW-KPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
           I TL GH   VW + W  P  G      + ASCS D  V IW++      W+  AV   +
Sbjct: 46  IDTLTGHEGPVWRVDWAHPKFGT-----ILASCSYDGKVLIWKEENGR--WSQIAV-HAV 97
Query: 73  HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
           H+ +V S  W+P   G LL  AS D    + E           ++ H   V S SW A  
Sbjct: 98  HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW-APA 156
Query: 131 TL--------------LATCGRDKSVWIWEVMP-GNEFECVSVLQGHAQDVKMVQWHPTM 175
           T+                T G D  V IW+       +   S L+GH+  V+ V W PT+
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 176 ---DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
                L S S D T  + W +D +   W       E        +W  S++  G+ L   
Sbjct: 217 LLRSYLASVSQDRTC-IIWTQDNEQGPWKKTLLKEEK---FPDVLWRASWSLSGNVLALS 272
Query: 233 SDDLTIKIWGADI 245
             D  + +W  ++
Sbjct: 273 GGDNKVTLWKENL 285

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 111/274 (40%), Gaps = 60/274 (21%)
Query: 121 VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS 180
           ++SV ++  G  LAT   D+ + IW++      + V +LQGH QD+  + + P+ D L S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDI---ENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 181 CSYDNTIKVW-----------WAEDT--------------------------DSDNWHCV 203
            S D T+++W             ED                           DS+    V
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 204 QTI---SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHL 260
           + +   +ES  GH  +++++ F   G  +VS S D ++K+W       +S D        
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS-DSKTPNSGT 301
Query: 261 CTIS--GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHD 318
           C ++  G+ D  +       +  I SG+ D  V F+     D   G    ML    + H 
Sbjct: 302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW-----DKKSGNPLLML----QGHR 352
Query: 319 MDVNSVQWSPG-----ERRLLASASDDGMIKIWE 347
             V SV  + G     E  + A+ S D   +IW+
Sbjct: 353 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 100/253 (39%), Gaps = 34/253 (13%)
Query: 14  IQTLEGHTDRVWSLAW-KPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
           I TL GH   VW + W  P  G      + ASCS D  V IW++      W+  AV   +
Sbjct: 46  IDTLTGHEGPVWRVDWAHPKFGT-----ILASCSYDGKVMIWKEENGR--WSQIAV-HAV 97
Query: 73  HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
           H+ +V S  W+P   G +L  AS D    + E           ++ H   V S SW A  
Sbjct: 98  HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW-APA 156
Query: 131 TL--------------LATCGRDKSVWIWEVMP-GNEFECVSVLQGHAQDVKMVQWHPTM 175
           T+                T G D  V IW+       +   S L+GH+  V+ V W PT+
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 176 ---DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
                + S S D T  + W +D +   W       E        +W  S++  G+ L   
Sbjct: 217 LLRSYMASVSQDRTCII-WTQDNEQGPWKKTLLKEEK---FPDVLWRASWSLSGNVLALS 272
Query: 233 SDDLTIKIWGADI 245
             D  + +W  ++
Sbjct: 273 GGDNKVTLWKENL 285

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 97/254 (38%), Gaps = 31/254 (12%)
Query: 111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 170
           V     H   +     +  G  +ATC  DK++ I+EV  G   + +  L GH   V  V 
Sbjct: 2   VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVD 60
Query: 171 W-HPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
           W HP    +L SCSYD  + +W  E+     W  +   +  +   +S  WA   +  G  
Sbjct: 61  WAHPKFGTILASCSYDGKVMIWKEEN---GRWSQIAVHAVHSASVNSVQWAP--HEYGPM 115
Query: 229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--- 285
           L+  S D  + +    +   ++G           I   H   + S  W+   I   G   
Sbjct: 116 LLVASSDGKVSV----VEFKENGTTSP------IIIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 286 AADDSVQFFVESKDDLI-------DGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLAS 336
              +S +F     D+L+       D  +Y +L    + H   V  V WSP    R  +AS
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224
Query: 337 ASDDGMIKIWELAN 350
            S D    IW   N
Sbjct: 225 VSQDRTCIIWTQDN 238

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 46  SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG 105
           S D  +R++  +        K V  E H   +RS A  P+   + + S D T  +W +  
Sbjct: 74  SDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWE 127
Query: 106 GDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 164
            ++    T EGHE+ V  V++N    +  A+   D++V +W +  G      ++  G  +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQER 185
Query: 165 DVKMVQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 222
            V  V ++P  D   + + S D TIK+W     D     CV T+     GH S +    F
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIW-----DYQTKSCVATLE----GHMSNVSFAVF 236
Query: 223 NAKGDKLVSCSDDLTIKIWGADITRMQ 249
           +     ++S S+D T+KIW +   +++
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVE 263

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSV--WIWEVMPGNEFECVSVLQGHAQDV 166
           E V   E H + ++S++ + +   + +   D +V  W WE    N +      +GH   V
Sbjct: 88  EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFV 143
Query: 167 KMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 225
             V ++P     F+    D T+KVW +    + N+           G    +  + +   
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLT-------TGQERGVNYVDYYPL 195
Query: 226 GDK--LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 283
            DK  +++ SDDLTIKIW            Y +   + T+ G+     F+V      II 
Sbjct: 196 PDKPYMITASDDLTIKIW-----------DYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 284 SGAADDSVQ 292
           SG+ D +++
Sbjct: 245 SGSEDGTLK 253

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 20/207 (9%)
Query: 46  SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG 105
           S D  +R++  +        K V  E H   +RS A  P+   + + S D T  +W +  
Sbjct: 74  SDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWE 127
Query: 106 GDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ 164
            ++    T EGHE+ V  V++N    +  A+   D++V +W +  G      ++  G  +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQER 185
Query: 165 DVKMVQWHPTMD--VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 222
            V  V ++P  D   + + S D TIK+W     D     CV T+     GH S +    F
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIW-----DYQTKSCVATLE----GHMSNVSFAVF 236
Query: 223 NAKGDKLVSCSDDLTIKIWGADITRMQ 249
           +     ++S S+D T+KIW +   +++
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVE 263

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSV--WIWEVMPGNEFECVSVLQGHAQDV 166
           E V   E H + ++S++ + +   + +   D +V  W WE    N +      +GH   V
Sbjct: 88  EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFV 143
Query: 167 KMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 225
             V ++P     F+    D T+KVW +    + N+           G    +  + +   
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVW-SLGQSTPNFTLT-------TGQERGVNYVDYYPL 195
Query: 226 GDK--LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA 283
            DK  +++ SDDLTIKIW            Y +   + T+ G+     F+V      II 
Sbjct: 196 PDKPYMITASDDLTIKIW-----------DYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 284 SGAADDSVQ 292
           SG+ D +++
Sbjct: 245 SGSEDGTLK 253

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 35/244 (14%)
Query: 7   GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
           G + ++  +TL+GH ++V  + W              S S D  V +W+      F   K
Sbjct: 50  GQFVMKTRRTLKGHGNKVLCMDWCKD------KRRIVSSSQDGKVIVWDS-----FTTNK 98
Query: 67  AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW-------EDVGGDYECVATLEGHEN 119
                M    V +CA++PSG  +A    D    ++       E++    + VA    H N
Sbjct: 99  EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM---HTN 155
Query: 120 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP--TMDV 177
            + + S+  S   + T   D +  +W+V  G   + +    GH  DV  +   P  T + 
Sbjct: 156 YLSACSFTNSDMQILTASGDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 178 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT 237
             S   D    VW     D  +  CVQ        H S + ++ +   GD   S SDD T
Sbjct: 213 FVSGGCDKKAMVW-----DMRSGQCVQAFET----HESDVNSVRYYPSGDAFASGSDDAT 263
Query: 238 IKIW 241
            +++
Sbjct: 264 CRLY 267

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 14/172 (8%)
Query: 72  MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-- 129
           MHT  + +C+++ S   + TAS D T  +W+   G  + + +  GH  +V  +    S  
Sbjct: 152 MHTNYLSACSFTNSDMQILTASGDGTCALWDVESG--QLLQSFHGHGADVLCLDLAPSET 209
Query: 130 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 189
           G    + G DK   +W++  G   +CV   + H  DV  V+++P+ D   S S D T ++
Sbjct: 210 GNTFVSGGCDKKAMVWDMRSG---QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
           +   D  +D    + +      G SS  ++LS    G  L +  +D TI +W
Sbjct: 267 Y---DLRADREVAIYSKESIIFGASSVDFSLS----GRLLFAGYNDYTINVW 311

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 146/343 (42%), Gaps = 46/343 (13%)
Query: 17  LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLE----EM 72
           L GH   V SLA   T      A    S S DKT+  W  +       C   L     E 
Sbjct: 9   LTGHRGWVTSLACPQTPET---ATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEG 65
Query: 73  HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 132
           H+  V   A S +G    +AS+D +  +W    G  +C     GH  +V SV+++     
Sbjct: 66  HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG--QCQYKFLGHTKDVLSVAFSPDNRQ 123
Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQ--GHAQDVKMVQWHPTMD--VLFSCSYDNTIK 188
           + + GRD ++ +W V    + EC+  L    H   V  V++ P++D  V+ S  +DN +K
Sbjct: 124 IVSGGRDNALRVWNV----KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 189 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 248
           VW     D      V  +     GH++ + +++ +  G    S   D   ++W  D+T+ 
Sbjct: 180 VW-----DLATGRLVTDL----KGHTNYVTSVTVSPDGSLCASSDKDGVARLW--DLTKG 228
Query: 249 QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFF-VESKDDLID-GPS 306
           ++    A+   +  I    +R     +W         A +  ++ F +E+KD +++  P 
Sbjct: 229 EALSEMAAGAPINQICFSPNR-----YW------MCAATEKGIRIFDLENKDIIVELAPE 277
Query: 307 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 349
           +    +  K    +  S+ WS  +   L S   D +I++W ++
Sbjct: 278 H----QGSKKIVPECVSIAWS-ADGSTLYSGYTDNVIRVWGVS 315

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 36/285 (12%)
Query: 7   GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
           G  ++R  +TL GH  +++++ W    G D  + +  S S D  + IW+   ++     K
Sbjct: 52  GRIQMRTRRTLRGHLAKIYAMHW----GTD--SRLLVSASQDGKLIIWDSYTTN-----K 100
Query: 67  AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSV 124
                + +  V +CA++PSG  +A    D    I+  +   G+      L GH   +   
Sbjct: 101 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 160
Query: 125 SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 184
            +     ++ + G D +  +W++      +  +   GH  DV  +   P   +  S + D
Sbjct: 161 RFLDDNQIVTSSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 216
Query: 185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 244
            + K+W     D     C QT +    GH S I A+ F   G+   + SDD T +++   
Sbjct: 217 ASAKLW-----DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-- 265
Query: 245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 289
              +++     ++ H   I G     I SV +S+ G +     DD
Sbjct: 266 ---LRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 302

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 36/285 (12%)
Query: 7   GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
           G  ++R  +TL GH  +++++ W    G D  + +  S S D  + IW+   ++     K
Sbjct: 41  GRIQMRTRRTLRGHLAKIYAMHW----GTD--SRLLVSASQDGKLIIWDSYTTN-----K 89
Query: 67  AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSV 124
                + +  V +CA++PSG  +A    D    I+  +   G+      L GH   +   
Sbjct: 90  VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 125 SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 184
            +     ++ + G D +  +W++      +  +   GH  DV  +   P   +  S + D
Sbjct: 150 RFLDDNQIVTSSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 244
            + K+W     D     C QT +    GH S I A+ F   G+   + SDD T +++   
Sbjct: 206 ASAKLW-----DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-- 254
Query: 245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 289
              +++     ++ H   I G     I SV +S+ G +     DD
Sbjct: 255 ---LRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 291

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 36/285 (12%)
Query: 7   GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
           G  ++R  +TL GH  +++++ W    G D  + +  S S D  + IW+   ++     K
Sbjct: 41  GRIQMRTRRTLRGHLAKIYAMHW----GTD--SRLLVSASQDGKLIIWDSYTTN-----K 89
Query: 67  AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSV 124
                + +  V +CA++PSG  +A    D    I+  +   G+      L GH   +   
Sbjct: 90  VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 125 SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 184
            +     ++ + G D +  +W++      +  +   GH  DV  +   P   +  S + D
Sbjct: 150 RFLDDNQIVTSSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 244
            + K+W     D     C QT +    GH S I A+ F   G+   + SDD T +++   
Sbjct: 206 ASAKLW-----DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-- 254
Query: 245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 289
              +++     ++ H   I G     I SV +S+ G +     DD
Sbjct: 255 ---LRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 291

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 36/285 (12%)
Query: 7   GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
           G  ++R  +TL GH  +++++ W    G D  + +  S S D  + IW+   ++     K
Sbjct: 41  GRIQMRTRRTLRGHLAKIYAMHW----GTD--SRLLLSASQDGKLIIWDSYTTN-----K 89
Query: 67  AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSV 124
                + +  V +CA++PSG  +A    D    I+  +   G+      L GH   +   
Sbjct: 90  VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 125 SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 184
            +     ++ + G D +  +W++      +  +   GH  DV  +   P   +  S + D
Sbjct: 150 RFLDDNQIVTSSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 244
            + K+W     D     C QT +    GH S I A+ F   G+   + SDD T +++   
Sbjct: 206 ASAKLW-----DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-- 254
Query: 245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 289
              +++     ++ H   I G     I SV +S+ G +     DD
Sbjct: 255 ---LRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 291

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 119/285 (41%), Gaps = 36/285 (12%)
Query: 7   GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
           G  ++R  +TL GH  +++++ W    G D  + +  S S D  + IW+   ++     K
Sbjct: 41  GRIQMRTRRTLRGHLAKIYAMHW----GTD--SRLLLSASQDGKLIIWDSYTTN-----K 89
Query: 67  AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW--EDVGGDYECVATLEGHENEVKSV 124
                + +  V +CA++PSG  +A    D    I+  +   G+      L GH   +   
Sbjct: 90  VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 125 SWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 184
            +     ++ + G D +  +W++      +  +   GH  DV  +   P   +  S + D
Sbjct: 150 RFLDDNQIVTSSG-DTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 244
            + K+W     D     C QT +    GH S I A+ F   G+   + SDD T +++   
Sbjct: 206 ASAKLW-----DVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDATCRLFD-- 254
Query: 245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD 289
              +++     ++ H   I G     I SV +S+ G +     DD
Sbjct: 255 ---LRADQELMTYSHDNIICG-----ITSVSFSKSGRLLLAGYDD 291

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 32/239 (13%)
Query: 10  ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL 69
           + + ++ +  H+ RV SL+W            +   SG ++  I       R        
Sbjct: 189 QQKRLRNMTSHSARVGSLSWN----------SYILSSGSRSGHIHHHDV--RVAEHHVAT 236
Query: 70  EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWN 127
              H++ V    W+P G+ LA+   D    +W    G+  +  + T   H+  VK+V+W 
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 128 A-SGTLLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-- 182
                +LAT G   D+ + IW V  G    C+S +  H+Q V  + W P    L S    
Sbjct: 297 PWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGF 352
Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
             N + +W         +  +  ++E   GH+S + +L+ +  G  + S + D T+++W
Sbjct: 353 AQNQLVIW--------KYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 51/251 (20%)
Query: 17  LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRT 76
           L GH   VW+L +           +  S S D+TVR+W+         C   + E H  T
Sbjct: 158 LSGHDGGVWALKYAH-------GGILVSGSTDRTVRVWDIKKG-----CCTHVFEGHNST 205
Query: 77  VR--SCAWSPSGKLLATASFDATTCIWE--------DVGGDYE-------------CVAT 113
           VR        + K + T S D T  +W+        D G +++              V  
Sbjct: 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265
Query: 114 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 173
           L GH   V++VS    G ++ +   D ++ +W+V    + +C+ +L GH   +    +  
Sbjct: 266 LRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVA---QMKCLYILSGHTDRIYSTIYDH 320
Query: 174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 233
                 S S D TI++W     D +N   + T+     GH++ +  L  + K   LVS +
Sbjct: 321 ERKRCISASMDTTIRIW-----DLENGELMYTLQ----GHTALVGLLRLSDKF--LVSAA 369
Query: 234 DDLTIKIWGAD 244
            D +I+ W A+
Sbjct: 370 ADGSIRGWDAN 380

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 98/253 (38%), Gaps = 34/253 (13%)
Query: 14  IQTLEGHTDRVWSLAW-KPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
           I TL GH   VW + W  P  G      + ASCS D  V IW++      W+  AV   +
Sbjct: 46  IDTLTGHEGPVWRVDWAHPKFGT-----ILASCSYDGKVXIWKEENGR--WSQIAV-HAV 97
Query: 73  HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
           H+ +V S  W+P   G  L  AS D    + E           ++ H   V S SW A  
Sbjct: 98  HSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW-APA 156
Query: 131 TL--------------LATCGRDKSVWIWEVMP-GNEFECVSVLQGHAQDVKMVQWHPTM 175
           T+                T G D  V IW+       +   S L+GH+  V+ V W PT+
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 176 ---DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC 232
                  S S D T  + W +D +   W       E        +W  S++  G+ L   
Sbjct: 217 LLRSYXASVSQDRTCII-WTQDNEQGPWKKTLLKEEK---FPDVLWRASWSLSGNVLALS 272
Query: 233 SDDLTIKIWGADI 245
             D  + +W  ++
Sbjct: 273 GGDNKVTLWKENL 285

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 95/254 (37%), Gaps = 31/254 (12%)
Query: 111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ 170
           V     H   +     +  G   ATC  DK++ I+EV  G   + +  L GH   V  V 
Sbjct: 2   VVIANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVD 60
Query: 171 W-HPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
           W HP    +L SCSYD  + +W  E+     W  +   +  +   +S  WA   +  G  
Sbjct: 61  WAHPKFGTILASCSYDGKVXIWKEEN---GRWSQIAVHAVHSASVNSVQWAP--HEYGPX 115
Query: 229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG--- 285
           L+  S D  + +    +   ++G           I   H   + S  W+   I   G   
Sbjct: 116 LLVASSDGKVSV----VEFKENGTTSP------IIIDAHAIGVNSASWAPATIEEDGEHN 165
Query: 286 AADDSVQFFVESKDDLI-------DGPSYKMLLKKEKAHDMDVNSVQWSPGE--RRLLAS 336
              +S +F     D+L+       D  +Y +L    + H   V  V WSP    R   AS
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNSDAQTY-VLESTLEGHSDWVRDVAWSPTVLLRSYXAS 224
Query: 337 ASDDGMIKIWELAN 350
            S D    IW   N
Sbjct: 225 VSQDRTCIIWTQDN 238

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 32/239 (13%)
Query: 10  ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL 69
           + + ++ +  H+ RV SL+W            +   SG ++  I       R        
Sbjct: 178 QQKRLRNMTSHSARVGSLSWN----------SYILSSGSRSGHIHHHDV--RVAEHHVAT 225
Query: 70  EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWN 127
              H++ V    W+P G+ LA+   D    +W    G+  +  + T   H+  VK+V+W 
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 128 A-SGTLLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-- 182
                +LAT G   D+ + IW V  G    C+S +  H+Q V  + W P    L S    
Sbjct: 286 PWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGF 341
Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
             N + +W         +  +  ++E   GH+S + +L+ +  G  + S + D T+++W
Sbjct: 342 AQNQLVIW--------KYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 32/239 (13%)
Query: 10  ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL 69
           + + ++ +  H+ RV SL+W            +   SG ++  I       R        
Sbjct: 98  QQKRLRNMTSHSARVGSLSWNS----------YILSSGSRSGHIHHHDV--RVAEHHVAT 145
Query: 70  EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWN 127
              H++ V    W+P G+ LA+   D    +W    G+  +  + T   H+  VK+V+W 
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 128 A-SGTLLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-- 182
                +LAT G   D+ + IW V  G    C+S +  H+Q V  + W P    L S    
Sbjct: 206 PWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGF 261
Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
             N + +W         +  +  ++E   GH+S + +L+ +  G  + S + D T+++W
Sbjct: 262 AQNQLVIW--------KYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/336 (19%), Positives = 134/336 (39%), Gaps = 34/336 (10%)
Query: 16  TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
           TL+GH   V  +A  P         +  S S DKT+ +W+ +     +         H+ 
Sbjct: 33  TLKGHNGWVTQIATTPQ-----FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 87
Query: 76  TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
            V     S  G+   + S+D T  +W+   G         GH  +V SV++++    + +
Sbjct: 88  FVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQIVS 145
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP--TMDVLFSCSYDNTIKVWWAE 193
             RDK++ +W  +   ++      + H++ V  V++ P  +  ++ SC +D  +KVW   
Sbjct: 146 GSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 203
Query: 194 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG 253
           +      H          GH+  +  ++ +  G    S   D    +W  +         
Sbjct: 204 NCKLKTNHI---------GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN--------- 245
Query: 254 YASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 313
               +HL T+ G     I ++ +S        A   S++ +      ++D    +++   
Sbjct: 246 --EGKHLYTLDG--GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 301
Query: 314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA 349
            KA      S+ WS   + L A  +D+ ++++W++ 
Sbjct: 302 SKAEPPQCTSLAWSADGQTLFAGYTDN-LVRVWQVT 336

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 38/253 (15%)
Query: 14  IQTLEGHTDRVWSLAW-KPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
           I  L GH   VW +AW  P  G      + ASCS D+ V IW +   +  W  K+     
Sbjct: 50  IADLRGHEGPVWQVAWAHPMYG-----NILASCSYDRKVIIWREENGT--WE-KSHEHAG 101
Query: 73  HTRTVRSCAWSPS--GKLLATASFDATTCIWEDVG-GDYECVATLEGHENEVKSVSWNAS 129
           H  +V S  W+P   G +LA  S D    +    G G +E       H     +VSW  +
Sbjct: 102 HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA 161
Query: 130 ---GTLL--------------ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH 172
              G+L+              A+ G D  + +W+     +++    L+ H+  V+ V W 
Sbjct: 162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA 221
Query: 173 PTMDV----LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
           P++ +    + SCS D  + +W  +D  S+ W   + + + N+     +W +S++   + 
Sbjct: 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTW-SPKLLHKFND----VVWHVSWSITANI 276
Query: 229 LVSCSDDLTIKIW 241
           L     D  + +W
Sbjct: 277 LAVSGGDNKVTLW 289

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 113/291 (38%), Gaps = 39/291 (13%)
Query: 33  AGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM--HTRTVRSCAWSPS--GKL 88
           A +D      A+CS D++V+I++     +      ++ ++  H   V   AW+    G +
Sbjct: 19  AQMDYYGTRLATCSSDRSVKIFDVRNGGQI-----LIADLRGHEGPVWQVAWAHPMYGNI 73
Query: 89  LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWE 146
           LA+ S+D    IW +  G +E      GH++ V SV W     G +LA    D ++ +  
Sbjct: 74  LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT 133
Query: 147 VMPGNEFECVSVLQGHAQDVKMVQWHPT-----------------MDVLFSCSYDNTIKV 189
                ++E   +   H      V W P                  +    S   DN IK+
Sbjct: 134 YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL 193
Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
           W  ++ +   W   Q +   ++      WA S       + SCS D  + IW  D     
Sbjct: 194 W--KEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD----- 246
Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWS-REGIIASGAADDSVQFFVESKD 299
             D  ++      +  ++D  ++ V WS    I+A    D+ V  + ES D
Sbjct: 247 --DASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKESVD 294

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 105/255 (41%), Gaps = 48/255 (18%)
Query: 117 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW-HPTM 175
           HE+ +     +  GT LATC  D+SV I++V  G +   ++ L+GH   V  V W HP  
Sbjct: 12  HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMY 70
Query: 176 -DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--GDKLVSC 232
            ++L SCSYD  + +W  E+   +        S  + GH S++ ++ +     G  L   
Sbjct: 71  GNILASCSYDRKVIIWREENGTWEK-------SHEHAGHDSSVNSVCWAPHDYGLILACG 123
Query: 233 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI----------- 281
           S D  I         + +  G   W  +  I+  H     +V W+   +           
Sbjct: 124 SSDGAIS--------LLTYTGEGQWE-VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQ 174
Query: 282 -------IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG---ER 331
                   ASG  D+ ++ + E +D       +K   K E AH   V  V W+P      
Sbjct: 175 KPNYIKRFASGGCDNLIKLWKEEEDG-----QWKEEQKLE-AHSDWVRDVAWAPSIGLPT 228
Query: 332 RLLASASDDGMIKIW 346
             +AS S DG + IW
Sbjct: 229 STIASCSQDGRVFIW 243

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/335 (19%), Positives = 134/335 (40%), Gaps = 34/335 (10%)
Query: 16  TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
           TL+GH   V  +A  P         +  S S DKT+ +W+ +     +         H+ 
Sbjct: 10  TLKGHNGWVTQIATTPQ-----FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 64
Query: 76  TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
            V     S  G+   + S+D T  +W+   G         GH  +V SV++++    + +
Sbjct: 65  FVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQIVS 122
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP--TMDVLFSCSYDNTIKVWWAE 193
             RDK++ +W  +   ++      + H++ V  V++ P  +  ++ SC +D  +KVW   
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180
Query: 194 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG 253
           +      H          GH+  +  ++ +  G    S   D    +W  +         
Sbjct: 181 NCKLKTNHI---------GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN--------- 222
Query: 254 YASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 313
               +HL T+ G     I ++ +S        A   S++ +      ++D    +++   
Sbjct: 223 --EGKHLYTLDG--GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 278
Query: 314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
            KA      S+ WS   + L A  +D+ ++++W++
Sbjct: 279 SKAEPPQCTSLAWSADGQTLFAGYTDN-LVRVWQV 312

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 51/251 (20%)
Query: 17  LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRT 76
           L GH   VW+L +           +  S S D+TVR+W+         C   + E H  T
Sbjct: 158 LSGHDGGVWALKYAH-------GGILVSGSTDRTVRVWDIKKG-----CCTHVFEGHNST 205
Query: 77  VR--SCAWSPSGKLLATASFDATTCIWE--------DVGGDYE-------------CVAT 113
           VR        + K + T S D T  +W+        D G +++              V  
Sbjct: 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265
Query: 114 LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP 173
           L GH   V++VS    G ++ +   D ++ +W+V    + +C+ +L GH   +    +  
Sbjct: 266 LRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVA---QXKCLYILSGHTDRIYSTIYDH 320
Query: 174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS 233
                 S S D TI++W     D +N     T+     GH++ +  L  + K   LVS +
Sbjct: 321 ERKRCISASXDTTIRIW-----DLENGELXYTLQ----GHTALVGLLRLSDKF--LVSAA 369
Query: 234 DDLTIKIWGAD 244
            D +I+ W A+
Sbjct: 370 ADGSIRGWDAN 380

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 28/236 (11%)
Query: 15  QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT 74
           +TL+GH+ +V+SL W P            S S D  + +W    S +    K     +H 
Sbjct: 60  RTLQGHSGKVYSLDWTPEKN------WIVSASQDGRLIVWNALTSQKTHAIK-----LHC 108
Query: 75  RTVRSCAWSPSGKLLATASFDATTCIWE-----DVGGDYECVATLEGHENEVKSVSWNA- 128
             V  CA++P+G+ +A    D+   I+      D  G+      L GH+    S  +   
Sbjct: 109 PWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD 168
Query: 129 SGTLLATCGRDKSVWIWEVMPGNEFECVS--VLQGHAQDVKMVQWHP-TMDVLFSCSYDN 185
             T L T   D++  +W+V  G            GH  DV  +  +    ++  S S D 
Sbjct: 169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT 228
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
           T+++W        +         + +GH   I ++ F   G +  + SDD T +++
Sbjct: 229 TVRLW--------DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/244 (20%), Positives = 101/244 (41%), Gaps = 22/244 (9%)
Query: 107 DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV 166
           D  C  TL+GH  +V S+ W      + +  +D  + +W  +   +   + +   H   V
Sbjct: 55  DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL---HCPWV 111
Query: 167 KMVQWHPTMDVLFSCSYDNTIKVW-WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 225
               + P    +     D+   ++  +   D D    V  +   + G++S+   +    +
Sbjct: 112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP--DQ 169
Query: 226 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY-HDRTIFSVHWSREGIIAS 284
             +L++ S D T  +W  D+T  Q    + S       SG+  D    S++     +  S
Sbjct: 170 ETRLITGSGDQTCVLW--DVTTGQRISIFGSE----FPSGHTADVLSLSINSLNANMFIS 223
Query: 285 GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK 344
           G+ D +V+ +        D       ++    H+ D+NSV++ P  +R   + SDDG  +
Sbjct: 224 GSCDTTVRLW--------DLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCR 274
Query: 345 IWEL 348
           ++++
Sbjct: 275 LFDM 278

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 18/228 (7%)
Query: 16  TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
           T+  HTD V ++A  P    D    +  S S DK++ +W+ +   + +         H+ 
Sbjct: 377 TMRAHTDMVTAIA-TPIDNAD----IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH 431
Query: 76  TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
            V     S  G+   + S+D    +W+   G         GH  +V SV+++     + +
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQIVS 489
Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT--MDVLFSCSYDNTIKVWWAE 193
             RD+++ +W  +   ++      +GH   V  V++ P      + S S+D T+KVW   
Sbjct: 490 ASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW--- 546
Query: 194 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
             +  N     T++    GH+  +  ++ +  G    S   D  + +W
Sbjct: 547 --NLSNCKLRSTLA----GHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 27/238 (11%)
Query: 17  LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWE--QSASSRFWNCKAVLEEMHT 74
           LEGH+D V S+    +   +  +PV  S S DKTV IW+  +   + ++         H 
Sbjct: 17  LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 75  RTVRSCAWSPSGKLLATASFDATTCIWE-DVGGDYECVATLEGHENEVKSVSWNASGTLL 133
             V   A S       ++S+D T  +W+   G  Y+      GH++EV SV+++     +
Sbjct: 77  HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNRQI 133
Query: 134 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD----------VLFSCSY 183
            + G ++ + +W ++   +F      + H+  V  V++ P M              S  +
Sbjct: 134 LSAGAEREIKLWNILGECKFSSAEK-ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192
Query: 184 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
           D  +KVW      + N+    T       H S +  LS +  G  + +   D  + IW
Sbjct: 193 DGRLKVW------NTNFQIRYTFK----AHESNVNHLSISPNGKYIATGGKDKKLLIW 240

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 12  REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK--AVL 69
           + +  + GHT  V  +AW P         V AS S D TV +WE          +   + 
Sbjct: 72  KNVPLVXGHTAPVLDIAWXPHNDN-----VIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 70  EEMHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA 128
            E HT+ V   AW P+ + +L +A  D    +W+   G        + H + + SV W+ 
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 129 SGTLLATCGRDKSVWIWEVMPGN 151
            G L+ T  RDK V + E   G 
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGT 209

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 111 VATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEF----ECVSVLQGHAQD 165
           V  + GH   V  ++W   +  ++A+   D +V +WE+  G       E V  L+GH + 
Sbjct: 74  VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 166 VKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 224
           V +V WHPT  +VL S   DN I VW     D      V T+    + H  TI+++ ++ 
Sbjct: 134 VGIVAWHPTAQNVLLSAGXDNVILVW-----DVGTGAAVLTLGP--DVHPDTIYSVDWSR 186
Query: 225 KGDKLVSCSDDLTIKI 240
            G  + +   D  +++
Sbjct: 187 DGALICTSCRDKRVRV 202

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 12  REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK--AVL 69
           + +  + GHT  V  +AW P         V AS S D TV +WE          +   + 
Sbjct: 72  KNVPLVCGHTAPVLDIAWCPHNDN-----VIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 70  EEMHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA 128
            E HT+ V   AW P+ + +L +A  D    +W+   G        + H + + SV W+ 
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 129 SGTLLATCGRDKSVWIWEVMPGN 151
            G L+ T  RDK V + E   G 
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGT 209

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 111 VATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEF----ECVSVLQGHAQD 165
           V  + GH   V  ++W   +  ++A+   D +V +WE+  G       E V  L+GH + 
Sbjct: 74  VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 166 VKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA 224
           V +V WHPT  +VL S   DN I VW     D      V T+    + H  TI+++ ++ 
Sbjct: 134 VGIVAWHPTAQNVLLSAGCDNVILVW-----DVGTGAAVLTLGP--DVHPDTIYSVDWSR 186
Query: 225 KGDKLVSCSDDLTIKI 240
            G  + +   D  +++
Sbjct: 187 DGALICTSCRDKRVRV 202

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 36/241 (14%)
Query: 14  IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH 73
           + TL GH   V SL+++     DGV     S S DKT ++W++   S  +N +A     H
Sbjct: 97  LYTLIGHQGNVCSLSFQ-----DGVV---ISGSWDKTAKVWKE--GSLVYNLQA-----H 141
Query: 74  TRTV-RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG-HENEVKSVSWNASGT 131
             +V  +   S S     TAS D T  +W+    + + + T  G H + V+ ++    G 
Sbjct: 142 NASVWDAKVVSFSENKFLTASADKTIKLWQ----NDKVIKTFSGIHNDVVRHLAVVDDGH 197
Query: 132 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 191
            + +C  D  + + +   G   + +   +GH   V  ++  P  D++ SC  D T+++W 
Sbjct: 198 FI-SCSNDGLIKLVDXHTG---DVLRTYEGHESFVYCIKLLPNGDIV-SCGEDRTVRIWS 252
Query: 192 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 251
            E+        +  IS         IW++   + GD +V  SD+L ++I+  + +R  S 
Sbjct: 253 KENGSLKQVITLPAIS---------IWSVDCXSNGDIIVGSSDNL-VRIFSQEKSRWASE 302
Query: 252 D 252
           D
Sbjct: 303 D 303

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 40/224 (17%)
Query: 80  CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEV---KSVSWNASGTLLATC 136
           C+ S    ++ + S+D T  +W++       V  L+ H   V   K VS++ +  L A+ 
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKE----GSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163
Query: 137 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKVWWAED 194
             DK++ +W+    N+ + +    G   DV  V+    +D     SCS D  IK+     
Sbjct: 164 --DKTIKLWQ----ND-KVIKTFSGIHNDV--VRHLAVVDDGHFISCSNDGLIKLVDXHT 214
Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY 254
            D         +  +  GH S ++ +     GD +VSC +D T++IW  +          
Sbjct: 215 GD---------VLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKE---------N 255
Query: 255 ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK 298
            S + + T+      +I+SV     G I  G++D+ V+ F + K
Sbjct: 256 GSLKQVITLPAI---SIWSVDCXSNGDIIVGSSDNLVRIFSQEK 296

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 185
           N S  LLA  G   S  I  ++     +C+    GH   +  +++HP   ++L S S D+
Sbjct: 118 NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 174
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
            +++W  + TD+     +  I     GH   + +  ++  G+K++SC  D ++K+W  + 
Sbjct: 175 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 228
Query: 246 TRMQSG 251
            RM + 
Sbjct: 229 KRMMNA 234

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 159
           E ++  + H  EV SVSWN +GT+L++ G D  V +W+    NEF+C+SV+
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVI 347

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 112/254 (44%), Gaps = 28/254 (11%)
Query: 116 GHENEVKSVSWNASGTLLATCGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPT 174
           GH++ V  V ++  G  +ATC  D+ + ++++    + +E     + H   +  + W   
Sbjct: 9   GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 175 M--DVLFSCSYDNTIKVWWAEDTDSD-----NWHCVQTISESNNGHSSTIWALSFNAKGD 227
               ++ S SYD T+K+ W ED D +      W+ + T+++S     S  +A +    G 
Sbjct: 69  EYGRIIASASYDKTVKL-WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH--LGL 125
Query: 228 KLVSCSDDLTIKIWGA-DITRMQSGDGYASWRHLCTISGYHDRTIFSVHW-----SREGI 281
           KL    +D  ++++ A + + ++S    +  + L      H ++ F + W     S E +
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185
Query: 282 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR---LLASAS 338
             S  A +    +   KD  +       +  K   H   + S+ W+P   R   L+A+  
Sbjct: 186 AVS--ALEQAIIYQRGKDGKL------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237
Query: 339 DDGMIKIWELANTL 352
            DG I+I+++   L
Sbjct: 238 KDGRIRIFKITEKL 251

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 159
           E ++  + H  EV SVSWN +GT+L++ G D  V +W+    NEF+C+SV+
Sbjct: 295 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVI 345

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 112/254 (44%), Gaps = 28/254 (11%)
Query: 116 GHENEVKSVSWNASGTLLATCGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPT 174
           GH++ V  V ++  G  +ATC  D+ + ++++    + +E     + H   +  + W   
Sbjct: 7   GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 175 M--DVLFSCSYDNTIKVWWAEDTDSD-----NWHCVQTISESNNGHSSTIWALSFNAKGD 227
               ++ S SYD T+K+ W ED D +      W+ + T+++S     S  +A +    G 
Sbjct: 67  EYGRIIASASYDKTVKL-WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH--LGL 123
Query: 228 KLVSCSDDLTIKIWGA-DITRMQSGDGYASWRHLCTISGYHDRTIFSVHW-----SREGI 281
           KL    +D  ++++ A + + ++S    +  + L      H ++ F + W     S E +
Sbjct: 124 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 183
Query: 282 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR---LLASAS 338
             S  A +    +   KD  +       +  K   H   + S+ W+P   R   L+A+  
Sbjct: 184 AVS--ALEQAIIYQRGKDGKL------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 235
Query: 339 DDGMIKIWELANTL 352
            DG I+I+++   L
Sbjct: 236 KDGRIRIFKITEKL 249

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 185
           N S  LLA  G   S  I  ++     +C+    GH   +  +++HP   ++L S S D+
Sbjct: 77  NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 133
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
            +++W  + TD+     +  I     GH   + +  ++  G+K++SC  D ++K+W  + 
Sbjct: 134 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 187
Query: 246 TRMQSG 251
            RM + 
Sbjct: 188 KRMMNA 193

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 185
           N S  LLA  G   S  I  ++     +C+    GH   +  +++HP   ++L S S D+
Sbjct: 81  NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
            +++W  + TD+     +  I     GH   + +  ++  G+K++SC  D ++K+W  + 
Sbjct: 138 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
Query: 246 TRMQSG 251
            RM + 
Sbjct: 192 KRMMNA 197

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 185
           N S  LLA  G   S  I  ++     +C+    GH   +  +++HP   ++L S S D+
Sbjct: 82  NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 138
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
            +++W  + TD+     +  I     GH   + +  ++  G+K++SC  D ++K+W  + 
Sbjct: 139 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192
Query: 246 TRMQSG 251
            RM + 
Sbjct: 193 KRMMNA 198

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDN 185
           N S  LLA  G   S  I  ++     +C+    GH   +  +++HP   ++L S S D+
Sbjct: 81  NTSHPLLAVAG---SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
            +++W  + TD+     +  I     GH   + +  ++  G+K++SC  D ++K+W  + 
Sbjct: 138 ALRLWNIQ-TDT-----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
Query: 246 TRMQSG 251
            RM + 
Sbjct: 192 KRMMNA 197

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 29/231 (12%)
Query: 70  EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 129
           E  H  TV     SPSG   A+        IW+     +    T+      VK +SW++ 
Sbjct: 57  EHSHQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 114
Query: 130 GTLLATCGRDKS----VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYD 184
              +A  G  +     V++++    N       L G A+ +  V + P+    + S S D
Sbjct: 115 SKRIAAVGEGRERFGHVFLFDTGTSN-----GNLTGQARAMNSVDFKPSRPFRIISGSDD 169
Query: 185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW-GA 243
           NT+ ++     +   +    T  E    H+  + ++ +N  G    S   D TI ++ G 
Sbjct: 170 NTVAIF-----EGPPFKFKSTFGE----HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220
Query: 244 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQF 293
           D T+     G      L  ++  H  ++F + WS +G  IAS +AD +++ 
Sbjct: 221 DGTKT----GVFEDDSLKNVA--HSGSVFGLTWSPDGTKIASASADKTIKI 265

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL 159
           E ++  + H  EV SVSWN +GT+L++ G D  V +W+    NEF+C SV+
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCXSVI 347

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 112/254 (44%), Gaps = 28/254 (11%)
Query: 116 GHENEVKSVSWNASGTLLATCGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPT 174
           GH++ V  V ++  G  +ATC  D+ + ++++    + +E     + H   +  + W   
Sbjct: 9   GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 175 M--DVLFSCSYDNTIKVWWAEDTDSD-----NWHCVQTISESNNGHSSTIWALSFNAKGD 227
               ++ S SYD T+K+ W ED D +      W+ + T+++S     S  +A +    G 
Sbjct: 69  EYGRIIASASYDKTVKL-WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH--LGL 125
Query: 228 KLVSCSDDLTIKIWGA-DITRMQSGDGYASWRHLCTISGYHDRTIFSVHW-----SREGI 281
           KL    +D  ++++ A + + ++S    +  + L      H ++ F + W     S E +
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185
Query: 282 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR---LLASAS 338
             S  A +    +   KD  +       +  K   H   + S+ W+P   R   L+A+  
Sbjct: 186 AVS--ALEQAIIYQRGKDGKL------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237
Query: 339 DDGMIKIWELANTL 352
            DG I+I+++   L
Sbjct: 238 KDGRIRIFKITEKL 251

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 14/100 (14%)
Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
           L GH + +  V+++   D+LFSCS D++  VW+     S N   + T+    +GH+ TIW
Sbjct: 28  LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWY-----SLNGERLGTL----DGHTGTIW 78
Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWR 258
           ++  +      V+ S D +IK+W      + +G   A+W+
Sbjct: 79  SIDVDCFTKYCVTGSADYSIKLW-----DVSNGQCVATWK 113

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 110/314 (35%), Gaps = 51/314 (16%)
Query: 11  LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWE-QSASSRFWNCKAVL 69
           L+EI  L    D + S  W P    + +       S  +  RI E      ++W    + 
Sbjct: 39  LKEIVKL----DNIVSSTWNPLD--ESILAYGEKNSVARLARIVETDQEGKKYWKLTIIA 92
Query: 70  EEMH-----------TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE 118
           E  H           T  V   AWS  G  + T   +    +W   G     +  L  H 
Sbjct: 93  ELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA---LLNVLNFHR 149
Query: 119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVL 178
             + SV WN  GT + +   +    +W V+ G   +   + +     +   + H     L
Sbjct: 150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN-AENHSGDGSL 208
Query: 179 FSCSYDNTIKVWWAED-----TDSDNWHCVQTISESNN-----GHSSTIWALSFNAKGDK 228
                   + V W +D             V  I+E        GH   I  L FN     
Sbjct: 209 -------GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL 261
Query: 229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAAD 288
           L+S SDD T++IW         G+G +     C     H ++I S  W  +  + S + D
Sbjct: 262 LLSASDDGTLRIW-------HGGNGNS---QNCFYG--HSQSIVSASWVGDDKVISCSMD 309
Query: 289 DSVQFFVESKDDLI 302
            SV+ +   ++ L+
Sbjct: 310 GSVRLWSLKQNTLL 323

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 20/189 (10%)
Query: 13  EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
           +I TL+GH+  V  LAW+     DG+    AS   D  V+IW+  +S          +  
Sbjct: 209 QIGTLQGHSSEVCGLAWRS----DGLQ--LASGGNDNVVQIWDARSS-----IPKFTKTN 257
Query: 73  HTRTVRSCAWSP-SGKLLAT--ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA- 128
           H   V++ AW P    LLAT   + D     W    G    V T++   ++V S+ W+  
Sbjct: 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG--ARVNTVDA-GSQVTSLIWSPH 314
Query: 129 SGTLLATCG-RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI 187
           S  +++T G  D ++ IW        + V +   H   V      P   +L + + D  +
Sbjct: 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI-PAHDTRVLYSALSPDGRILSTAASDENL 373
Query: 188 KVWWAEDTD 196
           K W   D D
Sbjct: 374 KFWRVYDGD 382

>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 6/177 (3%)
Query: 81  AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK 140
           AW+     +A    +    I+E  G  +  V  L+ H  +V  V W      + TCG D+
Sbjct: 15  AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR 74
Query: 141 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW 200
           + ++W  + G  ++   V+    +  + V+W P        S    I + + E  ++D W
Sbjct: 75  NAYVW-TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ-ENDWW 132
Query: 201 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW 257
            C            ST+ +L ++     L + S D   +I+ A I  ++       W
Sbjct: 133 VCKHI----KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 185

>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 6/177 (3%)
Query: 81  AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK 140
           AW+     +A    +    I+E  G  +  V  L+ H  +V  + W      + TCG D+
Sbjct: 15  AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDR 74
Query: 141 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW 200
           + ++W  + G  ++   V+    +  + V+W P        S    I + + E  ++D W
Sbjct: 75  NAYVW-TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ-ENDWW 132
Query: 201 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW 257
            C            ST+ +L ++     L + S D   +I+ A I  ++       W
Sbjct: 133 VCKHI----KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.77
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.77
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.76
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.76
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.72
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.69
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.68
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.67
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.66
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.64
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.63
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.63
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.62
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.61
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.57
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.56
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.53
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.53
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.52
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.49
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.47
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.47
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.46
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.43
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.42
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.4
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.39
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.39
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.38
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.38
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.34
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.33
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.32
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.32
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.29
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.26
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.25
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.23
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.23
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.21
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.2
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.19
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.17
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.14
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.13
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.12
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.1
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.06
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.05
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.03
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.0
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.94
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.79
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.78
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.68
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.6
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.56
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.54
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.45
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.45
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.42
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.36
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.32
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.32
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.3
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.26
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.17
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.16
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.15
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.12
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.07
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.04
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.0
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.0
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.98
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.92
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.92
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.87
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.86
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.85
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.84
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.81
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.8
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.8
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.8
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.78
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.76
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.7
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.66
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.64
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.59
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.58
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.57
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.54
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.53
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.51
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.45
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.42
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.37
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.25
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.23
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.95
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.9
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.75
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.71
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.4
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.13
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.09
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.03
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.67
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.42
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.25
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.21
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.16
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.09
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	94.99
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	94.97
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.8
3v65_B	386	Low-density lipoprotein receptor-related protein;	94.74
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.56
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	94.53
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.28
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.96
3v65_B	386	Low-density lipoprotein receptor-related protein;	93.47
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	93.41
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	93.35
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.11
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.93
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.79
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	92.72
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.6
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.53
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	92.16
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	92.09
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.95
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	91.79
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.37
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.28
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.24
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	90.95
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	90.88
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	90.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	90.66
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	90.59
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	90.4
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	90.34
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	90.25
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	90.15
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	89.94
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	89.76
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	89.65
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	88.89
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	88.69
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	87.76
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	87.56
3kya_A	496	Putative phosphatase; structural genomics, joint c	87.13
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	85.11
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	84.72
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	84.58
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	83.2
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	81.77
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	81.37

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1e-49  Score=353.15  Aligned_cols=326  Identities=48%  Similarity=0.964  Sum_probs=261.3

Q ss_pred             eeeeeeecCCcc-ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE
Q 018675           11 LREIQTLEGHTD-RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL   89 (352)
Q Consensus        11 ~~~~~~~~gH~~-~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l   89 (352)
                      +..+.++.+|.+ .|++++|+|+      +++||||+.|++|+||+..++..  .+.......|...|++++|+|++++|
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~------g~~las~~~D~~i~iw~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~g~~l   76 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPA------GTLLASCGGDRRIRIWGTEGDSW--ICKSVLSEGHQRTVRKVAWSPCGNYL   76 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTT------SSCEEEEETTSCEEEEEEETTEE--EEEEEECSSCSSCEEEEEECTTSSEE
T ss_pred             EEEeeeecCCCCCcEEEEEECCC------CCEEEEEcCCCeEEEEEcCCCcc--eeeeeeccccCCcEEEEEECCCCCEE
Confidence            467889999998 9999999997      57999999999999999876532  12223335689999999999999999


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEE
Q 018675           90 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV  169 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~  169 (352)
                      ++|+.|+++++|+...+...+...+.+|...|.+++|+|++++|++|+.|++|++||+.......++..+.+|...|.++
T Consensus        77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~  156 (345)
T 3fm0_A           77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV  156 (345)
T ss_dssp             EEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred             EEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEE
Confidence            99999999999998777666778889999999999999999999999999999999998766666777888999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccc
Q 018675          170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ  249 (352)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  249 (352)
                      +|+|++.+|++++.|+.|++|+....   .+.+...+    .+|...|++++|+|++++|++|+.|++|++|+.......
T Consensus       157 ~~~p~~~~l~s~s~d~~i~~w~~~~~---~~~~~~~~----~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          157 VWHPSQELLASASYDDTVKLYREEED---DWVCCATL----EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             EECSSSSCEEEEETTSCEEEEEEETT---EEEEEEEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred             EECCCCCEEEEEeCCCcEEEEEecCC---CEEEEEEe----cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence            99999999999999999999986542   12222333    479999999999999999999999999999986432111


Q ss_pred             cC----CCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEE
Q 018675          250 SG----DGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV  324 (352)
Q Consensus       250 ~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  324 (352)
                      ..    .....+.....+.+.|...++.++|++++ .+++++.|+.+++|+.........+..........+|...|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  309 (345)
T 3fm0_A          230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV  309 (345)
T ss_dssp             TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred             ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence            00    01122344455666688899999999865 79999999999999765432211122222223446899999999


Q ss_pred             EecCCCcceEEEecCCCeEEEEeeccC
Q 018675          325 QWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       325 ~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      +|+|++..+|||||.||+|++|++..+
T Consensus       310 ~~~p~~~~~laS~s~Dg~v~~W~~~~~  336 (345)
T 3fm0_A          310 AWNPKEPGLLASCSDDGEVAFWKYQRP  336 (345)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred             EEeCCCceEEEEcCCCCcEEEEEecCC
Confidence            999988668999999999999999754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-46  Score=326.58  Aligned_cols=313  Identities=37%  Similarity=0.762  Sum_probs=238.7

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeec-ceecceEEEEECCCCCEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE-MHTRTVRSCAWSPSGKLL   89 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l   89 (352)
                      +..+.+|++|.+.|++++|+|+        +||||+.|++|++|++..+..  .....+.. .|...|++++|+|++++|
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--------~las~~~D~~i~lw~~~~~~~--~~~~~~~~~~h~~~v~~v~~sp~~~~l   73 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--------ILATGSTDRKIKLVSVKYDDF--TLIDVLDETAHKKAIRSVAWRPHTSLL   73 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--------EEEEEESSSCEEEEECSSSCC--EEEEEECTTCCCSCEEEEEECTTSSEE
T ss_pred             cccceeeccCCCceeeeccCCC--------EEEEEcCCCEEEEEEecCCCe--EEEEEEecCCccCCEEEEEECCCCCEE
Confidence            3567889999999999999984        899999999999999876421  11222322 388999999999999999


Q ss_pred             EEEeCCCcEEEEEccCC-----ceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCC-CCeeEEEEEeecCc
Q 018675           90 ATASFDATTCIWEDVGG-----DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-GNEFECVSVLQGHA  163 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~h~  163 (352)
                      ++|+.|++|++|+....     ...+...+.+|...|++++|+|++++|++|+.|++|++||+.. +...+++..+.+|.
T Consensus        74 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~  153 (330)
T 2hes_X           74 AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS  153 (330)
T ss_dssp             EEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS
T ss_pred             EEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC
Confidence            99999999999987432     2245667889999999999999999999999999999999843 33456677788999


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 018675          164 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--GDKLVSCSDDLTIKIW  241 (352)
Q Consensus       164 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~--~~~l~s~~~dg~i~iw  241 (352)
                      ..|.+++|+|++.+|++++.|+.|++|+....   .+.+...+    .+|...|++++|+|+  +.+|++|+.|++|++|
T Consensus       154 ~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~---~~~~~~~~----~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw  226 (330)
T 2hes_X          154 QDVKHVIWHPSEALLASSSYDDTVRIWKDYDD---DWECVAVL----NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW  226 (330)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEEEETT---EEEEEEEE----CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCeEEEEECCCC---CeeEEEEc----cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence            99999999999999999999999999986432   12333333    479999999999998  7789999999999999


Q ss_pred             cCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCc-c
Q 018675          242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM-D  320 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~  320 (352)
                      +++.....   ....|.....+...|...+++++|++++++++++.|+.+++|+.....      ...+.....+|.. .
T Consensus       227 ~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~------~~~~~~~~~~h~~~~  297 (330)
T 2hes_X          227 KYMGDDED---DQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGE------WKVFAKRALCHGVYE  297 (330)
T ss_dssp             EEEEECTT---SCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTE------EEEEEEESCTTTTSC
T ss_pred             EecCCCcc---ccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCc------eEEEeccccccccce
Confidence            87532110   111222333333447888999999998999999999999999754211      1112223457876 8


Q ss_pred             eeEEEecC--CCcceEEEecCCCeEEEEeecc
Q 018675          321 VNSVQWSP--GERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       321 i~~~~~sp--~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      |++++|+|  ++ .+|+||+.||+|+||++..
T Consensus       298 v~~v~~~~~~~~-~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          298 INVVKWLELNGK-TILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEEEC------CCEEEEETTSEEEEEEC--
T ss_pred             EEEEEEecCCCc-eEEEEecCCCcEEEEEecc
Confidence            99999999  45 4789999999999999865

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.7e-45  Score=319.77  Aligned_cols=306  Identities=25%  Similarity=0.411  Sum_probs=238.3

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      +....+|+||.+.|++++|+|.+     +.+|+|||.|++|++|++................|...|.+++|+|++++|+
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~-----~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~   81 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQ-----PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYAL   81 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSC-----TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEEEccccceEEEEEccCCC-----ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEE
Confidence            56778899999999999999964     3689999999999999986432211111112246899999999999999999


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      +|+.|++|++||..++  ++...+.+|...|.+++|+|++.+|++++.|++|++||+..    .++..+.+|...+.++.
T Consensus        82 s~s~D~~v~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~----~~~~~~~~h~~~v~~~~  155 (319)
T 3frx_A           82 SASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG----QCLATLLGHNDWVSQVR  155 (319)
T ss_dssp             EEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS----CEEEEECCCSSCEEEEE
T ss_pred             EEeCCCEEEEEECCCC--CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeEEEEeccCCcEEEEE
Confidence            9999999999998776  45677889999999999999999999999999999999853    24567788999999999


Q ss_pred             EcCCC------CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          171 WHPTM------DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       171 ~~~~~------~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      ++|..      ..+++++.|+.|++|++...     .....    ..+|...|.+++|+|++++|++|+.||.|++||+.
T Consensus       156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-----~~~~~----~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~  226 (319)
T 3frx_A          156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----QIEAD----FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA  226 (319)
T ss_dssp             ECCC------CCEEEEEETTSCEEEEETTTT-----EEEEE----ECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             EccCCCCCCCccEEEEEeCCCEEEEEECCcc-----hhhee----ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            99853      48999999999999987542     22222    24799999999999999999999999999999975


Q ss_pred             ccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEE
Q 018675          245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV  324 (352)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  324 (352)
                      ..+           ....+.  ....+.+++|+|++.+++++.++.+++|......+..... .........|...+.++
T Consensus       227 ~~~-----------~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~  292 (319)
T 3frx_A          227 AKK-----------AMYTLS--AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSL  292 (319)
T ss_dssp             TTE-----------EEEEEE--CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEEC-CCCTTCCGGGCCCEEEE
T ss_pred             CCc-----------EEEEec--CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccC-ccccccccCcCcceeEE
Confidence            322           222222  2457899999999866666667779999765422211100 00011123567789999


Q ss_pred             EecCCCcceEEEecCCCeEEEEeeccC
Q 018675          325 QWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       325 ~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      +|+|+++ +|++|+.||+|+||++.+.
T Consensus       293 ~~spdg~-~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          293 AWSADGQ-TLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EECTTSS-EEEEEETTSCEEEEEEEEC
T ss_pred             EECCCCC-EEEEeecCceEEEEEEeec
Confidence            9999997 6789999999999999753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-44  Score=318.74  Aligned_cols=293  Identities=24%  Similarity=0.431  Sum_probs=240.2

Q ss_pred             ceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE
Q 018675           10 ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL   89 (352)
Q Consensus        10 ~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l   89 (352)
                      .+....+|+||.+.|++++|+|+      +++|+|||.|++|++|+..+......    + ..|...|.+++|+|++++|
T Consensus        44 ~~~~~~~l~gH~~~v~~~~~s~d------~~~l~s~s~Dg~v~iWd~~~~~~~~~----~-~~~~~~v~~~~~s~~~~~l  112 (340)
T 1got_B           44 QMRTRRTLRGHLAKIYAMHWGTD------SRLLLSASQDGKLIIWDSYTTNKVHA----I-PLRSSWVMTCAYAPSGNYV  112 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTT------SSEEEEEETTTEEEEEETTTCCEEEE----E-ECSSSCEEEEEECTTSSEE
T ss_pred             cchhheeecCCCCceEEEEECCC------CCEEEEEeCCCcEEEEECCCCCcceE----e-ecCCccEEEEEECCCCCEE
Confidence            45667889999999999999997      57999999999999999887654322    1 3478899999999999999


Q ss_pred             EEEeCCCcEEEEEccCCc--eeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCee
Q 018675           90 ATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK  167 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~  167 (352)
                      ++|+.|+.+++|+..+.+  ......+.+|.+.|.++.|++++. +++++.|++|++||+..+   .++..+.+|...|.
T Consensus       113 ~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~---~~~~~~~~h~~~v~  188 (340)
T 1got_B          113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG---QQTTTFTGHTGDVM  188 (340)
T ss_dssp             EEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT---EEEEEECCCSSCEE
T ss_pred             EEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC---cEEEEEcCCCCceE
Confidence            999999999999976542  234556789999999999998765 889999999999998755   34567889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccc
Q 018675          168 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR  247 (352)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  247 (352)
                      +++|+|++.++++|+.|+.|++|++...     .+...+    .+|...|.+++|+|++.+|++|+.||+|++||++...
T Consensus       189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~-----~~~~~~----~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~  259 (340)
T 1got_B          189 SLSLAPDTRLFVSGACDASAKLWDVREG-----MCRQTF----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ  259 (340)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTC-----SEEEEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCC-----eeEEEE----cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Confidence            9999999999999999999999987643     223333    3788999999999999999999999999999986322


Q ss_pred             cccCCCCccceeeEEee-cccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEE
Q 018675          248 MQSGDGYASWRHLCTIS-GYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ  325 (352)
Q Consensus       248 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  325 (352)
                      .           ...+. ..+...+.+++|+|++ ++++++.|+.+++|+....         .......+|...|++++
T Consensus       260 ~-----------~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---------~~~~~~~~h~~~v~~~~  319 (340)
T 1got_B          260 E-----------LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLG  319 (340)
T ss_dssp             E-----------EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEE
T ss_pred             E-----------EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---------cEeeEeecCCCcEEEEE
Confidence            1           11111 1123468899999976 8999999999999976432         12344578999999999


Q ss_pred             ecCCCcceEEEecCCCeEEEEe
Q 018675          326 WSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       326 ~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      |+|+++ +|+|||.||+|+||+
T Consensus       320 ~s~dg~-~l~s~s~D~~i~iWd  340 (340)
T 1got_B          320 VTDDGM-AVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSS-CEEEEETTSCEEEEC
T ss_pred             EcCCCC-EEEEEcCCccEEecC
Confidence            999986 688999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1e-44  Score=328.56  Aligned_cols=289  Identities=31%  Similarity=0.519  Sum_probs=241.3

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      ...+.||.+.|++++|+|+      +++|+||+.|++|++||..++...    ..+ ..|...|++++|+|++++|++|+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~------~~~l~s~s~Dg~i~vwd~~~~~~~----~~l-~~h~~~V~~v~~~~~~~~l~sgs  169 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPV------FSVMVSASEDATIKVWDYETGDFE----RTL-KGHTDSVQDISFDHSGKLLASCS  169 (410)
T ss_dssp             SCEEECCSSCEEEEEECSS------SSEEEEEESSSCEEEEETTTCCCC----EEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEeecccCCcEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCcEE----EEE-eccCCcEEEEEEcCCCCEEEEEe
Confidence            4567899999999999997      479999999999999999876432    222 45889999999999999999999


Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                      .|++|++||..+.  .++..+.+|...|.+++|+|++++|++|+.|++|++||+..+.   ++..+.+|...+.++.++|
T Consensus       170 ~D~~i~iwd~~~~--~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~---~~~~~~~h~~~v~~~~~~~  244 (410)
T 1vyh_C          170 ADMTIKLWDFQGF--ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY---CVKTFTGHREWVRMVRPNQ  244 (410)
T ss_dssp             TTSCCCEEETTSS--CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECT
T ss_pred             CCCeEEEEeCCCC--ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---EEEEEeCCCccEEEEEECC
Confidence            9999999998765  4567788999999999999999999999999999999997654   4667889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC--------------------CCEEEEEe
Q 018675          174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK--------------------GDKLVSCS  233 (352)
Q Consensus       174 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~--------------------~~~l~s~~  233 (352)
                      ++.++++++.|+.|++|++....     +...+    .+|...|.+++|+|+                    +.+|++|+
T Consensus       245 ~g~~l~s~s~D~~v~vwd~~~~~-----~~~~~----~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs  315 (410)
T 1vyh_C          245 DGTLIASCSNDQTVRVWVVATKE-----CKAEL----REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  315 (410)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCC-----EEEEE----CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCc-----eeeEe----cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence            99999999999999999875432     22333    368899999999996                    67899999


Q ss_pred             CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeee
Q 018675          234 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLK  312 (352)
Q Consensus       234 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~  312 (352)
                      .|+.|++||++...           ....+. .|...+.++.+++++ ++++++.|+.+++|+....         ..+.
T Consensus       316 ~D~~i~iwd~~~~~-----------~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---------~~~~  374 (410)
T 1vyh_C          316 RDKTIKMWDVSTGM-----------CLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---------RCMK  374 (410)
T ss_dssp             TTSEEEEEETTTTE-----------EEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---------CCCE
T ss_pred             CCCeEEEEECCCCc-----------eEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------ceEE
Confidence            99999999975321           222332 367789999999876 7999999999999965432         2234


Q ss_pred             cccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          313 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       313 ~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ...+|...|++++|+|++. +|+||+.||+|+||+++
T Consensus       375 ~~~~h~~~v~~l~~~~~~~-~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          375 TLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEECCSSCEEEEEECSSSS-CEEEEETTSEEEEEC--
T ss_pred             EEcCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Confidence            4568999999999999986 68899999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.6e-44  Score=314.29  Aligned_cols=298  Identities=21%  Similarity=0.291  Sum_probs=241.3

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      ......+++|.+.|++++|+|+..  ..+.+|+|||.|++|++|++......  .... ...|...|.+++|+|++++++
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~--~~~~~l~tgs~D~~v~vW~~~~~~~~--~~~~-l~gh~~~v~~~~~~~~~~~l~   96 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKK--ENSETVVTGSLDDLVKVWKWRDERLD--LQWS-LEGHQLGVVSVDISHTLPIAA   96 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC---------CEEEEEETTSCEEEEEEETTEEE--EEEE-ECCCSSCEEEEEECSSSSEEE
T ss_pred             hheeeecccCCCcEEEEEEecCCC--CCCCEEEEEcCCCCEEEEECCCCCee--eeee-eccCCCCEEEEEECCCCCEEE
Confidence            355677889999999999998521  12468999999999999998765321  1111 246889999999999999999


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      +++.|++|++||..+++  ++..+..|...+.+++|+|++++|++++.|+++++|++..+..   ...+..|...+.+++
T Consensus        97 s~s~D~~i~lWd~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~---~~~~~~~~~~v~~~~  171 (321)
T 3ow8_A           97 SSSLDAHIRLWDLENGK--QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK---EYSLDTRGKFILSIA  171 (321)
T ss_dssp             EEETTSEEEEEETTTTE--EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE---EEEEECSSSCEEEEE
T ss_pred             EEeCCCcEEEEECCCCC--EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce---eEEecCCCceEEEEE
Confidence            99999999999987763  4566778888999999999999999999999999999976643   445667888899999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          171 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      |+|++++|++++.|+.|++|++...     .....+    .+|..+|.+++|+|++++|++++.|+.|++||++...   
T Consensus       172 ~spdg~~lasg~~dg~i~iwd~~~~-----~~~~~~----~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~---  239 (321)
T 3ow8_A          172 YSPDGKYLASGAIDGIINIFDIATG-----KLLHTL----EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN---  239 (321)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTT-----EEEEEE----CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC---
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCC-----cEEEEE----cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc---
Confidence            9999999999999999999987543     233333    3788999999999999999999999999999975321   


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCC
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG  329 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~  329 (352)
                              ....+ ..|...+.+++|+|++ ++++++.|+++++|+....         ..+....+|...|++++|+|+
T Consensus       240 --------~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~h~~~v~~v~~s~~  301 (321)
T 3ow8_A          240 --------LAGTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR---------TCVHTFFDHQDQVWGVKYNGN  301 (321)
T ss_dssp             --------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTT
T ss_pred             --------eeEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---------EEEEEEcCCCCcEEEEEECCC
Confidence                    12222 2467789999999976 8999999999999976432         234456789999999999999


Q ss_pred             CcceEEEecCCCeEEEEeec
Q 018675          330 ERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       330 ~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ++ .|+|++.||+|+|||+.
T Consensus       302 g~-~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          302 GS-KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             SS-EEEEEETTCCEEEEECC
T ss_pred             CC-EEEEEeCCCeEEEEeCC
Confidence            86 57899999999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.2e-43  Score=315.22  Aligned_cols=295  Identities=23%  Similarity=0.379  Sum_probs=238.1

Q ss_pred             cceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCE
Q 018675            9 YELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKL   88 (352)
Q Consensus         9 ~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~   88 (352)
                      +......+|+||.+.|++++|+|+      +++|+|||.|++|++|+..+.....    .+ ..|...|.+++|+|+|..
T Consensus        52 ~~~~~~~~l~gH~~~V~~~~~s~d------~~~l~s~s~Dg~v~vWd~~~~~~~~----~~-~~~~~~v~~~~~sp~g~~  120 (354)
T 2pbi_B           52 FVMKTRRTLKGHGNKVLCMDWCKD------KRRIVSSSQDGKVIVWDSFTTNKEH----AV-TMPCTWVMACAYAPSGCA  120 (354)
T ss_dssp             CCCCEEEEEECCSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCCEEE----EE-ECSSSCCCEEEECTTSSE
T ss_pred             cccEEEEEecCCCCeEEEEEECCC------CCEEEEEeCCCeEEEEECCCCCcce----EE-ecCCCCEEEEEECCCCCE
Confidence            345667889999999999999997      5799999999999999987764322    11 346778999999999999


Q ss_pred             EEEEeCCCcEEEEEccCCc----eeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCcc
Q 018675           89 LATASFDATTCIWEDVGGD----YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ  164 (352)
Q Consensus        89 l~s~~~d~~i~i~~~~~~~----~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~  164 (352)
                      +++|+.|+.+++|+.....    ......+.+|.+.|.+++|+|++..|++++.|++|++||+..+.   ++..+.+|..
T Consensus       121 lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~---~~~~~~~h~~  197 (354)
T 2pbi_B          121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ---LLQSFHGHGA  197 (354)
T ss_dssp             EEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---EEEEEECCSS
T ss_pred             EEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEcCCCC
Confidence            9999999999999864321    12344567899999999999999999999999999999997654   4567889999


Q ss_pred             CeeEEEEcCC--CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEc
Q 018675          165 DVKMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG  242 (352)
Q Consensus       165 ~v~~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd  242 (352)
                      .+.+++++|+  +..|++|+.|+.|++||+...     .+...+    .+|...|.+++|+|++.+|++|+.|++|++||
T Consensus       198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~-----~~~~~~----~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd  268 (354)
T 2pbi_B          198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-----QCVQAF----ETHESDVNSVRYYPSGDAFASGSDDATCRLYD  268 (354)
T ss_dssp             CEEEEEECCCSSCCEEEEEETTSCEEEEETTTC-----CEEEEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----cEEEEe----cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            9999999874  679999999999999987653     233333    36889999999999999999999999999999


Q ss_pred             CCccccccCCCCccceeeEEeec-ccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcc
Q 018675          243 ADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD  320 (352)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  320 (352)
                      ++..+.           ...+.. .+...+.++.|++++ ++++++.|+.+++|+....         ..+....+|...
T Consensus       269 ~~~~~~-----------~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---------~~~~~l~~h~~~  328 (354)
T 2pbi_B          269 LRADRE-----------VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---------SRVSILFGHENR  328 (354)
T ss_dssp             TTTTEE-----------EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---------SEEEEECCCSSC
T ss_pred             CCCCcE-----------EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---------ceEEEEECCCCc
Confidence            864221           111111 123357788999876 7889999999999976432         123345689999


Q ss_pred             eeEEEecCCCcceEEEecCCCeEEEEe
Q 018675          321 VNSVQWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       321 i~~~~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      |++++|+|+++ +|+||+.||+|+||+
T Consensus       329 v~~l~~spdg~-~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          329 VSTLRVSPDGT-AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEEECTTSS-CEEEEETTSEEEEEC
T ss_pred             EEEEEECCCCC-EEEEEcCCCCEEecC
Confidence            99999999986 688999999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.2e-43  Score=312.65  Aligned_cols=309  Identities=20%  Similarity=0.369  Sum_probs=239.7

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      +....+|+||.+.|++|+|+|+.     +++|+|||.|++|+||++.+..............|...|.+++|+|++++|+
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~-----~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~  102 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQF-----PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL  102 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTC-----TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             eEEEEEECCccCCEEEEEEeCCC-----CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEE
Confidence            45556899999999999999974     4799999999999999987654322222222256889999999999999999


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      +|+.|+.+++|+.....  .......+...+..+.+++++.+|++++.|+.+++||+....  .......+|...+..++
T Consensus       103 s~~~d~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~--~~~~~~~~~~~~v~~~~  178 (340)
T 4aow_A          103 SGSWDGTLRLWDLTTGT--TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC--KYTVQDESHSEWVSCVR  178 (340)
T ss_dssp             EEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--EEEECSSSCSSCEEEEE
T ss_pred             EEcccccceEEeecccc--eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc--eEEEEeccccCcccceE
Confidence            99999999999977653  344455677888999999999999999999999999986432  33445667889999999


Q ss_pred             EcCCC--CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccc
Q 018675          171 WHPTM--DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM  248 (352)
Q Consensus       171 ~~~~~--~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~  248 (352)
                      |+++.  .++++++.|+.|++|+....     .....+    .+|...|.+++|+|++++|++|+.||.|++||++..+ 
T Consensus       179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~-----~~~~~~----~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~-  248 (340)
T 4aow_A          179 FSPNSSNPIIVSCGWDKLVKVWNLANC-----KLKTNH----IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-  248 (340)
T ss_dssp             ECSCSSSCEEEEEETTSCEEEEETTTT-----EEEEEE----CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-
T ss_pred             EccCCCCcEEEEEcCCCEEEEEECCCC-----ceeeEe----cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc-
Confidence            98764  57889999999999987543     223322    3788999999999999999999999999999976322 


Q ss_pred             ccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecC
Q 018675          249 QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP  328 (352)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  328 (352)
                                ....+.  +...+..+.+++++.+++++.|+.+++|+....................+|...|++++|+|
T Consensus       249 ----------~~~~~~--~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  316 (340)
T 4aow_A          249 ----------HLYTLD--GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA  316 (340)
T ss_dssp             ----------EEEEEE--CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT
T ss_pred             ----------eeeeec--CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC
Confidence                      222222  34568899999999999999999999998765433222122222234467999999999999


Q ss_pred             CCcceEEEecCCCeEEEEeeccC
Q 018675          329 GERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       329 ~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      +++ +|+||+.||.|+||+++++
T Consensus       317 dg~-~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          317 DGQ-TLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             TSS-EEEEEETTSCEEEEEEEC-
T ss_pred             CCC-EEEEEeCCCEEEEEeCCCc
Confidence            986 6889999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.3e-43  Score=312.14  Aligned_cols=313  Identities=21%  Similarity=0.284  Sum_probs=234.6

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCcee---eeeeeeeecceecceEEEEECCCCC
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRF---WNCKAVLEEMHTRTVRSCAWSPSGK   87 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~---~~~~~~~~~~h~~~v~~~~~s~~~~   87 (352)
                      .....+|+||.+.|++++|.+.......+++|+|||.|++|++|++......   ..+.. ....|...|.+++|+|+++
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~-~l~~h~~~V~~~~~~~~~~   89 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHK-ALTGHNHFVSDLALSQENC   89 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEE-EECCCSSCEEEEEECSSTT
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccc-hhccCCCceEEEEECCCCC
Confidence            4566789999999999999321100012579999999999999998654211   11112 2246889999999999999


Q ss_pred             EEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCee
Q 018675           88 LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK  167 (352)
Q Consensus        88 ~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~  167 (352)
                      ++++|+.|++|++||..+++  +...+.+|...|.+++|+|++++|++++.|++|++||+... .........+|...+.
T Consensus        90 ~l~s~s~D~~v~lwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTGT--TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS  166 (343)
T ss_dssp             EEEEEETTSEEEEEETTSSC--EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred             EEEEEcCCCcEEEEECCCCc--EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence            99999999999999987764  46678899999999999999999999999999999998632 1111111236888899


Q ss_pred             EEEEcCCC----------CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCc
Q 018675          168 MVQWHPTM----------DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT  237 (352)
Q Consensus       168 ~~~~~~~~----------~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~  237 (352)
                      +++|+|++          .++++++.|+.|++|+...      .....+    .+|...|.+++|+|++++|++|+.||.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~----~~h~~~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRYTF----KAHESNVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEEEE----ECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeEEE----cCccccceEEEECCCCCEEEEEcCCCe
Confidence            99999986          7899999999999998321      222222    368899999999999999999999999


Q ss_pred             EEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCcccc--Ccc--cceeeec
Q 018675          238 IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLID--GPS--YKMLLKK  313 (352)
Q Consensus       238 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~--~~~--~~~~~~~  313 (352)
                      |++||+.....          ....+.  +...+.+++|+|++.+++++.|+.+++|+........  ...  .......
T Consensus       237 v~iwd~~~~~~----------~~~~~~--~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~  304 (343)
T 2xzm_R          237 LLIWDILNLTY----------PQREFD--AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEG  304 (343)
T ss_dssp             EEEEESSCCSS----------CSEEEE--CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTT
T ss_pred             EEEEECCCCcc----------cceeec--CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhh
Confidence            99999732110          011111  3446899999999877778889999999765432211  000  0000112


Q ss_pred             ccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       314 ~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ..+|...|++++|+|+++ +|++|+.||+|++|++.+
T Consensus       305 ~~~~~~~v~~~~~sp~g~-~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          305 QKGKNPQCTSLAWNALGK-KLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             BCCSCCCEEEEEECSSSC-CEEEEETTSEEEEEEEEE
T ss_pred             hcCCCCceEEEEECCCCC-eEEEecCCceEEEEEEEc
Confidence            247888999999999986 578999999999999875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.7e-43  Score=306.48  Aligned_cols=295  Identities=20%  Similarity=0.306  Sum_probs=237.6

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      +....+|++|.+.|++++|+|+      +++|+|++.|++|++|+..++.....    + ..|..+|.+++|+|++++|+
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~------~~~l~s~~~dg~v~lWd~~~~~~~~~----~-~~~~~~v~~~~~~~~~~~l~   71 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPT------EPWVLTTLYSGRVELWNYETQVEVRS----I-QVTETPVRAGKFIARKNWII   71 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSS------SSEEEEEETTSEEEEEETTTTEEEEE----E-ECCSSCEEEEEEEGGGTEEE
T ss_pred             ceeEEeecCCCCceEEEEECCC------CCEEEEEcCCCcEEEEECCCCceeEE----e-eccCCcEEEEEEeCCCCEEE
Confidence            4556789999999999999997      57999999999999999987643221    2 34778999999999999999


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      +|+.|++|++||..+++  ++..+.+|.+.|++++|+|++.+|++|+.|++|++||+..+.  .....+.+|...|.+++
T Consensus        72 s~s~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--~~~~~~~~h~~~v~~v~  147 (304)
T 2ynn_A           72 VGSDDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--ALEQTFEGHEHFVMCVA  147 (304)
T ss_dssp             EEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT--EEEEEECCCCSCEEEEE
T ss_pred             EECCCCEEEEEECCCCc--EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc--chhhhhcccCCcEEEEE
Confidence            99999999999987764  466788999999999999999999999999999999987553  33456789999999999


Q ss_pred             EcC-CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcC--CCCEEEEEeCCCcEEEEcCCccc
Q 018675          171 WHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA--KGDKLVSCSDDLTIKIWGADITR  247 (352)
Q Consensus       171 ~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~  247 (352)
                      |+| ++..|++|+.|+.|++|++.....     ...+   ..+|...+..++|+|  ++.+|++|+.|++|++||++..+
T Consensus       148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~-----~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~  219 (304)
T 2ynn_A          148 FNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTL---TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS  219 (304)
T ss_dssp             ECTTCTTEEEEEETTSEEEEEETTCSSC-----SEEE---ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred             ECCCCCCEEEEEeCCCeEEEEECCCCCc-----ccee---ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc
Confidence            999 578999999999999999764321     1111   125667899999987  67899999999999999975321


Q ss_pred             cccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEe
Q 018675          248 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW  326 (352)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  326 (352)
                                 ....+. .|...+..+.|+|++ ++++++.|+++++|+....         .+......|...+.+++|
T Consensus       220 -----------~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~---------~~~~~~~~~~~~~~~~~~  278 (304)
T 2ynn_A          220 -----------CVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---------KVEKTLNVGLERSWCIAT  278 (304)
T ss_dssp             -----------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---------CEEEEECCSSSSEEEEEE
T ss_pred             -----------cceeeC-CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC---------ceeeeccCCCccEEEEEE
Confidence                       222333 467789999999976 8999999999999976532         233455678889999999


Q ss_pred             cCCCcc-eEEEecCCCeEEEEeecc
Q 018675          327 SPGERR-LLASASDDGMIKIWELAN  350 (352)
Q Consensus       327 sp~~~~-~l~s~~~Dg~i~iw~~~~  350 (352)
                      +|++.. ++++|+ |..+.+|++.+
T Consensus       279 ~~~~~~~~~asg~-~~g~~~~~~~~  302 (304)
T 2ynn_A          279 HPTGRKNYIASGF-DNGFTVLSLGN  302 (304)
T ss_dssp             CTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred             CCCCCceEEEEec-CCceEEEEecc
Confidence            998765 466666 55577888764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.6e-44  Score=323.95  Aligned_cols=310  Identities=23%  Similarity=0.382  Sum_probs=236.9

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      .....+|+||.+.|++++|+|+      +++|+|||.|++|++||..++....    .+ ..|...|.+++|+|+|++|+
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~------~~~l~s~s~D~~v~iWd~~~~~~~~----~~-~~h~~~v~~~~~s~~g~~la  124 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPE------KNWIVSASQDGRLIVWNALTSQKTH----AI-KLHCPWVMECAFAPNGQSVA  124 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTT------SSCEEEEETTSEEEEEETTTTEEEE----EE-ECCCTTCCCCEECTTSSEEE
T ss_pred             eEEeecccccccEEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCccce----EE-ecCCCCEEEEEECCCCCEEE
Confidence            4567789999999999999997      4789999999999999998765322    22 35888999999999999999


Q ss_pred             EEeCCCcEEEEEccCC-----ceeeeEeeccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEEE--EeecC
Q 018675           91 TASFDATTCIWEDVGG-----DYECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVS--VLQGH  162 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~h  162 (352)
                      +|+.|+.+++|+....     .......+.+|.+.|.++.|.|++ ..|++|+.|++|++||+..+.......  ...+|
T Consensus       125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h  204 (380)
T 3iz6_a          125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH  204 (380)
T ss_dssp             ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC
T ss_pred             EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC
Confidence            9999999999997532     122344577999999999999964 579999999999999997765322211  11578


Q ss_pred             ccCeeEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          163 AQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       163 ~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iw  241 (352)
                      ...+.++.|+| ++.++++|+.|+.|++||+.....    ....+    .+|...|++++|+|++.+|++|+.||+|++|
T Consensus       205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~----~~~~~----~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lw  276 (380)
T 3iz6_a          205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR----AVRTY----HGHEGDINSVKFFPDGQRFGTGSDDGTCRLF  276 (380)
T ss_dssp             CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC----CCEEE----CCCSSCCCEEEECTTSSEEEEECSSSCEEEE
T ss_pred             ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc----ceEEE----CCcCCCeEEEEEecCCCeEEEEcCCCeEEEE
Confidence            88999999987 788999999999999999764321    12222    3799999999999999999999999999999


Q ss_pred             cCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcc
Q 018675          242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD  320 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  320 (352)
                      |++.......     +.........+...+.+++|++++ ++++|+.|+.+++|+......     ...+.....+|...
T Consensus       277 d~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~-----~~~~~~~~~~h~~~  346 (380)
T 3iz6_a          277 DMRTGHQLQV-----YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM-----VLNLGTLQNSHEGR  346 (380)
T ss_dssp             ETTTTEEEEE-----ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE-----EEEECCSCSSCCCC
T ss_pred             ECCCCcEEEE-----ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce-----EEEEecccCCCCCc
Confidence            9864321100     000000000122347789999876 789999999999997643221     11111223689999


Q ss_pred             eeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          321 VNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       321 i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      |++++|+|+++ +|+|||.||+|+||++..
T Consensus       347 v~~l~~s~dg~-~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          347 ISCLGLSSDGS-ALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             CCEEEECSSSS-EEEEECTTSCEEEEECCS
T ss_pred             eEEEEECCCCC-EEEEeeCCCCEEEEecCC
Confidence            99999999986 688999999999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.3e-42  Score=305.40  Aligned_cols=294  Identities=19%  Similarity=0.226  Sum_probs=224.6

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCC-----Ccee-eeeeeeeecceecceEEEEECCCCCEEE
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSA-----SSRF-WNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~-----~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      ..+|...|.+++|+|+      +.+|++++ |+++|+|+...     .... ..........|...|++++|+|++ .|+
T Consensus        26 ~~~~~~~v~~~~fs~d------G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~   97 (344)
T 4gqb_B           26 PACMERQLEAARYRSD------GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GIL   97 (344)
T ss_dssp             CSSCCSEEEEEEECTT------SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEE
T ss_pred             cccccCCEEEEEECCC------CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEE
Confidence            3468888999999997      57888877 77888886321     0000 000001112356789999999985 678


Q ss_pred             EEeCCCcEEEEEccCCceee--eEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeE
Q 018675           91 TASFDATTCIWEDVGGDYEC--VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM  168 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~  168 (352)
                      +|+.||+|++||..+++...  .....+|.+.|++++|+|++++|++|+.|++|++||+..+   +++..+.+|...|.+
T Consensus        98 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~---~~~~~~~~h~~~V~~  174 (344)
T 4gqb_B           98 VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ---VVLSSYRAHAAQVTC  174 (344)
T ss_dssp             EEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEE
T ss_pred             EEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCcCCceEE
Confidence            99999999999987765322  2345689999999999999999999999999999998755   456778899999999


Q ss_pred             EEEcCCCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEcCCcc
Q 018675          169 VQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       169 ~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      ++|+|++. ++++++.|+.|++||+....     ....+.  ...|...+.+++|+|+ +.+|++|+.||+|++||++..
T Consensus       175 ~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----~~~~~~--~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~  247 (344)
T 4gqb_B          175 VAASPHKDSVFLSCSEDNRILLWDTRCPK-----PASQIG--CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST  247 (344)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTSSS-----CEEECC------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred             EEecCCCCCceeeeccccccccccccccc-----eeeeee--cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC
Confidence            99999874 78999999999999876542     122221  1245667999999995 568899999999999998632


Q ss_pred             ccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEE
Q 018675          247 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV  324 (352)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  324 (352)
                      +           ....+. .|...|.+++|+|++  ++++++.|++|++|+....         ++ ....+|...|+++
T Consensus       248 ~-----------~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---------~~-~~~~~H~~~V~~v  305 (344)
T 4gqb_B          248 S-----------CVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---------EL-FRSQAHRDFVRDA  305 (344)
T ss_dssp             ------------CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---------EE-EEECCCSSCEEEE
T ss_pred             c-----------EEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---------cE-EEEcCCCCCEEEE
Confidence            2           122232 477889999999875  6899999999999965432         12 2356899999999


Q ss_pred             EecCCCcceEEEecCCCeEEEEeecc
Q 018675          325 QWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       325 ~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +|+|+++.+|+|+|.||+|++|++..
T Consensus       306 ~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          306 TWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             EEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            99999988899999999999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.2e-41  Score=293.53  Aligned_cols=293  Identities=29%  Similarity=0.497  Sum_probs=233.9

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ....++.||.+.|++++|+|+      +++|++++.|+.+++|+..++...    ..+ ..|...|.+++|+|++++|++
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~------~~~l~s~~~dg~i~iw~~~~~~~~----~~~-~~h~~~v~~~~~~~~~~~l~s   82 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPN------GEWLASSSADKLIKIWGAYDGKFE----KTI-SGHKLGISDVAWSSDSNLLVS   82 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTCCEE----EEE-CCCSSCEEEEEECTTSSEEEE
T ss_pred             eeEEEEcccCCcEEEEEECCC------CCEEEEeeCCCeEEEEeCCCcccc----hhh-ccCCCceEEEEEcCCCCEEEE
Confidence            556788999999999999997      579999999999999998766432    122 458889999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      |+.|+.+++||..+++  ++..+.+|...|.++.|+|++++|++++.|++|++||+..+.   ++..+..|...+.++.|
T Consensus        83 ~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~  157 (312)
T 4ery_A           83 ASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK---CLKTLPAHSDPVSAVHF  157 (312)
T ss_dssp             EETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEE
T ss_pred             ECCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE---EEEEecCCCCcEEEEEE
Confidence            9999999999987663  466788999999999999999999999999999999997654   45667789999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG  251 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (352)
                      +|++.++++++.|+.|++|++....     ....+   ...+...+..++|+|++++|++++.||.|++||++..+.   
T Consensus       158 ~~~~~~l~~~~~d~~i~~wd~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---  226 (312)
T 4ery_A          158 NRDGSLIVSSSYDGLCRIWDTASGQ-----CLKTL---IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC---  226 (312)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCC-----EEEEE---CCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE---
T ss_pred             cCCCCEEEEEeCCCcEEEEECCCCc-----eeeEE---eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE---
Confidence            9999999999999999999876432     22222   224567899999999999999999999999999864321   


Q ss_pred             CCCccceeeEEeecccC--cceE-EEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecC
Q 018675          252 DGYASWRHLCTISGYHD--RTIF-SVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP  328 (352)
Q Consensus       252 ~~~~~~~~~~~~~~~~~--~~i~-~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  328 (352)
                              ...+.....  ..+. ......+.++++++.|+.+++|+....         .++....+|...|.+++|+|
T Consensus       227 --------~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~p  289 (312)
T 4ery_A          227 --------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---------EIVQKLQGHTDVVISTACHP  289 (312)
T ss_dssp             --------EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECS
T ss_pred             --------EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---------hhhhhhhccCCcEEEEeecC
Confidence                    111111111  1111 222233558999999999999976432         23455678999999999999


Q ss_pred             CCcceEEEec--CCCeEEEEeec
Q 018675          329 GERRLLASAS--DDGMIKIWELA  349 (352)
Q Consensus       329 ~~~~~l~s~~--~Dg~i~iw~~~  349 (352)
                      ++. ++++++  .|++|++|+..
T Consensus       290 ~~~-~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          290 TEN-IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSS-EEEEEECTTTCCEEEEECC
T ss_pred             cCC-ceEEEEccCCccEEEecCC
Confidence            986 677776  69999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2e-41  Score=322.10  Aligned_cols=305  Identities=23%  Similarity=0.334  Sum_probs=233.8

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      +.++.+|.+.|++++|+|+.     ...|+||+.|++|++|+..+.+.    ...+ ..|...|++++|+|+|++|++|+
T Consensus       140 ~~~l~gh~~~v~~v~f~p~~-----~~~l~s~s~D~~v~lwd~~~~~~----~~~l-~~H~~~V~~v~fspdg~~las~s  209 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDFKPSR-----PFRIISGSDDNTVAIFEGPPFKF----KSTF-GEHTKFVHSVRYNPDGSLFASTG  209 (611)
T ss_dssp             CBCCCCCSSCEEEEEECSSS-----SCEEEEEETTSCEEEEETTTBEE----EEEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cceecCCCCCceEEEECCCC-----CeEEEEEeCCCeEEEEECCCCeE----eeee-ccccCceEEEEECCCCCEEEEEE
Confidence            35678999999999999973     23699999999999999765432    2222 45899999999999999999999


Q ss_pred             CCCcEEEEEccCCceeeeEeec-------cccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE------------
Q 018675           94 FDATTCIWEDVGGDYECVATLE-------GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE------------  154 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~------------  154 (352)
                      .|++|++|+..+++  +...+.       +|.+.|.+++|+|++++|++++.|++|++||+..+....            
T Consensus       210 ~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~  287 (611)
T 1nr0_A          210 GDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ  287 (611)
T ss_dssp             TTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred             CCCcEEEEECCCCc--EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCcccee
Confidence            99999999987664  334442       799999999999999999999999999999986543211            


Q ss_pred             ----------------------------EEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCC-------
Q 018675          155 ----------------------------CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN-------  199 (352)
Q Consensus       155 ----------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-------  199 (352)
                                                  +...+.+|...|++++|+|++++|++++.|+.|++|++.......       
T Consensus       288 ~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~  367 (611)
T 1nr0_A          288 LGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA  367 (611)
T ss_dssp             EEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS
T ss_pred             EEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCc
Confidence                                        223456899999999999999999999999999999975421000       


Q ss_pred             --ceeE-----------------e-----------------e-------eeccCC-----------------------CC
Q 018675          200 --WHCV-----------------Q-----------------T-------ISESNN-----------------------GH  213 (352)
Q Consensus       200 --~~~~-----------------~-----------------~-------~~~~~~-----------------------~h  213 (352)
                        ...+                 .                 .       +....+                       .|
T Consensus       368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~  447 (611)
T 1nr0_A          368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI  447 (611)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred             ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence              0000                 0                 0       000000                       13


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEE
Q 018675          214 SSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQ  292 (352)
Q Consensus       214 ~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~  292 (352)
                      ...+.+++|+|+|++|++|+.|++|++|+++....         .....  ..|...+.+++|+|++ ++++++.|++++
T Consensus       448 ~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~---------~~~~~--~~h~~~v~~v~fspdg~~las~s~d~~v~  516 (611)
T 1nr0_A          448 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV---------SEVKT--IVHPAEITSVAFSNNGAFLVATDQSRKVI  516 (611)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE---------EEEEE--EECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce---------eeeec--cCCCCceEEEEECCCCCEEEEEcCCCCEE
Confidence            45688999999999999999999999998742211         11111  2477889999999986 899999999999


Q ss_pred             EEEccCCccccCcccceeee--cccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          293 FFVESKDDLIDGPSYKMLLK--KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +|+.....        .+..  ...+|...|++++|+|+++ +|+|++.|++|+||++..
T Consensus       517 ~w~~~~~~--------~~~~~~~~~~H~~~V~~v~fspdg~-~lasgs~D~~v~lW~~~~  567 (611)
T 1nr0_A          517 PYSVANNF--------ELAHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNK  567 (611)
T ss_dssp             EEEGGGTT--------EESCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTC
T ss_pred             EEEcCCCC--------ceeeeeeeeecccceeEEEECCCCC-EEEEEECCCcEEEEECCC
Confidence            99764310        1111  1335999999999999986 689999999999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.8e-42  Score=303.55  Aligned_cols=295  Identities=16%  Similarity=0.238  Sum_probs=220.5

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeC------CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSG------DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL   89 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~------D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l   89 (352)
                      ...+|...|++++|+|+      +.+|||||.      |+++++|+..++....... .....|...|++++|+|++++ 
T Consensus        37 ~p~~H~~~V~~v~fSpD------G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~-~~~~~~~~~V~~~~~s~d~~~-  108 (357)
T 4g56_B           37 APACMEVQIGAVRYRRD------GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLC-TAGVQTEAGVTDVAWVSEKGI-  108 (357)
T ss_dssp             ---CCCSEEEEEEECSS------SCEEEEEECSSSSSCCEEEEEESSCC---CGGGC-SEEEECSSCEEEEEEETTTEE-
T ss_pred             CcccccCCEEEEEECCC------CCEEEEEcCCCCccccCeEEEEECCCCCcceeEe-cccCCCCCCEEEEEEcCCCCE-
Confidence            44679999999999997      689999997      7889999876543211111 111347788999999999865 


Q ss_pred             EEEeCCCcEEEEEccCCceee--eEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCee
Q 018675           90 ATASFDATTCIWEDVGGDYEC--VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK  167 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~  167 (352)
                      ++++.|++|++||..+++...  .....+|.+.|++++|+|++++|++|+.|++|++||+..+   .++..+.+|...|.
T Consensus       109 l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~---~~~~~~~~h~~~v~  185 (357)
T 4g56_B          109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK---AVLKSYNAHSSEVN  185 (357)
T ss_dssp             EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEE
T ss_pred             EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCCCEE
Confidence            567889999999987654322  2334589999999999999999999999999999998754   45667889999999


Q ss_pred             EEEEcCCCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEcCCc
Q 018675          168 MVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       168 ~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~~~dg~i~iwd~~~  245 (352)
                      +++|+|++. ++++++.|+.|++||+.....     ...+  ....|...+.+++|+|+ +.+|++|+.|+.|++||++.
T Consensus       186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~-----~~~~--~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~  258 (357)
T 4g56_B          186 CVAACPGKDTIFLSCGEDGRILLWDTRKPKP-----ATRI--DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN  258 (357)
T ss_dssp             EEEECTTCSSCEEEEETTSCEEECCTTSSSC-----BCBC--CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred             EEEEccCCCceeeeeccCCceEEEECCCCce-----eeee--eeccccccccchhhhhcccceEEEeecccceeEEECCC
Confidence            999999875 789999999999998765422     1111  12346678999999997 56788999999999999864


Q ss_pred             cccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeE
Q 018675          246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS  323 (352)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  323 (352)
                      .+.           ...+ ..+...+.+++|++++  ++++++.|++|++|+....         +++. ..+|...|++
T Consensus       259 ~~~-----------~~~~-~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---------~~~~-~~~H~~~V~~  316 (357)
T 4g56_B          259 PDS-----------AQTS-AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---------EVFR-DLSHRDFVTG  316 (357)
T ss_dssp             GGG-----------CEEE-CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---------EEEE-ECCCSSCEEE
T ss_pred             CcE-----------eEEE-eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---------cEeE-ECCCCCCEEE
Confidence            321           1222 2467789999999864  6899999999999965432         2222 3479999999


Q ss_pred             EEecCCCcceEEEecCCCeEEEEeecc
Q 018675          324 VQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       324 ~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ++|+|.+..+|+|+|.||+|++|++..
T Consensus       317 vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          317 VAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             EEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             EEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            999994335789999999999999854

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.8e-41  Score=321.08  Aligned_cols=304  Identities=22%  Similarity=0.328  Sum_probs=233.0

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeee--eeecceecceEEEEECCCCCEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA--VLEEMHTRTVRSCAWSPSGKLL   89 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l   89 (352)
                      +.+.++.+|.+.|++++|+|+      +++|||++.|++|++|+..++........  .....|...|.+++|+|+|++|
T Consensus       181 ~~~~~l~~H~~~V~~v~fspd------g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l  254 (611)
T 1nr0_A          181 KFKSTFGEHTKFVHSVRYNPD------GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI  254 (611)
T ss_dssp             EEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred             eEeeeeccccCceEEEEECCC------CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEE
Confidence            445678999999999999997      57999999999999999877653322110  0011589999999999999999


Q ss_pred             EEEeCCCcEEEEEccCCcee-----------------------------------------eeEeeccccCCeeEEEECC
Q 018675           90 ATASFDATTCIWEDVGGDYE-----------------------------------------CVATLEGHENEVKSVSWNA  128 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~-----------------------------------------~~~~~~~h~~~v~~v~~~~  128 (352)
                      ++++.|++|++||..+++..                                         +...+.+|...|++++|+|
T Consensus       255 ~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp  334 (611)
T 1nr0_A          255 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA  334 (611)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             EEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC
Confidence            99999999999997654321                                         1234568999999999999


Q ss_pred             CCcEEEEeeCCCcEEEEecCCCCeeEE-----------------------------------------------------
Q 018675          129 SGTLLATCGRDKSVWIWEVMPGNEFEC-----------------------------------------------------  155 (352)
Q Consensus       129 ~~~~l~s~~~d~~v~vwd~~~~~~~~~-----------------------------------------------------  155 (352)
                      ++++|++++.|++|++||+..+.....                                                     
T Consensus       335 dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~  414 (611)
T 1nr0_A          335 DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP  414 (611)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCC
Confidence            999999999999999999864321000                                                     


Q ss_pred             ---------------------------EEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeec
Q 018675          156 ---------------------------VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE  208 (352)
Q Consensus       156 ---------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~  208 (352)
                                                 +..+ .|...+.+++|+|++++|++|+.|+.|++|++....   ......   
T Consensus       415 ~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~---~~~~~~---  487 (611)
T 1nr0_A          415 LGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS---VSEVKT---  487 (611)
T ss_dssp             EEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE---EEEEEE---
T ss_pred             cEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc---eeeeec---
Confidence                                       0000 123457789999999999999999999999875421   111111   


Q ss_pred             cCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc-cccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecC
Q 018675          209 SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI-TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGA  286 (352)
Q Consensus       209 ~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~  286 (352)
                        .+|...|.+++|+|++++|++++.|++|++|++.. .+....          .....|...|.+++|+|++ +|++++
T Consensus       488 --~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~----------~~~~~H~~~V~~v~fspdg~~lasgs  555 (611)
T 1nr0_A          488 --IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT----------NSWTFHTAKVACVSWSPDNVRLATGS  555 (611)
T ss_dssp             --EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC----------CCCCCCSSCEEEEEECTTSSEEEEEE
T ss_pred             --cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee----------eeeeecccceeEEEECCCCCEEEEEE
Confidence              36889999999999999999999999999998753 111100          0112377889999999986 799999


Q ss_pred             CCCeEEEEEccCCccccCcccceeeeccccc-CcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          287 ADDSVQFFVESKDDLIDGPSYKMLLKKEKAH-DMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       287 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      .|+++++|+......       .+.....+| ...|++++|+|+++  |+|++.|++|++|++.
T Consensus       556 ~D~~v~lW~~~~~~~-------~~~~~~~~h~~~~v~~v~fs~d~~--l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          556 LDNSVIVWNMNKPSD-------HPIIIKGAHAMSSVNSVIWLNETT--IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             TTSCEEEEETTCTTS-------CCEEETTSSTTSCEEEEEEEETTE--EEEEETTSCEEEEECC
T ss_pred             CCCcEEEEECCCccc-------ccchhhccCcccCeeEEEEcCCCE--EEEecCCCCEEEEecc
Confidence            999999997643210       111335688 89999999999985  7899999999999984

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.3e-41  Score=328.18  Aligned_cols=309  Identities=20%  Similarity=0.375  Sum_probs=233.1

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      .....+++|.+.|++++|+|+.     ..+|+|||.|++|++|++................|...|.+++|+|++++|++
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~-----~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s  447 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDN-----ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALS  447 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTC-----CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             chhhhcccCCceeEEEEecCCC-----CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEE
Confidence            4445789999999999999864     46999999999999999876432211111122468999999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      |+.|++|++||..++  .+...+.+|...|.+++|+|++.+|++++.|++|++||+.............+|...|.+++|
T Consensus       448 gs~Dg~v~vwd~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  525 (694)
T 3dm0_A          448 GSWDGELRLWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF  525 (694)
T ss_dssp             EETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEE
T ss_pred             EeCCCcEEEEECCCC--cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEE
Confidence            999999999998776  345677899999999999999999999999999999997543221111122468888999999


Q ss_pred             cCCC--CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccc
Q 018675          172 HPTM--DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ  249 (352)
Q Consensus       172 ~~~~--~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  249 (352)
                      +|++  ..+++++.|+.|++|++...     .....+    .+|...|.+++|+|++.+|++|+.||.|++||++..+. 
T Consensus       526 ~~~~~~~~l~s~s~d~~v~vwd~~~~-----~~~~~~----~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~-  595 (694)
T 3dm0_A          526 SPNTLQPTIVSASWDKTVKVWNLSNC-----KLRSTL----AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK-  595 (694)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTC-----CEEEEE----CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE-
T ss_pred             eCCCCcceEEEEeCCCeEEEEECCCC-----cEEEEE----cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce-
Confidence            9986  58999999999999987643     222223    47999999999999999999999999999999864321 


Q ss_pred             cCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCccccee----------eecccccCc
Q 018675          250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML----------LKKEKAHDM  319 (352)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~----------~~~~~~h~~  319 (352)
                                ...+  .+...+.+++|++++.+++++.++.+++|+.....+.........          ......+..
T Consensus       596 ----------~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (694)
T 3dm0_A          596 ----------LYSL--EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVI  663 (694)
T ss_dssp             ----------EECC--BCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCC
T ss_pred             ----------EEEe--cCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeE
Confidence                      1111  134568899999999877778888999998765432211000000          000012223


Q ss_pred             ceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          320 DVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       320 ~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .+++++|+|+++ +|+||+.||+|+||++.+
T Consensus       664 ~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          664 YCTSLNWSADGS-TLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred             EeeeEEEcCCCC-EEEEEcCCCeEEEEeccC
Confidence            588999999986 688999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-40  Score=300.16  Aligned_cols=303  Identities=26%  Similarity=0.380  Sum_probs=228.0

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeee-------------cceecceEEEEECCC
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLE-------------EMHTRTVRSCAWSPS   85 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~-------------~~h~~~v~~~~~s~~   85 (352)
                      +|.+.|+|++|+|+      +++||+++ |+++++|+..++...........             ..+...|++++|+|+
T Consensus        62 ~h~~~V~~v~fspd------g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d  134 (393)
T 1erj_A           62 DHTSVVCCVKFSND------GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD  134 (393)
T ss_dssp             ECSSCCCEEEECTT------SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred             CCCCEEEEEEECCC------CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence            69999999999997      57899875 78999999987654322211000             012235999999999


Q ss_pred             CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccC
Q 018675           86 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD  165 (352)
Q Consensus        86 ~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~  165 (352)
                      |++|++|+.|++|++||..++  .....+.+|...|.+++|+|++++|++++.|++|++||+..+.   +...+. +...
T Consensus       135 g~~l~s~~~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~-~~~~  208 (393)
T 1erj_A          135 GKFLATGAEDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---CSLTLS-IEDG  208 (393)
T ss_dssp             SSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEE-CSSC
T ss_pred             CCEEEEEcCCCeEEEEECCCC--cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe---eEEEEE-cCCC
Confidence            999999999999999998766  4566788999999999999999999999999999999997653   233333 5567


Q ss_pred             eeEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeee---ccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          166 VKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS---ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       166 v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~---~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iw  241 (352)
                      +.+++|+| ++.++++++.|+.|++|+.....     ....+.   ....+|...|.+++|+|++++|++|+.|+.|++|
T Consensus       209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-----~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w  283 (393)
T 1erj_A          209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-----LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW  283 (393)
T ss_dssp             EEEEEECSTTCCEEEEEETTSCEEEEETTTCC-----EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            99999999 88999999999999999875432     122221   1224789999999999999999999999999999


Q ss_pred             cCCccccccCCCC-ccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCc
Q 018675          242 GADITRMQSGDGY-ASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM  319 (352)
Q Consensus       242 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~  319 (352)
                      |++.......... ........+ ..|...+.++++++++ ++++++.|+.+++|+....         ..+....+|..
T Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---------~~~~~l~~h~~  353 (393)
T 1erj_A          284 NLQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---------NPLLMLQGHRN  353 (393)
T ss_dssp             EC---------------CEEEEE-ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---------CEEEEEECCSS
T ss_pred             ECCCCCCcccccCCCCCcceEEE-ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------eEEEEECCCCC
Confidence            9864321110000 000111122 2467789999999875 7999999999999976432         22344578999


Q ss_pred             ceeEEEecC------CCcceEEEecCCCeEEEEeecc
Q 018675          320 DVNSVQWSP------GERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       320 ~i~~~~~sp------~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .|++++|+|      ++ .+|+||+.||+|+||++..
T Consensus       354 ~v~~v~~~~~~~~~p~~-~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          354 SVISVAVANGSSLGPEY-NVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             CEEEEEECSSCTTCTTC-EEEEEEETTSEEEEEEEEE
T ss_pred             CEEEEEecCCcCcCCCC-CEEEEECCCCcEEECcccc
Confidence            999999986      44 4789999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.8e-40  Score=308.89  Aligned_cols=283  Identities=34%  Similarity=0.611  Sum_probs=235.3

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..+..+.+|.+.|++++|+|+      ++++++++.|+++++|+......     ..+ ..|...|.+++|+|+++.|++
T Consensus       294 ~~~~~~~~h~~~v~~~~~~~~------~~~l~t~~~d~~i~~w~~~~~~~-----~~~-~~~~~~v~~~~~s~~g~~l~~  361 (577)
T 2ymu_A          294 QLLQTLTGHSSSVWGVAFSPD------GQTIASASDDKTVKLWNRNGQHL-----QTL-TGHSSSVWGVAFSPDGQTIAS  361 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTSCEE-----EEE-CCCSSCEEEEEECTTSSEEEE
T ss_pred             cEEEEEecCCCCeEEEEECCC------CCEEEEEeCCCeEEEEeCCCCee-----EEE-eCCCCCEEEEEECCCCCEEEE
Confidence            345678899999999999997      57999999999999999765421     111 357889999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      |+.|+.+++|+.. +  .....+.+|...|++++|+|++++|++++.|++|++||.. +   +.+..+.+|...|++++|
T Consensus       362 ~~~dg~v~~~~~~-~--~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~---~~~~~~~~~~~~v~~~~~  434 (577)
T 2ymu_A          362 ASDDKTVKLWNRN-G--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHSSSVWGVAF  434 (577)
T ss_dssp             EETTSEEEEEETT-C--CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C---CEEEEEECCSSCEEEEEE
T ss_pred             EeCCCEEEEEcCC-C--CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C---CEEEEecCCCCCeEEEEE
Confidence            9999999999853 3  3466778899999999999999999999999999999963 3   345677889999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG  251 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (352)
                      +|++.+|++++.|+.|++|+...      .....+    .+|...|.+++|+|++++|++++.|+.|++|+...      
T Consensus       435 s~d~~~l~~~~~d~~v~~w~~~~------~~~~~~----~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~------  498 (577)
T 2ymu_A          435 SPDDQTIASASDDKTVKLWNRNG------QLLQTL----TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------  498 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTS------CEEEEE----ECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS------
T ss_pred             CCCCCEEEEEcCCCEEEEEECCC------CEEEEE----cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC------
Confidence            99999999999999999998532      123333    36889999999999999999999999999998531      


Q ss_pred             CCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCC
Q 018675          252 DGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE  330 (352)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~  330 (352)
                            +....+. .|...+.+++|+|++ +|++++.|+.+++|+...          +.+....+|...|++++|+||+
T Consensus       499 ------~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~----------~~~~~~~~h~~~v~~~~fs~dg  561 (577)
T 2ymu_A          499 ------QLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------QLLQTLTGHSSSVWGVAFSPDG  561 (577)
T ss_dssp             ------CEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS----------CEEEEEECCSSCEEEEEECTTS
T ss_pred             ------CEEEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC----------CEEEEEcCCCCCEEEEEEcCCC
Confidence                  1122232 467889999999976 799999999999996432          2344567999999999999998


Q ss_pred             cceEEEecCCCeEEEEe
Q 018675          331 RRLLASASDDGMIKIWE  347 (352)
Q Consensus       331 ~~~l~s~~~Dg~i~iw~  347 (352)
                      + +|+|+|.|++|++||
T Consensus       562 ~-~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          562 Q-TIASASSDKTVKLWN  577 (577)
T ss_dssp             S-CEEEEETTSCEEEEC
T ss_pred             C-EEEEEeCCCEEEEeC
Confidence            7 578999999999997

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.7e-39  Score=280.26  Aligned_cols=263  Identities=24%  Similarity=0.434  Sum_probs=206.4

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC--CCEEEE
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS--GKLLAT   91 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s   91 (352)
                      +..+.+|.+.|++++|+|+      +++||||+.|++|+||++.....  .+...+ ..|..+|.+++|+|+  +++|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~------g~~las~s~D~~v~iw~~~~~~~--~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s   72 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYY------GKRMATCSSDKTIKIFEVEGETH--KLIDTL-TGHEGPVWRVDWAHPKFGTILAS   72 (297)
T ss_dssp             CEECCSCSSCEEEEEECTT------SSEEEEEETTSCEEEEEBCSSCB--CCCEEE-CCCSSCEEEEEECCGGGCSEEEE
T ss_pred             ceeccCCcCceEEEEECCC------CCEEEEEeCCCEEEEEecCCCCc--EEEEEE-ccccCCeEEEEecCCCcCCEEEE
Confidence            4568899999999999997      57999999999999999864321  111222 458999999999874  899999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCC--CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV  169 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~  169 (352)
                      |+.|++|++||..++.......+.+|...|++++|+|+  +.+|++++.|++|++||+....... ...+.+|...|.++
T Consensus        73 ~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~-~~~~~~h~~~v~~~  151 (297)
T 2pm7_B           73 CSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNSA  151 (297)
T ss_dssp             EETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-CEEEECCSSCEEEE
T ss_pred             EcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-eeeeecccCccceE
Confidence            99999999999877654556677889999999999997  8899999999999999987543221 24567899999999


Q ss_pred             EEcCC-------------CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC---CEEEEEe
Q 018675          170 QWHPT-------------MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG---DKLVSCS  233 (352)
Q Consensus       170 ~~~~~-------------~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~---~~l~s~~  233 (352)
                      +|+|+             +.+|++|+.|+.|++|++.... ..+.....    ..+|...|.+++|+|++   .+|++++
T Consensus       152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~-~~~~~~~~----l~~H~~~V~~v~~sp~~~~~~~las~s  226 (297)
T 2pm7_B          152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-QTYVLEST----LEGHSDWVRDVAWSPTVLLRSYMASVS  226 (297)
T ss_dssp             EECCCC------------CCEEEEEETTSCEEEEEEETTT-TEEEEEEE----ECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             eecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC-ceEEEEEE----ecCCCCceEEEEECCCCCCceEEEEEE
Confidence            99997             4689999999999999876432 11212222    34799999999999984   8999999


Q ss_pred             CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeec
Q 018675          234 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK  313 (352)
Q Consensus       234 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~  313 (352)
                      .|++|++||++....       .+.                                                 ... ..
T Consensus       227 ~D~~v~iWd~~~~~~-------~~~-------------------------------------------------~~~-~~  249 (297)
T 2pm7_B          227 QDRTCIIWTQDNEQG-------PWK-------------------------------------------------KTL-LK  249 (297)
T ss_dssp             TTSCEEEEEESSTTS-------CCE-------------------------------------------------EEE-SS
T ss_pred             CCCcEEEEEeCCCCC-------ccc-------------------------------------------------eee-ee
Confidence            999999998642100       000                                                 000 01


Q ss_pred             ccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       314 ~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ...|...|.+++|+|+++ +||+++.||+|+||+..
T Consensus       250 ~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          250 EEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEEEC
T ss_pred             cccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEEEC
Confidence            235778899999999986 68899999999999975

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.8e-39  Score=285.01  Aligned_cols=309  Identities=17%  Similarity=0.260  Sum_probs=235.8

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCC
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDA   96 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~   96 (352)
                      +..|.+.|++++|+|+      +++|++++.|+.|++|+..+.+.  .....+ ..|...|++++|+|++++|++++.|+
T Consensus         4 ~~~~~~~i~~~~~s~~------~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg   74 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKD------RTQIAICPNNHEVHIYEKSGNKW--VQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDR   74 (372)
T ss_dssp             EESCSSCCCEEEECTT------SSEEEEECSSSEEEEEEEETTEE--EEEEEE-ECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             ecccCCCeEEEEECCC------CCEEEEEeCCCEEEEEeCCCCcE--Eeeeee-cCCCCcccEEEEeCCCCEEEEEcCCC
Confidence            4469999999999997      57999999999999999877631  112222 35889999999999999999999999


Q ss_pred             cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEE-EeecCccCeeEEEEcCCC
Q 018675           97 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS-VLQGHAQDVKMVQWHPTM  175 (352)
Q Consensus        97 ~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~  175 (352)
                      .+++|+..+++......+..|...|.+++|+|++++|++++.|+.|++||+.......... ...+|...+.+++|+|++
T Consensus        75 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C           75 NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             eEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence            9999998877655555667899999999999999999999999999999997665433333 335688899999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCCC-------------CCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEc
Q 018675          176 DVLFSCSYDNTIKVWWAEDTDS-------------DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG  242 (352)
Q Consensus       176 ~~l~s~~~d~~i~iw~~~~~~~-------------~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd  242 (352)
                      .++++++.|+.|++|++.....             ........    ..+|...|.+++|+|++.+|++++.||.|++||
T Consensus       155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  230 (372)
T 1k8k_C          155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE----SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD  230 (372)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE----CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEe----cCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            9999999999999999642110             01122222    236888999999999999999999999999999


Q ss_pred             CCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccC--Ccc--cc---------------
Q 018675          243 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK--DDL--ID---------------  303 (352)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~--~~~--~~---------------  303 (352)
                      ++..+           ....+. .+...+.++.|++++.+++++.|+.+++|+...  ...  ..               
T Consensus       231 ~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (372)
T 1k8k_C          231 ADKKM-----------AVATLA-SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA  298 (372)
T ss_dssp             GGGTT-----------EEEEEE-CSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred             CCCCc-----------eeEEEc-cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence            75321           222222 356679999999988665556999999998765  210  00               


Q ss_pred             -------Cccccee------eecccccCcceeEEEecCCCc---ceEEEecCCCeEEEEeecc
Q 018675          304 -------GPSYKML------LKKEKAHDMDVNSVQWSPGER---RLLASASDDGMIKIWELAN  350 (352)
Q Consensus       304 -------~~~~~~~------~~~~~~h~~~i~~~~~sp~~~---~~l~s~~~Dg~i~iw~~~~  350 (352)
                             .......      .....+|...|++++|+|.+.   .+|+|++.||.|++|++..
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          299 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             hhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence                   0000000      112248999999999774442   4789999999999999854

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.2e-39  Score=287.97  Aligned_cols=327  Identities=17%  Similarity=0.322  Sum_probs=234.6

Q ss_pred             ccceeeeeee-cCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC-
Q 018675            8 NYELREIQTL-EGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS-   85 (352)
Q Consensus         8 ~~~~~~~~~~-~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-   85 (352)
                      .+++.....+ ++|.+.|++++|+|... + ....+++++.|+.|++|+..+..............|...|++++|+|+ 
T Consensus         4 ~~~~~~~~~~~~~h~~~v~~i~~~p~~~-~-~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   81 (366)
T 3k26_A            4 KYSFKCVNSLKEDHNQPLFGVQFNWHSK-E-GDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDS   81 (366)
T ss_dssp             -CCCEEEEEEECTTCSCEEEEEECTTCC-T-TSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECT
T ss_pred             eeEEEEEEEeecCCCCceEEEEEecccC-C-CCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCC
Confidence            4455555444 59999999999999410 0 024566666677999999986654333322222236678999999998 


Q ss_pred             ---CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEe--
Q 018675           86 ---GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVL--  159 (352)
Q Consensus        86 ---~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--  159 (352)
                         +++|++|+.|+.|++||..+++  .+..+.+|...|.+++|+| ++++|++++.|++|++||+..+.   .+..+  
T Consensus        82 ~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~  156 (366)
T 3k26_A           82 NTSHPLLAVAGSRGIIRIINPITMQ--CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT---LVAIFGG  156 (366)
T ss_dssp             TTCCEEEEEEETTCEEEEECTTTCC--EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE---EEEEECS
T ss_pred             CCCCCEEEEecCCCEEEEEEchhce--EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe---EEEEecc
Confidence               6799999999999999987663  4667788999999999999 89999999999999999997654   33444  


Q ss_pred             -ecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCC-ce------------------eEeeeeccCCCCcccEEE
Q 018675          160 -QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN-WH------------------CVQTISESNNGHSSTIWA  219 (352)
Q Consensus       160 -~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~------------------~~~~~~~~~~~h~~~i~~  219 (352)
                       .+|...|.+++|+|++..+++++.|+.|++|++....... ..                  ..........+|...|.+
T Consensus       157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  236 (366)
T 3k26_A          157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC  236 (366)
T ss_dssp             TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred             cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence             6799999999999999999999999999999876421000 00                  000000112348899999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEcCCccccc--cCCCCc-cceeeEEeecccCcceEEEEecCC--c-eEEecCCCCeEEE
Q 018675          220 LSFNAKGDKLVSCSDDLTIKIWGADITRMQ--SGDGYA-SWRHLCTISGYHDRTIFSVHWSRE--G-IIASGAADDSVQF  293 (352)
Q Consensus       220 l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~--~-~~~s~~~d~~v~~  293 (352)
                      ++|+  +++|++++.||.|++||++.....  ...... .......+ ..|...+..+.++++  + ++++++.|+.+++
T Consensus       237 ~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~v  313 (366)
T 3k26_A          237 VRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYV  313 (366)
T ss_dssp             EEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-ECSSCCSSCCCCEECTTSSEEEEECTTSCEEE
T ss_pred             EEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc-cccCCcEEEEEEcCCCCCcEEEEEecCCcEEE
Confidence            9998  779999999999999997643210  000111 11122222 235666777777776  4 8899999999999


Q ss_pred             EEccCCccccCcccceeeeccccc--CcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          294 FVESKDDLIDGPSYKMLLKKEKAH--DMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      |+.......     ........+|  ...|++++|+|+++ +|++++.||.|+|||+.+
T Consensus       314 wd~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          314 WDLEVEDPH-----KAKCTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EECCSSSGG-----GCEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred             EECCCCCCc-----cccceEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEEEecC
Confidence            977543221     1122234455  79999999999986 688999999999999853

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.4e-38  Score=285.40  Aligned_cols=309  Identities=15%  Similarity=0.172  Sum_probs=230.9

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC-CCCEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP-SGKLL   89 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l   89 (352)
                      .....++.+|.+.|++++|+|+.     ..+|++|+.|++|++|++.+.......   ....|...|.+++|+| ++++|
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l  134 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTH-----PTTVAVGSKGGDIILWDYDVQNKTSFI---QGMGPGDAITGMKFNQFNTNQL  134 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSC-----TTEEEEEEBTSCEEEEETTSTTCEEEE---CCCSTTCBEEEEEEETTEEEEE
T ss_pred             cceEEeccCCCCCEEEEEECCCC-----CCEEEEEcCCCeEEEEeCCCcccceee---ecCCcCCceeEEEeCCCCCCEE
Confidence            35667889999999999999973     269999999999999999876532111   1124889999999999 78999


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEE
Q 018675           90 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV  169 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~  169 (352)
                      ++++.|+.+++||..+..........+|...|.+++|+|++++|++++.|+.|++||+. +   .++..+.+|...|.++
T Consensus       135 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~---~~~~~~~~h~~~v~~~  210 (383)
T 3ei3_B          135 FVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G---HEIFKEKLHKAKVTHA  210 (383)
T ss_dssp             EEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S---CEEEEEECSSSCEEEE
T ss_pred             EEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C---CEEEEeccCCCcEEEE
Confidence            99999999999998764433333334455889999999999999999999999999984 3   2456778899999999


Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEcCCccc
Q 018675          170 QWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVSCSDDLTIKIWGADITR  247 (352)
Q Consensus       170 ~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~  247 (352)
                      +|+|++. ++++++.|+.|++|++...... ......+     +|...|.+++|+| ++.+|++++.|+.|++||++...
T Consensus       211 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~-----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          211 EFNPRCDWLMATSSVDATVKLWDLRNIKDK-NSYIAEM-----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEEGGGCCST-TCEEEEE-----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred             EECCCCCCEEEEEeCCCEEEEEeCCCCCcc-cceEEEe-----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence            9999998 9999999999999998753211 1222222     4788999999999 99999999999999999986432


Q ss_pred             ccc-CCCCc----cc-eeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeeccc--ccCc
Q 018675          248 MQS-GDGYA----SW-RHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEK--AHDM  319 (352)
Q Consensus       248 ~~~-~~~~~----~~-~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~--~h~~  319 (352)
                      ... ..+..    .. .... ..-.....+..+.+++++.+ +++.|+.+++|+.....         .+....  .|..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~---------~~~~l~~~~~~~  353 (383)
T 3ei3_B          285 KPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGG---------LVHQLRDPNAAG  353 (383)
T ss_dssp             SCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCC---------EEEEECBTTBCS
T ss_pred             cccccccccccccccccceE-EeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCc---------eeeeecCCCCCc
Confidence            110 00000    00 0000 00001234556777787766 89999999999765322         122233  3667


Q ss_pred             ceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          320 DVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       320 ~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .+..++|+|+++ +|++++ ||.|+||++..
T Consensus       354 ~~~~~~~s~~g~-~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          354 IISLNKFSPTGD-VLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CCCEEEECTTSS-EEEEEE-TTEEEEEECC-
T ss_pred             eEEEEEEecCcc-EEEEec-CCcEEEEecCC
Confidence            788889999986 678887 99999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.9e-40  Score=298.38  Aligned_cols=309  Identities=17%  Similarity=0.197  Sum_probs=218.0

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC-CCCEEEEE
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP-SGKLLATA   92 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~   92 (352)
                      .....+|...|+|++|+|.+     +.+||+|+.||+|+|||+.++.....   .....|...|++++|+| ++++|++|
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~-----~~~lasGs~dg~i~lWd~~~~~~~~~---~~~~gH~~~V~~l~f~p~~~~~l~s~  183 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTH-----PSTVAVGSKGGDIMLWNFGIKDKPTF---IKGIGAGGSITGLKFNPLNTNQFYAS  183 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSC-----TTCEEEEETTSCEEEECSSCCSCCEE---ECCCSSSCCCCEEEECSSCTTEEEEE
T ss_pred             cccCCCCCCCEEEEEEeCCC-----CCEEEEEeCCCEEEEEECCCCCceeE---EEccCCCCCEEEEEEeCCCCCEEEEE
Confidence            34567899999999999964     46899999999999999876543211   11235899999999998 68999999


Q ss_pred             eCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEc
Q 018675           93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH  172 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~  172 (352)
                      +.|++|++||..++..........+...+.+++|+|++.+|++|+.|++|++||+.. +   .+..+.+|...|.+++|+
T Consensus       184 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~---~~~~~~~h~~~v~~v~~~  259 (435)
T 4e54_B          184 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-K---ELWNLRMHKKKVTHVALN  259 (435)
T ss_dssp             CSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-C---BCCCSBCCSSCEEEEEEC
T ss_pred             eCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-c---eeEEEecccceEEeeeec
Confidence            999999999987654333333334455688999999999999999999999999853 2   245677899999999999


Q ss_pred             CCCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc-
Q 018675          173 PTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS-  250 (352)
Q Consensus       173 ~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-  250 (352)
                      |++. ++++++.|+.|++||+.......     .+ ....+|...|.+++|+|++.+|++++.||.|++||+....... 
T Consensus       260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~-----~~-~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          260 PCCDWFLATASVDQTVKIWDLRQVRGKA-----SF-LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             TTCSSEEEEEETTSBCCEEETTTCCSSS-----CC-SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred             CCCceEEEEecCcceeeEEecccccccc-----eE-EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE
Confidence            9876 78899999999999986543211     11 1224789999999999999999999999999999986432110 


Q ss_pred             CCCCc--cce---eeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeE
Q 018675          251 GDGYA--SWR---HLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS  323 (352)
Q Consensus       251 ~~~~~--~~~---~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  323 (352)
                      .....  ...   ...... ........+...+++  .++++..++.|++|+.....        .+.....+|...|.+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~--------~~~~l~~~~~~~v~s  404 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAW-HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK--------MMCQLYDPESSGISS  404 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEE-CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC--------EEEEECCSSCCCCCC
T ss_pred             EecccccccccceeEEEEE-cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc--------EEEEEeCCCCCcEEE
Confidence            00000  000   000000 011222333333332  33344455679999654321        122234578888998


Q ss_pred             E-EecCCCcceEEEecCCCeEEEEeeccC
Q 018675          324 V-QWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       324 ~-~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      + +|+|+++ +|++|+ |+.|+||+++.+
T Consensus       405 ~~~fspdg~-~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          405 LNEFNPMGD-TLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             EEEECTTSS-CEEEEC-SSEEEECCCC--
T ss_pred             EEEECCCCC-EEEEEc-CCcEEEEECCcC
Confidence            8 6999986 677776 889999998754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-37  Score=273.46  Aligned_cols=290  Identities=16%  Similarity=0.255  Sum_probs=233.8

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      ...+|.+.|++++|+|+      ++++++++ |+.|++|++.++.............|...|.+++|+|++++|++++.|
T Consensus        46 ~~~~h~~~v~~~~~~~~------~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  118 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNP------TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA  118 (337)
T ss_dssp             EEECCSSCCCEEEECSS------SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred             eeccCCCceEEEEEecC------CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC
Confidence            34489999999999997      57899988 999999998765422111111112477899999999999999999999


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCC
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM  175 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  175 (352)
                      +.+++|+..+++......+..|...|.+++|+|++++|++++.|+.|++||+..+   +....+..|...+.+++|+|++
T Consensus       119 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~  195 (337)
T 1gxr_A          119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTS
T ss_pred             CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---ceeeeeecccCceEEEEECCCC
Confidence            9999999887765566677889999999999999999999999999999998754   3456677899999999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCc
Q 018675          176 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA  255 (352)
Q Consensus       176 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  255 (352)
                      ..+++++.|+.|++|++...     .....+     .+...+.+++|+|+++++++++.|+.|++||++....       
T Consensus       196 ~~l~~~~~dg~i~~~d~~~~-----~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-------  258 (337)
T 1gxr_A          196 TKLWTGGLDNTVRSWDLREG-----RQLQQH-----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-------  258 (337)
T ss_dssp             SEEEEEETTSEEEEEETTTT-----EEEEEE-----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-------
T ss_pred             CEEEEEecCCcEEEEECCCC-----ceEeee-----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-------
Confidence            99999999999999987643     222222     3567899999999999999999999999999763221       


Q ss_pred             cceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceE
Q 018675          256 SWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLL  334 (352)
Q Consensus       256 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l  334 (352)
                           .. ...|...+.++.|++++ ++++++.|+.+++|+......        +  ....|...|++++|+|+++ +|
T Consensus       259 -----~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~--------~--~~~~~~~~v~~~~~s~~~~-~l  321 (337)
T 1gxr_A          259 -----YQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--------I--FQSKESSSVLSCDISVDDK-YI  321 (337)
T ss_dssp             -----EE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------E--EEEECSSCEEEEEECTTSC-EE
T ss_pred             -----EE-EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE--------E--EEecCCCcEEEEEECCCCC-EE
Confidence                 11 12367789999999875 789999999999997654211        1  1235788999999999986 67


Q ss_pred             EEecCCCeEEEEeec
Q 018675          335 ASASDDGMIKIWELA  349 (352)
Q Consensus       335 ~s~~~Dg~i~iw~~~  349 (352)
                      ++++.||.|++|++.
T Consensus       322 ~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          322 VTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEETTSCEEEEEEE
T ss_pred             EEecCCCeEEEEEEe
Confidence            899999999999985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.1e-40  Score=293.49  Aligned_cols=314  Identities=18%  Similarity=0.302  Sum_probs=220.8

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      .+..|.+.|++++|+|+      +++|++++.|++|++|++.++.  +.....+ ..|...|.+++|+|++++|++++.|
T Consensus         6 ~~~~~~~~v~~~~~s~~------g~~l~~~~~d~~i~iw~~~~~~--~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~d   76 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQ------RTEFVTTTATNQVELYEQDGNG--WKHARTF-SDHDKIVTCVDWAPKSNRIVTCSQD   76 (377)
T ss_dssp             EEEECSSCCSCCEECSS------SSEEECCCSSSCBCEEEEETTE--EEECCCB-CCCSSCEEEEEECTTTCCEEEEETT
T ss_pred             eEecCCCcEEEEEECCC------CCEEEEecCCCEEEEEEccCCc--eEEEEEE-ecCCceEEEEEEeCCCCEEEEEeCC
Confidence            34457789999999997      5799999999999999997652  1112222 3588999999999999999999999


Q ss_pred             CcEEEEEccCCc-eeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec-CccCeeEEEEcC
Q 018675           96 ATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG-HAQDVKMVQWHP  173 (352)
Q Consensus        96 ~~i~i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~  173 (352)
                      +++++||..++. ..+...+.+|...|.+++|+|++++|++++.|++|++||+...........+.. |...|.+++|+|
T Consensus        77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~  156 (377)
T 3dwl_C           77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP  156 (377)
T ss_dssp             SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred             CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence            999999987654 335566778999999999999999999999999999999976543333455666 999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCC------ce---eEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          174 TMDVLFSCSYDNTIKVWWAEDTDSDN------WH---CVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       174 ~~~~l~s~~~d~~i~iw~~~~~~~~~------~~---~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      ++.+|++++.|+.|++|++.......      +.   ......... +|...|.+++|+|++++|++++.||.|++||++
T Consensus       157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~  235 (377)
T 3dwl_C          157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS  235 (377)
T ss_dssp             TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred             CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            99999999999999999975321100      00   011122222 789999999999999999999999999999976


Q ss_pred             ccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCcc-----ccCccc-----------
Q 018675          245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDL-----IDGPSY-----------  307 (352)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~-----~~~~~~-----------  307 (352)
                      .....       ......+ ..|...+.++.|++++ ++++++.++.+ +|.......     .+....           
T Consensus       236 ~~~~~-------~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (377)
T 3dwl_C          236 APEQP-------PRALITV-KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTG  306 (377)
T ss_dssp             STTSC-------EEECCCE-ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBC
T ss_pred             CCCCc-------ceeeEee-cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccc
Confidence            43210       0001112 2366789999999987 55666555555 664432110     000000           


Q ss_pred             ---------------c------------eeeecccccCcceeEEEecCCCcc---eEEEecCCCeEEEEee
Q 018675          308 ---------------K------------MLLKKEKAHDMDVNSVQWSPGERR---LLASASDDGMIKIWEL  348 (352)
Q Consensus       308 ---------------~------------~~~~~~~~h~~~i~~~~~sp~~~~---~l~s~~~Dg~i~iw~~  348 (352)
                                     .            ........|...|+++++.+.+..   .|+|+|.||.|+|||+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          307 EGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                           0            000112349999999998765433   4889999999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.3e-39  Score=284.89  Aligned_cols=260  Identities=25%  Similarity=0.467  Sum_probs=201.0

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC--CCCEEEEEe
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP--SGKLLATAS   93 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~   93 (352)
                      .+.+|.+.|++++|+|+      +++|||||.|++|+||++.++...  ....+ ..|...|.+++|+|  ++++|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~------g~~lasgs~D~~v~lwd~~~~~~~--~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s   78 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYY------GTRLATCSSDRSVKIFDVRNGGQI--LIADL-RGHEGPVWQVAWAHPMYGNILASCS   78 (316)
T ss_dssp             ------CCEEEEEECGG------GCEEEEEETTTEEEEEEEETTEEE--EEEEE-ECCSSCEEEEEECCGGGSSCEEEEE
T ss_pred             ecccccCeEEEeeEcCC------CCEEEEEeCCCeEEEEEecCCCcE--EEEEE-cCCCccEEEEEeCCCCCCCEEEEEE
Confidence            46799999999999997      579999999999999998765321  11122 45899999999986  489999999


Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCC--CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      .|++|++||..++.......+.+|...|++++|+|+  +.+|++|+.|++|++||+...........+.+|...+.++.|
T Consensus        79 ~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (316)
T 3bg1_A           79 YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW  158 (316)
T ss_dssp             TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred             CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEE
Confidence            999999999877654556677899999999999997  789999999999999998765433334556788889999999


Q ss_pred             cCC-----------------CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC----CEEE
Q 018675          172 HPT-----------------MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG----DKLV  230 (352)
Q Consensus       172 ~~~-----------------~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~----~~l~  230 (352)
                      +|+                 +.+|++|+.|+.|++|+....  ..+....    ...+|...|.+++|+|++    .+|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~--~~~~~~~----~l~~h~~~V~~v~~sp~~~~~~~~la  232 (316)
T 3bg1_A          159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED--GQWKEEQ----KLEAHSDWVRDVAWAPSIGLPTSTIA  232 (316)
T ss_dssp             CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT--SCEEEEE----CCBCCSSCEEEEECCCCSSCSCCEEE
T ss_pred             ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC--Cccceee----ecccCCCceEEEEecCCCCCCCceEE
Confidence            997                 368999999999999987532  1122233    234799999999999986    7899


Q ss_pred             EEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCccccee
Q 018675          231 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML  310 (352)
Q Consensus       231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~  310 (352)
                      +++.|++|++|+++.....      .+                                                    .
T Consensus       233 s~s~D~~v~iw~~~~~~~~------~~----------------------------------------------------~  254 (316)
T 3bg1_A          233 SCSQDGRVFIWTCDDASSN------TW----------------------------------------------------S  254 (316)
T ss_dssp             EEETTCEEEEEECSSTTCC------CC----------------------------------------------------B
T ss_pred             EEcCCCeEEEEEccCcccc------ch----------------------------------------------------h
Confidence            9999999999986421000      00                                                    0


Q ss_pred             eecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       311 ~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ......|...|++++|+|+++ +|++++.||+|+||+..
T Consensus       255 ~~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          255 PKLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CCEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEEC
T ss_pred             hhhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEEC
Confidence            001135678899999999986 68899999999999975

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.4e-37  Score=293.54  Aligned_cols=285  Identities=34%  Similarity=0.599  Sum_probs=235.7

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      +.+..+.+|...|++++|+|+      ++.+++++.|+++++|+.....     ...+ ..|...|.+++|+|+++.|++
T Consensus       253 ~~~~~~~~~~~~v~~v~~~~d------~~~l~~~~~d~~i~~w~~~~~~-----~~~~-~~h~~~v~~~~~~~~~~~l~t  320 (577)
T 2ymu_A          253 QLLQTLTGHSSSVNGVAFRPD------GQTIASASDDKTVKLWNRNGQL-----LQTL-TGHSSSVWGVAFSPDGQTIAS  320 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTSCE-----EEEE-CCCSSCEEEEEECTTSSEEEE
T ss_pred             CEEEEEecCCCCEEEEEEcCC------CCEEEEEeCCCEEEEEeCCCcE-----EEEE-ecCCCCeEEEEECCCCCEEEE
Confidence            456678899999999999997      5789999999999999975421     1112 458899999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      ++.|+++++|+..+.   ....+.+|...|.+++|+|++++|++++.|+++++|+.. +   +.+..+.+|...|++++|
T Consensus       321 ~~~d~~i~~w~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~---~~~~~~~~~~~~v~~~~~  393 (577)
T 2ymu_A          321 ASDDKTVKLWNRNGQ---HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAF  393 (577)
T ss_dssp             EETTSCEEEEETTSC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-C---CEEEEEECCSSCEEEEEE
T ss_pred             EeCCCeEEEEeCCCC---eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-C---CEEEEecCCCCCeEEEEE
Confidence            999999999997543   345677899999999999999999999999999999953 3   345667889999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG  251 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (352)
                      +|++++|++++.|+.|++|+...      .....+    .+|...|++++|+|++++|++++.|+.|++|+....     
T Consensus       394 s~dg~~l~~~~~d~~v~~~~~~~------~~~~~~----~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~-----  458 (577)
T 2ymu_A          394 SPDGQTIASASDDKTVKLWNRNG------QLLQTL----TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ-----  458 (577)
T ss_dssp             CTTSSCEEEEETTSEEEEECTTC------CEEEEE----ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC-----
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCC------CEEEEe----cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC-----
Confidence            99999999999999999997422      223333    368899999999999999999999999999985321     


Q ss_pred             CCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCC
Q 018675          252 DGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE  330 (352)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~  330 (352)
                             ....+. .|...+.+++++|++ ++++++.|+.+++|+...          ..+....+|...|++++|+|++
T Consensus       459 -------~~~~~~-~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~----------~~~~~~~~h~~~v~~l~~s~dg  520 (577)
T 2ymu_A          459 -------LLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------QLLQTLTGHSSSVRGVAFSPDG  520 (577)
T ss_dssp             -------EEEEEE-CCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS----------CEEEEEECCSSCEEEEEECTTS
T ss_pred             -------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC----------CEEEEEeCCCCCEEEEEEcCCC
Confidence                   112222 367789999999976 789999999999997432          2334567899999999999998


Q ss_pred             cceEEEecCCCeEEEEeec
Q 018675          331 RRLLASASDDGMIKIWELA  349 (352)
Q Consensus       331 ~~~l~s~~~Dg~i~iw~~~  349 (352)
                      + +|++++.||.|+|||..
T Consensus       521 ~-~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          521 Q-TIASASDDKTVKLWNRN  538 (577)
T ss_dssp             S-CEEEEETTSEEEEECTT
T ss_pred             C-EEEEEECcCEEEEEeCC
Confidence            6 68899999999999964

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3e-38  Score=274.60  Aligned_cols=246  Identities=19%  Similarity=0.307  Sum_probs=203.3

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCC
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG  150 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~  150 (352)
                      ..|...|++++|+|++++|++|+.|+++++||..++  ..+..+..|..+|.+++|+|++++|++|+.|++|++||+..+
T Consensus        10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~   87 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG   87 (304)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            458899999999999999999999999999998766  346677889999999999999999999999999999999765


Q ss_pred             CeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcC-CCCEE
Q 018675          151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKL  229 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l  229 (352)
                      .   ++..+.+|...|.+++|+|++.++++|+.|+.|++|++....    .....    ..+|...|.+++|+| ++.+|
T Consensus        88 ~---~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----~~~~~----~~~h~~~v~~v~~~p~~~~~l  156 (304)
T 2ynn_A           88 E---KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----ALEQT----FEGHEHFVMCVAFNPKDPSTF  156 (304)
T ss_dssp             C---EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT----EEEEE----ECCCCSCEEEEEECTTCTTEE
T ss_pred             c---EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc----chhhh----hcccCCcEEEEEECCCCCCEE
Confidence            4   456788999999999999999999999999999999876431    12222    247999999999999 67899


Q ss_pred             EEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC--C-ceEEecCCCCeEEEEEccCCccccCcc
Q 018675          230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--E-GIIASGAADDSVQFFVESKDDLIDGPS  306 (352)
Q Consensus       230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~~s~~~d~~v~~~~~~~~~~~~~~~  306 (352)
                      ++|+.|++|++||++....           ...+...+...+..+.+.+  + .++++++.|+++++|+....       
T Consensus       157 ~sgs~D~~v~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-------  218 (304)
T 2ynn_A          157 ASGCLDRTVKVWSLGQSTP-----------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-------  218 (304)
T ss_dssp             EEEETTSEEEEEETTCSSC-----------SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-------
T ss_pred             EEEeCCCeEEEEECCCCCc-----------cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-------
Confidence            9999999999999753211           1122233455677777765  3 48999999999999976432       


Q ss_pred             cceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          307 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       307 ~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                        ..+....+|...|++++|+|+++ +|+||+.||+|+|||+..
T Consensus       219 --~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          219 --SCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             --EEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT
T ss_pred             --ccceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCC
Confidence              23445678999999999999986 688999999999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-37  Score=273.48  Aligned_cols=294  Identities=19%  Similarity=0.295  Sum_probs=232.7

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ....+|.+|.+.|++++|+|+      +++|++++.|+.|++|++.++.....    + ..|...|.+++|+|++++|++
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~------~~~l~~~~~dg~i~vwd~~~~~~~~~----~-~~h~~~v~~~~~~~~~~~l~s   91 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKE------GDLLFSCSKDSSASVWYSLNGERLGT----L-DGHTGTIWSIDVDCFTKYCVT   91 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTT------SCEEEEEESSSCEEEEETTTCCEEEE----E-CCCSSCEEEEEECTTSSEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCC------CCEEEEEeCCCEEEEEeCCCchhhhh----h-hhcCCcEEEEEEcCCCCEEEE
Confidence            344578899999999999997      57999999999999999987653322    2 358899999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCC-----CcEEEEecCCCCeeE--------EEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-----KSVWIWEVMPGNEFE--------CVSV  158 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~v~vwd~~~~~~~~--------~~~~  158 (352)
                      ++.|+.|++||..+++  +...+. +...|.+++|+|++.+|++++.+     +.|.+||+.......        ....
T Consensus        92 ~~~dg~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~  168 (369)
T 3zwl_B           92 GSADYSIKLWDVSNGQ--CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHK  168 (369)
T ss_dssp             EETTTEEEEEETTTCC--EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEE
T ss_pred             EeCCCeEEEEECCCCc--EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeee
Confidence            9999999999987764  344444 78899999999999999999999     999999986443211        1233


Q ss_pred             eecCcc--CeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCC
Q 018675          159 LQGHAQ--DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL  236 (352)
Q Consensus       159 ~~~h~~--~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg  236 (352)
                      +..|..  .+.+++|+|++..+++++.|+.|++|++...    ......+    ..|...|.+++|+|++.+|++++.||
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~  240 (369)
T 3zwl_B          169 IITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN----YEYVDSI----DLHEKSISDMQFSPDLTYFITSSRDT  240 (369)
T ss_dssp             EECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT----TEEEEEE----ECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC----cEeEEEE----ecCCCceeEEEECCCCCEEEEecCCc
Confidence            445555  8999999999999999999999999987642    1223333    25788999999999999999999999


Q ss_pred             cEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCC--------------eEEEEEccCCcc
Q 018675          237 TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADD--------------SVQFFVESKDDL  301 (352)
Q Consensus       237 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~--------------~v~~~~~~~~~~  301 (352)
                      .|++||++..+           ....+.  +...+..+.+++++ ++++++.++              .+++|+....  
T Consensus       241 ~i~v~d~~~~~-----------~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--  305 (369)
T 3zwl_B          241 NSFLVDVSTLQ-----------VLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE--  305 (369)
T ss_dssp             EEEEEETTTCC-----------EEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC--
T ss_pred             eEEEEECCCCc-----------eeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC--
Confidence            99999975322           122222  45678889999876 677777777              6777754332  


Q ss_pred             ccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          302 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       302 ~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                             ..+....+|...|++++|+|+++ +|++++.||.|+||++..
T Consensus       306 -------~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          306 -------EEIGRVQGHFGPLNTVAISPQGT-SYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             -------CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEEECH
T ss_pred             -------cchhheecccCcEEEEEECCCCC-EEEEEcCCCeEEEEECcc
Confidence                   22344568999999999999986 688999999999999864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.6e-38  Score=277.63  Aligned_cols=308  Identities=15%  Similarity=0.244  Sum_probs=231.4

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeC---CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC---CC
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSG---DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS---GK   87 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~---D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~   87 (352)
                      ...+++|.+.|++++|+|+.     ..++++++.   |++|++|++.++...    ......|...|.+++|+|+   ++
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~-----~~l~~~~s~~~~d~~v~iw~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~   81 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCS-----AKFVTMGNFARGTGVIQLYEIQHGDLK----LLREIEKAKPIKCGTFGATSLQQR   81 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTS-----SEEEEEEC--CCCEEEEEEEECSSSEE----EEEEEEESSCEEEEECTTCCTTTC
T ss_pred             hhhccCCCCceEEEEEcCCC-----ceEEEecCccCCCcEEEEEeCCCCccc----ceeeecccCcEEEEEEcCCCCCCc
Confidence            34567899999999999973     246667766   999999999876432    1222358889999999998   69


Q ss_pred             EEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEE------CCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec
Q 018675           88 LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW------NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG  161 (352)
Q Consensus        88 ~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~------~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  161 (352)
                      +|++|+.|+.+++|+..++. .+...+.+|...|.++.|      +|++++|++++.|++|++||+.....  .+..+..
T Consensus        82 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~  158 (357)
T 3i2n_A           82 YLATGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--PVANMEP  158 (357)
T ss_dssp             CEEEEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS--CSEEECC
T ss_pred             eEEEecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC--cceeccc
Confidence            99999999999999987654 245677899999999965      67899999999999999999976541  2233433


Q ss_pred             Cc----cCeeEEE----EcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcC---CCCEEE
Q 018675          162 HA----QDVKMVQ----WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA---KGDKLV  230 (352)
Q Consensus       162 h~----~~v~~~~----~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~---~~~~l~  230 (352)
                      |.    ..+.++.    |+|++.++++++.|+.|++|++....     ....     ..|...|.+++|+|   ++.+|+
T Consensus       159 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~-----~~~~~~v~~~~~~~~~~~~~~l~  228 (357)
T 3i2n_A          159 VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-----LRWE-----TNIKNGVCSLEFDRKDISMNKLV  228 (357)
T ss_dssp             CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-----EEEE-----EECSSCEEEEEESCSSSSCCEEE
T ss_pred             cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-----eeee-----cCCCCceEEEEcCCCCCCCCEEE
Confidence            33    3788888    67899999999999999999876532     1111     24678999999999   999999


Q ss_pred             EEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCCccccC----
Q 018675          231 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDG----  304 (352)
Q Consensus       231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~----  304 (352)
                      +++.||.|++||++......       .........|...+.++.|++++  ++++++.|+.+++|+.........    
T Consensus       229 ~~~~dg~i~i~d~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  301 (357)
T 3i2n_A          229 ATSLEGKFHVFDMRTQHPTK-------GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE  301 (357)
T ss_dssp             EEESTTEEEEEEEEEEETTT-------EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred             EECCCCeEEEEeCcCCCccc-------ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence            99999999999976432110       00001112467889999999976  699999999999998754221100    


Q ss_pred             ------cccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          305 ------PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       305 ------~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                            ......+....+|...|++++|+|+++.+++|++.||.|+||++.+
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             SCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             CCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence                  0011234556789999999999999976444899999999999975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-37  Score=266.16  Aligned_cols=288  Identities=23%  Similarity=0.299  Sum_probs=231.7

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      .....++.+|.+.|++++| |+      +.+|++++.||.|++|+..+....    .. ...|...|.+++|+|++++|+
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~------~~~l~s~~~dg~v~vw~~~~~~~~----~~-~~~~~~~v~~~~~~~~~~~l~   75 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VD------DSKVASVSRDGTVRLWSKDDQWLG----TV-VYTGQGFLNSVCYDSEKELLL   75 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EE------TTEEEEEETTSEEEEEEESSSEEE----EE-EEECSSCEEEEEEETTTTEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cC------CCEEEEEEcCCcEEEEECCCCEEE----EE-eecCCccEEEEEECCCCCEEE
Confidence            4677899999999999999 76      468999999999999999765322    11 234788999999999999999


Q ss_pred             EEeCCCcEEEEEccCCc-eeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEE
Q 018675           91 TASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV  169 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~  169 (352)
                      +++.|+.+++|+..... ......+.+|...|.++.|  ++++|++++.|+.|++||.  .   .....+..|...+.++
T Consensus        76 ~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~---~~~~~~~~~~~~v~~~  148 (313)
T 3odt_A           76 FGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--G---SLVYNLQAHNASVWDA  148 (313)
T ss_dssp             EEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--T---EEEEEEECCSSCEEEE
T ss_pred             EecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--C---cEEEecccCCCceeEE
Confidence            99999999999875432 2345667889999999999  5679999999999999992  2   3456677899999999


Q ss_pred             EEcC-CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccc
Q 018675          170 QWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM  248 (352)
Q Consensus       170 ~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~  248 (352)
                      .|+| ++..+++++.|+.|++|+..       .....+.   ..|...|.+++|+|++. +++++.||.|++||++..+ 
T Consensus       149 ~~~~~~~~~l~~~~~d~~i~i~d~~-------~~~~~~~---~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~-  216 (313)
T 3odt_A          149 KVVSFSENKFLTASADKTIKLWQND-------KVIKTFS---GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD-  216 (313)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEETT-------EEEEEEC---SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC-
T ss_pred             EEccCCCCEEEEEECCCCEEEEecC-------ceEEEEe---ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh-
Confidence            9988 88999999999999999732       1222221   23788999999999998 9999999999999975321 


Q ss_pred             ccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecC
Q 018675          249 QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP  328 (352)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  328 (352)
                                ....+. .|...+.++.+++++.+++++.|+.+++|+....         ........|...|++++|+|
T Consensus       217 ----------~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~---------~~~~~~~~~~~~i~~~~~~~  276 (313)
T 3odt_A          217 ----------VLRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG---------SLKQVITLPAISIWSVDCMS  276 (313)
T ss_dssp             ----------EEEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC---------CEEEEEECSSSCEEEEEECT
T ss_pred             ----------hhhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC---------ceeEEEeccCceEEEEEEcc
Confidence                      222232 3677899999999999999999999999965432         22344567888999999999


Q ss_pred             CCcceEEEecCCCeEEEEeeccC
Q 018675          329 GERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       329 ~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      +++  +++++.||.|++|++...
T Consensus       277 ~~~--~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          277 NGD--IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             TSC--EEEEETTSCEEEEESCGG
T ss_pred             CCC--EEEEeCCCcEEEEeCCCC
Confidence            986  457999999999998753

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.4e-37  Score=277.41  Aligned_cols=305  Identities=15%  Similarity=0.206  Sum_probs=231.2

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceee--eeeeeeecceecceEEEEECCC---
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFW--NCKAVLEEMHTRTVRSCAWSPS---   85 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~~---   85 (352)
                      ......+.+|.+.|++++|+|        ++|++|+.|++|++|++.+.....  .....+ ..|...|++++|+|+   
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~--------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~   76 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN--------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIER   76 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS--------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEET
T ss_pred             hhhhhhhhhhhcCeEEEEecC--------CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEeccccc
Confidence            355678899999999999988        389999999999999998764100  011112 358899999999999   


Q ss_pred             -C---CEEEEEeCCCcEEEEEccCCce---eeeEeeccc-----cCCeeEEEEC----CCCcE-EEEeeCCCcEEEEecC
Q 018675           86 -G---KLLATASFDATTCIWEDVGGDY---ECVATLEGH-----ENEVKSVSWN----ASGTL-LATCGRDKSVWIWEVM  148 (352)
Q Consensus        86 -~---~~l~s~~~d~~i~i~~~~~~~~---~~~~~~~~h-----~~~v~~v~~~----~~~~~-l~s~~~d~~v~vwd~~  148 (352)
                       +   ++|++++.|+.|++|+..++..   .....+..|     ...|.+++|+    |++++ |++++.|+.|++||+.
T Consensus        77 ~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~  156 (397)
T 1sq9_A           77 DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH  156 (397)
T ss_dssp             TTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred             CCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence             9   9999999999999999876531   114566777     5899999999    99999 9999999999999987


Q ss_pred             C------CCeeE--EEEEe-------ecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCC
Q 018675          149 P------GNEFE--CVSVL-------QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH  213 (352)
Q Consensus       149 ~------~~~~~--~~~~~-------~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h  213 (352)
                      .      .....  ....+       ..|...+.+++|+|++ .+++++.|+.|++|++...     .....+.. ..+|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-----~~~~~~~~-~~~h  229 (397)
T 1sq9_A          157 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-----RPLYNFES-QHSM  229 (397)
T ss_dssp             SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-----EEEEEEEC-CC--
T ss_pred             ccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-----ceeEEEec-cccc
Confidence            6      33221  11133       3478889999999999 9999999999999987642     23333321 1127


Q ss_pred             ---cccEEEEEEcCCCCEEEEEeCC---CcEEEEcCCccccccCCCCccceeeEEeec------------ccCcceEEEE
Q 018675          214 ---SSTIWALSFNAKGDKLVSCSDD---LTIKIWGADITRMQSGDGYASWRHLCTISG------------YHDRTIFSVH  275 (352)
Q Consensus       214 ---~~~i~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~i~~~~  275 (352)
                         ...|.+++|+|++.+|++++.|   |.|++||++..+           ....+..            .|...+.++.
T Consensus       230 ~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  298 (397)
T 1sq9_A          230 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-----------RIGSLSVPTHSSQASLGEFAHSSWVMSLS  298 (397)
T ss_dssp             -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-----------EEEEECBC--------CCBSBSSCEEEEE
T ss_pred             cccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc-----------ccceeccCcccccccccccccCCcEEEEE
Confidence               8899999999999999999999   999999986322           1122221            1677899999


Q ss_pred             ecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeeccc------cc---------------CcceeEEEecCCCc--
Q 018675          276 WSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEK------AH---------------DMDVNSVQWSPGER--  331 (352)
Q Consensus       276 ~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~------~h---------------~~~i~~~~~sp~~~--  331 (352)
                      |++++ ++++++.|+.+++|+......         +....      +|               ...|++++|+|+++  
T Consensus       299 ~~~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~  369 (397)
T 1sq9_A          299 FNDSGETLCSAGWDGKLRFWDVKTKER---------ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS  369 (397)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTTEE---------EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCCce---------eEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence            99865 899999999999997654321         12222      45               89999999999973  


Q ss_pred             -------ceEEEecCCCeEEEEeeccC
Q 018675          332 -------RLLASASDDGMIKIWELANT  351 (352)
Q Consensus       332 -------~~l~s~~~Dg~i~iw~~~~~  351 (352)
                             .+|++++.||.|++|++..+
T Consensus       370 ~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          370 GMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             STTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             cccccccceEEEecCCCcEEEEEcCCC
Confidence                   47889999999999999764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-38  Score=294.72  Aligned_cols=304  Identities=12%  Similarity=0.134  Sum_probs=210.5

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCcee----eee--eeeeecceecceEEEEECCCCCE
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRF----WNC--KAVLEEMHTRTVRSCAWSPSGKL   88 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~----~~~--~~~~~~~h~~~v~~~~~s~~~~~   88 (352)
                      .++.+|.+.|++++|+|.....+.+.+|||+|.|++|++|++..+...    ...  .......|...|++++|+|+ ..
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TT  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SE
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-Ce
Confidence            456788999999999996211122579999999999999998765311    000  00112357889999999986 48


Q ss_pred             EEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEE--EECCCC-cEEEEeeCCCcEEEEecCCCCeeEEEEEeecCcc-
Q 018675           89 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSV--SWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ-  164 (352)
Q Consensus        89 l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v--~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~-  164 (352)
                      |++|+.||+|++||..++. .+...+.+|.+.|+++  .|+|++ .+|+||+.|++|++||++....   ...+.+|.. 
T Consensus       280 lasgs~DgtV~lWD~~~~~-~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~---~~~~~~~~~~  355 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPE-VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT---TKTTVSRFRG  355 (524)
T ss_dssp             EEEEETTSEEEEEETTBCS-SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH---HCEEEEECSC
T ss_pred             EEEEeCCCEEEEEECCCCC-CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc---cccccccccc
Confidence            9999999999999987653 2345678999999999  568887 8999999999999999875432   223444543 


Q ss_pred             -CeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          165 -DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       165 -~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                       .+.+++|+|++..+++++.|+.|++|++....     +..++.    +|...|++|+|+|++++|++|+.||+|++|+.
T Consensus       356 ~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-----~~~~l~----gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          356 SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-----AVHPLV----SRETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             CSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-----CCEEEE----ECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             CcccceEeCCCcCeEEEeCCCCcEEEEECcccc-----cceeee----cCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence             47899999999999999999999999876532     222332    68999999999999999999999999999986


Q ss_pred             CccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeE
Q 018675          244 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS  323 (352)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  323 (352)
                      .......   +   +...  .......++++++++++.++....+-.+..|.          ..........+|...|++
T Consensus       427 ~~~~~~~---~---~~~~--~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~----------~~g~~~~~l~gh~~~V~~  488 (524)
T 2j04_B          427 ARRLLHG---I---KNSS--ATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLT----------VNDVSKAKIDAHGINITC  488 (524)
T ss_dssp             CSSTTTC---C-----------CCCCEEEECBCCSSSCEEEECCCCCCCC-----------------------CCCSCCC
T ss_pred             hHhhccc---c---ccCc--cceeeeEEEEeccCCCCCeEEccCCceecccc----------cCCcceeeecCCCceEEE
Confidence            4321110   0   0000  00011235677777766433222211111111          011233456789999999


Q ss_pred             EEecCCCc--ceEEEecCCCeEEEEeecc
Q 018675          324 VQWSPGER--RLLASASDDGMIKIWELAN  350 (352)
Q Consensus       324 ~~~sp~~~--~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ++|+|++.  .++|+|+.||+||||++..
T Consensus       489 Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          489 TKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             EEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             EECCCCCCccHHHHhhccCceEEEEEccc
Confidence            99999863  4789999999999999865

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.8e-37  Score=272.80  Aligned_cols=246  Identities=17%  Similarity=0.282  Sum_probs=195.4

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEE
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTC   99 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   99 (352)
                      |...|++++|+|+       ..|++|+.||+|+|||+.+++....... ....|...|++++|+|+|++|++|+.|++|+
T Consensus        81 ~~~~v~~~~~s~d-------~~l~~~s~dg~v~lWd~~~~~~~~~~~~-~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~  152 (344)
T 4gqb_B           81 TEAGVADLTWVGE-------RGILVASDSGAVELWELDENETLIVSKF-CKYEHDDIVSTVSVLSSGTQAVSGSKDICIK  152 (344)
T ss_dssp             ESSCEEEEEEETT-------TEEEEEETTSEEEEEEECTTSSCEEEEE-EEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cCCCEEEEEEeCC-------CeEEEEECCCEEEEEeccCCCceeEeec-cccCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence            5678999999996       3689999999999999987764433222 2246899999999999999999999999999


Q ss_pred             EEEccCCceeeeEeeccccCCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCC-CCE
Q 018675          100 IWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPT-MDV  177 (352)
Q Consensus       100 i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~  177 (352)
                      +||..++  .++..+.+|.+.|++++|+|++. +|++++.|++|++||++.++....+ ....|...+.+++|+|+ +.+
T Consensus       153 iwd~~~~--~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~  229 (344)
T 4gqb_B          153 VWDLAQQ--VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI-GCSAPGYLPTSLAWHPQQSEV  229 (344)
T ss_dssp             EEETTTT--EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC-C----CCCEEEEEECSSCTTE
T ss_pred             EEECCCC--cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee-ecceeeccceeeeecCCCCcc
Confidence            9998776  45778899999999999999874 7899999999999999766543221 12345557899999995 568


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEcCCccccccCCCCcc
Q 018675          178 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADITRMQSGDGYAS  256 (352)
Q Consensus       178 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  256 (352)
                      +++|+.|+.|++||+....     ++.++    .+|...|++++|+|++ .+|++|+.|++|+|||++..+.        
T Consensus       230 l~sg~~dg~v~~wd~~~~~-----~~~~~----~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~--------  292 (344)
T 4gqb_B          230 FVFGDENGTVSLVDTKSTS-----CVLSS----AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL--------  292 (344)
T ss_dssp             EEEEETTSEEEEEESCC-------CCEEE----ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE--------
T ss_pred             eEEeccCCcEEEEECCCCc-----EEEEE----cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE--------
Confidence            8999999999999876432     23333    3789999999999997 5799999999999999754321        


Q ss_pred             ceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccC
Q 018675          257 WRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESK  298 (352)
Q Consensus       257 ~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~  298 (352)
                          ..+ ..|...|.+++|+|++  ++++++.|++|++|....
T Consensus       293 ----~~~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          293 ----FRS-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             ----EEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             ----EEE-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence                122 2478889999999865  578999999999997643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.4e-37  Score=267.86  Aligned_cols=246  Identities=24%  Similarity=0.403  Sum_probs=206.8

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      ..+++||...|.+++|+|+      +++++|++.|++|++||+.+++....    + ..|...+.+++|+|++++|++|+
T Consensus        73 ~~~l~gh~~~v~~~~~~~~------~~~l~s~s~D~~i~lWd~~~~~~~~~----~-~~~~~~~~~~~~spdg~~l~~g~  141 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISHT------LPIAASSSLDAHIRLWDLENGKQIKS----I-DAGPVDAWTLAFSPDSQYLATGT  141 (321)
T ss_dssp             EEEECCCSSCEEEEEECSS------SSEEEEEETTSEEEEEETTTTEEEEE----E-ECCTTCCCCEEECTTSSEEEEEC
T ss_pred             eeeeccCCCCEEEEEECCC------CCEEEEEeCCCcEEEEECCCCCEEEE----E-eCCCccEEEEEECCCCCEEEEEc
Confidence            4468999999999999997      47999999999999999987754322    2 23667889999999999999999


Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                      .|+.+++|+..++.  ....+..|...|.+++|+|++++|++++.|++|++||+..+   +.+..+.+|...|.+++|+|
T Consensus       142 ~dg~v~i~~~~~~~--~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~sp  216 (321)
T 3ow8_A          142 HVGKVNIFGVESGK--KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG---KLLHTLEGHAMPIRSLTFSP  216 (321)
T ss_dssp             TTSEEEEEETTTCS--EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCCCEEEECT
T ss_pred             CCCcEEEEEcCCCc--eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEcccCCceeEEEEcC
Confidence            99999999987764  34566788889999999999999999999999999998755   35667889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCC
Q 018675          174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG  253 (352)
Q Consensus       174 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  253 (352)
                      ++.+|++++.|+.|++|++....     ....+    .+|...|.+++|+|++.+|++++.|++|++||++..       
T Consensus       217 d~~~l~s~s~dg~i~iwd~~~~~-----~~~~~----~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-------  280 (321)
T 3ow8_A          217 DSQLLVTASDDGYIKIYDVQHAN-----LAGTL----SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-------  280 (321)
T ss_dssp             TSCEEEEECTTSCEEEEETTTCC-----EEEEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------
T ss_pred             CCCEEEEEcCCCeEEEEECCCcc-----eeEEE----cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-------
Confidence            99999999999999999876432     22233    479999999999999999999999999999997532       


Q ss_pred             CccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEc
Q 018675          254 YASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE  296 (352)
Q Consensus       254 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~  296 (352)
                          .....+. .|...+.+++|++++ ++++++.|+.+++|+.
T Consensus       281 ----~~~~~~~-~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          281 ----TCVHTFF-DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             ----EEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             ----EEEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence                1222332 367789999999976 8999999999999964

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-37  Score=284.62  Aligned_cols=316  Identities=16%  Similarity=0.183  Sum_probs=224.0

Q ss_pred             eeeeee-cCCccceEEEEEcc-CCCCCCCccEEEEeeCCCeEEEEecCC---CceeeeeeeeeecceecceEEEEECCCC
Q 018675           12 REIQTL-EGHTDRVWSLAWKP-TAGVDGVAPVFASCSGDKTVRIWEQSA---SSRFWNCKAVLEEMHTRTVRSCAWSPSG   86 (352)
Q Consensus        12 ~~~~~~-~gH~~~V~~i~~~p-~~~~~~~~~~l~s~s~D~~v~~w~~~~---~~~~~~~~~~~~~~h~~~v~~~~~s~~~   86 (352)
                      ..+.++ ++|.+.|++++|+| +      +++|+||+.|++|++|++.+   +.. ..  ......|...|++++|+|++
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~------~~~l~s~s~dg~v~vwd~~~~~~~~~-~~--~~~~~~h~~~v~~~~~~~~~  123 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGE------TPYLITGSDQGVIKIWNLKEIIVGEV-YS--SSLTYDCSSTVTQITMIPNF  123 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSS------SCEEEEEETTSEEEEEEHHHHHTTCC-CS--CSEEEECSSCEEEEEECTTS
T ss_pred             eEEeeeccCCCCceEEEEECCCC------CCEEEEecCCceEEEeECcccccCcc-cc--eeeeccCCCCEEEEEEeCCC
Confidence            456777 89999999999999 5      57999999999999999865   221 11  11222488999999999999


Q ss_pred             CEEEEEeCCCcEEEEEcc---CCcee------eeEeec--c--ccCCeeEEE--ECCCCcEEEEeeCCCcEEEEecCCCC
Q 018675           87 KLLATASFDATTCIWEDV---GGDYE------CVATLE--G--HENEVKSVS--WNASGTLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        87 ~~l~s~~~d~~i~i~~~~---~~~~~------~~~~~~--~--h~~~v~~v~--~~~~~~~l~s~~~d~~v~vwd~~~~~  151 (352)
                      ++|++|+.|++|++||..   .++..      .+..+.  .  +...+.++.  +++++.+|++++.|++|++||+....
T Consensus       124 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  203 (437)
T 3gre_A          124 DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE  203 (437)
T ss_dssp             SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Confidence            999999999999999874   33211      111111  1  456677777  56889999999999999999997654


Q ss_pred             eeEEEEEeec--CccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc----CC
Q 018675          152 EFECVSVLQG--HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN----AK  225 (352)
Q Consensus       152 ~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~----~~  225 (352)
                         ++..+.+  |...|++++|+|++.+|++++.|+.|++|++...     .+...+.   .+|...|.+++|+    |+
T Consensus       204 ---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~---~~~~~~v~~~~~~~~~s~~  272 (437)
T 3gre_A          204 ---RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-----VLIRSWS---FGDHAPITHVEVCQFYGKN  272 (437)
T ss_dssp             ---EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-----EEEEEEB---CTTCEEEEEEEECTTTCTT
T ss_pred             ---eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-----cEEEEEe---cCCCCceEEEEeccccCCC
Confidence               3555666  8889999999999999999999999999987642     2333321   2567789999665    46


Q ss_pred             CCEEEEEeCCCcEEEEcCCccccc-cCCCCc------cceeeE------Eee-cccCcceEEEEecCCceEEecCCCCeE
Q 018675          226 GDKLVSCSDDLTIKIWGADITRMQ-SGDGYA------SWRHLC------TIS-GYHDRTIFSVHWSREGIIASGAADDSV  291 (352)
Q Consensus       226 ~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~------~~~~~~------~~~-~~~~~~i~~~~~~~~~~~~s~~~d~~v  291 (352)
                      +.+|++|+.||.|++||++..+.. ...+..      .+.+..      .+. ..|...+.+++++++.++++++.|+.+
T Consensus       273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i  352 (437)
T 3gre_A          273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSI  352 (437)
T ss_dssp             EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEE
T ss_pred             ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeE
Confidence            779999999999999998643211 000000      000000      001 125667888999966789999999999


Q ss_pred             EEEEccCCccccCccc----------------------------ceeeecccccCcceeEEEecCC-CcceEEEecCCCe
Q 018675          292 QFFVESKDDLIDGPSY----------------------------KMLLKKEKAHDMDVNSVQWSPG-ERRLLASASDDGM  342 (352)
Q Consensus       292 ~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~h~~~i~~~~~sp~-~~~~l~s~~~Dg~  342 (352)
                      ++|+............                            .........|...|++++|+++ +..+|+||+.||.
T Consensus       353 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~  432 (437)
T 3gre_A          353 VMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGL  432 (437)
T ss_dssp             EEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSC
T ss_pred             EEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCce
Confidence            9998754322110000                            0000112349999999999987 2458999999999


Q ss_pred             EEEEe
Q 018675          343 IKIWE  347 (352)
Q Consensus       343 i~iw~  347 (352)
                      |+||+
T Consensus       433 I~iw~  437 (437)
T 3gre_A          433 IGIFQ  437 (437)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99995

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.3e-37  Score=276.98  Aligned_cols=298  Identities=13%  Similarity=0.180  Sum_probs=223.9

Q ss_pred             cCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCc
Q 018675           18 EGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDAT   97 (352)
Q Consensus        18 ~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   97 (352)
                      .+| ..+....|+|+      +.+|++++.|+.|++|++.++..    .. ....|...|++++|+|++++|++|+.|+.
T Consensus        95 ~~~-~~~~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~----~~-~~~~h~~~v~~~~~~~~~~~l~s~s~d~~  162 (420)
T 3vl1_A           95 KRA-DYTAVDTAKLQ------MRRFILGTTEGDIKVLDSNFNLQ----RE-IDQAHVSEITKLKFFPSGEALISSSQDMQ  162 (420)
T ss_dssp             CSC-CEEEEEEECSS------SCEEEEEETTSCEEEECTTSCEE----EE-ETTSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ecC-CceEEEEEecC------CCEEEEEECCCCEEEEeCCCcce----ee-ecccccCccEEEEECCCCCEEEEEeCCCe
Confidence            344 33444466775      57899999999999999876532    11 22458899999999999999999999999


Q ss_pred             EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec---Cc-----------
Q 018675           98 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG---HA-----------  163 (352)
Q Consensus        98 i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~---h~-----------  163 (352)
                      |++||..+++  ....+.+|...|.+++|+|++.+|++++.|++|++||+..+..   +..+..   |.           
T Consensus       163 i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~  237 (420)
T 3vl1_A          163 LKIWSVKDGS--NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT---IHTFNRKENPHDGVNSIALFVG  237 (420)
T ss_dssp             EEEEETTTCC--CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE---EEEECBTTBTTCCEEEEEEEEC
T ss_pred             EEEEeCCCCc--CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce---eEEeecCCCCCCCccEEEEecC
Confidence            9999987663  4567789999999999999999999999999999999976543   333432   33           


Q ss_pred             ----------cCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-EEEEE
Q 018675          164 ----------QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSC  232 (352)
Q Consensus       164 ----------~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s~  232 (352)
                                ..+.+++|+|++.++++++.|+.|++|++....     ....+   ..+|...|.+++|+|++. +|++|
T Consensus       238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~---~~~~~~~v~~~~~~~~~~~~l~~g  309 (420)
T 3vl1_A          238 TDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE-----QTIQL---PSKFTCSCNSLTVDGNNANYIYAG  309 (420)
T ss_dssp             CCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC-----EEEEE---CCTTSSCEEEEEECSSCTTEEEEE
T ss_pred             CcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc-----eeEEc---ccccCCCceeEEEeCCCCCEEEEE
Confidence                      334445567889999999999999999876532     12222   236788999999999998 99999


Q ss_pred             eCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeee
Q 018675          233 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK  312 (352)
Q Consensus       233 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~  312 (352)
                      +.||.|++||++....          ....+...+...+..+.+.++.++++++.|+.+++|+.................
T Consensus       310 ~~dg~i~vwd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~  379 (420)
T 3vl1_A          310 YENGMLAQWDLRSPEC----------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPT  379 (420)
T ss_dssp             ETTSEEEEEETTCTTS----------CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCE
T ss_pred             eCCCeEEEEEcCCCcC----------chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCcc
Confidence            9999999999863211          123334446777888888777799999999999999865422111100001111


Q ss_pred             cccccCcceeEEEecCCCc---ceEEEecCCCeEEEEeeccC
Q 018675          313 KEKAHDMDVNSVQWSPGER---RLLASASDDGMIKIWELANT  351 (352)
Q Consensus       313 ~~~~h~~~i~~~~~sp~~~---~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      ...+|...|.+++|+|+++   .++ ++|.+|.+++|+++++
T Consensus       380 ~~~~~~~~v~~~~~s~~~~~~g~l~-a~g~~g~~~~~~~~~~  420 (420)
T 3vl1_A          380 FLVSNDDAVSQFCYVSDDESNGEVL-EVGKNNFCALYNLSNP  420 (420)
T ss_dssp             EECCSSCCCCEEEEECCSSSSCEEE-EEETTTEEEEEESCC-
T ss_pred             EEccCCcceEEEEEccCCCCcceEE-EEcCCceEEEEeccCC
Confidence            2457889999999999987   555 5667999999999864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.4e-37  Score=276.21  Aligned_cols=244  Identities=30%  Similarity=0.558  Sum_probs=205.4

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCC
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG  150 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~  150 (352)
                      ..|..+|++++|+|++++|++|+.|++|++||..+++  ....+.+|.+.|++++|+|++++|++|+.|++|++||+...
T Consensus       105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~--~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~  182 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF  182 (410)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence            4588999999999999999999999999999987764  45678899999999999999999999999999999998654


Q ss_pred             CeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE
Q 018675          151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV  230 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  230 (352)
                         .++..+.+|...|.+++|+|++.++++++.|+.|++|++...     .+..++    .+|...|.++.++|++.+|+
T Consensus       183 ---~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-----~~~~~~----~~h~~~v~~~~~~~~g~~l~  250 (410)
T 1vyh_C          183 ---ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-----YCVKTF----TGHREWVRMVRPNQDGTLIA  250 (410)
T ss_dssp             ---CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-----CEEEEE----ECCSSCEEEEEECTTSSEEE
T ss_pred             ---ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-----cEEEEE----eCCCccEEEEEECCCCCEEE
Confidence               356778899999999999999999999999999999987643     233443    36889999999999999999


Q ss_pred             EEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCC---------------------ceEEecCCCC
Q 018675          231 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE---------------------GIIASGAADD  289 (352)
Q Consensus       231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------------~~~~s~~~d~  289 (352)
                      +|+.|+.|++||++....           ...+ ..|...+.++.|+|+                     .++++++.|+
T Consensus       251 s~s~D~~v~vwd~~~~~~-----------~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~  318 (410)
T 1vyh_C          251 SCSNDQTVRVWVVATKEC-----------KAEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  318 (410)
T ss_dssp             EEETTSCEEEEETTTCCE-----------EEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             EEcCCCeEEEEECCCCce-----------eeEe-cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence            999999999999753221           1122 236677888888873                     4799999999


Q ss_pred             eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       290 ~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .+++|+....         ..+....+|...|++++|+|+++ +|+||+.||+|+|||+..
T Consensus       319 ~i~iwd~~~~---------~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          319 TIKMWDVSTG---------MCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             EEEEEETTTT---------EEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTT
T ss_pred             eEEEEECCCC---------ceEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Confidence            9999976432         23345578999999999999986 678999999999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-36  Score=263.16  Aligned_cols=263  Identities=32%  Similarity=0.571  Sum_probs=196.2

Q ss_pred             eeee-cC-CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCce---eeeeeeeeecceecceEEEEECCCCCE
Q 018675           14 IQTL-EG-HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSR---FWNCKAVLEEMHTRTVRSCAWSPSGKL   88 (352)
Q Consensus        14 ~~~~-~g-H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~---~~~~~~~~~~~h~~~v~~~~~s~~~~~   88 (352)
                      +..+ .+ |.+.|++++|+|+      +++|++|+.|++|++|+......   ...+... ...|...|++++|+|+|++
T Consensus        49 ~~~~~~~~h~~~v~~v~~sp~------~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~g~~  121 (330)
T 2hes_X           49 IDVLDETAHKKAIRSVAWRPH------TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI-IEGHENEVKGVAWSNDGYY  121 (330)
T ss_dssp             EEEECTTCCCSCEEEEEECTT------SSEEEEEETTSCEEEEEC-------CCCEEEEE-EC----CEEEEEECTTSCE
T ss_pred             EEEEecCCccCCEEEEEECCC------CCEEEEEeCCCcEEEEEcccCcCccccceeEEE-EcCCCCcEEEEEECCCCCE
Confidence            3445 44 9999999999997      57999999999999999853211   0111122 2458899999999999999


Q ss_pred             EEEEeCCCcEEEEEccCC--ceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCe
Q 018675           89 LATASFDATTCIWEDVGG--DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV  166 (352)
Q Consensus        89 l~s~~~d~~i~i~~~~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v  166 (352)
                      |++|+.|++|++||....  ...++..+.+|...|++++|+|++.+|++++.|++|++||+..+ ...++..+.+|...|
T Consensus       122 las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~-~~~~~~~~~~h~~~v  200 (330)
T 2hes_X          122 LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD-DWECVAVLNGHEGTV  200 (330)
T ss_dssp             EEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCE
T ss_pred             EEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-CeeEEEEccCCCCcE
Confidence            999999999999997432  23456778899999999999999999999999999999997643 335677888999999


Q ss_pred             eEEEEcCC--CCEEEEEeCCCcEEEEecCCCCCC---CceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          167 KMVQWHPT--MDVLFSCSYDNTIKVWWAEDTDSD---NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       167 ~~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iw  241 (352)
                      .+++|+|+  +..|++++.|+.|++|++......   .+.+...+   ...|...|.+++|++++ +|++++.||.|++|
T Consensus       201 ~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw  276 (330)
T 2hes_X          201 WSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL---PDVHKRQVYNVAWGFNG-LIASVGADGVLAVY  276 (330)
T ss_dssp             EEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC---CSCCSSCEEEEEECTTS-CEEEEETTSCEEEE
T ss_pred             EEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeec---ccccccceEEEEEcCCC-EEEEEeCCCEEEEE
Confidence            99999998  678999999999999987543211   11222222   22488999999999765 79999999999999


Q ss_pred             cCCccccccCCCCccceeeEEeecccCc-ceEEEEecC--C-ceEEecCCCCeEEEEEcc
Q 018675          242 GADITRMQSGDGYASWRHLCTISGYHDR-TIFSVHWSR--E-GIIASGAADDSVQFFVES  297 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~--~-~~~~s~~~d~~v~~~~~~  297 (352)
                      +....         .++........|.. .+.+++|++  + .+|++++.|+++++|+..
T Consensus       277 ~~~~~---------~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          277 EEVDG---------EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEETT---------EEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             EcCCC---------ceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence            86421         11222222223554 789999988  3 479999999999999653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-36  Score=271.54  Aligned_cols=300  Identities=20%  Similarity=0.360  Sum_probs=226.5

Q ss_pred             cCCccceEEEEEccCCCCCCCcc-EEEEeeCCCeEEEEec----CCCceeeee------eeeeec-----ceecceEEEE
Q 018675           18 EGHTDRVWSLAWKPTAGVDGVAP-VFASCSGDKTVRIWEQ----SASSRFWNC------KAVLEE-----MHTRTVRSCA   81 (352)
Q Consensus        18 ~gH~~~V~~i~~~p~~~~~~~~~-~l~s~s~D~~v~~w~~----~~~~~~~~~------~~~~~~-----~h~~~v~~~~   81 (352)
                      ..|.+.|++++|+|+      ++ +||+++.|+.|++|++    .++...+..      ...+..     .|...|++++
T Consensus        42 ~~~~~~v~~~~~s~~------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPL------DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA  115 (425)
T ss_dssp             EEECSCCSEEEECSS------CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred             eeccCceEEEEECCC------CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence            356699999999997      46 9999999999999999    766532221      111111     1577999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE-------
Q 018675           82 WSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE-------  154 (352)
Q Consensus        82 ~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~-------  154 (352)
                      |+|++++|++|+.|+.+++|+. ++  .....+.+|...|.+++|+|++++|++++.|+.|++||+..+....       
T Consensus       116 ~s~~~~~l~~~~~dg~i~i~~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  192 (425)
T 1r5m_A          116 WSHDGNSIVTGVENGELRLWNK-TG--ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKET  192 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEET-TS--CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred             EcCCCCEEEEEeCCCeEEEEeC-CC--CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence            9999999999999999999983 33  3466778899999999999999999999999999999986443211       


Q ss_pred             ----------------------------------------------EEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEE
Q 018675          155 ----------------------------------------------CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK  188 (352)
Q Consensus       155 ----------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~  188 (352)
                                                                    .+..+..|...+.+++|+|++.+|++++.|+.|+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  272 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR  272 (425)
T ss_dssp             -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence                                                          1123446788899999999999999999999999


Q ss_pred             EEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccC
Q 018675          189 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD  268 (352)
Q Consensus       189 iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (352)
                      +|++....     ....+    .+|...|.+++|+|++ ++++++.||.|++||++...           ....+. .+.
T Consensus       273 i~d~~~~~-----~~~~~----~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-----------~~~~~~-~~~  330 (425)
T 1r5m_A          273 IWHGGNGN-----SQNCF----YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT-----------LLALSI-VDG  330 (425)
T ss_dssp             EECSSSBS-----CSEEE----CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE-----------EEEEEE-CTT
T ss_pred             EEECCCCc-----cceEe----cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc-----------EeEecc-cCC
Confidence            99875432     12222    3578899999999999 99999999999999975321           222222 356


Q ss_pred             cceEEEEecCCc-eEEecCCCCeEEEEEccCCcccc-----------CcccceeeecccccCc--ceeEEEecCCCcceE
Q 018675          269 RTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID-----------GPSYKMLLKKEKAHDM--DVNSVQWSPGERRLL  334 (352)
Q Consensus       269 ~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~-----------~~~~~~~~~~~~~h~~--~i~~~~~sp~~~~~l  334 (352)
                      ..+.++.+++++ ++++++.|+.+++|+........           .......+....+|..  .|++++|+|+++ +|
T Consensus       331 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l  409 (425)
T 1r5m_A          331 VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN-KI  409 (425)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS-EE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc-eE
Confidence            789999999876 78999999999999765321000           0000113455677866  999999999986 67


Q ss_pred             EEecCCCeEEEEeec
Q 018675          335 ASASDDGMIKIWELA  349 (352)
Q Consensus       335 ~s~~~Dg~i~iw~~~  349 (352)
                      ++++.||.|++|+++
T Consensus       410 ~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          410 SVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEESSSCCEEEECC
T ss_pred             EEEecCceEEEEeec
Confidence            899999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-37  Score=282.03  Aligned_cols=299  Identities=20%  Similarity=0.346  Sum_probs=231.6

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEe----------eCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASC----------SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL   89 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~----------s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l   89 (352)
                      +...|++++|+|+.     ..+|+++          +.|++|++|++.+....   .......|...|++++|+|++++|
T Consensus        11 ~~~~v~~~~~sp~g-----~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l   82 (416)
T 2pm9_A           11 EFSRTATFAWSHDK-----IPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE---KPIASLQVDSKFNDLDWSHNNKII   82 (416)
T ss_dssp             EEEESCBCCBCSSS-----SCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC---SCSCCCCCSSCEEEEEECSSSSCE
T ss_pred             hhhhcceEeeCCCC-----CCEEEEEecCcccccccCCCCeEEEEEccCCCCC---cEEEEEecCCceEEEEECCCCCeE
Confidence            44678999999973     2489999          89999999998765421   011112478899999999999999


Q ss_pred             EEEeCCCcEEEEEccCC--ceeeeEeeccccCCeeEEEECCC-CcEEEEeeCCCcEEEEecCCCC------eeEEEEEee
Q 018675           90 ATASFDATTCIWEDVGG--DYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGN------EFECVSVLQ  160 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~--~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~vwd~~~~~------~~~~~~~~~  160 (352)
                      ++|+.|+.+++|+....  .......+.+|...|++++|+|+ +.+|++++.|++|++||+....      .........
T Consensus        83 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  162 (416)
T 2pm9_A           83 AGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM  162 (416)
T ss_dssp             EEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred             EEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc
Confidence            99999999999998651  12356778899999999999998 8899999999999999997654      222222346


Q ss_pred             cCccCeeEEEEcCC-CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeec--cCCCCcccEEEEEEcCCC-CEEEEEeCCC
Q 018675          161 GHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE--SNNGHSSTIWALSFNAKG-DKLVSCSDDL  236 (352)
Q Consensus       161 ~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~l~~~~~~-~~l~s~~~dg  236 (352)
                      .|...+.+++|+|+ +.++++++.|+.|++|++...     .....+..  ...+|...|.+++|+|++ .++++++.|+
T Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  237 (416)
T 2pm9_A          163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-----KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD  237 (416)
T ss_dssp             CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-----EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred             CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-----CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence            78889999999998 789999999999999987653     22222221  122347899999999997 6899999999


Q ss_pred             ---cEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC-C-ceEEecCCCCeEEEEEccCCccccCcccceee
Q 018675          237 ---TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-E-GIIASGAADDSVQFFVESKDDLIDGPSYKMLL  311 (352)
Q Consensus       237 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~  311 (352)
                         .|++||++....          ....+...|...+.+++|++ + .++++++.|+.+++|+....         ..+
T Consensus       238 ~~~~i~~~d~~~~~~----------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---------~~~  298 (416)
T 2pm9_A          238 NDPSILIWDLRNANT----------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---------EQL  298 (416)
T ss_dssp             SSCCCCEEETTSTTS----------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---------CEE
T ss_pred             CCceEEEEeCCCCCC----------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---------ccc
Confidence               999999864211          00111113667899999998 4 48999999999999965432         233


Q ss_pred             ecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          312 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       312 ~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ....+|...|++++|+|+++.+|++++.||.|+||++..
T Consensus       299 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          299 SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence            445689999999999999856889999999999999865

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.8e-36  Score=265.54  Aligned_cols=304  Identities=21%  Similarity=0.345  Sum_probs=210.1

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC--CCCEEEEE
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP--SGKLLATA   92 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~   92 (352)
                      ..+.||.+.|++++|+|+      +++|++++.|++|++|++.+..........+ ..|...|++++|+|  ++++|++|
T Consensus         5 ~~~~gH~~~v~~~~~~~~------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~   77 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFY------GRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASA   77 (351)
T ss_dssp             CEECCCSSCEEEEEECSS------SSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEE
T ss_pred             ccCcccccceeEEEEcCC------CCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEE
Confidence            356899999999999997      5799999999999999998654333333222 35889999999999  69999999


Q ss_pred             eCCCcEEEEEccCCce-------eeeEeeccccCCeeEEEECCC--CcEEEEeeCCCcEEEEecCCCCeeEEEE---E--
Q 018675           93 SFDATTCIWEDVGGDY-------ECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPGNEFECVS---V--  158 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~-------~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~---~--  158 (352)
                      +.|+.|++||...+..       .+...+.+|...|.+++|+|+  +.+|++++.|++|++||+..........   .  
T Consensus        78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  157 (351)
T 3f3f_A           78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK  157 (351)
T ss_dssp             ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred             cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence            9999999999876432       446677889999999999999  9999999999999999987554221111   0  


Q ss_pred             -----eecCccCeeEEEEcCC---CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC----
Q 018675          159 -----LQGHAQDVKMVQWHPT---MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG----  226 (352)
Q Consensus       159 -----~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~----  226 (352)
                           ...|...+.++.|+|+   +..+++++.++.+.+|+.....   .....    ...+|...|.+++|+|++    
T Consensus       158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~----~~~~h~~~i~~~~~~p~~~~~~  230 (351)
T 3f3f_A          158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK---LHVAA----KLPGHKSLIRSISWAPSIGRWY  230 (351)
T ss_dssp             SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC---EEEEE----ECCCCCSCEEEEEECCCSSCSS
T ss_pred             ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc---eeeee----ecCCCCcceeEEEECCCCCCcc
Confidence                 1257778999999997   8899999999999777543321   11222    234789999999999998    


Q ss_pred             CEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCc
Q 018675          227 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP  305 (352)
Q Consensus       227 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~  305 (352)
                      .+|++|+.||.|++||++.........    .        .............. ....+..++....+.    .+. ..
T Consensus       231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~  293 (351)
T 3f3f_A          231 QLIATGCKDGRIRIFKITEKLSPLASE----E--------SLTNSNMFDNSADVDMDAQGRSDSNTEEKA----ELQ-SN  293 (351)
T ss_dssp             EEEEEEETTSCEEEEEEEECC-------------------------------------------------------C-CS
T ss_pred             eEEEEEcCCCeEEEEeCCCCcCccccC----C--------cccceeccCCCcccccccccccccccceee----eec-cc
Confidence            899999999999999976321110000    0        00001111111111 122222222111110    001 11


Q ss_pred             ccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          306 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       306 ~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .....+....+|...|++++|+|+++ +|+|++.||.|+||++..
T Consensus       294 ~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          294 LQVELLSEHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             EEEEEEEEECTTSSCEEEEEECSSSC-CEEEEETTSCEEEEEECT
T ss_pred             ccccEEEEEecccccEEEEEEcCCCC-EEEEecCCCcEEEEecCc
Confidence            12234455678999999999999986 688999999999999975

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.4e-35  Score=269.47  Aligned_cols=283  Identities=23%  Similarity=0.358  Sum_probs=216.4

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE  102 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  102 (352)
                      .++.|+|++.       .+||+| .|++|+|||..+++....+   ....|...|++++|+|+|++|++|+.|++|++||
T Consensus       107 y~~~l~wS~~-------n~lAvg-ld~tV~lWd~~tg~~~~~~---~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd  175 (420)
T 4gga_A          107 YLNLVDWSSG-------NVLAVA-LDNSVYLWSASSGDILQLL---QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD  175 (420)
T ss_dssp             TCBCEEECTT-------SEEEEE-ETTEEEEEETTTCCEEEEE---ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cceeEEECCC-------CEEEEE-eCCEEEEEECCCCCEEEEE---EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEE
Confidence            4567899874       467766 5999999999887532211   1134677899999999999999999999999999


Q ss_pred             ccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEe
Q 018675          103 DVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS  182 (352)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  182 (352)
                      ..++  .++..+.+|...+.+++|+  +..|++|+.|+.+++||.....  ..+..+.+|...+..+.++|++.++++++
T Consensus       176 ~~~~--~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~--~~~~~~~~h~~~~~~~~~~~~g~~l~s~~  249 (420)
T 4gga_A          176 VQQQ--KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE--HHVATLSGHSQEVCGLRWAPDGRHLASGG  249 (420)
T ss_dssp             TTTT--EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS--CEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCC--cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc--eeeEEecccccceeeeeecCCCCeeeeee
Confidence            8776  4567788999999998875  5799999999999999986543  34567889999999999999999999999


Q ss_pred             CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-EEEE--EeCCCcEEEEcCCccccccCCCCcccee
Q 018675          183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVS--CSDDLTIKIWGADITRMQSGDGYASWRH  259 (352)
Q Consensus       183 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~  259 (352)
                      .|+.+++|+......... ...    ....|...|.+++|+|.+. ++++  |+.|++|++||+.....           
T Consensus       250 ~D~~v~i~~~~~~~~~~~-~~~----~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~-----------  313 (420)
T 4gga_A          250 NDNLVNVWPSAPGEGGWV-PLQ----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----------  313 (420)
T ss_dssp             TTSCEEEEESSCCSSCSC-CSE----EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE-----------
T ss_pred             ccccceEEeeccccccce-eee----eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc-----------
Confidence            999999998765432111 111    1236788999999999754 4444  45799999999763321           


Q ss_pred             eEEeecccCcceEEEEecCCc-eEE--ecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEE
Q 018675          260 LCTISGYHDRTIFSVHWSREG-IIA--SGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLAS  336 (352)
Q Consensus       260 ~~~~~~~~~~~i~~~~~~~~~-~~~--s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s  336 (352)
                      ...+.  ....+.++.+.+++ .++  +|..|+.|++|+....         ..+.++.+|.+.|++++|+|+++ +|+|
T Consensus       314 ~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---------~~v~~l~gH~~~V~~l~~spdg~-~l~S  381 (420)
T 4gga_A          314 LSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---------AKVAELKGHTSRVLSLTMSPDGA-TVAS  381 (420)
T ss_dssp             EEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSS-CEEE
T ss_pred             ceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCCC-EEEE
Confidence            11221  23456777777754 444  3457999999976432         23455679999999999999986 6889


Q ss_pred             ecCCCeEEEEeecc
Q 018675          337 ASDDGMIKIWELAN  350 (352)
Q Consensus       337 ~~~Dg~i~iw~~~~  350 (352)
                      ||.|++|+||++..
T Consensus       382 ~s~D~tvriWdv~~  395 (420)
T 4gga_A          382 AAADETLRLWRCFE  395 (420)
T ss_dssp             EETTTEEEEECCSC
T ss_pred             EecCCeEEEEECCC
Confidence            99999999999853

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.5e-37  Score=276.05  Aligned_cols=301  Identities=17%  Similarity=0.300  Sum_probs=229.1

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC-CCEEEEEeCCCc
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS-GKLLATASFDAT   97 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~   97 (352)
                      .|...|++++|+|+      +.+|++++.|+.|++|++............+ ..|...|++++|+|+ +++|++++.|+.
T Consensus        65 ~~~~~v~~~~~s~~------~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~  137 (416)
T 2pm9_A           65 QVDSKFNDLDWSHN------NKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGE  137 (416)
T ss_dssp             CCSSCEEEEEECSS------SSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSC
T ss_pred             ecCCceEEEEECCC------CCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCe
Confidence            58999999999997      4789999999999999987621111111122 458899999999998 899999999999


Q ss_pred             EEEEEccCCc------ee-eeEeeccccCCeeEEEECCC-CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecC------c
Q 018675           98 TCIWEDVGGD------YE-CVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH------A  163 (352)
Q Consensus        98 i~i~~~~~~~------~~-~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h------~  163 (352)
                      |++||..+..      .. ......+|...|.+++|+|+ +.+|++++.|+.|++||+....   .+..+..|      .
T Consensus       138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~  214 (416)
T 2pm9_A          138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK---EVIHLSYTSPNSGIK  214 (416)
T ss_dssp             EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE---EEEEECCCCCSSCCC
T ss_pred             EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC---cceEEeccccccccC
Confidence            9999987654      11 12234678999999999998 7899999999999999997653   34444444      6


Q ss_pred             cCeeEEEEcCCC-CEEEEEeCCC---cEEEEecCCCCCCCceeEeeeeccCC-CCcccEEEEEEcC-CCCEEEEEeCCCc
Q 018675          164 QDVKMVQWHPTM-DVLFSCSYDN---TIKVWWAEDTDSDNWHCVQTISESNN-GHSSTIWALSFNA-KGDKLVSCSDDLT  237 (352)
Q Consensus       164 ~~v~~~~~~~~~-~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~l~~~~-~~~~l~s~~~dg~  237 (352)
                      ..+.+++|+|++ .++++++.|+   .|++|++.....        ...... +|...|.+++|+| ++.+|++++.||.
T Consensus       215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~  286 (416)
T 2pm9_A          215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT--------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT  286 (416)
T ss_dssp             CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS--------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE
T ss_pred             CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC--------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC
Confidence            789999999997 6899999998   999998865321        111223 6889999999999 8999999999999


Q ss_pred             EEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCCccccCccc--------
Q 018675          238 IKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSY--------  307 (352)
Q Consensus       238 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~~~~--------  307 (352)
                      |++||++..+           ....+. .|...+.+++|++++  ++++++.|+.+++|+............        
T Consensus       287 v~~wd~~~~~-----------~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  354 (416)
T 2pm9_A          287 VLLWNPESAE-----------QLSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQES  354 (416)
T ss_dssp             EEEECSSSCC-----------EEEEEE-CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------
T ss_pred             EEEeeCCCCc-----------cceeec-CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCC
Confidence            9999975321           222232 366788999999975  899999999999998754322111000        


Q ss_pred             cee------------------eecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          308 KML------------------LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       308 ~~~------------------~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ...                  ......|...+++++|+|+++ +|++++.||+|+||++..
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          355 ETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-LVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             ------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-EECBCTTSSCBCCBCCCC
T ss_pred             cccccccccccccccccccccccCCccccCCccceEEeeCCe-EEEEeCCCCeEEEEEecc
Confidence            000                  011223778899999999986 788999999999999875

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-35  Score=261.79  Aligned_cols=266  Identities=31%  Similarity=0.574  Sum_probs=209.0

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCC
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDA   96 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~   96 (352)
                      ..+|.+.|++++|+|+      +.+|++|+.|+++++|+......  .+...+ ..|...|.+++|+|++++|++|+.|+
T Consensus        57 ~~~h~~~v~~~~~sp~------g~~l~s~s~D~~v~iw~~~~~~~--~~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~  127 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPC------GNYLASASFDATTCIWKKNQDDF--ECVTTL-EGHENEVKSVAWAPSGNLLATCSRDK  127 (345)
T ss_dssp             CSSCSSCEEEEEECTT------SSEEEEEETTSCEEEEEECCC-E--EEEEEE-CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccCCcEEEEEECCC------CCEEEEEECCCcEEEEEccCCCe--EEEEEc-cCCCCCceEEEEeCCCCEEEEEECCC
Confidence            3689999999999997      57999999999999999876531  112222 45889999999999999999999999


Q ss_pred             cEEEEEccCCc-eeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCC
Q 018675           97 TTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM  175 (352)
Q Consensus        97 ~i~i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  175 (352)
                      +|++||...+. ..++..+.+|...|.+++|+|++++|++++.|++|++||+... ...+...+.+|...|.+++|+|++
T Consensus       128 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~-~~~~~~~~~~h~~~v~~l~~sp~g  206 (345)
T 3fm0_A          128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED-DWVCCATLEGHESTVWSLAFDPSG  206 (345)
T ss_dssp             CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECTTS
T ss_pred             eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCC-CEEEEEEecCCCCceEEEEECCCC
Confidence            99999986543 3456678899999999999999999999999999999998654 334556788999999999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCCC----------CCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          176 DVLFSCSYDNTIKVWWAEDTDS----------DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       176 ~~l~s~~~d~~i~iw~~~~~~~----------~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      .+|++++.|+.|++|+......          ..+.++.++   ...|...|++++|+|++..|++++.|+.|++|+.+.
T Consensus       207 ~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          207 QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL---SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP  283 (345)
T ss_dssp             SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE---CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred             CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe---cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence            9999999999999998633211          112233222   224888999999999999999999999999998753


Q ss_pred             cccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccC
Q 018675          246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESK  298 (352)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~  298 (352)
                      .....   .............|...|.+++|+|++  ++++++.|+.+++|....
T Consensus       284 ~~~~~---~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          284 NSDPQ---QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             TSCTT---SCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             CCCcc---eeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence            21110   001111122223578889999999964  899999999999997643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.1e-35  Score=264.99  Aligned_cols=310  Identities=20%  Similarity=0.312  Sum_probs=228.2

Q ss_pred             eeeecCCccceEEEEEcc-CCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeee--ee------ecceecceEEEEECC
Q 018675           14 IQTLEGHTDRVWSLAWKP-TAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA--VL------EEMHTRTVRSCAWSP   84 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p-~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~--~~------~~~h~~~v~~~~~s~   84 (352)
                      ...+.+|.+.|++++|+| +      +++|++++.||+|++|++.+.........  ..      ...|...|.+++|+|
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  109 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVE------GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP  109 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTT------CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred             eeeeeccCCcEEEEEEecCC------CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence            456778999999999999 5      47999999999999999887643221110  00      023889999999999


Q ss_pred             -CCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCC---CcEEEEeeCCCcEEEEecCCCCeeEEEEEee
Q 018675           85 -SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS---GTLLATCGRDKSVWIWEVMPGNEFECVSVLQ  160 (352)
Q Consensus        85 -~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~  160 (352)
                       ++++|++++.|+.+++|+..++..  ...+. +...+.++.|++.   +.++++++.|+.|++||+..+.   .+..+.
T Consensus       110 ~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~---~~~~~~  183 (408)
T 4a11_B          110 HDTGMFTSSSFDKTLKVWDTNTLQT--ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS---CSHILQ  183 (408)
T ss_dssp             TCTTCEEEEETTSEEEEEETTTTEE--EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC---CCEEEC
T ss_pred             CCCcEEEEEeCCCeEEEeeCCCCcc--ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc---eeeeec
Confidence             778999999999999999877643  33333 6788999999884   4499999999999999997654   345677


Q ss_pred             cCccCeeEEEEcCCCC-EEEEEeCCCcEEEEecCCCCCCCce-------eEeeeeccCCCCcccEEEEEEcCCCCEEEEE
Q 018675          161 GHAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWH-------CVQTISESNNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       161 ~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~-------~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                      +|...|.+++|+|++. ++++++.|+.|++|++.........       ..........+|...|.+++|+|++.+|+++
T Consensus       184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  263 (408)
T 4a11_B          184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV  263 (408)
T ss_dssp             CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence            8999999999999988 5899999999999998654211000       0001111224788999999999999999999


Q ss_pred             eCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeee
Q 018675          233 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK  312 (352)
Q Consensus       233 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~  312 (352)
                      +.||.|++||++..+........    ..  ..................++.++.++.+++|+....         ..+.
T Consensus       264 ~~dg~i~vwd~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~  328 (408)
T 4a11_B          264 GTDNRMRLWNSSNGENTLVNYGK----VC--NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---------EQIT  328 (408)
T ss_dssp             ETTSCEEEEETTTCCBCCCCCCC----CC--CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---------CEEE
T ss_pred             cCCCeEEEEECCCCccceecccc----cc--ccccccceeEEecCCCceEEEEecCCEEEEEECcCC---------ccee
Confidence            99999999998643321100000    00  000111122233344567778888999999976432         2334


Q ss_pred             cccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          313 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       313 ~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      ...+|...|++++|+|+++ +|++++.||.|++|++...
T Consensus       329 ~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          329 MLKGHYKTVDCCVFQSNFQ-ELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             EECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEEECC-
T ss_pred             eeccCCCeEEEEEEcCCCC-EEEEECCCCeEEEEeCCCC
Confidence            5678999999999999986 6889999999999999753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-35  Score=264.78  Aligned_cols=264  Identities=24%  Similarity=0.406  Sum_probs=210.7

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC--CCEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS--GKLLA   90 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~   90 (352)
                      ++..+.+|.+.|++++|+|+      +++||+|+.|++|++|++.....  .....+ ..|...|++++|+|+  +++|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~------~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~-~~h~~~v~~~~~~~~~~~~~l~   73 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYY------GKRLATCSSDKTIKIFEVEGETH--KLIDTL-TGHEGPVWRVDWAHPKFGTILA   73 (379)
T ss_dssp             --CCEEECCCCEEEEEECSS------SSEEEEEETTSCEEEEEEETTEE--EEEEEE-CCCSSCEEEEEECCGGGCSEEE
T ss_pred             ccEEecCCcccEEEEEEcCC------CCEEEEEECCCcEEEEecCCCcc--eeeeEe-cCCCCcEEEEEeCCCCCCCEEE
Confidence            46678999999999999997      57999999999999999874321  112222 458899999999987  99999


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCC--CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM  168 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~  168 (352)
                      +|+.|+.|++||..++.......+..|...|.+++|+|+  +.+|++++.|++|++||+....... ...+.+|...+.+
T Consensus        74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~v~~  152 (379)
T 3jrp_A           74 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNS  152 (379)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC-EEEEECCTTCEEE
T ss_pred             EeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee-eEEecCCCCceEE
Confidence            999999999999988765567778889999999999999  9999999999999999997653322 3356789999999


Q ss_pred             EEEcC-------------CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC---CCEEEEE
Q 018675          169 VQWHP-------------TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK---GDKLVSC  232 (352)
Q Consensus       169 ~~~~~-------------~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~s~  232 (352)
                      ++|+|             ++..+++++.|+.|++|++..... .+....    ...+|...|.+++|+|+   +.+|+++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~----~~~~h~~~v~~~~~sp~~~~~~~l~s~  227 (379)
T 3jrp_A          153 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLES----TLEGHSDWVRDVAWSPTVLLRSYLASV  227 (379)
T ss_dssp             EEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-EEEEEE----EECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             EEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-ceeeEE----EEecccCcEeEEEECCCCCCCCeEEEE
Confidence            99999             689999999999999998765321 122222    23478899999999999   8999999


Q ss_pred             eCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeee
Q 018675          233 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK  312 (352)
Q Consensus       233 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~  312 (352)
                      +.||.|++||++.....                     .                                    .....
T Consensus       228 ~~dg~i~iwd~~~~~~~---------------------~------------------------------------~~~~~  250 (379)
T 3jrp_A          228 SQDRTCIIWTQDNEQGP---------------------W------------------------------------KKTLL  250 (379)
T ss_dssp             ETTSCEEEEEESSTTSC---------------------C------------------------------------EEEES
T ss_pred             eCCCEEEEEeCCCCCcc---------------------c------------------------------------eeeee
Confidence            99999999986421000                     0                                    00011


Q ss_pred             cccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          313 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       313 ~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ....|...|++++|+|+++ +|++++.||.|++|++.
T Consensus       251 ~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          251 KEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             SSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEEEE
T ss_pred             ccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEeCC
Confidence            2245778899999999986 67899999999999986

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-35  Score=266.29  Aligned_cols=288  Identities=24%  Similarity=0.370  Sum_probs=223.4

Q ss_pred             eeecCCccceE--EEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           15 QTLEGHTDRVW--SLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        15 ~~~~gH~~~V~--~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      ....+|.+.++  +++|++.        .+++++.|++|++|+..++...    ......|...|.+++|+|++++|++|
T Consensus        85 ~~~~~~~~~~~~~~~~~s~~--------~l~~~~~d~~v~lw~~~~~~~~----~~~~~~~~~~v~~v~~s~~~~~l~~~  152 (401)
T 4aez_A           85 LDAPGIIDDYYLNLLDWSNL--------NVVAVALERNVYVWNADSGSVS----ALAETDESTYVASVKWSHDGSFLSVG  152 (401)
T ss_dssp             EECTTCCCCTTCBCEEECTT--------SEEEEEETTEEEEEETTTCCEE----EEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             eeCCCCcCCceEEEEeecCC--------CEEEEECCCeEEEeeCCCCcEe----EeeecCCCCCEEEEEECCCCCEEEEE
Confidence            34457877644  4666653        4788899999999999876532    22333478899999999999999999


Q ss_pred             eCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEc
Q 018675           93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH  172 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~  172 (352)
                      +.|+.+++|+..+++  ....+.+|...|.+++|  +++.|++++.|+.|++||+....  .....+.+|...|.+++|+
T Consensus       153 ~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~  226 (401)
T 4aez_A          153 LGNGLVDIYDVESQT--KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN--HQIGTLQGHSSEVCGLAWR  226 (401)
T ss_dssp             ETTSCEEEEETTTCC--EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS--CEEEEEECCSSCEEEEEEC
T ss_pred             CCCCeEEEEECcCCe--EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc--ceeeEEcCCCCCeeEEEEc
Confidence            999999999987663  46677899999999999  45799999999999999997433  3456678899999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-EEEEEe--CCCcEEEEcCCccccc
Q 018675          173 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCS--DDLTIKIWGADITRMQ  249 (352)
Q Consensus       173 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s~~--~dg~i~iwd~~~~~~~  249 (352)
                      |++.++++++.|+.|++|++....     ....+    .+|...|.+++|+|++. ++++++  .|+.|++||++...  
T Consensus       227 ~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~----~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~--  295 (401)
T 4aez_A          227 SDGLQLASGGNDNVVQIWDARSSI-----PKFTK----TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA--  295 (401)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCSS-----EEEEE----CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC--
T ss_pred             CCCCEEEEEeCCCeEEEccCCCCC-----ccEEe----cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC--
Confidence            999999999999999999876531     22222    36888999999999765 555554  79999999975321  


Q ss_pred             cCCCCccceeeEEeecccCcceEEEEecCCc-eEEe--cCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEe
Q 018675          250 SGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIAS--GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW  326 (352)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s--~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  326 (352)
                               ....+.  +...+.++.|++++ .+++  |+.|+.+++|+......       .......+|...|++++|
T Consensus       296 ---------~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-------~~~~~~~~h~~~v~~~~~  357 (401)
T 4aez_A          296 ---------RVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-------TKQVDIPAHDTRVLYSAL  357 (401)
T ss_dssp             ---------EEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-------EEEEEEECCSSCCCEEEE
T ss_pred             ---------EEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-------eeEEEecCCCCCEEEEEE
Confidence                     122222  45678999999976 5555  66899999997643211       112234689999999999


Q ss_pred             cCCCcceEEEecCCCeEEEEeecc
Q 018675          327 SPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       327 sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +|+++ +|++++.||.|++|++..
T Consensus       358 s~dg~-~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          358 SPDGR-ILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             CTTSS-EEEEECTTSEEEEEECCC
T ss_pred             CCCCC-EEEEEeCCCcEEEEECCC
Confidence            99986 688999999999999865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=253.13  Aligned_cols=282  Identities=22%  Similarity=0.338  Sum_probs=214.3

Q ss_pred             eEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEc
Q 018675           24 VWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWED  103 (352)
Q Consensus        24 V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  103 (352)
                      +++|+|+|+       .+||+| .|++|+|||..+++.....   ....|...|++++|+|++++|++|+.|++|++|+.
T Consensus        28 ~~~l~WS~~-------~~lAvg-~D~tV~iWd~~tg~~~~~~---~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~   96 (318)
T 4ggc_A           28 LNLVDWSSG-------NVLAVA-LDNSVYLWSASSGDILQLL---QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV   96 (318)
T ss_dssp             CBCEEECTT-------SEEEEE-ETTEEEEEETTTCCEEEEE---ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ceEEEECCC-------CEEEEE-eCCEEEEEECCCCCEEEEE---EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeec
Confidence            578999985       366665 5999999999887543221   11347788999999999999999999999999998


Q ss_pred             cCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC
Q 018675          104 VGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY  183 (352)
Q Consensus       104 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  183 (352)
                      .++  +++..+.+|...+.++.+  ++..+++++.++.+++|+.....  ..+..+.+|...+..+.+++++.++++++.
T Consensus        97 ~~~--~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  170 (318)
T 4ggc_A           97 QQQ--KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE--HHVATLSGHSQEVCGLRWAPDGRHLASGGN  170 (318)
T ss_dssp             TTT--EEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS--CEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCc--eeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc--eeEEEEcCccCceEEEEEcCCCCEEEEEec
Confidence            876  456777899888877654  55799999999999999976543  345667889999999999999999999999


Q ss_pred             CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE---EEEeCCCcEEEEcCCccccccCCCCccceee
Q 018675          184 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL---VSCSDDLTIKIWGADITRMQSGDGYASWRHL  260 (352)
Q Consensus       184 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l---~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  260 (352)
                      |+.|++|++........     .......|...|.++.++|++..+   ++++.++.|++|+......           .
T Consensus       171 d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----------~  234 (318)
T 4ggc_A          171 DNLVNVWPSAPGEGGWV-----PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----------L  234 (318)
T ss_dssp             TSCEEEEESSCBTTBSC-----CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-----------E
T ss_pred             CcceeEEECCCCccccc-----ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-----------c
Confidence            99999999865432211     111123567889999999976543   4667899999998753221           1


Q ss_pred             EEeecccCcceEEEEecCCc-eE--EecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEe
Q 018675          261 CTISGYHDRTIFSVHWSREG-II--ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA  337 (352)
Q Consensus       261 ~~~~~~~~~~i~~~~~~~~~-~~--~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~  337 (352)
                      ..  ..+...+..+.+.+.+ .+  ++++.|+.+++|+....         ..+.++.+|...|++++|+|+++ +|+||
T Consensus       235 ~~--~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---------~~~~~l~gH~~~V~~l~~spdg~-~l~S~  302 (318)
T 4ggc_A          235 SA--VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---------AKVAELKGHTSRVLSLTMSPDGA-TVASA  302 (318)
T ss_dssp             EE--EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSS-CEEEE
T ss_pred             cc--ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCCC-EEEEE
Confidence            11  1234556777777754 33  34568999999976432         23455679999999999999986 68899


Q ss_pred             cCCCeEEEEeecc
Q 018675          338 SDDGMIKIWELAN  350 (352)
Q Consensus       338 ~~Dg~i~iw~~~~  350 (352)
                      |.||+|+||++..
T Consensus       303 s~D~~v~iWd~~~  315 (318)
T 4ggc_A          303 AADETLRLWRCFE  315 (318)
T ss_dssp             ETTTEEEEECCSC
T ss_pred             ecCCeEEEEECCC
Confidence            9999999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.5e-35  Score=258.65  Aligned_cols=251  Identities=21%  Similarity=0.355  Sum_probs=205.1

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      .+.++.+|...|.+++|+|+      +.++++++.|+.+++|++.+..........+ ..|...|.++.|++++. ++++
T Consensus        89 ~~~~~~~~~~~v~~~~~s~~------~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~  160 (340)
T 1got_B           89 KVHAIPLRSSWVMTCAYAPS------GNYVACGGLDNICSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDNQ-IVTS  160 (340)
T ss_dssp             EEEEEECSSSCEEEEEECTT------SSEEEEEETTCEEEEEETTTCSBSCEEEEEE-ECCSSCEEEEEEEETTE-EEEE
T ss_pred             cceEeecCCccEEEEEECCC------CCEEEEEeCCCeEEEEECccCCCcceeEEEe-cCCCccEEEEEECCCCc-EEEE
Confidence            45667899999999999997      5799999999999999987654222222222 35889999999998876 8899


Q ss_pred             eCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEc
Q 018675           93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWH  172 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~  172 (352)
                      +.|++|++||..++  .+...+.+|.+.|.+++|+|++.+|++|+.|++|++||+..+.   +...+.+|...|.+++|+
T Consensus       161 s~d~~i~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~---~~~~~~~h~~~v~~v~~~  235 (340)
T 1got_B          161 SGDTTCALWDIETG--QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM---CRQTFTGHESDINAICFF  235 (340)
T ss_dssp             ETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS---EEEEECCCSSCEEEEEEC
T ss_pred             ECCCcEEEEECCCC--cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe---eEEEEcCCcCCEEEEEEc
Confidence            99999999998776  4567788999999999999999999999999999999997654   456778899999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCC
Q 018675          173 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD  252 (352)
Q Consensus       173 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  252 (352)
                      |++.+|++++.|+.|++||+...     .....+.  ...+...|.+++|+|++.+|++|+.||.|++||+....     
T Consensus       236 p~~~~l~s~s~d~~v~iwd~~~~-----~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-----  303 (340)
T 1got_B          236 PNGNAFATGSDDATCRLFDLRAD-----QELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD-----  303 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTT-----EEEEEEC--CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----
T ss_pred             CCCCEEEEEcCCCcEEEEECCCC-----cEEEEEc--cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc-----
Confidence            99999999999999999987643     1222221  22344579999999999999999999999999975321     


Q ss_pred             CCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEE
Q 018675          253 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFV  295 (352)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~  295 (352)
                            ....+. .|...+.++.+++++ ++++++.|+.+++|+
T Consensus       304 ------~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          304 ------RAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ------EEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ------EeeEee-cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence                  222332 477889999999986 799999999999993

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.9e-36  Score=269.10  Aligned_cols=274  Identities=18%  Similarity=0.264  Sum_probs=188.8

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC------CCcEEEEEccCCce--eee
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF------DATTCIWEDVGGDY--ECV  111 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------d~~i~i~~~~~~~~--~~~  111 (352)
                      .++++++.+.....|++....         ...|++.|++++|+|||++||+|+.      |+.+++|+...+..  ...
T Consensus        17 ~~~~~~~g~~~~~~w~~p~~~---------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~   87 (357)
T 4g56_B           17 NLYFQSNGSSKGSAWGRPVTA---------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLC   87 (357)
T ss_dssp             --------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGC
T ss_pred             ceEEecCCCccccccCCCCCC---------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEe
Confidence            345666677888889875321         1348899999999999999999997      67899997654421  112


Q ss_pred             EeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEE-EEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          112 ATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC-VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW  190 (352)
Q Consensus       112 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw  190 (352)
                      ....+|...|.+++|+|++. +++++.|++|++||+..++.... .....+|...|++++|+|++++|++++.|+.|++|
T Consensus        88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            23456888999999999875 55688899999999875542211 12345789999999999999999999999999999


Q ss_pred             ecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCc
Q 018675          191 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR  269 (352)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (352)
                      ++...     .....+    .+|...|.+++|+|++. ++++++.||+|++||++..+.....          ....+..
T Consensus       167 d~~~~-----~~~~~~----~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~----------~~~~~~~  227 (357)
T 4g56_B          167 DLSQK-----AVLKSY----NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI----------DFCASDT  227 (357)
T ss_dssp             ETTTT-----EEEEEE----CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC----------CCTTCCS
T ss_pred             ECCCC-----cEEEEE----cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee----------eeccccc
Confidence            87543     233333    47899999999999875 7899999999999998643321100          0112455


Q ss_pred             ceEEEEecCC--ceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEe
Q 018675          270 TIFSVHWSRE--GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       270 ~i~~~~~~~~--~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      .+.+++|+|+  .++++++.|+.+++|+....         .......+|...|++++|+|++.++|+||+.||+|+|||
T Consensus       228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd  298 (357)
T 4g56_B          228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD  298 (357)
T ss_dssp             CEEEEEECTTSTTEEEEEESSSCEEEEESSCG---------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred             cccchhhhhcccceEEEeecccceeEEECCCC---------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence            6888999885  37889999999999976432         123446789999999999999877899999999999999


Q ss_pred             eccC
Q 018675          348 LANT  351 (352)
Q Consensus       348 ~~~~  351 (352)
                      +..+
T Consensus       299 ~~~~  302 (357)
T 4g56_B          299 ADFS  302 (357)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            8653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.1e-35  Score=264.99  Aligned_cols=292  Identities=12%  Similarity=0.091  Sum_probs=203.7

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCC-------eEEEEecCCCceee-----eeeeeeecceecceEEEEECCCCCEE
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDK-------TVRIWEQSASSRFW-----NCKAVLEEMHTRTVRSCAWSPSGKLL   89 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~-------~v~~w~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~s~~~~~l   89 (352)
                      -+|+|++|+|+      +++|++||.|.       .|++|++.......     ......-..|...|.+++++  ++.+
T Consensus        15 ~PV~sv~fs~d------g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~   86 (365)
T 4h5i_A           15 YPAYGAKFLNN------DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGII   86 (365)
T ss_dssp             SCEEEEEEEET------TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEE
T ss_pred             CCEEEEEEeCC------CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEE
Confidence            47999999997      57999998654       59999987553211     01111112356677777654  5566


Q ss_pred             EEEe-----------CCCcEEEEEccCCce--eeeEee-----ccccCCeeEEEECCCCcEEEE--eeCCCcEEEEecCC
Q 018675           90 ATAS-----------FDATTCIWEDVGGDY--ECVATL-----EGHENEVKSVSWNASGTLLAT--CGRDKSVWIWEVMP  149 (352)
Q Consensus        90 ~s~~-----------~d~~i~i~~~~~~~~--~~~~~~-----~~h~~~v~~v~~~~~~~~l~s--~~~d~~v~vwd~~~  149 (352)
                      ++|.           .|+.+++|+......  ......     ..+...+++++|+|+|+++++  ++.|++|++||+..
T Consensus        87 ~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~  166 (365)
T 4h5i_A           87 LVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD  166 (365)
T ss_dssp             EEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT
T ss_pred             EEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC
Confidence            6654           567899998654321  112111     233456899999999998764  45789999999876


Q ss_pred             CCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE
Q 018675          150 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL  229 (352)
Q Consensus       150 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  229 (352)
                      ..   ++..+. |...|.+++|+|+++++++++.++ +.+|+.....     ...  .....+|...|.+++|+|++.++
T Consensus       167 ~~---~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~-----~~~--~~~~~~~~~~v~~v~fspdg~~l  234 (365)
T 4h5i_A          167 LT---EKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGS-----CIA--RKTDFDKNWSLSKINFIADDTVL  234 (365)
T ss_dssp             TE---EEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCC-----EEE--EECCCCTTEEEEEEEEEETTEEE
T ss_pred             Cc---EEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCc-----cee--eeecCCCCCCEEEEEEcCCCCEE
Confidence            53   344443 677899999999999999998555 5566543321     111  11234688899999999999999


Q ss_pred             EEEeCCC----cEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccC
Q 018675          230 VSCSDDL----TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG  304 (352)
Q Consensus       230 ~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~  304 (352)
                      ++++.|+    .+++|++......       ......+ ..|...|.+++|+|++ ++++|+.|++|++|+....     
T Consensus       235 ~~~s~d~~~~~~i~~~~~~~~~~~-------~~~~~~~-~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~-----  301 (365)
T 4h5i_A          235 IAASLKKGKGIVLTKISIKSGNTS-------VLRSKQV-TNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL-----  301 (365)
T ss_dssp             EEEEESSSCCEEEEEEEEETTEEE-------EEEEEEE-ESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT-----
T ss_pred             EEEecCCcceeEEeecccccceec-------ceeeeee-cCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC-----
Confidence            9999887    5777875422110       0111122 2467789999999987 7899999999999976432     


Q ss_pred             cccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       305 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                         ..+.....+|...|++++||||++ +|||||.|++||||++..
T Consensus       302 ---~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          302 ---SMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             ---EEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCT
T ss_pred             ---cEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCC
Confidence               122223578999999999999996 689999999999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.6e-35  Score=287.08  Aligned_cols=296  Identities=20%  Similarity=0.296  Sum_probs=239.6

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      +.....+.+|.+.|++++|+|+      ++++|+++.||+|++|+..++.....    + ..|..+|++++|+|++++|+
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~------~~~la~~~~~g~v~iwd~~~~~~~~~----~-~~~~~~v~~~~~s~~~~~l~   71 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPT------EPWVLTTLYSGRVEIWNYETQVEVRS----I-QVTETPVRAGKFIARKNWII   71 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSS------SSEEEEEETTSEEEEEETTTTEEEEE----E-ECCSSCEEEEEEEGGGTEEE
T ss_pred             cccceeeecCCCceEEEEECCC------CCEEEEEeCCCEEEEEECCCCceEEE----E-ecCCCcEEEEEEeCCCCEEE
Confidence            4566788999999999999997      57999999999999999987643222    2 34889999999999999999


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      +|+.|+.|++|+..+++  ....+.+|.+.|++++|+|++.+|++++.|++|++||+..+.  .....+.+|...+.+++
T Consensus        72 ~~~~dg~i~vw~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~v~~~~  147 (814)
T 3mkq_A           72 VGSDDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--ALEQTFEGHEHFVMCVA  147 (814)
T ss_dssp             EEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS--EEEEEEECCSSCEEEEE
T ss_pred             EEeCCCeEEEEECCCCc--EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc--eEEEEEcCCCCcEEEEE
Confidence            99999999999987764  466778899999999999999999999999999999987543  34566778999999999


Q ss_pred             EcC-CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcC--CCCEEEEEeCCCcEEEEcCCccc
Q 018675          171 WHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA--KGDKLVSCSDDLTIKIWGADITR  247 (352)
Q Consensus       171 ~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~  247 (352)
                      |+| ++..+++++.|+.|++|++.....     ...+.   ..+...+.+++|+|  ++.+|++++.||.|++||++...
T Consensus       148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~-----~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  219 (814)
T 3mkq_A          148 FNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLT---TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS  219 (814)
T ss_dssp             EETTEEEEEEEEETTSEEEEEETTCSSC-----SEEEE---CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcc-----eeEEe---cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            999 788999999999999998754321     11121   23457899999999  99999999999999999875321


Q ss_pred             cccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEe
Q 018675          248 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW  326 (352)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  326 (352)
                                 ....+. .|...+.++.|++++ ++++++.|+.+++|+....         ........|...|.+++|
T Consensus       220 -----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~  278 (814)
T 3mkq_A          220 -----------CVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---------KVEKTLNVGLERSWCIAT  278 (814)
T ss_dssp             -----------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---------SEEEEECCSSSSEEEEEE
T ss_pred             -----------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------cEEEEeecCCCcEEEEEE
Confidence                       222222 366789999999976 7999999999999976432         223345678889999999


Q ss_pred             cCCCcceEEEecCCCeEEEEeecc
Q 018675          327 SPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       327 sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +|+++.++++++.|+.+.+|++..
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          279 HPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             CTTCGGGEEEEEETTEEEEEECSC
T ss_pred             ccCCCceEEEEEeCCCEEEEEcCC
Confidence            999877645566688888998754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1e-34  Score=296.74  Aligned_cols=309  Identities=23%  Similarity=0.445  Sum_probs=238.6

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      ....+.+|.+.|++++|+|+      ++++++|+.|++|++|+..++.....    + ..|...|.+++|+|++++|++|
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~------~~~l~s~~~d~~i~vw~~~~~~~~~~----~-~~h~~~v~~~~~s~~~~~l~s~  675 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQD------GQRIASCGADKTLQVFKAETGEKLLD----I-KAHEDEVLCCAFSSDDSYIATC  675 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTCCEEEE----E-CCCSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEecccccEEEEEECCC------CCEEEEEeCCCeEEEEECCCCCEEEE----e-ccCCCCEEEEEEecCCCEEEEE
Confidence            33467899999999999997      57999999999999999988754322    2 3588999999999999999999


Q ss_pred             eCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC--CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      +.|++|++||..++  .++..+.+|...|.+++|+|  ++.++++++.|++|++||+..+.   +...+.+|...|++++
T Consensus       676 ~~d~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~---~~~~~~~h~~~v~~~~  750 (1249)
T 3sfz_A          676 SADKKVKIWDSATG--KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE---CRNTMFGHTNSVNHCR  750 (1249)
T ss_dssp             ETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS---EEEEECCCSSCEEEEE
T ss_pred             eCCCeEEEEECCCC--ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc---hhheecCCCCCEEEEE
Confidence            99999999998876  35677889999999999999  55689999999999999997654   4567789999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCCCCc---------------------ee-----------------E--------e
Q 018675          171 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNW---------------------HC-----------------V--------Q  204 (352)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~---------------------~~-----------------~--------~  204 (352)
                      |+|++..+++++.|+.|++|++........                     .+                 +        .
T Consensus       751 ~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~  830 (1249)
T 3sfz_A          751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG  830 (1249)
T ss_dssp             ECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred             EecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence            999999999999999999998754210000                     00                 0        0


Q ss_pred             eeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEE
Q 018675          205 TISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIA  283 (352)
Q Consensus       205 ~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~  283 (352)
                      .+.....+|...|.+++|+|++.++++++.||.|++|+++...           ....+ ..|...+.++.|++++ .++
T Consensus       831 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~-~~h~~~v~~v~~spdg~~l~  898 (1249)
T 3sfz_A          831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-----------KVADC-RGHLSWVHGVMFSPDGSSFL  898 (1249)
T ss_dssp             EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-----------EEEEE-CCCSSCEEEEEECTTSSEEE
T ss_pred             ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-----------eeeec-CCCccceEEEEECCCCCEEE
Confidence            0000112678899999999999999999999999999875321           11222 2466778888888876 788


Q ss_pred             ecCCCCeEEEEEccCCcc------------------------------------------------------------c-
Q 018675          284 SGAADDSVQFFVESKDDL------------------------------------------------------------I-  302 (352)
Q Consensus       284 s~~~d~~v~~~~~~~~~~------------------------------------------------------------~-  302 (352)
                      +++.|+.+++|+......                                                            . 
T Consensus       899 s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~  978 (1249)
T 3sfz_A          899 TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF  978 (1249)
T ss_dssp             EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE
T ss_pred             EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEE
Confidence            888888888886421000                                                            0 


Q ss_pred             ---c------CcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          303 ---D------GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       303 ---~------~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                         +      ............+|...|++++|+|+++ +|++++.||.|++|++..
T Consensus       979 g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A          979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK-TLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp             EETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS-CEEEECSSSBEEEEETTT
T ss_pred             EcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCC
Confidence               0      0000112234468999999999999986 578999999999999865

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.4e-34  Score=263.38  Aligned_cols=288  Identities=24%  Similarity=0.409  Sum_probs=226.4

Q ss_pred             eeeeeecCCccce-EEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           12 REIQTLEGHTDRV-WSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        12 ~~~~~~~gH~~~V-~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      ....++.+|.+.| .++.+.+        .++++|+.|++|++|+..+++....    + ..|...|.+++|+|++ .++
T Consensus       112 ~~~~~l~~h~~~v~~~~~~~~--------~~l~sgs~dg~i~vwd~~~~~~~~~----~-~~h~~~V~~l~~~~~~-~l~  177 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQFED--------NYVITGADDKMIRVYDSINKKFLLQ----L-SGHDGGVWALKYAHGG-ILV  177 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEEET--------TEEEEEETTSCEEEEETTTTEEEEE----E-CCCSSCEEEEEECSTT-EEE
T ss_pred             cceEEEcCCCCCcEEEEEECC--------CEEEEEcCCCcEEEEECCCCcEEEE----E-eCCCcCEEEEEEcCCC-EEE
Confidence            3456889999885 6777643        5899999999999999987653222    2 3589999999999988 999


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEEC--CCCcEEEEeeCCCcEEEEecCCCCeeE--------------
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWN--ASGTLLATCGRDKSVWIWEVMPGNEFE--------------  154 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~~~l~s~~~d~~v~vwd~~~~~~~~--------------  154 (352)
                      +|+.|++|++||..++  .+...+.+|.+.|.+++|+  +++.++++++.|++|++||+.......              
T Consensus       178 s~s~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  255 (464)
T 3v7d_B          178 SGSTDRTVRVWDIKKG--CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT  255 (464)
T ss_dssp             EEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred             EEeCCCCEEEEECCCC--cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence            9999999999998776  4567788999999999998  577899999999999999987554221              


Q ss_pred             ------EEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE
Q 018675          155 ------CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK  228 (352)
Q Consensus       155 ------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~  228 (352)
                            ....+.+|...+.++  ++++.++++++.|+.|++|++...     .+...+    .+|...|.+++|+|++.+
T Consensus       256 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~-----~~~~~~----~~~~~~v~~~~~~~~~~~  324 (464)
T 3v7d_B          256 PEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM-----KCLYIL----SGHTDRIYSTIYDHERKR  324 (464)
T ss_dssp             GGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT-----EEEEEE----CCCSSCEEEEEEETTTTE
T ss_pred             cCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC-----cEEEEe----cCCCCCEEEEEEcCCCCE
Confidence                  245567888888776  567889999999999999987542     233333    368899999999999999


Q ss_pred             EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccc
Q 018675          229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYK  308 (352)
Q Consensus       229 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~  308 (352)
                      +++|+.||.|++||++..+           ....+. .|...+.++.++ +.++++++.|+.+++|+.....        
T Consensus       325 l~sg~~dg~i~vwd~~~~~-----------~~~~~~-~h~~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~--------  383 (464)
T 3v7d_B          325 CISASMDTTIRIWDLENGE-----------LMYTLQ-GHTALVGLLRLS-DKFLVSAAADGSIRGWDANDYS--------  383 (464)
T ss_dssp             EEEEETTSCEEEEETTTTE-----------EEEEEC-CCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCC--------
T ss_pred             EEEEeCCCcEEEEECCCCc-----------EEEEEe-CCCCcEEEEEEc-CCEEEEEeCCCcEEEEECCCCc--------
Confidence            9999999999999975321           222232 367788999987 5789999999999999765321        


Q ss_pred             eeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          309 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       309 ~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      ...  ...|...+..++|+|+++ ++++++ ||.|+|||+..+
T Consensus       384 ~~~--~~~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g  422 (464)
T 3v7d_B          384 RKF--SYHHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSG  422 (464)
T ss_dssp             EEE--EEECTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTC
T ss_pred             eee--eecCCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCC
Confidence            111  123566788889999886 677887 999999998754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.9e-34  Score=251.16  Aligned_cols=252  Identities=21%  Similarity=0.360  Sum_probs=199.8

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      .+.++.+|...|++++|+|+      +.+|+||+.|++|++||+.+++...    .+ ..|...|.+++|+|++++|++|
T Consensus        57 ~~~~~~~h~~~v~~~~~s~d------g~~l~s~s~D~~v~~wd~~~~~~~~----~~-~~h~~~v~~~~~~~~~~~l~s~  125 (319)
T 3frx_A           57 PVRSFKGHSHIVQDCTLTAD------GAYALSASWDKTLRLWDVATGETYQ----RF-VGHKSDVMSVDIDKKASMIISG  125 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTTEEEE----EE-ECCSSCEEEEEECTTSCEEEEE
T ss_pred             cceEEeCCcccEEEEEECCC------CCEEEEEeCCCEEEEEECCCCCeeE----EE-ccCCCcEEEEEEcCCCCEEEEE
Confidence            45678999999999999997      5799999999999999998775322    22 3588999999999999999999


Q ss_pred             eCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCC------CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCe
Q 018675           93 SFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS------GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV  166 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v  166 (352)
                      +.|++|++||...   .+...+.+|...|.++.|.|.      +..|++++.|++|++||+...   .....+.+|...|
T Consensus       126 s~D~~i~vwd~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~h~~~v  199 (319)
T 3frx_A          126 SRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHNSNI  199 (319)
T ss_dssp             ETTSCEEEEETTS---CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT---EEEEEECCCCSCE
T ss_pred             eCCCeEEEEECCC---CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc---hhheeecCCCCcE
Confidence            9999999999764   346677899999999999985      448999999999999998654   3456678999999


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          167 KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      .+++|+|++.+|++++.|+.|++|++...     .....+.     +...|.+++|+|++.+|++++.+ .+++|+++..
T Consensus       200 ~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-----~~~~~~~-----~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~  268 (319)
T 3frx_A          200 NTLTASPDGTLIASAGKDGEIMLWNLAAK-----KAMYTLS-----AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ  268 (319)
T ss_dssp             EEEEECTTSSEEEEEETTCEEEEEETTTT-----EEEEEEE-----CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCC-----cEEEEec-----CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence            99999999999999999999999987643     2333332     34679999999999999888755 5999987643


Q ss_pred             ccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEc
Q 018675          247 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE  296 (352)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~  296 (352)
                      .......    .........+...+.+++|+|++ ++++++.|+.+++|+.
T Consensus       269 ~~~~~~~----~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          269 YLVDDLR----PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             EEEEEEC----CCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             eeeeccC----ccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence            2110000    00000112245568899999986 8999999999999964

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.3e-34  Score=262.46  Aligned_cols=284  Identities=13%  Similarity=0.128  Sum_probs=217.2

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE  102 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  102 (352)
                      .+++++|+|+      +++|++++.|+++++|+..+...    ...+ ..| ..+....|+|++++|++|+.|+.|++|+
T Consensus        58 ~~~~~~~s~~------g~~l~~~~~d~~v~i~d~~~~~~----~~~~-~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd  125 (420)
T 3vl1_A           58 AGKGNTFEKV------GSHLYKARLDGHDFLFNTIIRDG----SKML-KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLD  125 (420)
T ss_dssp             CCTTCEEEEE------ETTEEEEEETTEEEEEECCSEET----TTTS-CSC-CEEEEEEECSSSCEEEEEETTSCEEEEC
T ss_pred             cccceeeeec------CCeEEEEEcCCcEEEEEecccce----eeEE-ecC-CceEEEEEecCCCEEEEEECCCCEEEEe
Confidence            3457899997      57899999999999999875422    1111 122 3445557899999999999999999999


Q ss_pred             ccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEe
Q 018675          103 DVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS  182 (352)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  182 (352)
                      ..++  .....+.+|.+.|++++|+|++++|++++.|++|++||+..+..   +..+.+|...|.+++|+|++.+|++++
T Consensus       126 ~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~~  200 (420)
T 3vl1_A          126 SNFN--LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN---PRTLIGHRATVTDIAIIDRGRNVLSAS  200 (420)
T ss_dssp             TTSC--EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC---CEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCc--ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC---ceEEcCCCCcEEEEEEcCCCCEEEEEc
Confidence            8765  34556679999999999999999999999999999999976543   456678999999999999999999999


Q ss_pred             CCCcEEEEecCCCCCCCceeEeeeeccCCCCc---------------------ccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHS---------------------STIWALSFNAKGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       183 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~---------------------~~i~~l~~~~~~~~l~s~~~dg~i~iw  241 (352)
                      .|+.|++|++...     .....+.. ...|.                     ..+.+++|+|++++|++++.||.|++|
T Consensus       201 ~d~~v~iwd~~~~-----~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  274 (420)
T 3vl1_A          201 LDGTIRLWECGTG-----TTIHTFNR-KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH  274 (420)
T ss_dssp             TTSCEEEEETTTT-----EEEEEECB-TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred             CCCcEEEeECCCC-----ceeEEeec-CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence            9999999987643     22333321 11233                     344455568899999999999999999


Q ss_pred             cCCccccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCCccccCcccceeeecccc-cC
Q 018675          242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA-HD  318 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~-h~  318 (352)
                      |++..+           ....+...+...+.+++|++++  ++++++.|+.+++|+.....        ..+....+ |.
T Consensus       275 d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--------~~~~~~~~~~~  335 (420)
T 3vl1_A          275 NVFSKE-----------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--------CPVGEFLINEG  335 (420)
T ss_dssp             ETTTCC-----------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------SCSEEEEESTT
T ss_pred             ECCCCc-----------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--------CchhhhhccCC
Confidence            975321           2223334467789999999976  79999999999999765421        11122233 67


Q ss_pred             cceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          319 MDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       319 ~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ..|+++.|+ +++ +|++++.||.|++|++..
T Consensus       336 ~~v~~~~~~-~~~-~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          336 TPINNVYFA-AGA-LFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             SCEEEEEEE-TTE-EEEEETTTEEEEEEEECC
T ss_pred             CCceEEEeC-CCC-EEEEecCCccEEEEeccC
Confidence            788888765 554 688999999999999865

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.7e-34  Score=252.20  Aligned_cols=286  Identities=19%  Similarity=0.263  Sum_probs=224.5

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEE
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTC   99 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   99 (352)
                      |.+.|.+++|+|+      +.+++.+..++.+.+|.......     ......|...|++++|+|++++|++++ |+.++
T Consensus         8 ~~~~v~~~~~s~d------g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~   75 (337)
T 1gxr_A            8 GSKPAYSFHVTAD------GQMQPVPFPPDALIGPGIPRHAR-----QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVK   75 (337)
T ss_dssp             EEEECCEEEECSS------SCEEECCCCTTSSSSTTCCSEEE-----EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEE
T ss_pred             cCCceeEEEECCC------CCEEEeecCCCcEeccccCCccc-----cceeccCCCceEEEEEecCCcEEEEcC-CCeEE
Confidence            5678999999997      57888887777776665433211     111235889999999999999999998 99999


Q ss_pred             EEEccCCce-eeeEeec--cccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC
Q 018675          100 IWEDVGGDY-ECVATLE--GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD  176 (352)
Q Consensus       100 i~~~~~~~~-~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  176 (352)
                      +|+..++.. .....+.  +|...|.+++|+|++++|++++.|+.|++||+.... ......+..|...+.+++|+|++.
T Consensus        76 iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~  154 (337)
T 1gxr_A           76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISPDSK  154 (337)
T ss_dssp             EEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS
T ss_pred             EEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC-cceeeecccCCCceEEEEECCCCC
Confidence            999865432 1222333  788999999999999999999999999999987553 234556778889999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCcc
Q 018675          177 VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYAS  256 (352)
Q Consensus       177 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  256 (352)
                      ++++++.|+.|++|++...     .....+    .+|...|.+++|+|++.+|++++.||.|++||++..+.        
T Consensus       155 ~l~~~~~dg~v~~~d~~~~-----~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--------  217 (337)
T 1gxr_A          155 VCFSCCSDGNIAVWDLHNQ-----TLVRQF----QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ--------  217 (337)
T ss_dssp             EEEEEETTSCEEEEETTTT-----EEEEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------
T ss_pred             EEEEEeCCCcEEEEeCCCC-----ceeeee----ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce--------
Confidence            9999999999999987543     223333    35888999999999999999999999999999763221        


Q ss_pred             ceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEE
Q 018675          257 WRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA  335 (352)
Q Consensus       257 ~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~  335 (352)
                         ...+  .+...+.++.+++++ ++++++.++.+++|+.....          ......|...|++++|+|+++ +|+
T Consensus       218 ---~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~-~l~  281 (337)
T 1gxr_A          218 ---LQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----------KYQLHLHESCVLSLKFAYCGK-WFV  281 (337)
T ss_dssp             ---EEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----------EEEECCCSSCEEEEEECTTSS-EEE
T ss_pred             ---Eeee--cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----------eEEEcCCccceeEEEECCCCC-EEE
Confidence               1112  245678899999876 78899999999999765421          123467899999999999986 678


Q ss_pred             EecCCCeEEEEeeccC
Q 018675          336 SASDDGMIKIWELANT  351 (352)
Q Consensus       336 s~~~Dg~i~iw~~~~~  351 (352)
                      +++.||.|++|++...
T Consensus       282 ~~~~dg~i~~~~~~~~  297 (337)
T 1gxr_A          282 STGKDNLLNAWRTPYG  297 (337)
T ss_dssp             EEETTSEEEEEETTTC
T ss_pred             EecCCCcEEEEECCCC
Confidence            9999999999998653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=9e-34  Score=258.64  Aligned_cols=291  Identities=26%  Similarity=0.423  Sum_probs=224.6

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..+....+|...|+|+.+.        ++++++|+.|++|++|+..+.+....    + ..|...|.+++|  ++++|++
T Consensus       124 ~~~~~~~~~~~~v~~~~~d--------~~~l~~g~~dg~i~iwd~~~~~~~~~----~-~~h~~~v~~l~~--~~~~l~s  188 (435)
T 1p22_A          124 QRIHCRSETSKGVYCLQYD--------DQKIVSGLRDNTIKIWDKNTLECKRI----L-TGHTGSVLCLQY--DERVIIT  188 (435)
T ss_dssp             CCEECCCSSCCCEEEEECC--------SSEEEEEESSSCEEEEESSSCCEEEE----E-CCCSSCEEEEEC--CSSEEEE
T ss_pred             eEEecccCCCCcEEEEEEC--------CCEEEEEeCCCeEEEEeCCCCeEEEE----E-cCCCCcEEEEEE--CCCEEEE
Confidence            3344456788899999873        36899999999999999987653222    2 358899999998  7899999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      |+.||+|++||..+++  ....+.+|...|.+++|++  ..+++|+.|++|++||+...........+.+|...|.+++|
T Consensus       189 g~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  264 (435)
T 1p22_A          189 GSSDSTVRVWDVNTGE--MLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF  264 (435)
T ss_dssp             EETTSCEEEEESSSCC--EEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred             EcCCCeEEEEECCCCc--EEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence            9999999999987764  4677889999999999974  59999999999999999876655555677889999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG  251 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (352)
                        ++..+++++.|+.|++|++...     .....+    .+|...|.++.++  +.++++|+.||.|++||++...    
T Consensus       265 --~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~----~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~----  327 (435)
T 1p22_A          265 --DDKYIVSASGDRTIKVWNTSTC-----EFVRTL----NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA----  327 (435)
T ss_dssp             --ETTEEEEEETTSEEEEEETTTC-----CEEEEE----ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC----
T ss_pred             --CCCEEEEEeCCCeEEEEECCcC-----cEEEEE----cCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCC----
Confidence              6779999999999999987643     233333    2688899999984  6799999999999999986321    


Q ss_pred             CCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCc
Q 018675          252 DGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER  331 (352)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  331 (352)
                             ....+. .|...+.++.+ .+.++++++.||.+++|+...............+....+|...|++++|  ++.
T Consensus       328 -------~~~~~~-~h~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~  396 (435)
T 1p22_A          328 -------CLRVLE-GHEELVRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF  396 (435)
T ss_dssp             -------EEEEEC-CCSSCEEEEEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSS
T ss_pred             -------EEEEEe-CCcCcEEEEEe-cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCC
Confidence                   122222 36778889988 5678999999999999976432111111111234456789999999999  444


Q ss_pred             ceEEEecCCCeEEEEeecc
Q 018675          332 RLLASASDDGMIKIWELAN  350 (352)
Q Consensus       332 ~~l~s~~~Dg~i~iw~~~~  350 (352)
                       .|++++.||+|++|++..
T Consensus       397 -~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          397 -QIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             -CEEECCSSSEEEEEC---
T ss_pred             -EEEEEeCCCEEEEEECCC
Confidence             578999999999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.9e-34  Score=271.57  Aligned_cols=304  Identities=18%  Similarity=0.308  Sum_probs=222.8

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceec---ceEEEEECCC-CC
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR---TVRSCAWSPS-GK   87 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~-~~   87 (352)
                      ..+..+.+|.+.|++++|+|+.     ..++++++.|++|++|+..+.+..    ..+ ..|..   .|.+++|+|+ ++
T Consensus       151 ~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~d~~v~vwd~~~~~~~----~~~-~~~~~~~~~v~~~~~~~~~~~  220 (615)
T 1pgu_A          151 NSLGEVSGHSQRINACHLKQSR-----PMRSMTVGDDGSVVFYQGPPFKFS----ASD-RTHHKQGSFVRDVEFSPDSGE  220 (615)
T ss_dssp             CEEEECCSCSSCEEEEEECSSS-----SCEEEEEETTTEEEEEETTTBEEE----EEE-CSSSCTTCCEEEEEECSTTCC
T ss_pred             CcceeeecCCccEEEEEECCCC-----CcEEEEEeCCCcEEEEeCCCccee----eee-cccCCCCceEEEEEECCCCCC
Confidence            3456788999999999999973     238999999999999998765432    222 34777   8999999999 99


Q ss_pred             EEEEEeCCCcEEEEEccCCceeeeEee-c---cccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCee----------
Q 018675           88 LLATASFDATTCIWEDVGGDYECVATL-E---GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF----------  153 (352)
Q Consensus        88 ~l~s~~~d~~i~i~~~~~~~~~~~~~~-~---~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~----------  153 (352)
                      +|++++.|+.+++||..+++  .+..+ .   +|...|.+++|+ ++.+|++++.|+.|++||+..+...          
T Consensus       221 ~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  297 (615)
T 1pgu_A          221 FVITVGSDRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL  297 (615)
T ss_dssp             EEEEEETTCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred             EEEEEeCCCeEEEEECCCCC--EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcc
Confidence            99999999999999987664  35555 5   899999999999 9999999999999999998644211          


Q ss_pred             --------------------------------EEEEEeecCccCeeEEEEcCC---------------------------
Q 018675          154 --------------------------------ECVSVLQGHAQDVKMVQWHPT---------------------------  174 (352)
Q Consensus       154 --------------------------------~~~~~~~~h~~~v~~~~~~~~---------------------------  174 (352)
                                                      ..+..+.+|...|.+++| |+                           
T Consensus       298 ~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~  376 (615)
T 1pgu_A          298 GNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIV  376 (615)
T ss_dssp             GGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEE
T ss_pred             cCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceE
Confidence                                            112233344444444444 32                           


Q ss_pred             ------CCEEEEEeCCCcEEEEecCCCCC---------------------------------------------------
Q 018675          175 ------MDVLFSCSYDNTIKVWWAEDTDS---------------------------------------------------  197 (352)
Q Consensus       175 ------~~~l~s~~~d~~i~iw~~~~~~~---------------------------------------------------  197 (352)
                            +..+++++.|+.+++|++.....                                                   
T Consensus       377 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (615)
T 1pgu_A          377 SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQ  456 (615)
T ss_dssp             EEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECS
T ss_pred             EEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcC
Confidence                  44555666666666665432100                                                   


Q ss_pred             ---------CCceeEe-----eee-ccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEE
Q 018675          198 ---------DNWHCVQ-----TIS-ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCT  262 (352)
Q Consensus       198 ---------~~~~~~~-----~~~-~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  262 (352)
                               +....+.     .+. ....+|...|.+++|+|++++|++++.||.|++||++..+.           ...
T Consensus       457 ~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----------~~~  525 (615)
T 1pgu_A          457 NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----------KTS  525 (615)
T ss_dssp             SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------EEC
T ss_pred             CEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----------eeE
Confidence                     0000000     000 23456889999999999999999999999999999853321           222


Q ss_pred             eecccCcceEEEEecC----------Cc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCc
Q 018675          263 ISGYHDRTIFSVHWSR----------EG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER  331 (352)
Q Consensus       263 ~~~~~~~~i~~~~~~~----------~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  331 (352)
                      +...|...+.+++|+|          ++ ++++++.|+.+++|+.....        ..+....+|...|++++|+|+++
T Consensus       526 ~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~h~~~v~~l~~s~~~~  597 (615)
T 1pgu_A          526 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM--------KIIKALNAHKDGVNNLLWETPST  597 (615)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT--------CCEEETTSSTTCEEEEEEEETTE
T ss_pred             eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc--------eechhhhcCccceEEEEEcCCCC
Confidence            3333778899999998          54 89999999999999765321        23345678999999999999986


Q ss_pred             ceEEEecCCCeEEEEeecc
Q 018675          332 RLLASASDDGMIKIWELAN  350 (352)
Q Consensus       332 ~~l~s~~~Dg~i~iw~~~~  350 (352)
                        |++++.||+|++|++..
T Consensus       598 --l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          598 --LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             --EEEEETTSCEEEEEEC-
T ss_pred             --eEEecCCceEEEEeeec
Confidence              77999999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.1e-34  Score=262.03  Aligned_cols=300  Identities=15%  Similarity=0.292  Sum_probs=212.9

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCce-------eeeeeeeeeccee------------cceEE
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSR-------FWNCKAVLEEMHT------------RTVRS   79 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~-------~~~~~~~~~~~h~------------~~v~~   79 (352)
                      .|.+.|++++|+|+      +.+||+|+.||.|+||++.+...       .+.....+ ..|.            ..|++
T Consensus        26 ~~~~~V~~v~~s~~------g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~   98 (447)
T 3dw8_B           26 AEADIISTVEFNHS------GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINK   98 (447)
T ss_dssp             CGGGSEEEEEECSS------SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCE
T ss_pred             cccCcEEEEEECCC------CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEE
Confidence            36899999999997      57999999999999999876541       11112222 3466            78999


Q ss_pred             EEECCCC--CEEEEEeCCCcEEEEEccCCcee-------------------------------------ee-EeeccccC
Q 018675           80 CAWSPSG--KLLATASFDATTCIWEDVGGDYE-------------------------------------CV-ATLEGHEN  119 (352)
Q Consensus        80 ~~~s~~~--~~l~s~~~d~~i~i~~~~~~~~~-------------------------------------~~-~~~~~h~~  119 (352)
                      ++|+|++  ..|++++.|++|++|+...+...                                     +. ....+|..
T Consensus        99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  178 (447)
T 3dw8_B           99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY  178 (447)
T ss_dssp             EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred             EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence            9999998  89999999999999997643211                                     01 11367999


Q ss_pred             CeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEE-------EeecCccCeeEEEEcCCC-CEEEEEeCCCcEEEEe
Q 018675          120 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS-------VLQGHAQDVKMVQWHPTM-DVLFSCSYDNTIKVWW  191 (352)
Q Consensus       120 ~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~  191 (352)
                      .|++++|+|++++|++| .|++|++||+....  ..+.       .+.+|...|.+++|+|++ .++++++.|+.|++|+
T Consensus       179 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  255 (447)
T 3dw8_B          179 HINSISINSDYETYLSA-DDLRINLWHLEITD--RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD  255 (447)
T ss_dssp             CCCEEEECTTSSEEEEE-CSSEEEEEETTEEE--EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCC--ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence            99999999999999998 89999999986322  2222       245788999999999998 8999999999999999


Q ss_pred             cCCCCCCCceeEeeeeccCCCCc------------ccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc-cccccCCCCccce
Q 018675          192 AEDTDSDNWHCVQTISESNNGHS------------STIWALSFNAKGDKLVSCSDDLTIKIWGADI-TRMQSGDGYASWR  258 (352)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~------------~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~  258 (352)
                      +........ ....+    .+|.            ..|.+++|+|++++|++++. +.|++||++. .+..         
T Consensus       256 ~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~---------  320 (447)
T 3dw8_B          256 MRASALCDR-HSKLF----EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV---------  320 (447)
T ss_dssp             TTTCSSSCT-TCEEE----CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS---------
T ss_pred             CcCCccccc-eeeEe----ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc---------
Confidence            865431100 01112    1343            38999999999999999999 9999999864 2111         


Q ss_pred             eeEEeecccC------------c---ceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcc----------------
Q 018675          259 HLCTISGYHD------------R---TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPS----------------  306 (352)
Q Consensus       259 ~~~~~~~~~~------------~---~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~----------------  306 (352)
                        ..+.. |.            .   .++.++|++++ ++++++.|+.+++|+........-..                
T Consensus       321 --~~~~~-~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (447)
T 3dw8_B          321 --ETYQV-HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKV  397 (447)
T ss_dssp             --CCEES-CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCE
T ss_pred             --ceeec-cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccc
Confidence              01111 11            1   13347888876 79999999999999876543211000                


Q ss_pred             -------cceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          307 -------YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       307 -------~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                             ...+......+...|.+++|+|++. +||+++.|+ +.+|+-
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          398 CASGKRKKDEISVDSLDFNKKILHTAWHPKEN-IIAVATTNN-LYIFQD  444 (447)
T ss_dssp             ECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS-EEEEECSSC-EEEEEC
T ss_pred             cccCCcccccccccccccCCceeEEEECCCCC-EEEEEecce-eeeecc
Confidence                   0000011224567899999999986 678887776 777764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2e-33  Score=248.35  Aligned_cols=246  Identities=20%  Similarity=0.313  Sum_probs=195.0

Q ss_pred             cceecceEEEEE-----CC-CCCEEEEEeCCCcEEEEEccCCc-----eeeeEeeccccCCeeEEEECCCCcEEEEeeCC
Q 018675           71 EMHTRTVRSCAW-----SP-SGKLLATASFDATTCIWEDVGGD-----YECVATLEGHENEVKSVSWNASGTLLATCGRD  139 (352)
Q Consensus        71 ~~h~~~v~~~~~-----s~-~~~~l~s~~~d~~i~i~~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d  139 (352)
                      ..|...|++++|     ++ ++++|++|+.|++|++|+....+     ..+...+.+|...|.+++|+|++.++++++.|
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D   97 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD   97 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT
T ss_pred             ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC
Confidence            459999999999     76 89999999999999999975432     23456788999999999999999999999999


Q ss_pred             CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEE
Q 018675          140 KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA  219 (352)
Q Consensus       140 ~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  219 (352)
                      ++|++||+..+.   ++..+.+|...|.+++|+|++.+|++++.|+.|++|++...      +.... ....+|...|.+
T Consensus        98 ~~v~lwd~~~~~---~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~------~~~~~-~~~~~~~~~v~~  167 (343)
T 2xzm_R           98 KTLRLWDLRTGT---TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE------CKFSS-AEKENHSDWVSC  167 (343)
T ss_dssp             SEEEEEETTSSC---EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC------EEEEC-CTTTSCSSCEEE
T ss_pred             CcEEEEECCCCc---EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC------ceeee-ecccCCCceeee
Confidence            999999997654   45667899999999999999999999999999999987531      11111 223468899999


Q ss_pred             EEEcCCC----------CEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCC
Q 018675          220 LSFNAKG----------DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAAD  288 (352)
Q Consensus       220 l~~~~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d  288 (352)
                      ++|+|++          .+|++++.||.|++||.+.            .....+ ..|...+.+++|++++ ++++++.|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------------~~~~~~-~~h~~~v~~~~~s~~g~~l~sgs~d  234 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------------QIRYTF-KAHESNVNHLSISPNGKYIATGGKD  234 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------------EEEEEE-ECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------------ceeEEE-cCccccceEEEECCCCCEEEEEcCC
Confidence            9999987          7899999999999998431            111222 2467789999999976 89999999


Q ss_pred             CeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          289 DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       289 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +.+++|+......        .... ..+...|++++|+|+++ ++ +++.|+.|++|++..
T Consensus       235 g~v~iwd~~~~~~--------~~~~-~~~~~~v~~v~~sp~~~-~l-a~~~d~~v~iw~~~~  285 (343)
T 2xzm_R          235 KKLLIWDILNLTY--------PQRE-FDAGSTINQIAFNPKLQ-WV-AVGTDQGVKIFNLMT  285 (343)
T ss_dssp             CEEEEEESSCCSS--------CSEE-EECSSCEEEEEECSSSC-EE-EEEESSCEEEEESSS
T ss_pred             CeEEEEECCCCcc--------ccee-ecCCCcEEEEEECCCCC-EE-EEECCCCEEEEEeCC
Confidence            9999997632111        0111 12445699999999975 55 466688999999854

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.6e-34  Score=250.65  Aligned_cols=290  Identities=9%  Similarity=0.044  Sum_probs=220.4

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCC-EEEEE
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK-LLATA   92 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~   92 (352)
                      +....+|.+.|++++|+|+      +++|++++.|++|++|++.+.........  ...|...|++++|+|+++ +|++|
T Consensus         4 ~~~~~~h~~~v~~~~~s~~------~~~l~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~   75 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPS------KSLLLITSWDGSLTVYKFDIQAKNVDLLQ--SLRYKHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGG------GTEEEEEETTSEEEEEEEETTTTEEEEEE--EEECSSCEEEEEEEESSSEEEEEE
T ss_pred             eecccCCCCcEEEEEEcCC------CCEEEEEcCCCeEEEEEeCCCCcccccee--eeecCCceEEEEECCCCCcEEEEE
Confidence            3445689999999999997      57999999999999999877652111121  135889999999999999 99999


Q ss_pred             eCCCcEEEEEc-cCCceeeeEeecc--ccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe------eEEEEEeecCc
Q 018675           93 SFDATTCIWED-VGGDYECVATLEG--HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE------FECVSVLQGHA  163 (352)
Q Consensus        93 ~~d~~i~i~~~-~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~------~~~~~~~~~h~  163 (352)
                      +.|+.|++|+. .++.   ...+.+  |...|.+++|+| +..|++++.|+.|++||+.....      ..++..+. |.
T Consensus        76 ~~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~  150 (342)
T 1yfq_A           76 TVQGEILKVDLIGSPS---FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VK  150 (342)
T ss_dssp             ETTSCEEEECSSSSSS---EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SC
T ss_pred             cCCCeEEEEEeccCCc---eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eC
Confidence            99999999998 7654   356677  999999999999 99999999999999999864000      11222333 77


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEecCC-CCCCCceeEeeeeccCCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 018675          164 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAED-TDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       164 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~s~~~dg~i~iw  241 (352)
                      ..+.+++|+|++  +++++.|+.|++|++.. ... ..   ..   ....|...|.+++|+| ++.++++++.||.|++|
T Consensus       151 ~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~-~~---~~---~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~  221 (342)
T 1yfq_A          151 NKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD-NG---TI---EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             CCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC-CC---EE---EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred             CceEEEEecCCc--EEEEeCCCeEEEEECCccccc-cc---ee---eecCCCCceeEEEECCCCCCEEEEEecCCcEEEE
Confidence            889999999886  89999999999999865 221 11   11   1125778899999999 99999999999999999


Q ss_pred             cCCccccccCCCCccceeeEEeecc--------cCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeee
Q 018675          242 GADITRMQSGDGYASWRHLCTISGY--------HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLK  312 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~  312 (352)
                      +++......     .......+...        +...+.+++|++++ ++++++.|+.+++|+....         ..+.
T Consensus       222 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------~~~~  287 (342)
T 1yfq_A          222 FFDDQGDDY-----NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---------KKIK  287 (342)
T ss_dssp             ECCTTCCST-----TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---------EEEE
T ss_pred             EEcCCCccc-----ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---------hHhh
Confidence            886430000     00111112211        23479999999865 7999999999999976432         2334


Q ss_pred             ccccc-CcceeEEEecCCCcceEEEecCCCe
Q 018675          313 KEKAH-DMDVNSVQWSPGERRLLASASDDGM  342 (352)
Q Consensus       313 ~~~~h-~~~i~~~~~sp~~~~~l~s~~~Dg~  342 (352)
                      ...+| ...|++++  |+++ +|++++.||+
T Consensus       288 ~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~  315 (342)
T 1yfq_A          288 NFAKFNEDSVVKIA--CSDN-ILCLATSDDT  315 (342)
T ss_dssp             ECCCCSSSEEEEEE--ECSS-EEEEEEECTH
T ss_pred             hhhcccCCCceEec--CCCC-eEEEEecCCc
Confidence            46677 99999999  8876 6889999998

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-34  Score=282.49  Aligned_cols=322  Identities=12%  Similarity=0.148  Sum_probs=214.5

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeee-------------eecceecceEEEEE
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAV-------------LEEMHTRTVRSCAW   82 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~-------------~~~~h~~~v~~~~~   82 (352)
                      .+.+|.+.|++++|+|++     ...+++|+.|++| +||+.+..........             ....|...|++++|
T Consensus       146 ~~~~h~~~V~sl~~sp~~-----~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f  219 (902)
T 2oaj_A          146 FPAARLSPIVSIQWNPRD-----IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY  219 (902)
T ss_dssp             CSSSCCCCCCEEEEETTE-----EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred             ccccCCCCeEEEEEccCC-----CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence            457899999999999964     3689999999999 9999876533222110             01224578999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccCCceeeeEee---cc-------------ccCCeeEEEEC----CCC-cEEEEeeCCC-
Q 018675           83 SPSGKLLATASFDATTCIWEDVGGDYECVATL---EG-------------HENEVKSVSWN----ASG-TLLATCGRDK-  140 (352)
Q Consensus        83 s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~---~~-------------h~~~v~~v~~~----~~~-~~l~s~~~d~-  140 (352)
                      +|+|++|++|+.|++|++||..+++......+   ..             |...|++++|+    |++ .+|++|+.|. 
T Consensus       220 spdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~  299 (902)
T 2oaj_A          220 HPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISR  299 (902)
T ss_dssp             CTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTT
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCC
Confidence            99999999999999999999877643221122   11             34578999995    433 4566665542 


Q ss_pred             ----cEEEEec---------------------------------------------------------------------
Q 018675          141 ----SVWIWEV---------------------------------------------------------------------  147 (352)
Q Consensus       141 ----~v~vwd~---------------------------------------------------------------------  147 (352)
                          .+++|++                                                                     
T Consensus       300 ~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~  379 (902)
T 2oaj_A          300 GDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETM  379 (902)
T ss_dssp             SSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEE
T ss_pred             CCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEE
Confidence                5555552                                                                     


Q ss_pred             --CCCCeeEE-----------------E---------------------EEeecCccCeeEEEEcCCCCEEEEEeCCCcE
Q 018675          148 --MPGNEFEC-----------------V---------------------SVLQGHAQDVKMVQWHPTMDVLFSCSYDNTI  187 (352)
Q Consensus       148 --~~~~~~~~-----------------~---------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i  187 (352)
                        ..+.....                 +                     ..+.+|...+..++|+|++++|++|+.|++|
T Consensus       380 ~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtV  459 (902)
T 2oaj_A          380 LYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSV  459 (902)
T ss_dssp             ETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEE
T ss_pred             ECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcE
Confidence              11100000                 0                     0011223333344567888999999999999


Q ss_pred             EEEecCCCCCCCceeEee-e-eccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc--------C------
Q 018675          188 KVWWAEDTDSDNWHCVQT-I-SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS--------G------  251 (352)
Q Consensus       188 ~iw~~~~~~~~~~~~~~~-~-~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--------~------  251 (352)
                      ++||+............. + .....+|...|++|+|+|++++||+|+.||+|++|++...+...        .      
T Consensus       460 rlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~  539 (902)
T 2oaj_A          460 RIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFR  539 (902)
T ss_dssp             EEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CC
T ss_pred             EEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeee
Confidence            999987643211110100 0 00112788999999999999999999999999999976432100        0      


Q ss_pred             --------CC------------CccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceee
Q 018675          252 --------DG------------YASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL  311 (352)
Q Consensus       252 --------~~------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~  311 (352)
                              ..            .........+. .|...|.+++++|+++||+|+.|++|++|+.....+..    ...+
T Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~----~~~~  614 (902)
T 2oaj_A          540 RFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH-ANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIY----MENI  614 (902)
T ss_dssp             SCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC-CCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTEEEE----EEEG
T ss_pred             eccccCCccccccccccCCCCCCCccceeEEEE-cCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeEEE----Eeeh
Confidence                    00            00011123333 37889999999999999999999999999764322110    0011


Q ss_pred             eccc-ccCcceeEEEec-----CCC--cceEEEecCCCeEEEEee
Q 018675          312 KKEK-AHDMDVNSVQWS-----PGE--RRLLASASDDGMIKIWEL  348 (352)
Q Consensus       312 ~~~~-~h~~~i~~~~~s-----p~~--~~~l~s~~~Dg~i~iw~~  348 (352)
                      .... +|...|++++|+     ||+  .+.|++|+.|++|++|++
T Consensus       615 ~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          615 REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            2343 899999999999     886  246899999999999998

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.1e-33  Score=244.76  Aligned_cols=247  Identities=28%  Similarity=0.534  Sum_probs=196.9

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCC
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG  150 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~  150 (352)
                      ..|...|++++|+|++++|++|+.|+.+++|+..+++  ....+.+|...|.+++|+|++++|++++.|++|++||+..+
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   97 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG   97 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence            4588999999999999999999999999999987664  45667899999999999999999999999999999999765


Q ss_pred             CeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE
Q 018675          151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV  230 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  230 (352)
                      .   ++..+.+|...+.++.|+|++.++++++.|+.|++|++...     .+...+    ..|..+|.+++|+|++.+|+
T Consensus        98 ~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~----~~~~~~v~~~~~~~~~~~l~  165 (312)
T 4ery_A           98 K---CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----KCLKTL----PAHSDPVSAVHFNRDGSLIV  165 (312)
T ss_dssp             C---EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-----CEEEEE----CCCSSCEEEEEECTTSSEEE
T ss_pred             c---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----EEEEEe----cCCCCcEEEEEEcCCCCEEE
Confidence            4   45677889999999999999999999999999999987643     223333    36888999999999999999


Q ss_pred             EEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccce
Q 018675          231 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM  309 (352)
Q Consensus       231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~  309 (352)
                      +++.||.|++||++..+           ....+...+...+..+.+++++ ++++++.|+.+++|+....         .
T Consensus       166 ~~~~d~~i~~wd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------~  225 (312)
T 4ery_A          166 SSSYDGLCRIWDTASGQ-----------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---------K  225 (312)
T ss_dssp             EEETTSCEEEEETTTCC-----------EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---------E
T ss_pred             EEeCCCcEEEEECCCCc-----------eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---------c
Confidence            99999999999975321           1222223345668889999876 7899999999999976532         1


Q ss_pred             eeecccccCccee--EEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          310 LLKKEKAHDMDVN--SVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       310 ~~~~~~~h~~~i~--~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      .+....+|...+.  ...+++.+..+|++|+.||.|++||+..+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          226 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence            2233445544332  33454433457889999999999998653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.8e-33  Score=246.45  Aligned_cols=252  Identities=21%  Similarity=0.350  Sum_probs=202.6

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeee-eeeeeecceecceEEEEECCCCCEEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWN-CKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ....+..|...|.+++|+|+      +.++++++.|+.+++|++........ ........|...|.+++|+|+++.|++
T Consensus        98 ~~~~~~~~~~~v~~~~~sp~------g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t  171 (354)
T 2pbi_B           98 KEHAVTMPCTWVMACAYAPS------GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILT  171 (354)
T ss_dssp             EEEEEECSSSCCCEEEECTT------SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEE
T ss_pred             cceEEecCCCCEEEEEECCC------CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEE
Confidence            34567789999999999997      57999999999999998754321000 011112358899999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC--CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV  169 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~  169 (352)
                      ++.|++|++||..+++  ++..+.+|...|.+++|+|  ++++|++|+.|++|++||++.+.   ++..+.+|...|.++
T Consensus       172 ~s~D~~v~lwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~---~~~~~~~h~~~v~~v  246 (354)
T 2pbi_B          172 ASGDGTCALWDVESGQ--LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ---CVQAFETHESDVNSV  246 (354)
T ss_dssp             EETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEE
T ss_pred             EeCCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc---EEEEecCCCCCeEEE
Confidence            9999999999987764  5677889999999999987  46899999999999999997654   456778899999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccc
Q 018675          170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ  249 (352)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  249 (352)
                      +|+|++..+++++.|+.|++||+....     ....+.  ...+...+.+++|+|++.+|++|+.|+.|++||+....  
T Consensus       247 ~~~p~~~~l~s~s~D~~v~lwd~~~~~-----~~~~~~--~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~--  317 (354)
T 2pbi_B          247 RYYPSGDAFASGSDDATCRLYDLRADR-----EVAIYS--KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS--  317 (354)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTE-----EEEEEC--CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS--
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEc--CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc--
Confidence            999999999999999999999876431     122221  12334578999999999999999999999999974321  


Q ss_pred             cCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEE
Q 018675          250 SGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFF  294 (352)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~  294 (352)
                               ....+ ..|...+.+++|+|++ ++++++.|+++++|
T Consensus       318 ---------~~~~l-~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          318 ---------RVSIL-FGHENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             ---------EEEEE-CCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             ---------eEEEE-ECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence                     12222 2477889999999986 79999999999999

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1e-33  Score=289.52  Aligned_cols=303  Identities=25%  Similarity=0.420  Sum_probs=238.5

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC--CCCEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP--SGKLL   89 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l   89 (352)
                      ..+.++.+|.+.|++++|+|+      ++++++++.|++|++|++.+++....    + ..|...|.+++|+|  ++.++
T Consensus       648 ~~~~~~~~h~~~v~~~~~s~~------~~~l~s~~~d~~v~vwd~~~~~~~~~----~-~~~~~~v~~~~~~~~~~~~~l  716 (1249)
T 3sfz_A          648 EKLLDIKAHEDEVLCCAFSSD------DSYIATCSADKKVKIWDSATGKLVHT----Y-DEHSEQVNCCHFTNKSNHLLL  716 (1249)
T ss_dssp             CEEEEECCCSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCCEEEE----E-ECCSSCEEEEEECSSSSCCEE
T ss_pred             CEEEEeccCCCCEEEEEEecC------CCEEEEEeCCCeEEEEECCCCceEEE----E-cCCCCcEEEEEEecCCCceEE
Confidence            446678899999999999997      57999999999999999988754322    2 34889999999999  55689


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCee----------------
Q 018675           90 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF----------------  153 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~----------------  153 (352)
                      ++|+.|+.+++||..++.  +...+.+|.+.|++++|+|++++|++++.|++|++||+..+...                
T Consensus       717 ~sg~~d~~v~vwd~~~~~--~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  794 (1249)
T 3sfz_A          717 ATGSNDFFLKLWDLNQKE--CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP  794 (1249)
T ss_dssp             EEEETTSCEEEEETTSSS--EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-------
T ss_pred             EEEeCCCeEEEEECCCcc--hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcc
Confidence            999999999999987764  56677899999999999999999999999999999997533110                


Q ss_pred             ------------------------------------------------------------------------------EE
Q 018675          154 ------------------------------------------------------------------------------EC  155 (352)
Q Consensus       154 ------------------------------------------------------------------------------~~  155 (352)
                                                                                                    ..
T Consensus       795 ~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~  874 (1249)
T 3sfz_A          795 EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK  874 (1249)
T ss_dssp             -CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE
T ss_pred             ccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Confidence                                                                                          11


Q ss_pred             EEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCC--------------------------------------
Q 018675          156 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS--------------------------------------  197 (352)
Q Consensus       156 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--------------------------------------  197 (352)
                      +..+.+|...|.+++|+|++..+++++.|+.+++|+......                                      
T Consensus       875 ~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  954 (1249)
T 3sfz_A          875 VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG  954 (1249)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC
T ss_pred             eeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcc
Confidence            223456778899999999999999999999999998532000                                      


Q ss_pred             ------------------CCcee---------Ee-----eeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          198 ------------------DNWHC---------VQ-----TISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       198 ------------------~~~~~---------~~-----~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                                        ..+..         +.     .......+|...|.+++|+|++++|++++.||.|++|++..
T Consensus       955 ~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A          955 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp             CEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred             eEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence                              00000         00     00011246888999999999999999999999999999764


Q ss_pred             cccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEE
Q 018675          246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ  325 (352)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  325 (352)
                      ....             ....+...+.++.+++++.+++++.|+.+++|+.....         ......+|...|++++
T Consensus      1035 ~~~~-------------~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---------~~~~~~~~~~~v~~~~ 1092 (1249)
T 3sfz_A         1035 GDYV-------------FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR---------IERDFTCHQGTVLSCA 1092 (1249)
T ss_dssp             TEEE-------------CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC---------CCEEEECCSSCCCCEE
T ss_pred             CceE-------------EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc---------eeEEEcccCCcEEEEE
Confidence            3221             11246678999999999999999999999999765432         2334568999999999


Q ss_pred             ecCCCcceEEEecCCCeEEEEeecc
Q 018675          326 WSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       326 ~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      |+|+++ +|++++.||+|++|++..
T Consensus      1093 ~s~d~~-~l~s~s~d~~v~iwd~~~ 1116 (1249)
T 3sfz_A         1093 ISSDAT-KFSSTSADKTAKIWSFDL 1116 (1249)
T ss_dssp             ECSSSS-SCEEECCSSCCCEECSSS
T ss_pred             ECCCCC-EEEEEcCCCcEEEEECCC
Confidence            999986 578999999999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.6e-33  Score=246.66  Aligned_cols=301  Identities=18%  Similarity=0.234  Sum_probs=220.5

Q ss_pred             ccceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCC
Q 018675            8 NYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK   87 (352)
Q Consensus         8 ~~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~   87 (352)
                      ..+...+..+.+|.+.|++++|+|+..   .+.+|++|+.|+.|++|++.+.....  .. ....|...|++++|+|+++
T Consensus        26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~---~g~~l~~~~~dg~i~iw~~~~~~~~~--~~-~~~~h~~~v~~~~~~~~~~   99 (368)
T 3mmy_A           26 HNPMKDIEVTSSPDDSIGCLSFSPPTL---PGNFLIAGSWANDVRCWEVQDSGQTI--PK-AQQMHTGPVLDVCWSDDGS   99 (368)
T ss_dssp             SCTTCCEECSSCCSSCEEEEEECCTTS---SSEEEEEEETTSEEEEEEECTTSCEE--EE-EEEECSSCEEEEEECTTSS
T ss_pred             CCCcceeEeccCCCCceEEEEEcCCCC---CceEEEEECCCCcEEEEEcCCCCcee--EE-EeccccCCEEEEEECcCCC
Confidence            335567788899999999999999731   13799999999999999998633211  11 2245889999999999999


Q ss_pred             EEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEE--CCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccC
Q 018675           88 LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW--NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD  165 (352)
Q Consensus        88 ~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~  165 (352)
                      +|++++.|+.+++||..++..  . .+.+|...|++++|  +|++.+|++++.|++|++||+..+..   +..+..+. .
T Consensus       100 ~l~s~~~dg~v~iwd~~~~~~--~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~-~  172 (368)
T 3mmy_A          100 KVFTASCDKTAKMWDLSSNQA--I-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP---MMVLQLPE-R  172 (368)
T ss_dssp             EEEEEETTSEEEEEETTTTEE--E-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC---SEEEECSS-C
T ss_pred             EEEEEcCCCcEEEEEcCCCCc--e-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE---EEEEecCC-C
Confidence            999999999999999877642  2 35579999999999  89999999999999999999976653   33444443 5


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE----EEEEeCCCcEEEE
Q 018675          166 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK----LVSCSDDLTIKIW  241 (352)
Q Consensus       166 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~----l~s~~~dg~i~iw  241 (352)
                      +.++.+.+  ..+++++.++.+.+|++.....    ..... ..  .+...+.++.+.++...    +++++.||.|++|
T Consensus       173 ~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~----~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~  243 (368)
T 3mmy_A          173 CYCADVIY--PMAVVATAERGLIVYQLENQPS----EFRRI-ES--PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH  243 (368)
T ss_dssp             EEEEEEET--TEEEEEEGGGCEEEEECSSSCE----EEEEC-CC--SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred             ceEEEecC--CeeEEEeCCCcEEEEEeccccc----hhhhc-cc--cccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence            56666654  4788999999999998765321    11111 11  23344555555554443    9999999999999


Q ss_pred             cCCccccccCCCCccceeeEEeec-----------ccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccce
Q 018675          242 GADITRMQSGDGYASWRHLCTISG-----------YHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM  309 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~  309 (352)
                      +++.....        .....+..           .+...+.+++|++++ ++++++.|+.+++|+....         .
T Consensus       244 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---------~  306 (368)
T 3mmy_A          244 YINPPNPA--------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---------T  306 (368)
T ss_dssp             ESSCSCHH--------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---------E
T ss_pred             ecCCCCcc--------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---------c
Confidence            98643210        00111111           122369999999976 8999999999999976432         2


Q ss_pred             eeecccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       310 ~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      .+....+|...|++++|+|+++ +|++++.|+..+.|++
T Consensus       307 ~~~~~~~~~~~v~~~~~s~~g~-~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          307 KLKTSEQLDQPISACCFNHNGN-IFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EEEECCCCSSCEEEEEECTTSS-CEEEEECCCSTTCGGG
T ss_pred             EEEEecCCCCCceEEEECCCCC-eEEEEecccccccccc
Confidence            3445678999999999999986 5789998886666554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1e-32  Score=248.42  Aligned_cols=245  Identities=23%  Similarity=0.405  Sum_probs=191.7

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE  102 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  102 (352)
                      .|++++|+|+      +++|++|+.|++|++|++.+++..    ..+ ..|...|++++|+|+++.|++|+.|+++++||
T Consensus       125 ~v~~v~~s~d------g~~l~s~~~d~~i~iwd~~~~~~~----~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd  193 (393)
T 1erj_A          125 YIRSVCFSPD------GKFLATGAEDRLIRIWDIENRKIV----MIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD  193 (393)
T ss_dssp             BEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEE----EEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEECCC------CCEEEEEcCCCeEEEEECCCCcEE----EEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence            4999999997      579999999999999999876432    122 45889999999999999999999999999999


Q ss_pred             ccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEE----EEeecCccCeeEEEEcCCCCE
Q 018675          103 DVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECV----SVLQGHAQDVKMVQWHPTMDV  177 (352)
Q Consensus       103 ~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~  177 (352)
                      ..+++  +...+. +...+.+++|+| ++.+|++++.|++|++||+..+.....+    ....+|...|.+++|+|++.+
T Consensus       194 ~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~  270 (393)
T 1erj_A          194 LRTGQ--CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS  270 (393)
T ss_dssp             TTTTE--EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE
T ss_pred             CCCCe--eEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE
Confidence            87764  333443 567899999999 8999999999999999998765432222    112578899999999999999


Q ss_pred             EEEEeCCCcEEEEecCCCCCC-------CceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          178 LFSCSYDNTIKVWWAEDTDSD-------NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       178 l~s~~~d~~i~iw~~~~~~~~-------~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      |++++.|+.|++|++......       ...+...    ..+|...|.+++|+|++.+|++|+.|+.|++||.+..+   
T Consensus       271 l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~---  343 (393)
T 1erj_A          271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT----YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN---  343 (393)
T ss_dssp             EEEEETTSEEEEEEC---------------CEEEE----EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC---
T ss_pred             EEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE----EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe---
Confidence            999999999999998653211       0111222    23788999999999999999999999999999975321   


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecC-------CceEEecCCCCeEEEEEcc
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSR-------EGIIASGAADDSVQFFVES  297 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~s~~~d~~v~~~~~~  297 (352)
                              ....+. .|...+.++++++       ..++++++.|+++++|...
T Consensus       344 --------~~~~l~-~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          344 --------PLLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             --------EEEEEE-CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             --------EEEEEC-CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence                    222332 4777899999876       3489999999999999653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.5e-33  Score=263.63  Aligned_cols=255  Identities=18%  Similarity=0.307  Sum_probs=199.6

Q ss_pred             eeeeeecCCccc-eEEEEEcc--CCCCCCCccEEEEeeCCCeEEEEecCCCce----eeeeeeeeecceecceEEEEECC
Q 018675           12 REIQTLEGHTDR-VWSLAWKP--TAGVDGVAPVFASCSGDKTVRIWEQSASSR----FWNCKAVLEEMHTRTVRSCAWSP   84 (352)
Q Consensus        12 ~~~~~~~gH~~~-V~~i~~~p--~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~----~~~~~~~~~~~h~~~v~~~~~s~   84 (352)
                      .....+.+|.+. |++++|+|  +      +++|++++.|++|++|++.++..    .......+ ..|...|.+++|+|
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~------~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~  126 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKG------SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDF  126 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTT------CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECT
T ss_pred             ccceEEecCCCceEEEEEECcCCC------CCEEEEecCCCEEEEEeCCCCcccccccccccchh-hcccccEEEEEEeC
Confidence            456778899999 99999999  6      57999999999999999864310    01111222 34788999999999


Q ss_pred             CCCEEEEEeCC----CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeEEEEEe
Q 018675           85 SGKLLATASFD----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVL  159 (352)
Q Consensus        85 ~~~~l~s~~~d----~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~  159 (352)
                      ++++|++++.+    +.+.+|+  .+  .....+.+|...|++++|+|++. ++++++.|+.|++||+...   +.+..+
T Consensus       127 ~~~~l~~~~~~~~~~~~v~~~d--~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~---~~~~~~  199 (615)
T 1pgu_A          127 EGRRLCVVGEGRDNFGVFISWD--SG--NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF---KFSASD  199 (615)
T ss_dssp             TSSEEEEEECCSSCSEEEEETT--TC--CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB---EEEEEE
T ss_pred             CCCEEEEeccCCCCccEEEEEE--CC--CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc---ceeeee
Confidence            99999999988    6888887  33  34667789999999999999998 8999999999999998644   456677


Q ss_pred             ecCcc---CeeEEEEcCC-CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC
Q 018675          160 QGHAQ---DVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD  235 (352)
Q Consensus       160 ~~h~~---~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d  235 (352)
                      .+|..   .|.+++|+|+ +.++++++.|+.|++|++....     ....+.....+|...|.+++|+ ++.+|++++.|
T Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d  273 (615)
T 1pgu_A          200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-----FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD  273 (615)
T ss_dssp             CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-----EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT
T ss_pred             cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-----EeEEecccccccCCceEEEEEc-CCCEEEEEcCC
Confidence            88988   8999999999 9999999999999999875432     2222211111688999999999 99999999999


Q ss_pred             CcEEEEcCCccccccCCCCccceeeEEeec---ccCcceEEEEecCCceEEecCCCCeEEEEEcc
Q 018675          236 LTIKIWGADITRMQSGDGYASWRHLCTISG---YHDRTIFSVHWSREGIIASGAADDSVQFFVES  297 (352)
Q Consensus       236 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~  297 (352)
                      |.|++||++..+.           ...+..   .....+.++.++.+.++++++.|+.+++|+..
T Consensus       274 ~~i~~wd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~  327 (615)
T 1pgu_A          274 ATIRVWDVTTSKC-----------VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG  327 (615)
T ss_dssp             SEEEEEETTTTEE-----------EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             CcEEEEECCCCcE-----------EEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC
Confidence            9999999763221           111111   12345667777777799999999999999754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-33  Score=254.42  Aligned_cols=292  Identities=20%  Similarity=0.331  Sum_probs=216.7

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC-CCCEEEEEeCCCcEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP-SGKLLATASFDATTCIW  101 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~i~  101 (352)
                      ....++++|..     ..++++++.||.|+||++........... ....|...|++++|+| ++++|++|+.|++|++|
T Consensus        36 ~~~~~~~~~~~-----~~~~~~~~~~g~i~v~~~~~~~~~~~~~~-~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw  109 (402)
T 2aq5_A           36 DSGFCAVNPKF-----MALICEASGGGAFLVLPLGKTGRVDKNVP-LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVW  109 (402)
T ss_dssp             SSCSEEECSSE-----EEEEBCCSSSCCEEEEETTCCEECCTTCC-CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred             CCCcEEECCCe-----EEEEEEEcCCCEEEEEECccCCCCCCCCc-eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence            34457777753     23555688999999999865432211111 1245899999999999 99999999999999999


Q ss_pred             EccCCce-----eeeEeeccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEEEEe--ecCccCeeEEEEcC
Q 018675          102 EDVGGDY-----ECVATLEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSVL--QGHAQDVKMVQWHP  173 (352)
Q Consensus       102 ~~~~~~~-----~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~h~~~v~~~~~~~  173 (352)
                      +..++..     .+...+.+|...|.+++|+|++ ++|++++.|++|++||+..+   .++..+  .+|...|.+++|+|
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~  186 (402)
T 2aq5_A          110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG---AAVLTLGPDVHPDTIYSVDWSR  186 (402)
T ss_dssp             ECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT---EEEEEECTTTCCSCEEEEEECT
T ss_pred             EccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC---CccEEEecCCCCCceEEEEECC
Confidence            9876532     3456778999999999999998 69999999999999999755   345566  67999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCccc-EEEEEEcCCCCEEEEE---eCCCcEEEEcCCccccc
Q 018675          174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST-IWALSFNAKGDKLVSC---SDDLTIKIWGADITRMQ  249 (352)
Q Consensus       174 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~l~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~  249 (352)
                      ++.+|++++.|+.|++|++...     .....+.   .+|... +.++.|+|++.+|++|   +.|+.|++||++.... 
T Consensus       187 ~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~-  257 (402)
T 2aq5_A          187 DGALICTSCRDKRVRVIEPRKG-----TVVAEKD---RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE-  257 (402)
T ss_dssp             TSSCEEEEETTSEEEEEETTTT-----EEEEEEE---CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS-
T ss_pred             CCCEEEEEecCCcEEEEeCCCC-----ceeeeec---cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC-
Confidence            9999999999999999987643     2233321   245554 8899999999999999   7999999999864221 


Q ss_pred             cCCCCccceeeEEeecccCcceEEEEecCCc-eE-EecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEec
Q 018675          250 SGDGYASWRHLCTISGYHDRTIFSVHWSREG-II-ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS  327 (352)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~-~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  327 (352)
                               ........+...+..+.+++++ ++ ++++.|+.+++|+......     ....+.. ..|...|++++|+
T Consensus       258 ---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~-----~~~~l~~-~~~~~~v~~~~~s  322 (402)
T 2aq5_A          258 ---------PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP-----FLHYLSM-FSSKESQRGMGYM  322 (402)
T ss_dssp             ---------CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT-----CEEEEEE-ECCSSCCSEEEEC
T ss_pred             ---------CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc-----ceEeecc-cccCCcccceEEe
Confidence                     0111122245668889999876 45 4677899999997754321     0111122 2367899999999


Q ss_pred             CCCcceEEEecCCCeEEEEeecc
Q 018675          328 PGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       328 p~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      |++. +++  +.|+.+++|++..
T Consensus       323 p~~~-~~~--s~~~~~~~~~l~~  342 (402)
T 2aq5_A          323 PKRG-LEV--NKCEIARFYKLHE  342 (402)
T ss_dssp             CGGG-SCG--GGTEEEEEEEEET
T ss_pred             cccc-cce--ecceeEEEEEcCC
Confidence            9875 453  4577999999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=274.21  Aligned_cols=264  Identities=24%  Similarity=0.412  Sum_probs=207.3

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC--CCEEEE
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS--GKLLAT   91 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s   91 (352)
                      +..+.||.+.|++++|+|+      +++|++|+.||+|++|+......  .....+ ..|..+|++++|+|+  +++|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~d------g~~latg~~dg~I~vwd~~~~~~--~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s   72 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYY------GKRLATCSSDKTIKIFEVEGETH--KLIDTL-TGHEGPVWRVDWAHPKFGTILAS   72 (753)
T ss_dssp             ------CCCCEEEECCCSS------SCCEEEEETTTEEEEEEEETTEE--EEEEEE-CCCSSCEEEEEECCTTSCSEEEE
T ss_pred             eeecccCcceeEEEEECCC------CCeEEEEECCCcEEEEecCCCCC--ccceec-cCCcCceEEEEecCCCCCCEEEE
Confidence            4568899999999999997      47899999999999999874321  112222 458899999999988  999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCC--CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV  169 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~  169 (352)
                      |+.||.|++||..++.......+.+|...|++++|+|+  +..+++|+.|++|++||+...... ....+.+|...|.++
T Consensus        73 ~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~-~~~~~~~~~~~v~~l  151 (753)
T 3jro_A           73 CSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT-SPIIIDAHAIGVNSA  151 (753)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC-CCEEEECCSSCEEEE
T ss_pred             EeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc-ceeEeecCCCceEEE
Confidence            99999999999988765567788899999999999999  999999999999999998765322 233567899999999


Q ss_pred             EEcC-------------CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC---CCEEEEEe
Q 018675          170 QWHP-------------TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK---GDKLVSCS  233 (352)
Q Consensus       170 ~~~~-------------~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~---~~~l~s~~  233 (352)
                      .|+|             ++..+++|+.|+.|++|++..... ......    ...+|...|.+++|+|+   +.+|++|+
T Consensus       152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~----~~~~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLES----TLEGHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             EECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-EEEEEE----EECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             EecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-cceeee----eecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence            9999             488999999999999998865321 112222    23478999999999999   89999999


Q ss_pred             CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeec
Q 018675          234 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK  313 (352)
Q Consensus       234 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~  313 (352)
                      .||.|++||++.....                                                         .......
T Consensus       227 ~Dg~I~iwd~~~~~~~---------------------------------------------------------~~~~~~~  249 (753)
T 3jro_A          227 QDRTCIIWTQDNEQGP---------------------------------------------------------WKKTLLK  249 (753)
T ss_dssp             SSSCEEEEEESSSSSC---------------------------------------------------------CBCCBSS
T ss_pred             cCCEEEEecCCCCCCc---------------------------------------------------------ceeEEec
Confidence            9999999986421000                                                         0000112


Q ss_pred             ccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       314 ~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ..+|...|++++|+|+++ +|++++.||.|++|++..
T Consensus       250 ~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          250 EEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBCCS
T ss_pred             cCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEecCC
Confidence            346788999999999986 678999999999999863

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.8e-32  Score=249.74  Aligned_cols=286  Identities=24%  Similarity=0.381  Sum_probs=220.7

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEEC--CCCCEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWS--PSGKLL   89 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l   89 (352)
                      +.+.++.+|.+.|++++|+|+       ..+++|+.|++|++|++.++....    .+ ..|...|.+++|+  ++++++
T Consensus       153 ~~~~~~~~h~~~V~~l~~~~~-------~~l~s~s~dg~i~vwd~~~~~~~~----~~-~~h~~~v~~l~~~~~~~~~~l  220 (464)
T 3v7d_B          153 KFLLQLSGHDGGVWALKYAHG-------GILVSGSTDRTVRVWDIKKGCCTH----VF-EGHNSTVRCLDIVEYKNIKYI  220 (464)
T ss_dssp             EEEEEECCCSSCEEEEEECST-------TEEEEEETTSCEEEEETTTTEEEE----EE-CCCSSCEEEEEEEESSSCEEE
T ss_pred             cEEEEEeCCCcCEEEEEEcCC-------CEEEEEeCCCCEEEEECCCCcEEE----EE-CCCCCccEEEEEecCCCCCEE
Confidence            456778899999999999986       389999999999999998764322    22 3588999999998  578999


Q ss_pred             EEEeCCCcEEEEEccCCcee---------------------eeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecC
Q 018675           90 ATASFDATTCIWEDVGGDYE---------------------CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM  148 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~---------------------~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~  148 (352)
                      ++|+.|+++++||..+....                     ....+.+|...|.++  +++++++++++.|++|++||+.
T Consensus       221 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~  298 (464)
T 3v7d_B          221 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVA  298 (464)
T ss_dssp             EEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETT
T ss_pred             EEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECC
Confidence            99999999999997654321                     244667888888887  5778999999999999999987


Q ss_pred             CCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE
Q 018675          149 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK  228 (352)
Q Consensus       149 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~  228 (352)
                      .+   .++..+.+|...+.++.|+|++..+++++.|+.|++|++...     .+...+    .+|...|.++.|+  +.+
T Consensus       299 ~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-----~~~~~~----~~h~~~v~~~~~~--~~~  364 (464)
T 3v7d_B          299 QM---KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG-----ELMYTL----QGHTALVGLLRLS--DKF  364 (464)
T ss_dssp             TT---EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-----EEEEEE----CCCSSCEEEEEEC--SSE
T ss_pred             CC---cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----cEEEEE----eCCCCcEEEEEEc--CCE
Confidence            54   456677889999999999999999999999999999987543     233333    3688999999997  579


Q ss_pred             EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCccc
Q 018675          229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY  307 (352)
Q Consensus       229 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~  307 (352)
                      |++++.||.|++||++....           ...  ..+...+..+.+++++ ++++++ |+.+++|+.....+      
T Consensus       365 l~s~s~dg~v~vwd~~~~~~-----------~~~--~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~------  424 (464)
T 3v7d_B          365 LVSAAADGSIRGWDANDYSR-----------KFS--YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL------  424 (464)
T ss_dssp             EEEEETTSEEEEEETTTCCE-----------EEE--EECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE------
T ss_pred             EEEEeCCCcEEEEECCCCce-----------eee--ecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE------
Confidence            99999999999999763211           111  1234445556666665 566665 99999997654321      


Q ss_pred             ceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       308 ~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                        +.....+|...|++++|++  +.++++++.||.+.+|-+.
T Consensus       425 --~~~~~~~~~~~v~~v~~~~--~~l~~~~~~~g~~~i~~ld  462 (464)
T 3v7d_B          425 --VHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEILD  462 (464)
T ss_dssp             --EESCTTTTCSEEEEEEEET--TEEEEEEEETTEEEEEEEE
T ss_pred             --EehhhccCCCcEEEEEecC--CEEEEEEEeCCeEEEEEee
Confidence              2222457889999999973  4678888889887776554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-32  Score=272.02  Aligned_cols=213  Identities=12%  Similarity=0.188  Sum_probs=168.2

Q ss_pred             cceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCE
Q 018675            9 YELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKL   88 (352)
Q Consensus         9 ~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~   88 (352)
                      |...... ..||.+.|++++|+|+      +.+||+|+.||+|+||+.......      ....|...|.+++|+| |++
T Consensus         6 ~~~~~~~-~~gh~~~V~~lafspd------g~~lAsgs~Dg~I~lw~~~~~~~~------~~~~~~~~V~~l~fsp-g~~   71 (902)
T 2oaj_A            6 FSLAETN-KYGMSSKPIAAAFDFT------QNLLAIATVTGEVHIYGQQQVEVV------IKLEDRSAIKEMRFVK-GIY   71 (902)
T ss_dssp             EEEEEEE-EEECSSCEEEEEEETT------TTEEEEEETTSEEEEECSTTCEEE------EECSSCCCEEEEEEET-TTE
T ss_pred             eeecccc-ccCCCCCcEEEEECCC------CCEEEEEeCCCEEEEEeCCCcEEE------EEcCCCCCEEEEEEcC-CCE
Confidence            3334443 3499999999999997      579999999999999998654321      1123678999999999 889


Q ss_pred             EEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEE---------EEe
Q 018675           89 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV---------SVL  159 (352)
Q Consensus        89 l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~---------~~~  159 (352)
                      |++++.|++|++||..+++  ++..+. |.+.|++++|+|++++|++|+.|++|++||+..+... ..         ..+
T Consensus        72 L~S~s~D~~v~lWd~~~~~--~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~  147 (902)
T 2oaj_A           72 LVVINAKDTVYVLSLYSQK--VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFP  147 (902)
T ss_dssp             EEEEETTCEEEEEETTTCS--EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCS
T ss_pred             EEEEECcCeEEEEECCCCc--EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceecccccccccc
Confidence            9999999999999987764  344454 6789999999999999999999999999998754321 11         123


Q ss_pred             ecCccCeeEEEEcCC-CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeec--------------cCCCCcccEEEEEEcC
Q 018675          160 QGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE--------------SNNGHSSTIWALSFNA  224 (352)
Q Consensus       160 ~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~--------------~~~~h~~~i~~l~~~~  224 (352)
                      .+|...|++++|+|+ ...+++|+.|+.| +||+...     .....+..              ....|...|.+++|+|
T Consensus       148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp  221 (902)
T 2oaj_A          148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN-----EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP  221 (902)
T ss_dssp             SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT-----EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred             ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC-----ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence            578889999999996 4688999999999 9987653     22222221              1124567899999999


Q ss_pred             CCCEEEEEeCCCcEEEEcCCc
Q 018675          225 KGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       225 ~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      +|.+|++++.||.|++||++.
T Consensus       222 dg~~lasgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          222 NSLHIITIHEDNSLVFWDANS  242 (902)
T ss_dssp             TSSEEEEEETTCCEEEEETTT
T ss_pred             CCCEEEEEECCCeEEEEECCC
Confidence            999999999999999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.8e-33  Score=254.16  Aligned_cols=274  Identities=20%  Similarity=0.416  Sum_probs=207.4

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCce------eeeeeeeeecceecceEEEEECCCCC-
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSR------FWNCKAVLEEMHTRTVRSCAWSPSGK-   87 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~------~~~~~~~~~~~h~~~v~~~~~s~~~~-   87 (352)
                      ..+.+|.+.|++++|+|+.     +.+||+++.||.|++|++.....      .......+ ..|...|++++|+|+++ 
T Consensus       122 ~~~~~h~~~v~~l~~~p~~-----~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~  195 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQN-----ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNG  195 (430)
T ss_dssp             EEEEEESSCCSEEEEETTE-----EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTT
T ss_pred             EEEEcCCCcEEEEEECCCC-----CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCC
Confidence            4456899999999999963     46899999999999999865200      00111112 35888999999999998 


Q ss_pred             EEEEEeCCCcEEEEEccCCce-----eeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec
Q 018675           88 LLATASFDATTCIWEDVGGDY-----ECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG  161 (352)
Q Consensus        88 ~l~s~~~d~~i~i~~~~~~~~-----~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  161 (352)
                      +|++|+.||.|++|+...+..     .....+.+|...|.+++|+| ++.+|++++.|+.|++||++.......+..+..
T Consensus       196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            999999999999999865321     12345678999999999999 678999999999999999986532334555678


Q ss_pred             CccCeeEEEEcCCCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-EEEEEeCCCcEE
Q 018675          162 HAQDVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCSDDLTIK  239 (352)
Q Consensus       162 h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s~~~dg~i~  239 (352)
                      |...+++++|+|++. ++++|+.|+.|++|++.....    .+..+    .+|...|.+++|+|++. +|++++.||.|+
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~----~~~~~----~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~  347 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----KLHSF----ESHKDEIFQVQWSPHNETILASSGTDRRLH  347 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----CSEEE----ECCSSCEEEEEECSSCTTEEEEEETTSCCE
T ss_pred             CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----CeEEe----ecCCCCEEEEEECCCCCCEEEEEeCCCcEE
Confidence            999999999999887 788999999999999865321    12222    25888999999999985 689999999999


Q ss_pred             EEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCc
Q 018675          240 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM  319 (352)
Q Consensus       240 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~  319 (352)
                      +||+.......    .         . ..                 ..+                 ....++....+|..
T Consensus       348 iwd~~~~~~~~----~---------~-~~-----------------~~~-----------------~~~~~~~~~~~h~~  379 (430)
T 2xyi_A          348 VWDLSKIGEEQ----S---------T-ED-----------------AED-----------------GPPELLFIHGGHTA  379 (430)
T ss_dssp             EEEGGGTTCCC----C---------H-HH-----------------HHH-----------------CCTTEEEECCCCSS
T ss_pred             EEeCCCCcccc----C---------c-cc-----------------ccc-----------------CCcceEEEcCCCCC
Confidence            99875311000    0         0 00                 000                 00112234567889


Q ss_pred             ceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          320 DVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       320 ~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .|++++|+|+++.+|++++.||.|+||++..
T Consensus       380 ~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          380 KISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             CEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            9999999999876899999999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.1e-34  Score=254.78  Aligned_cols=263  Identities=21%  Similarity=0.332  Sum_probs=203.0

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeee--eeeeeecceecceEEEEECCCC-CE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWN--CKAVLEEMHTRTVRSCAWSPSG-KL   88 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~~~-~~   88 (352)
                      ..+.++.+|...|.+++|+|+      +++|++|+.|+++++|++.+......  ........|...|.++.|.|++ ..
T Consensus        99 ~~~~~~~~h~~~v~~~~~s~~------g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~  172 (380)
T 3iz6_a           99 QKTHAIKLHCPWVMECAFAPN------GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR  172 (380)
T ss_dssp             EEEEEEECCCTTCCCCEECTT------SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSC
T ss_pred             ccceEEecCCCCEEEEEECCC------CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCE
Confidence            345678899999999999997      57999999999999999865321000  0011224588999999999974 67


Q ss_pred             EEEEeCCCcEEEEEccCCceeeeEee-----ccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecC
Q 018675           89 LATASFDATTCIWEDVGGDYECVATL-----EGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH  162 (352)
Q Consensus        89 l~s~~~d~~i~i~~~~~~~~~~~~~~-----~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h  162 (352)
                      |++|+.|++|++||..++..  +..+     .+|...|.+++|++ ++++|++|+.|++|++||++...  ..+..+.+|
T Consensus       173 l~s~s~D~~i~~wd~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~--~~~~~~~~h  248 (380)
T 3iz6_a          173 LITGSGDQTCVLWDVTTGQR--ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS--RAVRTYHGH  248 (380)
T ss_dssp             EEEECTTSCEEEECTTTCCE--EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC--CCCEEECCC
T ss_pred             EEEECCCCcEEEEEcCCCcE--EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC--cceEEECCc
Confidence            99999999999999877643  3333     57899999999987 88999999999999999986432  235667899


Q ss_pred             ccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeec---cCCCCcccEEEEEEcCCCCEEEEEeCCCcEE
Q 018675          163 AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE---SNNGHSSTIWALSFNAKGDKLVSCSDDLTIK  239 (352)
Q Consensus       163 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~---~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~  239 (352)
                      ...|.+++|+|++.+|++++.|+.|++||+...     .....+..   ....+...|.+++|+|+|++|++|+.||.|+
T Consensus       249 ~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~  323 (380)
T 3iz6_a          249 EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-----HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY  323 (380)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSCEEEEETTTT-----EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEE
T ss_pred             CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC-----cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEE
Confidence            999999999999999999999999999987653     22222221   1122345689999999999999999999999


Q ss_pred             EEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEcc
Q 018675          240 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES  297 (352)
Q Consensus       240 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~  297 (352)
                      +||+...+..        .........|...|.+++|++++ ++++|+.|+++++|+..
T Consensus       324 vwd~~~~~~~--------~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          324 VWDTLLAEMV--------LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             EEETTTCCEE--------EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             EEECCCCceE--------EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence            9997533211        01111123477889999999976 89999999999999764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.7e-32  Score=246.17  Aligned_cols=286  Identities=27%  Similarity=0.457  Sum_probs=225.8

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      +.+.++.+|.+.|++++|++        .++++|+.|++|++|++.+++...    .+ ..|...|.+++|+  ++.+++
T Consensus       150 ~~~~~~~~h~~~v~~~~~~~--------~~l~s~~~dg~i~vwd~~~~~~~~----~~-~~h~~~v~~~~~~--~~~l~s  214 (445)
T 2ovr_B          150 KCLRTLVGHTGGVWSSQMRD--------NIIISGSTDRTLKVWNAETGECIH----TL-YGHTSTVRCMHLH--EKRVVS  214 (445)
T ss_dssp             CEEEECCCCSSCEEEEEEET--------TEEEEEETTSCEEEEETTTTEEEE----EE-CCCSSCEEEEEEE--TTEEEE
T ss_pred             cEEEEEcCCCCCEEEEEecC--------CEEEEEeCCCeEEEEECCcCcEEE----EE-CCCCCcEEEEEec--CCEEEE
Confidence            45667889999999999975        489999999999999998764322    22 3588899999995  578999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      |+.|+++++||..+++  +...+.+|...|.++.|  +++.+++++.|++|++||+..+   .++..+.+|...+.++.|
T Consensus       215 ~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~  287 (445)
T 2ovr_B          215 GSRDATLRVWDIETGQ--CLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE---TCLHTLQGHTNRVYSLQF  287 (445)
T ss_dssp             EETTSEEEEEESSSCC--EEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT---EEEEEECCCSSCEEEEEE
T ss_pred             EeCCCEEEEEECCCCc--EEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC---cEeEEecCCCCceEEEEE
Confidence            9999999999987663  46677889999999999  6789999999999999998654   456677889999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG  251 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (352)
                        ++..+++++.|+.|++|++...     .....+    .+|...+.++.++  +.++++|+.||.|++||++..+    
T Consensus       288 --~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~----~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~----  350 (445)
T 2ovr_B          288 --DGIHVVSGSLDTSIRVWDVETG-----NCIHTL----TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQ----  350 (445)
T ss_dssp             --CSSEEEEEETTSCEEEEETTTC-----CEEEEE----CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC----
T ss_pred             --CCCEEEEEeCCCeEEEEECCCC-----CEEEEE----cCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCc----
Confidence              7789999999999999987653     223333    3678888888774  6799999999999999975321    


Q ss_pred             CCCccceeeEEeec--ccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceee-ecccccCcceeEEEecC
Q 018675          252 DGYASWRHLCTISG--YHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL-KKEKAHDMDVNSVQWSP  328 (352)
Q Consensus       252 ~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~i~~~~~sp  328 (352)
                             ....+..  .|...+.++.++ +.++++++.||.+++|+.......     ..+. ....+|.+.|++++|+|
T Consensus       351 -------~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~  417 (445)
T 2ovr_B          351 -------CLQTLQGPNKHQSAVTCLQFN-KNFVITSSDDGTVKLWDLKTGEFI-----RNLVTLESGGSGGVVWRIRASN  417 (445)
T ss_dssp             -------EEEEECSTTSCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEE-----EEEEECTTGGGTCEEEEEEECS
T ss_pred             -------EEEEEccCCCCCCCEEEEEEC-CCEEEEEeCCCeEEEEECCCCcee-----eeeeccccCCCCceEEEEEecC
Confidence                   1222222  266778999986 478999999999999976543221     1111 12247889999999999


Q ss_pred             CCcceEEEecCCCe----EEEEeecc
Q 018675          329 GERRLLASASDDGM----IKIWELAN  350 (352)
Q Consensus       329 ~~~~~l~s~~~Dg~----i~iw~~~~  350 (352)
                      ++. ++++|+.||+    |.|||+..
T Consensus       418 ~~~-~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          418 TKL-VCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             SEE-EEEEECSSSSSCCEEEEEECCC
T ss_pred             CEE-EEEEcccCCCCccEEEEEECCC
Confidence            875 7899999998    99999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-34  Score=257.96  Aligned_cols=275  Identities=9%  Similarity=0.072  Sum_probs=206.9

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcE
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATT   98 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   98 (352)
                      .-.+.|.+++|+|+      ++++||+|.|++|+  +.....       .+ ..|...|.+++|+|+|       .++.+
T Consensus        13 ~~~~~v~sv~~SpD------G~~iASas~D~TV~--d~~~~~-------~l-~gh~~~v~~V~FsPdg-------~~~~~   69 (588)
T 2j04_A           13 EFEDWKNNLTWARD------GTLYLTTFPDISIG--QPKYAK-------DI-NCNSKNLFHVKEFPLE-------FENKL   69 (588)
T ss_dssp             CCSSSSCCEEECTT------SCEEEECSSSEEEE--EECCCS-------CC-SSBGGGTEEEEEECCC-------CCCTT
T ss_pred             HhhccEEEEEECCC------CCEEEEEcCCceee--cccccc-------ee-cCCCccEEEEEECCCC-------CcceE
Confidence            34578999999997      68999999999999  644332       22 4699999999999998       56666


Q ss_pred             EEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCcc-----CeeEEEEcC
Q 018675           99 CIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ-----DVKMVQWHP  173 (352)
Q Consensus        99 ~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~-----~v~~~~~~~  173 (352)
                      .+|+....   ....+ +|...|.+++|+|+|.+|++++.||.|++||...     ++..+. |..     .+.+++|+|
T Consensus        70 ~~~~~~~~---~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSP  139 (588)
T 2j04_A           70 DFELAQQN---GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNP  139 (588)
T ss_dssp             TTSCCCSS---CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECS
T ss_pred             EEEeCCCc---eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcC
Confidence            66653221   12222 4578899999999999999999999999999532     445555 554     499999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCC--CceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC
Q 018675          174 TMDVLFSCSYDNTIKVWWAEDTDSD--NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG  251 (352)
Q Consensus       174 ~~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (352)
                      ++++|++|+.||+|++|++......  .+..+.++.....+|..+|.+++|+|+|  +++++.|+.|++|+++.....  
T Consensus       140 DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~--  215 (588)
T 2j04_A          140 IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ--  215 (588)
T ss_dssp             SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC--
T ss_pred             CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc--
Confidence            9999999999999999997653210  1123444443445789999999999999  888999999999997532210  


Q ss_pred             CCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEe--cCC
Q 018675          252 DGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW--SPG  329 (352)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--sp~  329 (352)
                            .....+...|...|.+++|+ +.++++++ +++|++|+....         .......+|...|+.++|  +|+
T Consensus       216 ------~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~---------~~~~~~~gh~~~V~~va~~~s~d  278 (588)
T 2j04_A          216 ------PVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNY---------SISSLKTGSLENFHIIPLNHEKE  278 (588)
T ss_dssp             ------CCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTT---------EEEEEECSCCSCCCEEEETTCSS
T ss_pred             ------cceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCC---------eEEEEEcCCCceEEEEEeeeCCC
Confidence                  01122333466789999998 67888887 699999976532         111222379999999999  999


Q ss_pred             CcceEEEecCCCeEEEEeec
Q 018675          330 ERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       330 ~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      +. .|+++++||+ |+|...
T Consensus       279 ~~-~La~a~edG~-klw~~d  296 (588)
T 2j04_A          279 ST-ILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CE-EEEECSSCEE-EEEESS
T ss_pred             CC-EEEEEcCCCC-EEEeec
Confidence            85 6889999999 999863

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2e-31  Score=243.82  Aligned_cols=282  Identities=28%  Similarity=0.539  Sum_probs=219.1

Q ss_pred             eeeeecCCccce-EEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           13 EIQTLEGHTDRV-WSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        13 ~~~~~~gH~~~V-~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ....+.||.+.| +|+.++        ++++++|+.||+|++|+..+++....    + ..|...|.+++|+  ++.+++
T Consensus       110 ~~~~l~~h~~~v~~~~~~~--------g~~l~sg~~dg~i~vwd~~~~~~~~~----~-~~h~~~v~~~~~~--~~~l~s  174 (445)
T 2ovr_B          110 SPKVLKGHDDHVITCLQFC--------GNRIVSGSDDNTLKVWSAVTGKCLRT----L-VGHTGGVWSSQMR--DNIIIS  174 (445)
T ss_dssp             CCEEEECSTTSCEEEEEEE--------TTEEEEEETTSCEEEEETTTCCEEEE----C-CCCSSCEEEEEEE--TTEEEE
T ss_pred             eeEEecccCCCcEEEEEEc--------CCEEEEEECCCcEEEEECCCCcEEEE----E-cCCCCCEEEEEec--CCEEEE
Confidence            456788999975 566553        36899999999999999987653322    2 3588999999997  679999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      |+.|++|++||..++  .+...+.+|...|.++.|+  ++.+++|+.|++|++||+..+.   ++..+.+|...+.++.+
T Consensus       175 ~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~  247 (445)
T 2ovr_B          175 GSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ---CLHVLMGHVAAVRCVQY  247 (445)
T ss_dssp             EETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC---EEEEEECCSSCEEEEEE
T ss_pred             EeCCCeEEEEECCcC--cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc---EEEEEcCCcccEEEEEE
Confidence            999999999998776  4567788999999999995  5789999999999999997654   45667789999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG  251 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (352)
                        ++..+++++.|+.|++|+....     .....+    .+|...|.++.|  ++.++++++.||.|++||++..+    
T Consensus       248 --~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~----~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~----  310 (445)
T 2ovr_B          248 --DGRRVVSGAYDFMVKVWDPETE-----TCLHTL----QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN----  310 (445)
T ss_dssp             --CSSCEEEEETTSCEEEEEGGGT-----EEEEEE----CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC----
T ss_pred             --CCCEEEEEcCCCEEEEEECCCC-----cEeEEe----cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC----
Confidence              6778999999999999987543     233333    368889999999  78899999999999999985422    


Q ss_pred             CCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCc
Q 018675          252 DGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER  331 (352)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  331 (352)
                             ....+. .|...+.++.++ +.++++++.|+.+++|+......     . ..+.....|...|++++|++   
T Consensus       311 -------~~~~~~-~~~~~v~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~-----~-~~~~~~~~~~~~v~~~~~~~---  372 (445)
T 2ovr_B          311 -------CIHTLT-GHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQC-----L-QTLQGPNKHQSAVTCLQFNK---  372 (445)
T ss_dssp             -------EEEEEC-CCCSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCE-----E-EEECSTTSCSSCEEEEEECS---
T ss_pred             -------EEEEEc-CCcccEEEEEEe-CCEEEEEeCCCeEEEEECCCCcE-----E-EEEccCCCCCCCEEEEEECC---
Confidence                   112222 355567777764 45899999999999997643211     1 11112234889999999974   


Q ss_pred             ceEEEecCCCeEEEEeeccC
Q 018675          332 RLLASASDDGMIKIWELANT  351 (352)
Q Consensus       332 ~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      .+|++++.||.|++|++..+
T Consensus       373 ~~l~s~~~dg~v~iwd~~~~  392 (445)
T 2ovr_B          373 NFVITSSDDGTVKLWDLKTG  392 (445)
T ss_dssp             SEEEEEETTSEEEEEETTTC
T ss_pred             CEEEEEeCCCeEEEEECCCC
Confidence            36889999999999998753

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.5e-34  Score=254.81  Aligned_cols=263  Identities=17%  Similarity=0.275  Sum_probs=197.3

Q ss_pred             eecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe
Q 018675           73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE  152 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~  152 (352)
                      +..+|++++|+|++++|++|+.|+.|++|+..++...+...+.+|...|.+++|+|++++|++++.|++|++||+..+..
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~   89 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT   89 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence            56789999999999999999999999999988765456777889999999999999999999999999999999876542


Q ss_pred             eEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE
Q 018675          153 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                      ......+.+|...|.+++|+|++..|++++.|+.|++|++.....  +.....+.   ..|...|.+++|+|++.+|+++
T Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~---~~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND--WWVSKHLK---RPLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------CCCCEEEC---SSCCSCEEEEEECTTSSEEEEE
T ss_pred             eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc--ceeeeEee---cccCCCeEEEEEcCCCCEEEEE
Confidence            334556778999999999999999999999999999998765321  11122222   2388999999999999999999


Q ss_pred             eCCCcEEEEcCCccccccCCCCc-------cceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccC
Q 018675          233 SDDLTIKIWGADITRMQSGDGYA-------SWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDG  304 (352)
Q Consensus       233 ~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~  304 (352)
                      +.|+.|++||++...........       .......+  .|...+.+++|++++ ++++++.|+.+++|+......   
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~---  239 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ---  239 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS---
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC---
Confidence            99999999998533221111001       11112222  577889999999976 799999999999997654321   


Q ss_pred             cccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       305 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                        ....+....+|...|++++|+|+++ +|++++.|+.+ +|+..
T Consensus       240 --~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          240 --PPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             --CEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EECCC
T ss_pred             --cceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEEeC
Confidence              1112345678999999999999986 67888877766 66543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=9.6e-33  Score=239.06  Aligned_cols=221  Identities=27%  Similarity=0.528  Sum_probs=175.5

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC--CCEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS--GKLLA   90 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~   90 (352)
                      .+.+|.+|.+.|++++|+|..    .+.+|+|||.|++|++|++.++..  .... ....|...|.+++|+|+  |++|+
T Consensus        45 ~~~~l~gH~~~V~~v~~s~~~----~g~~l~s~s~D~~v~iWd~~~~~~--~~~~-~~~~h~~~v~~v~~~p~~~g~~l~  117 (297)
T 2pm7_B           45 LIDTLTGHEGPVWRVDWAHPK----FGTILASCSYDGKVMIWKEENGRW--SQIA-VHAVHSASVNSVQWAPHEYGPMLL  117 (297)
T ss_dssp             CCEEECCCSSCEEEEEECCGG----GCSEEEEEETTTEEEEEEBSSSCB--CCCE-EECCCSSCEEEEEECCGGGCSEEE
T ss_pred             EEEEEccccCCeEEEEecCCC----cCCEEEEEcCCCEEEEEEcCCCce--EEEE-EeecCCCceeEEEeCcCCCCcEEE
Confidence            456789999999999998631    146899999999999999876531  1111 12358889999999997  89999


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCC-------------CcEEEEeeCCCcEEEEecCCCC-eeEEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-------------GTLLATCGRDKSVWIWEVMPGN-EFECV  156 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-------------~~~l~s~~~d~~v~vwd~~~~~-~~~~~  156 (352)
                      +|+.|+++++||...+.......+.+|...|.+++|+|+             +.+|++|+.|++|++||+..+. .....
T Consensus       118 s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~  197 (297)
T 2pm7_B          118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE  197 (297)
T ss_dssp             EEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred             EEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE
Confidence            999999999999876532223566789999999999996             4689999999999999987544 23355


Q ss_pred             EEeecCccCeeEEEEcCCC---CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe
Q 018675          157 SVLQGHAQDVKMVQWHPTM---DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS  233 (352)
Q Consensus       157 ~~~~~h~~~v~~~~~~~~~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~  233 (352)
                      ..+.+|...|.+++|+|++   .+|++++.|+.|++|++..... .+.. ..+  ...+|...|++++|+|++++|++++
T Consensus       198 ~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~-~~~~-~~~--~~~~~~~~v~~~~~s~~g~~las~~  273 (297)
T 2pm7_B          198 STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG-PWKK-TLL--KEEKFPDVLWRASWSLSGNVLALSG  273 (297)
T ss_dssp             EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-CCEE-EES--SSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC-ccce-eee--ecccCCCcEEEEEECCCCCEEEEEc
Confidence            6788999999999999984   7899999999999998765321 1111 111  1235788999999999999999999


Q ss_pred             CCCcEEEEcCC
Q 018675          234 DDLTIKIWGAD  244 (352)
Q Consensus       234 ~dg~i~iwd~~  244 (352)
                      .||+|++|+.+
T Consensus       274 ~D~~v~lw~~~  284 (297)
T 2pm7_B          274 GDNKVTLWKEN  284 (297)
T ss_dssp             TTSCEEEEEEC
T ss_pred             CCCcEEEEEEC
Confidence            99999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-34  Score=262.83  Aligned_cols=212  Identities=11%  Similarity=0.075  Sum_probs=150.9

Q ss_pred             CccceEEEEEccCC-CC---------------------CCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecce
Q 018675           20 HTDRVWSLAWKPTA-GV---------------------DGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTV   77 (352)
Q Consensus        20 H~~~V~~i~~~p~~-~~---------------------~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v   77 (352)
                      +.+.|++|+|+|+. +.                     .+.++.|+|++.|++|+||++.++.........+ ..|.+.|
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l-~~~~~~V  210 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI-VHSFGEV  210 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE-EECCCSE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE-EecCCcE
Confidence            57899999999974 10                     0112245557789999999987654322111111 2356889


Q ss_pred             EEEEECCC------CCEEEEEeCCCcEEEEEccCCce---------eeeEeeccccCCeeEEEECCCCcEEEEeeCCCcE
Q 018675           78 RSCAWSPS------GKLLATASFDATTCIWEDVGGDY---------ECVATLEGHENEVKSVSWNASGTLLATCGRDKSV  142 (352)
Q Consensus        78 ~~~~~s~~------~~~l~s~~~d~~i~i~~~~~~~~---------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v  142 (352)
                      .+++|+|+      +.+||+++.|++|++|+...+..         .+...+.+|...|++++|+++ ..|++|+.|++|
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV  289 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFV  289 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEE
T ss_pred             EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEE
Confidence            99999996      57999999999999999865421         123467789999999999986 489999999999


Q ss_pred             EEEecCCCCeeEEEEEeecCccCeeEE--EEcCCC-CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCc--ccE
Q 018675          143 WIWEVMPGNEFECVSVLQGHAQDVKMV--QWHPTM-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS--STI  217 (352)
Q Consensus       143 ~vwd~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~--~~i  217 (352)
                      ++||+..+..  +...+.+|...|+++  .|+|++ .+|++++.|++|++||+...     .+...+.    +|.  ..|
T Consensus       290 ~lWD~~~~~~--~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~-----~~~~~~~----~~~~~~~v  358 (524)
T 2j04_B          290 AEFDLTDPEV--PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI-----ATTKTTV----SRFRGSNL  358 (524)
T ss_dssp             EEEETTBCSS--CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH-----HHHCEEE----EECSCCSC
T ss_pred             EEEECCCCCC--ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC-----Ccccccc----cccccCcc
Confidence            9999975421  234567899999999  567877 89999999999999987542     1111221    232  247


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          218 WALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       218 ~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      .+++|+|++..+++++.|++|++||++
T Consensus       359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~  385 (524)
T 2j04_B          359 VPVVYCPQIYSYIYSDGASSLRAVPSR  385 (524)
T ss_dssp             CCEEEETTTTEEEEECSSSEEEEEETT
T ss_pred             cceEeCCCcCeEEEeCCCCcEEEEECc
Confidence            889999999999999999999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.9e-31  Score=261.37  Aligned_cols=301  Identities=21%  Similarity=0.302  Sum_probs=224.3

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..+.++.+|...|++++|+|+      +++|++++.|++|++|++.++.....    + ..|...|++++|+|+++.|++
T Consensus        46 ~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~dg~i~vw~~~~~~~~~~----~-~~~~~~v~~~~~s~~~~~l~~  114 (814)
T 3mkq_A           46 VEVRSIQVTETPVRAGKFIAR------KNWIIVGSDDFRIRVFNYNTGEKVVD----F-EAHPDYIRSIAVHPTKPYVLS  114 (814)
T ss_dssp             EEEEEEECCSSCEEEEEEEGG------GTEEEEEETTSEEEEEETTTCCEEEE----E-ECCSSCEEEEEECSSSSEEEE
T ss_pred             ceEEEEecCCCcEEEEEEeCC------CCEEEEEeCCCeEEEEECCCCcEEEE----E-ecCCCCEEEEEEeCCCCEEEE
Confidence            455678899999999999997      57999999999999999987754322    1 348899999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      ++.|+.+++|+..++. .....+.+|...|.+++|+| ++..|++++.|++|++||+..+....  .....+...+.+++
T Consensus       115 ~~~dg~i~vw~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~--~~~~~~~~~v~~~~  191 (814)
T 3mkq_A          115 GSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF--TLTTGQERGVNYVD  191 (814)
T ss_dssp             EETTSEEEEEEGGGTS-EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE--EEECCCTTCCCEEE
T ss_pred             EcCCCEEEEEECCCCc-eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee--EEecCCCCCEEEEE
Confidence            9999999999987653 34567788999999999999 88899999999999999986554322  22233447899999


Q ss_pred             EcC--CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccc
Q 018675          171 WHP--TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM  248 (352)
Q Consensus       171 ~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~  248 (352)
                      |+|  ++.++++++.|+.|++|+....     .....+    .+|...|.+++|+|++.++++++.||.|++||+...+ 
T Consensus       192 ~~~~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-  261 (814)
T 3mkq_A          192 YYPLPDKPYMITASDDLTIKIWDYQTK-----SCVATL----EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK-  261 (814)
T ss_dssp             ECCSTTCCEEEEECTTSEEEEEETTTT-----EEEEEE----ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS-
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCC-----cEEEEE----cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-
Confidence            999  8999999999999999987543     233333    2688899999999999999999999999999875321 


Q ss_pred             ccCCCCccceeeEEeecccCcceEEEEecCCce--EEecCCCCeEEEEEccCCccc------------------------
Q 018675          249 QSGDGYASWRHLCTISGYHDRTIFSVHWSREGI--IASGAADDSVQFFVESKDDLI------------------------  302 (352)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~s~~~d~~v~~~~~~~~~~~------------------------  302 (352)
                                ....+ ..+...+.+++|++++.  +++.+.++.+.+|........                        
T Consensus       262 ----------~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  330 (814)
T 3mkq_A          262 ----------VEKTL-NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFT  330 (814)
T ss_dssp             ----------EEEEE-CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEE
T ss_pred             ----------EEEEe-ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeee
Confidence                      12222 23556788999998863  344445566666654321100                        


Q ss_pred             ----------cCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          303 ----------DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       303 ----------~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                                ..............|...+.+++|+|+++ ++++++ |+.+.+|++.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~la~~~-~~~~~i~~~~  385 (814)
T 3mkq_A          331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR-FVTVVG-DGEYVIYTAL  385 (814)
T ss_dssp             EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS-EEEEEE-TTEEEEEETT
T ss_pred             eecccccccccCccceeeeecCCCCccCCceeEECCCCC-EEEEec-CCEEEEEECc
Confidence                      00000000111234566788999999886 566666 8889998864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1e-31  Score=239.30  Aligned_cols=261  Identities=18%  Similarity=0.318  Sum_probs=205.3

Q ss_pred             ceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC
Q 018675           72 MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~  151 (352)
                      .|..+|++++|+|++++|++++.|+.|++|+..+++......+.+|...|.+++|+|++++|++++.|+.|++||+..+.
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   85 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   85 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence            47889999999999999999999999999998877655677888999999999999999999999999999999986543


Q ss_pred             eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                       ......+..|...+.+++|+|++.++++++.|+.|++|++.....  +.....   ...+|...|.+++|+|++.+|++
T Consensus        86 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C           86 -WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--WWVCKH---IKKPIRSTVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             -EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--EEEEEE---ECTTCCSCEEEEEECTTSSEEEE
T ss_pred             -eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--ceeeee---eecccCCCeeEEEEcCCCCEEEE
Confidence             223344567888999999999999999999999999998765321  111222   22468889999999999999999


Q ss_pred             EeCCCcEEEEcCCccccccCCC-------CccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCcccc
Q 018675          232 CSDDLTIKIWGADITRMQSGDG-------YASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID  303 (352)
Q Consensus       232 ~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~  303 (352)
                      ++.||.|++||++.........       .........+. .|...+.++.|++++ ++++++.|+.+++|+....    
T Consensus       160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----  234 (372)
T 1k8k_C          160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK----  234 (372)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT----
T ss_pred             EcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC----
Confidence            9999999999975322111100       00111222222 467789999999876 8999999999999976432    


Q ss_pred             CcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       304 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                           ..+.....|...|++++|+|+++ +|+++ .|+.|++|++..
T Consensus       235 -----~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          235 -----MAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             -----TEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEET
T ss_pred             -----ceeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccC
Confidence                 22344567888999999999986 66655 899999999875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.2e-32  Score=240.56  Aligned_cols=220  Identities=25%  Similarity=0.535  Sum_probs=175.0

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC--CCEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS--GKLLA   90 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~   90 (352)
                      .+.+|.||.+.|++++|+|..    .+.+|+|||.|++|++|++.++..  ..... ...|...|++++|+|+  +.+|+
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~----~~~~l~s~s~D~~v~iWd~~~~~~--~~~~~-~~~h~~~V~~v~~~p~~~g~~la  121 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPM----YGNILASCSYDRKVIIWREENGTW--EKSHE-HAGHDSSVNSVCWAPHDYGLILA  121 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGG----GSSCEEEEETTSCEEEECCSSSCC--CEEEE-ECCCSSCCCEEEECCTTTCSCEE
T ss_pred             EEEEEcCCCccEEEEEeCCCC----CCCEEEEEECCCEEEEEECCCCcc--eEEEE-ccCCCCceEEEEECCCCCCcEEE
Confidence            356789999999999997631    146899999999999999876421  11111 2358899999999998  78999


Q ss_pred             EEeCCCcEEEEEccCCc-eeeeEeeccccCCeeEEEECCC-----------------CcEEEEeeCCCcEEEEecCCCCe
Q 018675           91 TASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNAS-----------------GTLLATCGRDKSVWIWEVMPGNE  152 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~-----------------~~~l~s~~~d~~v~vwd~~~~~~  152 (352)
                      +|+.|++|++|+...+. ......+.+|...|.+++|+|+                 +.+|++|+.|++|++||+.....
T Consensus       122 sgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~  201 (316)
T 3bg1_A          122 CGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ  201 (316)
T ss_dssp             EECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC
T ss_pred             EEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc
Confidence            99999999999986542 2334556789999999999997                 46899999999999999865544


Q ss_pred             eEEEEEeecCccCeeEEEEcCCC----CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE
Q 018675          153 FECVSVLQGHAQDVKMVQWHPTM----DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK  228 (352)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~~~~----~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~  228 (352)
                      ..+...+.+|...|.+++|+|++    .+|++++.|+.|++|++.......+. ...+    .+|...|++++|+|++++
T Consensus       202 ~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~-~~~~----~~~~~~v~~v~~sp~g~~  276 (316)
T 3bg1_A          202 WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS-PKLL----HKFNDVVWHVSWSITANI  276 (316)
T ss_dssp             EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCB-CCEE----EECSSCEEEEEECTTTCC
T ss_pred             cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchh-hhhh----hcCCCcEEEEEEcCCCCE
Confidence            45667788999999999999986    78999999999999987652211111 1111    247789999999999999


Q ss_pred             EEEEeCCCcEEEEcCC
Q 018675          229 LVSCSDDLTIKIWGAD  244 (352)
Q Consensus       229 l~s~~~dg~i~iwd~~  244 (352)
                      |++++.||+|++|+..
T Consensus       277 las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          277 LAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEESSSCEEEEEEC
T ss_pred             EEEEcCCCeEEEEEEC
Confidence            9999999999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.1e-31  Score=236.27  Aligned_cols=262  Identities=15%  Similarity=0.121  Sum_probs=187.9

Q ss_pred             eecCCccceEEEEEccCCCC---CCCccEEEEeeCCCeEEEEecCCCceeeeeeeee----ecceecceEEEEECCCCCE
Q 018675           16 TLEGHTDRVWSLAWKPTAGV---DGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL----EEMHTRTVRSCAWSPSGKL   88 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~---~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~----~~~h~~~v~~~~~s~~~~~   88 (352)
                      +|.+|.+.|.++++.++.-.   ......+++++.|+++|+|+..............    ...+...+++++|||||++
T Consensus        68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~  147 (365)
T 4h5i_A           68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV  147 (365)
T ss_dssp             ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred             EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence            57789999999988653100   0001223344568899999876654332221111    1123456899999999999


Q ss_pred             EEEEe--CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCe
Q 018675           89 LATAS--FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV  166 (352)
Q Consensus        89 l~s~~--~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v  166 (352)
                      +++++  .|++|+|||..++.  ++..+. |.+.|.+++|+|+|++|++++.|+ +.+|+...+... .......|...+
T Consensus       148 la~as~~~d~~i~iwd~~~~~--~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~-~~~~~~~~~~~v  222 (365)
T 4h5i_A          148 AAIASSKVPAIMRIIDPSDLT--EKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCI-ARKTDFDKNWSL  222 (365)
T ss_dssp             EEEEESCSSCEEEEEETTTTE--EEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEE-EEECCCCTTEEE
T ss_pred             EEEEECCCCCEEEEeECCCCc--EEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcce-eeeecCCCCCCE
Confidence            87554  78999999987764  445554 778999999999999999998665 556665544432 223456788889


Q ss_pred             eEEEEcCCCCEEEEEeCCC----cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEc
Q 018675          167 KMVQWHPTMDVLFSCSYDN----TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG  242 (352)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~----~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd  242 (352)
                      .+++|+|++..+++++.|+    .++.|+......   ...  ......+|...|++++|+|+|++||+|+.|++|+|||
T Consensus       223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~---~~~--~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd  297 (365)
T 4h5i_A          223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT---SVL--RSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVK  297 (365)
T ss_dssp             EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE---EEE--EEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EEEEEcCCCCEEEEEecCCcceeEEeeccccccee---cce--eeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEE
Confidence            9999999999999999887    577786543211   111  1112236888999999999999999999999999999


Q ss_pred             CCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccC
Q 018675          243 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK  298 (352)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~  298 (352)
                      ++..           +.+..+...|...|.+++|+|++ +|++++.|++|++|+...
T Consensus       298 ~~~~-----------~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          298 LKDL-----------SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TTTT-----------EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCC-----------cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            7532           23334445688899999999987 799999999999998754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.1e-30  Score=226.77  Aligned_cols=272  Identities=23%  Similarity=0.311  Sum_probs=195.3

Q ss_pred             EEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC-CCEEEEEeCCCcEEEEEccCCc---eeeeEeecccc
Q 018675           43 ASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGD---YECVATLEGHE  118 (352)
Q Consensus        43 ~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~i~~~~~~~---~~~~~~~~~h~  118 (352)
                      .+|...|+-.+|-.....+.......+ +.|++.|++++|+|+ +++|+||+.|++|++||....+   ..+...+.+|.
T Consensus         8 ~~g~d~g~~~~~~~~~~~~~~~l~~tL-~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~   86 (340)
T 4aow_A            8 SSGVDLGTENLYFQSMMTEQMTLRGTL-KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS   86 (340)
T ss_dssp             ------------------CEEEEEEEE-CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS
T ss_pred             ccccCCCCccEEEEEccCCceEEEEEE-CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC
Confidence            344445665554322211112233333 469999999999997 6899999999999999976532   23456788999


Q ss_pred             CCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCC
Q 018675          119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD  198 (352)
Q Consensus       119 ~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~  198 (352)
                      ..|.+++|+|++++|++++.|+.|++|+.....   .......+...+....++|++..+++++.|+.+++|+.....  
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~--  161 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT---TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC--  161 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--
T ss_pred             CCEEEEEECCCCCEEEEEcccccceEEeecccc---eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc--
Confidence            999999999999999999999999999986543   334455667788889999999999999999999999764321  


Q ss_pred             CceeEeeeeccCCCCcccEEEEEEcCCC--CEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEe
Q 018675          199 NWHCVQTISESNNGHSSTIWALSFNAKG--DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW  276 (352)
Q Consensus       199 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  276 (352)
                            .......+|...+..++|++++  .++++++.|+.|++||++..+           ....+ ..|...+.++++
T Consensus       162 ------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-----------~~~~~-~~h~~~v~~~~~  223 (340)
T 4aow_A          162 ------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-----------LKTNH-IGHTGYLNTVTV  223 (340)
T ss_dssp             ------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-----------EEEEE-CCCSSCEEEEEE
T ss_pred             ------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-----------eeeEe-cCCCCcEEEEEE
Confidence                  1112334788999999998864  578899999999999975322           22222 246778999999


Q ss_pred             cCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          277 SREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       277 ~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +|++ ++++++.|+.+++|+.....         .+... .+...|++++|+|++.  +++++.|+.|+|||+..
T Consensus       224 s~~~~~l~s~s~Dg~i~iwd~~~~~---------~~~~~-~~~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~  286 (340)
T 4aow_A          224 SPDGSLCASGGKDGQAMLWDLNEGK---------HLYTL-DGGDIINALCFSPNRY--WLCAATGPSIKIWDLEG  286 (340)
T ss_dssp             CTTSSEEEEEETTCEEEEEETTTTE---------EEEEE-ECSSCEEEEEECSSSS--EEEEEETTEEEEEETTT
T ss_pred             CCCCCEEEEEeCCCeEEEEEeccCc---------eeeee-cCCceEEeeecCCCCc--eeeccCCCEEEEEECCC
Confidence            9976 89999999999999765321         12222 2446799999999764  45778899999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.7e-31  Score=253.35  Aligned_cols=247  Identities=26%  Similarity=0.402  Sum_probs=196.7

Q ss_pred             cceecceEEEEECCCC-CEEEEEeCCCcEEEEEccCCc---eeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEe
Q 018675           71 EMHTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGD---YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE  146 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~i~~~~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd  146 (352)
                      ..|.+.|++++|+|++ ++|++|+.|++|++|+.....   ......+.+|...|++++|+|++++|++|+.|++|++||
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd  458 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD  458 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            4699999999999875 799999999999999975432   123456789999999999999999999999999999999


Q ss_pred             cCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC
Q 018675          147 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG  226 (352)
Q Consensus       147 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~  226 (352)
                      +..+   .+...+.+|...|.+++|+|++..|++++.|+.|++|+....      +...+.....+|...|.+++|+|++
T Consensus       459 ~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~------~~~~~~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          459 LAAG---VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE------CKYTISEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             TTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC------EEEEECSSTTSCSSCEEEEEECSCS
T ss_pred             CCCC---cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC------cceeeccCCCCCCCcEEEEEEeCCC
Confidence            8755   345677899999999999999999999999999999975432      2223333445799999999999986


Q ss_pred             --CEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCcccc
Q 018675          227 --DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID  303 (352)
Q Consensus       227 --~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~  303 (352)
                        .++++++.|++|++||++..+           ....+ ..|...+.++++++++ ++++++.|+.|++|+.....   
T Consensus       530 ~~~~l~s~s~d~~v~vwd~~~~~-----------~~~~~-~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~---  594 (694)
T 3dm0_A          530 LQPTIVSASWDKTVKVWNLSNCK-----------LRSTL-AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK---  594 (694)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCC-----------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE---
T ss_pred             CcceEEEEeCCCeEEEEECCCCc-----------EEEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---
Confidence              689999999999999975321           11222 3477889999999976 89999999999999764321   


Q ss_pred             CcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       304 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                            .+... .+...|++++|+|++. +|+ ++.|+.|+|||+..
T Consensus       595 ------~~~~~-~~~~~v~~~~~sp~~~-~l~-~~~~~~i~iwd~~~  632 (694)
T 3dm0_A          595 ------KLYSL-EANSVIHALCFSPNRY-WLC-AATEHGIKIWDLES  632 (694)
T ss_dssp             ------EEECC-BCSSCEEEEEECSSSS-EEE-EEETTEEEEEETTT
T ss_pred             ------eEEEe-cCCCcEEEEEEcCCCc-EEE-EEcCCCEEEEECCC
Confidence                  12222 2446799999999875 554 45577899999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.8e-32  Score=245.18  Aligned_cols=259  Identities=13%  Similarity=0.118  Sum_probs=184.3

Q ss_pred             ceecceEEEEECC-CCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCC
Q 018675           72 MHTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMP  149 (352)
Q Consensus        72 ~h~~~v~~~~~s~-~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~  149 (352)
                      .|...|++++|+| ++++||+|+.||+|+|||..+++......+.+|.+.|++++|+| ++++|++|+.|++|++||+..
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~  196 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG  196 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence            3677899999999 56799999999999999987766555666779999999999998 688999999999999999864


Q ss_pred             CCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-E
Q 018675          150 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-K  228 (352)
Q Consensus       150 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~  228 (352)
                      . ..........+...+.+++|+|++.+|++|+.|+.|++|++....      +.    ...+|...|.+++|+|++. +
T Consensus       197 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~------~~----~~~~h~~~v~~v~~~p~~~~~  265 (435)
T 4e54_B          197 N-ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE------LW----NLRMHKKKVTHVALNPCCDWF  265 (435)
T ss_dssp             C-EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB------CC----CSBCCSSCEEEEEECTTCSSE
T ss_pred             C-ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce------eE----EEecccceEEeeeecCCCceE
Confidence            3 222222222334457889999999999999999999999875321      11    2347999999999999876 6


Q ss_pred             EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCccc
Q 018675          229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSY  307 (352)
Q Consensus       229 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~  307 (352)
                      |++|+.|+.|++||++..+....         ......|...|.+++|++++ ++++++.|+.+++|+............
T Consensus       266 ~~s~s~d~~v~iwd~~~~~~~~~---------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~  336 (435)
T 4e54_B          266 LATASVDQTVKIWDLRQVRGKAS---------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP  336 (435)
T ss_dssp             EEEEETTSBCCEEETTTCCSSSC---------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred             EEEecCcceeeEEecccccccce---------EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence            88999999999999864322110         00112367789999999876 899999999999998764332111000


Q ss_pred             ce--------eeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          308 KM--------LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       308 ~~--------~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +.        .+.........+..+++++++..+++++..++.|++|+...
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~  387 (435)
T 4e54_B          337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS  387 (435)
T ss_dssp             CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred             ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence            00        00000011223444555555544444445567899999865

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-31  Score=227.47  Aligned_cols=241  Identities=22%  Similarity=0.348  Sum_probs=197.8

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCC
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG  150 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~  150 (352)
                      ..|...|++++| |++++|++|+.|+.+++|+..++  .....+..|...|.+++|+|++.+|++++.|+.+++|++...
T Consensus        15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~   91 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ--WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT   91 (313)
T ss_dssp             CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS--EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred             hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC--EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence            458999999999 99999999999999999998665  345567789999999999999999999999999999998765


Q ss_pred             CeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcC-CCCEE
Q 018675          151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA-KGDKL  229 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l  229 (352)
                      .....+..+.+|...+.++.|  ++..+++++.|+.|++|+..       .....+    ..|...+.++.|+| ++.++
T Consensus        92 ~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~-------~~~~~~----~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           92 SGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG-------SLVYNL----QAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             TTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-------EEEEEE----ECCSSCEEEEEEEETTTTEE
T ss_pred             CCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC-------cEEEec----ccCCCceeEEEEccCCCCEE
Confidence            544556667889999999999  46789999999999999711       122222    25888999999988 89999


Q ss_pred             EEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccce
Q 018675          230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKM  309 (352)
Q Consensus       230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~  309 (352)
                      ++++.||.|++||..             .....+...+...+.++.+++++.+++++.|+.+++|+....         .
T Consensus       159 ~~~~~d~~i~i~d~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~---------~  216 (313)
T 3odt_A          159 LTASADKTIKLWQND-------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG---------D  216 (313)
T ss_dssp             EEEETTSCEEEEETT-------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC---------C
T ss_pred             EEEECCCCEEEEecC-------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch---------h
Confidence            999999999999843             122233334677899999999988999999999999976532         2


Q ss_pred             eeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       310 ~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      .+....+|...|++++|+|++ . |++++.||.|++||+...
T Consensus       217 ~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          217 VLRTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             EEEEEECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTTC
T ss_pred             hhhhhhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCCC
Confidence            334456899999999999988 3 679999999999998653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-30  Score=237.04  Aligned_cols=303  Identities=12%  Similarity=0.047  Sum_probs=211.0

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCc---eeeeeeeeee----------------------------
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS---RFWNCKAVLE----------------------------   70 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~---~~~~~~~~~~----------------------------   70 (352)
                      .++.+++|+|+      +.+|+++ .++.|++|+..+++   .+........                            
T Consensus         5 ~p~~~v~~s~d------g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (450)
T 2vdu_B            5 HPLQNLLTSRD------GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK   77 (450)
T ss_dssp             CCCCEEEECSS------SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------
T ss_pred             ccEEEEEecCC------CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccc
Confidence            47889999997      4555554 68899999988776   2211110000                            


Q ss_pred             ---------------------cceecceEEEEECCCCCEE-EEEeCCCcEEEEEcc--CCceeeeEeec--cccCCeeEE
Q 018675           71 ---------------------EMHTRTVRSCAWSPSGKLL-ATASFDATTCIWEDV--GGDYECVATLE--GHENEVKSV  124 (352)
Q Consensus        71 ---------------------~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~i~~~~--~~~~~~~~~~~--~h~~~v~~v  124 (352)
                                           ..|...|++++|+|++++| ++|+.|+.|++|+..  ++.  +...+.  .|...|+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~v~~~  155 (450)
T 2vdu_B           78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN--VLKLRKRFCFSKRPNAI  155 (450)
T ss_dssp             ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS--CEEEEEEEECSSCEEEE
T ss_pred             cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc--eeeeeecccCCCCceEE
Confidence                                 0233479999999999996 899999999999987  553  333443  567899999


Q ss_pred             EECCCCcEEEEeeCCCcEEEEecCCCCeeE-EEEEeecCccCeeEEEEcCC---CCEEEEEeCCCcEEEEecCCCCCCCc
Q 018675          125 SWNASGTLLATCGRDKSVWIWEVMPGNEFE-CVSVLQGHAQDVKMVQWHPT---MDVLFSCSYDNTIKVWWAEDTDSDNW  200 (352)
Q Consensus       125 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~-~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~  200 (352)
                      +|+|++.+|++++.|+.+++|++....... +...+.+|...|.+++|+|+   +.+|++++.|+.|++|++....    
T Consensus       156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~----  231 (450)
T 2vdu_B          156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF----  231 (450)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT----
T ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc----
Confidence            999999999999999999999987654332 33356789999999999999   8899999999999999876432    


Q ss_pred             eeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCcc-cee------------eEEeeccc
Q 018675          201 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYAS-WRH------------LCTISGYH  267 (352)
Q Consensus       201 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~------------~~~~~~~~  267 (352)
                       ....   ...+|...|.+++|+ ++.+|++++.|+.|++||++..+......... ...            ........
T Consensus       232 -~~~~---~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (450)
T 2vdu_B          232 -IVDK---WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII  306 (450)
T ss_dssp             -CEEE---ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred             -eeee---eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence             1222   134788999999999 99999999999999999986432110000000 000            00000012


Q ss_pred             CcceEEEEecCCc-eEEecC-CCCeEEEEEc--cCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecC----
Q 018675          268 DRTIFSVHWSREG-IIASGA-ADDSVQFFVE--SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD----  339 (352)
Q Consensus       268 ~~~i~~~~~~~~~-~~~s~~-~d~~v~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~----  339 (352)
                      ...+..+.+.+++ ++++++ .++.+++|+.  .....      ...+....+| ..|.+++|+|+ ..+++.++.    
T Consensus       307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~------l~~~~~~~~~-~~v~~~~~~~~-~~~v~~~~~~~~~  378 (450)
T 2vdu_B          307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGD------LALKQIITFP-YNVISLSAHND-EFQVTLDNKESSG  378 (450)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTC------EEEEEEEECS-SCEEEEEEETT-EEEEEECCTTCCS
T ss_pred             eEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCc------eeeccEeccC-CceEEEEecCC-cEEEEEecccCCC
Confidence            3467888998876 666666 8999999977  22110      1223344556 78999999995 334443343    


Q ss_pred             --CCeEEEEeecc
Q 018675          340 --DGMIKIWELAN  350 (352)
Q Consensus       340 --Dg~i~iw~~~~  350 (352)
                        +..|+||.+..
T Consensus       379 ~~~~~i~v~~~~~  391 (450)
T 2vdu_B          379 VQKNFAKFIEYNL  391 (450)
T ss_dssp             SCCCSEEEEEEET
T ss_pred             CCCcceEEEEEEc
Confidence              55689998753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-30  Score=232.83  Aligned_cols=270  Identities=21%  Similarity=0.300  Sum_probs=196.8

Q ss_pred             eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCC-EEEEEeCCCcEEEEEc----cCCce----eeeEeecc----
Q 018675           50 TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK-LLATASFDATTCIWED----VGGDY----ECVATLEG----  116 (352)
Q Consensus        50 ~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~i~~~----~~~~~----~~~~~~~~----  116 (352)
                      .+.+|++......     .....|...|++++|+|+++ +|++|+.|+.+++|+.    .++..    .....+..    
T Consensus        26 ~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (425)
T 1r5m_A           26 IDSSDDLDGFVKI-----LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFAL  100 (425)
T ss_dssp             --------CCCEE-----CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCC
T ss_pred             ccccccchhhhhh-----eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccc
Confidence            3456776543321     11234668999999999999 9999999999999998    66541    01222222    


Q ss_pred             ------ccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          117 ------HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW  190 (352)
Q Consensus       117 ------h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw  190 (352)
                            |.+.|++++|+|++++|++++.|+.|++||. .+   ..+..+.+|...|.+++|+|++.+|++++.|+.|++|
T Consensus       101 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw  176 (425)
T 1r5m_A          101 SASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TG---ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW  176 (425)
T ss_dssp             C------CBCEEEEEECTTSSEEEEEETTSCEEEEET-TS---CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             cccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CC---CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence                  6779999999999999999999999999993 33   3456678899999999999999999999999999999


Q ss_pred             ecCCCCCCC-----------------------ceeE-----------------e-------eeeccCCCCcccEEEEEEc
Q 018675          191 WAEDTDSDN-----------------------WHCV-----------------Q-------TISESNNGHSSTIWALSFN  223 (352)
Q Consensus       191 ~~~~~~~~~-----------------------~~~~-----------------~-------~~~~~~~~h~~~i~~l~~~  223 (352)
                      ++.......                       ...+                 .       .......+|...|.+++|+
T Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  256 (425)
T 1r5m_A          177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN  256 (425)
T ss_dssp             ETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE
T ss_pred             ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC
Confidence            875421100                       0000                 0       0000123678899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCcccc
Q 018675          224 AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLID  303 (352)
Q Consensus       224 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~  303 (352)
                      |++++|++++.||.|++||++..+.           ...+ ..+...+.++.|++++++++++.|+.+++|+....    
T Consensus       257 ~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~-~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~----  320 (425)
T 1r5m_A          257 DTNKLLLSASDDGTLRIWHGGNGNS-----------QNCF-YGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN----  320 (425)
T ss_dssp             TTTTEEEEEETTSCEEEECSSSBSC-----------SEEE-CCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT----
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCcc-----------ceEe-cCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC----
Confidence            9999999999999999999763221           1122 23567899999999889999999999999976432    


Q ss_pred             CcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          304 GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       304 ~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                           ..+.....|...|++++|+|+++ +|++++.||.|++|++..
T Consensus       321 -----~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          321 -----TLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             -----EEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHH
T ss_pred             -----cEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCC
Confidence                 23344567889999999999986 688999999999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.3e-30  Score=233.46  Aligned_cols=255  Identities=13%  Similarity=0.169  Sum_probs=192.6

Q ss_pred             cceecceEEEEECCCC-CEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecC
Q 018675           71 EMHTRTVRSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVM  148 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~  148 (352)
                      ..|...|++++|+|++ ++|++|+.|+.|++|+..++.........+|...|.+++|+| ++++|++++.|++|++||+.
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS  149 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence            3588999999999999 999999999999999988766554444457999999999999 77899999999999999987


Q ss_pred             CCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-
Q 018675          149 PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-  227 (352)
Q Consensus       149 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-  227 (352)
                      . ...........|...+.+++|+|++.++++++.|+.|++|++..      .....+    .+|...|.+++|+|++. 
T Consensus       150 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~----~~h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          150 G-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG------HEIFKE----KLHKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             S-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS------CEEEEE----ECSSSCEEEEEECSSCTT
T ss_pred             C-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC------CEEEEe----ccCCCcEEEEEECCCCCC
Confidence            4 33333333334457899999999999999999999999998732      123333    26889999999999999 


Q ss_pred             EEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC-Cc-eEEecCCCCeEEEEEccCCccccCc
Q 018675          228 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EG-IIASGAADDSVQFFVESKDDLIDGP  305 (352)
Q Consensus       228 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~s~~~d~~v~~~~~~~~~~~~~~  305 (352)
                      +|++++.|+.|++||++..+..       ......+  .|...+.++.|++ ++ ++++++.|+.+++|+..........
T Consensus       219 ~l~s~~~d~~i~iwd~~~~~~~-------~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  289 (383)
T 3ei3_B          219 LMATSSVDATVKLWDLRNIKDK-------NSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI  289 (383)
T ss_dssp             EEEEEETTSEEEEEEGGGCCST-------TCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred             EEEEEeCCCEEEEEeCCCCCcc-------cceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence            9999999999999998642110       0112222  3678899999998 65 8899999999999987543322110


Q ss_pred             ccceeeeccccc----------CcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          306 SYKMLLKKEKAH----------DMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       306 ~~~~~~~~~~~h----------~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ....  .....|          ...+..++|+|+++ +  +++.||.|+|||+..
T Consensus       290 ~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-~--s~s~d~~i~iwd~~~  339 (383)
T 3ei3_B          290 IIHP--HRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-L--LLNDKRTIDIYDANS  339 (383)
T ss_dssp             EECC--BCCCTTSCCCCCEECSSSSEEEEECBCCTT-T--CTTCCCCEEEEETTT
T ss_pred             cccc--ccccccccceEEeccCCCCceEEEecCCcc-c--ccCCCCeEEEEecCC
Confidence            0000  001112          24556688888875 3  899999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.8e-31  Score=239.89  Aligned_cols=257  Identities=16%  Similarity=0.311  Sum_probs=189.3

Q ss_pred             eecceEEEEECCCCCEEEEEeCCCcEEEEEccCCc---------eeeeEeecccc------------CCeeEEEECCCC-
Q 018675           73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD---------YECVATLEGHE------------NEVKSVSWNASG-  130 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~---------~~~~~~~~~h~------------~~v~~v~~~~~~-  130 (352)
                      +.+.|++++|+|+|++||+|+.|+.|++|+..++.         ..+...+.+|.            +.|++++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            56899999999999999999999999999976543         22466778998            889999999998 


Q ss_pred             -cEEEEeeCCCcEEEEecCCCCee------------------------------------EEEEE-eecCccCeeEEEEc
Q 018675          131 -TLLATCGRDKSVWIWEVMPGNEF------------------------------------ECVSV-LQGHAQDVKMVQWH  172 (352)
Q Consensus       131 -~~l~s~~~d~~v~vwd~~~~~~~------------------------------------~~~~~-~~~h~~~v~~~~~~  172 (352)
                       .+|++++.|++|++||+......                                    .+... ..+|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             79999999999999998542110                                    01112 35799999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCCceeEeee---eccCCCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEcCCcccc
Q 018675          173 PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI---SESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGADITRM  248 (352)
Q Consensus       173 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~h~~~i~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~  248 (352)
                      |++.+|+++ .|+.|++|++....    .....+   .....+|...|.+++|+|++ .+|++|+.||.|++||++....
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITD----RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEE----EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCC----ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence            999999998 79999999876321    111111   11234788999999999998 9999999999999999864332


Q ss_pred             ccCCCCccceeeEEeecc-----------cCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccc
Q 018675          249 QSGDGYASWRHLCTISGY-----------HDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA  316 (352)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~  316 (352)
                      ..       .....+...           +...+.+++|++++ ++++++. +.+++|+.....        ..+....+
T Consensus       262 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~--------~~~~~~~~  325 (447)
T 3dw8_B          262 CD-------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN--------RPVETYQV  325 (447)
T ss_dssp             SC-------TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS--------SCSCCEES
T ss_pred             cc-------ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc--------cccceeec
Confidence            10       001111111           12379999999987 6777777 999999875311        11222334


Q ss_pred             cCc---------------ceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          317 HDM---------------DVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       317 h~~---------------~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      |..               .+..++|+|+++ +|++++.||.|+|||+..+
T Consensus       326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          326 HEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             CGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTC
T ss_pred             cccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCC
Confidence            432               134599999986 5789999999999998653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.4e-31  Score=231.58  Aligned_cols=256  Identities=18%  Similarity=0.309  Sum_probs=192.5

Q ss_pred             cceecceEEEEECCCCCEE-EEEeC---CCcEEEEEccCCceeeeEeeccccCCeeEEEECCC---CcEEEEeeCCCcEE
Q 018675           71 EMHTRTVRSCAWSPSGKLL-ATASF---DATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS---GTLLATCGRDKSVW  143 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l-~s~~~---d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~~~l~s~~~d~~v~  143 (352)
                      ..|...|++++|+|+++.+ ++|+.   |+.+++|+..+++...... .+|...|.+++|+|+   +.+|++++.|+.|+
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~   93 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFGGNLH   93 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee-ecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence            4588999999999999654 56665   9999999988766443333 368999999999998   69999999999999


Q ss_pred             EEecCCCCeeEEEEEeecCccCeeEEEE------cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccE
Q 018675          144 IWEVMPGNEFECVSVLQGHAQDVKMVQW------HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI  217 (352)
Q Consensus       144 vwd~~~~~~~~~~~~~~~h~~~v~~~~~------~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i  217 (352)
                      +||+..+.  ..+..+.+|...|.++.|      +|++..|++++.|+.|++|++.....    ....+......+...+
T Consensus        94 iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           94 IWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD----PVANMEPVQGENKRDC  167 (357)
T ss_dssp             EECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS----CSEEECCCTTSCCCCE
T ss_pred             EEeCCCCC--ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC----cceeccccCCCCCCce
Confidence            99987654  134567789999999955      67899999999999999998765421    1122221111224488


Q ss_pred             EEEE----EcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC----CceEEecCCCC
Q 018675          218 WALS----FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR----EGIIASGAADD  289 (352)
Q Consensus       218 ~~l~----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~s~~~d~  289 (352)
                      .++.    |+|++.+|++++.||.|++||++..+.             .....+...+.++.|++    +.++++++.|+
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  234 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-------------RWETNIKNGVCSLEFDRKDISMNKLVATSLEG  234 (357)
T ss_dssp             EEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-------------EEEEECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred             EEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-------------eeecCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence            8888    788999999999999999999864321             11123567899999997    45899999999


Q ss_pred             eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       290 ~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .+++|+........    ........+|...|++++|+|+++.+|++++.||.|++|++..
T Consensus       235 ~i~i~d~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          235 KFHVFDMRTQHPTK----GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEEEEEEEEEETTT----EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             eEEEEeCcCCCccc----ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            99999765321110    1111123489999999999999875789999999999999874

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-32  Score=245.68  Aligned_cols=304  Identities=13%  Similarity=0.154  Sum_probs=205.7

Q ss_pred             eeecCCccceEEEEEccCCC----CCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC-CCCEE
Q 018675           15 QTLEGHTDRVWSLAWKPTAG----VDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP-SGKLL   89 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~----~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l   89 (352)
                      .++..|...+..+.+.|...    ..+.+..+++++      .|+... +    ....+...|...|++++|+| ++++|
T Consensus        11 ~~~~~~~~~l~~~~~~p~~~~~~~f~~~~~~~~~~~------~w~~~g-~----~~~~~~~~h~~~V~~~~~s~~~~~~l   79 (437)
T 3gre_A           11 GDVESIEKFLSTFKILPPLRDYKEFGPIQEIVRSPN------MGNLRG-K----LIATLMENEPNSITSSAVSPGETPYL   79 (437)
T ss_dssp             ---CCCGGGTTCC-CCCCGGGCGGGCCCCCCCCCCC------GGGCCC-C----EEEEECTTTTSCEEEEEEECSSSCEE
T ss_pred             CChhHHHHHhccCCCCCChhchhhcCCccccccccc------cccccc-e----EEeeeccCCCCceEEEEECCCCCCEE
Confidence            34455666666666666311    012234444443      476433 1    22233355889999999999 99999


Q ss_pred             EEEeCCCcEEEEEccC---Cc-eeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecC---CCCeeE-----EEE
Q 018675           90 ATASFDATTCIWEDVG---GD-YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM---PGNEFE-----CVS  157 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~---~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~---~~~~~~-----~~~  157 (352)
                      ++|+.|++|++||..+   +. ..+...+ +|.+.|++++|+|++++|++++.|++|++||+.   .+....     .+.
T Consensus        80 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~  158 (437)
T 3gre_A           80 ITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIR  158 (437)
T ss_dssp             EEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeE
Confidence            9999999999999755   32 1122333 589999999999999999999999999999984   332211     111


Q ss_pred             Eee--c--CccCeeEEE--EcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          158 VLQ--G--HAQDVKMVQ--WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       158 ~~~--~--h~~~v~~~~--~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                      .+.  .  +...+.++.  ++|++.++++++.|+.|++|++...     .....+..  ..|...|.+++|+|++.+|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s  231 (437)
T 3gre_A          159 KINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-----ERLQIIEN--SPRHGAVSSICIDEECCVLIL  231 (437)
T ss_dssp             EEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC-----CEEEEEEC--CGGGCCEEEEEECTTSCEEEE
T ss_pred             EEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----eeeEEEcc--CCCCCceEEEEECCCCCEEEE
Confidence            121  1  445566666  5678899999999999999987653     23333321  127889999999999999999


Q ss_pred             EeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC----Cc-eEEecCCCCeEEEEEccCCccccCcc
Q 018675          232 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR----EG-IIASGAADDSVQFFVESKDDLIDGPS  306 (352)
Q Consensus       232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~-~~~s~~~d~~v~~~~~~~~~~~~~~~  306 (352)
                      |+.||.|++||++...           ....+...+...+.++.+.+    ++ ++++++.|+.+++|+...........
T Consensus       232 ~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  300 (437)
T 3gre_A          232 GTTRGIIDIWDIRFNV-----------LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFI  300 (437)
T ss_dssp             EETTSCEEEEETTTTE-----------EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEE
T ss_pred             EcCCCeEEEEEcCCcc-----------EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEE
Confidence            9999999999986321           22222223455788886654    44 89999999999999876433211000


Q ss_pred             cc-------ee--------eecccc--cCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          307 YK-------ML--------LKKEKA--HDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       307 ~~-------~~--------~~~~~~--h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ..       ..        -....+  |...|++++|+ ++ .+|++++.||.|++||+..
T Consensus       301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          301 NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETTC
T ss_pred             cCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECCC
Confidence            00       00        001123  88899999999 55 4688999999999999865

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-32  Score=248.63  Aligned_cols=251  Identities=11%  Similarity=0.146  Sum_probs=189.3

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceec-----ceEEEEECCCCCEEEEEe
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR-----TVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~~   93 (352)
                      +|.+.|++++|+|+      ++.||+++.||+|++|+.+.      +...+ . |..     .|.+++|||||++||+|+
T Consensus        83 ~~~~~V~~vawSPd------G~~LAs~s~dg~V~iwd~~~------~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs  148 (588)
T 2j04_A           83 QPVCYPRVCKPSPI------DDWMAVLSNNGNVSVFKDNK------MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGN  148 (588)
T ss_dssp             SCSCCEEEEEECSS------SSCEEEEETTSCEEEEETTE------EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred             CCCCcEEEEEECCC------CCEEEEEeCCCcEEEEeCCc------eeeec-c-CCCccccccEEEEEEcCCCCEEEEEc
Confidence            67889999999997      57899999999999999543      11122 2 443     599999999999999999


Q ss_pred             CCCcEEEEEccCCce-----eeeEee----ccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEe-ecCc
Q 018675           94 FDATTCIWEDVGGDY-----ECVATL----EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL-QGHA  163 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~-----~~~~~~----~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~h~  163 (352)
                      .||+|++|+..++..     ..+.++    .+|.+.|.+++|+|+|  +++++.|++|++||+...........+ .+|.
T Consensus       149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~  226 (588)
T 2j04_A          149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR  226 (588)
T ss_dssp             TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred             CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence            999999999877642     134554    6788899999999999  888999999999998765422223345 3788


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEE--cCCCCEEEEEeCCCcEEEE
Q 018675          164 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF--NAKGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       164 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~--~~~~~~l~s~~~dg~i~iw  241 (352)
                      ..|.+++|+  +..+++++ ++.|++|++....      ....   ..+|...|..+.|  +|++..+++++.||+ |+|
T Consensus       227 ~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~------~~~~---~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw  293 (588)
T 2j04_A          227 RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYS------ISSL---KTGSLENFHIIPLNHEKESTILLMSNKTSY-KVL  293 (588)
T ss_dssp             SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTE------EEEE---ECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred             CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCe------EEEE---EcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence            899999999  57888887 6999999876531      1111   1269999999999  999999999999999 999


Q ss_pred             cCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcce
Q 018675          242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDV  321 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  321 (352)
                      ..+                            .+.+++++.+.+. .|+.+++|....+.          +... .+...|
T Consensus       294 ~~d----------------------------~~~~spd~~l~a~-~d~~v~lW~~~g~~----------l~~~-~~~~~I  333 (588)
T 2j04_A          294 LED----------------------------ELHVTADNIIAPY-LEKKFKKWSTIWNE----------FNNY-ETTLVI  333 (588)
T ss_dssp             ESS----------------------------SEEEECCCSSHHH-HHHHHHHTTTTTTS----------SSSS-CCEEEE
T ss_pred             eec----------------------------cEEECCCceEEEE-cCCEEEEEECCCCc----------eeee-ccceEE
Confidence            753                            0234566644444 38888888442211          1122 336779


Q ss_pred             eEEEecCCCcceEEEecC
Q 018675          322 NSVQWSPGERRLLASASD  339 (352)
Q Consensus       322 ~~~~~sp~~~~~l~s~~~  339 (352)
                      ++++|||||+ ++|+++.
T Consensus       334 ~~va~SPdG~-~lA~~~~  350 (588)
T 2j04_A          334 HGISLSPDGY-SIAIVYD  350 (588)
T ss_dssp             EEEEECTTSS-EEEEEEE
T ss_pred             EEEEECCCCC-EEEEEEe
Confidence            9999999996 6777763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.4e-30  Score=227.79  Aligned_cols=258  Identities=14%  Similarity=0.090  Sum_probs=193.4

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCc-eeeeEeeccccCCeeEEEECCCCc-EEEEeeCCCcEEEEec-
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEV-  147 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~-  147 (352)
                      ..|...|++++|+|++++|++++.|+.|++|+..++. ......+.+|...|.+++|+|+++ +|++++.|+.|++||+ 
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~   87 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence            4588999999999999999999999999999987654 122344558999999999999999 9999999999999998 


Q ss_pred             CCCCeeEEEEEeec--CccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC
Q 018675          148 MPGNEFECVSVLQG--HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK  225 (352)
Q Consensus       148 ~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~  225 (352)
                      ..+.    ...+.+  |...|.+++|+| +..+++++.|+.|++|++.................. .|...|.+++|+|+
T Consensus        88 ~~~~----~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~  161 (342)
T 1yfq_A           88 GSPS----FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-KVKNKIFTMDTNSS  161 (342)
T ss_dssp             SSSS----EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-SSCCCEEEEEECSS
T ss_pred             cCCc----eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE-eeCCceEEEEecCC
Confidence            6553    255677  999999999999 999999999999999986531100000000111111 37789999999998


Q ss_pred             CCEEEEEeCCCcEEEEcCCc-cccccCCCCccceeeEEeecccCcceEEEEecC-C-ceEEecCCCCeEEEEEccCCccc
Q 018675          226 GDKLVSCSDDLTIKIWGADI-TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-E-GIIASGAADDSVQFFVESKDDLI  302 (352)
Q Consensus       226 ~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~s~~~d~~v~~~~~~~~~~~  302 (352)
                      +  +++++.|+.|++||++. ...          ........+...+.++.+++ + .++++++.|+.+++|+.......
T Consensus       162 ~--l~~~~~d~~i~i~d~~~~~~~----------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~  229 (342)
T 1yfq_A          162 R--LIVGMNNSQVQWFRLPLCEDD----------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             E--EEEEESTTEEEEEESSCCTTC----------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             c--EEEEeCCCeEEEEECCccccc----------cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcc
Confidence            7  99999999999999864 211          01112234566789999998 5 48999999999999976543000


Q ss_pred             cCcccceeeecccc---------cCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          303 DGPSYKMLLKKEKA---------HDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       303 ~~~~~~~~~~~~~~---------h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ...   ........         |...|++++|+|+++ +|++++.||.|++||+..
T Consensus       230 ~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          230 YNS---SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             TTC---TTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTT
T ss_pred             ccc---ccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCcc
Confidence            000   01112233         455999999999986 678999999999999875

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5.7e-30  Score=227.16  Aligned_cols=272  Identities=18%  Similarity=0.335  Sum_probs=200.1

Q ss_pred             eeecceecceEEEEECCC----CCEEEEEeCCCcEEEEEccCCcee-eeEee--ccccCCeeEEEECCC----CcEEEEe
Q 018675           68 VLEEMHTRTVRSCAWSPS----GKLLATASFDATTCIWEDVGGDYE-CVATL--EGHENEVKSVSWNAS----GTLLATC  136 (352)
Q Consensus        68 ~~~~~h~~~v~~~~~s~~----~~~l~s~~~d~~i~i~~~~~~~~~-~~~~~--~~h~~~v~~v~~~~~----~~~l~s~  136 (352)
                      .+...|..+|++++|+|+    ...+++++.++.|++|+..+++.. .+...  ..|...|.+++|+|+    +.+|+++
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            344569999999999984    456666777779999998754321 12211  126678999999998    6799999


Q ss_pred             eCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcc
Q 018675          137 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS  215 (352)
Q Consensus       137 ~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~  215 (352)
                      +.|+.|++||+..+.   .+..+.+|...|.+++|+| ++.+|++++.|+.|++|++...     .....+ ....+|..
T Consensus        92 ~~dg~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~-~~~~~~~~  162 (366)
T 3k26_A           92 GSRGIIRIINPITMQ---CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-----TLVAIF-GGVEGHRD  162 (366)
T ss_dssp             ETTCEEEEECTTTCC---EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-----EEEEEE-CSTTSCSS
T ss_pred             cCCCEEEEEEchhce---EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-----eEEEEe-cccccccC
Confidence            999999999987654   4566778999999999999 8999999999999999987643     222222 12246889


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC-----------CCC--c---cceeeEEeecccCcceEEEEecCC
Q 018675          216 TIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG-----------DGY--A---SWRHLCTISGYHDRTIFSVHWSRE  279 (352)
Q Consensus       216 ~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------~~~--~---~~~~~~~~~~~~~~~i~~~~~~~~  279 (352)
                      .|.+++|+|++.+|++++.||.|++||++..+....           ...  .   ...........|...+.++.++ +
T Consensus       163 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~  241 (366)
T 3k26_A          163 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-G  241 (366)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-T
T ss_pred             ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-C
Confidence            999999999999999999999999999864321100           000  0   0000011112367788899998 6


Q ss_pred             ceEEecCCCCeEEEEEccCCccc-----cCcccceeeecccccCcceeEEEecCC--CcceEEEecCCCeEEEEeecc
Q 018675          280 GIIASGAADDSVQFFVESKDDLI-----DGPSYKMLLKKEKAHDMDVNSVQWSPG--ERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       280 ~~~~s~~~d~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .++++++.|+.+++|+.......     ........+....+|...|++++|+|+  ++ +|++++.||.|++|++..
T Consensus       242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTSCEEEEECCS
T ss_pred             CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCCcEEEEECCC
Confidence            79999999999999987543221     011112334556789999999999998  75 688999999999999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-30  Score=230.23  Aligned_cols=222  Identities=28%  Similarity=0.496  Sum_probs=180.2

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC--CCEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS--GKLL   89 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l   89 (352)
                      ..+..+.+|.+.|++++|+|+..    +.+|++++.|++|++|++.++..  .... ....|...|.+++|+|+  +++|
T Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~--~~~~-~~~~~~~~v~~~~~~~~~~~~~l  118 (379)
T 3jrp_A           46 KLIDTLTGHEGPVWRVDWAHPKF----GTILASCSYDGKVLIWKEENGRW--SQIA-VHAVHSASVNSVQWAPHEYGPLL  118 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGG----CSEEEEEETTSCEEEEEEETTEE--EEEE-EECCCSSCEEEEEECCGGGCSEE
T ss_pred             eeeeEecCCCCcEEEEEeCCCCC----CCEEEEeccCCEEEEEEcCCCce--eEee-eecCCCcceEEEEeCCCCCCCEE
Confidence            34457889999999999987521    47999999999999999987641  1111 22347889999999999  9999


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC-------------CCcEEEEeeCCCcEEEEecCCCCe-eEE
Q 018675           90 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-------------SGTLLATCGRDKSVWIWEVMPGNE-FEC  155 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-------------~~~~l~s~~~d~~v~vwd~~~~~~-~~~  155 (352)
                      ++++.|+.+++||...........+.+|...|.+++|+|             ++.+|++++.|+.|++||+..... ...
T Consensus       119 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  198 (379)
T 3jrp_A          119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  198 (379)
T ss_dssp             EEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             EEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence            999999999999987764444556778999999999999             689999999999999999875543 345


Q ss_pred             EEEeecCccCeeEEEEcCC---CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE
Q 018675          156 VSVLQGHAQDVKMVQWHPT---MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       156 ~~~~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                      ...+.+|...|.+++|+|+   +.+|++++.|+.|++|++........   ..+ .....|...|.+++|+|++.+|+++
T Consensus       199 ~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~-~~~~~~~~~v~~~~~s~~g~~l~~~  274 (379)
T 3jrp_A          199 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK---KTL-LKEEKFPDVLWRASWSLSGNVLALS  274 (379)
T ss_dssp             EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE---EEE-SSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred             EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccce---eee-eccccCCCcEEEEEEcCCCCEEEEe
Confidence            5677889999999999999   89999999999999998865422111   111 1223578899999999999999999


Q ss_pred             eCCCcEEEEcCC
Q 018675          233 SDDLTIKIWGAD  244 (352)
Q Consensus       233 ~~dg~i~iwd~~  244 (352)
                      +.||.|++|+++
T Consensus       275 ~~dg~i~iw~~~  286 (379)
T 3jrp_A          275 GGDNKVTLWKEN  286 (379)
T ss_dssp             ESSSSEEEEEEE
T ss_pred             cCCCcEEEEeCC
Confidence            999999999875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.6e-29  Score=223.01  Aligned_cols=299  Identities=12%  Similarity=0.161  Sum_probs=197.0

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE-E
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL-A   90 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~   90 (352)
                      ..+.++++|.+.|++++|+|+      +++|++|+.| .+++|+..+......       .+...+..+++.++++.+ +
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~d------g~~la~g~~~-~~~iw~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~   75 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQD------QSCLILSTLK-SFEIYNVHPVAHIMS-------QEMRHLSKVRMLHRTNYVAF   75 (355)
T ss_dssp             ---------CCCCCEEEECTT------SSEEEEECSS-EEEEEEETTEEEEEE-------EECSCCCEEEECTTSSEEEE
T ss_pred             CCccccccCCCceEEEEECCC------CCEEEEEcCC-EEEEEecCCcceeee-------eecCCeEEEEEcCCCCEEEE
Confidence            344567899999999999997      5788888766 578999876432111       122357888899988877 5


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCC-CeeEEEEEeecCccCeeEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG-NEFECVSVLQGHAQDVKMV  169 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~h~~~v~~~  169 (352)
                      +++.|+++++||..+++  ++..+. |...|.++.|+++.  ++.+ .|++|++||+... +....   +..   ....+
T Consensus        76 ~~~~d~~v~iWd~~~~~--~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~---~~~---~~~~~  143 (355)
T 3vu4_A           76 VTGVKEVVHIWDDVKKQ--DVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITD---DIR---FGGVC  143 (355)
T ss_dssp             ECSSTTEEEEEETTTTE--EEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSC---CEE---EEEEE
T ss_pred             EECCccEEEEEECCCCc--EEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEE---ecc---CCceE
Confidence            67788999999987764  344554 67799999998864  3333 4789999999765 32221   221   23345


Q ss_pred             EEcCCCCEEEE--EeCCCcEEEEecCCCCCCC-----c--eeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCc-EE
Q 018675          170 QWHPTMDVLFS--CSYDNTIKVWWAEDTDSDN-----W--HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLT-IK  239 (352)
Q Consensus       170 ~~~~~~~~l~s--~~~d~~i~iw~~~~~~~~~-----~--~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~-i~  239 (352)
                      ++++  ..++.  |+.|+.|++|++.......     .  ...........+|...|.+++|+|++.+|++|+.|++ |+
T Consensus       144 ~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~  221 (355)
T 3vu4_A          144 EFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIR  221 (355)
T ss_dssp             EEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEE
T ss_pred             EEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEE
Confidence            5666  55655  5789999999986532000     0  0000001123479999999999999999999999998 99


Q ss_pred             EEcCCccccccCCCCccceeeEEee-cccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccce-e------
Q 018675          240 IWGADITRMQSGDGYASWRHLCTIS-GYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM-L------  310 (352)
Q Consensus       240 iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~-~------  310 (352)
                      +||++..           .....+. +.|...+.+++|+|++ ++++++.|+++++|+.............. +      
T Consensus       222 iwd~~~~-----------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
T 3vu4_A          222 VFKTEDG-----------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQ  290 (355)
T ss_dssp             EEETTTC-----------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCC
T ss_pred             EEECCCC-----------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccc
Confidence            9997532           2233444 3377889999999976 79999999999999875432111000000 0      


Q ss_pred             -------eecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          311 -------LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       311 -------~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                             ......+......++|+|+++ .+++++.||.+++|++..
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~a~~~d~~-~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          291 SEWSLCNFKLSVDKHVRGCKIAWISESS-LVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             CSSCSEEEECCCCTTCCCCEEEESSSSE-EEEEETTTTEEEEEEEEE
T ss_pred             cccceeEEEeccCCCCCceEEEEeCCCC-EEEEEeCCCeEEEEEEEc
Confidence                   001112233457799999986 577899999999999753

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.7e-30  Score=230.16  Aligned_cols=263  Identities=17%  Similarity=0.197  Sum_probs=197.9

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCc---cEEEEeeCCCeEEEEecCCCceeeeeeeeeecce-----ecceEEEEEC-
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVA---PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH-----TRTVRSCAWS-   83 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~---~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~s-   83 (352)
                      .+.++.+|...|++++|+|+.  ...+   .+|++++.|+.|++|++.+..............|     ...|.+++|+ 
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~--~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  131 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAI--ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA  131 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEE--ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred             cceEEecCCCcEEEEEEeccc--ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence            466788999999999999960  0014   5899999999999999876543100001111335     5899999999 


Q ss_pred             ---CCCCE-EEEEeCCCcEEEEEccC------Cceee---eEee-------ccccCCeeEEEECCCCcEEEEeeCCCcEE
Q 018675           84 ---PSGKL-LATASFDATTCIWEDVG------GDYEC---VATL-------EGHENEVKSVSWNASGTLLATCGRDKSVW  143 (352)
Q Consensus        84 ---~~~~~-l~s~~~d~~i~i~~~~~------~~~~~---~~~~-------~~h~~~v~~v~~~~~~~~l~s~~~d~~v~  143 (352)
                         |+++. |++++.|+.+++||...      +....   ...+       ..|...|.+++|+|++ +|++++.|+.|+
T Consensus       132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~  210 (397)
T 1sq9_A          132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQ  210 (397)
T ss_dssp             CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEE
T ss_pred             ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEE
Confidence               99999 99999999999999876      32111   1134       4588899999999999 999999999999


Q ss_pred             EEecCCCCeeEEEEEeec---C---ccCeeEEEEcCCCCEEEEEeCC---CcEEEEecCCCCCCCceeEeeeec------
Q 018675          144 IWEVMPGNEFECVSVLQG---H---AQDVKMVQWHPTMDVLFSCSYD---NTIKVWWAEDTDSDNWHCVQTISE------  208 (352)
Q Consensus       144 vwd~~~~~~~~~~~~~~~---h---~~~v~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~------  208 (352)
                      +||+...   ..+..+..   |   ...+.+++|+|++.+|++++.|   +.|++|++...     .....+..      
T Consensus       211 i~d~~~~---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-----~~~~~~~~~~~~~~  282 (397)
T 1sq9_A          211 ISELSTL---RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-----ERIGSLSVPTHSSQ  282 (397)
T ss_dssp             EEETTTT---EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-----CEEEEECBC-----
T ss_pred             EEECCCC---ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-----cccceeccCccccc
Confidence            9999754   34556667   8   8899999999999999999999   99999987643     22333321      


Q ss_pred             ---cCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeec-----cc-------------
Q 018675          209 ---SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG-----YH-------------  267 (352)
Q Consensus       209 ---~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~-------------  267 (352)
                         ....|...|.+++|+|++.+|++++.||.|++||++..+           ....+..     .|             
T Consensus       283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~g~~~~~~  351 (397)
T 1sq9_A          283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-----------RITTLNMHCDDIEIEEDILAVDEHGDS  351 (397)
T ss_dssp             ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------EEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred             ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-----------eeEEEecccCcccchhhhhcccccccc
Confidence               001188999999999999999999999999999986322           1222220     12             


Q ss_pred             --CcceEEEEecCCc-----------eEEecCCCCeEEEEEcc
Q 018675          268 --DRTIFSVHWSREG-----------IIASGAADDSVQFFVES  297 (352)
Q Consensus       268 --~~~i~~~~~~~~~-----------~~~s~~~d~~v~~~~~~  297 (352)
                        ...+.+++|++++           ++++++.|+.+++|+..
T Consensus       352 ~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          352 LAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             CSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             ccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence              7789999999985           89999999999999653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=8.4e-29  Score=223.35  Aligned_cols=243  Identities=22%  Similarity=0.402  Sum_probs=194.2

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcE
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATT   98 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   98 (352)
                      +|...|++++|+|+      +.+|++++.||.|++|++.++.....    + ..|...|.+++|  +++.+++|+.|+.+
T Consensus       132 ~~~~~v~~v~~s~~------~~~l~~~~~dg~i~iwd~~~~~~~~~----~-~~~~~~v~~~~~--~~~~l~~~~~dg~i  198 (401)
T 4aez_A          132 DESTYVASVKWSHD------GSFLSVGLGNGLVDIYDVESQTKLRT----M-AGHQARVGCLSW--NRHVLSSGSRSGAI  198 (401)
T ss_dssp             CTTCCEEEEEECTT------SSEEEEEETTSCEEEEETTTCCEEEE----E-CCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred             CCCCCEEEEEECCC------CCEEEEECCCCeEEEEECcCCeEEEE----e-cCCCCceEEEEE--CCCEEEEEcCCCCE
Confidence            38999999999996      57999999999999999987653222    2 358899999999  56899999999999


Q ss_pred             EEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC-E
Q 018675           99 CIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-V  177 (352)
Q Consensus        99 ~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~  177 (352)
                      ++||..... .....+.+|.+.|.+++|+|++.+|++++.|+.|++||+....   .+..+..|...+.+++|+|++. +
T Consensus       199 ~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~p~~~~l  274 (401)
T 4aez_A          199 HHHDVRIAN-HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI---PKFTKTNHNAAVKAVAWCPWQSNL  274 (401)
T ss_dssp             EEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS---EEEEECCCSSCCCEEEECTTSTTE
T ss_pred             EEEecccCc-ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC---ccEEecCCcceEEEEEECCCCCCE
Confidence            999987433 3466778899999999999999999999999999999997643   4556778999999999999764 5


Q ss_pred             EEEEe--CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE--eCCCcEEEEcCCccccccCCC
Q 018675          178 LFSCS--YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC--SDDLTIKIWGADITRMQSGDG  253 (352)
Q Consensus       178 l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~  253 (352)
                      +++++  .|+.|++|++...     .....+     .+...|.+++|+|++.+++++  +.||.|++|++.....     
T Consensus       275 l~~~~gs~d~~i~i~d~~~~-----~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-----  339 (401)
T 4aez_A          275 LATGGGTMDKQIHFWNAATG-----ARVNTV-----DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-----  339 (401)
T ss_dssp             EEEECCTTTCEEEEEETTTC-----CEEEEE-----ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-----
T ss_pred             EEEecCCCCCEEEEEECCCC-----CEEEEE-----eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-----
Confidence            66655  7999999987643     223333     245789999999999999984  4899999998753211     


Q ss_pred             CccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccC
Q 018675          254 YASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK  298 (352)
Q Consensus       254 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~  298 (352)
                          .....+ ..|...+.++.|++++ ++++++.|+.+++|+...
T Consensus       340 ----~~~~~~-~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          340 ----TKQVDI-PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             ----EEEEEE-ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             ----eeEEEe-cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence                111122 2467789999999976 799999999999997654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-28  Score=217.02  Aligned_cols=251  Identities=16%  Similarity=0.257  Sum_probs=202.3

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..+.++.+|.+.|++++|+|+      +++|++++.|++|++|++.+++....    +  .|...|.+++|+|+++.+++
T Consensus        65 ~~~~~~~~h~~~v~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~----~--~~~~~v~~~~~~~~~~~l~~  132 (369)
T 3zwl_B           65 ERLGTLDGHTGTIWSIDVDCF------TKYCVTGSADYSIKLWDVSNGQCVAT----W--KSPVPVKRVEFSPCGNYFLA  132 (369)
T ss_dssp             CEEEEECCCSSCEEEEEECTT------SSEEEEEETTTEEEEEETTTCCEEEE----E--ECSSCEEEEEECTTSSEEEE
T ss_pred             hhhhhhhhcCCcEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCcEEEE----e--ecCCCeEEEEEccCCCEEEE
Confidence            456678899999999999996      47999999999999999987653322    2  26788999999999999999


Q ss_pred             EeCC-----CcEEEEEccCCce---------eeeEeeccccC--CeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEE
Q 018675           92 ASFD-----ATTCIWEDVGGDY---------ECVATLEGHEN--EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC  155 (352)
Q Consensus        92 ~~~d-----~~i~i~~~~~~~~---------~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  155 (352)
                      ++.+     +.+.+|+......         .....+..|.+  .+.+++|+|++++|++++.|+.|++||+....  ..
T Consensus       133 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~  210 (369)
T 3zwl_B          133 ILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY--EY  210 (369)
T ss_dssp             EECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT--EE
T ss_pred             ecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc--Ee
Confidence            9999     9999999754421         12334455666  89999999999999999999999999987532  34


Q ss_pred             EEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC
Q 018675          156 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD  235 (352)
Q Consensus       156 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d  235 (352)
                      +..+..|...+.+++|+|++.+|++++.|+.|++|++...     .....+.     +...+.+++|+|++.++++++.+
T Consensus       211 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~  280 (369)
T 3zwl_B          211 VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL-----QVLKKYE-----TDCPLNTAVITPLKEFIILGGGQ  280 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----CEEEEEE-----CSSCEEEEEECSSSSEEEEEECC
T ss_pred             EEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC-----ceeeeec-----CCCCceeEEecCCCceEEEeecC
Confidence            6677889999999999999999999999999999987543     2233332     56789999999999999999998


Q ss_pred             C--------------cEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccC
Q 018675          236 L--------------TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK  298 (352)
Q Consensus       236 g--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~  298 (352)
                      +              .+++||....+           ....+ ..|...+.++.|++++ ++++++.|+.+++|+...
T Consensus       281 ~~~~~~~~~~~~~~~~i~~~d~~~~~-----------~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          281 EAKDVTTTSANEGKFEARFYHKIFEE-----------EIGRV-QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             C-------------CEEEEEETTTCC-----------EEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             CCceEEEEecCCCcceeEEEecCCCc-----------chhhe-ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            8              78888864321           22222 2367789999999876 799999999999997654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.9e-29  Score=227.57  Aligned_cols=257  Identities=22%  Similarity=0.320  Sum_probs=194.7

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceee---eeeeeeecceecceEEEEECCCC-CEE
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFW---NCKAVLEEMHTRTVRSCAWSPSG-KLL   89 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~-~~l   89 (352)
                      +..+.+|.+.|++++|+|.+     +.+|++|+.|++|++|++.+.....   ..... ...|...|.+++|+|++ ++|
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~-----~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~l  147 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHN-----DNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT-LEGHTKRVGIVAWHPTAQNVL  147 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTC-----TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEE-EECCSSCEEEEEECSSBTTEE
T ss_pred             CceEecCCCCEEEEEeCCCC-----CCEEEEEeCCCeEEEEEccCCCCccccCCceEE-ecCCCCeEEEEEECcCCCCEE
Confidence            34577999999999999943     4799999999999999987753111   11111 23588999999999998 699


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEee--ccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEe-ecCccC-
Q 018675           90 ATASFDATTCIWEDVGGDYECVATL--EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL-QGHAQD-  165 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~h~~~-  165 (352)
                      ++++.|+.|++||..+++  +...+  .+|...|.+++|+|++++|++++.|++|++||++.+.   .+..+ .+|... 
T Consensus       148 ~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~  222 (402)
T 2aq5_A          148 LSAGCDNVILVWDVGTGA--AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT---VVAEKDRPHEGTR  222 (402)
T ss_dssp             EEEETTSCEEEEETTTTE--EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---EEEEEECSSCSSS
T ss_pred             EEEcCCCEEEEEECCCCC--ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc---eeeeeccCCCCCc
Confidence            999999999999987763  45566  7899999999999999999999999999999987653   34455 577755 


Q ss_pred             eeEEEEcCCCCEEEEE---eCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE-EeCCCcEEEE
Q 018675          166 VKMVQWHPTMDVLFSC---SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS-CSDDLTIKIW  241 (352)
Q Consensus       166 v~~~~~~~~~~~l~s~---~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s-~~~dg~i~iw  241 (352)
                      +.++.|+|++.+++++   +.|+.|++|++...... . ....     ..|...+.+++|+|++.+|++ |+.||.|++|
T Consensus       223 ~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-~-~~~~-----~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~  295 (402)
T 2aq5_A          223 PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-L-SLQE-----LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF  295 (402)
T ss_dssp             CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC-S-EEEE-----CCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred             ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC-c-eEEe-----ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence            8899999999999998   78999999987653211 0 1111     145678999999999999875 5579999999


Q ss_pred             cCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccC
Q 018675          242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK  298 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~  298 (352)
                      +++..+.       ....+..+.  +...+.+++|++++.+++. .++.+++|....
T Consensus       296 d~~~~~~-------~~~~l~~~~--~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~  342 (402)
T 2aq5_A          296 EITSEAP-------FLHYLSMFS--SKESQRGMGYMPKRGLEVN-KCEIARFYKLHE  342 (402)
T ss_dssp             EECSSTT-------CEEEEEEEC--CSSCCSEEEECCGGGSCGG-GTEEEEEEEEET
T ss_pred             EecCCCc-------ceEeecccc--cCCcccceEEeccccccee-cceeEEEEEcCC
Confidence            9753221       001111111  4577899999998855443 566899997654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2.1e-30  Score=233.19  Aligned_cols=253  Identities=13%  Similarity=0.095  Sum_probs=166.4

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC--------CCCEEEEEeCCCcEEEEEccCCceee
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP--------SGKLLATASFDATTCIWEDVGGDYEC  110 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--------~~~~l~s~~~d~~i~i~~~~~~~~~~  110 (352)
                      +.++|+++.|++|+||+...+.............|...|++++|+|        |+++||+|+.|++++|||..++.  +
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~--~  178 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG--P  178 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE--E
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc--e
Confidence            4689999999999999988764322211122356999999999998        88999999999999999987653  3


Q ss_pred             eEeeccccCCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeEE----------------------EEEeecCccCee
Q 018675          111 VATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFEC----------------------VSVLQGHAQDVK  167 (352)
Q Consensus       111 ~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~----------------------~~~~~~h~~~v~  167 (352)
                      ...+.+|...|.+++|+|++. +|++++.|++|++||+..+.....                      .....+|...+.
T Consensus       179 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~  258 (393)
T 4gq1_A          179 ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA  258 (393)
T ss_dssp             EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred             eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence            455667899999999999874 799999999999999875432111                      111246777888


Q ss_pred             EEEEc-CCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          168 MVQWH-PTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       168 ~~~~~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      ++.|+ |++..+++++.|+.+++|++.....     ...    ...|...+..+.+.|+...+........         
T Consensus       259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-----~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  320 (393)
T 4gq1_A          259 NVRWIGSDGSGILAMCKSGAWLRWNLFANND-----YNE----ISDSTMKLGPKNLLPNVQGISLFPSLLG---------  320 (393)
T ss_dssp             EEEEETTTTCEEEEECTTSEEEEEEC----------------------------CCSCSEEEECSSCCSSC---------
T ss_pred             eeeeecCCCCEEEEEeCCCCEEEEECccCCC-----Cce----EeeecCccccEEEccccccccccCccee---------
Confidence            99986 7899999999999999998754321     111    1235555666666655432211111000         


Q ss_pred             ccccCCCCccceeeEEeecccCcceEEEEe-cCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEE
Q 018675          247 RMQSGDGYASWRHLCTISGYHDRTIFSVHW-SREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV  324 (352)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  324 (352)
                                                ...+ ..++ ++++|+.|+.|++|+......         .....+|...|+++
T Consensus       321 --------------------------~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~---------~~~~~~~~~~V~sv  365 (393)
T 4gq1_A          321 --------------------------ACPHPRYMDYFATAHSQHGLIQLINTYEKDS---------NSIPIQLGMPIVDF  365 (393)
T ss_dssp             --------------------------CEECSSCTTEEEEEETTTTEEEEEETTCTTC---------CEEEEECSSCEEEE
T ss_pred             --------------------------EEEccCCCCEEEEEECCCCEEEEEECCCCcE---------EEEecCCCCcEEEE
Confidence                                      0011 1123 567788899999997643221         12335688899999


Q ss_pred             EecCCCcceEEEecCCCeEEEEee
Q 018675          325 QWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       325 ~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      +|||||+ +||+++.||. .+|.+
T Consensus       366 afspdG~-~LA~as~~Gv-~lvrL  387 (393)
T 4gq1_A          366 CWHQDGS-HLAIATEGSV-LLTRL  387 (393)
T ss_dssp             EECTTSS-EEEEEESSEE-EEEEE
T ss_pred             EEcCCCC-EEEEEeCCCe-EEEEE
Confidence            9999997 6889987774 44443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5e-29  Score=220.11  Aligned_cols=264  Identities=11%  Similarity=0.032  Sum_probs=184.7

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCC-------ceeee
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG-------DYECV  111 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~-------~~~~~  111 (352)
                      +.+++||+.||+|++|++.+++.....       ....|.++.|+|+   +++++.|+++++|+....       ....+
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~-------~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSKTITTI-------TTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSSCEEEE-------EEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCcEEEEECCCCcEEEEE-------ecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            578999999999999999877543222       1467888889988   999999999999975421       01112


Q ss_pred             -EeeccccCCeeEEEECC--CCcEEEEeeCCCcEEEEecCCCCeeEEEEEe-ecCccCeeEEEEcCCCCEEEEEeCCCcE
Q 018675          112 -ATLEGHENEVKSVSWNA--SGTLLATCGRDKSVWIWEVMPGNEFECVSVL-QGHAQDVKMVQWHPTMDVLFSCSYDNTI  187 (352)
Q Consensus       112 -~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i  187 (352)
                       ....+|.+.|.+++|+|  ++++|++++.|++|++||+..+..   .... ..|...+.+++|+|++.++++|+.|+.|
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i  194 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ---YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGIL  194 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE---EEEECCCSSCCCCEEEECTTSCEEEEECTTSCE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE---EEEEecCCCCceEEEEECCCCCEEEEEcCCCEE
Confidence             22236778999999999  999999999999999999976653   3333 3455579999999999999999999999


Q ss_pred             EEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc-CCCCccceeeEEeecc
Q 018675          188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS-GDGYASWRHLCTISGY  266 (352)
Q Consensus       188 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~  266 (352)
                      ++||+......    ...+.   .+|..+|.+++|+|++.+|++++ |+.|++||++..+... ...+.          .
T Consensus       195 ~iwd~~~~~~~----~~~~~---~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~----------~  256 (343)
T 3lrv_A          195 DVYNLSSPDQA----SSRFP---VDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT----------I  256 (343)
T ss_dssp             EEEESSCTTSC----CEECC---CCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB----------C
T ss_pred             EEEECCCCCCC----ccEEe---ccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc----------c
Confidence            99998654311    01221   14899999999999999999999 5599999987533211 00000          0


Q ss_pred             cCcce--EEEEecCCc-eEEecCC-CCeEEEEEccCCccccCcccceeeecccccCcceeEEEecC---CCcceEEEecC
Q 018675          267 HDRTI--FSVHWSREG-IIASGAA-DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP---GERRLLASASD  339 (352)
Q Consensus       267 ~~~~i--~~~~~~~~~-~~~s~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp---~~~~~l~s~~~  339 (352)
                      +...+  .+++|++++ ++++++. |+.+++|.......    ...    .     .++..++|+|   +.+ .+++++.
T Consensus       257 ~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~----~~~----~-----~~~~~~~~~~~~~~~~-~l~~~~~  322 (343)
T 3lrv_A          257 PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK----NWT----K-----DEESALCLQSDTADFT-DMDVVCG  322 (343)
T ss_dssp             -----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC----SEE----E-----EEEEECCC----CCCC-EEEEEEE
T ss_pred             ccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc----ceE----e-----cCceeEecCccccccc-eeEEEec
Confidence            11111  468899876 6777777 99999997643211    000    0     3466677776   554 3567777


Q ss_pred             CCeEEEEe
Q 018675          340 DGMIKIWE  347 (352)
Q Consensus       340 Dg~i~iw~  347 (352)
                      ||.++++-
T Consensus       323 d~~~~~~~  330 (343)
T 3lrv_A          323 DGGIAAIL  330 (343)
T ss_dssp             TTEEEEEE
T ss_pred             CCceEEEE
Confidence            88777764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=2.1e-28  Score=222.11  Aligned_cols=248  Identities=24%  Similarity=0.438  Sum_probs=195.2

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      +..+.+|.+.|+|++|+|+      +.+||+|+.|++|++|++.+++.+..     ...|...+.++++  ++..|++|+
T Consensus       140 ~~~~~~~~~~V~sv~fspd------g~~lasgs~Dg~v~iWd~~~~~~~~~-----~~~h~~~v~~~s~--~~~~l~sgs  206 (420)
T 4gga_A          140 LLQMEQPGEYISSVAWIKE------GNYLAVGTSSAEVQLWDVQQQKRLRN-----MTSHSARVGSLSW--NSYILSSGS  206 (420)
T ss_dssp             EEECCSTTCCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEEE-----ECCCSSCEEEEEE--ETTEEEEEE
T ss_pred             EEEecCCCCcEEEEEECCC------CCEEEEEECCCeEEEEEcCCCcEEEE-----EeCCCCceEEEee--CCCEEEEEe
Confidence            3455688999999999997      57999999999999999988754322     2458888888776  468999999


Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe-eEEEEEeecCccCeeEEEEc
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWH  172 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~h~~~v~~~~~~  172 (352)
                      .|+.+.+|+..... ..+..+.+|...+..+.|+|++.++++++.|+.+++|+...+.. ...+.....|...|.+++|+
T Consensus       207 ~d~~i~~~d~~~~~-~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~  285 (420)
T 4gga_A          207 RSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC  285 (420)
T ss_dssp             TTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEEC
T ss_pred             CCCceeEeeecccc-eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeC
Confidence            99999999976543 44667889999999999999999999999999999999865432 12345566788899999999


Q ss_pred             CCCC-EEEE--EeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe--CCCcEEEEcCCccc
Q 018675          173 PTMD-VLFS--CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS--DDLTIKIWGADITR  247 (352)
Q Consensus       173 ~~~~-~l~s--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~--~dg~i~iwd~~~~~  247 (352)
                      |.+. .+++  |+.|+.|++|++...     .+...+.     +...+.++.|+|++..+++++  .|+.|+|||+... 
T Consensus       286 p~~~~~la~~~gs~D~~I~iwd~~t~-----~~~~~~~-----~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-  354 (420)
T 4gga_A          286 PWQSNVLATGGGTSDRHIRIWNVCSG-----ACLSAVD-----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-  354 (420)
T ss_dssp             TTCTTEEEEEECTTTCEEEEEETTTT-----EEEEEEE-----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-
T ss_pred             CCcccEEEEEeecCCCEEEEEeCCcc-----ccceeec-----cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-
Confidence            9754 5554  457999999987543     2333332     345788999999999988765  7999999987532 


Q ss_pred             cccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEcc
Q 018675          248 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVES  297 (352)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~  297 (352)
                                .....+. .|...|.+++|+|++ +|++++.|++|++|+..
T Consensus       355 ----------~~v~~l~-gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          355 ----------AKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             ----------CEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             ----------cEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence                      2333443 478899999999976 89999999999999653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.1e-30  Score=247.61  Aligned_cols=223  Identities=27%  Similarity=0.484  Sum_probs=181.6

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC--CCEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS--GKLL   89 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l   89 (352)
                      ..+.++.+|.+.|++++|+|+..    +.+|++|+.||+|++|++.++..  .... ....|...|++++|+|+  ++.+
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~~~----~~~l~s~s~Dg~I~vwd~~~~~~--~~~~-~~~~h~~~V~~v~~sp~~~~~~l  116 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHPKF----GTILASCSYDGKVLIWKEENGRW--SQIA-VHAVHSASVNSVQWAPHEYGPLL  116 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCTTS----CSEEEEEETTSCEEEEEEETTEE--EEEE-EECCCSSCEEEEEECCGGGCSEE
T ss_pred             ccceeccCCcCceEEEEecCCCC----CCEEEEEeCCCeEEEEECCCCcc--cccc-cccCCCCCeEEEEECCCCCCCEE
Confidence            44567889999999999988631    47999999999999999887531  1111 22458899999999999  9999


Q ss_pred             EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECC-------------CCcEEEEeeCCCcEEEEecCCCC-eeEE
Q 018675           90 ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA-------------SGTLLATCGRDKSVWIWEVMPGN-EFEC  155 (352)
Q Consensus        90 ~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-------------~~~~l~s~~~d~~v~vwd~~~~~-~~~~  155 (352)
                      ++|+.|+.|++||..++.......+.+|...|.++.|+|             ++..|++|+.|++|++||+..+. ...+
T Consensus       117 ~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~  196 (753)
T 3jro_A          117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  196 (753)
T ss_dssp             EEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             EEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccccee
Confidence            999999999999987764444556778999999999999             48899999999999999997654 2345


Q ss_pred             EEEeecCccCeeEEEEcCC---CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE
Q 018675          156 VSVLQGHAQDVKMVQWHPT---MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       156 ~~~~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                      ...+.+|...|++++|+|+   +.++++++.|+.|++|++........   . ......+|...|++++|+|++.+++++
T Consensus       197 ~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~---~-~~~~~~~~~~~v~~l~~spdg~~l~s~  272 (753)
T 3jro_A          197 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK---K-TLLKEEKFPDVLWRASWSLSGNVLALS  272 (753)
T ss_dssp             EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB---C-CBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred             eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce---e-EEeccCCCCCceEEEEEcCCCCEEEEE
Confidence            6678899999999999999   89999999999999999865421111   0 111234588899999999999999999


Q ss_pred             eCCCcEEEEcCCc
Q 018675          233 SDDLTIKIWGADI  245 (352)
Q Consensus       233 ~~dg~i~iwd~~~  245 (352)
                      +.||.|++|+++.
T Consensus       273 s~Dg~I~vwd~~~  285 (753)
T 3jro_A          273 GGDNKVTLWKENL  285 (753)
T ss_dssp             CSSSCEECCBCCS
T ss_pred             cCCCEEEEEecCC
Confidence            9999999999763

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=2.4e-28  Score=219.89  Aligned_cols=289  Identities=20%  Similarity=0.308  Sum_probs=185.5

Q ss_pred             cCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC---CCEEEEEeC
Q 018675           18 EGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS---GKLLATASF   94 (352)
Q Consensus        18 ~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~   94 (352)
                      .+|...|++++|+|.+     +.+|++++.|++|++|++.+.....    .+  .+...+.++.|+|.   +.++++++.
T Consensus        96 ~~~~~~v~~~~~~~~~-----~~~l~s~~~d~~i~iwd~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (408)
T 4a11_B           96 DVHRYSVETVQWYPHD-----TGMFTSSSFDKTLKVWDTNTLQTAD----VF--NFEETVYSHHMSPVSTKHCLVAVGTR  164 (408)
T ss_dssp             TCCSSCEEEEEECTTC-----TTCEEEEETTSEEEEEETTTTEEEE----EE--ECSSCEEEEEECSSCSSCCEEEEEES
T ss_pred             ccCCCcEEEEEEccCC-----CcEEEEEeCCCeEEEeeCCCCccce----ec--cCCCceeeeEeecCCCCCcEEEEEcC
Confidence            3699999999999954     4689999999999999998764322    11  25678899999885   459999999


Q ss_pred             CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeEEEEEe--------------
Q 018675           95 DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVL--------------  159 (352)
Q Consensus        95 d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~--------------  159 (352)
                      |+.+++||..++.  ....+.+|.+.|.+++|+|++. +|++++.|+.|++||++....  +...+              
T Consensus       165 ~~~v~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~  240 (408)
T 4a11_B          165 GPKVQLCDLKSGS--CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG--CLITLDQHNGKKSQAVESA  240 (408)
T ss_dssp             SSSEEEEESSSSC--CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC--CSEECCTTTTCSCCCTTTS
T ss_pred             CCeEEEEeCCCcc--eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc--ccccccccccccceeeccc
Confidence            9999999987653  4567788999999999999988 599999999999999865431  11222              


Q ss_pred             -ecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcE
Q 018675          160 -QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTI  238 (352)
Q Consensus       160 -~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i  238 (352)
                       ..|...|.+++|+|++.+|++++.|+.|++|++...........    .........+........+..++.++.|+.|
T Consensus       241 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  316 (408)
T 4a11_B          241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG----KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI  316 (408)
T ss_dssp             SCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC----CCCCCCSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred             cccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc----cccccccccceeEEecCCCceEEEEecCCEE
Confidence             46888999999999999999999999999999865432110000    0000111111112223345567777889999


Q ss_pred             EEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeeccccc
Q 018675          239 KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH  317 (352)
Q Consensus       239 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h  317 (352)
                      ++||+...           .....+. .|...+.+++|++++ ++++++.|+.+++|+........         ....+
T Consensus       317 ~v~d~~~~-----------~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---------~~~~~  375 (408)
T 4a11_B          317 AVYTVYSG-----------EQITMLK-GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP---------DDDET  375 (408)
T ss_dssp             EEEETTTC-----------CEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------
T ss_pred             EEEECcCC-----------cceeeec-cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC---------CCCce
Confidence            99997532           1222332 467789999999975 89999999999999775432211         11111


Q ss_pred             CcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          318 DMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       318 ~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                         -....+.|.....+.+.+.|+.+++|+..
T Consensus       376 ---~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          376 ---TTKSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             --------------------------------
T ss_pred             ---EeccccccccceeecccCccCceeecCCc
Confidence               11223344333456788889999999864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=3.5e-27  Score=214.59  Aligned_cols=293  Identities=11%  Similarity=0.038  Sum_probs=210.8

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..+..+..+ ..+.+++|+|.      +.++++++.|++|++|+..+++............|...|.+++|+|+++++++
T Consensus       114 ~~~~~~~~~-~~~~~~~~s~~------~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s  186 (433)
T 3bws_A          114 RFISRFKTG-FQPKSVRFIDN------TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVS  186 (433)
T ss_dssp             EEEEEEECS-SCBCCCEESSS------SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEE
T ss_pred             eEEEEEcCC-CCceEEEEeCC------CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEE
Confidence            344445444 44668999994      47888988999999999987654321111111357789999999999999999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEE-EeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      ++.|+.+++||..+++  ....+..|...+.+++|+|+++.++ +++.|+.|++||+..+.   .+..+..+ ..+.+++
T Consensus       187 ~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~-~~~~~~~  260 (433)
T 3bws_A          187 QMQANAVHVFDLKTLA--YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL---EIRKTDKI-GLPRGLL  260 (433)
T ss_dssp             EGGGTEEEEEETTTCC--EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE---EEEECCCC-SEEEEEE
T ss_pred             ECCCCEEEEEECCCce--EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc---EEEEecCC-CCceEEE
Confidence            9999999999987654  4556667888999999999999875 55589999999987543   34444443 4588999


Q ss_pred             EcCCCCEEEEEe--------CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE-EEEEeCCCcEEEE
Q 018675          171 WHPTMDVLFSCS--------YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK-LVSCSDDLTIKIW  241 (352)
Q Consensus       171 ~~~~~~~l~s~~--------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~-l~s~~~dg~i~iw  241 (352)
                      |+|++..+++++        .|+.|++|++...     .....+     .|...+.+++|+|++++ +++++.|+.|++|
T Consensus       261 ~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-----~~~~~~-----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~  330 (433)
T 3bws_A          261 LSKDGKELYIAQFSASNQESGGGRLGIYSMDKE-----KLIDTI-----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVY  330 (433)
T ss_dssp             ECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT-----EEEEEE-----EEEECEEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred             EcCCCCEEEEEECCCCccccCCCeEEEEECCCC-----cEEeec-----cCCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            999999998887        4889999987543     122222     34567889999999975 4677899999999


Q ss_pred             cCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCC---------------CCeEEEEEccCCccccCc
Q 018675          242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAA---------------DDSVQFFVESKDDLIDGP  305 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~---------------d~~v~~~~~~~~~~~~~~  305 (352)
                      |++..+           ....+.  +...+..+++++++ ++++++.               ||.+++|+.....     
T Consensus       331 d~~~~~-----------~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~-----  392 (433)
T 3bws_A          331 DLKEKK-----------VQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT-----  392 (433)
T ss_dssp             ETTTTE-----------EEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE-----
T ss_pred             ECCCCc-----------EEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc-----
Confidence            975321           111221  34567889999876 4555544               5699999764321     


Q ss_pred             ccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          306 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       306 ~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                          .+..... ...+.+++|+|+++.++++++.|+.|++|++..
T Consensus       393 ----~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          393 ----VKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             ----EEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ----EEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence                1222222 457999999999986555555699999999863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=3.9e-28  Score=213.31  Aligned_cols=228  Identities=20%  Similarity=0.366  Sum_probs=174.5

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCcee-----eeeeeeeecceecceEEEEECCC-
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRF-----WNCKAVLEEMHTRTVRSCAWSPS-   85 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~s~~-   85 (352)
                      ..+.++.+|...|++++|+|...    +.+|++++.|++|++|++.++...     +.....+ ..|...|.+++|+|+ 
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d----~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~  122 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEY----GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAH  122 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGG----CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGG
T ss_pred             eecceeccCCCcEEEEEEcCCCC----CCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCC
Confidence            45667789999999999999410    479999999999999998765311     1112222 358899999999999 


Q ss_pred             -CCEEEEEeCCCcEEEEEccCCceeeeE-----------eeccccCCeeEEEECCC---CcEEEEeeCCCcEEEEecCCC
Q 018675           86 -GKLLATASFDATTCIWEDVGGDYECVA-----------TLEGHENEVKSVSWNAS---GTLLATCGRDKSVWIWEVMPG  150 (352)
Q Consensus        86 -~~~l~s~~~d~~i~i~~~~~~~~~~~~-----------~~~~h~~~v~~v~~~~~---~~~l~s~~~d~~v~vwd~~~~  150 (352)
                       +++|++++.|+.+++||..++......           ....|...+.++.|+|+   +..|++++.|+.+.+|+...+
T Consensus       123 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~  202 (351)
T 3f3f_A          123 LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG  202 (351)
T ss_dssp             GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS
T ss_pred             CCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC
Confidence             999999999999999997654321100           11267889999999997   899999999999977776544


Q ss_pred             CeeEEEEEeecCccCeeEEEEcCCC----CEEEEEeCCCcEEEEecCCCCCCCc--------------------------
Q 018675          151 NEFECVSVLQGHAQDVKMVQWHPTM----DVLFSCSYDNTIKVWWAEDTDSDNW--------------------------  200 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~s~~~d~~i~iw~~~~~~~~~~--------------------------  200 (352)
                       ....+..+.+|...|.+++|+|++    .+|++++.|+.|++|++........                          
T Consensus       203 -~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (351)
T 3f3f_A          203 -KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSD  281 (351)
T ss_dssp             -CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------
T ss_pred             -ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccc
Confidence             344567788899999999999998    7999999999999998765211000                          


Q ss_pred             -----------eeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          201 -----------HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       201 -----------~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                                 ...........+|...|.+++|+|++++|++++.||.|++|+++.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          282 SNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             ---------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             cccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence                       000011122347899999999999999999999999999998753

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.2e-27  Score=212.12  Aligned_cols=247  Identities=17%  Similarity=0.298  Sum_probs=180.8

Q ss_pred             cceecceEEEEECCC---CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEec
Q 018675           71 EMHTRTVRSCAWSPS---GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV  147 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~---~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~  147 (352)
                      ..|...|++++|+|+   |++|++|+.|+.|++|+..+........+.+|.+.|++++|+|++++|++++.|++|++||+
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  115 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL  115 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence            458999999999999   69999999999999999876343444677889999999999999999999999999999998


Q ss_pred             CCCCeeEEEEEeecCccCeeEEEE--cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC
Q 018675          148 MPGNEFECVSVLQGHAQDVKMVQW--HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK  225 (352)
Q Consensus       148 ~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~  225 (352)
                      ..+.   .+ ....|...|.++.|  +|++.++++++.|+.|++|++....     ....+.    .+ ..+.++.+.  
T Consensus       116 ~~~~---~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~----~~-~~~~~~~~~--  179 (368)
T 3mmy_A          116 SSNQ---AI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-----PMMVLQ----LP-ERCYCADVI--  179 (368)
T ss_dssp             TTTE---EE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-----CSEEEE----CS-SCEEEEEEE--
T ss_pred             CCCC---ce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-----EEEEEe----cC-CCceEEEec--
Confidence            7553   22 25568999999999  8899999999999999999876532     122222    12 356666665  


Q ss_pred             CCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEE--EecCC---ceEEecCCCCeEEEEEccCCc
Q 018675          226 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV--HWSRE---GIIASGAADDSVQFFVESKDD  300 (352)
Q Consensus       226 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~---~~~~s~~~d~~v~~~~~~~~~  300 (352)
                      ...+++++.++.+++|+++.....          ..............+  .....   ..+++++.|+.+++|+.....
T Consensus       180 ~~~~~~~~~~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~  249 (368)
T 3mmy_A          180 YPMAVVATAERGLIVYQLENQPSE----------FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN  249 (368)
T ss_dssp             TTEEEEEEGGGCEEEEECSSSCEE----------EEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred             CCeeEEEeCCCcEEEEEeccccch----------hhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence            457889999999999998632110          011111111222222  22221   238999999999999775431


Q ss_pred             cccCcccceeeecccccC------------cceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          301 LIDGPSYKMLLKKEKAHD------------MDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       301 ~~~~~~~~~~~~~~~~h~------------~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .      ........+|.            ..|++++|+|+++ +|++++.||.|+|||+..
T Consensus       250 ~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          250 P------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             H------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTT
T ss_pred             c------cccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCC
Confidence            1      01112233443            3799999999986 688999999999999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.4e-27  Score=214.73  Aligned_cols=255  Identities=12%  Similarity=0.024  Sum_probs=189.6

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEE-EEeeCCCeEEEEecC--CCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVF-ASCSGDKTVRIWEQS--ASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l-~s~s~D~~v~~w~~~--~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      .+.+|.+.|++++|+|+      +++| ++++.|++|++|++.  ++.......   ...|...|.+++|+|++++|++|
T Consensus        97 ~~~~~~~~v~~~~~s~d------~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~  167 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSD------ESRLIACADSDKSLLVFDVDKTSKNVLKLRK---RFCFSKRPNAISIAEDDTTVIIA  167 (450)
T ss_dssp             ---CCCCCEEEEEECTT------SSEEEEEEGGGTEEEEEEECSSSSSCEEEEE---EEECSSCEEEEEECTTSSEEEEE
T ss_pred             CCCccCCceEEEEEcCC------CCEEEEEECCCCeEEEEECcCCCCceeeeee---cccCCCCceEEEEcCCCCEEEEE
Confidence            34578889999999997      4564 999999999999987  544322111   12366889999999999999999


Q ss_pred             eCCCcEEEEEccCCcee--eeEeeccccCCeeEEEECCC---CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCee
Q 018675           93 SFDATTCIWEDVGGDYE--CVATLEGHENEVKSVSWNAS---GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVK  167 (352)
Q Consensus        93 ~~d~~i~i~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~---~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~  167 (352)
                      +.|+.+.+|+..++...  +...+.+|...|++++|+|+   +.+|++++.|++|++||+..+...  ...+.+|...|.
T Consensus       168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~h~~~v~  245 (450)
T 2vdu_B          168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV--DKWLFGHKHFVS  245 (450)
T ss_dssp             ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE--EEECCCCSSCEE
T ss_pred             eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee--eeeecCCCCceE
Confidence            99999999997665422  23356789999999999999   999999999999999999765432  122568999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeecc---------------------CCCCcccEEEEEEcCCC
Q 018675          168 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES---------------------NNGHSSTIWALSFNAKG  226 (352)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---------------------~~~h~~~i~~l~~~~~~  226 (352)
                      +++|+ ++.+|++++.|+.|++|++....     +...+...                     .......|.++.|+|++
T Consensus       246 ~~~~s-d~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  319 (450)
T 2vdu_B          246 SICCG-KDYLLLSAGGDDKIFAWDWKTGK-----NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL  319 (450)
T ss_dssp             EEEEC-STTEEEEEESSSEEEEEETTTCC-----EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred             EEEEC-CCCEEEEEeCCCeEEEEECCCCc-----EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence            99999 99999999999999999876532     22222100                     00234579999999999


Q ss_pred             CEEEEEe-CCCcEEEEcC--CccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCC-------CCeEEEEEc
Q 018675          227 DKLVSCS-DDLTIKIWGA--DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAA-------DDSVQFFVE  296 (352)
Q Consensus       227 ~~l~s~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~-------d~~v~~~~~  296 (352)
                      ++|++++ .|+.|++|++  ...        ..+.....+.. + ..+.+++|++++.+++.+.       +..+.+|..
T Consensus       320 ~~l~~~~~~d~~i~iw~~~~~~~--------~~l~~~~~~~~-~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~  389 (450)
T 2vdu_B          320 PFVAFFVEATKCIIILEMSEKQK--------GDLALKQIITF-P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY  389 (450)
T ss_dssp             SEEEEEETTCSEEEEEEECSSST--------TCEEEEEEEEC-S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred             CEEEEEECCCCeEEEEEeccCCC--------CceeeccEecc-C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence            9999998 8999999987  211        11122233332 3 6789999999877666543       455788865


Q ss_pred             c
Q 018675          297 S  297 (352)
Q Consensus       297 ~  297 (352)
                      .
T Consensus       390 ~  390 (450)
T 2vdu_B          390 N  390 (450)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=7.5e-27  Score=212.82  Aligned_cols=250  Identities=24%  Similarity=0.407  Sum_probs=192.4

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      +.+.++.+|.+.|++++|.        +.++++|+.||+|++|++.++.....    + ..|...|.+++|++  ..+++
T Consensus       164 ~~~~~~~~h~~~v~~l~~~--------~~~l~sg~~dg~i~vwd~~~~~~~~~----~-~~h~~~v~~l~~~~--~~l~s  228 (435)
T 1p22_A          164 ECKRILTGHTGSVLCLQYD--------ERVIITGSSDSTVRVWDVNTGEMLNT----L-IHHCEAVLHLRFNN--GMMVT  228 (435)
T ss_dssp             CEEEEECCCSSCEEEEECC--------SSEEEEEETTSCEEEEESSSCCEEEE----E-CCCCSCEEEEECCT--TEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEC--------CCEEEEEcCCCeEEEEECCCCcEEEE----E-cCCCCcEEEEEEcC--CEEEE
Confidence            3456788999999999983        36899999999999999987754322    2 35888999999974  59999


Q ss_pred             EeCCCcEEEEEccCCce-eeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           92 ASFDATTCIWEDVGGDY-ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      |+.|+.|++||..++.. .....+.+|...|.++.|  +++++++|+.|++|++||+..+.   ++..+.+|...+.++.
T Consensus       229 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~  303 (435)
T 1p22_A          229 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE---FVRTLNGHKRGIACLQ  303 (435)
T ss_dssp             EETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEE
T ss_pred             eeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc---EEEEEcCCCCcEEEEE
Confidence            99999999999876542 223567789999999999  67899999999999999997654   4566788999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          171 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      ++  +..+++|+.|+.|++|++...     .+...+    .+|...|.+++|  ++.+|++|+.||.|++||++......
T Consensus       304 ~~--~~~l~~g~~dg~i~iwd~~~~-----~~~~~~----~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~  370 (435)
T 1p22_A          304 YR--DRLVVSGSSDNTIRLWDIECG-----ACLRVL----EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPR  370 (435)
T ss_dssp             EE--TTEEEEEETTSCEEEEETTTC-----CEEEEE----CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred             eC--CCEEEEEeCCCeEEEEECCCC-----CEEEEE----eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            84  578999999999999987643     233333    368899999998  68899999999999999975322110


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccC
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK  298 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~  298 (352)
                      ..  ........+ ..|...+.++.+ .+.++++++.|+.+++|+...
T Consensus       371 ~~--~~~~~~~~~-~~h~~~v~~l~~-~~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          371 AP--AGTLCLRTL-VEHSGRVFRLQF-DEFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             SC--TTTTEEEEE-CCCSSCCCCEEE-CSSCEEECCSSSEEEEEC---
T ss_pred             cc--ccchheeec-cCCCCCeEEEEe-CCCEEEEEeCCCEEEEEECCC
Confidence            00  000112222 346778888988 456899999999999996543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=1.1e-26  Score=202.19  Aligned_cols=245  Identities=23%  Similarity=0.407  Sum_probs=189.3

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      .+.+|...|++++|+|+      +++|+||+.|++|++|+..+++....    . ..|...+.++  ++++..+++++.+
T Consensus        62 ~~~~~~~~V~~v~~~~~------~~~l~sgs~Dg~v~iw~~~~~~~~~~----~-~~h~~~~~~~--~~~~~~l~s~~~~  128 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKE------GNYLAVGTSSAEVQLWDVQQQKRLRN----M-TSHSARVGSL--SWNSYILSSGSRS  128 (318)
T ss_dssp             ECCSTTCCEEEEEECTT------SSEEEEEETTSEEEEEETTTTEEEEE----E-ECCSSCEEEE--EEETTEEEEEETT
T ss_pred             EecCCCCeEEEEEECCC------CCEEEEEECCCcEEEeecCCceeEEE----e-cCccceEEEe--ecCCCEEEEEecC
Confidence            45678999999999997      57999999999999999988754322    1 3466666654  5567899999999


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe-eEEEEEeecCccCeeEEEEcCC
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPT  174 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~  174 (352)
                      +.+.+|+..... ..+..+.+|...+.++.+++++++|++++.|++|++||+..++. .........|...+.++.++|.
T Consensus       129 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  207 (318)
T 4ggc_A          129 GHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW  207 (318)
T ss_dssp             SEEEEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTT
T ss_pred             CceEeeecCCCc-eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCC
Confidence            999999876543 45667789999999999999999999999999999999875432 1223445567778999999987


Q ss_pred             CCE---EEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe--CCCcEEEEcCCccccc
Q 018675          175 MDV---LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS--DDLTIKIWGADITRMQ  249 (352)
Q Consensus       175 ~~~---l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~  249 (352)
                      +..   +++++.++.|++|+.....     .....     .+...+..+.|+|++..+++++  .|+.|++||++..   
T Consensus       208 ~~~~~~~~~~~~~~~i~lwd~~~~~-----~~~~~-----~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---  274 (318)
T 4ggc_A          208 QSNVLATGGGTSDRHIRIWNVCSGA-----CLSAV-----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---  274 (318)
T ss_dssp             STTEEEEEECTTTCEEEEEETTTCC-----EEEEE-----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---
T ss_pred             CCcEEEEEecCCCCEEEEEeccccc-----ccccc-----cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---
Confidence            653   3466788999999865432     11111     3556799999999999887654  7999999997532   


Q ss_pred             cCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEc
Q 018675          250 SGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE  296 (352)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~  296 (352)
                              +.+..+. .|...|.+++|+|++ +|++++.|++|++|+.
T Consensus       275 --------~~~~~l~-gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          275 --------AKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             --------CEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             --------cEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence                    2233343 478899999999976 8999999999999954

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=5e-26  Score=204.12  Aligned_cols=265  Identities=11%  Similarity=0.152  Sum_probs=192.9

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE-EEEeCCCcEEEEEccCCceeeeEeecccc
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEGHE  118 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~i~~~~~~~~~~~~~~~~h~  118 (352)
                      .++++++.|++|++|+..+++...    .+ . +...+.+++|+|+|+.+ ++++.|+.|++||..+++  ....+..+ 
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~----~~-~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~--~~~~~~~~-   73 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTA----TI-P-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--VIATVPAG-   73 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEE----EE-E-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--EEEEEECS-
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEE----Ee-e-cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCe--EEEEEECC-
Confidence            478899999999999998764322    12 1 23468999999999976 677789999999987764  34455444 


Q ss_pred             CCeeEEEECCCCcEEE-EeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEE-EEEeCCCcEEEEecCCCC
Q 018675          119 NEVKSVSWNASGTLLA-TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVL-FSCSYDNTIKVWWAEDTD  196 (352)
Q Consensus       119 ~~v~~v~~~~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~  196 (352)
                      ..+.+++|+|++++|+ +++.|++|++||+..++   .+..+..+ ..+.+++|+|+++.+ ++++.++.|++|++... 
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~---~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-  148 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT---VAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-  148 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-
T ss_pred             CCccceEECCCCCEEEEEECCCCEEEEEECCCCe---EEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-
Confidence            4899999999999775 55567999999987553   33444433 468999999999977 68888999999987542 


Q ss_pred             CCCceeEeeeeccCCCCcccEEEEEEcCCCCEE-EEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEE
Q 018675          197 SDNWHCVQTISESNNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVH  275 (352)
Q Consensus       197 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  275 (352)
                          .....+.     ....+.+++|+|+++++ ++++.|+.|++||++..+.           ...+.  +...+..+.
T Consensus       149 ----~~~~~~~-----~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----------~~~~~--~~~~~~~~~  206 (391)
T 1l0q_A          149 ----AVINTVS-----VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-----------IDTVK--VEAAPSGIA  206 (391)
T ss_dssp             ----EEEEEEE-----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-----------EEEEE--CSSEEEEEE
T ss_pred             ----cEEEEEe-----cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-----------EEEEe--cCCCccceE
Confidence                2233332     12457899999999887 6778899999999753221           11111  344678889


Q ss_pred             ecCCc-eEEecC---CCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          276 WSREG-IIASGA---ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       276 ~~~~~-~~~s~~---~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +++++ .+++++   .++.+++|+.....         .+.....|. .+.+++|+|+++.++++++.|+.|++||+..
T Consensus       207 ~~~~g~~l~~~~~~~~~~~v~~~d~~~~~---------~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNK---------ITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTTTE---------EEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ECCCCCEEEEEecCcCCCcEEEEECCCCe---------EEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            99876 566555   68999999764321         122233343 5889999999987778999999999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.4e-27  Score=217.46  Aligned_cols=227  Identities=24%  Similarity=0.435  Sum_probs=177.1

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCce---eeeeeeeeecceecceEEEEECC-CC
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSR---FWNCKAVLEEMHTRTVRSCAWSP-SG   86 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~---~~~~~~~~~~~h~~~v~~~~~s~-~~   86 (352)
                      ...+.++.+|...|++++|+|..     ..+|++|+.||+|++|++.....   ...... ....|...|.+++|+| ++
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~p~~~  244 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNPNL-----NGYLLSASDDHTICLWDINATPKEHRVIDAKN-IFTGHTAVVEDVAWHLLHE  244 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECTTS-----TTEEEEECTTSCEEEEETTSCCBGGGEEECSE-EECCCSSCEEEEEECSSCT
T ss_pred             CCCcEEecCCCCCeEEEEeCCCC-----CCeEEEEeCCCeEEEEeCCCCCCCCceeccce-eecCCCCCEeeeEEeCCCC
Confidence            35567788999999999999973     23899999999999999976321   111111 2235888999999999 67


Q ss_pred             CEEEEEeCCCcEEEEEccCCc-eeeeEeeccccCCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeEEEEEeecCcc
Q 018675           87 KLLATASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ  164 (352)
Q Consensus        87 ~~l~s~~~d~~i~i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~  164 (352)
                      .++++++.|+.|++||..... ......+..|...|++++|+|++. +|++|+.|++|++||++...  .++..+.+|..
T Consensus       245 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~  322 (430)
T 2xyi_A          245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKD  322 (430)
T ss_dssp             TEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSS
T ss_pred             CEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCC
Confidence            899999999999999987642 234556678999999999999887 78999999999999997633  23566778999


Q ss_pred             CeeEEEEcCCCC-EEEEEeCCCcEEEEecCCCCCCCce-----eEeeeeccCCCCcccEEEEEEcCCCC-EEEEEeCCCc
Q 018675          165 DVKMVQWHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWH-----CVQTISESNNGHSSTIWALSFNAKGD-KLVSCSDDLT  237 (352)
Q Consensus       165 ~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~-----~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s~~~dg~  237 (352)
                      .|.+++|+|++. ++++++.|+.|++|++.........     ....+.....+|...|.+++|+|++. +|++++.||.
T Consensus       323 ~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~  402 (430)
T 2xyi_A          323 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI  402 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence            999999999985 7899999999999998652211000     00011123347889999999999999 8999999999


Q ss_pred             EEEEcCCc
Q 018675          238 IKIWGADI  245 (352)
Q Consensus       238 i~iwd~~~  245 (352)
                      |++|++..
T Consensus       403 i~iw~~~~  410 (430)
T 2xyi_A          403 MQVWQMAE  410 (430)
T ss_dssp             EEEEEECH
T ss_pred             EEEeEccc
Confidence            99998753

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.6e-25  Score=192.15  Aligned_cols=304  Identities=12%  Similarity=0.127  Sum_probs=181.7

Q ss_pred             eeeeeeecCCc----cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC
Q 018675           11 LREIQTLEGHT----DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG   86 (352)
Q Consensus        11 ~~~~~~~~gH~----~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~   86 (352)
                      +.++.+|+.-.    -.|.++-|-....   ..+.+++++ ..+|++|+..+. ..|...+.. .+|+.+|..+.+.||-
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~v~lw~~~~~-~~~~~~~~~-~~~~~~v~~~~~~~~~   98 (356)
T 2w18_A           25 LQLVSELKNPSGSCSVDVSAMFWERAGC---KEPCIITAC-EDVVSLWKALDA-WQWEKLYTW-HFAEVPVLQIVPVPDV   98 (356)
T ss_dssp             EEEEEEECCCCSSCEEEEEEEEEC-------CEEEEEEEE-SSEEEEEEESSS-SBEEEEEEE-ECCSSCEEEECCCTTC
T ss_pred             eeeeehhcCCCCCeEEEEeeeeeccCCC---CccEEEEec-cceEEEcccCCC-ccceeeEEE-eccCceeEEEEEcCcc
Confidence            35555555333    3555666644321   234566665 579999998876 234444433 4577788888888865


Q ss_pred             CEEEEEe-CCCcEE-EEEcc---C-CceeeeEeeccccCCeeEEEECCCCcEEEEee--CCCcEEEEecCCCCeeEEEEE
Q 018675           87 KLLATAS-FDATTC-IWEDV---G-GDYECVATLEGHENEVKSVSWNASGTLLATCG--RDKSVWIWEVMPGNEFECVSV  158 (352)
Q Consensus        87 ~~l~s~~-~d~~i~-i~~~~---~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~  158 (352)
                      .-|+... .+=.+. ++-..   . ..........+|...|..+   ++++++.+++  .|++|++|++.+..  +.+..
T Consensus        99 ~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG--~~~~s  173 (356)
T 2w18_A           99 YNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDG--GGKEN  173 (356)
T ss_dssp             CSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTS--CEEEE
T ss_pred             cceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCC--ceeee
Confidence            4333222 111111 11110   0 0011122223455455554   5666666643  59999999985533  23456


Q ss_pred             eecCccCeeEEEEcC---CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE------
Q 018675          159 LQGHAQDVKMVQWHP---TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL------  229 (352)
Q Consensus       159 ~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l------  229 (352)
                      +.+|...+..++|+|   ++..|++++.|++|+|||+...     ++++++.. ...+...+.+++|+|+|.++      
T Consensus       174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-----k~l~tL~g-~~~~v~~v~~vafSpdG~~lvs~s~~  247 (356)
T 2w18_A          174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-----QLLKKMHI-DDSYQASVCHKAYSEMGLLFIVLSHP  247 (356)
T ss_dssp             EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-----CEEEEEEC-CC---CCCEEEEEEETTEEEEEEC--
T ss_pred             eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-----cEEEEEcC-CCcceeeeEEEEECCCCCEEEEeccC
Confidence            678898999999999   6789999999999999987643     34455531 11123467888999999876      


Q ss_pred             ------EEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCcccc
Q 018675          230 ------VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLID  303 (352)
Q Consensus       230 ------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~  303 (352)
                            ++|+.|++|++||.+..+...       .....+...|.....+.+++ +..+++++.|++|++|+....    
T Consensus       248 ~~~w~laSGs~D~tIklWd~~tgk~l~-------v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tG----  315 (356)
T 2w18_A          248 CAKESESLRSPVFQLIVINPKTTLSVG-------VMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLG----  315 (356)
T ss_dssp             ----------CCEEEEEEETTTTEEEE-------EEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTC----
T ss_pred             CCcceeeccCCCcEEEEEECCCCEEEE-------EEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCC----
Confidence                  668899999999875332110       00000011222233333433 447899999999999976542    


Q ss_pred             CcccceeeecccccCccee-EEEecCCCcceEEEecCCCeEEEEeec
Q 018675          304 GPSYKMLLKKEKAHDMDVN-SVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       304 ~~~~~~~~~~~~~h~~~i~-~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                           +++.++.+|...+. .++||||++ +|+||+.|++|||||+.
T Consensus       316 -----k~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          316 -----QCTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             -----SEEEEECCC--CCCCEEEECSSSS-EEEEECTTSCEEEEEEC
T ss_pred             -----cEEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcEEEecCC
Confidence                 23445667877665 589999986 68899999999999963

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.6e-27  Score=208.19  Aligned_cols=237  Identities=9%  Similarity=0.033  Sum_probs=167.7

Q ss_pred             EECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC------eeE
Q 018675           81 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN------EFE  154 (352)
Q Consensus        81 ~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~------~~~  154 (352)
                      .+.+++.++++|+.|++|++||..+++.  +..+.  ...|.++.|+|+   +++++.|++|++|+.....      ...
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~--~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~  115 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKT--ITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNK  115 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSC--EEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcE--EEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcc
Confidence            3456788999999999999999877643  33333  467888888887   9999999999999764210      111


Q ss_pred             EEEEe-ecCccCeeEEEEcC--CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          155 CVSVL-QGHAQDVKMVQWHP--TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       155 ~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                      .+... .+|...|.+++|+|  ++.++++++.|+.|++|++....     +....   ...|...|.+++|+|++.+|++
T Consensus       116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----~~~~~---~~~~~~~i~~~~~~pdg~~las  187 (343)
T 3lrv_A          116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----QYIVH---SAKSDVEYSSGVLHKDSLLLAL  187 (343)
T ss_dssp             EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----EEEEE---CCCSSCCCCEEEECTTSCEEEE
T ss_pred             eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----EEEEE---ecCCCCceEEEEECCCCCEEEE
Confidence            12222 35667899999999  99999999999999999876532     12111   1235567999999999999999


Q ss_pred             EeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCccccee
Q 018675          232 CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML  310 (352)
Q Consensus       232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~  310 (352)
                      |+.||.|++||++.....          ...+...|...+.++.|++++ ++++++ ++.+++|+........     . 
T Consensus       188 g~~dg~i~iwd~~~~~~~----------~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~-----~-  250 (343)
T 3lrv_A          188 YSPDGILDVYNLSSPDQA----------SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL-----A-  250 (343)
T ss_dssp             ECTTSCEEEEESSCTTSC----------CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB-----S-
T ss_pred             EcCCCEEEEEECCCCCCC----------ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce-----e-
Confidence            999999999998643211          022233367889999999987 677777 5599999875432211     0 


Q ss_pred             eecccccCccee--EEEecCCCcceEEEecC-CCeEEEEeecc
Q 018675          311 LKKEKAHDMDVN--SVQWSPGERRLLASASD-DGMIKIWELAN  350 (352)
Q Consensus       311 ~~~~~~h~~~i~--~~~~sp~~~~~l~s~~~-Dg~i~iw~~~~  350 (352)
                      +.....|...+.  +++|+|+++ +|++++. |+.|+||++.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          251 YPTYTIPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             SCCCBC-----CCEEEEECTTSS-EEEEEETTTTEEEEEEECT
T ss_pred             ecccccccccccceEEEECCCCC-EEEEecCCCCcEEEEEEcc
Confidence            111222444444  699999987 5777777 99999999854

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=1.2e-26  Score=208.75  Aligned_cols=210  Identities=14%  Similarity=0.157  Sum_probs=144.4

Q ss_pred             eeeecCCccceEEEEEccCCCC--CCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC-CEEE
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGV--DGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG-KLLA   90 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~--~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~   90 (352)
                      +..+.||.+.|++++|+|....  ...+++|||||.|++|||||+.+......     ...|..+|.+++|+|++ .+|+
T Consensus       129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~-----~~~~~~~v~~v~~~p~~~~~l~  203 (393)
T 4gq1_A          129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA-----GYPLSSPGISVQFRPSNPNQLI  203 (393)
T ss_dssp             ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE-----EEECSSCEEEEEEETTEEEEEE
T ss_pred             ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee-----ecCCCCCcEEEEECCCCCceEE
Confidence            3457899999999999983211  11257999999999999999876543221     13477899999999987 4799


Q ss_pred             EEeCCCcEEEEEccCCceee-----------------------eEeeccccCCeeEEEEC-CCCcEEEEeeCCCcEEEEe
Q 018675           91 TASFDATTCIWEDVGGDYEC-----------------------VATLEGHENEVKSVSWN-ASGTLLATCGRDKSVWIWE  146 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~-----------------------~~~~~~h~~~v~~v~~~-~~~~~l~s~~~d~~v~vwd  146 (352)
                      +|+.|++|++||..++....                       .....+|...|.++.|+ +++..|++++.|+++++||
T Consensus       204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd  283 (393)
T 4gq1_A          204 VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWN  283 (393)
T ss_dssp             EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred             ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence            99999999999976543210                       11234678889999986 7999999999999999999


Q ss_pred             cCCCCeeEEEEEeecCccC------------------eeEEEEcC--CCCEEEEEeCCCcEEEEecCCCCCCCceeEeee
Q 018675          147 VMPGNEFECVSVLQGHAQD------------------VKMVQWHP--TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI  206 (352)
Q Consensus       147 ~~~~~~~~~~~~~~~h~~~------------------v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~  206 (352)
                      +..++...   .+..|...                  .....++|  ++.++++|+.|+.|++|+......     ...+
T Consensus       284 ~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-----~~~~  355 (393)
T 4gq1_A          284 LFANNDYN---EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS-----NSIP  355 (393)
T ss_dssp             C----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC-----CEEE
T ss_pred             CccCCCCc---eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE-----EEEe
Confidence            86543221   11122211                  12233444  233567788999999998765432     1112


Q ss_pred             eccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          207 SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       207 ~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iw  241 (352)
                          .+|..+|.+|+|+|+|++||+++.+| +.+|
T Consensus       356 ----~~~~~~V~svafspdG~~LA~as~~G-v~lv  385 (393)
T 4gq1_A          356 ----IQLGMPIVDFCWHQDGSHLAIATEGS-VLLT  385 (393)
T ss_dssp             ----EECSSCEEEEEECTTSSEEEEEESSE-EEEE
T ss_pred             ----cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEE
Confidence                24778999999999999999999877 4445

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1.1e-25  Score=193.08  Aligned_cols=179  Identities=11%  Similarity=0.108  Sum_probs=126.6

Q ss_pred             CCeEEEEecCCCceeeeeeeeeecceecceEEEEECC---CCCEEEEEeCCCcEEEEEccCCceeeeEeecccc---CCe
Q 018675           48 DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP---SGKLLATASFDATTCIWEDVGGDYECVATLEGHE---NEV  121 (352)
Q Consensus        48 D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~---~~v  121 (352)
                      |++|++|++....+...   . ...|...++.++|+|   ++.+|++|+.|++|+|||..+++  ++.++.+|.   ..+
T Consensus       156 d~~V~~~~~s~dG~~~~---s-~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk--~l~tL~g~~~~v~~v  229 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKE---N-QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ--LLKKMHIDDSYQASV  229 (356)
T ss_dssp             TCEEEEEEECTTSCEEE---E-EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC--EEEEEECCC---CCC
T ss_pred             CCcEEEEEECCCCceee---e-eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc--EEEEEcCCCcceeee
Confidence            88888888854332111   1 124777888899998   77999999999999999998874  466676554   357


Q ss_pred             eEEEECCCCcEE------------EEeeCCCcEEEEecCCCCeeEEEEE--eecCccCeeEEEEcCCCCEEEEEeCCCcE
Q 018675          122 KSVSWNASGTLL------------ATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDVKMVQWHPTMDVLFSCSYDNTI  187 (352)
Q Consensus       122 ~~v~~~~~~~~l------------~s~~~d~~v~vwd~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d~~i  187 (352)
                      .+++|+|+|.++            ++|+.|++|++||...+........  ..+|...+.+..+  ++..+++++.|++|
T Consensus       230 ~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTI  307 (356)
T 2w18_A          230 CHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTI  307 (356)
T ss_dssp             EEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCE
T ss_pred             EEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcE
Confidence            778999999876            5688999999999876543221110  1356554443333  37789999999999


Q ss_pred             EEEecCCCCCCCceeEeeeeccCCCCcccEE-EEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIW-ALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       188 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      +|||+...     ++.+++.    +|...+. +++|+|+|++|++|+.|++|||||.
T Consensus       308 kIWDl~tG-----k~l~tL~----gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          308 AIWDLLLG-----QCTALLP----PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEETTTC-----SEEEEEC----CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEECCCC-----cEEEEec----CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99987653     3444443    5766555 5899999999999999999999974

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=2.7e-24  Score=190.68  Aligned_cols=244  Identities=16%  Similarity=0.175  Sum_probs=166.3

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEE-EEeeCCCcEEEEecCC
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMP  149 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~vwd~~~  149 (352)
                      ..|...|++++|+|||++|++|+.++ +++|+..+..  .....  +...+..+.+.++++.+ ++++.|++|++||+..
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA--HIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE--EEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc--eeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            45889999999999999999988664 7899976543  22222  22357888998888776 5778889999999876


Q ss_pred             CCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE
Q 018675          150 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL  229 (352)
Q Consensus       150 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  229 (352)
                      +.   ++..+. +...|.++.++++.  ++++ .|+.|++|++.....    .+..+..       +...+++++  .++
T Consensus        91 ~~---~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~----~~~~~~~-------~~~~~~~s~--~~l  150 (355)
T 3vu4_A           91 KQ---DVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWK----RITDDIR-------FGGVCEFSN--GLL  150 (355)
T ss_dssp             TE---EEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCC----BSSCCEE-------EEEEEEEET--TEE
T ss_pred             Cc---EEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCce----eeEEecc-------CCceEEEEc--cEE
Confidence            54   334444 56689999998863  3443 488999998765411    1112211       233456666  556


Q ss_pred             EE--EeCCCcEEEEcCCccccccC--CC--Ccccee-eEEeecccCcceEEEEecCCc-eEEecCCCCe-EEEEEccCCc
Q 018675          230 VS--CSDDLTIKIWGADITRMQSG--DG--YASWRH-LCTISGYHDRTIFSVHWSREG-IIASGAADDS-VQFFVESKDD  300 (352)
Q Consensus       230 ~s--~~~dg~i~iwd~~~~~~~~~--~~--~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~-v~~~~~~~~~  300 (352)
                      +.  |+.||.|++||++.......  ..  .....+ ...+ ..|...+.+++|++++ ++++++.|++ +++|+.....
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEE-CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE-EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            65  68999999999864321000  00  000011 2222 3578899999999986 7999999998 9999765321


Q ss_pred             cccCcccceeeeccc-c-cCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          301 LIDGPSYKMLLKKEK-A-HDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       301 ~~~~~~~~~~~~~~~-~-h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                               .+.... + |...|++++|+|+++ +|++++.|++|+||++..
T Consensus       230 ---------~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          230 ---------LVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             ---------EEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSC
T ss_pred             ---------EEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccC
Confidence                     222333 4 899999999999986 688999999999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=8.5e-23  Score=183.06  Aligned_cols=244  Identities=12%  Similarity=0.121  Sum_probs=178.2

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccE-EEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPV-FASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~-l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      +.+..+.+|. .+.+++|+|+.      .. +++++.|++|++|+..+++...    .+.  +...+.+++|+|+++.|+
T Consensus        23 ~~~~~~~~~~-~~~~~~~s~dg------~~l~~~~~~d~~i~v~d~~~~~~~~----~~~--~~~~v~~~~~spdg~~l~   89 (391)
T 1l0q_A           23 KVTATIPVGS-NPMGAVISPDG------TKVYVANAHSNDVSIIDTATNNVIA----TVP--AGSSPQGVAVSPDGKQVY   89 (391)
T ss_dssp             EEEEEEECSS-SEEEEEECTTS------SEEEEEEGGGTEEEEEETTTTEEEE----EEE--CSSSEEEEEECTTSSEEE
T ss_pred             eEEEEeecCC-CcceEEECCCC------CEEEEECCCCCeEEEEECCCCeEEE----EEE--CCCCccceEECCCCCEEE
Confidence            3445666665 58999999973      44 5788899999999998764322    121  234899999999999875


Q ss_pred             E-EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEE-EEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeE
Q 018675           91 T-ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM  168 (352)
Q Consensus        91 s-~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~  168 (352)
                      . ++.++.|.+||..+++.  ...+. +...+.+++|+|+++.+ ++++.|+.|++||+..++   .+..+..+ ..+..
T Consensus        90 ~~~~~~~~v~v~d~~~~~~--~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~-~~~~~  162 (391)
T 1l0q_A           90 VTNMASSTLSVIDTTSNTV--AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA---VINTVSVG-RSPKG  162 (391)
T ss_dssp             EEETTTTEEEEEETTTTEE--EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEECC-SSEEE
T ss_pred             EEECCCCEEEEEECCCCeE--EEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc---EEEEEecC-CCcce
Confidence            4 55679999999877643  34444 34578999999999976 788889999999986553   34444444 45789


Q ss_pred             EEEcCCCCEE-EEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe---CCCcEEEEcCC
Q 018675          169 VQWHPTMDVL-FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS---DDLTIKIWGAD  244 (352)
Q Consensus       169 ~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~---~dg~i~iwd~~  244 (352)
                      +.|+|+++.+ ++++.++.|++|++...     .....+     .+...+.+++|+|++++|++++   .++.|++||++
T Consensus       163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~-----~~~~~~-----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          163 IAVTPDGTKVYVANFDSMSISVIDTVTN-----SVIDTV-----KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTT-----EEEEEE-----ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCCC-----eEEEEE-----ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence            9999999877 57778899999987543     223333     2446789999999999998887   68999999975


Q ss_pred             ccccccCCCCccceeeEEeecccCcceEEEEecCCc-eE-EecCCCCeEEEEEccC
Q 018675          245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II-ASGAADDSVQFFVESK  298 (352)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~-~s~~~d~~v~~~~~~~  298 (352)
                      ..+           ....+..  ...+..+.+++++ .+ ++++.|+.+++|+...
T Consensus       233 ~~~-----------~~~~~~~--~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          233 TNK-----------ITARIPV--GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             TTE-----------EEEEEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCe-----------EEEEEec--CCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            321           1222222  2346788999876 44 6778899999998754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=1.1e-23  Score=191.41  Aligned_cols=240  Identities=12%  Similarity=0.110  Sum_probs=177.3

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeE---eeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCC
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVA---TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~---~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~  151 (352)
                      ..+.+++|+|+++++++++.|+.|.+||..+++.....   .+.+|.+.|.+++|++++.++++++.|++|++||+..+.
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            45678999998888888888999999998776543211   345788899999999999999999999999999987554


Q ss_pred             eeEEEEEeecCccCeeEEEEcCCCCEEEE-EeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE
Q 018675          152 EFECVSVLQGHAQDVKMVQWHPTMDVLFS-CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV  230 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  230 (352)
                         .+..+..|...+.+++|+|++..+++ ++.|+.|++|++...     .....+.     +...+.+++|+|++++++
T Consensus       203 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-----~~~~~~~-----~~~~~~~~~~~~~g~~l~  269 (433)
T 3bws_A          203 ---YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-----LEIRKTD-----KIGLPRGLLLSKDGKELY  269 (433)
T ss_dssp             ---EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT-----EEEEECC-----CCSEEEEEEECTTSSEEE
T ss_pred             ---EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC-----cEEEEec-----CCCCceEEEEcCCCCEEE
Confidence               34556678889999999999998754 457999999987542     2222221     234589999999999999


Q ss_pred             EEe--------CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCCc
Q 018675          231 SCS--------DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDD  300 (352)
Q Consensus       231 s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~  300 (352)
                      +++        .||.|++||++..+.           ...+  .+...+..+.+++++  .+++++.++.+++|+.....
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~~~-----------~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~  336 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKEKL-----------IDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK  336 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTTEE-----------EEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEECCCCccccCCCeEEEEECCCCcE-----------Eeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence            888        588999999753221           1111  123357788899876  56777899999999765321


Q ss_pred             cccCcccceeeecccccCcceeEEEecCCCcceEEEecC--------------CCeEEEEeecc
Q 018675          301 LIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD--------------DGMIKIWELAN  350 (352)
Q Consensus       301 ~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~--------------Dg~i~iw~~~~  350 (352)
                               .... ..+...+.+++|+|+++.+++++..              ||.|++||+..
T Consensus       337 ---------~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~  390 (433)
T 3bws_A          337 ---------VQKS-IPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT  390 (433)
T ss_dssp             ---------EEEE-EECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred             ---------EEEE-ecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence                     1122 2356779999999998755443332              67999999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=1.6e-22  Score=177.57  Aligned_cols=289  Identities=12%  Similarity=0.161  Sum_probs=187.5

Q ss_pred             EEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC-CcEEEEEcc--CCceeeeEeeccc
Q 018675           41 VFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD-ATTCIWEDV--GGDYECVATLEGH  117 (352)
Q Consensus        41 ~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-~~i~i~~~~--~~~~~~~~~~~~h  117 (352)
                      ++++++.|+.|++|++...... .....  ..+...+.+++|+|+|++|++++.+ +.+.+|+..  +++...+..+..+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   83 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGAL-TLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   83 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCE-EEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEeCCCCCeEEEEEECCCCcE-EEeee--EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence            4555588999999998542211 11111  2355678899999999998888886 899999986  5555555555443


Q ss_pred             cCCeeEEEECCCCcEEEEeeC-CCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEe-CCCcEEEEecCCC
Q 018675          118 ENEVKSVSWNASGTLLATCGR-DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDT  195 (352)
Q Consensus       118 ~~~v~~v~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~  195 (352)
                      . .+..++|+|++++|++++. ++.|.+||+..+........+..+ ..+.+++|+|+++.+++++ .++.|.+|++...
T Consensus        84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  161 (343)
T 1ri6_A           84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDD  161 (343)
T ss_dssp             S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence            3 7899999999998766654 889999998533333344444433 4588899999999888777 8999999987541


Q ss_pred             CCCCceeEe--eeeccCCCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEcCCccccccCCCCccceeeEEeecc--cCcc
Q 018675          196 DSDNWHCVQ--TISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLCTISGY--HDRT  270 (352)
Q Consensus       196 ~~~~~~~~~--~~~~~~~~h~~~i~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  270 (352)
                      .  ......  ...   ......+..++|+|++++++.+ ..++.|++|+++...-    ..........+...  ....
T Consensus       162 ~--~~~~~~~~~~~---~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~  232 (343)
T 1ri6_A          162 G--HLVAQDPAEVT---TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG----NIECVQTLDMMPENFSDTRW  232 (343)
T ss_dssp             S--CEEEEEEEEEE---CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS----CCEEEEEEECSCTTCCSCCC
T ss_pred             C--ceeeecccccc---cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC----cEEEEeeccccCccccccCC
Confidence            1  111111  111   1123568889999999977554 4889999999752100    00000011111111  1234


Q ss_pred             eEEEEecCCc-eE-EecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          271 IFSVHWSREG-II-ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       271 i~~~~~~~~~-~~-~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      +..+.|++++ ++ ++...++.+.+|+.....    .. ...+.....+. .+.+++|+|+++.+++++..|+.|.+|++
T Consensus       233 ~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~----~~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          233 AADIHITPDGRHLYACDRTASLITVFSVSEDG----SV-LSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTS----CC-EEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             ccceEECCCCCEEEEEecCCCEEEEEEEcCCC----Cc-eEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence            5678899876 44 466678999999765211    00 11122222333 38999999999877766668999999976


Q ss_pred             c
Q 018675          349 A  349 (352)
Q Consensus       349 ~  349 (352)
                      .
T Consensus       307 d  307 (343)
T 1ri6_A          307 V  307 (343)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=9.7e-23  Score=184.40  Aligned_cols=269  Identities=14%  Similarity=0.162  Sum_probs=188.4

Q ss_pred             eeecCCccceEEEEEccCC--------CCCCCccEEEEeeCC------CeEEEEecCCCceeeeeeeeeecceecceEEE
Q 018675           15 QTLEGHTDRVWSLAWKPTA--------GVDGVAPVFASCSGD------KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSC   80 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~--------~~~~~~~~l~s~s~D------~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~   80 (352)
                      .++.+|...+..+++++.+        .....+..++.++.+      ++|++||......    . .+ ..|...+.++
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~----~-~l-~~~~~~v~~~  184 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ----F-VV-HRSPQPLMSP  184 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC----E-EE-EEESSCEEEE
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC----E-EE-eCCCCcceee
Confidence            4577888888877776520        000113456666654      7999999875321    1 11 2377899999


Q ss_pred             EECCCCCEEEEEeCCC---cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEE-EeeCCCc--EEEEecCCCCeeE
Q 018675           81 AWSPSGKLLATASFDA---TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKS--VWIWEVMPGNEFE  154 (352)
Q Consensus        81 ~~s~~~~~l~s~~~d~---~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~--v~vwd~~~~~~~~  154 (352)
                      +|+|||+.|++++.|+   .|.+||..+++..   .+..|...+.+++|+|+|+.|+ +++.|+.  |.+||+..+.   
T Consensus       185 ~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---  258 (415)
T 2hqs_A          185 AWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---  258 (415)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCEE---EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---
T ss_pred             EEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---
Confidence            9999999999999885   9999998876532   4556788999999999999877 6666654  9999987553   


Q ss_pred             EEEEeecCccCeeEEEEcCCCCEEEEEeC-CC--cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DN--TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                       ...+..|...+.+++|+|+++.|+.++. ++  .|.+|+.....      ...+    ..+...+.+++|+|+|++|+.
T Consensus       259 -~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------~~~l----~~~~~~~~~~~~spdG~~l~~  327 (415)
T 2hqs_A          259 -IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------PQRI----TWEGSQNQDADVSSDGKFMVM  327 (415)
T ss_dssp             -EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------CEEC----CCSSSEEEEEEECTTSSEEEE
T ss_pred             -EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------EEEE----ecCCCcccCeEECCCCCEEEE
Confidence             2345677788999999999998888876 45  56666654432      1111    135567889999999999998


Q ss_pred             EeCC---CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCC---eEEEEEccCCccccC
Q 018675          232 CSDD---LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADD---SVQFFVESKDDLIDG  304 (352)
Q Consensus       232 ~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~---~v~~~~~~~~~~~~~  304 (352)
                      ++.+   ..|.+||++....            ..+.. + ..+..+.|+|++ +++.++.++   .+++|+....     
T Consensus       328 ~~~~~g~~~i~~~d~~~~~~------------~~l~~-~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-----  388 (415)
T 2hqs_A          328 VSSNGGQQHIAKQDLATGGV------------QVLSS-T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-----  388 (415)
T ss_dssp             EEECSSCEEEEEEETTTCCE------------EECCC-S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-----
T ss_pred             EECcCCceEEEEEECCCCCE------------EEecC-C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-----
Confidence            8764   5899998753221            11111 2 267888999987 566666665   6777754321     


Q ss_pred             cccceeeecccccCcceeEEEecCCC
Q 018675          305 PSYKMLLKKEKAHDMDVNSVQWSPGE  330 (352)
Q Consensus       305 ~~~~~~~~~~~~h~~~i~~~~~sp~~  330 (352)
                           ......+|.+.|.+++|+|-.
T Consensus       389 -----~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          389 -----FKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             -----CEEECCCSSSEEEEEEECCCC
T ss_pred             -----cEEEeeCCCCCCcCCcccccc
Confidence                 123456788999999999953

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=4.7e-23  Score=186.48  Aligned_cols=281  Identities=10%  Similarity=0.083  Sum_probs=190.0

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEee----CCC----eEEEEec--CCCceeeeeeeeeecceecceEEEEECC-----
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCS----GDK----TVRIWEQ--SASSRFWNCKAVLEEMHTRTVRSCAWSP-----   84 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s----~D~----~v~~w~~--~~~~~~~~~~~~~~~~h~~~v~~~~~s~-----   84 (352)
                      +...|...+|.+..     ...+++|+    .||    +++|||.  .+++.+....  + ..|...++.+++++     
T Consensus        61 ~~~~~~~~~w~~~g-----~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~d~~~  132 (415)
T 2hqs_A           61 SAQEVQPAAWSALG-----IDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS--Y-KVNKQWLRYAGHTASDEVF  132 (415)
T ss_dssp             SGGGCCHHHHHTTT-----CCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE--E-EECGGGHHHHHHHHHHHHH
T ss_pred             cccCcCHHHHHhcC-----CCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE--E-EcChhHHHHHHHHHHHHHH
Confidence            33466677777753     35777886    567    9999999  7765432211  1 23555565555553     


Q ss_pred             ---------CCCEEEEEeCC------CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCC---cEEEEe
Q 018675           85 ---------SGKLLATASFD------ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK---SVWIWE  146 (352)
Q Consensus        85 ---------~~~~l~s~~~d------~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~---~v~vwd  146 (352)
                               .+..++.++.+      +.|++||..+..   ...+.+|...|.+++|+|+|+.|++++.|+   .|++||
T Consensus       133 ~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~---~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d  209 (415)
T 2hqs_A          133 EKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN---QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQT  209 (415)
T ss_dssp             HHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS---CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             HHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC---CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEE
Confidence                     25666666654      789999986543   345667889999999999999999999885   999999


Q ss_pred             cCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE-EEeCCCc--EEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc
Q 018675          147 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNT--IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN  223 (352)
Q Consensus       147 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~  223 (352)
                      +..+..    ..+..|...+.+++|+|+++.|+ +++.++.  |.+|++....      ...+    ..|...+.+++|+
T Consensus       210 ~~tg~~----~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~------~~~l----~~~~~~~~~~~~s  275 (415)
T 2hqs_A          210 LANGAV----RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ------IRQV----TDGRSNNTEPTWF  275 (415)
T ss_dssp             TTTCCE----EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC------EEEC----CCCSSCEEEEEEC
T ss_pred             CCCCcE----EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC------EEeC----cCCCCcccceEEC
Confidence            976542    23556777899999999999777 6666665  8888765431      1222    2466789999999


Q ss_pred             CCCCEEEEEeC-CC--cEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCC---CeEEEEEc
Q 018675          224 AKGDKLVSCSD-DL--TIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAAD---DSVQFFVE  296 (352)
Q Consensus       224 ~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d---~~v~~~~~  296 (352)
                      |+|++|+.++. ++  .|.+||++.....            .+ ..+...+..+.|++++ +++.++.+   ..+++|+.
T Consensus       276 pdg~~l~~~s~~~g~~~i~~~d~~~~~~~------------~l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~  342 (415)
T 2hqs_A          276 PDSQNLAFTSDQAGRPQVYKVNINGGAPQ------------RI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL  342 (415)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTSSCCE------------EC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             CCCCEEEEEECCCCCcEEEEEECCCCCEE------------EE-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence            99999988776 55  5666665432110            11 1234457788999987 55555543   47888865


Q ss_pred             cCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCC---eEEEEeecc
Q 018675          297 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG---MIKIWELAN  350 (352)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg---~i~iw~~~~  350 (352)
                      .....          .....|. .+.+++|+|+++. |++++.|+   .|.+|++..
T Consensus       343 ~~~~~----------~~l~~~~-~~~~~~~spdg~~-l~~~s~~~~~~~l~~~d~~g  387 (415)
T 2hqs_A          343 ATGGV----------QVLSSTF-LDETPSLAPNGTM-VIYSSSQGMGSVLNLVSTDG  387 (415)
T ss_dssp             TTCCE----------EECCCSS-SCEEEEECTTSSE-EEEEEEETTEEEEEEEETTS
T ss_pred             CCCCE----------EEecCCC-CcCCeEEcCCCCE-EEEEEcCCCccEEEEEECCC
Confidence            43211          1123343 7999999999975 55666666   789998753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=4.8e-21  Score=178.73  Aligned_cols=306  Identities=12%  Similarity=0.162  Sum_probs=204.7

Q ss_pred             eeeeeec-CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEec--CCCceeeeeeeeeecceecceEEEEECC----
Q 018675           12 REIQTLE-GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQ--SASSRFWNCKAVLEEMHTRTVRSCAWSP----   84 (352)
Q Consensus        12 ~~~~~~~-gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~--~~~~~~~~~~~~~~~~h~~~v~~~~~s~----   84 (352)
                      +.+.++. ||.  +.+++|+|+      +++|++++.|++|++||+  .+.+.    ...+.  +...+..++|+|    
T Consensus       170 ~~~~~i~~g~~--~~~v~~spd------g~~l~v~~~d~~V~v~D~~~~t~~~----~~~i~--~g~~p~~va~sp~~~~  235 (543)
T 1nir_A          170 KIVKVIDTGYA--VHISRMSAS------GRYLLVIGRDARIDMIDLWAKEPTK----VAEIK--IGIEARSVESSKFKGY  235 (543)
T ss_dssp             CEEEEEECSTT--EEEEEECTT------SCEEEEEETTSEEEEEETTSSSCEE----EEEEE--CCSEEEEEEECCSTTC
T ss_pred             eEEEEEecCcc--cceEEECCC------CCEEEEECCCCeEEEEECcCCCCcE----EEEEe--cCCCcceEEeCCCcCC
Confidence            3455666 454  889999997      579999999999999999  55432    22222  345679999999    


Q ss_pred             CCCEEEEEeC-CCcEEEEEccCCceeeeEeecc----------ccC-CeeEEEECCCCc-EEEEeeCCCcEEEEecCCCC
Q 018675           85 SGKLLATASF-DATTCIWEDVGGDYECVATLEG----------HEN-EVKSVSWNASGT-LLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        85 ~~~~l~s~~~-d~~i~i~~~~~~~~~~~~~~~~----------h~~-~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~  151 (352)
                      ||++|++++. ++++.+||..+.+  ++..+..          |.+ .+.++.++|++. ++++...+++|.+||.....
T Consensus       236 dg~~l~v~~~~~~~v~v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~  313 (543)
T 1nir_A          236 EDRYTIAGAYWPPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID  313 (543)
T ss_dssp             TTTEEEEEEEESSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred             CCCEEEEEEccCCeEEEEeccccc--cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence            9999998884 8999999976654  3444432          333 688999999765 56777889999999986554


Q ss_pred             eeEEEEEeecCccCeeEEEEcCCCCEEEEEe-CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC-CCEE
Q 018675          152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKL  229 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l  229 (352)
                      ... +..+ .+...+..+.|+|+++++++++ .++.|.+||....     ++...+......|......+ ++|+ +..+
T Consensus       314 ~l~-~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-----~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~  385 (543)
T 1nir_A          314 NLT-VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-----RLSALVDVGKTPHPGRGANF-VHPKYGPVW  385 (543)
T ss_dssp             SCE-EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-----EEEEEEECSSSBCCTTCEEE-EETTTEEEE
T ss_pred             cce-eEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-----eEEEeeccCCCCCCCCCccc-CCCCCccEE
Confidence            332 2222 2455677899999999776555 5889999986543     34444432223354433333 4777 6667


Q ss_pred             EEEe-CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecC-------CCCeEEEEEccCCc
Q 018675          230 VSCS-DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGA-------ADDSVQFFVESKDD  300 (352)
Q Consensus       230 ~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~-------~d~~v~~~~~~~~~  300 (352)
                      +++. .|++|++||++...-    ....|+....+.. +......+.++|++ .+.+++       .+++|.+|+.....
T Consensus       386 ~s~~~~d~~V~v~d~~~~~~----~~~~~~~v~~l~~-~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          386 STSHLGDGSISLIGTDPKNH----PQYAWKKVAELQG-QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             EEEBSSSSEEEEEECCTTTC----TTTBTSEEEEEEC-SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             EeccCCCceEEEEEeCCCCC----chhcCeEEEEEEc-CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence            7775 689999999763110    0012444444443 44556677888886 555554       26799999875432


Q ss_pred             cccCccccee-eec---ccccCcceeEEEecCCCcceEEEe----cCCCeEEEEeecc
Q 018675          301 LIDGPSYKML-LKK---EKAHDMDVNSVQWSPGERRLLASA----SDDGMIKIWELAN  350 (352)
Q Consensus       301 ~~~~~~~~~~-~~~---~~~h~~~i~~~~~sp~~~~~l~s~----~~Dg~i~iw~~~~  350 (352)
                      ..    ...+ +..   ...+...+..++|+|+|+.++++.    +.|+.|.|||..+
T Consensus       461 ~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          461 AK----YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             SC----CEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             CC----eEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence            21    0111 110   234577899999999999877664    2589999999865

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=9.9e-21  Score=165.68  Aligned_cols=284  Identities=11%  Similarity=0.045  Sum_probs=181.9

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC-CCcEEEEEccCCceeeeEeeccc
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF-DATTCIWEDVGGDYECVATLEGH  117 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~i~i~~~~~~~~~~~~~~~~h  117 (352)
                      ...+++++.+++|.+||..+++....    + ..+...+ .++|+|+|+.+++++. ++.+.+||..+++.. ...+..+
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~----~-~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~~~   82 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQ----I-TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-VVAIQEG   82 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEE----E-ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-EEEEEEC
T ss_pred             CEEEEEecCCCeEEEEeCcccceeee----E-EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-EEecccC
Confidence            35688999999999999987653222    1 1234455 9999999997666555 889999998776531 3344445


Q ss_pred             cCCeeEEEECCCCcEEEEeeCCC---cEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE-EEeCCCc-EEEEec
Q 018675          118 ENEVKSVSWNASGTLLATCGRDK---SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNT-IKVWWA  192 (352)
Q Consensus       118 ~~~v~~v~~~~~~~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~-i~iw~~  192 (352)
                      ..+..+++|+|++++++++..++   .|.+||+..+..   +..+.. ......++|+|+++.++ +...++. +.+|++
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~---~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF---ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE---EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe---EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence            55555599999999988665553   899999865532   333333 33568999999998554 4556688 999987


Q ss_pred             CCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE-EEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcce
Q 018675          193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI  271 (352)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  271 (352)
                      .....  ..... ....  .....+..++|+|+|++++ ++..++.|++||++..+.        ......+.  ....+
T Consensus       159 ~~~g~--~~~~~-~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~--------~~~~~~~~--~~~~~  223 (331)
T 3u4y_A          159 DADGV--LFDTG-QEFI--SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN--------ITLLNAVG--TNNLP  223 (331)
T ss_dssp             CTTCC--EEEEE-EEEE--CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS--------CEEEEEEE--CSSCC
T ss_pred             CCCCc--EeecC-Cccc--cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc--------cceeeecc--CCCCC
Confidence            64211  11110 0001  2234578999999999654 555789999999753221        01122222  23456


Q ss_pred             EEEEecCCce--EEecCCCCeEEEEEccCCccccCcccceeeec---ccccCcceeEEEecCCCcceEEEecCCCeEEEE
Q 018675          272 FSVHWSREGI--IASGAADDSVQFFVESKDDLIDGPSYKMLLKK---EKAHDMDVNSVQWSPGERRLLASASDDGMIKIW  346 (352)
Q Consensus       272 ~~~~~~~~~~--~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw  346 (352)
                      ..+.+++++.  +++...++.+.+|+.....+..   ...+...   ........+.++|+|+++.+++++..++.|.||
T Consensus       224 ~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  300 (331)
T 3u4y_A          224 GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF---VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVF  300 (331)
T ss_dssp             CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE---EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ceEEECCCCCEEEEEEcCCCEEEEEECCCCceee---ecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEE
Confidence            6788898873  4455567788888765432210   0000000   011112236699999998877888888999999


Q ss_pred             eeccC
Q 018675          347 ELANT  351 (352)
Q Consensus       347 ~~~~~  351 (352)
                      ++..+
T Consensus       301 d~~~~  305 (331)
T 3u4y_A          301 TISGK  305 (331)
T ss_dssp             ETTSC
T ss_pred             EecCC
Confidence            98753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=1.7e-20  Score=165.44  Aligned_cols=283  Identities=10%  Similarity=0.099  Sum_probs=182.1

Q ss_pred             eCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC---CCcEEEEEccCCceeeeEeeccccCCee
Q 018675           46 SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF---DATTCIWEDVGGDYECVATLEGHENEVK  122 (352)
Q Consensus        46 s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~i~i~~~~~~~~~~~~~~~~h~~~v~  122 (352)
                      +.++.+.+|.++...........  ..+...+..++|+|+|+ |++++.   ++.|.+|+..++....+..+..+...+.
T Consensus        13 ~~~~~i~v~~~d~~tg~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~   89 (347)
T 3hfq_A           13 KTSQGIYQGTLDTTAKTLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPA   89 (347)
T ss_dssp             SSCCEEEEEEEETTTTEEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCS
T ss_pred             CCCCCEEEEEEcCCCCeEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCE
Confidence            34678888877653221111111  12345678899999999 554443   6899999987776555555556777899


Q ss_pred             EEEECCCCcEEEEee-CCCcEEEEecCCCCeeEEEEEeec---------CccCeeEEEEcCCCCEEEEEeCCCcEEEEec
Q 018675          123 SVSWNASGTLLATCG-RDKSVWIWEVMPGNEFECVSVLQG---------HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA  192 (352)
Q Consensus       123 ~v~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~---------h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~  192 (352)
                      .++|+|++++|++++ .++++.+|++........+..+..         +...+.+++|+|+++++++...++.|.+|++
T Consensus        90 ~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~  169 (347)
T 3hfq_A           90 YVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNV  169 (347)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEE
Confidence            999999999888887 789999999864433333333322         1124778999999996666667889999987


Q ss_pred             CCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE-EeCCCcEEEEcCCccccccCCCCccceeeEEeeccc----
Q 018675          193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS-CSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYH----  267 (352)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----  267 (352)
                      ...  ........+. .  .....+..++|+|+|++++. +..++.+++|+++...       ........+....    
T Consensus       170 ~~~--g~~~~~~~~~-~--~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-------g~~~~~~~~~~~~~~~~  237 (347)
T 3hfq_A          170 SDA--GQLSEQSVLT-M--EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT-------GAFTQLGIVKTIPADYT  237 (347)
T ss_dssp             CTT--SCEEEEEEEE-C--CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT-------TEEEEEEEEESSCTTCC
T ss_pred             CCC--CcEEEeeeEE-c--CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC-------CceEEeeeeeecCCCCC
Confidence            621  1111111111 1  12245778999999996655 5678899999875310       0011111111111    


Q ss_pred             -CcceEEEEecCCc-eE-EecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEE
Q 018675          268 -DRTIFSVHWSREG-II-ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK  344 (352)
Q Consensus       268 -~~~i~~~~~~~~~-~~-~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~  344 (352)
                       ...+..+++++++ ++ ++...++.+.+|+.....      ....+.....+...+..++|+|+++.++++...++.|.
T Consensus       238 ~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g------~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  311 (347)
T 3hfq_A          238 AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG------HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNAT  311 (347)
T ss_dssp             SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG------CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC------cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence             1347788999987 34 566678999999764211      01222333445567899999999987666666679999


Q ss_pred             EEeec
Q 018675          345 IWELA  349 (352)
Q Consensus       345 iw~~~  349 (352)
                      +|++.
T Consensus       312 v~~~d  316 (347)
T 3hfq_A          312 LYARD  316 (347)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99663

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=2.5e-21  Score=175.91  Aligned_cols=210  Identities=13%  Similarity=0.103  Sum_probs=151.3

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCC----------ceeeeeeeeeecceecceEEEEECCCCCEE
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSAS----------SRFWNCKAVLEEMHTRTVRSCAWSPSGKLL   89 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~----------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l   89 (352)
                      ....++.++++|.      ..++++++.|+ +++|+....          .............+...|++++|+|+|++|
T Consensus        35 ~~~~~n~lavs~~------~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l  107 (434)
T 2oit_A           35 PKERSSLLAVSNK------YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTL  107 (434)
T ss_dssp             CCSCCBCEEEETT------TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEE
T ss_pred             CCCCccEEEEecC------CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEE
Confidence            4456888999986      35788888888 888864311          000110111111245679999999999999


Q ss_pred             E----EEeCCCcEEEEEccCC-----c----eeeeEeeccccCCeeEEEECCC-CcEEEEeeCCCcEEEEecCCCCeeEE
Q 018675           90 A----TASFDATTCIWEDVGG-----D----YECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFEC  155 (352)
Q Consensus        90 ~----s~~~d~~i~i~~~~~~-----~----~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~  155 (352)
                      +    +|+.|++|++||..+.     .    ......+.+|...|++++|+|+ +.+|++++.|++|++||++..   ..
T Consensus       108 av~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~---~~  184 (434)
T 2oit_A          108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET---VK  184 (434)
T ss_dssp             EEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS---EE
T ss_pred             EEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC---cc
Confidence            9    7889999999997542     1    1124456789999999999997 789999999999999999765   23


Q ss_pred             EEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeecc---CCCCcccEEEEEEcCCCCEEEEE
Q 018675          156 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES---NNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       156 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                      .....+|...+.+++|+|++.+|++|+.|+.|++|+....      ....+...   ...|...|.+++|++++.++++.
T Consensus       185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~------~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~  258 (434)
T 2oit_A          185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQ------EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY  258 (434)
T ss_dssp             EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCC------EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred             eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCc------ccccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence            3445678889999999999999999999999999976521      11122111   11345589999999998887653


Q ss_pred             -eCCC------cEEEEcCCc
Q 018675          233 -SDDL------TIKIWGADI  245 (352)
Q Consensus       233 -~~dg------~i~iwd~~~  245 (352)
                       ..||      .+++|+++.
T Consensus       259 ~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          259 AAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             EETTCCSSSCCEEEEEECCC
T ss_pred             ccCCCccCCCCceEEEEecc
Confidence             3443      389999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=1.7e-21  Score=189.11  Aligned_cols=287  Identities=10%  Similarity=0.126  Sum_probs=194.6

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeC-CC-----eEEEEecCCCceeeeeeeeeeccee--------------------
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSG-DK-----TVRIWEQSASSRFWNCKAVLEEMHT--------------------   74 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~-D~-----~v~~w~~~~~~~~~~~~~~~~~~h~--------------------   74 (352)
                      ...|++++|+|+      ++.|++++. |+     +|.+|+..+++......   ...+.                    
T Consensus        36 ~~~~~~~~~Spd------G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  106 (741)
T 2ecf_A           36 GPTLMKPKVAPD------GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVD---SKVVLPGTETLSDEEKARRERQRIA  106 (741)
T ss_dssp             CCCCEEEEECTT------SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEEC---GGGTC--------------------
T ss_pred             CCCCCCceEecC------CCEEEEEeccCCCCcccEEEEEECCCCceeEccc---hhhcccccccccchhhhhhhhhhhc
Confidence            457899999997      578999998 88     99999998764321110   00111                    


Q ss_pred             --cceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe
Q 018675           75 --RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE  152 (352)
Q Consensus        75 --~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~  152 (352)
                        ..|.+++|||||+.|++++. +.|.+|+..++.......+..|...+..++|+|+|++|+.++. +.|.+||+..+..
T Consensus       107 ~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~  184 (741)
T 2ecf_A          107 AMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQ  184 (741)
T ss_dssp             CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEE
T ss_pred             cccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCE
Confidence              23788999999999999886 8999999876510012345567788999999999999998875 5899999865432


Q ss_pred             eEEEEEeecCccC----------------eeEEEEcCCCCEEEEEeCCC-------------------------------
Q 018675          153 FECVSVLQGHAQD----------------VKMVQWHPTMDVLFSCSYDN-------------------------------  185 (352)
Q Consensus       153 ~~~~~~~~~h~~~----------------v~~~~~~~~~~~l~s~~~d~-------------------------------  185 (352)
                         ......+...                +..+.|+|+++.|++++.|+                               
T Consensus       185 ---~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          185 ---MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             ---EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             ---EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence               2222222221                46789999999999887765                               


Q ss_pred             --cEEEEecCC-CCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC-----CCcEEEEcCCccccccCCCCccc
Q 018675          186 --TIKVWWAED-TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-----DLTIKIWGADITRMQSGDGYASW  257 (352)
Q Consensus       186 --~i~iw~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~  257 (352)
                        .|.+|++.. ...      ..+. ....|...+.+++| |||++|+.++.     +..|.+||+.....         
T Consensus       262 ~~~l~~~d~~~~~~~------~~~~-~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~---------  324 (741)
T 2ecf_A          262 QVKLGVISPAEQAQT------QWID-LGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ---------  324 (741)
T ss_dssp             EEEEEEECSSTTCCC------EEEC-CCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE---------
T ss_pred             eeEEEEEECCCCCce------EEec-CCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce---------
Confidence              677776543 221      1111 11246788999999 99999987653     56799998753221         


Q ss_pred             eeeEEeecccCc---ceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEE-EecCCCcc
Q 018675          258 RHLCTISGYHDR---TIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV-QWSPGERR  332 (352)
Q Consensus       258 ~~~~~~~~~~~~---~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~-~~sp~~~~  332 (352)
                      ..  .+......   .+..+.|++++ ++++++.++...+|.....    +.     ......|...|..+ +|+|+++.
T Consensus       325 ~~--~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~----~~-----~~~l~~~~~~v~~~~~~s~dg~~  393 (741)
T 2ecf_A          325 RV--LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK----GK-----AAALTHGNWSVDELLAVDEKAGL  393 (741)
T ss_dssp             EE--EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS----SC-----EEESCCSSSCEEEEEEEETTTTE
T ss_pred             EE--EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC----CC-----eeeeeecceEEEeEeEEeCCCCE
Confidence            11  11111111   23456788876 6777788888888855321    11     22345667778887 59999987


Q ss_pred             eEEEecCCC--eEEEEeec
Q 018675          333 LLASASDDG--MIKIWELA  349 (352)
Q Consensus       333 ~l~s~~~Dg--~i~iw~~~  349 (352)
                      ++++++.|+  .++||++.
T Consensus       394 l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          394 AYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             EEEEECSSCTTCBEEEEEE
T ss_pred             EEEEEeCCCCceEEEEEEE
Confidence            777787777  89999985

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=3.1e-21  Score=165.40  Aligned_cols=259  Identities=14%  Similarity=0.094  Sum_probs=172.7

Q ss_pred             EeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccC-CceeeeEeeccc-cCCe
Q 018675           44 SCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG-GDYECVATLEGH-ENEV  121 (352)
Q Consensus        44 s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~-~~~~~~~~~~~h-~~~v  121 (352)
                      +++.|++|++|+..++...    ..  ..|...|.+++|+|+|++|++++ ++.+.+|+..+ ++.  ......+ ...+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~----~~--~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~--~~~~~~~~~~~~   87 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR----VV--WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP--EKVDTGFATICN   87 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE----EE--EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC--EECCCTTCCCBC
T ss_pred             CCCcceeEEEEeCCCCcee----ee--ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc--eEeccccccccc
Confidence            4568999999999876421    11  23678899999999999999886 78999999877 543  2333344 4678


Q ss_pred             eEEEECCCCcEEEEee--CCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE-EEeCCCcEEEEecCCCCCC
Q 018675          122 KSVSWNASGTLLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDSD  198 (352)
Q Consensus       122 ~~v~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~iw~~~~~~~~  198 (352)
                      .+++|+|++++|++++  .++...+|.+......  ...+..+ ..+..++|+|+++.++ +++.++.+++|++..... 
T Consensus        88 ~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-  163 (297)
T 2ojh_A           88 NDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT--PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-  163 (297)
T ss_dssp             SCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC--CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-
T ss_pred             cceEECCCCCEEEEEEeCCCCcceEEEEECCCCc--eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCC-
Confidence            9999999999999998  4455666655322111  2223333 3488899999999776 788899999997643211 


Q ss_pred             CceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEec
Q 018675          199 NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS  277 (352)
Q Consensus       199 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  277 (352)
                      .   ...+    ..+...+.++.|+|++++|+.++ .++.+++|+++....          ....+. .+...+..+.|+
T Consensus       164 ~---~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~----------~~~~~~-~~~~~~~~~~~s  225 (297)
T 2ojh_A          164 V---ETRL----THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS----------SVERIT-DSAYGDWFPHPS  225 (297)
T ss_dssp             C---EEEC----CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS----------CEEECC-CCSEEEEEEEEC
T ss_pred             c---ceEc----ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC----------CcEEEe-cCCcccCCeEEC
Confidence            1   1112    24567899999999999888666 589999998653210          111111 234457788999


Q ss_pred             CCc-eEEecCCC-----------CeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCC
Q 018675          278 REG-IIASGAAD-----------DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD  340 (352)
Q Consensus       278 ~~~-~~~s~~~d-----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~D  340 (352)
                      +++ +++.++.+           +.+.+|+......       ..+....+|...+..++|+|+++.+++++..+
T Consensus       226 ~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          226 PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-------ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-------EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-------eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            876 56655554           4577776543211       11223346788899999999998655444443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=1.2e-20  Score=175.97  Aligned_cols=280  Identities=11%  Similarity=0.073  Sum_probs=189.5

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEc--cCCceeeeEeecc
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWED--VGGDYECVATLEG  116 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~--~~~~~~~~~~~~~  116 (352)
                      +.++++++.|++|.+||..+++...    .+...+  .+..++|+|||++|++++.|++|.+||.  .++  .++..+. 
T Consensus       149 ~~~~vs~~~d~~V~v~D~~t~~~~~----~i~~g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--~~~~~i~-  219 (543)
T 1nir_A          149 NLFSVTLRDAGQIALVDGDSKKIVK----VIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEP--TKVAEIK-  219 (543)
T ss_dssp             GEEEEEEGGGTEEEEEETTTCCEEE----EEECST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--EEEEEEE-
T ss_pred             CEEEEEEcCCCeEEEEECCCceEEE----EEecCc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCC--cEEEEEe-
Confidence            5789999999999999998765322    222122  3789999999999999999999999998  554  4455665 


Q ss_pred             ccCCeeEEEECC----CCcEEEEee-CCCcEEEEecCCCCeeEEEEEeec-------Cc-cCeeEEEEcCCCCE-EEEEe
Q 018675          117 HENEVKSVSWNA----SGTLLATCG-RDKSVWIWEVMPGNEFECVSVLQG-------HA-QDVKMVQWHPTMDV-LFSCS  182 (352)
Q Consensus       117 h~~~v~~v~~~~----~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~-------h~-~~v~~~~~~~~~~~-l~s~~  182 (352)
                      +...+..++|+|    +|+++++++ .+++|.+||....+....+.....       |. ..+..+.++|++.. +++..
T Consensus       220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence            345689999999    999998887 489999999876554333221100       22 26788999997664 56677


Q ss_pred             CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEcCCccccccCCCCccceeeE
Q 018675          183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADITRMQSGDGYASWRHLC  261 (352)
Q Consensus       183 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  261 (352)
                      .++.|.+|+......  . ...++     .+...+..+.|+|+|++++++ ..+++|++||.+..+..           .
T Consensus       300 ~~g~i~vvd~~~~~~--l-~~~~i-----~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~-----------~  360 (543)
T 1nir_A          300 ETGKVLLVNYKDIDN--L-TVTSI-----GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS-----------A  360 (543)
T ss_dssp             TTTEEEEEECTTSSS--C-EEEEE-----ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE-----------E
T ss_pred             CCCeEEEEEecCCCc--c-eeEEe-----ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE-----------E
Confidence            889999998765321  1 11222     134557789999999987655 46899999998643221           1


Q ss_pred             Eeec---ccCcceEEEEecCC-c-eEEecC-CCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEE
Q 018675          262 TISG---YHDRTIFSVHWSRE-G-IIASGA-ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA  335 (352)
Q Consensus       262 ~~~~---~~~~~i~~~~~~~~-~-~~~s~~-~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~  335 (352)
                      .+..   .|......+. +++ + .++++. .|++|.+|+.....-.  .....++++..+|...+..++|+|++++++ 
T Consensus       361 ~i~~g~~ph~g~g~~~~-~p~~g~~~~s~~~~d~~V~v~d~~~~~~~--~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~-  436 (543)
T 1nir_A          361 LVDVGKTPHPGRGANFV-HPKYGPVWSTSHLGDGSISLIGTDPKNHP--QYAWKKVAELQGQGGGSLFIKTHPKSSHLY-  436 (543)
T ss_dssp             EEECSSSBCCTTCEEEE-ETTTEEEEEEEBSSSSEEEEEECCTTTCT--TTBTSEEEEEECSCSCCCCEECCTTCCEEE-
T ss_pred             eeccCCCCCCCCCcccC-CCCCccEEEeccCCCceEEEEEeCCCCCc--hhcCeEEEEEEcCCCCceEEEcCCCCCcEE-
Confidence            1111   1222222232 343 4 456654 6899999976531110  011234566678888889999999998654 


Q ss_pred             Eec-------CCCeEEEEeecc
Q 018675          336 SAS-------DDGMIKIWELAN  350 (352)
Q Consensus       336 s~~-------~Dg~i~iw~~~~  350 (352)
                      +++       .+++|.|||+.+
T Consensus       437 v~~~~~~~~~~~~~v~v~d~~~  458 (543)
T 1nir_A          437 VDTTFNPDARISQSVAVFDLKN  458 (543)
T ss_dssp             ECCTTCSSHHHHTCEEEEETTC
T ss_pred             EecCCCCCcccCceEEEEECCC
Confidence            554       278999999874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=6.2e-21  Score=184.59  Aligned_cols=291  Identities=11%  Similarity=0.103  Sum_probs=181.9

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceec---ceEEEEECCCCCEEEEEeCC----
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR---TVRSCAWSPSGKLLATASFD----   95 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~d----   95 (352)
                      .+.+++|+|+      ++++++ +.|++|++|+..+++..    ..+ ..|..   .|.+++|||||++|++++.+    
T Consensus        18 ~~~~~~~spd------g~~~~~-~~dg~i~~~d~~~g~~~----~~~-~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~   85 (723)
T 1xfd_A           18 HDPEAKWISD------TEFIYR-EQKGTVRLWNVETNTST----VLI-EGKKIESLRAIRYEISPDREYALFSYNVEPIY   85 (723)
T ss_dssp             CCCCCCBSSS------SCBCCC-CSSSCEEEBCGGGCCCE----EEE-CTTTTTTTTCSEEEECTTSSEEEEEESCCCCS
T ss_pred             cccccEEcCC------CcEEEE-eCCCCEEEEECCCCcEE----EEe-ccccccccccceEEECCCCCEEEEEecCccce
Confidence            4678899997      456665 78999999999876431    122 22332   48999999999999999875    


Q ss_pred             -----CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccC-----
Q 018675           96 -----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD-----  165 (352)
Q Consensus        96 -----~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~-----  165 (352)
                           +.+.+||..+++...+....+|...+..++|+|+|+.|+.++. +.|++||+..+...   .....+...     
T Consensus        86 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~---~~~~~~~~~~~~~g  161 (723)
T 1xfd_A           86 QHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAI---RVVSTGKEGVIYNG  161 (723)
T ss_dssp             SSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCE---EEECCCBTTTEEEE
T ss_pred             eecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceE---EEecCCCCCceECc
Confidence                 6788999887754333333455556899999999999998886 78999998765432   222333322     


Q ss_pred             -------------eeEEEEcCCCCEEEEEeCCC----------------------------------cEEEEecCCCCCC
Q 018675          166 -------------VKMVQWHPTMDVLFSCSYDN----------------------------------TIKVWWAEDTDSD  198 (352)
Q Consensus       166 -------------v~~~~~~~~~~~l~s~~~d~----------------------------------~i~iw~~~~~~~~  198 (352)
                                   +..+.|+|+++.|++++.|+                                  .|.+|++..... 
T Consensus       162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-  240 (723)
T 1xfd_A          162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-  240 (723)
T ss_dssp             ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-
T ss_pred             ccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-
Confidence                         27899999999999887653                                  677777654321 


Q ss_pred             CceeEeeeec--cCCCCcccEEEEEEcCCCCEEEEEeC----CCcEEEEcCCccccccCCCCccceeeEEeecccCcce-
Q 018675          199 NWHCVQTISE--SNNGHSSTIWALSFNAKGDKLVSCSD----DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI-  271 (352)
Q Consensus       199 ~~~~~~~~~~--~~~~h~~~i~~l~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-  271 (352)
                          ...+..  ....+...+.+++|+|||+++++.+.    +..|.+||+...+..         .  .+...+...+ 
T Consensus       241 ----~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~---------~--~~~~~~~~~~~  305 (723)
T 1xfd_A          241 ----DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT---------K--KHEDESEAWLH  305 (723)
T ss_dssp             ----CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE---------E--EEEEECSSCCC
T ss_pred             ----eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce---------E--EEEeccCCEEe
Confidence                111110  01123567899999999998877653    357899987532210         1  1111111111 


Q ss_pred             ---EEEEecCCce-EE-e-cCCCC----eEEEEEccCCccccCcccceeeecccccCcceeE-EEecCCCcceEEEecCC
Q 018675          272 ---FSVHWSREGI-IA-S-GAADD----SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS-VQWSPGERRLLASASDD  340 (352)
Q Consensus       272 ---~~~~~~~~~~-~~-s-~~~d~----~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~sp~~~~~l~s~~~D  340 (352)
                         ..+.|+|++. ++ . ...++    ...+|...   ....... ........+...+.. ++|+|+++.++.++..+
T Consensus       306 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d---~~~~~~~-~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~  381 (723)
T 1xfd_A          306 RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS---SQPNSSN-DNIQSITSGDWDVTKILAYDEKGNKIYFLSTED  381 (723)
T ss_dssp             CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC---SSCCSSS-CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred             ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe---ccCCCCc-cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC
Confidence               2567888773 33 2 45566    44444322   0000000 001112223344554 69999998765566666


Q ss_pred             --CeEEEEeec
Q 018675          341 --GMIKIWELA  349 (352)
Q Consensus       341 --g~i~iw~~~  349 (352)
                        +.++||++.
T Consensus       382 ~~~~~~l~~~~  392 (723)
T 1xfd_A          382 LPRRRQLYSAN  392 (723)
T ss_dssp             CTTCCEEEEEC
T ss_pred             CCcceEEEEEe
Confidence              889999985

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=1.3e-18  Score=152.54  Aligned_cols=258  Identities=10%  Similarity=0.147  Sum_probs=167.0

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCC-CeEEEEecC--CCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC-
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGD-KTVRIWEQS--ASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF-   94 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D-~~v~~w~~~--~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-   94 (352)
                      .|...+.+++|+|+      ++++++++.+ +.+++|++.  ++..  .....+.  ....+..++|+|+|+.|++++. 
T Consensus        35 ~~~~~~~~~~~spd------g~~l~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~  104 (343)
T 1ri6_A           35 DVPGQVQPMVVSPD------KRYLYVGVRPEFRVLAYRIAPDDGAL--TFAAESA--LPGSLTHISTDHQGQFVFVGSYN  104 (343)
T ss_dssp             ECSSCCCCEEECTT------SSEEEEEETTTTEEEEEEECTTTCCE--EEEEEEE--CSSCCSEEEECTTSSEEEEEETT
T ss_pred             ecCCCCceEEECCC------CCEEEEeecCCCeEEEEEecCCCCce--eeccccc--cCCCCcEEEEcCCCCEEEEEecC
Confidence            47778999999997      4677777776 999999987  3321  1111111  1237889999999998876665 


Q ss_pred             CCcEEEEEccCCc-eeeeEeeccccCCeeEEEECCCCcEEEEee-CCCcEEEEecCCCCeeEEEE--Eeec-CccCeeEE
Q 018675           95 DATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGNEFECVS--VLQG-HAQDVKMV  169 (352)
Q Consensus        95 d~~i~i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~--~~~~-h~~~v~~~  169 (352)
                      ++.+.+|+...+. ......+.. ...+.+++|+|+++++++++ .++.|.+||+..........  .... ....+..+
T Consensus       105 ~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (343)
T 1ri6_A          105 AGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM  183 (343)
T ss_dssp             TTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred             CCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceE
Confidence            7889999974322 223333333 34688999999999888777 89999999997623222222  2222 23467889


Q ss_pred             EEcCCCCEEEEEe-CCCcEEEEecCCCCCCCceeEeeeeccCCC--CcccEEEEEEcCCCCEEE-EEeCCCcEEEEcCCc
Q 018675          170 QWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNG--HSSTIWALSFNAKGDKLV-SCSDDLTIKIWGADI  245 (352)
Q Consensus       170 ~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~l~~~~~~~~l~-s~~~dg~i~iwd~~~  245 (352)
                      +|+|+++++++++ .++.+.+|++.... ..............+  ....+..++|+|++++|+ ++..++.|++|+++.
T Consensus       184 ~~~pdg~~l~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          184 VFHPNEQYAYCVNELNSSVDVWELKDPH-GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEESSCTT-SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCC-CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence            9999999776554 78999999875321 122222222211112  134677899999998877 555799999998752


Q ss_pred             cccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecC-CCCeEEEEEcc
Q 018675          246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGA-ADDSVQFFVES  297 (352)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~-~d~~v~~~~~~  297 (352)
                      ..       ........+.. . ..+..+++++++ ++++++ .++.+.+|...
T Consensus       263 ~~-------~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          263 DG-------SVLSKEGFQPT-E-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             TS-------CCEEEEEEEEC-S-SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CC-------CceEEeeeecC-C-CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            10       01122222221 2 236778899876 455544 68999999543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=2.4e-20  Score=169.49  Aligned_cols=207  Identities=15%  Similarity=0.130  Sum_probs=144.7

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEccCC-----------cee---eeEeeccccCCeeEEEECCCCcEEE----Ee
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDVGG-----------DYE---CVATLEGHENEVKSVSWNASGTLLA----TC  136 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~-----------~~~---~~~~~~~h~~~v~~v~~~~~~~~l~----s~  136 (352)
                      ..++.+++++++.++++++.|+ +++|+....           ...   .... ..+...|++++|+|++++|+    ++
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcCCCCEEEEEEecc
Confidence            4578899999999999999887 888764210           000   0011 13566799999999999999    88


Q ss_pred             eCCCcEEEEecCCC--------CeeEEEEEeecCccCeeEEEEcCC-CCEEEEEeCCCcEEEEecCCCCCCCceeEeeee
Q 018675          137 GRDKSVWIWEVMPG--------NEFECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS  207 (352)
Q Consensus       137 ~~d~~v~vwd~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~  207 (352)
                      +.|++|++||+...        +....+..+.+|...|.+++|+|+ +.+|++++.|+.|++||+...     ...... 
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-----~~~~~~-  188 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-----VKVCAT-  188 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-----EEEEEE-
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-----cceeec-
Confidence            99999999998543        222335566789999999999998 789999999999999987653     112111 


Q ss_pred             ccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEe--c
Q 018675          208 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIAS--G  285 (352)
Q Consensus       208 ~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s--~  285 (352)
                         .+|...|.+++|+|+|++|++|+.||+|++||.+...........      .....|...+.++.|++++.++.  .
T Consensus       189 ---~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~------~~~~~~~~~v~~v~w~~~~~~l~~~~  259 (434)
T 2oit_A          189 ---LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP------FYESDHPVRVLDVLWIGTYVFAIVYA  259 (434)
T ss_dssp             ---ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCT------TCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred             ---cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCc------ccCCCCceeEEEEEEecCceEEEEEc
Confidence               257889999999999999999999999999997621110000000      00011223688899998875442  2


Q ss_pred             CCCC------eEEEEEccC
Q 018675          286 AADD------SVQFFVESK  298 (352)
Q Consensus       286 ~~d~------~v~~~~~~~  298 (352)
                      ..+|      .+++|+...
T Consensus       260 ~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          260 AADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             ETTCCSSSCCEEEEEECCC
T ss_pred             cCCCccCCCCceEEEEecc
Confidence            2232      377887654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=1.2e-19  Score=175.10  Aligned_cols=284  Identities=13%  Similarity=0.137  Sum_probs=183.2

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEE
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW  101 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~  101 (352)
                      ..|.+++|+|+ .     .++++  .|+++++|++.++..    ...  ..+...+.+++|+|||+.|+++ .|+.|.+|
T Consensus        82 ~~v~~~~~spd-~-----~~~~~--~~~~i~~~d~~~~~~----~~l--~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~  146 (706)
T 2z3z_A           82 FPSFRTLDAGR-G-----LVVLF--TQGGLVGFDMLARKV----TYL--FDTNEETASLDFSPVGDRVAYV-RNHNLYIA  146 (706)
T ss_dssp             CCCEEEEETTT-T-----EEEEE--ETTEEEEEETTTTEE----EEE--ECCTTCCTTCEECTTSSEEEEE-ETTEEEEE
T ss_pred             cCceeEEECCC-C-----eEEEE--ECCEEEEEECCCCce----EEc--cCCcccccCCcCCCCCCEEEEE-ECCeEEEE
Confidence            56999999997 2     34444  469999999977532    111  1245668889999999999985 68999999


Q ss_pred             EccC-----CceeeeEeeccccCC--------------eeEEEECCCCcEEEEee-------------------------
Q 018675          102 EDVG-----GDYECVATLEGHENE--------------VKSVSWNASGTLLATCG-------------------------  137 (352)
Q Consensus       102 ~~~~-----~~~~~~~~~~~h~~~--------------v~~v~~~~~~~~l~s~~-------------------------  137 (352)
                      +..+     ++..  .....+...              +.++.|+|+|++|++++                         
T Consensus       147 ~~~~~~~~~g~~~--~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~  224 (706)
T 2z3z_A          147 RGGKLGEGMSRAI--AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLY  224 (706)
T ss_dssp             ECBCTTSCCCCCE--ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEEC
T ss_pred             ecCcccccCCCcE--EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEee
Confidence            9876     5432  222222222              58999999999999887                         


Q ss_pred             --------CCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCC-----cEEEEecCCCCCCCceeEe
Q 018675          138 --------RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN-----TIKVWWAEDTDSDNWHCVQ  204 (352)
Q Consensus       138 --------~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~i~iw~~~~~~~~~~~~~~  204 (352)
                              .+..|.+||+..+.. ..+.....|...+..++|+|+++.+++++.++     .|.+|+.....     ...
T Consensus       225 y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-----~~~  298 (706)
T 2z3z_A          225 YPMAGTPSHHVTVGIYHLATGKT-VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-----FVR  298 (706)
T ss_dssp             CCBTTSCCCEEEEEEEETTTTEE-EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-----EEE
T ss_pred             CCCCCCCCCeeEEEEEECCCCce-EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-----eee
Confidence                    457899999865432 11111124556789999999999999888776     89999875431     111


Q ss_pred             eee-ccCCCCcccEEEEEEcC--CCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEE-EEecCCc
Q 018675          205 TIS-ESNNGHSSTIWALSFNA--KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFS-VHWSREG  280 (352)
Q Consensus       205 ~~~-~~~~~h~~~i~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~  280 (352)
                      .+. .........+.++.|+|  +|+++++++.||.+++|.++...          .....+. .+...+.. +.|++++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~----------~~~~~l~-~~~~~v~~~~~~spdg  367 (706)
T 2z3z_A          299 TLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG----------RLIRQVT-KGEWEVTNFAGFDPKG  367 (706)
T ss_dssp             EEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS----------CEEEECC-CSSSCEEEEEEECTTS
T ss_pred             EEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC----------CEEEecC-CCCeEEEeeeEEcCCC
Confidence            111 11111112345689999  99999999999999999764210          1111121 12334554 6888876


Q ss_pred             -e-EEecCCCC----eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCC---CeEEEEeecc
Q 018675          281 -I-IASGAADD----SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD---GMIKIWELAN  350 (352)
Q Consensus       281 -~-~~s~~~d~----~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~D---g~i~iw~~~~  350 (352)
                       . ++++..++    .+..|+.....         . . ...|...+.+++|||+++.++++++.+   +.|.+|++..
T Consensus       368 ~~l~~~~~~~~~~~~~l~~~d~~~~~---------~-~-~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          368 TRLYFESTEASPLERHFYCIDIKGGK---------T-K-DLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             SEEEEEESSSCTTCBEEEEEETTCCC---------C-E-ESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             CEEEEEecCCCCceEEEEEEEcCCCC---------c-e-eccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence             3 44455444    34444332211         1 1 123566799999999998665555544   5699999764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=5.7e-18  Score=150.11  Aligned_cols=281  Identities=14%  Similarity=0.131  Sum_probs=173.9

Q ss_pred             eCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC----CcEEEEEccC--CceeeeEeeccccC
Q 018675           46 SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD----ATTCIWEDVG--GDYECVATLEGHEN  119 (352)
Q Consensus        46 s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----~~i~i~~~~~--~~~~~~~~~~~h~~  119 (352)
                      +.++.+.+|.++............   +...+..++|+|+|++|++++.+    +.+.+|+...  +....+.....+..
T Consensus        24 ~~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~  100 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA  100 (361)
T ss_dssp             SSCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred             CCCCCEEEEEEeCCCCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC
Confidence            356789999775432211211111   55677889999999999998886    7999998654  44444555544556


Q ss_pred             CeeEEEECCCCcEEEEee-CCCcEEEEecCCCCeeEEE-E--Eeec--------CccCeeEEEEcCCCCEEEEEe-CCCc
Q 018675          120 EVKSVSWNASGTLLATCG-RDKSVWIWEVMPGNEFECV-S--VLQG--------HAQDVKMVQWHPTMDVLFSCS-YDNT  186 (352)
Q Consensus       120 ~v~~v~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~-~--~~~~--------h~~~v~~~~~~~~~~~l~s~~-~d~~  186 (352)
                      .+..+++  ++++|++++ .++++.+|++......... .  ...+        +...+.+++|+|+++++++++ .++.
T Consensus       101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  178 (361)
T 3scy_A          101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQ  178 (361)
T ss_dssp             CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCE
Confidence            6778887  777766666 6789999998643322111 1  1111        112346799999999766555 4789


Q ss_pred             EEEEecCCCCC----CCceeE---eeeeccCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEcCCccccccCCCCccce
Q 018675          187 IKVWWAEDTDS----DNWHCV---QTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQSGDGYASWR  258 (352)
Q Consensus       187 i~iw~~~~~~~----~~~~~~---~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~  258 (352)
                      +.+|++.....    ......   ....   ..+...+..++|+|+|+++++++ .++.|.+|+++...+         .
T Consensus       179 v~v~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~---------~  246 (361)
T 3scy_A          179 IHKFNINPNANADNKEKFLTKGTPEAFK---VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML---------D  246 (361)
T ss_dssp             EEEEEECTTCCTTTCCCCEEEEEEEEEE---CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE---------E
T ss_pred             EEEEEEcCCCCcccccceeeccccccee---cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce---------E
Confidence            99998754321    001110   1111   12345678899999999887766 689999998752211         1


Q ss_pred             eeEEee--cccCcceEEEEecCCc-eE-EecCC-CCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcce
Q 018675          259 HLCTIS--GYHDRTIFSVHWSREG-II-ASGAA-DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRL  333 (352)
Q Consensus       259 ~~~~~~--~~~~~~i~~~~~~~~~-~~-~s~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~  333 (352)
                      ....+.  ..+......+.+++++ ++ ++... ++.+.+|......   . .. ..+..... ...+.+++|+|+++.+
T Consensus       247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~---g-~~-~~~~~~~~-g~~~~~~~~spdg~~l  320 (361)
T 3scy_A          247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN---G-TL-TKVGYQLT-GIHPRNFIITPNGKYL  320 (361)
T ss_dssp             EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT---C-CE-EEEEEEEC-SSCCCEEEECTTSCEE
T ss_pred             EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC---C-cE-EEeeEecC-CCCCceEEECCCCCEE
Confidence            111111  1122345788999987 44 34444 5889999764210   0 00 11111222 4568899999999877


Q ss_pred             EEEecCCCeEEEEeec
Q 018675          334 LASASDDGMIKIWELA  349 (352)
Q Consensus       334 l~s~~~Dg~i~iw~~~  349 (352)
                      +++...++.|.+|++.
T Consensus       321 ~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          321 LVACRDTNVIQIFERD  336 (361)
T ss_dssp             EEEETTTTEEEEEEEC
T ss_pred             EEEECCCCCEEEEEEE
Confidence            7666688999998764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=8.4e-18  Score=148.12  Aligned_cols=274  Identities=8%  Similarity=0.088  Sum_probs=182.2

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeC-------CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE-E
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSG-------DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA-T   91 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~-------D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s   91 (352)
                      ....+.+++|+|+      ++.++.++.       +++|.+||..+.+......      ....+..++|+|+|+.++ +
T Consensus        39 ~~~~~~~~~~s~d------g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~v~  106 (353)
T 3vgz_A           39 VGKGAYEMAYSQQ------ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH------NDLKPFGATINNTTQTLWFG  106 (353)
T ss_dssp             EESSEEEEEEETT------TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE------ESSCCCSEEEETTTTEEEEE
T ss_pred             hccCccceEECCC------CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe------cCCCcceEEECCCCCEEEEE
Confidence            3456788999997      345666553       6789999998765432211      234567889999998554 5


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccC---------CeeEEEECCCCcEEEEee--CCCcEEEEecCCCCeeEEEEEee
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHEN---------EVKSVSWNASGTLLATCG--RDKSVWIWEVMPGNEFECVSVLQ  160 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~---------~v~~v~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~  160 (352)
                      ...++.+.+||..+++.  ...+..+..         .+.++.|+|++++++.++  .++.|.+||+..++   .+..+.
T Consensus       107 ~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~---~~~~~~  181 (353)
T 3vgz_A          107 NTVNSAVTAIDAKTGEV--KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK---LKTAIQ  181 (353)
T ss_dssp             ETTTTEEEEEETTTCCE--EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE---EEEEEC
T ss_pred             ecCCCEEEEEeCCCCee--EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc---eEEEec
Confidence            55579999999877653  333333221         268899999999777665  47889999986543   334444


Q ss_pred             cCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe-CCCcEE
Q 018675          161 GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIK  239 (352)
Q Consensus       161 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~-~dg~i~  239 (352)
                      .+...+..+.|+|+++.+++++.++.+.+|+....     .....+.....++...+..++|+|++++++.++ .++.|.
T Consensus       182 ~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~  256 (353)
T 3vgz_A          182 NTGKMSTGLALDSEGKRLYTTNADGELITIDTADN-----KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVL  256 (353)
T ss_dssp             CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT-----EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEE
T ss_pred             CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC-----eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEE
Confidence            34455788899999999999999999999986542     223333222234556788999999999776655 459999


Q ss_pred             EEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCCccccCcccceeeeccccc
Q 018675          240 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH  317 (352)
Q Consensus       240 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h  317 (352)
                      +||....+.           ...+....   ...+.+++++  .+++...++.+.+|+.....         ++.... .
T Consensus       257 ~~d~~~~~~-----------~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~---------~~~~~~-~  312 (353)
T 3vgz_A          257 VVDTRNGNI-----------LAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK---------VVKTFD-T  312 (353)
T ss_dssp             EEETTTCCE-----------EEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTE---------EEEEEE-C
T ss_pred             EEECCCCcE-----------EEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCe---------EEEEEe-c
Confidence            998753221           11111111   2346777765  45566678999999764321         111121 2


Q ss_pred             CcceeEEEecCCCcceEEEecC
Q 018675          318 DMDVNSVQWSPGERRLLASASD  339 (352)
Q Consensus       318 ~~~i~~~~~sp~~~~~l~s~~~  339 (352)
                      ...+.+++|+|+++.++++...
T Consensus       313 ~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          313 PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             CSEEEEEEECTTSCEEEEEEEC
T ss_pred             CCCCCeEEEcCCCCEEEEEEcc
Confidence            3468999999999877776654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=2.7e-19  Score=153.27  Aligned_cols=239  Identities=16%  Similarity=0.156  Sum_probs=161.5

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCC-CceeeeeeeeeecceecceEEEEECCCCCEEEEEe-
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSA-SSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS-   93 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~-~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-   93 (352)
                      .+..|...|.+++|+|+      +++|++++ ++.|.+|++.+ +..    .......+...+.+++|+|+|+.|++++ 
T Consensus        36 ~~~~~~~~v~~~~~spd------g~~l~~~~-~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~spdg~~l~~~~~  104 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPD------GKYLLLNS-EGLLYRLSLAGDPSP----EKVDTGFATICNNDHGISPDGALYAISDK  104 (297)
T ss_dssp             EEEEESSCCEEEEECTT------SSEEEEEE-TTEEEEEESSSCCSC----EECCCTTCCCBCSCCEECTTSSEEEEEEC
T ss_pred             eeccCCcceEeeEECCC------CCEEEEEc-CCeEEEEeCCCCCCc----eEeccccccccccceEECCCCCEEEEEEe
Confidence            45678999999999997      56888876 88999999987 532    1122122346788999999999999998 


Q ss_pred             -CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEE-EeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           94 -FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        94 -~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                       .++...||........ ...+.. ...+..++|+|+++.|+ +++.|+.+.+|++.....  ....+..+...+.++.|
T Consensus       105 ~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~  180 (297)
T 2ojh_A          105 VEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG--VETRLTHGEGRNDGPDY  180 (297)
T ss_dssp             TTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC--CEEECCCSSSCEEEEEE
T ss_pred             CCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCC--cceEcccCCCccccceE
Confidence             4456666654321111 223333 33588999999999876 788899999999643221  12345567778999999


Q ss_pred             cCCCCEEEEEe-CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC-----------CcEE
Q 018675          172 HPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD-----------LTIK  239 (352)
Q Consensus       172 ~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d-----------g~i~  239 (352)
                      +|+++.++.++ .++.+++|.+.....    ....+    ..|...+.++.|+|++++|+.++.+           +.|.
T Consensus       181 s~dg~~l~~~~~~~~~~~i~~~~~~~~----~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~  252 (297)
T 2ojh_A          181 SPDGRWIYFNSSRTGQMQIWRVRVDGS----SVERI----TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ  252 (297)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEETTSS----CEEEC----CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred             CCCCCEEEEEecCCCCccEEEECCCCC----CcEEE----ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence            99999877666 589999997642211    11222    2456788999999999999988765           5699


Q ss_pred             EEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCC
Q 018675          240 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAA  287 (352)
Q Consensus       240 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~  287 (352)
                      +||++..+.         ..+.... .+...+..+.|++++ .++.++.
T Consensus       253 ~~d~~~~~~---------~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          253 LMDMDGGNV---------ETLFDLF-GGQGTMNSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             EEETTSCSC---------EEEEEEE-ESTTTSCSCCBCTTSSEEEEEEE
T ss_pred             EEecCCCCc---------eeeeccC-CCCcccccceECCCCCEEEEEEe
Confidence            998753211         1122111 234556677788766 4544443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=8.8e-19  Score=169.98  Aligned_cols=283  Identities=10%  Similarity=0.101  Sum_probs=183.3

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCc--eeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS--RFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCI  100 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i  100 (352)
                      .|.+++|+|+      +++|++++. ++|.+|++.++.  ..   .. + ..|...+..++|||||+.|+.++ ++.|.+
T Consensus       110 ~v~~~~~SpD------g~~l~~~~~-~~i~~~d~~~~~~~~~---~~-l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~  176 (741)
T 2ecf_A          110 GIVDYQWSPD------AQRLLFPLG-GELYLYDLKQEGKAAV---RQ-L-THGEGFATDAKLSPKGGFVSFIR-GRNLWV  176 (741)
T ss_dssp             ESCCCEECTT------SSEEEEEET-TEEEEEESSSCSTTSC---CB-C-CCSSSCEEEEEECTTSSEEEEEE-TTEEEE
T ss_pred             CcceeEECCC------CCEEEEEeC-CcEEEEECCCCCcceE---EE-c-ccCCcccccccCCCCCCEEEEEe-CCcEEE
Confidence            4889999997      578888876 999999987651  11   11 1 23567899999999999999887 468999


Q ss_pred             EEccCCceeeeEeeccccCC----------------eeEEEECCCCcEEEEeeCCC------------------------
Q 018675          101 WEDVGGDYECVATLEGHENE----------------VKSVSWNASGTLLATCGRDK------------------------  140 (352)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~----------------v~~v~~~~~~~~l~s~~~d~------------------------  140 (352)
                      |+..+++..  .....+...                +..+.|+|+|++|++++.|+                        
T Consensus       177 ~d~~~g~~~--~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~  254 (741)
T 2ecf_A          177 IDLASGRQM--QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP  254 (741)
T ss_dssp             EETTTTEEE--ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred             EecCCCCEE--EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence            998766432  222222221                47899999999999988765                        


Q ss_pred             ---------cEEEEecCC-CCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-----CCcEEEEecCCCCCCCceeEee
Q 018675          141 ---------SVWIWEVMP-GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-----DNTIKVWWAEDTDSDNWHCVQT  205 (352)
Q Consensus       141 ---------~v~vwd~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----d~~i~iw~~~~~~~~~~~~~~~  205 (352)
                               .|.+||+.. +... .+.....|...+..++| |+++.|+.++.     +..|.+|+.....     ....
T Consensus       255 ~~g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-----~~~~  327 (741)
T 2ecf_A          255 AAGDANVQVKLGVISPAEQAQTQ-WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-----QRVL  327 (741)
T ss_dssp             BTTSCCCEEEEEEECSSTTCCCE-EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-----EEEE
T ss_pred             CCCCCCCeeEEEEEECCCCCceE-EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-----eEEE
Confidence                     788899865 5421 11111146677899999 99998887654     4578899875432     1112


Q ss_pred             eeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEE-EecCCc-e-E
Q 018675          206 ISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSV-HWSREG-I-I  282 (352)
Q Consensus       206 ~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~-~-~  282 (352)
                      +.....+....+.++.|+|+|+++++++.||.++||..+...          . ...+. .+...+..+ .|++++ . +
T Consensus       328 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~----------~-~~~l~-~~~~~v~~~~~~s~dg~~l~  395 (741)
T 2ecf_A          328 AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG----------K-AAALT-HGNWSVDELLAVDEKAGLAY  395 (741)
T ss_dssp             EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS----------C-EEESC-CSSSCEEEEEEEETTTTEEE
T ss_pred             EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC----------C-eeeee-ecceEEEeEeEEeCCCCEEE
Confidence            211111111134578999999999999999988888654210          0 11111 133445565 588876 3 4


Q ss_pred             EecCCCC--eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCC---CeEEEEee
Q 018675          283 ASGAADD--SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD---GMIKIWEL  348 (352)
Q Consensus       283 ~s~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~D---g~i~iw~~  348 (352)
                      ++++.++  .+++|......    ..    ...... ...+..++||||++.++++.+..   ..+.+|+.
T Consensus       396 ~~~~~~~~~~~~l~~~~~~g----~~----~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          396 FRAGIESARESQIYAVPLQG----GQ----PQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             EEECSSCTTCBEEEEEETTC----CC----CEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             EEEeCCCCceEEEEEEEcCC----CC----eeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence            4555555  78888654211    10    111222 45688999999998766665544   35777765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=3.4e-19  Score=179.06  Aligned_cols=279  Identities=10%  Similarity=0.062  Sum_probs=198.3

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF   94 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   94 (352)
                      ..+.+|...+.++.|+|+       .++++++.|++++||........   ...+ ..|. .+...+|+|||+.|+.+ .
T Consensus       197 ~~l~~~~~~v~~~~~s~d-------~l~~~~~~dg~~~l~~~~~~g~~---~~~l-~~~~-~~~~~~~SpDG~~la~~-~  263 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-------RIYFITDIDGFGQIYSTDLDGKD---LRKH-TSFT-DYYPRHLNTDGRRILFS-K  263 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-------EEEEEECTTSSCEEEEEETTSCS---CEEC-CCCC-SSCEEEEEESSSCEEEE-E
T ss_pred             EECcCCCCcccceEEeCC-------EEEEEEeccCceEEEEEeCCCCc---ceEe-cCCC-CcceeeEcCCCCEEEEE-e
Confidence            455789999999999985       46778888999999986532211   1111 1122 45677999999999887 4


Q ss_pred             CCcEEEEEccCCceeeeEeecc-----------ccCCeeEEEEC-CCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecC
Q 018675           95 DATTCIWEDVGGDYECVATLEG-----------HENEVKSVSWN-ASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH  162 (352)
Q Consensus        95 d~~i~i~~~~~~~~~~~~~~~~-----------h~~~v~~v~~~-~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h  162 (352)
                      ++.+.+|+.....   +..+.+           |...+.+++|+ |+|+.|++++ ++.+.+|++..+.    ...+..|
T Consensus       264 ~~~i~~~d~~~~~---l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~----~~~~~~~  335 (1045)
T 1k32_A          264 GGSIYIFNPDTEK---IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY----VLKVPEP  335 (1045)
T ss_dssp             TTEEEEECTTTCC---EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB----EEECSCC
T ss_pred             CCEEEEecCCceE---eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc----eEEccCC
Confidence            8899999874332   223333           34578999999 9999988887 7889999986543    2234556


Q ss_pred             cc-CeeEEEEcCCCCEEEEEeCCCcEE-EEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 018675          163 AQ-DVKMVQWHPTMDVLFSCSYDNTIK-VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI  240 (352)
Q Consensus       163 ~~-~v~~~~~~~~~~~l~s~~~d~~i~-iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~i  240 (352)
                      .. .+..+.|+ +++.++.++.+..+. +|+.....      ...+   . +|...+..++|+|+|++|++++.++.|++
T Consensus       336 ~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~------~~~l---~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~  404 (1045)
T 1k32_A          336 LRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK------AEKF---E-ENLGNVFAMGVDRNGKFAVVANDRFEIMT  404 (1045)
T ss_dssp             SCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC------EEEC---C-CCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC------ceEe---c-CCccceeeeEECCCCCEEEEECCCCeEEE
Confidence            66 78899999 999999988877777 77764321      1122   1 56678999999999999999999999999


Q ss_pred             EcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCC----------CeEEEEEccCCccccCcccce
Q 018675          241 WGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAAD----------DSVQFFVESKDDLIDGPSYKM  309 (352)
Q Consensus       241 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d----------~~v~~~~~~~~~~~~~~~~~~  309 (352)
                      ||+...+.            ..+...+...+..+.|+|++ +++.++.+          +.+++|+....         .
T Consensus       405 ~d~~tg~~------------~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---------~  463 (1045)
T 1k32_A          405 VDLETGKP------------TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---------K  463 (1045)
T ss_dssp             EETTTCCE------------EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---------E
T ss_pred             EECCCCce------------EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC---------c
Confidence            99753221            11111355667788999987 46665543          38889965431         1


Q ss_pred             eeecccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       310 ~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                       ......|...+..++|+|+|+. |+.++.++..++|+.
T Consensus       464 -~~~l~~~~~~~~~~~~spdG~~-l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          464 -IFAATTENSHDYAPAFDADSKN-LYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             -EEECSCSSSBEEEEEECTTSCE-EEEEESCCCCCEECS
T ss_pred             -EEEeeCCCcccCCceEcCCCCE-EEEEecccCCcCcch
Confidence             2234567778899999999975 567777877777764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.84  E-value=2.9e-18  Score=172.35  Aligned_cols=286  Identities=10%  Similarity=0.023  Sum_probs=196.2

Q ss_pred             CccceEEEEEc-cCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceec-ceEEEEECCCCCEEEEEeCCCc
Q 018675           20 HTDRVWSLAWK-PTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR-TVRSCAWSPSGKLLATASFDAT   97 (352)
Q Consensus        20 H~~~V~~i~~~-p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~d~~   97 (352)
                      |...|.+++|+ |+      ++.+++++ ++.+.+|+...+..    .. + ..|.. .+..++|+ ||+.|+.++.+..
T Consensus       294 ~~~~v~~~~~S~pd------G~~la~~~-~~~i~~~~~~~~~~----~~-~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~  359 (1045)
T 1k32_A          294 SIPSKFAEDFSPLD------GDLIAFVS-RGQAFIQDVSGTYV----LK-V-PEPLRIRYVRRGGD-TKVAFIHGTREGD  359 (1045)
T ss_dssp             ECGGGGEEEEEECG------GGCEEEEE-TTEEEEECTTSSBE----EE-C-SCCSCEEEEEECSS-SEEEEEEEETTEE
T ss_pred             cccccceeeecCCC------CCEEEEEE-cCEEEEEcCCCCce----EE-c-cCCCcceEEeeeEc-CCCeEEEEECCCc
Confidence            55679999999 87      57788877 88999999876532    11 1 23555 78999999 9999999998877


Q ss_pred             EE-EEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC
Q 018675           98 TC-IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD  176 (352)
Q Consensus        98 i~-i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  176 (352)
                      +. +|+..++..   ..+.+|...+..++|+|+|++|++++.++.|++||+..+..   .....+|...+..++|+|+++
T Consensus       360 l~~~~d~~~~~~---~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~---~~~~~~~~~~v~~~~~SpDG~  433 (1045)
T 1k32_A          360 FLGIYDYRTGKA---EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP---TVIERSREAMITDFTISDNSR  433 (1045)
T ss_dssp             EEEEEETTTCCE---EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---EEEEECSSSCCCCEEECTTSC
T ss_pred             eEEEEECCCCCc---eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce---EEeccCCCCCccceEECCCCC
Confidence            87 888766543   23347778899999999999999999999999999976542   334457888889999999999


Q ss_pred             EEEEEeCCC----------cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          177 VLFSCSYDN----------TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       177 ~l~s~~~d~----------~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      +|++++.++          .|++|++...     . ...+    ..|...+.++.|+|+|++|+.++.++..++|+....
T Consensus       434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g-----~-~~~l----~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          434 FIAYGFPLKHGETDGYVMQAIHVYDMEGR-----K-IFAA----TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             EEEEEEEECSSTTCSCCEEEEEEEETTTT-----E-EEEC----SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             eEEEEecCccccccCCCCCeEEEEECCCC-----c-EEEe----eCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence            998887654          8999987542     1 2222    246677889999999999999998888888864321


Q ss_pred             ccccC------------CC-------------------Ccc-ceeeEEeecccCcceEEEEecCCce-EEe---------
Q 018675          247 RMQSG------------DG-------------------YAS-WRHLCTISGYHDRTIFSVHWSREGI-IAS---------  284 (352)
Q Consensus       247 ~~~~~------------~~-------------------~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~~s---------  284 (352)
                      .....            ..                   ... ......+ ..+...+..+.+++++. +++         
T Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l-~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~  582 (1045)
T 1k32_A          504 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPI-NVDPGDYRMIIPLESSILIYSVPVHGEFAA  582 (1045)
T ss_dssp             CEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEEC-SCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred             ccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEc-CCCCCChhheEEcCCCeEEEEecccCcccc
Confidence            11000            00                   000 0011111 12345677888888874 443         


Q ss_pred             --cCC--CCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          285 --GAA--DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       285 --~~~--d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                        .+.  ...+..|+.....      ...    ..   ..+..++|||||+. |++++.| .|++|++...
T Consensus       583 ~~~~~~~~~~l~~~d~~~~~------~~~----l~---~~v~~~~~S~DG~~-l~~~~~~-~i~~~d~~~~  638 (1045)
T 1k32_A          583 YYQGAPEKGVLLKYDVKTRK------VTE----VK---NNLTDLRLSADRKT-VMVRKDD-GKIYTFPLEK  638 (1045)
T ss_dssp             HHHCCCCCEEEEEEETTTCC------EEE----EE---EEEEEEEECTTSCE-EEEEETT-SCEEEEESSC
T ss_pred             cccccCCCceEEEEECCCCc------EEE----ee---cCcceEEECCCCCE-EEEEcCC-cEEEEeCccC
Confidence              122  3345555443211      111    11   45889999999986 5566655 7999998653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=4.1e-18  Score=164.41  Aligned_cols=275  Identities=12%  Similarity=0.158  Sum_probs=172.3

Q ss_pred             cEEEEeeCCCeEEEEecCCCcee-eeeeee--e----------ecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 018675           40 PVFASCSGDKTVRIWEQSASSRF-WNCKAV--L----------EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGG  106 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~-~~~~~~--~----------~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~  106 (352)
                      ..+++++.|+ | +||..+++.. ......  .          ...+...|.+++|+|| +.++.+ .++.+.+||..++
T Consensus        36 ~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~  111 (706)
T 2z3z_A           36 DNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR  111 (706)
T ss_dssp             TEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT
T ss_pred             CeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCCC
Confidence            3577778888 8 9998876431 111000  0          0001146999999999 665555 4599999998776


Q ss_pred             ceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCC-----CCeeEEEEEeecCccC--------------ee
Q 018675          107 DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP-----GNEFECVSVLQGHAQD--------------VK  167 (352)
Q Consensus       107 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~-----~~~~~~~~~~~~h~~~--------------v~  167 (352)
                      +.   ..+..+...+.+++|+|+|+.|+.+ .|+.|.+||+..     +...   .....+...              +.
T Consensus       112 ~~---~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~---~~~~~~~~~~~~g~~~~~ee~~~~~  184 (706)
T 2z3z_A          112 KV---TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI---AVTIDGTETLVYGQAVHQREFGIEK  184 (706)
T ss_dssp             EE---EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE---ESCSCCBTTEEESSCCGGGCTTCCC
T ss_pred             ce---EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE---EeccCCCCCeEcccchhhhhcCCCc
Confidence            43   2334466788999999999999885 679999999876     4322   222222222              47


Q ss_pred             EEEEcCCCCEEEEEe---------------------------------CCCcEEEEecCCCCCCCceeEeeeeccCCCCc
Q 018675          168 MVQWHPTMDVLFSCS---------------------------------YDNTIKVWWAEDTDSDNWHCVQTISESNNGHS  214 (352)
Q Consensus       168 ~~~~~~~~~~l~s~~---------------------------------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~  214 (352)
                      ++.|+|+++.|++++                                 .+..|.+|++....     . ..+. ....|.
T Consensus       185 ~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~-----~-~~~~-~~~~~~  257 (706)
T 2z3z_A          185 GTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK-----T-VYLQ-TGEPKE  257 (706)
T ss_dssp             SEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE-----E-EECC-CCSCTT
T ss_pred             eEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc-----e-Eeec-cCCCCc
Confidence            899999999999887                                 34678888875431     1 1111 112466


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCC-----cEEEEcCCccccccCCCCccceeeEEeec-ccCcceEEEEecC--Cc-eEEec
Q 018675          215 STIWALSFNAKGDKLVSCSDDL-----TIKIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSR--EG-IIASG  285 (352)
Q Consensus       215 ~~i~~l~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~--~~-~~~s~  285 (352)
                      ..+.+++|+|+|++|++++.++     .|++||+...+.        ......... .....+..+.|++  ++ +++++
T Consensus       258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~--------~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~  329 (706)
T 2z3z_A          258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF--------VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS  329 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE--------EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred             eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce--------eeEEEEccCCCeECccCCceeecCCCCEEEEEE
Confidence            7899999999999999887765     899998753210        011110000 0011234567887  76 66777


Q ss_pred             CCCCeEEEEEccCCccccCcccceeeecccccCcceeE-EEecCCCcceEEEecCCC----eEEEEee
Q 018675          286 AADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS-VQWSPGERRLLASASDDG----MIKIWEL  348 (352)
Q Consensus       286 ~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~sp~~~~~l~s~~~Dg----~i~iw~~  348 (352)
                      ..++.+++|.....    +    ........|...+.. ++|+|+++.++++++.++    .|..|++
T Consensus       330 ~~~g~~~l~~~~~~----~----~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          330 RRDGWNHLYLYDTT----G----RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             CTTSSCEEEEEETT----S----CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred             ccCCccEEEEEECC----C----CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence            78888888865311    1    112234456777877 799999987777777776    4555554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.82  E-value=7.2e-17  Score=142.14  Aligned_cols=259  Identities=11%  Similarity=0.111  Sum_probs=164.2

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeC--CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe-CC
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSG--DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS-FD   95 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~--D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d   95 (352)
                      .+.....+++|+|+      +++++++..  ++.|.+|++.++..  +..... ..+...+..++|+|+|++|++++ .+
T Consensus        37 ~~~~~p~~~a~spd------g~l~~~~~~~~~~~v~~~~~~~g~~--~~~~~~-~~~~~~p~~~a~spdg~~l~~~~~~~  107 (347)
T 3hfq_A           37 AATQNPTYLALSAK------DCLYSVDKEDDEGGIAAWQIDGQTA--HKLNTV-VAPGTPPAYVAVDEARQLVYSANYHK  107 (347)
T ss_dssp             EECSCCCCEEECTT------CEEEEEEEETTEEEEEEEEEETTEE--EEEEEE-EEESCCCSEEEEETTTTEEEEEETTT
T ss_pred             eccCCcceEEEccC------CeEEEEEecCCCceEEEEEecCCcE--EEeeee-ecCCCCCEEEEECCCCCEEEEEeCCC
Confidence            45567778999996      454444432  68999999965431  111111 22456788999999999888887 67


Q ss_pred             CcEEEEEcc-CCceeeeEeecc---------ccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecC-cc
Q 018675           96 ATTCIWEDV-GGDYECVATLEG---------HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH-AQ  164 (352)
Q Consensus        96 ~~i~i~~~~-~~~~~~~~~~~~---------h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h-~~  164 (352)
                      +.+.+|+.. ++....+..+..         +...+.+++|+|+++++++...++.|.+|++...........+..+ ..
T Consensus       108 ~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~  187 (347)
T 3hfq_A          108 GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF  187 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred             CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence            899999974 333333333321         1224888999999997777677889999999733333333322222 23


Q ss_pred             CeeEEEEcCCCCEEEE-EeCCCcEEEEecCCCCCCCceeEeeeeccCCC--CcccEEEEEEcCCCCEE-EEEeCCCcEEE
Q 018675          165 DVKMVQWHPTMDVLFS-CSYDNTIKVWWAEDTDSDNWHCVQTISESNNG--HSSTIWALSFNAKGDKL-VSCSDDLTIKI  240 (352)
Q Consensus       165 ~v~~~~~~~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~l~~~~~~~~l-~s~~~dg~i~i  240 (352)
                      ....++|+|+++++++ ...++.+.+|++... .........+.....+  ....+..++|+|+|++| ++...++.|.+
T Consensus       188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v  266 (347)
T 3hfq_A          188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV  266 (347)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred             CCceEEECCCCCEEEEEeCCCCEEEEEEecCC-CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence            5678999999996655 456889999986531 1122222222211111  12458899999999977 56667899999


Q ss_pred             EcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecC-CCCeEEEEEc
Q 018675          241 WGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGA-ADDSVQFFVE  296 (352)
Q Consensus       241 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~-~d~~v~~~~~  296 (352)
                      |+++...        .......+. .+...+..+++++++ ++++++ .++.+.+|..
T Consensus       267 ~~~~~~g--------~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          267 FAVTADG--------HLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             EEECGGG--------CEEEEEEEE-CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCC--------cEEEeEEEe-cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            9875211        112222222 223456788999987 455554 4588999954

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=1.5e-17  Score=145.36  Aligned_cols=267  Identities=11%  Similarity=0.069  Sum_probs=170.4

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceec-ceEEEEECCCCCEE-EEEeCCCcEEEEEccCCceeeeEeecc-
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR-TVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEG-  116 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l-~s~~~d~~i~i~~~~~~~~~~~~~~~~-  116 (352)
                      +++++++.|++|.+||..+++....    +...+.. .+..++|+|+|+.+ +++..++.|.+||..+++......... 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~----~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKV----ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEE----EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEE----EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence            4789999999999999987643221    2111111 47889999999765 555667899999987765322222211 


Q ss_pred             --ccCCeeEEEECCCCcEEEEee------------CCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEe
Q 018675          117 --HENEVKSVSWNASGTLLATCG------------RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS  182 (352)
Q Consensus       117 --h~~~v~~v~~~~~~~~l~s~~------------~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  182 (352)
                        |...+..++|+|+++++++++            .++.|.+||+..+..   +..+.. ...+..+.|+|+++.++++ 
T Consensus        78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~~-~~~~~~~~~s~dg~~l~~~-  152 (337)
T 1pby_B           78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR---RKAFEA-PRQITMLAWARDGSKLYGL-  152 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE---EEEEEC-CSSCCCEEECTTSSCEEEE-
T ss_pred             ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE---EEEEeC-CCCcceeEECCCCCEEEEe-
Confidence              123678899999999888876            579999999865432   233332 3457788999999988777 


Q ss_pred             CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC-C-----------------------cE
Q 018675          183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD-L-----------------------TI  238 (352)
Q Consensus       183 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d-g-----------------------~i  238 (352)
                       ++.|.+|+....     .....+...  .+..+   +.|+|++.+++..+.+ +                       .|
T Consensus       153 -~~~i~~~d~~~~-----~~~~~~~~~--~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  221 (337)
T 1pby_B          153 -GRDLHVMDPEAG-----TLVEDKPIQ--SWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL  221 (337)
T ss_dssp             -SSSEEEEETTTT-----EEEEEECST--TTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred             -CCeEEEEECCCC-----cEeeeeecc--ccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence             688999987543     222222211  11122   3678998876554433 2                       35


Q ss_pred             EEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeeccccc
Q 018675          239 KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH  317 (352)
Q Consensus       239 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h  317 (352)
                      .+||+...+.         . ...+ ..+...+..+.+++++ +++++  ++.+.+|+.....         .+.... .
T Consensus       222 ~~~d~~~~~~---------~-~~~~-~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~---------~~~~~~-~  278 (337)
T 1pby_B          222 LTMDLETGEM---------A-MREV-RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA---------SIKRVP-L  278 (337)
T ss_dssp             EEEETTTCCE---------E-EEEE-EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE---------EEEEEE-C
T ss_pred             EEEeCCCCCc---------e-Eeec-CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc---------Ccceec-C
Confidence            6777643211         0 1111 1233457788999987 45544  7899999764321         111111 2


Q ss_pred             CcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          318 DMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       318 ~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ...+.+++|+|+++.++ +++.|+.|++||+..
T Consensus       279 ~~~~~~~~~s~dg~~l~-~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          279 PHSYYSVNVSTDGSTVW-LGGALGDLAAYDAET  310 (337)
T ss_dssp             SSCCCEEEECTTSCEEE-EESBSSEEEEEETTT
T ss_pred             CCceeeEEECCCCCEEE-EEcCCCcEEEEECcC
Confidence            24578999999997554 567899999999864

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.82  E-value=4.2e-18  Score=164.73  Aligned_cols=290  Identities=13%  Similarity=0.126  Sum_probs=175.4

Q ss_pred             eeecCCcc---ceEEEEEccCCCCCCCccEEEEeeCC---------CeEEEEecCCCceeeeeeeeeecceecceEEEEE
Q 018675           15 QTLEGHTD---RVWSLAWKPTAGVDGVAPVFASCSGD---------KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAW   82 (352)
Q Consensus        15 ~~~~gH~~---~V~~i~~~p~~~~~~~~~~l~s~s~D---------~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~   82 (352)
                      ..+.+|..   .|.+++|+|+      +++|++++.|         +.+.+|++.++.. ....  ....|...+..++|
T Consensus        51 ~~~~~~~~~~~~v~~~~~SpD------g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~--~~~~~~~~~~~~~~  121 (723)
T 1xfd_A           51 VLIEGKKIESLRAIRYEISPD------REYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLD--PPEVSNAKLQYAGW  121 (723)
T ss_dssp             EEECTTTTTTTTCSEEEECTT------SSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECC--CTTCCSCCCSBCCB
T ss_pred             EEeccccccccccceEEECCC------CCEEEEEecCccceeecceeeEEEEECCCCce-Eecc--CCccccccccccEE
Confidence            34455654   4999999997      5789998875         7888999987642 1111  11224445888999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCC------------------eeEEEECCCCcEEEEeeCCC----
Q 018675           83 SPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENE------------------VKSVSWNASGTLLATCGRDK----  140 (352)
Q Consensus        83 s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~------------------v~~v~~~~~~~~l~s~~~d~----  140 (352)
                      ||||+.||.++. +.|.+|+..+++...+  ...+...                  +.++.|+|+|+.|++++.|+    
T Consensus       122 SPdG~~la~~~~-~~i~~~~~~~g~~~~~--~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~  198 (723)
T 1xfd_A          122 GPKGQQLIFIFE-NNIYYCAHVGKQAIRV--VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVP  198 (723)
T ss_dssp             CSSTTCEEEEET-TEEEEESSSSSCCEEE--ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred             CCCCCEEEEEEC-CeEEEEECCCCceEEE--ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccc
Confidence            999999999886 7899998877643322  2222322                  37899999999999887653    


Q ss_pred             ------------------------------cEEEEecCCCCeeEEEEEeec------CccCeeEEEEcCCCCEEEEEeCC
Q 018675          141 ------------------------------SVWIWEVMPGNEFECVSVLQG------HAQDVKMVQWHPTMDVLFSCSYD  184 (352)
Q Consensus       141 ------------------------------~v~vwd~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l~s~~~d  184 (352)
                                                    +|.+||+..+...   ..+..      +...+..++|+|+++.+++.+..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~---~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~  275 (723)
T 1xfd_A          199 IMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD---LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR  275 (723)
T ss_dssp             EEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC---EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET
T ss_pred             eEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee---EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC
Confidence                                          7889998655421   22232      24568899999999988766533


Q ss_pred             ----CcEEEEecCCCCCCCceeEeeeeccCCCCcccE----EEEEEcCCCCEEEE--EeCCC------cEEEEc-CCccc
Q 018675          185 ----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTI----WALSFNAKGDKLVS--CSDDL------TIKIWG-ADITR  247 (352)
Q Consensus       185 ----~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i----~~l~~~~~~~~l~s--~~~dg------~i~iwd-~~~~~  247 (352)
                          ..|.+|++....     +...+..   .+...+    ..+.|+|+|+.|+.  +..++      .|.+|| .....
T Consensus       276 ~~~~~~i~~~d~~~g~-----~~~~~~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~  347 (723)
T 1xfd_A          276 AQNVSILTLCDATTGV-----CTKKHED---ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS  347 (723)
T ss_dssp             TSCEEEEEEEETTTCC-----EEEEEEE---ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred             CCCeEEEEEEeCCCCc-----ceEEEEe---ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence                478889865432     1111111   112222    26799999997764  45677      455565 22111


Q ss_pred             cccCCCCccceeeEEeecccCcceE-EEEecCCc-eEE-ecCCC--CeEEEEEccCCccccCcccceeeecccccCccee
Q 018675          248 MQSGDGYASWRHLCTISGYHDRTIF-SVHWSREG-IIA-SGAAD--DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVN  322 (352)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~-~~~-s~~~d--~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  322 (352)
                      ...      .+   .+... ...+. .+.|++++ .++ ++..+  +.+++|.......   ..... +.....|...+.
T Consensus       348 ~~~------~~---~l~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~---~~~~~-l~~~~~~~~~~~  413 (723)
T 1xfd_A          348 NDN------IQ---SITSG-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN---FNRQC-LSCDLVENCTYF  413 (723)
T ss_dssp             SCC------CC---BSCCS-SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT---CCCBC-SSTTSSSSCCCC
T ss_pred             ccc------ee---EeecC-CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC---CCcce-ecccccCCCCeE
Confidence            000      00   01111 11233 35788876 444 44444  7788886542110   00011 111112667789


Q ss_pred             EEEecCCCcceEEEecCCC
Q 018675          323 SVQWSPGERRLLASASDDG  341 (352)
Q Consensus       323 ~~~~sp~~~~~l~s~~~Dg  341 (352)
                      .++|+|+++.++++.+.+.
T Consensus       414 ~~~~spdg~~l~~~~~~~~  432 (723)
T 1xfd_A          414 SASFSHSMDFFLLKCEGPG  432 (723)
T ss_dssp             EEEECTTSSEEEEECCSSS
T ss_pred             EEEECCCCCEEEEEccCCC
Confidence            9999999987776665554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=7.1e-18  Score=159.17  Aligned_cols=268  Identities=8%  Similarity=0.017  Sum_probs=173.7

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeC-CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC---C
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSG-DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF---D   95 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~-D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d   95 (352)
                      +...|++++|+|+      ++.||+++. |++++||++.++..    .... ..+...+..++|+|| +++++++.   +
T Consensus        20 ~~~~~~~~~~~~D------G~~la~~s~~~g~~~lw~~~~g~~----~~lt-~~~~~~~~~~~~spd-~~l~~~~~~~g~   87 (582)
T 3o4h_A           20 IAVEKYSLQGVVD------GDKLLVVGFSEGSVNAYLYDGGET----VKLN-REPINSVLDPHYGVG-RVILVRDVSKGA   87 (582)
T ss_dssp             HHSCEEEEEEEET------TTEEEEEEEETTEEEEEEEETTEE----EECC-SSCCSEECEECTTCS-EEEEEEECSTTS
T ss_pred             hccchheeecCCC------CCeEEEEEccCCceeEEEEcCCCc----Eeee-cccccccccccCCCC-eEEEEeccCCCC
Confidence            3568999999997      578998887 99999999855421    2211 223357899999999 77777775   4


Q ss_pred             CcEEEEEccC--CceeeeEeeccccCCeeEEEECCCCc--EEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           96 ATTCIWEDVG--GDYECVATLEGHENEVKSVSWNASGT--LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        96 ~~i~i~~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      ....+|....  .... . .+.. ...+...+|+|+++  .+++++.|+ +.+||+..+..   .... .+..  .++.|
T Consensus        88 ~~~~l~~~~~~~~g~~-~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~---~~l~-~~~~--~~~~~  157 (582)
T 3o4h_A           88 EQHALFKVNTSRPGEE-Q-RLEA-VKPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGL---RELA-RLPG--FGFVS  157 (582)
T ss_dssp             CCEEEEEEETTSTTCC-E-ECTT-SCSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEE---EEEE-EESS--CEEEE
T ss_pred             cceEEEEEeccCCCcc-c-cccC-CCCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcE---EEee-cCCC--ceEEE
Confidence            5667775433  2111 1 2222 22344667788775  444555544 55999865532   1222 2222  78899


Q ss_pred             cCCCCEEEEEeCC----CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCC--cEEEEcCCc
Q 018675          172 HPTMDVLFSCSYD----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL--TIKIWGADI  245 (352)
Q Consensus       172 ~~~~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg--~i~iwd~~~  245 (352)
                      +|+++.+++++.+    +.|.+|++.....      ..+    ..|...+.+++|+|||+.|+++..++  .|++||++.
T Consensus       158 spDG~~la~~~~~~~~~~~i~~~d~~~g~~------~~l----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~  227 (582)
T 3o4h_A          158 DIRGDLIAGLGFFGGGRVSLFTSNLSSGGL------RVF----DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD  227 (582)
T ss_dssp             EEETTEEEEEEEEETTEEEEEEEETTTCCC------EEE----CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred             CCCCCEEEEEEEcCCCCeEEEEEcCCCCCc------eEe----ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence            9999999988877    6789998654321      122    24667789999999999999888888  899998754


Q ss_pred             cccccCCCCccceeeEEeecccCcceE--------EEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccc
Q 018675          246 TRMQSGDGYASWRHLCTISGYHDRTIF--------SVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA  316 (352)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~  316 (352)
                      ....             ....+...+.        ...|++++ ++++++.++.+++|.. .          ....   .
T Consensus       228 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g----------~~~~---~  280 (582)
T 3o4h_A          228 GSVE-------------DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-G----------ERVE---A  280 (582)
T ss_dssp             CCEE-------------ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-T----------EEEC---C
T ss_pred             CcEE-------------EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-C----------Ceec---c
Confidence            3221             1111222222        23388886 6678888999999965 1          1111   2


Q ss_pred             cCcceeEEEecCCCcceEEEecCCCe---EEEEee
Q 018675          317 HDMDVNSVQWSPGERRLLASASDDGM---IKIWEL  348 (352)
Q Consensus       317 h~~~i~~~~~sp~~~~~l~s~~~Dg~---i~iw~~  348 (352)
                      ..+.|.+++|+ +++ ++++++.+.+   +.+|+.
T Consensus       281 ~~~~v~~~~~s-dg~-~l~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          281 PQGNHGRVVLW-RGK-LVTSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             CSSEEEEEEEE-TTE-EEEEEEETTEEEEEEEETT
T ss_pred             CCCceEEEEec-CCE-EEEEEcCCCCCCeEEEEcC
Confidence            33568899999 776 5667776654   455543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=5.4e-17  Score=144.15  Aligned_cols=211  Identities=12%  Similarity=0.138  Sum_probs=134.9

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecC-CCceeeeeeeeeecceecceEEEEECCCCCE--EEEEe---
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQS-ASSRFWNCKAVLEEMHTRTVRSCAWSPSGKL--LATAS---   93 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~-~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~--l~s~~---   93 (352)
                      +...+..++|+|+      +++|++++.+ .+.+|++. +++.. .   .......+...+++|+|+|+.  ++++.   
T Consensus        38 ~~~~~~~~a~spd------g~~l~~~~~~-~v~~~~~~~~g~~~-~---~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~  106 (365)
T 1jof_A           38 QDEPISWMTFDHE------RKNIYGAAMK-KWSSFAVKSPTEIV-H---EASHPIGGHPRANDADTNTRAIFLLAAKQPP  106 (365)
T ss_dssp             TTCCCSEEEECTT------SSEEEEEEBT-EEEEEEEEETTEEE-E---EEEEECCSSGGGGCTTSCCEEEEEEECSSTT
T ss_pred             CCCCCcEEEECCC------CCEEEEEccc-eEEEEEECCCCCEE-E---eeEeecCCCCccEEECCCCCEEEEEEecCCc
Confidence            4456788999997      5788888888 99999986 44321 1   111000123456889999994  44543   


Q ss_pred             ----------CCCcEEEEEccC-Cceee-eEeec-cccCCeeEEEECCCCcEEEEee-CCCcEEEEecC-CCCeeEEEEE
Q 018675           94 ----------FDATTCIWEDVG-GDYEC-VATLE-GHENEVKSVSWNASGTLLATCG-RDKSVWIWEVM-PGNEFECVSV  158 (352)
Q Consensus        94 ----------~d~~i~i~~~~~-~~~~~-~~~~~-~h~~~v~~v~~~~~~~~l~s~~-~d~~v~vwd~~-~~~~~~~~~~  158 (352)
                                .++++.+|+... +.... +..+. .+...+.+++|+|+|++++++. .++.|.+|++. .+. ...+..
T Consensus       107 ~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~-~~~~~~  185 (365)
T 1jof_A          107 YAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE-VELVGS  185 (365)
T ss_dssp             CCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-EEEEEE
T ss_pred             ceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC-EEEeee
Confidence                      688999998753 43221 11111 2456789999999999887765 46799999986 343 222333


Q ss_pred             ee--cCccCeeEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCCCce----eEeeeeccCCCCcc------cEEEEE-EcC
Q 018675          159 LQ--GHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWH----CVQTISESNNGHSS------TIWALS-FNA  224 (352)
Q Consensus       159 ~~--~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~h~~------~i~~l~-~~~  224 (352)
                      +.  .|...+..++|+|+++++++++. ++.+.+|+..... ....    .+..+.....+|..      .+..++ |+|
T Consensus       186 ~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp  264 (365)
T 1jof_A          186 VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT-HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF  264 (365)
T ss_dssp             EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT-CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred             EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC-CcEEEccceEEcCCCCcCCcccccccccccccEEEECC
Confidence            33  23456889999999999888775 6889999764311 1111    11111111122332      588999 999


Q ss_pred             CCCEEEEEeCC-C-----cEEEEcC
Q 018675          225 KGDKLVSCSDD-L-----TIKIWGA  243 (352)
Q Consensus       225 ~~~~l~s~~~d-g-----~i~iwd~  243 (352)
                      +|++|+++..+ +     .|++|++
T Consensus       265 dG~~l~v~~~~~~~~~~~~i~v~~~  289 (365)
T 1jof_A          265 SGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             TSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             CCCEEEEECCCCCCCCCCeEEEEEE
Confidence            99988766543 2     7999975

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.81  E-value=3.4e-17  Score=143.86  Aligned_cols=263  Identities=8%  Similarity=0.002  Sum_probs=160.8

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE-EEeCCCcEEEEEccCCceeeeEeec-c
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA-TASFDATTCIWEDVGGDYECVATLE-G  116 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~d~~i~i~~~~~~~~~~~~~~~-~  116 (352)
                      +.++++++.|++|.+||..+++....    +.......+..++|+|+|+.++ ++..++.|.+||..+++.  ...+. .
T Consensus        11 ~~~~v~~~~~~~v~~~d~~~~~~~~~----~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~--~~~~~~~   84 (349)
T 1jmx_B           11 HEYMIVTNYPNNLHVVDVASDTVYKS----CVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN--TFHANLS   84 (349)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEE----EECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEESC
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEEEE----EecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE--EEEEEcc
Confidence            57899999999999999987643221    1111112467899999998654 555789999999877643  22332 2


Q ss_pred             c-----cCCeeEEEECCCCcEEEEeeCC------------CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE
Q 018675          117 H-----ENEVKSVSWNASGTLLATCGRD------------KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF  179 (352)
Q Consensus       117 h-----~~~v~~v~~~~~~~~l~s~~~d------------~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  179 (352)
                      +     ...+..++|+|+++++++++.+            +.|.+||+..+.....+..+. +...+.+++|+|+++ ++
T Consensus        85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~  162 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LY  162 (349)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EE
T ss_pred             cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EE
Confidence            2     2337899999999999988865            899999986533222233333 334688899999999 55


Q ss_pred             EEeCCCcEEEEecCCCCCCCceeEeeeeccCCC-------------------C-cccEEEEEEcCCCCE-----------
Q 018675          180 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG-------------------H-SSTIWALSFNAKGDK-----------  228 (352)
Q Consensus       180 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-------------------h-~~~i~~l~~~~~~~~-----------  228 (352)
                      +++.  .|.+|+.....     ....+.....+                   + ......+.+++++..           
T Consensus       163 ~~~~--~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  235 (349)
T 1jmx_B          163 VAGP--DIYKMDVKTGK-----YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY  235 (349)
T ss_dssp             EESS--SEEEECTTTCC-----EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             EccC--cEEEEeCCCCc-----eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence            5543  49999765421     12222111000                   0 003345666655421           


Q ss_pred             EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC-Cc-eEEecCCCCeEEEEEccCCccccCcc
Q 018675          229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EG-IIASGAADDSVQFFVESKDDLIDGPS  306 (352)
Q Consensus       229 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~s~~~d~~v~~~~~~~~~~~~~~~  306 (352)
                      +.....++.+++|+..                     .....+..+.+++ ++ +++++  ++.+.+|+.....      
T Consensus       236 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~------  286 (349)
T 1jmx_B          236 LSVDLKTGKTHTQEFA---------------------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK------  286 (349)
T ss_dssp             EEEETTTCCEEEEEEE---------------------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE------
T ss_pred             EEEeccCCcEEecccc---------------------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe------
Confidence            1122334445544321                     1234567788888 76 45444  8899999764321      


Q ss_pred             cceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          307 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       307 ~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                         .+.... ....+.+++|+|+++.++ +++.++.|++||+..
T Consensus       287 ---~~~~~~-~~~~~~~~~~s~dg~~l~-~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          287 ---LIKAAN-LDHTYYCVAFDKKGDKLY-LGGTFNDLAVFNPDT  325 (349)
T ss_dssp             ---EEEEEE-CSSCCCEEEECSSSSCEE-EESBSSEEEEEETTT
T ss_pred             ---EEEEEc-CCCCccceEECCCCCEEE-EecCCCeEEEEeccc
Confidence               111111 223578999999987655 477889999999864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=1.4e-15  Score=134.75  Aligned_cols=255  Identities=9%  Similarity=0.064  Sum_probs=158.5

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCC----CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe-C
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGD----KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS-F   94 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D----~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~   94 (352)
                      |......++|+|+      +++|++++.+    +.+.+|++............. ..+......+++  ++++|++++ .
T Consensus        48 ~~~~p~~l~~spd------g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--dg~~l~~~~~~  118 (361)
T 3scy_A           48 EVANPSYLIPSAD------GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--NGKNIVTANYS  118 (361)
T ss_dssp             ECSCCCSEEECTT------SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--CSSEEEEEETT
T ss_pred             cCCCCceEEECCC------CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--CCCEEEEEECC
Confidence            6677778899997      5788888876    799999886541111111111 112345566777  888777766 5


Q ss_pred             CCcEEEEEccCCc-eeeeEe---ec--------cccCCeeEEEECCCCcEEEEee-CCCcEEEEecCCCCe------eEE
Q 018675           95 DATTCIWEDVGGD-YECVAT---LE--------GHENEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGNE------FEC  155 (352)
Q Consensus        95 d~~i~i~~~~~~~-~~~~~~---~~--------~h~~~v~~v~~~~~~~~l~s~~-~d~~v~vwd~~~~~~------~~~  155 (352)
                      ++.+.+|+..... ......   ..        .+...+.+++|+|++++++.++ .++.|.+|++.....      ...
T Consensus       119 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~  198 (361)
T 3scy_A          119 GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLT  198 (361)
T ss_dssp             TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEE
T ss_pred             CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceee
Confidence            7899999975322 111111   11        1123457899999999665554 588999999864431      211


Q ss_pred             ----EEEeecCccCeeEEEEcCCCCEEEEEe-CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE
Q 018675          156 ----VSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV  230 (352)
Q Consensus       156 ----~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  230 (352)
                          ......+......++|+|+++++++++ .++.|.+|++...   .......+. ....+......++|+|+|++|+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g---~~~~~~~~~-~~~~~~~~~~~i~~spdg~~l~  274 (361)
T 3scy_A          199 KGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG---MLDEIQTVA-ADTVNAQGSGDIHLSPDGKYLY  274 (361)
T ss_dssp             EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT---EEEEEEEEE-SCSSCCCCEEEEEECTTSSEEE
T ss_pred             cccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC---ceEEeEEEe-cCCCCCCCcccEEECCCCCEEE
Confidence                111223344678899999999887777 5899999987532   122222222 1223445678999999999886


Q ss_pred             EEeC--CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecC-CCCeEEEEEc
Q 018675          231 SCSD--DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGA-ADDSVQFFVE  296 (352)
Q Consensus       231 s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~-~d~~v~~~~~  296 (352)
                      ++..  ++.|.+|+++...       ........+..  ...+..++|++++ ++++++ .++.+.+|..
T Consensus       275 v~~~~~~~~i~v~~~~~~~-------g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          275 ASNRLKADGVAIFKVDETN-------GTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             EEECSSSCEEEEEEECTTT-------CCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCCEEEEEEEcCCC-------CcEEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence            6655  4899999875210       01112222222  3456788999987 455554 6788999754

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=1e-17  Score=162.01  Aligned_cols=291  Identities=12%  Similarity=0.122  Sum_probs=172.8

Q ss_pred             EEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceec---ceEEEEECCCCCEEEEEeC--------
Q 018675           26 SLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR---TVRSCAWSPSGKLLATASF--------   94 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~--------   94 (352)
                      ++.|+|+      +.++++ +.|++|++|+..+++.    .... ..|..   .+.+++|||||+.|++++.        
T Consensus        20 ~~~~s~d------g~~~~~-~~d~~i~~~~~~~g~~----~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s   87 (719)
T 1z68_A           20 FPNWISG------QEYLHQ-SADNNIVLYNIETGQS----YTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYS   87 (719)
T ss_dssp             CCEESSS------SEEEEE-CTTSCEEEEESSSCCE----EEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSC
T ss_pred             ccEECCC------CeEEEE-cCCCCEEEEEcCCCcE----EEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEee
Confidence            6789997      445554 5799999999987643    1222 22222   3899999999999998876        


Q ss_pred             -CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEE------EeecCcc---
Q 018675           95 -DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS------VLQGHAQ---  164 (352)
Q Consensus        95 -d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~------~~~~h~~---  164 (352)
                       ++.+.+||..+++......+   ...+..++|+|+|+.|+.+. |+.|++|++..+.......      .+.++..   
T Consensus        88 ~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~  163 (719)
T 1z68_A           88 YTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY  163 (719)
T ss_dssp             EEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred             cceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence             78999999877643100122   25688999999999998886 7899999986654321100      0112211   


Q ss_pred             ------CeeEEEEcCCCCEEEEEeCCC----------------------------------cEEEEecCCCCCCCceeEe
Q 018675          165 ------DVKMVQWHPTMDVLFSCSYDN----------------------------------TIKVWWAEDTDSDNWHCVQ  204 (352)
Q Consensus       165 ------~v~~~~~~~~~~~l~s~~~d~----------------------------------~i~iw~~~~~~~~~~~~~~  204 (352)
                            ....+.|+|+++.|++++.|.                                  .|.+|++..........+.
T Consensus       164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~  243 (719)
T 1z68_A          164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP  243 (719)
T ss_dssp             HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred             eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence                  114799999999999887652                                  5667765432100000000


Q ss_pred             eeeccCCCCcccEEEEEEcCCCCEEEEEeCC----CcEEEEc----CCccccccCCCCccceeeEEeecccCcceE----
Q 018675          205 TISESNNGHSSTIWALSFNAKGDKLVSCSDD----LTIKIWG----ADITRMQSGDGYASWRHLCTISGYHDRTIF----  272 (352)
Q Consensus       205 ~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----  272 (352)
                       ......+|...+.+++|+||++++++....    ..|.+||    ....+...     .   .......+...+.    
T Consensus       244 -~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~-----~---~~~~~~~~~~~~~~~~~  314 (719)
T 1z68_A          244 -VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK-----T---QEHIEESRTGWAGGFFV  314 (719)
T ss_dssp             -CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG-----G---GEEEEECSSSCSSSSSC
T ss_pred             -CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE-----E---EecccccCCceEccccC
Confidence             000112577789999999998877764432    2477777    43221110     0   0000001222222    


Q ss_pred             -EEEecCCce---EEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecC----CCeEE
Q 018675          273 -SVHWSREGI---IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD----DGMIK  344 (352)
Q Consensus       273 -~~~~~~~~~---~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~----Dg~i~  344 (352)
                       .+.|++++.   +++...++...+|.....   .. .    ......+...+..+.++ +++.+++++..    ++..+
T Consensus       315 ~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~---~~-~----~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~  385 (719)
T 1z68_A          315 STPVFSYDAISYYKIFSDKDGYKHIHYIKDT---VE-N----AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRN  385 (719)
T ss_dssp             CCCEECTTSSCEEEEEECTTSCEEEEEESSC---ST-T----CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBE
T ss_pred             CccEECCCCCeEEEEEEccCCceEEEEEECC---CC-c----eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEE
Confidence             467788762   334555665555433211   01 1    11223455668887777 77777766665    58899


Q ss_pred             EEeecc
Q 018675          345 IWELAN  350 (352)
Q Consensus       345 iw~~~~  350 (352)
                      ||.+..
T Consensus       386 l~~~~~  391 (719)
T 1z68_A          386 IYRISI  391 (719)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            998753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.78  E-value=2.2e-15  Score=131.54  Aligned_cols=254  Identities=8%  Similarity=0.058  Sum_probs=158.3

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEe-eCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASC-SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~-s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      ..+..+...+ +++|+|+      +++++.+ ..++.|.+|+..++...   .... ..+..+..+++|+|+|++++++.
T Consensus        34 ~~~~~~~~~~-~~~~s~d------g~~l~~~~~~~~~i~~~d~~~~~~~---~~~~-~~~~~~~~~~~~s~dg~~l~~~~  102 (331)
T 3u4y_A           34 NQITLGYDFV-DTAITSD------CSNVVVTSDFCQTLVQIETQLEPPK---VVAI-QEGQSSMADVDITPDDQFAVTVT  102 (331)
T ss_dssp             EEEECCCCEE-EEEECSS------SCEEEEEESTTCEEEEEECSSSSCE---EEEE-EECSSCCCCEEECTTSSEEEECC
T ss_pred             eeEEccCCcc-eEEEcCC------CCEEEEEeCCCCeEEEEECCCCcee---EEec-ccCCCCccceEECCCCCEEEEec
Confidence            3344455666 9999997      3545444 45899999999876431   1111 22334444499999999998555


Q ss_pred             CCC---cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEE-EEeeCCCc-EEEEecCCCCeeEEE-EEeecCccCee
Q 018675           94 FDA---TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKS-VWIWEVMPGNEFECV-SVLQGHAQDVK  167 (352)
Q Consensus        94 ~d~---~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~-v~vwd~~~~~~~~~~-~~~~~h~~~v~  167 (352)
                      .++   .+.+||..+++.  +..+.. ...+.+++|+|+|+++ ++...++. +.+|++......... ...........
T Consensus       103 ~~~~~~~i~v~d~~~~~~--~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~  179 (331)
T 3u4y_A          103 GLNHPFNMQSYSFLKNKF--ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPF  179 (331)
T ss_dssp             CSSSSCEEEEEETTTTEE--EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEE
T ss_pred             CCCCcccEEEEECCCCCe--EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCcc
Confidence            443   899999876643  334433 3457899999999854 45566688 999998654322111 11123344578


Q ss_pred             EEEEcCCCCEEEEE-eCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEcCCc
Q 018675          168 MVQWHPTMDVLFSC-SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGADI  245 (352)
Q Consensus       168 ~~~~~~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~-~~dg~i~iwd~~~  245 (352)
                      .+.|+|+++.++.+ ..++.|.+|+......  ......+.     ....+..++|+|+|++++.+ ..++.|.+||...
T Consensus       180 ~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~--~~~~~~~~-----~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          180 NITFTPDGNFAFVANLIGNSIGILETQNPEN--ITLLNAVG-----TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEECSSTTS--CEEEEEEE-----CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCCcc--cceeeecc-----CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence            99999999966544 4688999998764321  11122332     22456789999999976544 4578899999764


Q ss_pred             cccccCCCCccceeeEEeec---ccCc---ceEEEEecCCc-e-EEecCCCCeEEEEEccC
Q 018675          246 TRMQSGDGYASWRHLCTISG---YHDR---TIFSVHWSREG-I-IASGAADDSVQFFVESK  298 (352)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~---~~~~---~i~~~~~~~~~-~-~~s~~~d~~v~~~~~~~  298 (352)
                      .+..         ....+..   ....   ....+++++++ + ++++..++.+.+|+...
T Consensus       253 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          253 GTLS---------FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             TEEE---------EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             Ccee---------eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence            3221         0111100   0011   12346888876 3 45666677999997654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.77  E-value=5.4e-16  Score=138.53  Aligned_cols=293  Identities=11%  Similarity=0.050  Sum_probs=175.9

Q ss_pred             eeeeecCCccceEE-----EEEccCCCCCCCccEEEEeeC-CCe--EEEEecCCCceeeeeeeeeecceecceEEEEECC
Q 018675           13 EIQTLEGHTDRVWS-----LAWKPTAGVDGVAPVFASCSG-DKT--VRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP   84 (352)
Q Consensus        13 ~~~~~~gH~~~V~~-----i~~~p~~~~~~~~~~l~s~s~-D~~--v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~   84 (352)
                      .+..+..|......     .+|+|+      ++.|+.++. |+.  |.+|+..++..    .... ..+...+..+.|+|
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpD------g~~l~~~~~~~g~~~l~~~d~~~g~~----~~lt-~~~~~~~~~~~~sp   90 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRD------GSKLLFGGAFDGPWNYYLLDLNTQVA----TQLT-EGRGDNTFGGFLSP   90 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTT------SCEEEEEECTTSSCEEEEEETTTCEE----EECC-CSSCBCSSSCEECT
T ss_pred             ceEEecCCcccccchhhcCccCCCC------CCEEEEEEcCCCCceEEEEeCCCCce----EEee-eCCCCCccceEEcC
Confidence            44566667666655     789997      567888777 774  66667766532    1211 22444445678999


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEE--ECCCCcEEEEe----------------------eCCC
Q 018675           85 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS--WNASGTLLATC----------------------GRDK  140 (352)
Q Consensus        85 ~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~--~~~~~~~l~s~----------------------~~d~  140 (352)
                      ||+.|+.++.++.+.+||..+++...+.  ..+...+....  ++|++.+++..                      +.+.
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (388)
T 3pe7_A           91 DDDALFYVKDGRNLMRVDLATLEENVVY--QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC  168 (388)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEE--ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeee--echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcc
Confidence            9999999999999999998877644333  33344443333  48999988742                      2456


Q ss_pred             cEEEEecCCCCeeEEEEEeecCccCeeEEEEcC-CCCEEEEEeCC------CcEEEEecCCCCCCCceeEeeeeccCCCC
Q 018675          141 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYD------NTIKVWWAEDTDSDNWHCVQTISESNNGH  213 (352)
Q Consensus       141 ~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~h  213 (352)
                      .|.+||+..+..    ..+..+...+..+.|+| ++..++..+.+      ..|.+++.....      ...+..   ..
T Consensus       169 ~l~~~d~~~g~~----~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------~~~l~~---~~  235 (388)
T 3pe7_A          169 RLMRVDLKTGES----TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN------MRKVKT---HA  235 (388)
T ss_dssp             EEEEEETTTCCE----EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC------CEESCC---CC
T ss_pred             eEEEEECCCCce----EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc------eEEeee---CC
Confidence            799999876542    22334455688999999 99888777653      266666654321      111211   11


Q ss_pred             -cccEEEEEEcCCCCEEEEEeC-CC----cEEEEcCCccccccCCCCccceeeEEeecc-c-CcceEEEEecCCc-eEE-
Q 018675          214 -SSTIWALSFNAKGDKLVSCSD-DL----TIKIWGADITRMQSGDGYASWRHLCTISGY-H-DRTIFSVHWSREG-IIA-  283 (352)
Q Consensus       214 -~~~i~~l~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~-~~~-  283 (352)
                       ...+..+.|+|+|+.|+..+. ++    .|.+||+...+.         +.+..+... + ........|++++ .++ 
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~---------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~  306 (388)
T 3pe7_A          236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN---------RQLTSMPACSHLMSNYDGSLMVGDGSDAPV  306 (388)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE---------EEEEEECCEEEEEECTTSSEEEEEECCC--
T ss_pred             CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce---------EEEEcCCCceeeeecCCCCeEccCCCccee
Confidence             135778899999997765443 22    399998764321         111111110 0 0000001355554 232 


Q ss_pred             ec--------CCCCeEEEEEccCCccccCcccceeeecccccCc-----------ceeEEEecCCCcceEEEecCCCeEE
Q 018675          284 SG--------AADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM-----------DVNSVQWSPGERRLLASASDDGMIK  344 (352)
Q Consensus       284 s~--------~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~i~~~~~sp~~~~~l~s~~~Dg~i~  344 (352)
                      +.        ..+..+++|+......      .    ....|..           .+.+++|+||++.++.++..+|...
T Consensus       307 ~~~~~~~~~~~~~~~i~~~d~~~~~~------~----~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~  376 (388)
T 3pe7_A          307 DVQDDSGYKIENDPFLYVFNMKNGTQ------H----RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPA  376 (388)
T ss_dssp             ----------CCCCEEEEEETTTTEE------E----EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred             EeeeccccccCCCCEEEEEeccCCce------E----EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCcee
Confidence            21        4456788886543211      1    1122322           5788999999988777777789888


Q ss_pred             EEeecc
Q 018675          345 IWELAN  350 (352)
Q Consensus       345 iw~~~~  350 (352)
                      ||.+..
T Consensus       377 l~~~~l  382 (388)
T 3pe7_A          377 LYLATL  382 (388)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            887753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.77  E-value=1.1e-15  Score=134.56  Aligned_cols=240  Identities=10%  Similarity=0.095  Sum_probs=162.1

Q ss_pred             ecceEEEEECCCCCEEEEEeC-------CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcE-EEEeeCCCcEEEE
Q 018675           74 TRTVRSCAWSPSGKLLATASF-------DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIW  145 (352)
Q Consensus        74 ~~~v~~~~~s~~~~~l~s~~~-------d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~vw  145 (352)
                      ...+..++|+|+|+.+++++.       ++.+.+||..+++.  ...+. ....+..+.|+|+++. +++...++.|.+|
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV--TQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE--EEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE--EEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            456789999999998887774       46799999876643  33333 2345788999999985 4555667999999


Q ss_pred             ecCCCCeeEEEEEeecCcc---------CeeEEEEcCCCCEEEEEe--CCCcEEEEecCCCCCCCceeEeeeeccCCCCc
Q 018675          146 EVMPGNEFECVSVLQGHAQ---------DVKMVQWHPTMDVLFSCS--YDNTIKVWWAEDTDSDNWHCVQTISESNNGHS  214 (352)
Q Consensus       146 d~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~  214 (352)
                      |+..++..   ..+..+..         .+..+.|+|+++.+++++  .++.|.+|+....     .....+.    .+.
T Consensus       117 d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~-----~~~~~~~----~~~  184 (353)
T 3vgz_A          117 DAKTGEVK---GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI-----KLKTAIQ----NTG  184 (353)
T ss_dssp             ETTTCCEE---EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT-----EEEEEEC----CCC
T ss_pred             eCCCCeeE---EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC-----ceEEEec----CCC
Confidence            98766532   23332221         267899999999877665  4788999986532     2223322    133


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeec---ccCcceEEEEecCCc--eEEecCCCC
Q 018675          215 STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG---YHDRTIFSVHWSREG--IIASGAADD  289 (352)
Q Consensus       215 ~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~--~~~s~~~d~  289 (352)
                      ..+..+.|+|+++++++++.++.|.+||....+.           ...+..   .+...+..+.+++++  .+++...++
T Consensus       185 ~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  253 (353)
T 3vgz_A          185 KMSTGLALDSEGKRLYTTNADGELITIDTADNKI-----------LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA  253 (353)
T ss_dssp             TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE-----------EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSS
T ss_pred             CccceEEECCCCCEEEEEcCCCeEEEEECCCCeE-----------EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCC
Confidence            4467889999999999999999999999753221           111111   123346678888865  344555568


Q ss_pred             eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       290 ~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .+.+|+......         +.......  -..++|+|+++.++++...++.|.+||...
T Consensus       254 ~v~~~d~~~~~~---------~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          254 EVLVVDTRNGNI---------LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             EEEEEETTTCCE---------EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEECCCCcE---------EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            999997643221         11111111  257999999987888888899999999864

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.76  E-value=2.4e-17  Score=155.55  Aligned_cols=233  Identities=12%  Similarity=0.140  Sum_probs=155.9

Q ss_pred             ceecceEEEEECCCCCEEEEEeC-CCcEEEEEccCCceeeeEeecccc-CCeeEEEECCCCcEEEEeeC---CCcEEEEe
Q 018675           72 MHTRTVRSCAWSPSGKLLATASF-DATTCIWEDVGGDYECVATLEGHE-NEVKSVSWNASGTLLATCGR---DKSVWIWE  146 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s~~~-d~~i~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~---d~~v~vwd  146 (352)
                      .+..+|++++|+|||+.||+++. |+++.||+..+++.   ..+..|. ..+..+.|+|+ +++++++.   +....+|.
T Consensus        19 ~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           19 LIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred             HhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc---EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence            34568999999999999999887 99999999765532   2334444 68999999999 77777765   45567766


Q ss_pred             cCC--CCeeEEEEEeecCccCeeEEEEcCCCCE-EEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc
Q 018675          147 VMP--GNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN  223 (352)
Q Consensus       147 ~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~  223 (352)
                      +..  .....   .+.. .......+|+|+++. +++.+.++.+.+|++....      ...+..    +..  .++.|+
T Consensus        95 ~~~~~~g~~~---~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~------~~~l~~----~~~--~~~~~s  158 (582)
T 3o4h_A           95 VNTSRPGEEQ---RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG------LRELAR----LPG--FGFVSD  158 (582)
T ss_dssp             EETTSTTCCE---ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE------EEEEEE----ESS--CEEEEE
T ss_pred             EeccCCCccc---cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc------EEEeec----CCC--ceEEEC
Confidence            543  22211   1221 223446688888753 3344444555599765431      112211    111  688999


Q ss_pred             CCCCEEEEEeCC----CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCC--eEEEEEc
Q 018675          224 AKGDKLVSCSDD----LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADD--SVQFFVE  296 (352)
Q Consensus       224 ~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~--~v~~~~~  296 (352)
                      |||++|++++.+    +.|++||+.....         +   .+ ..+...+..+.|+|++ .++++..++  .+++|+.
T Consensus       159 pDG~~la~~~~~~~~~~~i~~~d~~~g~~---------~---~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~  225 (582)
T 3o4h_A          159 IRGDLIAGLGFFGGGRVSLFTSNLSSGGL---------R---VF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDP  225 (582)
T ss_dssp             EETTEEEEEEEEETTEEEEEEEETTTCCC---------E---EE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECT
T ss_pred             CCCCEEEEEEEcCCCCeEEEEEcCCCCCc---------e---Ee-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcC
Confidence            999999988877    7899998753221         1   11 1244567889999987 566666777  6777754


Q ss_pred             cCCccccCcccceeeecccccCcceeEEE--------ecCCCcceEEEecCCCeEEEEee
Q 018675          297 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQ--------WSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~--------~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      ....         .. ...+|...+..++        |+||+ .++++++.||+++||++
T Consensus       226 ~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          226 RDGS---------VE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID  274 (582)
T ss_dssp             TTCC---------EE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET
T ss_pred             CCCc---------EE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE
Confidence            3321         11 3346666777777        99999 68899999999999986

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.76  E-value=6.3e-17  Score=156.44  Aligned_cols=293  Identities=13%  Similarity=0.137  Sum_probs=171.3

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeC---------CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSG---------DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~---------D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      .|.+++|+|+      +++|+.++.         |+++++|++.+++...  ...+    ...+..++|||||+.|+.+.
T Consensus        61 ~~~~~~~SpD------g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~--~~~l----~~~~~~~~~SPDG~~la~~~  128 (719)
T 1z68_A           61 NASNYGLSPD------RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR--GNEL----PRPIQYLCWSPVGSKLAYVY  128 (719)
T ss_dssp             TCSEEEECTT------SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC--SSCC----CSSBCCEEECSSTTCEEEEE
T ss_pred             ceeeEEECCC------CCeEEEEecCceeEEeecceEEEEEECCCCcccc--ceec----CcccccceECCCCCEEEEEE
Confidence            3899999997      578888876         7999999998764210  0111    24578899999999999886


Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCCe-----------------eEEEECCCCcEEEEeeCCC----------------
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENEV-----------------KSVSWNASGTLLATCGRDK----------------  140 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v-----------------~~v~~~~~~~~l~s~~~d~----------------  140 (352)
                       |+.|.+|+..+++...+ +..++...|                 .++.|+|+|+.|++++.|.                
T Consensus       129 -~~~i~~~~~~~g~~~~l-~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~  206 (719)
T 1z68_A          129 -QNNIYLKQRPGDPPFQI-TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQY  206 (719)
T ss_dssp             -TTEEEEESSTTSCCEEC-CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSS
T ss_pred             -CCeEEEEeCCCCCcEEE-ecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCC
Confidence             78999998876643221 122332222                 5899999999999988652                


Q ss_pred             ------------------cEEEEecCCCCee--EEE---EEeecCccCeeEEEEcCCCCEEEEEeCCC----cEEEEe--
Q 018675          141 ------------------SVWIWEVMPGNEF--ECV---SVLQGHAQDVKMVQWHPTMDVLFSCSYDN----TIKVWW--  191 (352)
Q Consensus       141 ------------------~v~vwd~~~~~~~--~~~---~~~~~h~~~v~~~~~~~~~~~l~s~~~d~----~i~iw~--  191 (352)
                                        +|++||+..+...  ..+   ..+.+|...+..++|+|++.++++.....    .|.+|+  
T Consensus       207 ~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~  286 (719)
T 1z68_A          207 PRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFR  286 (719)
T ss_dssp             CEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEEC
T ss_pred             ccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEccc
Confidence                              7889998654321  011   11235677789999999987666643322    377777  


Q ss_pred             --cCCCCCCCceeEeeeeccCCCCcccEE-----EEEEcCCCCEEE--EEeCCCc--EEEEcCCccccccCCCCccceee
Q 018675          192 --AEDTDSDNWHCVQTISESNNGHSSTIW-----ALSFNAKGDKLV--SCSDDLT--IKIWGADITRMQSGDGYASWRHL  260 (352)
Q Consensus       192 --~~~~~~~~~~~~~~~~~~~~~h~~~i~-----~l~~~~~~~~l~--s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~  260 (352)
                        .....     +...+.....+|...+.     .+.|+|+|+.++  ++..+|.  |.+|++.....            
T Consensus       287 ~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~------------  349 (719)
T 1z68_A          287 EDWQTWD-----CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA------------  349 (719)
T ss_dssp             SSSSSEE-----CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC------------
T ss_pred             CCCCCCc-----eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce------------
Confidence              43221     11111000013444554     688999998554  4556665  44455432111            


Q ss_pred             EEeecccCcceEEEEecCCceEE-ecCC----CCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEE
Q 018675          261 CTISGYHDRTIFSVHWSREGIIA-SGAA----DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA  335 (352)
Q Consensus       261 ~~~~~~~~~~i~~~~~~~~~~~~-s~~~----d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~  335 (352)
                      ..+.. ....+..+.+.+++.++ ++..    ++..++|......-  ......+.....+|...+..++|+|+++.++.
T Consensus       350 ~~lt~-~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g--~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~  426 (719)
T 1z68_A          350 IQITS-GKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSY--PPSKKCVTCHLRKERCQYYTASFSDYAKYYAL  426 (719)
T ss_dssp             EECSC-SSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSS--SCCEEESSTTTTTTTBCBEEEEECGGGSSEEE
T ss_pred             Eeccc-CceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCC--CCCceeccCccCCCCCceEEEEECCCCCEEEE
Confidence            01111 12223333323444444 4433    47778886532100  00011111112336677889999999887666


Q ss_pred             EecCC--CeEEEEeec
Q 018675          336 SASDD--GMIKIWELA  349 (352)
Q Consensus       336 s~~~D--g~i~iw~~~  349 (352)
                      +++.+  ..+.+|++.
T Consensus       427 ~~s~~~~p~~~l~d~~  442 (719)
T 1z68_A          427 VCYGPGIPISTLHDGR  442 (719)
T ss_dssp             EECCBSSCEEEEECSS
T ss_pred             EcCCCCCCeEEEEECC
Confidence            66555  467788764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.72  E-value=4.5e-15  Score=129.52  Aligned_cols=239  Identities=10%  Similarity=0.124  Sum_probs=155.4

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe---------
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS---------   93 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~---------   93 (352)
                      .+.+++|+|+.     ..++++++.++.|.+|+..+++............|...+..++|+|+|+.|+++.         
T Consensus        35 ~~~~~~~s~dg-----~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  109 (337)
T 1pby_B           35 TPMVPMVAPGG-----RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH  109 (337)
T ss_dssp             CCCCEEECTTS-----SEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CccceEEcCCC-----CEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccc
Confidence            47889999973     2355677778999999998765432221100001233677899999999988886         


Q ss_pred             ---CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           94 ---FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        94 ---~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                         .++.+.+||..+++.  ...+.. ...+.++.|+|++++|+++  ++.|.+||+..+.   ....+..+.. ...+.
T Consensus       110 ~~~~~~~i~v~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~---~~~~~~~~~~-~~~~~  180 (337)
T 1pby_B          110 FEVQPTRVALYDAETLSR--RKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT---LVEDKPIQSW-EAETY  180 (337)
T ss_dssp             EEECCCEEEEEETTTTEE--EEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE---EEEEECSTTT-TTTTB
T ss_pred             ccccCceEEEEECCCCcE--EEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc---Eeeeeecccc-CCCce
Confidence               579999999876543  333332 4567889999999988777  6889999986553   2333332220 11236


Q ss_pred             EcCCCCEEEEEeCCC------------------------cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC
Q 018675          171 WHPTMDVLFSCSYDN------------------------TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG  226 (352)
Q Consensus       171 ~~~~~~~l~s~~~d~------------------------~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~  226 (352)
                      |+|++..++..+..+                        .|.+|+......   . ...+    ..+...+.+++|+|++
T Consensus       181 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---~-~~~~----~~~~~~~~~~~~s~dg  252 (337)
T 1pby_B          181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM---A-MREV----RIMDVFYFSTAVNPAK  252 (337)
T ss_dssp             CCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE---E-EEEE----EECSSCEEEEEECTTS
T ss_pred             eCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc---e-Eeec----CCCCCceeeEEECCCC
Confidence            788887665444332                        356777654321   1 1111    1344568889999999


Q ss_pred             CEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccC
Q 018675          227 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESK  298 (352)
Q Consensus       227 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~  298 (352)
                      ++++++  ++.|.+||++..+           ....+.  ....+..+.+++++ ++++++.++.+.+|+...
T Consensus       253 ~~l~~~--~~~v~~~d~~~~~-----------~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          253 TRAFGA--YNVLESFDLEKNA-----------SIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             SEEEEE--ESEEEEEETTTTE-----------EEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             CEEEEe--CCeEEEEECCCCc-----------Ccceec--CCCceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence            998888  7999999975321           111221  12346778889876 566777899999997643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.69  E-value=3.6e-15  Score=144.60  Aligned_cols=283  Identities=12%  Similarity=0.164  Sum_probs=169.8

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeeccee-----cceEEEEECCCCCEEEEEeCC
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT-----RTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      .....++.|+|+      +++++++  |++|++|+..+++..    ..+ ..|.     ......+|||||+.|+.++.+
T Consensus        16 ~~~~~~~~w~~d------g~~~~~~--~~~i~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~   82 (740)
T 4a5s_A           16 RLKLYSLRWISD------HEYLYKQ--ENNILVFNAEYGNSS----VFL-ENSTFDEFGHSINDYSISPDGQFILLEYNY   82 (740)
T ss_dssp             CCCCCCEEECSS------SEEEEEE--TTEEEEEETTTCCEE----EEE-CTTTTTTCCSCCCEEEECTTSSEEEEEEEE
T ss_pred             cccccccEECCC------CcEEEEc--CCcEEEEECCCCceE----EEE-echhhhhhcccccceEECCCCCEEEEEECC
Confidence            345668999997      4678875  999999999877532    111 1122     123457899999999998876


Q ss_pred             ---------CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCcc--
Q 018675           96 ---------ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ--  164 (352)
Q Consensus        96 ---------~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~--  164 (352)
                               +.+.+||..+++.   ..+..|.+.+...+|||+|+.|+.++ |+.|.+|++..+.... + +..++..  
T Consensus        83 ~~~~r~~~~~~~~~~d~~~~~~---~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~-l-t~~g~~~~~  156 (740)
T 4a5s_A           83 VKQWRHSYTASYDIYDLNKRQL---ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR-I-TWTGKEDII  156 (740)
T ss_dssp             EECSSSCEEEEEEEEETTTTEE---CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-C-CSCCBTTTE
T ss_pred             eeeEEEccceEEEEEECCCCcE---EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE-E-cCCCCccce
Confidence                     4566999887753   23556778899999999999998875 6889999986554221 1 1112221  


Q ss_pred             ---------------CeeEEEEcCCCCEEEEEeCCCc-EEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE
Q 018675          165 ---------------DVKMVQWHPTMDVLFSCSYDNT-IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK  228 (352)
Q Consensus       165 ---------------~v~~~~~~~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~  228 (352)
                                     ....+.|+||++.|+.++.|.. +.+|++......            .++...+..+.|.+.|..
T Consensus       157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~------------~~~~~~~~~~~yp~~G~~  224 (740)
T 4a5s_A          157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE------------SLQYPKTVRVPYPKAGAV  224 (740)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST------------TCSSCEEEEEECCBTTSC
T ss_pred             ecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC------------CCCCCcceeecCCCCcCc
Confidence                           1234889999999998876554 778754321100            023455667778777643


Q ss_pred             EEEEeCCCcEEEEcCCc---cccccCCCCccceeeEEeec-----ccCcceEEEEecCCce-EEec----CCCCeEEEEE
Q 018675          229 LVSCSDDLTIKIWGADI---TRMQSGDGYASWRHLCTISG-----YHDRTIFSVHWSREGI-IASG----AADDSVQFFV  295 (352)
Q Consensus       229 l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~-~~s~----~~d~~v~~~~  295 (352)
                          .....|++||++.   ....      .   ...+..     .+...+..+.|+|++. ++..    ..+..+.+|+
T Consensus       225 ----~~~~~l~v~d~~~~~~~~~~------~---~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d  291 (740)
T 4a5s_A          225 ----NPTVKFFVVNTDSLSSVTNA------T---SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICD  291 (740)
T ss_dssp             ----CCEEEEEEEETTSCCSSSCC------C---EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEE
T ss_pred             ----CCeeEEEEEECCCCCCCCcc------e---EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEE
Confidence                1223688898754   2100      0   001111     1445578889999885 3222    2233677776


Q ss_pred             ccCCcccc-CcccceeeecccccCccee-----EEEecCCCcceEEEec-CCCe--EEEEeec
Q 018675          296 ESKDDLID-GPSYKMLLKKEKAHDMDVN-----SVQWSPGERRLLASAS-DDGM--IKIWELA  349 (352)
Q Consensus       296 ~~~~~~~~-~~~~~~~~~~~~~h~~~i~-----~~~~sp~~~~~l~s~~-~Dg~--i~iw~~~  349 (352)
                      ........ ......+.  ..+|...|.     ..+|+|||+.++...+ .+|.  |.+|++.
T Consensus       292 ~~tg~~~~~~~~~~~l~--~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~  352 (740)
T 4a5s_A          292 YDESSGRWNCLVARQHI--EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID  352 (740)
T ss_dssp             EETTTTEEEECGGGCEE--EECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred             CCCCccccceeEEEEee--eccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence            54322000 00001111  134555554     7899999986552444 4554  5566653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.68  E-value=8.9e-14  Score=123.34  Aligned_cols=164  Identities=11%  Similarity=0.053  Sum_probs=110.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEcc-CCceeeeEeeccccCCeeEEEECCCCcE--EEEee-------------C
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDV-GGDYECVATLEGHENEVKSVSWNASGTL--LATCG-------------R  138 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~--l~s~~-------------~  138 (352)
                      ..+..++|+|+|++|++++.+ .+.+|+.. +++.........+ +.+..++|+|+|++  +++++             .
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            357789999999999988888 99999975 5543222222111 34667899999994  45553             6


Q ss_pred             CCcEEEEecCC-CCeeEEEEEee-cCccCeeEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCCCceeEeeeeccCCCCcc
Q 018675          139 DKSVWIWEVMP-GNEFECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSS  215 (352)
Q Consensus       139 d~~v~vwd~~~-~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~  215 (352)
                      ++++.+|++.. +.....+..+. .+...+.+++|+|++++++++.. ++.|.+|++..  .........+.  ...|..
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~--~g~~~~~~~~~--~~~~g~  193 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA--SGEVELVGSVD--APDPGD  193 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT--TSCEEEEEEEE--CSSTTC
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECC--CCCEEEeeeEe--cCCCCC
Confidence            89999999864 33222222221 23456889999999998877664 67899998752  11121122221  112346


Q ss_pred             cEEEEEEcCCCCEEEEEeC-CCcEEEEcCC
Q 018675          216 TIWALSFNAKGDKLVSCSD-DLTIKIWGAD  244 (352)
Q Consensus       216 ~i~~l~~~~~~~~l~s~~~-dg~i~iwd~~  244 (352)
                      .+..++|+|+|+++++++. ++.|.+|+.+
T Consensus       194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          194 HPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence            6889999999999887764 7899999753

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.68  E-value=1.1e-14  Score=139.36  Aligned_cols=297  Identities=11%  Similarity=0.015  Sum_probs=174.4

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEe--eCCCeEEEEecCCCceeeeeeeeeecceecceE---------EEEEC-
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASC--SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR---------SCAWS-   83 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~--s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~s-   83 (352)
                      .+.+|...|.+++|+++      .-.+++.  +.|+..+||....+...   ...  ..|...+.         ...|+ 
T Consensus        18 ~~~~~~~~~~~~~~s~~------~~~~~~~~~~~~~~~~l~~~~~~~~~---~~l--~~~~~~~~~~~~~~~~~~~~~~~   86 (662)
T 3azo_A           18 LVASRSGRPACVGAVGD------EVWWVAPRPAEAGRATLVRRRADGAE---ESA--LPAPWNVRNRVFEYSGFPWAGVP   86 (662)
T ss_dssp             HHHHTCSCCEEEEEETT------EEEEEEEETTTTTEEEEEEECTTSCE---EES--SCTTCCBCCCGGGTCCCCEEEEC
T ss_pred             HHhhcCCccceeEEcCC------eEEEEecCcccCCcEEEEEECCCCCc---cee--CCCCccccccccccCCccceeee
Confidence            46789999999999985      3466666  56889999986333221   111  11223333         44454 


Q ss_pred             -CCCCE-EEEEeC-CCcEEEEEcc--C-CceeeeEeecc-----ccCCeeEEEECCCCcEEEEeeCC----------CcE
Q 018675           84 -PSGKL-LATASF-DATTCIWEDV--G-GDYECVATLEG-----HENEVKSVSWNASGTLLATCGRD----------KSV  142 (352)
Q Consensus        84 -~~~~~-l~s~~~-d~~i~i~~~~--~-~~~~~~~~~~~-----h~~~v~~v~~~~~~~~l~s~~~d----------~~v  142 (352)
                       |||+. |+.++. +..|.+++..  + +..   ..+..     |...+..++|+|+|+.|+.++.|          ..|
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~---~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i  163 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP---RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL  163 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTTCCCC---EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCCCCCC---EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence             99998 776554 4455555543  2 322   23333     56678899999999999988877          589


Q ss_pred             EEEecCCC-----CeeEEEEEee-cCccCeeEEEEcCCCCEEEEEeCCC--------cEEEEecCCCCCCCceeEeeeec
Q 018675          143 WIWEVMPG-----NEFECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYDN--------TIKVWWAEDTDSDNWHCVQTISE  208 (352)
Q Consensus       143 ~vwd~~~~-----~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~--------~i~iw~~~~~~~~~~~~~~~~~~  208 (352)
                      .+||+...     ...   ..+. .+...+..++|+|+++.|+.++.++        .|.+|++...  ........+. 
T Consensus       164 ~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~--g~~~~~~~l~-  237 (662)
T 3azo_A          164 AAVPLDGSAAADRSAV---RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED--GRFADTRTLL-  237 (662)
T ss_dssp             EEEETTSTTTTCGGGS---EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT--SCEEEEEEEE-
T ss_pred             EEEECCCCccccCCce---eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC--CcccccEEeC-
Confidence            99998651     221   2333 4455677889999999998777553        6888887521  1011112221 


Q ss_pred             cCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE--cCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEec
Q 018675          209 SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW--GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASG  285 (352)
Q Consensus       209 ~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~  285 (352)
                        .+|...+..+.|+|+|++++++..++..+||  +....+.........  ..  ....-...+..+.+++++ +++++
T Consensus       238 --~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~--~~--~~p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          238 --GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREE--EF--AGPLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             --EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSS--BS--SCCCCSTTCCSEEECTTSCEEEEE
T ss_pred             --CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccc--cc--cCccccccCceEeEeCCCEEEEEE
Confidence              1345678999999999988888888855555  432211110000000  00  000000013346666655 66666


Q ss_pred             CCCCeEEEEEccCCccccCcccceeeecccccCcceeEE-EecCCCcceEEEecCCCeEEEEee
Q 018675          286 AADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV-QWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       286 ~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~-~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      .. +..++|......       .. ......|...+..+ +++++ ..++++++.+....||.+
T Consensus       312 ~~-~~~~l~~~d~~~-------~~-~~~l~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          312 GK-GAAVLGILDPES-------GE-LVDAAGPWTEWAATLTVSGT-RAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             BS-SSCEEEEEETTT-------TE-EEECCSSCCEEEEEEEEETT-EEEEEEEETTEEEEEEEE
T ss_pred             Ec-CccEEEEEECCC-------Cc-EEEecCCCCeEEEEEecCCC-EEEEEEcCCCCCCEEEEE
Confidence            66 888888543110       01 22344566677777 66543 345566677766666654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.67  E-value=7.3e-13  Score=113.15  Aligned_cols=246  Identities=14%  Similarity=0.209  Sum_probs=164.5

Q ss_pred             cCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeee-eecceecceEEEEE-CCCCCEEEEEeC-
Q 018675           18 EGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAV-LEEMHTRTVRSCAW-SPSGKLLATASF-   94 (352)
Q Consensus        18 ~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~-~~~~h~~~v~~~~~-s~~~~~l~s~~~-   94 (352)
                      .+|.....++++.|+      +.++++.+.++.|.+|+... ......... ....+...+..+++ .++++++++... 
T Consensus        26 ~g~~~~p~~v~~~~~------g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~   98 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQ------NDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP   98 (286)
T ss_dssp             TTCBSCEEEEEECTT------CCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred             CCccCCCceEEECCC------CCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC
Confidence            356778999999986      46788888899999999763 222111100 00123356789999 578877777643 


Q ss_pred             CCcEEEEEccCCceeeeEeec-cccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEee--cCccCeeEEEE
Q 018675           95 DATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ--GHAQDVKMVQW  171 (352)
Q Consensus        95 d~~i~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~h~~~v~~~~~  171 (352)
                      ++.|.+|+. .++.  ...+. .+...+..+++.++++++++...++.|.+||.. +..   +..+.  .+...+..+++
T Consensus        99 ~~~i~~~d~-~g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~---~~~~~~~~~~~~p~~i~~  171 (286)
T 1q7f_A           99 THQIQIYNQ-YGQF--VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNV---LHKFGCSKHLEFPNGVVV  171 (286)
T ss_dssp             GCEEEEECT-TSCE--EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---EEEEECTTTCSSEEEEEE
T ss_pred             CCEEEEECC-CCcE--EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCE---EEEeCCCCccCCcEEEEE
Confidence            789999984 3332  23332 334578999999999988888888999999953 332   22222  34456789999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCC-cEEEEcCCcccccc
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL-TIKIWGADITRMQS  250 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~  250 (352)
                      +|++.++++...++.|.+|+....      ....+.  ..++...+..++++|+|.++++...++ .|.+|+.+..    
T Consensus       172 ~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~--~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~----  239 (286)
T 1q7f_A          172 NDKQEIFISDNRAHCVKVFNYEGQ------YLRQIG--GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ----  239 (286)
T ss_dssp             CSSSEEEEEEGGGTEEEEEETTCC------EEEEES--CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC----
T ss_pred             CCCCCEEEEECCCCEEEEEcCCCC------EEEEEc--cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC----
Confidence            999987777778999999975321      122221  123335688999999999999888776 9999985321    


Q ss_pred             CCCCccceeeEEeec-ccCcceEEEEecCCceEEecCCCCeEEEEEcc
Q 018675          251 GDGYASWRHLCTISG-YHDRTIFSVHWSREGIIASGAADDSVQFFVES  297 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~  297 (352)
                              ....+.. .....+..+++++++.+..++.++.+++|...
T Consensus       240 --------~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~  279 (286)
T 1q7f_A          240 --------LISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYV  279 (286)
T ss_dssp             --------EEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             --------EEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcc
Confidence                    1111111 12234678888888755555678999999653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.66  E-value=5.1e-13  Score=114.10  Aligned_cols=240  Identities=13%  Similarity=0.131  Sum_probs=158.8

Q ss_pred             ecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeec------cccCCeeEEEE-CCCCcEEEEeeC-CCcEEEE
Q 018675           74 TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE------GHENEVKSVSW-NASGTLLATCGR-DKSVWIW  145 (352)
Q Consensus        74 ~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~------~h~~~v~~v~~-~~~~~~l~s~~~-d~~v~vw  145 (352)
                      -....+++++++|+++++...++.|.+|+.... .  ...+.      ++...+..+++ .+++.++++... ++.|.+|
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-F--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-E--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             cCCCceEEECCCCCEEEEECCCCEEEEECCCCc-E--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            356788999999999888888999999986532 2  22221      24457889999 577777776643 7899999


Q ss_pred             ecCCCCeeEEEEEee-cCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcC
Q 018675          146 EVMPGNEFECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNA  224 (352)
Q Consensus       146 d~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~  224 (352)
                      |. .+..   +..+. .+...+..+++.|++.++++...++.|.+|+....      ....+..  .++...+..++++|
T Consensus       106 d~-~g~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~--~~~~~~p~~i~~~~  173 (286)
T 1q7f_A          106 NQ-YGQF---VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------VLHKFGC--SKHLEFPNGVVVND  173 (286)
T ss_dssp             CT-TSCE---EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------EEEEEEC--TTTCSSEEEEEECS
T ss_pred             CC-CCcE---EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC------EEEEeCC--CCccCCcEEEEECC
Confidence            93 3432   22232 23356789999999988887777889999964321      1222211  13345688999999


Q ss_pred             CCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeec-ccCcceEEEEecCCc-eEEecCCCC-eEEEEEccCCcc
Q 018675          225 KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG-YHDRTIFSVHWSREG-IIASGAADD-SVQFFVESKDDL  301 (352)
Q Consensus       225 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~s~~~d~-~v~~~~~~~~~~  301 (352)
                      +|+++++...++.|++|+.+...            ...+.. .+...+..+++++++ ++++...++ .+.+|+..... 
T Consensus       174 ~g~l~v~~~~~~~i~~~~~~g~~------------~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~-  240 (286)
T 1q7f_A          174 KQEIFISDNRAHCVKVFNYEGQY------------LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL-  240 (286)
T ss_dssp             SSEEEEEEGGGTEEEEEETTCCE------------EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCE-
T ss_pred             CCCEEEEECCCCEEEEEcCCCCE------------EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCE-
Confidence            99988888889999999864211            111111 112457788888876 555555565 89999643211 


Q ss_pred             ccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          302 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       302 ~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                           ...+ . .......+.+++++|+++ ++++ +.|+.|++|++..
T Consensus       241 -----~~~~-~-~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          241 -----ISAL-E-SKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             -----EEEE-E-ESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSC
T ss_pred             -----EEEE-c-ccCCCCcceeEEECCCCc-EEEE-CCCCeEEEEEccc
Confidence                 1111 1 111223478999999985 7777 5699999999753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.65  E-value=5.1e-13  Score=116.75  Aligned_cols=248  Identities=14%  Similarity=0.105  Sum_probs=163.6

Q ss_pred             cceEEEEECCCCCEEEEEeCC------------------------CcEEEEEccCCceeeeEee-ccccCCeeEEEECCC
Q 018675           75 RTVRSCAWSPSGKLLATASFD------------------------ATTCIWEDVGGDYECVATL-EGHENEVKSVSWNAS  129 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d------------------------~~i~i~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~  129 (352)
                      ..+.+++++|+|+++++...+                        +.|.+||..+++.  .... .++-..+..++++|+
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI--LQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE--EEEECTTTCSSEEEEEECTT
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE--EeccCCCccCCceEEEECCC
Confidence            578999999999999988877                        4799998766653  2222 244457889999999


Q ss_pred             CcEEEEeeCCCcEEEEecCCCCeeEEEEEe---------ecCccCeeEEEEcC-CCCEEEEEe-CCCcEEEEecCCCCCC
Q 018675          130 GTLLATCGRDKSVWIWEVMPGNEFECVSVL---------QGHAQDVKMVQWHP-TMDVLFSCS-YDNTIKVWWAEDTDSD  198 (352)
Q Consensus       130 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~---------~~h~~~v~~~~~~~-~~~~l~s~~-~d~~i~iw~~~~~~~~  198 (352)
                      |+++++...++.|++|+.....  ..+..+         .++......++++| ++.++++.+ .++.|++|+....   
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~--~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~---  176 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKE--GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK---  176 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSS--CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC---
T ss_pred             CCEEEEECCCCEEEEEeCCCCe--EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC---
Confidence            9998888889999999964321  112222         23344678999999 788888876 6899999973221   


Q ss_pred             CceeEeeeeccC------CCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEee-cccCcc
Q 018675          199 NWHCVQTISESN------NGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS-GYHDRT  270 (352)
Q Consensus       199 ~~~~~~~~~~~~------~~h~~~i~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  270 (352)
                         ....+....      .++......|+++|+ +.++++...+++|++|+.+..+.           ...+. ..+...
T Consensus       177 ---~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~-----------~~~~~~~~~~~~  242 (329)
T 3fvz_A          177 ---FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF-----------VREIKHASFGRN  242 (329)
T ss_dssp             ---EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------EEEECCTTTTTC
T ss_pred             ---EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE-----------EEEEeccccCCC
Confidence               122221100      123345889999998 78888888899999998752211           11111 123345


Q ss_pred             eEEEEecCCc-------eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeE
Q 018675          271 IFSVHWSREG-------IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMI  343 (352)
Q Consensus       271 i~~~~~~~~~-------~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i  343 (352)
                      ++.+.++|+-       .+++...+..+++|+.....+.      ..+....++......++++|++ .++++...++.|
T Consensus       243 ~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~------~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I  315 (329)
T 3fvz_A          243 VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII------DVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTV  315 (329)
T ss_dssp             EEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEE------EEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCE
T ss_pred             cceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEE------EEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEE
Confidence            6666666621       2223334457888865432211      1111123566779999999998 689999999999


Q ss_pred             EEEeecc
Q 018675          344 KIWELAN  350 (352)
Q Consensus       344 ~iw~~~~  350 (352)
                      ++|++..
T Consensus       316 ~~~~~~~  322 (329)
T 3fvz_A          316 WKFTLTE  322 (329)
T ss_dssp             EEEEEEE
T ss_pred             EEEeCCc
Confidence            9999853

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.64  E-value=1.8e-14  Score=128.74  Aligned_cols=276  Identities=8%  Similarity=0.041  Sum_probs=160.4

Q ss_pred             eEEEEEccCCCCCCCccEEEEeeC-C--CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEE
Q 018675           24 VWSLAWKPTAGVDGVAPVFASCSG-D--KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCI  100 (352)
Q Consensus        24 V~~i~~~p~~~~~~~~~~l~s~s~-D--~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i  100 (352)
                      +.+++|+|+      ++.++..+. +  ..+.+|+..++..    .... ..+......+.|+|||+.|+.++.++.+.+
T Consensus        38 ~~~~~~Spd------G~~l~~~~~~~g~~~l~~~d~~~~~~----~~l~-~~~~~~~~~~~~spdg~~l~~~~~~~~l~~  106 (396)
T 3c5m_A           38 FYQKCFTQD------GKKLLFAGDFDGNRNYYLLNLETQQA----VQLT-EGKGDNTFGGFISTDERAFFYVKNELNLMK  106 (396)
T ss_dssp             TTSCCBCTT------SCEEEEEECTTSSCEEEEEETTTTEE----EECC-CSSCBCTTTCEECTTSSEEEEEETTTEEEE
T ss_pred             eecCcCCCC------CCEEEEEEecCCCceEEEEECCCCcE----EEee-cCCCCccccceECCCCCEEEEEEcCCcEEE
Confidence            777889997      466665543 3  3677778766532    1111 111122233789999999999999999999


Q ss_pred             EEccCCceeeeEeeccccCCeeE-------------------EEECCCCcEEEEe-----eCCCcEEEEecCCCCeeEEE
Q 018675          101 WEDVGGDYECVATLEGHENEVKS-------------------VSWNASGTLLATC-----GRDKSVWIWEVMPGNEFECV  156 (352)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~v~~-------------------v~~~~~~~~l~s~-----~~d~~v~vwd~~~~~~~~~~  156 (352)
                      |+..+++...+..  .+......                   +.|+|+++.++.+     ..+..|.+||+..+....  
T Consensus       107 ~d~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~--  182 (396)
T 3c5m_A          107 VDLETLEEQVIYT--VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV--  182 (396)
T ss_dssp             EETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE--
T ss_pred             EECCCCCcEEEEe--cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe--
Confidence            9987765433332  22221111                   3456776655443     456789999987654221  


Q ss_pred             EEeecCccCeeEEEEcC-CCCEEEEEeCC------CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE
Q 018675          157 SVLQGHAQDVKMVQWHP-TMDVLFSCSYD------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL  229 (352)
Q Consensus       157 ~~~~~h~~~v~~~~~~~-~~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  229 (352)
                        +..+...+..+.|+| ++..++..+.+      ..|.+|+.....      ...+..  ......+..+.|+|+|++|
T Consensus       183 --~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------~~~l~~--~~~~~~~~~~~~spdg~~l  252 (396)
T 3c5m_A          183 --IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN------VRKIKE--HAEGESCTHEFWIPDGSAM  252 (396)
T ss_dssp             --EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC------CEESSC--CCTTEEEEEEEECTTSSCE
T ss_pred             --eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc------eeEeec--cCCCccccceEECCCCCEE
Confidence              223556788899999 77766665543      357777654321      111211  0012357889999999987


Q ss_pred             EEEeCC-----CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC-Cc-eEEecC----------------
Q 018675          230 VSCSDD-----LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EG-IIASGA----------------  286 (352)
Q Consensus       230 ~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~s~~----------------  286 (352)
                      +..+.+     +.|.+||+.....         ..+....    . .. ..|++ ++ .++.++                
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~g~~---------~~l~~~~----~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~  317 (396)
T 3c5m_A          253 AYVSYFKGQTDRVIYKANPETLEN---------EEVMVMP----P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE  317 (396)
T ss_dssp             EEEEEETTTCCEEEEEECTTTCCE---------EEEEECC----S-EE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred             EEEecCCCCccceEEEEECCCCCe---------EEeeeCC----C-CC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence            776543     4499998753211         1111111    1 11 56666 65 444332                


Q ss_pred             CCCeEEEEEccCCccccCcccceeeecccccCc-----------ceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          287 ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM-----------DVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       287 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----------~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      .+..+++|+......      ..    ...+..           .+..++|+|+++.++.+...++...||.+.
T Consensus       318 ~~~~i~~~d~~~~~~------~~----l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          318 NDPFLYVLNTKAKSA------QK----LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCCEEEEEETTTTBC------CE----EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCcEEEEecccCce------EE----ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence            246778886543211      11    112222           256788999998766666667777787764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.63  E-value=5.1e-14  Score=123.51  Aligned_cols=194  Identities=14%  Similarity=0.155  Sum_probs=131.9

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecce-----ecceEEEEECCCCCEEEEEeCC--
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH-----TRTVRSCAWSPSGKLLATASFD--   95 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~~~d--   95 (352)
                      .+.+++|+|+.     ..++++++.++.|.+|+..+++......    ..+     ...+..++|+|+|+.|++++.+  
T Consensus        44 ~~~~~~~s~dg-----~~~~v~~~~~~~i~~~d~~t~~~~~~~~----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  114 (349)
T 1jmx_B           44 GPGTAMMAPDN-----RTAYVLNNHYGDIYGIDLDTCKNTFHAN----LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQ  114 (349)
T ss_dssp             SSCEEEECTTS-----SEEEEEETTTTEEEEEETTTTEEEEEEE----SCCSTTEEEECSSCEEECTTSSEEEEEEEEEE
T ss_pred             CCceeEECCCC-----CEEEEEeCCCCcEEEEeCCCCcEEEEEE----cccccccccccccceEECCCCCEEEEEccccc
Confidence            57789999973     1345666678999999998765322211    111     2347889999999999988865  


Q ss_pred             ----------CcEEEEEccCCce-eeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecC--
Q 018675           96 ----------ATTCIWEDVGGDY-ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH--  162 (352)
Q Consensus        96 ----------~~i~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h--  162 (352)
                                +.+.+||..+++. ..+.... +...+.+++|+|+++ ++.++.  .|.+||+..+....   .+..+  
T Consensus       115 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~---~~~~~~~  187 (349)
T 1jmx_B          115 RLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTV---ALPLRNW  187 (349)
T ss_dssp             ECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEE---EECSTTC
T ss_pred             ccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceec---ccccccc
Confidence                      8999999876432 1222232 344688999999999 555543  49999986554322   11111  


Q ss_pred             ------------------------------------------------------------------ccCeeEEEEcC-CC
Q 018675          163 ------------------------------------------------------------------AQDVKMVQWHP-TM  175 (352)
Q Consensus       163 ------------------------------------------------------------------~~~v~~~~~~~-~~  175 (352)
                                                                                        ...+..+.++| ++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg  267 (349)
T 1jmx_B          188 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP  267 (349)
T ss_dssp             CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT
T ss_pred             CCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC
Confidence                                                                              11344667889 99


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          176 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       176 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      +.++++  ++.|.+|++...     .....+.     ....+.+++|+|++++|++++.++.|++||.+
T Consensus       268 ~~l~~~--~~~v~~~d~~~~-----~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          268 NQIYGV--LNRLAKYDLKQR-----KLIKAAN-----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             TEEEEE--ESEEEEEETTTT-----EEEEEEE-----CSSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred             CEEEEE--cCeEEEEECccC-----eEEEEEc-----CCCCccceEECCCCCEEEEecCCCeEEEEecc
Confidence            988887  889999986542     2223332     12346689999999988888889999999975

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.63  E-value=1.2e-13  Score=133.81  Aligned_cols=215  Identities=13%  Similarity=0.179  Sum_probs=130.6

Q ss_pred             eeecCCccc-----eEEEEEccCCCCCCCccEEEEeeCC---------CeEEEEecCCCceeeeeeeeeecceecceEEE
Q 018675           15 QTLEGHTDR-----VWSLAWKPTAGVDGVAPVFASCSGD---------KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSC   80 (352)
Q Consensus        15 ~~~~gH~~~-----V~~i~~~p~~~~~~~~~~l~s~s~D---------~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~   80 (352)
                      ..+.+|...     ..++.|+|+      ++.++.++.+         +.+.+||+.+++.    ...  ..|...+...
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~Spd------g~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~----~~l--~~~~~~~~~~  117 (740)
T 4a5s_A           50 VFLENSTFDEFGHSINDYSISPD------GQFILLEYNYVKQWRHSYTASYDIYDLNKRQL----ITE--ERIPNNTQWV  117 (740)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTT------SSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----CCS--SCCCTTEEEE
T ss_pred             EEEechhhhhhcccccceEECCC------CCEEEEEECCeeeEEEccceEEEEEECCCCcE----EEc--ccCCCcceee
Confidence            345666543     234788997      5788888877         4556999987642    111  2356789999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCe-----------------eEEEECCCCcEEEEeeCCC---
Q 018675           81 AWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEV-----------------KSVSWNASGTLLATCGRDK---  140 (352)
Q Consensus        81 ~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v-----------------~~v~~~~~~~~l~s~~~d~---  140 (352)
                      +|||||+.||.+. |+.|.+|+..+++... .+..++...+                 ..+.|+|||+.|+.++.|.   
T Consensus       118 ~~SPdG~~la~~~-~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v  195 (740)
T 4a5s_A          118 TWSPVGHKLAYVW-NNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEV  195 (740)
T ss_dssp             EECSSTTCEEEEE-TTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred             EECCCCCEEEEEE-CCeEEEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCC
Confidence            9999999999884 6899999877665322 2223333222                 3589999999998876433   


Q ss_pred             ---------------------------------cEEEEecCC---CCeeEEEEEee-----cCccCeeEEEEcCCCCEEE
Q 018675          141 ---------------------------------SVWIWEVMP---GNEFECVSVLQ-----GHAQDVKMVQWHPTMDVLF  179 (352)
Q Consensus       141 ---------------------------------~v~vwd~~~---~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~  179 (352)
                                                       +|.+||+..   +..........     +|...+..++|+|+++.++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~  275 (740)
T 4a5s_A          196 PLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISL  275 (740)
T ss_dssp             CEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEE
T ss_pred             ceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEE
Confidence                                             467777765   42111111111     2666788999999998665


Q ss_pred             EEeC----CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEE-----EEEEcCCCCEEE-EEe-CCC--cEEEEcCC
Q 018675          180 SCSY----DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW-----ALSFNAKGDKLV-SCS-DDL--TIKIWGAD  244 (352)
Q Consensus       180 s~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~-----~l~~~~~~~~l~-s~~-~dg--~i~iwd~~  244 (352)
                      ....    +..|.+|+...... .+.|.........+|...|.     ...|+|||+.|+ ..+ .+|  .|.+|+.+
T Consensus       276 ~~~~r~~~~~~i~~~d~~tg~~-~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~  352 (740)
T 4a5s_A          276 QWLRRIQNYSVMDICDYDESSG-RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID  352 (740)
T ss_dssp             EEEESSTTEEEEEEEEEETTTT-EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred             EEeCCCCCEEEEEEEECCCCcc-ccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence            5432    23688888654320 01111000000012333333     678999999876 555 455  56666654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.63  E-value=5.7e-12  Score=110.00  Aligned_cols=214  Identities=10%  Similarity=0.021  Sum_probs=138.2

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      ....+.++...+.+++|+|+      +.+++++..++.|.+|+..++...    ... ..+...+.+++++|+|+++++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~------g~l~~~~~~~~~i~~~d~~~~~~~----~~~-~~~~~~~~~i~~~~dg~l~v~~  104 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQ------GQLFLLDVFEGNIFKINPETKEIK----RPF-VSHKANPAAIKIHKDGRLFVCY  104 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTT------SCEEEEETTTCEEEEECTTTCCEE----EEE-ECSSSSEEEEEECTTSCEEEEE
T ss_pred             eeEEEeccCccccCcEECCC------CCEEEEECCCCEEEEEeCCCCcEE----EEe-eCCCCCcceEEECCCCcEEEEe
Confidence            34456677778899999986      467778888999999998765321    111 1244678999999999988877


Q ss_pred             eCC----CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC------CCcEEEEecCCCCeeEEEEEeecC
Q 018675           93 SFD----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR------DKSVWIWEVMPGNEFECVSVLQGH  162 (352)
Q Consensus        93 ~~d----~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~h  162 (352)
                      ..+    +.|.+|+..++..........+...+.++.++|++.++++...      .+.|..++...+. ...   +..+
T Consensus       105 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~  180 (333)
T 2dg1_A          105 LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTP---IIQN  180 (333)
T ss_dssp             CTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEE---EEEE
T ss_pred             CCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE-EEE---eecC
Confidence            666    6899998766543322111123457899999999988877654      2445555543222 221   1122


Q ss_pred             ccCeeEEEEcCCCCEEE-EEeCCCcEEEEecCCCCCCCceeEe-eeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 018675          163 AQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQ-TISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI  240 (352)
Q Consensus       163 ~~~v~~~~~~~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~i  240 (352)
                      ......++|+|+++.++ +.+.++.|.+|+..... ....... .......++ ..+..++++++|.++++...++.|.+
T Consensus       181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g-~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~  258 (333)
T 2dg1_A          181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDG-VTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLV  258 (333)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS-SSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC-cCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEE
Confidence            33567899999998654 44567899999874211 1111100 111111122 35778999999998888888889999


Q ss_pred             EcC
Q 018675          241 WGA  243 (352)
Q Consensus       241 wd~  243 (352)
                      ||.
T Consensus       259 ~d~  261 (333)
T 2dg1_A          259 FNK  261 (333)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            975

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.62  E-value=2.9e-12  Score=112.47  Aligned_cols=239  Identities=13%  Similarity=0.189  Sum_probs=148.2

Q ss_pred             CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC---Cc--EEEEEccCCceeeeEeeccccCCee
Q 018675           48 DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD---AT--TCIWEDVGGDYECVATLEGHENEVK  122 (352)
Q Consensus        48 D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~--i~i~~~~~~~~~~~~~~~~h~~~v~  122 (352)
                      ++.|.+|+..++..    .. +     ..+..++|+|||+.|+..+.+   +.  |.+|+..+++...+.   .+.. +.
T Consensus        42 ~~~l~~~d~~~~~~----~~-l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~---~~~~-~~  107 (347)
T 2gop_A           42 ENTIVIENLKNNAR----RF-I-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL---EAKN-IR  107 (347)
T ss_dssp             EEEEEEEETTTCCE----EE-E-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE---EESE-EE
T ss_pred             cceEEEEeCCCCce----EE-c-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE---cCCC-cc
Confidence            67788888876532    11 1     457889999999999887754   34  556666655433222   2233 89


Q ss_pred             EEEECCCCcEEEEeeCC---------------------------CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCC
Q 018675          123 SVSWNASGTLLATCGRD---------------------------KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM  175 (352)
Q Consensus       123 ~v~~~~~~~~l~s~~~d---------------------------~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  175 (352)
                      .+.|+|+++.|+.++.+                           ..|.+||+..+.....   +.. . .+..+.|+|++
T Consensus       108 ~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~---l~~-~-~~~~~~~spdg  182 (347)
T 2gop_A          108 SLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE---FEK-P-RFSSGIWHRDK  182 (347)
T ss_dssp             EEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE---EEE-E-TTCEEEEETTE
T ss_pred             ceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee---ecC-C-CcccccCCCCe
Confidence            99999999988877642                           5788899865432122   222 2 67889999999


Q ss_pred             CEEEEEeCCC-------cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCC--------cEEE
Q 018675          176 DVLFSCSYDN-------TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL--------TIKI  240 (352)
Q Consensus       176 ~~l~s~~~d~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg--------~i~i  240 (352)
                       +++++..+.       ...+|.+. .  ..   ...+..    + ..+.++  +|+|++|+.++.++        .|.+
T Consensus       183 -~~~~~~~~~~~~~~~~~~~l~~~d-~--~~---~~~l~~----~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~  248 (347)
T 2gop_A          183 -IVVNVPHREIIPQYFKFWDIYIWE-D--GK---EEKMFE----K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYI  248 (347)
T ss_dssp             -EEEEEECCCSSCCSSCCEEEEEEE-T--TE---EEEEEE----E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEE
T ss_pred             -EEEEEecccccccccccccEEEeC-C--Cc---eEEecc----C-cceeeE--CCCCCEEEEEEccccCCccccceEEE
Confidence             777776542       44566443 1  11   122221    2 334444  89999888777543        5667


Q ss_pred             EcCCccccccCCCCccceeeEEeecccCcceEE-EEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCc
Q 018675          241 WGADITRMQSGDGYASWRHLCTISGYHDRTIFS-VHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM  319 (352)
Q Consensus       241 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~  319 (352)
                      || . ...            ..+...+...+.. +.|+ ++++++++.++.+++| ... .    .    . .....+..
T Consensus       249 ~d-~-~~~------------~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~-g----~----~-~~~~~~~~  302 (347)
T 2gop_A          249 YD-G-KEV------------MGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWD-G----E----I-KPIAKGRH  302 (347)
T ss_dssp             EC-S-SCE------------EESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EES-S----S----E-EEEECSSS
T ss_pred             EC-C-Cce------------EeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcC-C----c----e-EEEecCCC
Confidence            76 2 111            1111123344554 7888 6777888889999998 642 1    1    1 11223467


Q ss_pred             ceeEEEecCCCcceEEEecCCCeE-EEEee
Q 018675          320 DVNSVQWSPGERRLLASASDDGMI-KIWEL  348 (352)
Q Consensus       320 ~i~~~~~sp~~~~~l~s~~~Dg~i-~iw~~  348 (352)
                      .|.+++|+|  . ++++++.++.. +||.+
T Consensus       303 ~v~~~~~s~--~-~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          303 WIMGFDVDE--I-VVYLKETATRLRELFTW  329 (347)
T ss_dssp             EEEEEEESS--S-EEEEEECSSSCCEEEEE
T ss_pred             eEEeeeeeC--c-EEEEEcCCCChHHheEe
Confidence            899999998  3 55666666664 78865

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.61  E-value=2.5e-13  Score=129.95  Aligned_cols=160  Identities=9%  Similarity=0.006  Sum_probs=110.5

Q ss_pred             eecceEEEEECCCCCEEEEEeCC----------CcEEEEEccC------CceeeeEeec-cccCCeeEEEECCCCcEEEE
Q 018675           73 HTRTVRSCAWSPSGKLLATASFD----------ATTCIWEDVG------GDYECVATLE-GHENEVKSVSWNASGTLLAT  135 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d----------~~i~i~~~~~------~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s  135 (352)
                      |...+..++|+|||+.|++++.|          ..|.+|+..+      +..   ..+. .+...+..++|+|+|++|+.
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~SpDG~~la~  204 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV---RELSDDAHRFVTGPRLSPDGRQAVW  204 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS---EESSCSCSSEECCCEECTTSSEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce---eEEEecCCCcccCceECCCCCEEEE
Confidence            45678899999999999998877          5788998776      432   2334 45567888999999999988


Q ss_pred             eeCC--------CcEEEEecC-CCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeee
Q 018675          136 CGRD--------KSVWIWEVM-PGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI  206 (352)
Q Consensus       136 ~~~d--------~~v~vwd~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~  206 (352)
                      ++.+        ..|.+||+. .+..........+|...+..+.|+|++++++++..++...+|..... ....   ..+
T Consensus       205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~-~~~~---~~l  280 (662)
T 3azo_A          205 LAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPA-TGAA---TQL  280 (662)
T ss_dssp             EEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTT-TCCE---EES
T ss_pred             EECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECC-CCce---eec
Confidence            8755        379999987 34211223333445677889999999998888888885555533211 1111   111


Q ss_pred             eccCCCCcc--------cEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          207 SESNNGHSS--------TIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       207 ~~~~~~h~~--------~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      ..   .+..        .+.+++|+|++.++++++. +.+++|.+
T Consensus       281 ~~---~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          281 CR---REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             SC---CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             cc---ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence            11   1111        1456889999999999998 99999954

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.57  E-value=3.7e-12  Score=122.96  Aligned_cols=201  Identities=11%  Similarity=0.071  Sum_probs=132.0

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCC-----eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDK-----TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~-----~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      +|...+.+++|+|+      +++||.++.++     +|++|++.+++...   ...   ....+..++|+|||+.|+.++
T Consensus       122 ~~~~~~~~~~~SPD------g~~la~~~~~~G~~~~~i~v~d~~tg~~~~---~~~---~~~~~~~~~wspDg~~l~~~~  189 (710)
T 2xdw_A          122 DGTVALRGYAFSED------GEYFAYGLSASGSDWVTIKFMKVDGAKELP---DVL---ERVKFSCMAWTHDGKGMFYNA  189 (710)
T ss_dssp             TSCEEEEEEEECTT------SSEEEEEEEETTCSCEEEEEEETTTTEEEE---EEE---EEECSCCEEECTTSSEEEEEE
T ss_pred             CCCEEEEEEEECCC------CCEEEEEEcCCCCceEEEEEEECCCCCCCc---ccc---cCcccceEEEEeCCCEEEEEE
Confidence            45567889999997      56777665443     89999998765321   111   122366789999999999998


Q ss_pred             CCCc----------------EEEEEccCCcee--eeEeeccccCCeeEEEECCCCcEEEEeeC-----CCcEEEEecCC-
Q 018675           94 FDAT----------------TCIWEDVGGDYE--CVATLEGHENEVKSVSWNASGTLLATCGR-----DKSVWIWEVMP-  149 (352)
Q Consensus        94 ~d~~----------------i~i~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----d~~v~vwd~~~-  149 (352)
                      .++.                |.+|+..++...  .+.....|...+..+.|+|+|++|+.++.     +..|.+||+.. 
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~  269 (710)
T 2xdw_A          190 YPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQE  269 (710)
T ss_dssp             CCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGS
T ss_pred             ECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccc
Confidence            8766                889987665422  22232334556789999999998887764     56899999864 


Q ss_pred             -----CCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCC----cEEEEecCCCCCCCceeEeeeeccCCCCc--ccEE
Q 018675          150 -----GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN----TIKVWWAEDTDSDNWHCVQTISESNNGHS--STIW  218 (352)
Q Consensus       150 -----~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~----~i~iw~~~~~~~~~~~~~~~~~~~~~~h~--~~i~  218 (352)
                           +..  ....+..+...+.. .|+|++..|+..+..+    .|.+|++.......+..   +.    .|.  ..+.
T Consensus       270 ~~~~~~~~--~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~---l~----~~~~~~~~~  339 (710)
T 2xdw_A          270 SNGITGIL--KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV---LV----PEHEKDVLE  339 (710)
T ss_dssp             SSSSCSSC--CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---EE----CCCSSCEEE
T ss_pred             ccccCCcc--ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee---cc----CCCCCCeEE
Confidence                 221  12334445544443 5888888777665533    58888765432212322   21    122  2577


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEE
Q 018675          219 ALSFNAKGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       219 ~l~~~~~~~~l~s~~~dg~i~iw  241 (352)
                      .+.|++++.++++...|+..+||
T Consensus       340 ~~~~~~~~~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          340 WVACVRSNFLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEE
T ss_pred             EEEEEcCCEEEEEEEECCEEEEE
Confidence            88998878888888888866665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.56  E-value=6.6e-12  Score=109.64  Aligned_cols=248  Identities=11%  Similarity=0.110  Sum_probs=161.9

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCC------------------------CeEEEEecCCCceeeeeeeeeecceec
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGD------------------------KTVRIWEQSASSRFWNCKAVLEEMHTR   75 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D------------------------~~v~~w~~~~~~~~~~~~~~~~~~h~~   75 (352)
                      -.+.+.+++++|+      +.++++.+.+                        ++|.+|+..+++..    ......+-.
T Consensus        22 ~l~~v~~va~d~~------G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~----~~~~~~~~~   91 (329)
T 3fvz_A           22 LPGQVSGVALDSK------NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL----QSSGKNLFY   91 (329)
T ss_dssp             CCSCEEEEEECTT------CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE----EEECTTTCS
T ss_pred             ecCCceEEEECCC------CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE----eccCCCccC
Confidence            3567999999997      4678887777                        47999998765432    111122334


Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEee---------ccccCCeeEEEECC-CCcEEEEee-CCCcEEE
Q 018675           76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL---------EGHENEVKSVSWNA-SGTLLATCG-RDKSVWI  144 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~---------~~h~~~v~~v~~~~-~~~~l~s~~-~d~~v~v  144 (352)
                      ....++++|+|+++++...++.|.+|+..+.. ..+..+         .++-..+..++++| ++.++++.+ .++.|++
T Consensus        92 ~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~  170 (329)
T 3fvz_A           92 LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ  170 (329)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred             CceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence            67899999999999998889999999864431 123333         23445688999999 888888886 6899999


Q ss_pred             EecCCCCeeEEEEEe-------ecCccCeeEEEEcCC-CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCccc
Q 018675          145 WEVMPGNEFECVSVL-------QGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST  216 (352)
Q Consensus       145 wd~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~  216 (352)
                      |+. .+.....+...       .++......++++|+ +.++++...++.|++|+....     ..+..+.  ...+...
T Consensus       171 ~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-----~~~~~~~--~~~~~~~  242 (329)
T 3fvz_A          171 FSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-----EFVREIK--HASFGRN  242 (329)
T ss_dssp             ECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-----CEEEEEC--CTTTTTC
T ss_pred             EcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-----cEEEEEe--ccccCCC
Confidence            994 34322211110       012234778999998 677777778899999986521     1223332  1245667


Q ss_pred             EEEEEEcC------CCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEee--cccCcceEEEEecCCc-eEEecCC
Q 018675          217 IWALSFNA------KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS--GYHDRTIFSVHWSREG-IIASGAA  287 (352)
Q Consensus       217 i~~l~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~-~~~s~~~  287 (352)
                      +.+++|+|      ++..+++...+.+|++|+....+.           ...+.  ..+...+..+++++++ ++++...
T Consensus       243 ~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~-----------~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~  311 (329)
T 3fvz_A          243 VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI-----------IDVFKPVRKHFDMPHDIVASEDGTVYIGDAH  311 (329)
T ss_dssp             EEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE-----------EEEECCSSSCCSSEEEEEECTTSEEEEEESS
T ss_pred             cceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE-----------EEEEcCCCCccCCeeEEEECCCCCEEEEECC
Confidence            88999999      333333333455899998643221           11111  1234457888999887 5677777


Q ss_pred             CCeEEEEEcc
Q 018675          288 DDSVQFFVES  297 (352)
Q Consensus       288 d~~v~~~~~~  297 (352)
                      ++.|+.|...
T Consensus       312 ~~~I~~~~~~  321 (329)
T 3fvz_A          312 TNTVWKFTLT  321 (329)
T ss_dssp             SCCEEEEEEE
T ss_pred             CCEEEEEeCC
Confidence            8889888653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.54  E-value=1.6e-12  Score=125.20  Aligned_cols=203  Identities=11%  Similarity=0.033  Sum_probs=129.8

Q ss_pred             CCccceEEEEEccCCCCCCCccEEE-----EeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFA-----SCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~-----s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      +|...+.+++|+|+      +++||     +|+.+.+|++|++.+++.. . ...+   .......++|+|||+.|+.++
T Consensus       118 ~~~~~~~~~~~SPD------G~~la~~~~~~G~~~~~i~v~dl~tg~~~-~-~~~~---~~~~~~~~~wspDg~~l~~~~  186 (695)
T 2bkl_A          118 DGTVSLGTWAVSWD------GKKVAFAQKPNAADEAVLHVIDVDSGEWS-K-VDVI---EGGKYATPKWTPDSKGFYYEW  186 (695)
T ss_dssp             SSCEEEEEEEECTT------SSEEEEEEEETTCSCCEEEEEETTTCCBC-S-SCCB---SCCTTCCCEECTTSSEEEEEE
T ss_pred             CCCEEEEEEEECCC------CCEEEEEECCCCCceEEEEEEECCCCCCc-C-Cccc---CcccccceEEecCCCEEEEEE
Confidence            57778899999997      56777     4555679999999876531 0 0011   111126789999999999999


Q ss_pred             CCCc-------------EEEEEccCCce--eeeEeeccccCCeeEEEECCCCcEEEEeeCCC----cEEEEecCCCCeeE
Q 018675           94 FDAT-------------TCIWEDVGGDY--ECVATLEGHENEVKSVSWNASGTLLATCGRDK----SVWIWEVMPGNEFE  154 (352)
Q Consensus        94 ~d~~-------------i~i~~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~----~v~vwd~~~~~~~~  154 (352)
                      .|..             |.+|+..++..  .++.....|...+..+.|+|+|++|+.++.++    .|.+|+...+. . 
T Consensus       187 ~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~-  264 (695)
T 2bkl_A          187 LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-F-  264 (695)
T ss_dssp             CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-C-
T ss_pred             ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-e-
Confidence            8876             99998766542  23333344556788999999999888777665    66666643332 2 


Q ss_pred             EEEEeecCccCeeEEEEcCCCCEEEEEe---CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEE
Q 018675          155 CVSVLQGHAQDVKMVQWHPTMDVLFSCS---YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s  231 (352)
                        ..+..+...+....+ +++.+++...   .++.|.+|++.......+..+   ...  .....+..++++ ++.++++
T Consensus       265 --~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l---~~~--~~~~~l~~~~~~-~~~lv~~  335 (695)
T 2bkl_A          265 --RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEI---VPE--DSSASLLSVSIV-GGHLSLE  335 (695)
T ss_dssp             --EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEE---ECC--CSSCEEEEEEEE-TTEEEEE
T ss_pred             --EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEE---ecC--CCCCeEEEEEEE-CCEEEEE
Confidence              223334445555556 5555444443   246788887654322222222   110  113457778887 6677888


Q ss_pred             EeCCCcEEEEcC
Q 018675          232 CSDDLTIKIWGA  243 (352)
Q Consensus       232 ~~~dg~i~iwd~  243 (352)
                      ...|+..++|.+
T Consensus       336 ~~~dg~~~l~~~  347 (695)
T 2bkl_A          336 YLKDATSEVRVA  347 (695)
T ss_dssp             EEETTEEEEEEE
T ss_pred             EEECCEEEEEEE
Confidence            889999888854

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.53  E-value=9.7e-10  Score=93.87  Aligned_cols=286  Identities=8%  Similarity=-0.009  Sum_probs=181.9

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      .+..+...+.++++.|+      +.++++...++.|.+|+.. +. .....  . ..+...+.+++++++|++.++...+
T Consensus         9 ~~~~~~~~~~~i~~d~~------g~l~v~~~~~~~v~~~d~~-~~-~~~~~--~-~~~~~~~~~i~~~~~g~l~v~~~~~   77 (299)
T 2z2n_A            9 NLTNQDTGPYGITVSDK------GKVWITQHKANMISCINLD-GK-ITEYP--L-PTPDAKVMCLTISSDGEVWFTENAA   77 (299)
T ss_dssp             ECCSSSCCEEEEEECTT------SCEEEEETTTTEEEEECTT-CC-EEEEE--C-SSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             cCCCcCCCccceEECCC------CCEEEEecCCCcEEEEcCC-CC-eEEec--C-CcccCceeeEEECCCCCEEEeCCCC
Confidence            34556678999999986      4567776668999999977 32 11111  1 1123568899999999988887778


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCC
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM  175 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  175 (352)
                      +.+..|+.. +... ...+......+..+.+.+++.++++...++.|..||. .+.. .. .....+...+..+.+.+++
T Consensus        78 ~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~-~~~~~~~~~~~~i~~~~~g  152 (299)
T 2z2n_A           78 NKIGRITKK-GIIK-EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI-RE-YELPNKGSYPSFITLGSDN  152 (299)
T ss_dssp             TEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-EE-EECSSTTCCEEEEEECTTS
T ss_pred             CeEEEECCC-CcEE-EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE-EE-ecCCCCCCCCceEEEcCCC
Confidence            889998764 3322 2222234457889999999998888777888999987 3332 21 1222234567889999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCc
Q 018675          176 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA  255 (352)
Q Consensus       176 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  255 (352)
                      .+.++...++.|..|+. ..   ..   ..+.  .......+..+++++++.++++...++.|.+|+.. ....      
T Consensus       153 ~l~v~~~~~~~i~~~~~-~g---~~---~~~~--~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~------  216 (299)
T 2z2n_A          153 ALWFTENQNNAIGRITE-SG---DI---TEFK--IPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS-GEIT------  216 (299)
T ss_dssp             CEEEEETTTTEEEEECT-TC---CE---EEEE--CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEE------
T ss_pred             CEEEEeCCCCEEEEEcC-CC---cE---EEee--CCCCCCcceeEEECCCCCEEEEccCCceEEEECCC-CcEE------
Confidence            87777666788988865 21   11   1111  11234568899999999988887778899999862 1110      


Q ss_pred             cceeeEEeecccCcceEEEEecCCce-EEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceE
Q 018675          256 SWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLL  334 (352)
Q Consensus       256 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l  334 (352)
                         . .. .......+..+.+++++. +++...++.+..++... .      ....  ....+...+.++++ +++. ++
T Consensus       217 ---~-~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g-~------~~~~--~~~~~~~~~~~i~~-~~g~-l~  280 (299)
T 2z2n_A          217 ---E-FK-IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNN-I------IEEY--PIQIKSAEPHGICF-DGET-IW  280 (299)
T ss_dssp             ---E-EE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTT-E------EEEE--ECSSSSCCEEEEEE-CSSC-EE
T ss_pred             ---E-EE-CCCCCCCceeEEECCCCCEEEeccCCceEEEECCCC-c------eEEE--eCCCCCCccceEEe-cCCC-EE
Confidence               0 00 111234577888888764 44444677888886521 1      0111  12234567899999 8775 56


Q ss_pred             EEecCCCeEEEEeecc
Q 018675          335 ASASDDGMIKIWELAN  350 (352)
Q Consensus       335 ~s~~~Dg~i~iw~~~~  350 (352)
                      ++.+ .+.+..++..+
T Consensus       281 v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          281 FAME-CDKIGKLTLIK  295 (299)
T ss_dssp             EEET-TTEEEEEEEC-
T ss_pred             EEec-CCcEEEEEcCc
Confidence            5555 45566666543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.53  E-value=9e-12  Score=106.94  Aligned_cols=232  Identities=13%  Similarity=0.096  Sum_probs=146.1

Q ss_pred             cceEEEEECCCCC-EEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCee
Q 018675           75 RTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF  153 (352)
Q Consensus        75 ~~v~~~~~s~~~~-~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  153 (352)
                      ....+++|+|+|+ +++++..++.|..|+..++ .   ..+..+...+.++++++++.++++...++.|.+||...+...
T Consensus        28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~---~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L---SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E---EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e---EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence            4567889999998 7888888999999987665 2   234456678999999999998887777789999997555422


Q ss_pred             EEEEEeecC-ccCeeEEEEcCCCCEEEEEeC-----------------CCcEEEEecCCCCCCCceeEeeeeccCCCCcc
Q 018675          154 ECVSVLQGH-AQDVKMVQWHPTMDVLFSCSY-----------------DNTIKVWWAEDTDSDNWHCVQTISESNNGHSS  215 (352)
Q Consensus       154 ~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~-----------------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~  215 (352)
                      .......+. ...+..++++|++.++++.+.                 .+.|..++..    ...   ..+.    .+..
T Consensus       104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----g~~---~~~~----~~~~  172 (296)
T 3e5z_A          104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD----GTL---SAPI----RDRV  172 (296)
T ss_dssp             EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT----SCE---EEEE----CCCS
T ss_pred             EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC----CCE---EEee----cCCC
Confidence            111111111 124567899999998887321                 2344444321    111   1111    2345


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccc-eeeEEeecccCcceEEEEecCCceEEecCCCCeEEEE
Q 018675          216 TIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW-RHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFF  294 (352)
Q Consensus       216 ~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~  294 (352)
                      ..+.++|+|+++.+++.+.++.|.+|+++...        .. .....+ ......+..+++++++.+..+. ++.+.+|
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g--------~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~  242 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARG--------ETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-GDGVHVL  242 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSS--------CEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-TTEEEEE
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCC--------cCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-CCeEEEE
Confidence            67889999999988777788999999874110        00 001111 1233345567888887555444 7888888


Q ss_pred             EccCCccccCcccceeeecccccCcceeEEEe-cCCCcceEEEecCCCeE
Q 018675          295 VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW-SPGERRLLASASDDGMI  343 (352)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-sp~~~~~l~s~~~Dg~i  343 (352)
                      +...          ..+.....+.. +++++| +|+++.+++ ++.++..
T Consensus       243 ~~~g----------~~~~~~~~~~~-~~~~~f~~~d~~~L~v-~t~~~l~  280 (296)
T 3e5z_A          243 TPDG----------DELGRVLTPQT-TSNLCFGGPEGRTLYM-TVSTEFW  280 (296)
T ss_dssp             CTTS----------CEEEEEECSSC-CCEEEEESTTSCEEEE-EETTEEE
T ss_pred             CCCC----------CEEEEEECCCC-ceeEEEECCCCCEEEE-EcCCeEE
Confidence            6532          11222334555 899999 588766554 4556433

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.52  E-value=3.6e-12  Score=113.61  Aligned_cols=237  Identities=10%  Similarity=0.028  Sum_probs=139.6

Q ss_pred             EEECCCCCEEEEEeC-CCc--EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEE
Q 018675           80 CAWSPSGKLLATASF-DAT--TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECV  156 (352)
Q Consensus        80 ~~~s~~~~~l~s~~~-d~~--i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  156 (352)
                      .+|+|||+.|+.++. ++.  +.+||..+++.  .....++...+..+.|+|+++.|+.++.++.|.+||+..+....  
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~--  116 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA--TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV--  116 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE--EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE--
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce--EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee--
Confidence            789999999998887 664  66677666543  33344555555578899999999999999999999997665322  


Q ss_pred             EEeecCccCeeEE--EEcCCCCEEEEEe----------------------CCCcEEEEecCCCCCCCceeEeeeeccCCC
Q 018675          157 SVLQGHAQDVKMV--QWHPTMDVLFSCS----------------------YDNTIKVWWAEDTDSDNWHCVQTISESNNG  212 (352)
Q Consensus       157 ~~~~~h~~~v~~~--~~~~~~~~l~s~~----------------------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  212 (352)
                       ....+...+...  .++|++..++...                      .+..|.+|++....      ...+.    .
T Consensus       117 -~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~------~~~l~----~  185 (388)
T 3pe7_A          117 -VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE------STVIL----Q  185 (388)
T ss_dssp             -EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC------EEEEE----E
T ss_pred             -eeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc------eEEee----c
Confidence             223333333333  3478888876432                      34568888765432      11221    2


Q ss_pred             CcccEEEEEEcC-CCCEEEEEeCCC------cEEEEcCCccccccCCCCccceeeEEeecccC-cceEEEEecCCce-EE
Q 018675          213 HSSTIWALSFNA-KGDKLVSCSDDL------TIKIWGADITRMQSGDGYASWRHLCTISGYHD-RTIFSVHWSREGI-IA  283 (352)
Q Consensus       213 h~~~i~~l~~~~-~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~-~~  283 (352)
                      +...+..+.|+| +|+.|+....++      .|.+++.+.....            .+..... ..+....|+|++. ++
T Consensus       186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~------------~l~~~~~~~~~~~~~~spdg~~l~  253 (388)
T 3pe7_A          186 ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR------------KVKTHAEGESCTHEFWVPDGSALV  253 (388)
T ss_dssp             ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE------------ESCCCCTTEEEEEEEECTTSSCEE
T ss_pred             CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE------------EeeeCCCCcccccceECCCCCEEE
Confidence            345688999999 999888776532      5666665322111            1111111 2356678999873 43


Q ss_pred             ecCC--C---CeEEEEEccCCccccCcccceeeecccccC---cceeEEEecCCCcceEEEe--------cCCCeEEEEe
Q 018675          284 SGAA--D---DSVQFFVESKDDLIDGPSYKMLLKKEKAHD---MDVNSVQWSPGERRLLASA--------SDDGMIKIWE  347 (352)
Q Consensus       284 s~~~--d---~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~sp~~~~~l~s~--------~~Dg~i~iw~  347 (352)
                      ..+.  +   ..+++|+......      .. +....++.   .....++|+|||+.++++.        ..+..|.+|+
T Consensus       254 ~~~~~~~~~~~~l~~~d~~~g~~------~~-l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d  326 (388)
T 3pe7_A          254 YVSYLKGSPDRFIYSADPETLEN------RQ-LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN  326 (388)
T ss_dssp             EEEEETTCCCEEEEEECTTTCCE------EE-EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred             EEecCCCCCcceEEEEecCCCce------EE-EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence            3222  1   2377776543211      11 11111210   0122347999998765443        5567899999


Q ss_pred             ecc
Q 018675          348 LAN  350 (352)
Q Consensus       348 ~~~  350 (352)
                      +..
T Consensus       327 ~~~  329 (388)
T 3pe7_A          327 MKN  329 (388)
T ss_dssp             TTT
T ss_pred             ccC
Confidence            764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.49  E-value=1.2e-10  Score=103.02  Aligned_cols=272  Identities=11%  Similarity=0.057  Sum_probs=152.7

Q ss_pred             CCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe----------CCCcEEEEEccCCceeeeEeecc
Q 018675           47 GDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS----------FDATTCIWEDVGGDYECVATLEG  116 (352)
Q Consensus        47 ~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~i~i~~~~~~~~~~~~~~~~  116 (352)
                      .|++|.+||..+++...    .+. .+..+  .++|+|||+++.++.          .++.|.+||..+.+  .+..+..
T Consensus        29 ~d~~v~v~D~~t~~~~~----~i~-~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~--~~~~i~~   99 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLG----MVP-TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT--FEKEISL   99 (361)
T ss_dssp             GGCEEEEEETTTCCEEE----EEE-CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC--EEEEEEE
T ss_pred             ccCeEEEEECCCCeEEE----Eec-CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc--EEEEEEc
Confidence            47899999987765322    121 13334  889999999988876          25679999976553  2333321


Q ss_pred             ------ccCCeeEEEECCCCcEEEEeeC--CCcEEEEecCCCCeeEEEEE-eecCccCeeEEEEcCCC-CEEEEEeCCCc
Q 018675          117 ------HENEVKSVSWNASGTLLATCGR--DKSVWIWEVMPGNEFECVSV-LQGHAQDVKMVQWHPTM-DVLFSCSYDNT  186 (352)
Q Consensus       117 ------h~~~v~~v~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~~~d~~  186 (352)
                            +......++++|+|++|+++..  +++|.+||+...+   .+.. +. . .....+.+.|++ ..+++.+.|+.
T Consensus       100 ~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~---~~~~~i~-~-~~~~~v~~~p~~~~~~~~~~~dg~  174 (361)
T 2oiz_A          100 PPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD---YVEDVTA-A-AGCWSVIPQPNRPRSFMTICGDGG  174 (361)
T ss_dssp             CTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE---EEEEEGG-G-TTEEEEEECTTSSSEEEEEETTSS
T ss_pred             CccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc---EEEEEec-C-CCcceeEEcCCCCeeEEEECCCCc
Confidence                  2245678999999999988864  6899999987553   2333 22 1 122235566765 57788889999


Q ss_pred             EEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeE---Ee
Q 018675          187 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLC---TI  263 (352)
Q Consensus       187 i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~  263 (352)
                      +.+|+....... ....... ........++ .+.++|++..++..+.++.+.++|+.......   ...+....   ..
T Consensus       175 ~~~v~~~~~g~~-~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---~~~~~~~~~~~~~  248 (361)
T 2oiz_A          175 LLTINLGEDGKV-ASQSRSK-QMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---DGPWSLLNDEDKA  248 (361)
T ss_dssp             EEEEEECTTSSE-EEEEECC-CCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---EEEEESCCHHHHH
T ss_pred             EEEEEECCCCcE-eeecccc-ceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCcee---cccccccCccccc
Confidence            988876432110 0000000 0011111122 23345677777777788999999874211100   00000000   00


Q ss_pred             ecccCcceEEEEecCC-ceE-EecC----------CCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCc
Q 018675          264 SGYHDRTIFSVHWSRE-GII-ASGA----------ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER  331 (352)
Q Consensus       264 ~~~~~~~i~~~~~~~~-~~~-~s~~----------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  331 (352)
                      ..........+.++++ +.+ ++..          ..+.+.+|+....         +.+.....+.  ..+++|+|+++
T Consensus       249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------~~v~~i~~~~--p~~ia~spdg~  317 (361)
T 2oiz_A          249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------QRVARIPGRD--ALSMTIDQQRN  317 (361)
T ss_dssp             TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------EEEEEEECTT--CCEEEEETTTT
T ss_pred             cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------cEEEEEecCC--eeEEEECCCCC
Confidence            0000000111344554 333 3222          1346888865432         2233334444  99999999998


Q ss_pred             ceEEEecCCCeEEEEeeccC
Q 018675          332 RLLASASDDGMIKIWELANT  351 (352)
Q Consensus       332 ~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      .++ +++. ++|.|||.+..
T Consensus       318 ~l~-v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          318 LML-TLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEE-EECS-SCEEEEECSSS
T ss_pred             EEE-EeCC-CeEEEEECCCC
Confidence            655 4554 99999998753

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.47  E-value=1.9e-10  Score=98.63  Aligned_cols=239  Identities=14%  Similarity=0.103  Sum_probs=152.0

Q ss_pred             eeecCCccceEEEEEccCCCCCCCcc-EEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAP-VFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~-~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      ..+..+.....+++|+|+      +. +++++..++.|..|+..++  ...    + ..+...+.+++++|+|+++++..
T Consensus        21 ~~l~~~~~~~eg~~~d~~------g~~l~~~~~~~~~i~~~~~~~~--~~~----~-~~~~~~~~~l~~~~dg~l~v~~~   87 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPA------RSAVIFSDVRQNRTWAWSDDGQ--LSP----E-MHPSHHQNGHCLNKQGHLIACSH   87 (296)
T ss_dssp             EEEECCCSSEEEEEEEGG------GTEEEEEEGGGTEEEEEETTSC--EEE----E-ESSCSSEEEEEECTTCCEEEEET
T ss_pred             EEEecCCccccCCeEeCC------CCEEEEEeCCCCEEEEEECCCC--eEE----E-ECCCCCcceeeECCCCcEEEEec
Confidence            344456677889999997      44 7888888999999998765  111    1 12456789999999999888777


Q ss_pred             CCCcEEEEEccCCceeeeEee-cc-ccCCeeEEEECCCCcEEEEeeC-----------------CCcEEEEecCCCCeeE
Q 018675           94 FDATTCIWEDVGGDYECVATL-EG-HENEVKSVSWNASGTLLATCGR-----------------DKSVWIWEVMPGNEFE  154 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~-~~-h~~~v~~v~~~~~~~~l~s~~~-----------------d~~v~vwd~~~~~~~~  154 (352)
                      .++.|.+|+..+++....... .+ ....++.++++|+|+++++.+.                 .+.|..++..  ..  
T Consensus        88 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~--  163 (296)
T 3e5z_A           88 GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT--  163 (296)
T ss_dssp             TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC--
T ss_pred             CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CC--
Confidence            778999998766654332211 11 1235678999999998887321                 2344444432  22  


Q ss_pred             EEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCc-eeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe
Q 018675          155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW-HCVQTISESNNGHSSTIWALSFNAKGDKLVSCS  233 (352)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~  233 (352)
                       ...+..+......++|+|+++.+++.+.++.|.+|++...  ... .....+ .   .+...+..++++++|+++++. 
T Consensus       164 -~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~--g~~~~~~~~~-~---~~~~~p~~i~~d~~G~l~v~~-  235 (296)
T 3e5z_A          164 -LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNAR--GETEYQGVHF-T---VEPGKTDGLRVDAGGLIWASA-  235 (296)
T ss_dssp             -EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSS--SCEEEEEEEE-C---CSSSCCCSEEEBTTSCEEEEE-
T ss_pred             -EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCC--CcCcCCCeEe-e---CCCCCCCeEEECCCCCEEEEc-
Confidence             2223445556788999999998877777889999987521  111 111112 1   233455678999999987777 


Q ss_pred             CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEe-cCCc-eEEecCCCCeEEE
Q 018675          234 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW-SREG-IIASGAADDSVQF  293 (352)
Q Consensus       234 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~-~~~s~~~d~~v~~  293 (352)
                       ++.|.+|+.+..            ....+. .+.. +.++.+ .+++ .|..++.++..++
T Consensus       236 -~~~v~~~~~~g~------------~~~~~~-~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          236 -GDGVHVLTPDGD------------ELGRVL-TPQT-TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             -TTEEEEECTTSC------------EEEEEE-CSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             -CCeEEEECCCCC------------EEEEEE-CCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence             788999986411            111121 1223 666777 4554 5666655544433

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.47  E-value=1e-10  Score=103.37  Aligned_cols=280  Identities=10%  Similarity=0.053  Sum_probs=162.4

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEee----------CCCeEEEEecCCCceeeeeeeeee-cceecceEEEEE
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCS----------GDKTVRIWEQSASSRFWNCKAVLE-EMHTRTVRSCAW   82 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s----------~D~~v~~w~~~~~~~~~~~~~~~~-~~h~~~v~~~~~   82 (352)
                      +.++..+...  .++|+|+      +++++.+.          .|++|.+||..+.+........-. ..+......++|
T Consensus        44 ~~~i~~g~~p--~i~~spd------g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~  115 (361)
T 2oiz_A           44 LGMVPTAFNG--HVQVSND------GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQ  115 (361)
T ss_dssp             EEEEECCEEE--EEEECTT------SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEE
T ss_pred             EEEecCCCCC--ceEECCC------CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEE
Confidence            4455555555  7899997      46777765          367899999876543322111000 001234567899


Q ss_pred             CCCCCEEEEEeC--CCcEEEEEccCCceeeeEe-eccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeE-EEE
Q 018675           83 SPSGKLLATASF--DATTCIWEDVGGDYECVAT-LEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFE-CVS  157 (352)
Q Consensus        83 s~~~~~l~s~~~--d~~i~i~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~-~~~  157 (352)
                      +|||++|.++..  +++|.+||..+++  .+.. +. .. ....+.+.|++ ..+++.+.|+++.+|++....... ...
T Consensus       116 spdg~~l~v~n~~~~~~v~v~d~~~~~--~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~  191 (361)
T 2oiz_A          116 TTDGKFIVLQNASPATSIGIVDVAKGD--YVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR  191 (361)
T ss_dssp             CTTSSEEEEEEESSSEEEEEEETTTTE--EEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE
T ss_pred             CCCCCEEEEECCCCCCeEEEEECCCCc--EEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc
Confidence            999999988764  5789999987663  3444 33 21 22335567765 678889999999999975422211 111


Q ss_pred             ---EeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccC-----CCC-cccEEEEEEcCCCCE
Q 018675          158 ---VLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN-----NGH-SSTIWALSFNAKGDK  228 (352)
Q Consensus       158 ---~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-----~~h-~~~i~~l~~~~~~~~  228 (352)
                         .+..+... ..+.++|++..++..+.++.+.++++.....   .....+....     .+. ......++|+|++..
T Consensus       192 ~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~  267 (361)
T 2oiz_A          192 SKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEV---KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR  267 (361)
T ss_dssp             CCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSC---EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTE
T ss_pred             ccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCc---eecccccccCccccccccccCCeeEEEEecCCCe
Confidence               11111111 1223356677777777889999998753211   1111111000     000 011112688999777


Q ss_pred             EEEEeC-----------CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEc
Q 018675          229 LVSCSD-----------DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE  296 (352)
Q Consensus       229 l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~  296 (352)
                      +.....           .+.|.+||+...           +....+... .  +..+.+++++ ++++++. +.+.+|+.
T Consensus       268 lyv~~~~~~~~~~~~~~~~~v~viD~~t~-----------~~v~~i~~~-~--p~~ia~spdg~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          268 MYVFMHPDGKEGTHKFPAAEIWVMDTKTK-----------QRVARIPGR-D--ALSMTIDQQRNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             EEEEEESSCCTTCTTCCCSEEEEEETTTT-----------EEEEEEECT-T--CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred             EEEEEccCCCcccccCCCceEEEEECCCC-----------cEEEEEecC-C--eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence            665432           347999997532           223333322 2  7888999876 5555555 99999965


Q ss_pred             cCCccccCcccceeeecccccCcceeEEEecCCCc
Q 018675          297 SKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER  331 (352)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~  331 (352)
                      ....+       +++.....+...-..++++|+|+
T Consensus       333 ~t~~l-------~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          333 SQPEP-------KLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SSSSC-------EEEEEETTSCSSEEEEEECCCSC
T ss_pred             CCCcc-------eeeEEeccCCCCcEEEEecCCCC
Confidence            43210       12233335566778899999875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.46  E-value=1e-10  Score=98.71  Aligned_cols=238  Identities=7%  Similarity=-0.039  Sum_probs=152.7

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE
Q 018675           76 TVRSCAWSPSGKLLA-TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE  154 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~-s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  154 (352)
                      ...+++++++|++++ +...++.|.+|+..+....  .....+...+.++++.++++++++.. ++.|.+||..... ..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~-~~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT--VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN-QT  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E--ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC-CE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc--eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce-Ee
Confidence            567889999999777 5467889999975443211  11122335678999999998776665 8899999975332 11


Q ss_pred             EEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC
Q 018675          155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD  234 (352)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~  234 (352)
                        ............+++.|++.++++...++.|.+|+.....     .....    ......+..++++|+|+++++...
T Consensus       101 --~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-----~~~~~----~~~~~~p~~i~~~~~g~l~v~~~~  169 (270)
T 1rwi_B          101 --VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-----QTVLP----FTGLNDPDGVAVDNSGNVYVTDTD  169 (270)
T ss_dssp             --ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-----CEECC----CCSCCSCCCEEECTTCCEEEEEGG
T ss_pred             --eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-----eEeec----cccCCCceeEEEeCCCCEEEEECC
Confidence              1111222467889999999877777778889988532211     11101    112235678999999998888877


Q ss_pred             CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeec
Q 018675          235 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKK  313 (352)
Q Consensus       235 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~  313 (352)
                      ++.|.+|+.+......            ........+..+++++++ .+++...++.+..|+......         ...
T Consensus       170 ~~~i~~~~~~~~~~~~------------~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~---------~~~  228 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVV------------LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---------TVL  228 (270)
T ss_dssp             GTEEEEECTTTCCEEE------------CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC---------EEC
T ss_pred             CCEEEEEecCCCceEe------------ecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc---------eee
Confidence            8899999865321110            000111456778888876 455556677888886533111         111


Q ss_pred             ccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       314 ~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ...+...+.+++++|+++ ++++...++.|++++...
T Consensus       229 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          229 PFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             CCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCG
T ss_pred             ccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCC
Confidence            122335689999999985 888899999999998754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.43  E-value=4.8e-11  Score=104.09  Aligned_cols=244  Identities=9%  Similarity=0.044  Sum_probs=154.5

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE  154 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  154 (352)
                      ..|.++.|++++..++..+.++.++.|.   +  .....+..+...+.+++|++++++++++..++.|.+||...+... 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~-   79 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---A--EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-   79 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C--EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-
T ss_pred             cccceeeecCCccceeEEeecccCcccc---c--ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-
Confidence            3467778888887777777788888883   1  234455566677899999999998888888999999997654321 


Q ss_pred             EEEEeecCccCeeEEEEcCCCCEEEEEeCC----CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE
Q 018675          155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYD----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV  230 (352)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  230 (352)
                        .....+...+.++.++|++.++++...+    +.|.+|+.....   ..  ..+..  ..+...+..+.++|+|++++
T Consensus        80 --~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~---~~--~~~~~--~~~~~~~~~i~~d~~g~l~v  150 (333)
T 2dg1_A           80 --RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN---LQ--DIIED--LSTAYCIDDMVFDSKGGFYF  150 (333)
T ss_dssp             --EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS---CE--EEECS--SSSCCCEEEEEECTTSCEEE
T ss_pred             --EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE---EE--EEEcc--CccCCcccceEECCCCCEEE
Confidence              2222455678999999999887777666    688888754321   11  01111  12345789999999999888


Q ss_pred             EEeC------CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCC-cc
Q 018675          231 SCSD------DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKD-DL  301 (352)
Q Consensus       231 s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~-~~  301 (352)
                      +...      .+.|..++.+....         ...   .. ....+..+.+++++  ++++...++.+.+|+.... ..
T Consensus       151 ~~~~~~~~~~~~~l~~~~~~~~~~---------~~~---~~-~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~  217 (333)
T 2dg1_A          151 TDFRGYSTNPLGGVYYVSPDFRTV---------TPI---IQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT  217 (333)
T ss_dssp             EECCCBTTBCCEEEEEECTTSCCE---------EEE---EE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred             EeccccccCCCceEEEEeCCCCEE---------EEe---ec-CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC
Confidence            7654      24455554321111         111   00 11235678888876  3455556788988876421 11


Q ss_pred             ccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          302 IDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       302 ~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ... ..........++ ..+..+++++++. ++++...++.|.+|+..
T Consensus       218 ~~~-~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          218 IQP-FGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EEE-EEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTT
T ss_pred             ccc-ccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCC
Confidence            100 000111111223 4678899999986 67777778999999864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.42  E-value=2.8e-10  Score=99.66  Aligned_cols=222  Identities=11%  Similarity=0.112  Sum_probs=137.6

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCC---Ce--EEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC-
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGD---KT--VRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD-   95 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D---~~--v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-   95 (352)
                      ..+.++.|+|+      ++.||.++.+   +.  |.+|++.+++.    .... . +.. +..++|+|||+.|+.++.+ 
T Consensus        59 ~~~~~~~~SpD------g~~la~~~~~~~~~~~~l~~~~~~~g~~----~~l~-~-~~~-~~~~~wspdg~~l~~~~~~~  125 (347)
T 2gop_A           59 ENATMPRISPD------GKKIAFMRANEEKKVSEIWVADLETLSS----KKIL-E-AKN-IRSLEWNEDSRKLLIVGFKR  125 (347)
T ss_dssp             ESCEEEEECTT------SSEEEEEEEETTTTEEEEEEEETTTTEE----EEEE-E-ESE-EEEEEECTTSSEEEEEEECC
T ss_pred             ccCCCeEECCC------CCEEEEEEeccCCCcceEEEEECCCCce----EEEE-c-CCC-ccceeECCCCCEEEEEEccC
Confidence            45778999997      5677777654   34  55666665432    1111 1 223 8899999999998887643 


Q ss_pred             --------------------------CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCC-------cE
Q 018675           96 --------------------------ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK-------SV  142 (352)
Q Consensus        96 --------------------------~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-------~v  142 (352)
                                                ..+.+|+..+++.  +..+.. . .+..+.|+|+| +++++..+.       ..
T Consensus       126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~--~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~  200 (347)
T 2gop_A          126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV--IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFW  200 (347)
T ss_dssp             CC---------CCCC---------CEEEEEEEETTTTEE--EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCE
T ss_pred             CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE--EeeecC-C-CcccccCCCCe-EEEEEecccccccccccc
Confidence                                      4577888766643  122222 3 78899999999 777776542       44


Q ss_pred             EEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCC--------cEEEEecCCCCCCCceeEeeeeccCCCCc
Q 018675          143 WIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN--------TIKVWWAEDTDSDNWHCVQTISESNNGHS  214 (352)
Q Consensus       143 ~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--------~i~iw~~~~~~~~~~~~~~~~~~~~~~h~  214 (352)
                      .+|.+. ......   +..+ ..+..  ++|+++.++.++.+.        .|.+|+  ..   .   ...+   ..++.
T Consensus       201 ~l~~~d-~~~~~~---l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---~---~~~l---~~~~~  262 (347)
T 2gop_A          201 DIYIWE-DGKEEK---MFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GK---E---VMGI---LDEVD  262 (347)
T ss_dssp             EEEEEE-TTEEEE---EEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SS---C---EEES---STTCC
T ss_pred             cEEEeC-CCceEE---eccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CC---c---eEec---cccCC
Confidence            566554 333222   2223 33443  389999887776543        566665  11   1   1112   22455


Q ss_pred             ccEEE-EEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeE-E
Q 018675          215 STIWA-LSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSV-Q  292 (352)
Q Consensus       215 ~~i~~-l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v-~  292 (352)
                      ..+.. +.|+ ++ ++++++.++.+++| ++ ..          .. ..+.. ....+..+++++ .++++++.++.. .
T Consensus       263 ~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~g----------~~-~~~~~-~~~~v~~~~~s~-~~~~~~~~~~~~~~  325 (347)
T 2gop_A          263 RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-DG----------EI-KPIAK-GRHWIMGFDVDE-IVVYLKETATRLRE  325 (347)
T ss_dssp             SEEEEEEEET-TE-EEEEEEETTEEEEE-EE-SS----------SE-EEEEC-SSSEEEEEEESS-SEEEEEECSSSCCE
T ss_pred             cccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-CC----------ce-EEEec-CCCeEEeeeeeC-cEEEEEcCCCChHH
Confidence            67776 8999 88 88899999999999 75 11          01 11111 245678888988 777777666654 6


Q ss_pred             EEEc
Q 018675          293 FFVE  296 (352)
Q Consensus       293 ~~~~  296 (352)
                      +|..
T Consensus       326 l~~~  329 (347)
T 2gop_A          326 LFTW  329 (347)
T ss_dssp             EEEE
T ss_pred             heEe
Confidence            6643

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.40  E-value=1.3e-09  Score=93.87  Aligned_cols=210  Identities=9%  Similarity=0.071  Sum_probs=127.6

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEE-------eeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC-CCE
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFAS-------CSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS-GKL   88 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s-------~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~   88 (352)
                      +.+......+++|.|+      +.++++       ...++.|.+|+..+++.. .....-...+...+..++++++ |++
T Consensus        13 ~~~~~~~~~~~~~~~~------g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l   85 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKN------GDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQL   85 (314)
T ss_dssp             EECCCTTCEEEEECTT------SCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEE
T ss_pred             hhccCCCccCceECCC------CCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcE
Confidence            3444556788999875      456777       677899999997655321 1100000113457889999999 776


Q ss_pred             EEEEeCCCcEEEEEccCCceeee-Eee-cc-ccCCeeEEEECCCCcEEEEeeCC---------------CcEEEEecCCC
Q 018675           89 LATASFDATTCIWEDVGGDYECV-ATL-EG-HENEVKSVSWNASGTLLATCGRD---------------KSVWIWEVMPG  150 (352)
Q Consensus        89 l~s~~~d~~i~i~~~~~~~~~~~-~~~-~~-h~~~v~~v~~~~~~~~l~s~~~d---------------~~v~vwd~~~~  150 (352)
                      +++.. .+.+.+|+.. ++.... ... .+ ....+.++++.++++++++...+               +.|..++.. +
T Consensus        86 ~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g  162 (314)
T 1pjx_A           86 FVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G  162 (314)
T ss_dssp             EEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred             EEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence            65544 4478888876 543222 111 11 12358899999999988877655               456666643 2


Q ss_pred             CeeEEEEEeecCccCeeEEEEc----CCCCEEEEE-eCCCcEEEEecCCCCCCCceeEeeeeccCCCCc-ccEEEEEEcC
Q 018675          151 NEFECVSVLQGHAQDVKMVQWH----PTMDVLFSC-SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHS-STIWALSFNA  224 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~l~~~~  224 (352)
                      . ...   +..+......++++    |+++.++.+ ..++.|.+|+....  ........+. ...++. ..+..+++++
T Consensus       163 ~-~~~---~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~--g~~~~~~~~~-~~~~~~~~~p~~i~~d~  235 (314)
T 1pjx_A          163 Q-MIQ---VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP--AKIENKKVWG-HIPGTHEGGADGMDFDE  235 (314)
T ss_dssp             C-EEE---EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET--TEEEEEEEEE-ECCCCSSCEEEEEEEBT
T ss_pred             C-EEE---eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC--CccccceEEE-ECCCCCCCCCCceEECC
Confidence            2 221   12223345788899    988665544 56788999975411  1111111111 112232 4577899999


Q ss_pred             CCCEEEEEeCCCcEEEEcC
Q 018675          225 KGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       225 ~~~~l~s~~~dg~i~iwd~  243 (352)
                      +|.++++...++.|.+|+.
T Consensus       236 ~G~l~v~~~~~~~i~~~d~  254 (314)
T 1pjx_A          236 DNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             TCCEEEEEETTTEEEEECT
T ss_pred             CCCEEEEEcCCCEEEEEcC
Confidence            9998888878888998875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.39  E-value=3.1e-09  Score=99.08  Aligned_cols=286  Identities=12%  Similarity=0.038  Sum_probs=169.4

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccc
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE  118 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~  118 (352)
                      ..++++...|++|.++|..+.+......      ....+..+.|+|||+++.+++.|+.+.+||....+...+..+.. .
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G  239 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLD------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-G  239 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEE------CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-C
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEe------CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-C
Confidence            4577888889999999998875432221      12345688999999999999999999999974112233444443 2


Q ss_pred             CCeeEEEEC----CCCcEEEEee-CCCcEEEEecCCCCeeEEEEEeec-------Ccc-CeeEEEEcCCCCE-EEEEeCC
Q 018675          119 NEVKSVSWN----ASGTLLATCG-RDKSVWIWEVMPGNEFECVSVLQG-------HAQ-DVKMVQWHPTMDV-LFSCSYD  184 (352)
Q Consensus       119 ~~v~~v~~~----~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~-------h~~-~v~~~~~~~~~~~-l~s~~~d  184 (352)
                      .....++|+    |+|++++++. .++++.++|....+..+.+.....       |.. .+..+..++++.. ++....+
T Consensus       240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~  319 (567)
T 1qks_A          240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  319 (567)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence            346789999    6999877665 458999999765554433322110       222 4667777887664 4455567


Q ss_pred             CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEcCCccccccCCCCccceeeEE-
Q 018675          185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQSGDGYASWRHLCT-  262 (352)
Q Consensus       185 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-  262 (352)
                      +.|.+++.....  . .....+.     .......+.|+|++++++++. .++.|.++|++..+....        +.. 
T Consensus       320 g~v~~vd~~~~~--~-~~v~~i~-----~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~--------i~vg  383 (567)
T 1qks_A          320 GKILLVDYTDLN--N-LKTTEIS-----AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI--------EDTG  383 (567)
T ss_dssp             TEEEEEETTCSS--E-EEEEEEE-----CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE--------EECS
T ss_pred             CeEEEEecCCCc--c-ceeeeee-----ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE--------Eecc
Confidence            889888765432  1 1122222     224466789999999876654 678999999864332110        000 


Q ss_pred             eecccCcceEEEEecCC-c-eEEec-CCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecC
Q 018675          263 ISGYHDRTIFSVHWSRE-G-IIASG-AADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD  339 (352)
Q Consensus       263 ~~~~~~~~i~~~~~~~~-~-~~~s~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~  339 (352)
                      -...|...-..+ +.++ + .+++. ..+++|.+++.....-. ...++ .+++.......-.-+..+|++++++++...
T Consensus       384 g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~-~~~~k-vv~~i~~~g~g~~~i~~~p~~~~l~v~~~~  460 (567)
T 1qks_A          384 GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP-DNAWK-ILDSFPALGGGSLFIKTHPNSQYLYVDATL  460 (567)
T ss_dssp             SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT-TTBTS-EEEEEECSCSCCCCEECCTTCSEEEEECTT
T ss_pred             CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc-cccCE-EEEEEecCCCCCEEEEeCCCCCeEEEecCC
Confidence            000121111112 2443 4 33443 35688888865431100 00011 222222222222446789999888876532


Q ss_pred             ------CCeEEEEeecc
Q 018675          340 ------DGMIKIWELAN  350 (352)
Q Consensus       340 ------Dg~i~iw~~~~  350 (352)
                            .+.|.|+|+.+
T Consensus       461 ~~~~~~~~~v~v~d~~~  477 (567)
T 1qks_A          461 NPEAEISGSVAVFDIKA  477 (567)
T ss_dssp             CSSHHHHTCEEEEEGGG
T ss_pred             CCCcccCceEEEEECCc
Confidence                  35899999864

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.39  E-value=4.1e-10  Score=109.18  Aligned_cols=248  Identities=16%  Similarity=0.115  Sum_probs=148.7

Q ss_pred             eecceEEEEECCCCCEEEEEeCC-----CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCc------
Q 018675           73 HTRTVRSCAWSPSGKLLATASFD-----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKS------  141 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d-----~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~------  141 (352)
                      |...+...+|||||++||.++.+     ..|++||..+++.... ..  +...+..++|+|+ +.|+.++.|+.      
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~  236 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAF  236 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE--EEEESCCCEESTT-SEEEEEECCCC------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC--CCceeccEEEECC-CEEEEEEecCccccccc
Confidence            44468889999999999887654     3599999887754221 11  1222357899999 88888877654      


Q ss_pred             --------EEEEecCCCCee-EEEEEeecCccCeeEEEEcCCCCEEEEEeCCC-----cEEEEecCCCCCCCceeEeeee
Q 018675          142 --------VWIWEVMPGNEF-ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN-----TIKVWWAEDTDSDNWHCVQTIS  207 (352)
Q Consensus       142 --------v~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~i~iw~~~~~~~~~~~~~~~~~  207 (352)
                              |.+|++..+... ..+.....+...+..+.|+|++++++..+.++     .|.+|++.......+.   .+.
T Consensus       237 ~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~---~l~  313 (741)
T 1yr2_A          237 QALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT---ALI  313 (741)
T ss_dssp             --CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE---EEE
T ss_pred             ccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE---Eec
Confidence                    888887543321 12222222333578899999999888776543     7888876542100011   222


Q ss_pred             ccCCCCcccEEEEEEcCCCCEEEEEeCC----CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEE
Q 018675          208 ESNNGHSSTIWALSFNAKGDKLVSCSDD----LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIA  283 (352)
Q Consensus       208 ~~~~~h~~~i~~l~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  283 (352)
                      .    +...+... ++|+|+.|+..+.+    +.|.+|+++...       ..|+   .+...+...+..+.+..+.+++
T Consensus       314 ~----~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-------~~~~---~l~~~~~~~l~~~~~~~~~lv~  378 (741)
T 1yr2_A          314 P----DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-------PRFD---TVVPESKDNLESVGIAGNRLFA  378 (741)
T ss_dssp             C----SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-------CEEE---EEECCCSSEEEEEEEEBTEEEE
T ss_pred             C----CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-------cccE---EEecCCCCeEEEEEEECCEEEE
Confidence            1    12222333 34888888777653    458888764210       1122   2222334446667777666788


Q ss_pred             ecCCCCeEEEEEccCCccccCcccceeeeccc-ccCcceeEEEecCCCcceEEEec---CCCeEEEEeecc
Q 018675          284 SGAADDSVQFFVESKDDLIDGPSYKMLLKKEK-AHDMDVNSVQWSPGERRLLASAS---DDGMIKIWELAN  350 (352)
Q Consensus       284 s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~sp~~~~~l~s~~---~Dg~i~iw~~~~  350 (352)
                      +...++..++|.....    +.   . ..... .+.+.+..++++|+++.++++.+   ..++|.+||+..
T Consensus       379 ~~~~dg~~~l~~~~~~----g~---~-~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          379 SYIHDAKSQVLAFDLD----GK---P-AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             EEEETTEEEEEEEETT----SC---E-EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEECCEEEEEEEeCC----CC---c-eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            8888998888755321    11   1 11122 23567899999998875554433   447899998754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.39  E-value=4.2e-08  Score=83.62  Aligned_cols=283  Identities=7%  Similarity=0.001  Sum_probs=177.8

Q ss_pred             cCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCc
Q 018675           18 EGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDAT   97 (352)
Q Consensus        18 ~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   97 (352)
                      ........++.+.++      +.++++...++.|.+|+.. +. +...  .. ......+..++++++|++.++...++.
T Consensus        16 ~~~~~~p~~i~~d~~------g~l~v~~~~~~~v~~~~~~-~~-~~~~--~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~   84 (300)
T 2qc5_A           16 SIPDSGPYGITSSED------GKVWFTQHKANKISSLDQS-GR-IKEF--EV-PTPDAKVMCLIVSSLGDIWFTENGANK   84 (300)
T ss_dssp             SSTTCCEEEEEECTT------SCEEEEETTTTEEEEECTT-SC-EEEE--EC-SSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred             CCCCCCcceeeECCC------CCEEEEcCCCCeEEEECCC-Cc-eEEE--EC-CCCCCcceeEEECCCCCEEEEecCCCe
Confidence            345568889999886      4577776678999999876 32 1111  11 112356889999999998887766788


Q ss_pred             EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCE
Q 018675           98 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV  177 (352)
Q Consensus        98 i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  177 (352)
                      +..++.. +... ...+......+.++++.+++.++++...++.|..+|.. +.. .. ..+......+..+.+.+++.+
T Consensus        85 v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~-~~~~~~~~~~~~i~~d~~g~l  159 (300)
T 2qc5_A           85 IGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-YE-YDLPNKGSYPAFITLGSDNAL  159 (300)
T ss_dssp             EEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-EE-EECSSTTCCEEEEEECTTSSE
T ss_pred             EEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-EE-ccCCCCCCCceeEEECCCCCE
Confidence            9998865 4432 22233234678899999999988877777889999865 332 11 112223456788999999986


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccc
Q 018675          178 LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW  257 (352)
Q Consensus       178 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  257 (352)
                      .++...++.|..++...    ...   .+.  ...+...+..+.++++|.++++....+.|.+|+... ..         
T Consensus       160 ~v~~~~~~~i~~~~~~g----~~~---~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~---------  220 (300)
T 2qc5_A          160 WFTENQNNSIGRITNTG----KLE---EYP--LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-EI---------  220 (300)
T ss_dssp             EEEETTTTEEEEECTTC----CEE---EEE--CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-CE---------
T ss_pred             EEEecCCCeEEEECCCC----cEE---Eee--CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-cE---------
Confidence            66666677888886521    111   111  112345688999999998888777778899997521 11         


Q ss_pred             eeeEEeecccCcceEEEEecCCce-EEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEE
Q 018675          258 RHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLAS  336 (352)
Q Consensus       258 ~~~~~~~~~~~~~i~~~~~~~~~~-~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s  336 (352)
                      .. ... ......+..+..++++. +++...++.+..++... ..      ..  .........+.++++.+++. ++++
T Consensus       221 ~~-~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~------~~--~~~~~~~~~~~~i~~~~~g~-l~v~  288 (300)
T 2qc5_A          221 SE-YDI-PTPNARPHAITAGKNSEIWFTEWGANQIGRITNDN-TI------QE--YQLQTENAEPHGITFGKDGS-VWFA  288 (300)
T ss_dssp             EE-EEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS-CE------EE--EECCSTTCCCCCEEECTTSC-EEEE
T ss_pred             EE-EEC-CCCCCCceEEEECCCCCEEEeccCCCeEEEECCCC-cE------EE--EECCccCCccceeEeCCCCC-EEEE
Confidence            00 001 11234567788887764 44444567888875421 11      01  11122345688999999886 5655


Q ss_pred             ecCCCeEEEEeec
Q 018675          337 ASDDGMIKIWELA  349 (352)
Q Consensus       337 ~~~Dg~i~iw~~~  349 (352)
                      .. . .|..++..
T Consensus       289 ~~-~-~i~~~~p~  299 (300)
T 2qc5_A          289 LK-C-KIGKLNLN  299 (300)
T ss_dssp             CS-S-EEEEEEEC
T ss_pred             cc-C-ceEEeCCC
Confidence            54 4 66666653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.39  E-value=5.9e-12  Score=111.13  Aligned_cols=183  Identities=11%  Similarity=0.025  Sum_probs=125.4

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeee-----eeeeeecceecceEEEEECCCCCEEEEEeCCCc
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWN-----CKAVLEEMHTRTVRSCAWSPSGKLLATASFDAT   97 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~   97 (352)
                      .++.+++++..      .++++|+.| .+++|+.........     ........+.. |+.++|  |++.|+++ .++.
T Consensus        39 ~~nlLais~~~------gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~  107 (388)
T 1xip_A           39 SLQNLDISNSK------SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNA  107 (388)
T ss_dssp             CCBCEEEETTT------TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSE
T ss_pred             cccEEEEcCCC------CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCc
Confidence            58889999874      578888887 555697543220000     01101122456 999999  99999998 8899


Q ss_pred             EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCE
Q 018675           98 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV  177 (352)
Q Consensus        98 i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  177 (352)
                      +++||.....  .......|...+.++.+.+.  .+++++.||+|.+||+..+...   .    +...|++++|+|.+  
T Consensus       108 l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~---~----~~~~Vs~v~WSpkG--  174 (388)
T 1xip_A          108 LYSLDLEELS--EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK---Q----LAQNVTSFDVTNSQ--  174 (388)
T ss_dssp             EEEEESSSTT--CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE---E----EEESEEEEEECSSE--
T ss_pred             EEEEEchhhh--ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc---c----ccCCceEEEEcCCc--
Confidence            9999976543  12234556778888877653  3888999999999999755431   1    34589999999999  


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCceeEeeee-----ccCCCCcccEEEEEEcCCCCEEEEE
Q 018675          178 LFSCSYDNTIKVWWAEDTDSDNWHCVQTIS-----ESNNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       178 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-----~~~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                      ++.|..||.+++|+........   ..++.     ....+|...|.+|.|.+++.++++=
T Consensus       175 ~~vg~~dg~i~~~~~~~~~~~~---k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          175 LAVLLKDRSFQSFAWRNGEMEK---QFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEETTSCEEEEEEETTEEEE---EEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eEEEEcCCcEEEEcCCCccccc---cceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            6789999999999654321000   12221     1112467889999999999988873

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.38  E-value=6.9e-10  Score=93.52  Aligned_cols=235  Identities=12%  Similarity=0.050  Sum_probs=151.2

Q ss_pred             ceEEEEEccCCCCCCCccEEE-EeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFA-SCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW  101 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~-s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~  101 (352)
                      ...++++.|+      +.+++ +.+.++.|.+|+..+....     .....+...+.+++++++|+++++.. ++.|.+|
T Consensus        25 ~p~~i~~~~~------g~l~v~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~   92 (270)
T 1rwi_B           25 SPSGVAVDSA------GNVYVTSEGMYGRVVKLATGSTGTT-----VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTL   92 (270)
T ss_dssp             CEEEEEECTT------CCEEEEECSSSCEEEEECC-----E-----ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEE
T ss_pred             CccceEECCC------CCEEEEccCCCCcEEEecCCCcccc-----eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEE
Confidence            6778999886      45677 5577899999987543211     11111224578899999999776665 8889999


Q ss_pred             EccCCceeeeEeec-cccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEE
Q 018675          102 EDVGGDYECVATLE-GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS  180 (352)
Q Consensus       102 ~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  180 (352)
                      +..+....   .+. .....+..+++.+++.++++...++.|.+|+......   .............++++|++.++++
T Consensus        93 d~~~~~~~---~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g~l~v~  166 (270)
T 1rwi_B           93 AAGSNNQT---VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---TVLPFTGLNDPDGVAVDNSGNVYVT  166 (270)
T ss_dssp             CTTCSCCE---ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC---EECCCCSCCSCCCEEECTTCCEEEE
T ss_pred             eCCCceEe---eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee---EeeccccCCCceeEEEeCCCCEEEE
Confidence            86554321   221 2235688999999999888877788899997532221   1111222335678999999987777


Q ss_pred             EeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceee
Q 018675          181 CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHL  260 (352)
Q Consensus       181 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  260 (352)
                      ...++.|.+|+.....     ... .   ...+...+..|+++++|.++++...++.|.+|+.+.....           
T Consensus       167 ~~~~~~i~~~~~~~~~-----~~~-~---~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-----------  226 (270)
T 1rwi_B          167 DTDNNRVVKLEAESNN-----QVV-L---PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-----------  226 (270)
T ss_dssp             EGGGTEEEEECTTTCC-----EEE-C---CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-----------
T ss_pred             ECCCCEEEEEecCCCc-----eEe-e---cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-----------
Confidence            7778899999754321     111 1   1122356889999999988888878899999986432110           


Q ss_pred             EEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEc
Q 018675          261 CTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE  296 (352)
Q Consensus       261 ~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~  296 (352)
                       .........+..+++++++ .+++...++.|+++..
T Consensus       227 -~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          227 -VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             -ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             -eeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence             0000112356778888765 5667777888888843

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.38  E-value=2.3e-11  Score=108.51  Aligned_cols=235  Identities=8%  Similarity=0.003  Sum_probs=133.7

Q ss_pred             cceEEEEECCCCCEEEEEeCC-C--cEEEEEccCCceeeeEeeccccCC-eeEEEECCCCcEEEEeeCCCcEEEEecCCC
Q 018675           75 RTVRSCAWSPSGKLLATASFD-A--TTCIWEDVGGDYECVATLEGHENE-VKSVSWNASGTLLATCGRDKSVWIWEVMPG  150 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d-~--~i~i~~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~  150 (352)
                      ..+..++|+|||+.|+..... +  .+.+|+..+++..   .+..+... ...+.|+|+|+.|+.++.++.|.+||+..+
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~  112 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV---QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL  112 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE---ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE---EeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence            346778899999998877553 3  5777777665432   22222333 334789999999999999999999998765


Q ss_pred             CeeEEEEEeecCccCeeE-------------------EEEcCCCCEEEEE-----eCCCcEEEEecCCCCCCCceeEeee
Q 018675          151 NEFECVSVLQGHAQDVKM-------------------VQWHPTMDVLFSC-----SYDNTIKVWWAEDTDSDNWHCVQTI  206 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~l~s~-----~~d~~i~iw~~~~~~~~~~~~~~~~  206 (352)
                      ...   .....+......                   ..|+|+++.++.+     ..+..|.+|++....   .   ..+
T Consensus       113 ~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~---~---~~~  183 (396)
T 3c5m_A          113 EEQ---VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE---L---EVI  183 (396)
T ss_dssp             CEE---EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC---E---EEE
T ss_pred             CcE---EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc---E---Eee
Confidence            432   122222211111                   2356666654433     345678888765422   1   111


Q ss_pred             eccCCCCcccEEEEEEcC-CCCEEEEEeCC------CcEEEEcCCccccccCCCCccceeeEEeeccc-CcceEEEEecC
Q 018675          207 SESNNGHSSTIWALSFNA-KGDKLVSCSDD------LTIKIWGADITRMQSGDGYASWRHLCTISGYH-DRTIFSVHWSR  278 (352)
Q Consensus       207 ~~~~~~h~~~i~~l~~~~-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~  278 (352)
                      .    .+...+..+.|+| ++..|+..+.+      ..|.+|+++.....            .+.... ...+..+.|++
T Consensus       184 ~----~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~------------~l~~~~~~~~~~~~~~sp  247 (396)
T 3c5m_A          184 H----QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR------------KIKEHAEGESCTHEFWIP  247 (396)
T ss_dssp             E----EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE------------ESSCCCTTEEEEEEEECT
T ss_pred             c----cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee------------EeeccCCCccccceEECC
Confidence            1    2345688899999 78877765543      35777765422110            011101 22466778998


Q ss_pred             Cc-eEEecCCC-----CeEEEEEccCCccccCcccceeeecccccCcceeEEEecC-CCcceEEEec-------------
Q 018675          279 EG-IIASGAAD-----DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASAS-------------  338 (352)
Q Consensus       279 ~~-~~~s~~~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~~l~s~~-------------  338 (352)
                      ++ .++..+.+     +.+++|+......      .. +....+    .. ++|+| +++ +++.++             
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~------~~-l~~~~~----~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          248 DGSAMAYVSYFKGQTDRVIYKANPETLEN------EE-VMVMPP----CS-HLMSNFDGS-LMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             TSSCEEEEEEETTTCCEEEEEECTTTCCE------EE-EEECCS----EE-EEEECSSSS-EEEEEECCC----------
T ss_pred             CCCEEEEEecCCCCccceEEEEECCCCCe------EE-eeeCCC----CC-CCccCCCCc-eEEEecCCcceeecccccc
Confidence            76 34444332     3477775432111      11 111111    23 88999 987 455443             


Q ss_pred             ---CCCeEEEEeecc
Q 018675          339 ---DDGMIKIWELAN  350 (352)
Q Consensus       339 ---~Dg~i~iw~~~~  350 (352)
                         .+..|.+|++..
T Consensus       315 ~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          315 NIENDPFLYVLNTKA  329 (396)
T ss_dssp             CCCCCCEEEEEETTT
T ss_pred             ccCCCCcEEEEeccc
Confidence               347899998754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.34  E-value=7.5e-09  Score=88.75  Aligned_cols=207  Identities=12%  Similarity=0.140  Sum_probs=130.1

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcE
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATT   98 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   98 (352)
                      .+..---+..|+|++     +.++++...++.|..|+..++...     .+  .....+.+++++++|+++++ . ++.+
T Consensus        10 ~~~~~~Egp~w~~~~-----~~l~~~d~~~~~i~~~d~~~~~~~-----~~--~~~~~~~~i~~~~dG~l~v~-~-~~~l   75 (297)
T 3g4e_A           10 ENCRCGESPVWEEVS-----NSLLFVDIPAKKVCRWDSFTKQVQ-----RV--TMDAPVSSVALRQSGGYVAT-I-GTKF   75 (297)
T ss_dssp             CCCSBEEEEEEETTT-----TEEEEEETTTTEEEEEETTTCCEE-----EE--ECSSCEEEEEEBTTSSEEEE-E-TTEE
T ss_pred             cCCccccCCeEECCC-----CEEEEEECCCCEEEEEECCCCcEE-----EE--eCCCceEEEEECCCCCEEEE-E-CCeE
Confidence            344455588999864     357777778899999998765321     11  13457899999999996554 3 5678


Q ss_pred             EEEEccCCceeeeEeecc--ccCCeeEEEECCCCcEEEEeeCC---------CcEEEEecCCCCeeEEEEEeecCccCee
Q 018675           99 CIWEDVGGDYECVATLEG--HENEVKSVSWNASGTLLATCGRD---------KSVWIWEVMPGNEFECVSVLQGHAQDVK  167 (352)
Q Consensus        99 ~i~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d---------~~v~vwd~~~~~~~~~~~~~~~h~~~v~  167 (352)
                      .+||..++....+.....  ....++.+.+.|+|.++++...+         ..-.+|.+........   +..+.....
T Consensus        76 ~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~~~~~~pn  152 (297)
T 3g4e_A           76 CALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---YFDQVDISN  152 (297)
T ss_dssp             EEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---EEEEESBEE
T ss_pred             EEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---Eeecccccc
Confidence            899877765544433221  12357889999999977655322         2345666543332222   122233457


Q ss_pred             EEEEcCCCCEEE-EEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          168 MVQWHPTMDVLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       168 ~~~~~~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      .++|+|+++.++ +.+.++.|..|+...... .......+. ....+......++++++|.+.++...++.|.+||.+
T Consensus       153 gi~~spdg~~lyv~~~~~~~i~~~~~d~~~G-~~~~~~~~~-~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          153 GLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG-QISNRRSVY-KLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             EEEECTTSCEEEEEEGGGTEEEEEEECTTTC-CEEEEEEEE-ECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred             ceEEcCCCCEEEEecCCCCcEEEEeccCCCC-cccCcEEEE-ECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence            899999998664 555678899997631111 111111111 111223457789999999988888888889999764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.33  E-value=3.5e-09  Score=92.22  Aligned_cols=264  Identities=7%  Similarity=-0.038  Sum_probs=157.0

Q ss_pred             CCCeEEEEecCCCceeeeeeeee-ecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEE
Q 018675           47 GDKTVRIWEQSASSRFWNCKAVL-EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS  125 (352)
Q Consensus        47 ~D~~v~~w~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~  125 (352)
                      .+++|.+||..+++......... ..........+.+. ++++.++...++.+.++|..+++.  +..+. .......++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~--~~~i~-~~~~p~~i~   90 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE--VGRIT-GFTSPRYIH   90 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE--EEEEE-CCSSEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE--EEEcC-CCCCCcEEE
Confidence            38999999998764211100000 00111335667764 456666666789999999877643  33443 345688999


Q ss_pred             ECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCc-----cCeeEEEEcCCCCEEEEEe--CCCcEEEEecCCCCCC
Q 018675          126 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA-----QDVKMVQWHPTMDVLFSCS--YDNTIKVWWAEDTDSD  198 (352)
Q Consensus       126 ~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~~--~d~~i~iw~~~~~~~~  198 (352)
                      +++++.++++...++.|.+||......   ...+....     .....+.+ . +..++.+.  .++.|.++|....   
T Consensus        91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~---~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~---  162 (328)
T 3dsm_A           91 FLSDEKAYVTQIWDYRIFIINPKTYEI---TGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETD---  162 (328)
T ss_dssp             EEETTEEEEEEBSCSEEEEEETTTTEE---EEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTT---
T ss_pred             EeCCCeEEEEECCCCeEEEEECCCCeE---EEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCC---
Confidence            988886555555889999999865432   22222111     13345566 3 44455544  4889999976542   


Q ss_pred             CceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC----------CcEEEEcCCccccccCCCCccceeeEEeecccC
Q 018675          199 NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD----------LTIKIWGADITRMQSGDGYASWRHLCTISGYHD  268 (352)
Q Consensus       199 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (352)
                        ....++..     ......+.++|+|++++++..+          +.|.++|....+.           ...+.....
T Consensus       163 --~~~~~i~~-----g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v-----------~~~~~~~~g  224 (328)
T 3dsm_A          163 --KVVDELTI-----GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV-----------EKQFKFKLG  224 (328)
T ss_dssp             --EEEEEEEC-----SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE-----------EEEEECCTT
T ss_pred             --eEEEEEEc-----CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE-----------EEEEecCCC
Confidence              22333321     1234568899999988877654          7899998653221           111111112


Q ss_pred             cceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEe----cCCCeE
Q 018675          269 RTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASA----SDDGMI  343 (352)
Q Consensus       269 ~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~----~~Dg~i  343 (352)
                      ..+..+++++++ .+..+..  .+.+++.....+..    ...   ...+......++++|++..++++.    ..++.|
T Consensus       225 ~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~----~~~---~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V  295 (328)
T 3dsm_A          225 DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV----RPF---LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV  295 (328)
T ss_dssp             CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS----SCS---BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred             CCceeEEEecCCCEEEEEcc--EEEEEECCCCceee----eee---ecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence            357788888754 4444333  77777664332211    000   111245688999999666788887    778999


Q ss_pred             EEEeec
Q 018675          344 KIWELA  349 (352)
Q Consensus       344 ~iw~~~  349 (352)
                      .+|+..
T Consensus       296 ~v~d~~  301 (328)
T 3dsm_A          296 YRYSPQ  301 (328)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            999875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.32  E-value=3.9e-08  Score=83.75  Aligned_cols=238  Identities=10%  Similarity=0.019  Sum_probs=156.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE  154 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  154 (352)
                      ..+.+++++++|++.++...++.+.+|+.. +.... .....+...+.++++.+++.++++...++.|..|+.. +. ..
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~   90 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI-IK   90 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EE
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-EE
Confidence            468899999999988876667899999866 44322 2222345678999999999988887778889999864 22 22


Q ss_pred             EEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC
Q 018675          155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD  234 (352)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~  234 (352)
                      .. .+......+..+.+.|++.++++...++.|..|+. ..   ...   ...  .......+..+++++++.++++...
T Consensus        91 ~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g---~~~---~~~--~~~~~~~~~~i~~~~~g~l~v~~~~  160 (299)
T 2z2n_A           91 EY-TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG---KIR---EYE--LPNKGSYPSFITLGSDNALWFTENQ  160 (299)
T ss_dssp             EE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC---CEE---EEE--CSSTTCCEEEEEECTTSCEEEEETT
T ss_pred             EE-eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CC---CEE---Eec--CCCCCCCCceEEEcCCCCEEEEeCC
Confidence            11 12223456788999999988777777888998865 21   111   111  1123456889999999998888777


Q ss_pred             CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeec
Q 018675          235 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKK  313 (352)
Q Consensus       235 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~  313 (352)
                      ++.|..||.. .+..         .. .. ......+..+.+++++ .+++...++.+..++. ....      ...  .
T Consensus       161 ~~~i~~~~~~-g~~~---------~~-~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~------~~~--~  219 (299)
T 2z2n_A          161 NNAIGRITES-GDIT---------EF-KI-PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI------TEF--K  219 (299)
T ss_dssp             TTEEEEECTT-CCEE---------EE-EC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE------EEE--E
T ss_pred             CCEEEEEcCC-CcEE---------Ee-eC-CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE------EEE--E
Confidence            8899999762 1110         00 00 1123346678888766 4555555778888855 2111      011  1


Q ss_pred             ccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       314 ~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      ...+...+.+++++|++. ++++...++.|.+|+.
T Consensus       220 ~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          220 IPTPNARPHAITAGAGID-LWFTEWGANKIGRLTS  253 (299)
T ss_dssp             CSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEET
T ss_pred             CCCCCCCceeEEECCCCC-EEEeccCCceEEEECC
Confidence            223456789999999886 6777667888988886

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.32  E-value=6.7e-08  Score=90.12  Aligned_cols=301  Identities=9%  Similarity=0.050  Sum_probs=174.5

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecC--CCceeeeeeeeeecceecceEEEEEC----CCCCEEEEEeC-C
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQS--ASSRFWNCKAVLEEMHTRTVRSCAWS----PSGKLLATASF-D   95 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~--~~~~~~~~~~~~~~~h~~~v~~~~~s----~~~~~l~s~~~-d   95 (352)
                      .+.++.|+|+      ++++++++.|+.|.+||+.  +.+...    .+..  ......++|+    |||++++++.. +
T Consensus       198 ~p~~v~~SpD------Gr~lyv~~~dg~V~viD~~~~t~~~v~----~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~  265 (567)
T 1qks_A          198 AVHISRLSAS------GRYLFVIGRDGKVNMIDLWMKEPTTVA----EIKI--GSEARSIETSKMEGWEDKYAIAGAYWP  265 (567)
T ss_dssp             CEEEEEECTT------SCEEEEEETTSEEEEEETTSSSCCEEE----EEEC--CSEEEEEEECCSTTCTTTEEEEEEEET
T ss_pred             CccceEECCC------CCEEEEEcCCCeEEEEECCCCCCcEeE----EEec--CCCCceeEEccccCCCCCEEEEEEccC
Confidence            5668999997      5788888999999999985  443221    1211  1235788999    69998877665 5


Q ss_pred             CcEEEEEccCCceeeeEeec--c--------ccC-CeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeEEEEEeecCc
Q 018675           96 ATTCIWEDVGGDYECVATLE--G--------HEN-EVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHA  163 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~--~--------h~~-~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~  163 (352)
                      +++.++|..+.+  .+..+.  +        |.. .+..+..++++. ++++...++.|.++|........ +..+. ..
T Consensus       266 ~~v~ViD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~-v~~i~-~~  341 (567)
T 1qks_A          266 PQYVIMDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-TTEIS-AE  341 (567)
T ss_dssp             TEEEEEETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-EEEEE-CC
T ss_pred             CeEEEEECCCCc--EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce-eeeee-cc
Confidence            899999866543  333322  1        222 577888888755 45666677999999976544332 22222 22


Q ss_pred             cCeeEEEEcCCCCEEEEEe-CCCcEEEEecCCCCCCCceeEeeeec-cCCCCcccEEEEEEcCC-CCEEEEEe-CCCcEE
Q 018675          164 QDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISE-SNNGHSSTIWALSFNAK-GDKLVSCS-DDLTIK  239 (352)
Q Consensus       164 ~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~l~~~~~-~~~l~s~~-~dg~i~  239 (352)
                      .....+.|+|++++++++. .++.|.++|....     +....+.. ....|...-..+ ++|+ +..++++. .++.|.
T Consensus       342 ~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-----kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vs  415 (567)
T 1qks_A          342 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-----KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVA  415 (567)
T ss_dssp             SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-----EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEE
T ss_pred             ccccCceECCCCCEEEEEeCCCCeEEEEECCCC-----cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEE
Confidence            3456788999999877665 5788999987542     22333332 223343222122 5787 44455553 468999


Q ss_pred             EEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eE-EecC-C-----CCeEEEEEccCCccccCcccceee
Q 018675          240 IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II-ASGA-A-----DDSVQFFVESKDDLIDGPSYKMLL  311 (352)
Q Consensus       240 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~-~s~~-~-----d~~v~~~~~~~~~~~~~~~~~~~~  311 (352)
                      ++|.+..+-    ....|+....+... ...-..+..+|++ .+ +... .     .++|.+++.....+-........+
T Consensus       416 vid~~~~~~----~~~~~kvv~~i~~~-g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~  490 (567)
T 1qks_A          416 LIGTDPEGH----PDNAWKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTL  490 (567)
T ss_dssp             EEECCTTTC----TTTBTSEEEEEECS-CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEE
T ss_pred             EecCCCCCC----ccccCEEEEEEecC-CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEe
Confidence            998753110    01124444443321 1111223445654 33 3221 1     357888876432000000000111


Q ss_pred             e--c---ccccCcceeEEEecCCCcceEEEec----CCCeEEEEeecc
Q 018675          312 K--K---EKAHDMDVNSVQWSPGERRLLASAS----DDGMIKIWELAN  350 (352)
Q Consensus       312 ~--~---~~~h~~~i~~~~~sp~~~~~l~s~~----~Dg~i~iw~~~~  350 (352)
                      .  +   ...-...+..+.|+|+|+.+++|..    .++.|.|+|..+
T Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t  538 (567)
T 1qks_A          491 PIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT  538 (567)
T ss_dssp             CHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             ccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence            1  0   1112357899999999998888843    378999998754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.29  E-value=1.3e-08  Score=86.24  Aligned_cols=221  Identities=12%  Similarity=0.045  Sum_probs=134.2

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCceeeeEeecccc-CCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecC-
Q 018675           85 SGKLLATASFDATTCIWEDVGGDYECVATLEGHE-NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH-  162 (352)
Q Consensus        85 ~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h-  162 (352)
                      .+++|++++.|+.|.+||..+++.  +..+..+. ..+.++.+.|+|++++  +.++.|..||. .++   .+..+..+ 
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~--~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~---~~W~~~~~~   75 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEI--VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR---ELWNIAAPA   75 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEE--EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC---EEEEEECCT
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeE--EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC---EEEEEcCCC
Confidence            467899999999999999877753  44444444 4688999999999888  45678999997 454   33444443 


Q ss_pred             ccCeeEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          163 AQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       163 ~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iw  241 (352)
                      ...+.++.+.|++..+++.+. ++.+..++....  ..+.  ..+.....++......+.+.++|+++++...++.|..|
T Consensus        76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk--~l~~--~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~  151 (276)
T 3no2_A           76 GCEMQTARILPDGNALVAWCGHPSTILEVNMKGE--VLSK--TEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI  151 (276)
T ss_dssp             TCEEEEEEECTTSCEEEEEESTTEEEEEECTTSC--EEEE--EEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred             CccccccEECCCCCEEEEecCCCCEEEEEeCCCC--EEEE--EeccCCCCcccccccCceECCCCCEEEEecCCCEEEEE
Confidence            245778889999999998887 666666643211  0011  11111111222344456788999999999999999999


Q ss_pred             cCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeee-cccc-cC
Q 018675          242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLK-KEKA-HD  318 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~-~~~~-h~  318 (352)
                      |.+ .+.       .|+    +..  ...+++....+++ +++++..++.+..++.....+.     ..+-. ...+ .-
T Consensus       152 d~~-G~~-------~w~----~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~-----w~~~~~~~~~~~l  212 (276)
T 3no2_A          152 APN-GQL-------LNS----VKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV-----RRVNANDIEGVQL  212 (276)
T ss_dssp             CTT-SCE-------EEE----EEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE-----EEEEGGGSBSCCC
T ss_pred             CCC-CCE-------EEE----EEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE-----EEecCCCCCCccc
Confidence            865 221       122    111  1223444555554 6777777777877765422211     11100 0011 12


Q ss_pred             cceeEEEecCCCcceEEEe
Q 018675          319 MDVNSVQWSPGERRLLASA  337 (352)
Q Consensus       319 ~~i~~~~~sp~~~~~l~s~  337 (352)
                      ..+..++..+++. ++++.
T Consensus       213 ~~~~~~~~~~~G~-i~v~~  230 (276)
T 3no2_A          213 FFVAQLFPLQNGG-LYICN  230 (276)
T ss_dssp             SEEEEEEECTTSC-EEEEE
T ss_pred             cccccceEcCCCC-EEEEe
Confidence            3467777777775 45544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.26  E-value=3.5e-09  Score=102.62  Aligned_cols=246  Identities=12%  Similarity=0.029  Sum_probs=144.3

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCC-----CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGD-----KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D-----~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      +|...+.+++|+|+      ++.+|.++.+     .+|++|++.+++....   .   .+...+..++|+|| +.|+.++
T Consensus       160 ~~~~~~~~~~~SPD------G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~---~---~~~~~~~~~~wspD-~~l~~~~  226 (741)
T 1yr2_A          160 DGATALDAWAASDD------GRLLAYSVQDGGSDWRTVKFVGVADGKPLAD---E---LKWVKFSGLAWLGN-DALLYSR  226 (741)
T ss_dssp             ---EEEEEEEECTT------SSEEEEEEEETTCSEEEEEEEETTTCCEEEE---E---EEEEESCCCEESTT-SEEEEEE
T ss_pred             CCCEEEEeEEECCC------CCEEEEEEcCCCCceEEEEEEECCCCCCCCc---c---CCCceeccEEEECC-CEEEEEE
Confidence            45557889999997      5677776544     4699999988753211   1   12222357899999 9999888


Q ss_pred             CCCc--------------EEEEEccCCce--eeeEeeccccCCeeEEEECCCCcEEEEeeCCC-----cEEEEecCCCCe
Q 018675           94 FDAT--------------TCIWEDVGGDY--ECVATLEGHENEVKSVSWNASGTLLATCGRDK-----SVWIWEVMPGNE  152 (352)
Q Consensus        94 ~d~~--------------i~i~~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----~v~vwd~~~~~~  152 (352)
                      .|+.              |.+|+..++..  ..+.....+...+..+.|+|+|++|+..+.++     .|.+||+..+..
T Consensus       227 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~  306 (741)
T 1yr2_A          227 FAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI  306 (741)
T ss_dssp             CCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE
T ss_pred             ecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC
Confidence            7654              77787655432  12222233334588999999999888776543     899999865411


Q ss_pred             eEEEEEeecCccCeeEEEEcCCCCEEEEEeCC----CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE
Q 018675          153 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK  228 (352)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~  228 (352)
                       .+...+..+....... ++|++..|+..+.+    +.|.+|++.... ..+.   .+.   ..+...+..+.++ ++.+
T Consensus       307 -~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~---~l~---~~~~~~l~~~~~~-~~~l  376 (741)
T 1yr2_A          307 -GPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFD---TVV---PESKDNLESVGIA-GNRL  376 (741)
T ss_dssp             -CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEE---EEE---CCCSSEEEEEEEE-BTEE
T ss_pred             -cccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccE---EEe---cCCCCeEEEEEEE-CCEE
Confidence             1012233344444433 34888888777654    348888765422 1222   221   1233456677877 5567


Q ss_pred             EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEE----ecCCCCeEEEEEcc
Q 018675          229 LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIA----SGAADDSVQFFVES  297 (352)
Q Consensus       229 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~----s~~~d~~v~~~~~~  297 (352)
                      +++...|+..++|..+...          .....+.......+..+.+++++ .++    +....++++.|+..
T Consensus       377 v~~~~~dg~~~l~~~~~~g----------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          377 FASYIHDAKSQVLAFDLDG----------KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA  440 (741)
T ss_dssp             EEEEEETTEEEEEEEETTS----------CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred             EEEEEECCEEEEEEEeCCC----------CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence            7888899988888553210          01111111123446667777654 233    33445677787654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.25  E-value=2.2e-09  Score=91.07  Aligned_cols=184  Identities=13%  Similarity=0.184  Sum_probs=129.2

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeeccee-cceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccc
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT-RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGH  117 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h  117 (352)
                      ++.+++++.|+.|.+||.++++..|+...     +. ..+.+++++|+|++++  +.++.+..||. +++  .+..+..+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~--~~W~~~~~   74 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPL-----EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR--ELWNIAAP   74 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEEC-----CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC--EEEEEECC
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCC-----CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC--EEEEEcCC
Confidence            47899999999999999988887776542     22 3578899999999988  45788999987 554  23344433


Q ss_pred             -cCCeeEEEECCCCcEEEEeeC-CCcEEEEecCCCCeeEEEEEe---ecCccCeeEEEEcCCCCEEEEEeCCCcEEEEec
Q 018675          118 -ENEVKSVSWNASGTLLATCGR-DKSVWIWEVMPGNEFECVSVL---QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA  192 (352)
Q Consensus       118 -~~~v~~v~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~  192 (352)
                       ...+.++.+.++|+.+++.+. ++.+..+|. .++.......-   ..+......++..+++.++++...++.|..|+.
T Consensus        75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~  153 (276)
T 3no2_A           75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP  153 (276)
T ss_dssp             TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC
Confidence             346888999999999999887 777777764 34332221110   112223455678899999999999999999975


Q ss_pred             CCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      .. .     .+.++..     ...+.++...++++++++++.+++|..+|.+
T Consensus       154 ~G-~-----~~w~~~~-----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          154 NG-Q-----LLNSVKL-----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             TS-C-----EEEEEEC-----SSCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             CC-C-----EEEEEEC-----CCCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence            42 1     1222221     1234567778999999999988899999865

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.23  E-value=1.4e-09  Score=104.64  Aligned_cols=247  Identities=11%  Similarity=0.007  Sum_probs=151.8

Q ss_pred             ceecceEEEEECCCCCEEEE-----EeCCCcEEEEEccCCceeeeEeeccccCCe--eEEEECCCCcEEEEeeCCCc---
Q 018675           72 MHTRTVRSCAWSPSGKLLAT-----ASFDATTCIWEDVGGDYECVATLEGHENEV--KSVSWNASGTLLATCGRDKS---  141 (352)
Q Consensus        72 ~h~~~v~~~~~s~~~~~l~s-----~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v--~~v~~~~~~~~l~s~~~d~~---  141 (352)
                      .|...+..++|||||++||.     |+.+..|++||..+++...    ..+...+  ..++|+|+|+.|+.++.|..   
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~----~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~  193 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK----VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSI  193 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS----SCCBSCCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC----CcccCcccccceEEecCCCEEEEEEecCCCCC
Confidence            35557899999999999983     4445689999988775320    1122222  67999999999999988876   


Q ss_pred             ----------EEEEecCCCCee-EEEEEeecCccCeeEEEEcCCCCEEEEEeCCC----cEEEEecCCCCCCCceeEeee
Q 018675          142 ----------VWIWEVMPGNEF-ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN----TIKVWWAEDTDSDNWHCVQTI  206 (352)
Q Consensus       142 ----------v~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~----~i~iw~~~~~~~~~~~~~~~~  206 (352)
                                |++|++..+... ..+.....|...+..+.|+|++++++..+.++    .|.+++..   ...+..   +
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~---~~~~~~---l  267 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG---EKDFRL---L  267 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT---CSSCEE---E
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC---CCceEE---e
Confidence                      999998654321 23333334555678999999999888776655    45555321   112222   2


Q ss_pred             eccCCCCcccEEEEEEcCCCCEEEEEe---CCCcEEEEcCCccccccCCCCccceeeEEeeccc-CcceEEEEecCCceE
Q 018675          207 SESNNGHSSTIWALSFNAKGDKLVSCS---DDLTIKIWGADITRMQSGDGYASWRHLCTISGYH-DRTIFSVHWSREGII  282 (352)
Q Consensus       207 ~~~~~~h~~~i~~l~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~  282 (352)
                      ..    +...+....+ ++|.++++..   .++.|.+||++....      ..|..   +...+ ...+..+.++.+.++
T Consensus       268 ~~----~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~------~~~~~---l~~~~~~~~l~~~~~~~~~lv  333 (695)
T 2bkl_A          268 VK----GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPAR------ASWKE---IVPEDSSASLLSVSIVGGHLS  333 (695)
T ss_dssp             EE----CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSG------GGCEE---EECCCSSCEEEEEEEETTEEE
T ss_pred             ec----CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCc------cCCeE---EecCCCCCeEEEEEEECCEEE
Confidence            11    2223344445 5665544444   257899998753211      11221   12222 344666777766678


Q ss_pred             EecCCCCeEEEEEccCCccccCcccceeeeccccc-CcceeEEEecCCCcceEEEec---CCCeEEEEeecc
Q 018675          283 ASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH-DMDVNSVQWSPGERRLLASAS---DDGMIKIWELAN  350 (352)
Q Consensus       283 ~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~sp~~~~~l~s~~---~Dg~i~iw~~~~  350 (352)
                      ++...|+..++|.....    +.    .......+ .+.|..++++|++..++++.+   ..++|.+||+..
T Consensus       334 ~~~~~dg~~~l~~~~~~----g~----~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          334 LEYLKDATSEVRVATLK----GK----PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             EEEEETTEEEEEEEETT----CC----EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEEECCEEEEEEEeCC----CC----eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            88888998888865321    11    11112223 567888999998876554443   347799999754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.23  E-value=3.5e-08  Score=88.55  Aligned_cols=257  Identities=9%  Similarity=-0.019  Sum_probs=151.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCC--cEEEEecCCCCee
Q 018675           76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK--SVWIWEVMPGNEF  153 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~v~vwd~~~~~~~  153 (352)
                      ....++|+++++++++...++.|+.|+..++....+.  .. ..... ++|+++++.|+.+..++  .|.+++.......
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~--~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH--PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE--ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee--cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            5678999999998888888899999998766433222  22 22334 89999999888888766  7888886543321


Q ss_pred             EEEEEeec-CccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCccc--EEEEEEcCC-CCEE
Q 018675          154 ECVSVLQG-HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSST--IWALSFNAK-GDKL  229 (352)
Q Consensus       154 ~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~l~~~~~-~~~l  229 (352)
                      ..+..+.. ......+++++|++..|+.+..++.|..|+.....   ........  ..++...  ...++|+|+ +.++
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~---~~~~~~~~--~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE---VTLIKQLE--LSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC---EEEEEECC--CCSCCCCSSCCEEEEETTTTEEE
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC---EEEEeccc--ccCCCCCCccccEEEeCCCCEEE
Confidence            22211112 33556788999955555667778889999765332   11111110  1111111  128999995 6667


Q ss_pred             EEEeCCCcEEEEcCCcccc--ccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecC-CCCeEEEEEccCCccccCc
Q 018675          230 VSCSDDLTIKIWGADITRM--QSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGA-ADDSVQFFVESKDDLIDGP  305 (352)
Q Consensus       230 ~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~-~d~~v~~~~~~~~~~~~~~  305 (352)
                      ++-..+++|+.|+.+....  ........+.. .......-.....+++++++ ++++-. .++.|+.|+.....+.   
T Consensus       283 v~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~d-g~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~---  358 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGECEWFCGSATQKTVQD-GLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS---  358 (409)
T ss_dssp             EEETTTTEEEEECTTCCEEEEEECTTCCSCBC-EEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE---
T ss_pred             EEeCCCCEEEEEecCCCEEEEEeCCCCCCcCC-CcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE---
Confidence            7777788999998652100  00000000000 00000011346778888876 556666 6788888863221110   


Q ss_pred             ccceeeec-----------ccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          306 SYKMLLKK-----------EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       306 ~~~~~~~~-----------~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                         .+...           ....-.....++++|++ .++++-..++.|+.++++
T Consensus       359 ---~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          359 ---TVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             ---EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEEEEEC
T ss_pred             ---EEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEEEEeC
Confidence               00000           00112457899999986 588888889999988764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.21  E-value=1.3e-08  Score=98.23  Aligned_cols=242  Identities=8%  Similarity=0.039  Sum_probs=132.2

Q ss_pred             CCCCEEEEEeCCC-c--EEEEEcc--CCceeeeEee----ccccCCeeEEEECCCCcEEEEeeCCC-----cEEEEecCC
Q 018675           84 PSGKLLATASFDA-T--TCIWEDV--GGDYECVATL----EGHENEVKSVSWNASGTLLATCGRDK-----SVWIWEVMP  149 (352)
Q Consensus        84 ~~~~~l~s~~~d~-~--i~i~~~~--~~~~~~~~~~----~~h~~~v~~v~~~~~~~~l~s~~~d~-----~v~vwd~~~  149 (352)
                      |+|++++....++ .  -.+|...  +++.+.+...    .+|...+..++|+|+|++|+.++.++     .|++||+..
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            7888877554332 1  2345432  3332222111    12334688999999999988665433     899999976


Q ss_pred             CCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCc----------------EEEEecCCCCCCCceeEeeeeccCCCC
Q 018675          150 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT----------------IKVWWAEDTDSDNWHCVQTISESNNGH  213 (352)
Q Consensus       150 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~----------------i~iw~~~~~~~~~~~~~~~~~~~~~~h  213 (352)
                      +.....  .+ .+ ..+..++|+|+++.|+.++.++.                |.+|++....... ..+.    ....|
T Consensus       161 g~~~~~--~~-~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~~v~----~~~~~  231 (710)
T 2xdw_A          161 AKELPD--VL-ER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCA----EFPDE  231 (710)
T ss_dssp             TEEEEE--EE-EE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEE----CCTTC
T ss_pred             CCCCcc--cc-cC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc-eEEe----ccCCC
Confidence            543221  11 11 13567899999999998887765                8888875432110 1111    11234


Q ss_pred             cccEEEEEEcCCCCEEEEEeC-----CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC-CceE-EecC
Q 018675          214 SSTIWALSFNAKGDKLVSCSD-----DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EGII-ASGA  286 (352)
Q Consensus       214 ~~~i~~l~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~-~s~~  286 (352)
                      ...+.++.|+|+|++|+..+.     +..|.+||+..... ...+...+   ..+..... .... .+++ ++.+ +...
T Consensus       232 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~---~~l~~~~~-~~~~-~~s~dg~~l~~~s~  305 (710)
T 2xdw_A          232 PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN-GITGILKW---VKLIDNFE-GEYD-YVTNEGTVFTFKTN  305 (710)
T ss_dssp             TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS-SSCSSCCC---EEEECSSS-SCEE-EEEEETTEEEEEEC
T ss_pred             CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc-ccCCccce---EEeeCCCC-cEEE-EEeccCCEEEEEEC
Confidence            556788999999999887664     56888898753000 00000001   11221111 2222 2333 3333 3332


Q ss_pred             C---CCeEEEEEccCCccccCcccceeeecccccC--cceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          287 A---DDSVQFFVESKDDLIDGPSYKMLLKKEKAHD--MDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       287 ~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      .   +..+..++......   .....    ...|.  ..+..++|++++ .++++...|+..+||-+
T Consensus       306 ~~~~~~~l~~~d~~~~~~---~~~~~----l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~  364 (710)
T 2xdw_A          306 RHSPNYRLINIDFTDPEE---SKWKV----LVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLH  364 (710)
T ss_dssp             TTCTTCEEEEEETTSCCG---GGCEE----EECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEE
T ss_pred             CCCCCCEEEEEeCCCCCc---cccee----ccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEE
Confidence            2   23577775433210   01112    22332  368889998765 57889999997655543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.20  E-value=5.5e-08  Score=84.52  Aligned_cols=199  Identities=11%  Similarity=0.009  Sum_probs=122.2

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE  102 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  102 (352)
                      ...+..|+|+.     +.++++...++.|..|+..++..    . .+  .....+.+++|+|+|+++++. . ..+.+||
T Consensus        50 ~~egp~~~~~~-----~~l~~~d~~~~~i~~~d~~~~~~----~-~~--~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d  115 (326)
T 2ghs_A           50 LGEGPTFDPAS-----GTAWWFNILERELHELHLASGRK----T-VH--ALPFMGSALAKISDSKQLIAS-D-DGLFLRD  115 (326)
T ss_dssp             BEEEEEEETTT-----TEEEEEEGGGTEEEEEETTTTEE----E-EE--ECSSCEEEEEEEETTEEEEEE-T-TEEEEEE
T ss_pred             CCcCCeEeCCC-----CEEEEEECCCCEEEEEECCCCcE----E-EE--ECCCcceEEEEeCCCeEEEEE-C-CCEEEEE
Confidence            34578899864     35677777789999999876531    1 11  123578999999999887754 3 4588888


Q ss_pred             ccCCceeeeEeecc-c-cCCeeEEEECCCCcEEEEeeCC----CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC
Q 018675          103 DVGGDYECVATLEG-H-ENEVKSVSWNASGTLLATCGRD----KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD  176 (352)
Q Consensus       103 ~~~~~~~~~~~~~~-h-~~~v~~v~~~~~~~~l~s~~~d----~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  176 (352)
                      ..+++...+..... . ...++.+.++|+|.++++...+    ....+|.+. ......   +..+......++|+|+++
T Consensus       116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~---~~~~~~~~~~i~~s~dg~  191 (326)
T 2ghs_A          116 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTK---LFADISIPNSICFSPDGT  191 (326)
T ss_dssp             TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEE---EEEEESSEEEEEECTTSC
T ss_pred             CCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEE---eeCCCcccCCeEEcCCCC
Confidence            76665443322211 1 2358899999999977665422    223444443 232222   222223456889999998


Q ss_pred             EEEEE-eCCCcEEEEecC--CC-CCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          177 VLFSC-SYDNTIKVWWAE--DT-DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       177 ~l~s~-~~d~~i~iw~~~--~~-~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      .++.+ +.++.|.+|+..  .. ..........+    ......+..++++++|.++++...++.|.+|+.
T Consensus       192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~----~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDS----TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEEC----TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             EEEEEECCCCEEEEEEcccccCCcccCceEEEEC----CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            76544 457889999864  11 11111111111    112344678899999988887766778888864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.19  E-value=3.4e-07  Score=77.86  Aligned_cols=238  Identities=8%  Similarity=-0.019  Sum_probs=153.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE  154 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  154 (352)
                      ..+.+++++++|++.++...++.+.+|+.. ++... ..+......+.++.+.+++.++++...++.|..+|.. +.. .
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~   95 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-T   95 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-E
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-E
Confidence            467889999999988877778999999866 44332 2233334678899999999988877777889999875 332 2


Q ss_pred             EEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC
Q 018675          155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD  234 (352)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~  234 (352)
                      . .........+..+.+.+++.++++...++.|..++...    ...   ...  .......+..+.++++++++++...
T Consensus        96 ~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~---~~~--~~~~~~~~~~i~~d~~g~l~v~~~~  165 (300)
T 2qc5_A           96 E-YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADG----TIY---EYD--LPNKGSYPAFITLGSDNALWFTENQ  165 (300)
T ss_dssp             E-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS----CEE---EEE--CSSTTCCEEEEEECTTSSEEEEETT
T ss_pred             E-ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCC----CEE---Ecc--CCCCCCCceeEEECCCCCEEEEecC
Confidence            1 12222335678899999988777766678888886431    111   111  1123356889999999998877777


Q ss_pred             CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeec
Q 018675          235 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKK  313 (352)
Q Consensus       235 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~  313 (352)
                      ++.|..++... ..         .. .. .......+..+.+++++ .+++....+.+..++.... .      ..  ..
T Consensus       166 ~~~i~~~~~~g-~~---------~~-~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~-~------~~--~~  224 (300)
T 2qc5_A          166 NNSIGRITNTG-KL---------EE-YP-LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-I------SE--YD  224 (300)
T ss_dssp             TTEEEEECTTC-CE---------EE-EE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-E------EE--EE
T ss_pred             CCeEEEECCCC-cE---------EE-ee-CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCc-E------EE--EE
Confidence            78899997521 11         00 00 01123356777888766 4444455667877754211 0      00  11


Q ss_pred             ccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       314 ~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      ...+...+.++++.+++. ++++...++.|..|+.
T Consensus       225 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          225 IPTPNARPHAITAGKNSE-IWFTEWGANQIGRITN  258 (300)
T ss_dssp             CSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECT
T ss_pred             CCCCCCCceEEEECCCCC-EEEeccCCCeEEEECC
Confidence            123445688999999886 6777766788888876

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.17  E-value=7.4e-10  Score=97.76  Aligned_cols=180  Identities=13%  Similarity=0.059  Sum_probs=119.8

Q ss_pred             CeeEEEECCCCcEEEEeeCCCcEEEEecCCCC--------eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 018675          120 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGN--------EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW  191 (352)
Q Consensus       120 ~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~  191 (352)
                      .++.+++++...++++|+.++ +.+|++....        ..+... ...+.. |..++|  ++..|+++ .++.|++|+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            588999999999999999986 6679863211        011111 123455 999999  88888888 889999998


Q ss_pred             cCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcce
Q 018675          192 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI  271 (352)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  271 (352)
                      +......     ....    .|...+.++.+.+.  .+++++.||.|.+||++....           . .    ....+
T Consensus       113 v~sl~~~-----~~~~----~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~-----------~-~----~~~~V  165 (388)
T 1xip_A          113 LEELSEF-----RTVT----SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-----------K-Q----LAQNV  165 (388)
T ss_dssp             SSSTTCE-----EEEE----ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE-----------E-E----EEESE
T ss_pred             chhhhcc-----Cccc----eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc-----------c-c----ccCCc
Confidence            7654321     1111    24456777776654  388899999999999853211           0 0    23468


Q ss_pred             EEEEecCCceEEecCCCCeEEEEEccCCcc--c-cCcccceeeecccccCcceeEEEecCCCcceE
Q 018675          272 FSVHWSREGIIASGAADDSVQFFVESKDDL--I-DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLL  334 (352)
Q Consensus       272 ~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~--~-~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l  334 (352)
                      .+++|+++| ++.|..||++++|.......  . ..+.+.. +....+|...|.++.|.+++..++
T Consensus       166 s~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~-~~~~~~~~~~V~sI~wl~~~~flv  229 (388)
T 1xip_A          166 TSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSE-LEELPVEEYSPLSVTILSPQDFLA  229 (388)
T ss_dssp             EEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHH-HHTSCTTTSEEEEEEESSSSEEEE
T ss_pred             eEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcc-cccccCCCeeEEEEEEecCCeEEE
Confidence            999999999 77888999999996654321  0 0000000 011125788999999999876443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.14  E-value=9.3e-08  Score=83.15  Aligned_cols=235  Identities=9%  Similarity=0.016  Sum_probs=144.9

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE  102 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~  102 (352)
                      ...++.+..       ..++++...+++|.+||..+.+......      .......+++++++++.++...++.|.+||
T Consensus        45 ~~~~i~~~~-------~~lyv~~~~~~~v~viD~~t~~~~~~i~------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD  111 (328)
T 3dsm_A           45 VAQSMVIRD-------GIGWIVVNNSHVIFAIDINTFKEVGRIT------GFTSPRYIHFLSDEKAYVTQIWDYRIFIIN  111 (328)
T ss_dssp             CEEEEEEET-------TEEEEEEGGGTEEEEEETTTCCEEEEEE------CCSSEEEEEEEETTEEEEEEBSCSEEEEEE
T ss_pred             cceEEEEEC-------CEEEEEEcCCCEEEEEECcccEEEEEcC------CCCCCcEEEEeCCCeEEEEECCCCeEEEEE
Confidence            456676643       3567777778999999998775433221      234578899999986666655899999999


Q ss_pred             ccCCceeeeEeecccc-----CCeeEEEECCCCcEEEEee-CCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC
Q 018675          103 DVGGDYECVATLEGHE-----NEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD  176 (352)
Q Consensus       103 ~~~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  176 (352)
                      ..+++..  ..+....     .....+++ .++.++++.. .+++|.++|......   +..+.. ......+.++|+++
T Consensus       112 ~~t~~~~--~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~---~~~i~~-g~~p~~i~~~~dG~  184 (328)
T 3dsm_A          112 PKTYEIT--GYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKV---VDELTI-GIQPTSLVMDKYNK  184 (328)
T ss_dssp             TTTTEEE--EEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEE---EEEEEC-SSCBCCCEECTTSE
T ss_pred             CCCCeEE--EEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeE---EEEEEc-CCCccceEEcCCCC
Confidence            8776432  2222111     14556777 4444444443 488999999875543   222222 12345778899998


Q ss_pred             EEEEEeCC----------CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          177 VLFSCSYD----------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       177 ~l~s~~~d----------~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      +++++..+          +.|.++|....     .....+..   ........++++|++++|..+..  .|.+||....
T Consensus       185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~-----~v~~~~~~---~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~  254 (328)
T 3dsm_A          185 MWTITDGGYEGSPYGYEAPSLYRIDAETF-----TVEKQFKF---KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEAD  254 (328)
T ss_dssp             EEEEBCCBCTTCSSCBCCCEEEEEETTTT-----EEEEEEEC---CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCS
T ss_pred             EEEEECCCccCCccccCCceEEEEECCCC-----eEEEEEec---CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCC
Confidence            77666554          68999975432     22222221   11235788999999988877654  8888987543


Q ss_pred             ccccCCCCccceeeEEeecccCcceEEEEecC-Cc-eEEec----CCCCeEEEEEcc
Q 018675          247 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSR-EG-IIASG----AADDSVQFFVES  297 (352)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~s~----~~d~~v~~~~~~  297 (352)
                      +.....          +.......+..++++| ++ .+++.    ..++.|.+|+..
T Consensus       255 ~~~~~~----------~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          255 RVPVRP----------FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             SCCSSC----------SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             ceeeee----------eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            221100          0000134577888887 44 45555    567888888654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.13  E-value=4.9e-07  Score=81.05  Aligned_cols=203  Identities=10%  Similarity=0.100  Sum_probs=125.9

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCC--cE
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDA--TT   98 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~--~i   98 (352)
                      .....+|+|.|+      +.++++...++.|++|+..++...    ..... . .... ++|+|+++.|+++..++  .+
T Consensus       130 ~~~P~~la~d~~------g~lyv~d~~~~~I~~id~~~g~~~----~~~~~-~-~~~~-ia~~~~g~~l~~~d~~~~~~I  196 (409)
T 3hrp_A          130 FKYMWGIAAVGN------NTVLAYQRDDPRVRLISVDDNKVT----TVHPG-F-KGGK-PAVTKDKQRVYSIGWEGTHTV  196 (409)
T ss_dssp             CCCEEEEEECST------TEEEEEETTTTEEEEEETTTTEEE----EEEET-C-CBCB-CEECTTSSEEEEEBSSTTCEE
T ss_pred             cCCceEEEEeCC------CCEEEEecCCCcEEEEECCCCEEE----Eeecc-C-CCCc-eeEecCCCcEEEEecCCCceE
Confidence            346778999886      467777777899999998765321    11111 1 1223 89999999988888766  67


Q ss_pred             EEEEccCCce-eeeEeecc-ccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEE--eecCccCe--eEEEEc
Q 018675           99 CIWEDVGGDY-ECVATLEG-HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDV--KMVQWH  172 (352)
Q Consensus        99 ~i~~~~~~~~-~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~h~~~v--~~~~~~  172 (352)
                      .+++..++.. .....+.. ....+.+++++|++..|+.+..++.|..||..... ...+..  ..++...-  ..++|+
T Consensus       197 ~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~~~~~~~~~~g~~~~~P~~~ia~~  275 (409)
T 3hrp_A          197 YVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-VTLIKQLELSGSLGTNPGPYLIYY  275 (409)
T ss_dssp             EEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-EEEEEECCCCSCCCCSSCCEEEEE
T ss_pred             EEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-EEEEecccccCCCCCCccccEEEe
Confidence            7777654332 11111112 44667899999944444446678889999976443 111111  11222112  289999


Q ss_pred             CC-CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeecc--CC---------CCcccEEEEEEcCCCCEEEEEe-CCCcEE
Q 018675          173 PT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES--NN---------GHSSTIWALSFNAKGDKLVSCS-DDLTIK  239 (352)
Q Consensus       173 ~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~--~~---------~h~~~i~~l~~~~~~~~l~s~~-~dg~i~  239 (352)
                      |+ +.++++-...+.|..|+....    .   ..+...  ..         +.-.....++++|+|.++++-. .+++|+
T Consensus       276 p~~g~lyv~d~~~~~I~~~~~~g~----~---~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~  348 (409)
T 3hrp_A          276 FVDSNFYMSDQNLSSVYKITPDGE----C---EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLR  348 (409)
T ss_dssp             TTTTEEEEEETTTTEEEEECTTCC----E---EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEecCCC----E---EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence            95 555566666788888864321    1   111100  00         1123578899999999888888 889999


Q ss_pred             EEcCC
Q 018675          240 IWGAD  244 (352)
Q Consensus       240 iwd~~  244 (352)
                      .|+..
T Consensus       349 ~~~~~  353 (409)
T 3hrp_A          349 KLDIL  353 (409)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            99853

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.12  E-value=2.7e-08  Score=95.57  Aligned_cols=202  Identities=9%  Similarity=0.115  Sum_probs=120.2

Q ss_pred             cCCccceEEEEEccCCCCCCCccEEE-----EeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           18 EGHTDRVWSLAWKPTAGVDGVAPVFA-----SCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        18 ~gH~~~V~~i~~~p~~~~~~~~~~l~-----s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      ++|...+.+++|+|+      ++++|     +|+.+.+|++||+.+++....   .+   +......++|+ ||+.|+.+
T Consensus       125 ~~~~~~l~~~~~SpD------g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~---~~~k~~~~~Ws-Dg~~l~y~  191 (693)
T 3iuj_A          125 PDGTTALDQLSFSRD------GRILAYSLSLAGSDWREIHLMDVESKQPLET---PL---KDVKFSGISWL-GNEGFFYS  191 (693)
T ss_dssp             TTSCCEEEEEEECTT------SSEEEEEEECSSCCEEEEEEEETTTCSEEEE---EE---EEEESCCCEEE-TTTEEEEE
T ss_pred             CCCcEEEEEEEECCC------CCEEEEEEecCCCceEEEEEEECCCCCCCcc---cc---CCceeccEEEe-CCCEEEEE
Confidence            357778889999997      45666     233336899999988753211   11   11113567899 99999988


Q ss_pred             eCCCc-------------EEEEEccCCce--eeeEeecc-ccCCeeEEEECCCCcEEEEee----CCCcEEEEecCCCCe
Q 018675           93 SFDAT-------------TCIWEDVGGDY--ECVATLEG-HENEVKSVSWNASGTLLATCG----RDKSVWIWEVMPGNE  152 (352)
Q Consensus        93 ~~d~~-------------i~i~~~~~~~~--~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~----~d~~v~vwd~~~~~~  152 (352)
                      +.+..             |.+|+..+...  .++..... |...+..+.|+|+|++|+...    .+..|.++|+..+..
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~  271 (693)
T 3iuj_A          192 SYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA  271 (693)
T ss_dssp             ESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred             EecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence            88743             78887655432  22333333 445577899999999765433    225789999865421


Q ss_pred             eEEEEEeecCccCeeEEEEcCCCCEEE-EEeCC---CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE
Q 018675          153 FECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYD---NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK  228 (352)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~  228 (352)
                        ....+..+....... +++++..|+ ....+   +.|..+++.......|..   +.    .|...+.  .|+++++.
T Consensus       272 --~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~---l~----~~~~~~~--~~s~~g~~  339 (693)
T 3iuj_A          272 --PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD---LI----PERQQVL--TVHSGSGY  339 (693)
T ss_dssp             --CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---EE----CCCSSCE--EEEEETTE
T ss_pred             --ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE---Ee----cCCCCEE--EEEEECCE
Confidence              122333444444333 566666554 44433   467777766543333332   21    2333333  78888888


Q ss_pred             EEEEeC-CC--cEEEEcCC
Q 018675          229 LVSCSD-DL--TIKIWGAD  244 (352)
Q Consensus       229 l~s~~~-dg--~i~iwd~~  244 (352)
                      |+.... ++  .|++|+++
T Consensus       340 lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          340 LFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             EEEEEEETTEEEEEEECTT
T ss_pred             EEEEEEECCeeEEEEEECC
Confidence            876654 44  67777754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.10  E-value=5.1e-08  Score=83.82  Aligned_cols=230  Identities=11%  Similarity=0.093  Sum_probs=132.6

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE
Q 018675           76 TVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE  154 (352)
Q Consensus        76 ~v~~~~~s~~~~-~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  154 (352)
                      ......|+|+|+ +++++..++.+..|+. ++..   ..+..+...+..+.++++|+++++...++.|..|+.. +. ..
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~---~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~  119 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV---DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AH  119 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE---EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE---EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-EE
Confidence            456778999998 6677777889999976 4432   2333345678999999999977766666789999864 33 22


Q ss_pred             EEE-EeecC-ccCeeEEEEcCCCCEEEE----EeC-------------CCcEEEEecCCCCCCCceeEeeeeccCCCCcc
Q 018675          155 CVS-VLQGH-AQDVKMVQWHPTMDVLFS----CSY-------------DNTIKVWWAEDTDSDNWHCVQTISESNNGHSS  215 (352)
Q Consensus       155 ~~~-~~~~h-~~~v~~~~~~~~~~~l~s----~~~-------------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~  215 (352)
                      .+. ...+. ...+..+.+.|++.+.++    |..             .+.|..++....   ......        ...
T Consensus       120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g---~~~~~~--------~~~  188 (305)
T 3dr2_A          120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS---PLQRMA--------DLD  188 (305)
T ss_dssp             EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC---CCEEEE--------EES
T ss_pred             EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC---cEEEEe--------cCC
Confidence            221 11111 123567899999988776    321             134555543221   111111        113


Q ss_pred             cEEEEEEcCCCCEEEEEeCC------CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCC
Q 018675          216 TIWALSFNAKGDKLVSCSDD------LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADD  289 (352)
Q Consensus       216 ~i~~l~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~  289 (352)
                      ..+.++|+|+++.|..+...      +.|.+|+++....         .....+.......+..+..++++.+..+..+ 
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l---------~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-  258 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL---------HDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-  258 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE---------EEEEEEECCSSSCCCSEEECTTSCEEECCSS-
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc---------cCCeEEEECCCCCCCeEEECCCCCEEEecCC-
Confidence            46789999999977766554      6888887642110         0111111111222344666777765555544 


Q ss_pred             eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEE
Q 018675          290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIK  344 (352)
Q Consensus       290 ~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~  344 (352)
                      .|.+|+....          .+....... .+..++|+|+++.+++++. ++..+
T Consensus       259 gv~~~~~~g~----------~~~~~~~~~-~~~~~~f~~d~~~L~it~~-~~l~~  301 (305)
T 3dr2_A          259 GVCVFDSDGQ----------LLGHIPTPG-TASNCTFDQAQQRLFITGG-PCLWM  301 (305)
T ss_dssp             EEEEECTTSC----------EEEEEECSS-CCCEEEECTTSCEEEEEET-TEEEE
T ss_pred             cEEEECCCCC----------EEEEEECCC-ceeEEEEeCCCCEEEEEcC-CeEEE
Confidence            4777754321          111111222 4889999998876665554 54333

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.06  E-value=2e-06  Score=76.05  Aligned_cols=265  Identities=11%  Similarity=-0.017  Sum_probs=138.0

Q ss_pred             eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe----------CCCcEEEEEccCCceeeeEeeccc--
Q 018675           50 TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS----------FDATTCIWEDVGGDYECVATLEGH--  117 (352)
Q Consensus        50 ~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~i~i~~~~~~~~~~~~~~~~h--  117 (352)
                      +|.++|..+.+..    ..+.   .+....++++|||+.+..+.          .++.+.++|..+.+.  +..+.--  
T Consensus        48 ~v~v~D~~t~~~~----~~i~---~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~--~~~i~~~~~  118 (373)
T 2mad_H           48 QQWVLDAGSGSIL----GHVN---GGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP--IADIELPDA  118 (373)
T ss_pred             EEEEEECCCCeEE----EEec---CCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE--EEEEECCCc
Confidence            8899998776432    1121   11122889999999988775          367899998765432  2322110  


Q ss_pred             -----cCCeeEEEECCCCcEEEEeeC--CCcEEEEecCCCCeeEEEEE-eecCccCeeEEEEcCCC-CEEEEEeCCCcEE
Q 018675          118 -----ENEVKSVSWNASGTLLATCGR--DKSVWIWEVMPGNEFECVSV-LQGHAQDVKMVQWHPTM-DVLFSCSYDNTIK  188 (352)
Q Consensus       118 -----~~~v~~v~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~  188 (352)
                           ......+.|+|+|++|+.+..  +++|.++| ..++..   .. +.. .   .++.+.|++ ..+++.+.|+.+.
T Consensus       119 ~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~---~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~  190 (373)
T 2mad_H          119 PRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD---DQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLA  190 (373)
T ss_pred             cccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE---eEEcCC-C---ceEEEEeCCCceEEEEcCCCCEE
Confidence                 123457899999999888874  57899999 765432   22 211 1   123444554 3456677899998


Q ss_pred             EEecCCCCCCCceeEeeee--ccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeE---Ee
Q 018675          189 VWWAEDTDSDNWHCVQTIS--ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLC---TI  263 (352)
Q Consensus       189 iw~~~~~~~~~~~~~~~~~--~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~  263 (352)
                      +++. ....     .....  ....+...-.....+.+++..++..+.++.+.+.|+........   ..+....   ..
T Consensus       191 ~vd~-~g~~-----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~---~~~~~~~~~~~~  261 (373)
T 2mad_H          191 KTDH-AGGA-----AGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK---APIDALSGGRKA  261 (373)
T ss_pred             EEEC-CCcE-----EEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEe---eeeeecCCcccc
Confidence            8876 3211     10110  00011111112244566655444444678888888642111000   0000000   00


Q ss_pred             ecccCcceEEEEecCCc-e-EEecC---------CCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcc
Q 018675          264 SGYHDRTIFSVHWSREG-I-IASGA---------ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR  332 (352)
Q Consensus       264 ~~~~~~~i~~~~~~~~~-~-~~s~~---------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~  332 (352)
                      ..........+.+++++ . +++..         ..+.+.+++....         +++.+. ........++|+||++.
T Consensus       262 ~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---------~vv~~i-~~g~~p~~i~~s~Dg~~  331 (373)
T 2mad_H          262 DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSSQI-SLGHDVDAISVAQDGGP  331 (373)
T ss_pred             cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------EEEEEE-ECCCCcCeEEECCCCCe
Confidence            00001112223445543 2 22221         1245666644321         111111 12235789999999983


Q ss_pred             eEEEec-CCCeEEEEeecc
Q 018675          333 LLASAS-DDGMIKIWELAN  350 (352)
Q Consensus       333 ~l~s~~-~Dg~i~iw~~~~  350 (352)
                      +++++. .++.|.|+|++.
T Consensus       332 ~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          332 DLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             EEEEEcCCCCeEEEEECCC
Confidence            444555 689999999865

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.05  E-value=2.3e-07  Score=79.67  Aligned_cols=204  Identities=11%  Similarity=0.091  Sum_probs=125.9

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeee-eeeeecceecceEEEEECCCCCEEEEEeCC---
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNC-KAVLEEMHTRTVRSCAWSPSGKLLATASFD---   95 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---   95 (352)
                      +...+.++.+.|+.     +.++++. .++.|.+|+.. ++. ... ...........+.+++++++|++.++...+   
T Consensus        69 ~~~~~~~i~~~~~~-----g~l~v~~-~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~  140 (314)
T 1pjx_A           69 YGGIPAGCQCDRDA-----NQLFVAD-MRLGLLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVA  140 (314)
T ss_dssp             EECCEEEEEECSSS-----SEEEEEE-TTTEEEEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCT
T ss_pred             CCCCCceEEEecCC-----CcEEEEE-CCCCEEEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccc
Confidence            55678899998862     2344443 44578889876 432 111 100001122457899999999988876654   


Q ss_pred             ------------CcEEEEEccCCceeeeEeeccccCCeeEEEEC----CCCcEE-EEeeCCCcEEEEecCCCCeeE---E
Q 018675           96 ------------ATTCIWEDVGGDYECVATLEGHENEVKSVSWN----ASGTLL-ATCGRDKSVWIWEVMPGNEFE---C  155 (352)
Q Consensus        96 ------------~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~----~~~~~l-~s~~~d~~v~vwd~~~~~~~~---~  155 (352)
                                  +.+..++.. +...   .+..+......++|+    |+++.+ ++...++.|.+|++.......   .
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~-g~~~---~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~  216 (314)
T 1pjx_A          141 PADYTRSMQEKFGSIYCFTTD-GQMI---QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV  216 (314)
T ss_dssp             TSCCCBTTSSSCEEEEEECTT-SCEE---EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE
T ss_pred             cccccccccCCCCeEEEECCC-CCEE---EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE
Confidence                        456555543 3322   122233456889999    998655 444567899999975222211   2


Q ss_pred             EEEeecCc-cCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-EEEEEe
Q 018675          156 VSVLQGHA-QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCS  233 (352)
Q Consensus       156 ~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s~~  233 (352)
                      ...+..+. .....+++++++.++++...++.|..|+.....     ....+.    .+...+.+++|+|+++ ++++..
T Consensus       217 ~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~-----~~~~~~----~~~~~~~~i~~~~dg~~l~v~~~  287 (314)
T 1pjx_A          217 WGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ-----PKMRIR----CPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             EEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS-----CSEEEE----CSSSCEEEEEECTTSSEEEEEET
T ss_pred             EEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc-----EeEEEe----CCCCCceeEEECCCCCEEEEEeC
Confidence            22233332 456788999999888887788899999754211     111121    2336788999999999 455556


Q ss_pred             CCCcEEEEcCC
Q 018675          234 DDLTIKIWGAD  244 (352)
Q Consensus       234 ~dg~i~iwd~~  244 (352)
                      .++.|..|+.+
T Consensus       288 ~~~~l~~~~~~  298 (314)
T 1pjx_A          288 ENNAVWKFEWQ  298 (314)
T ss_dssp             TTTEEEEEECS
T ss_pred             CCCeEEEEeCC
Confidence            67889999865

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.03  E-value=3.3e-08  Score=86.60  Aligned_cols=274  Identities=10%  Similarity=0.041  Sum_probs=149.9

Q ss_pred             cceEEEEEccCCCCCCCccEEEEee--CCCeEEEEecCCCceeeeeee--eeecceecceEEEEECCCCCEEEEEeC---
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCS--GDKTVRIWEQSASSRFWNCKA--VLEEMHTRTVRSCAWSPSGKLLATASF---   94 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s--~D~~v~~w~~~~~~~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~~~---   94 (352)
                      .....++++|+      +.++++..  .++.++||.+.++ .+.....  .....|-..+..++++++|++.++-..   
T Consensus        17 ~~p~~va~~~~------g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~   89 (343)
T 2qe8_A           17 LAPGNITLTPD------GRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQS   89 (343)
T ss_dssp             SCEEEEEECTT------SCEEEEECGGGCCSCSEEEEETT-EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHH
T ss_pred             CCcceEEECCC------CCEEEEeCCCCCCceEEEEECCC-CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCc
Confidence            67889999986      46788753  2343677766532 2211110  001124467899999999987776544   


Q ss_pred             --CCcEEEEEccCCceeeeEeec----cccCCeeEEEECCC-CcEEEEee---CCCcEEEEecCCCCeeEEEEEeecCcc
Q 018675           95 --DATTCIWEDVGGDYECVATLE----GHENEVKSVSWNAS-GTLLATCG---RDKSVWIWEVMPGNEFECVSVLQGHAQ  164 (352)
Q Consensus        95 --d~~i~i~~~~~~~~~~~~~~~----~h~~~v~~v~~~~~-~~~l~s~~---~d~~v~vwd~~~~~~~~~~~~~~~h~~  164 (352)
                        ++.|.+||..+++......+.    .+...+..+++.++ +..+++..   .++.|.+||+..+..   ...+.+|..
T Consensus        90 ~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~---~r~~~~~~~  166 (343)
T 2qe8_A           90 KSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA---ARVLQGYPG  166 (343)
T ss_dssp             TSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE---EEECTTCTT
T ss_pred             CCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE---EEEecCCCc
Confidence              578999998776532222221    12235688999975 44556655   678999999865542   233333321


Q ss_pred             Cee-EEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          165 DVK-MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       165 ~v~-~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      ... ...+.+++..+.+.+.++.++.|.                       ..++.|+|+|+++.|..+..++. ++|.+
T Consensus       167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~-----------------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~  222 (343)
T 2qe8_A          167 IAPEDIDLVIDGVPVQIGQPDGTVIRPH-----------------------LGVNGIVLDAENEWLYLSPMHST-SMYRI  222 (343)
T ss_dssp             TSCCSCCCEETTEECBEECTTSCEECCC-----------------------CCEEEEEECTTSCEEEEEESSCS-EEEEE
T ss_pred             ccccccceeECCEEEEeccCCCceecee-----------------------cccceeEeccCCCEEEEEeCCCC-eEEEE
Confidence            100 022334555555555666554441                       23577999999998887776653 44543


Q ss_pred             CccccccCC--CCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcc
Q 018675          244 DITRMQSGD--GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD  320 (352)
Q Consensus       244 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  320 (352)
                      +........  ........... + +......+++++++ ++++...++.|..|+.....      ...+..  ..+...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~-g-~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~------~~~~~~--~~~~~~  292 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERY-S-EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA------YKLLVT--DEKLSW  292 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEE-E-ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE------EEEEEE--CGGGSC
T ss_pred             EHHHhcCCCCChhhhhcceEec-c-cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC------EEEEEE--CCceec
Confidence            221110000  00000000000 0 11123346667665 56666777889999762111      111111  123446


Q ss_pred             eeEEEecCCCcceEEEecCC
Q 018675          321 VNSVQWSPGERRLLASASDD  340 (352)
Q Consensus       321 i~~~~~sp~~~~~l~s~~~D  340 (352)
                      .++++|.|+++ ++++.+..
T Consensus       293 p~~va~~~~g~-l~v~~~~~  311 (343)
T 2qe8_A          293 TDSFNFGSDGY-LYFDCNQL  311 (343)
T ss_dssp             EEEEEECTTSC-EEEEECCG
T ss_pred             CCeeEECCCCc-EEEEeCcc
Confidence            88999999875 66666543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.00  E-value=9.1e-07  Score=77.83  Aligned_cols=264  Identities=14%  Similarity=0.050  Sum_probs=141.7

Q ss_pred             CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe----------CCCcEEEEEccCCceeeeEeec--
Q 018675           48 DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS----------FDATTCIWEDVGGDYECVATLE--  115 (352)
Q Consensus        48 D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~i~i~~~~~~~~~~~~~~~--  115 (352)
                      +++|.+.|..+.+......    . -..+ . ++++|||+.+.++.          .++.+.+||..+.+.  +..+.  
T Consensus        58 ~~~V~ViD~~t~~v~~~I~----v-G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v--~~~I~v~  128 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMID----G-GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP--TADIELP  128 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEE----E-CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE--EEEEEET
T ss_pred             CCEEEEEECCCCeEEEEEE----C-CCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE--EEEEECC
Confidence            7899999988765432221    1 1123 3 99999999876664          357899999877643  33332  


Q ss_pred             c--c---cCCeeEEEECCCCcEEEEeeC--CCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEE
Q 018675          116 G--H---ENEVKSVSWNASGTLLATCGR--DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK  188 (352)
Q Consensus       116 ~--h---~~~v~~v~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~  188 (352)
                      .  +   ......+.++|+|++++.+..  +++|.++|+...+.   +..+.-  ..+ ...+......+++.+.||.+.
T Consensus       129 ~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v---v~tI~v--~g~-~~~~P~g~~~~~~~~~DG~~~  202 (386)
T 3sjl_D          129 DAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF---KRMLDV--PDC-YHIFPTAPDTFFMHCRDGSLA  202 (386)
T ss_dssp             TCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE---EEEEEC--CSE-EEEEEEETTEEEEEETTSCEE
T ss_pred             CccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE---EEEEEC--CCc-ceeecCCCceeEEECCCCCEE
Confidence            1  0   124567999999998887763  68999999876543   333321  111 122322345667788888888


Q ss_pred             EEecCCCCCCCceeEeeeeccCCCCcccEE-EEEE-cCCCCEEEEEeCCCcEEEEcCCccccccCCCC---------ccc
Q 018675          189 VWWAEDTDSDNWHCVQTISESNNGHSSTIW-ALSF-NAKGDKLVSCSDDLTIKIWGADITRMQSGDGY---------ASW  257 (352)
Q Consensus       189 iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~l~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~  257 (352)
                      +.++.......    .+.......-..++. ...| .++|+++. .+.+|+|.+.|+...........         ..|
T Consensus       203 ~v~~~~~g~v~----~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~  277 (386)
T 3sjl_D          203 KVAFGTEGTPE----ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW  277 (386)
T ss_dssp             EEECCSSSCCE----EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE
T ss_pred             EEECCCCCeEE----EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccc
Confidence            87765421110    000000000111221 1345 36776554 44579999998743211100000         001


Q ss_pred             eeeEEeecccCcceEEEEecCCc--eEEecC---------CCCeEEEEEccCCccccCcccceeeecccccCcceeEEEe
Q 018675          258 RHLCTISGYHDRTIFSVHWSREG--IIASGA---------ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQW  326 (352)
Q Consensus       258 ~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~---------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  326 (352)
                      ++       ......  ..++++  .+++..         ..+.|.+++....        +.+.....+  ..++.+++
T Consensus       278 ~p-------~g~q~~--a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--------kv~~~i~vg--~~~~~lav  338 (386)
T 3sjl_D          278 RP-------GGWQQV--AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--------ERLAKFEMG--HEIDSINV  338 (386)
T ss_dssp             EE-------CSSSCE--EEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--------CEEEEEEEE--EEECEEEE
T ss_pred             cC-------CCccee--eECCCCCeEEEEeccccccccCCCCCEEEEEECCCC--------eEEEEEECC--CCcceEEE
Confidence            10       011122  223332  222211         1134555544321        122111222  36889999


Q ss_pred             cCCCc-ceEEEecCCCeEEEEeecc
Q 018675          327 SPGER-RLLASASDDGMIKIWELAN  350 (352)
Q Consensus       327 sp~~~-~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +||++ .++++...++.|.|+|..+
T Consensus       339 s~D~~~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          339 SQDEKPLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             CSSSSCEEEEEETTTTEEEEEETTT
T ss_pred             CCCCCeEEEEEcCCCCeEEEEECCC
Confidence            99986 5666677899999999864

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.94  E-value=1.3e-06  Score=75.03  Aligned_cols=203  Identities=14%  Similarity=0.088  Sum_probs=123.1

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      .+..+.....+..|.|+.     ..++++...++.|..|+......      .+ ..+...+..++++++|+++++...+
T Consensus        39 ~l~~~~~~~egp~~~~~g-----~~l~~~d~~~~~i~~~~~~g~~~------~~-~~~~~~~~gl~~d~dG~l~v~~~~~  106 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQ-----RTLVWSDLVGRRVLGWREDGTVD------VL-LDATAFTNGNAVDAQQRLVHCEHGR  106 (305)
T ss_dssp             EEECCCSSEEEEEEEGGG-----TEEEEEETTTTEEEEEETTSCEE------EE-EESCSCEEEEEECTTSCEEEEETTT
T ss_pred             EEecCCcCccCCeEeCCC-----CEEEEEECCCCEEEEEeCCCCEE------EE-eCCCCccceeeECCCCCEEEEECCC
Confidence            344455667789999973     13677877889999998743211      11 1234568899999999977766566


Q ss_pred             CcEEEEEccCCceeeeEe-eccc-cCCeeEEEECCCCcEEEE----eeC-------------CCcEEEEecCCCCeeEEE
Q 018675           96 ATTCIWEDVGGDYECVAT-LEGH-ENEVKSVSWNASGTLLAT----CGR-------------DKSVWIWEVMPGNEFECV  156 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~-~~~h-~~~v~~v~~~~~~~~l~s----~~~-------------d~~v~vwd~~~~~~~~~~  156 (352)
                      +.|.+|+.. +....+.. ..+. ...++.+.+.++|.++++    |..             .+.|..+|...+.. ..+
T Consensus       107 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-~~~  184 (305)
T 3dr2_A          107 RAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-QRM  184 (305)
T ss_dssp             TEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-EEE
T ss_pred             CEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-EEE
Confidence            789888764 43322221 1111 234678999999998886    332             24566666533332 222


Q ss_pred             EEeecCccCeeEEEEcCCCCEEEEEeCC------CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE
Q 018675          157 SVLQGHAQDVKMVQWHPTMDVLFSCSYD------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV  230 (352)
Q Consensus       157 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  230 (352)
                      .    .......++|+|+++.|+.+...      +.|..|++....   ......+...   .......+.++++|++.+
T Consensus       185 ~----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~---l~~~~~~~~~---~~~~pdgi~~d~~G~lwv  254 (305)
T 3dr2_A          185 A----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA---LHDRRHFASV---PDGLPDGFCVDRGGWLWS  254 (305)
T ss_dssp             E----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE---EEEEEEEECC---SSSCCCSEEECTTSCEEE
T ss_pred             e----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC---ccCCeEEEEC---CCCCCCeEEECCCCCEEE
Confidence            1    22345788999999977776655      678888764321   1111111111   112344678999999666


Q ss_pred             EEeCCCcEEEEcCC
Q 018675          231 SCSDDLTIKIWGAD  244 (352)
Q Consensus       231 s~~~dg~i~iwd~~  244 (352)
                      +. .+ .|.+|+.+
T Consensus       255 ~~-~~-gv~~~~~~  266 (305)
T 3dr2_A          255 SS-GT-GVCVFDSD  266 (305)
T ss_dssp             CC-SS-EEEEECTT
T ss_pred             ec-CC-cEEEECCC
Confidence            55 44 48888753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.79  E-value=1.1e-05  Score=68.82  Aligned_cols=192  Identities=10%  Similarity=0.056  Sum_probs=114.6

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC-----
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD-----   95 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----   95 (352)
                      ...+.+++++|+      +.++++ . ++.|.+|+..++... .............++.++++|+|++.++...+     
T Consensus        53 ~~~~~~i~~~~d------G~l~v~-~-~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~  123 (297)
T 3g4e_A           53 DAPVSSVALRQS------GGYVAT-I-GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPA  123 (297)
T ss_dssp             SSCEEEEEEBTT------SSEEEE-E-TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTT
T ss_pred             CCceEEEEECCC------CCEEEE-E-CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccc
Confidence            467889999986      355444 3 568889998765321 11110000112457899999999977754322     


Q ss_pred             ----CcEEEEEccC-CceeeeEeeccccCCeeEEEECCCCcEE-EEeeCCCcEEEEecC--CCCee--EEEEEeecCccC
Q 018675           96 ----ATTCIWEDVG-GDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVM--PGNEF--ECVSVLQGHAQD  165 (352)
Q Consensus        96 ----~~i~i~~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~vwd~~--~~~~~--~~~~~~~~h~~~  165 (352)
                          ....+|.... +...   .+..+....+.++|+|+++.| ++.+.++.|.+|++.  .+...  .....+..+...
T Consensus       124 ~~~~~~~~l~~~d~~g~~~---~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~  200 (297)
T 3g4e_A          124 VLERHQGALYSLFPDHHVK---KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI  200 (297)
T ss_dssp             BCCTTCEEEEEECTTSCEE---EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE
T ss_pred             cccCCCcEEEEEECCCCEE---EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCC
Confidence                3345665432 2221   122233456889999999865 455667889999873  23211  112222223345


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc-CCCCEEEEEe
Q 018675          166 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN-AKGDKLVSCS  233 (352)
Q Consensus       166 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~~~l~s~~  233 (352)
                      ...+++.+++.+.++....+.|..|+....     .....+.    .+...+.+++|. |+++.|...+
T Consensus       201 p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-----~~~~~i~----~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          201 PDGMCIDAEGKLWVACYNGGRVIRLDPVTG-----KRLQTVK----LPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEEEEEBTTSCEEEEEETTTEEEEECTTTC-----CEEEEEE----CSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CCeeEECCCCCEEEEEcCCCEEEEEcCCCc-----eEEEEEE----CCCCCceEEEEeCCCCCEEEEEc
Confidence            678889999987777777888999965321     1223332    233568999998 7876654443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.78  E-value=1.9e-06  Score=77.04  Aligned_cols=279  Identities=12%  Similarity=0.025  Sum_probs=145.4

Q ss_pred             EEEEeeCC----CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe----------CCCcEEEEEccCC
Q 018675           41 VFASCSGD----KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS----------FDATTCIWEDVGG  106 (352)
Q Consensus        41 ~l~s~s~D----~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~i~i~~~~~~  106 (352)
                      .+++...+    ++|.+.|..+.+.......     -..+  .++++|||+.|.++.          .++.|.++|..+.
T Consensus        87 vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-----G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           87 VYIQDPAHFAAITQQFVIDGSTGRILGMTDG-----GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEE-----CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             EEEECCCcCCCCCeEEEEECCCCEEEEEEEC-----CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            44444444    7999999988754333221     1123  789999999877765          3678999987766


Q ss_pred             ceeeeEeec--c---ccCCeeEEEECCCCcEEEEeeC--CCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCC-CEE
Q 018675          107 DYECVATLE--G---HENEVKSVSWNASGTLLATCGR--DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM-DVL  178 (352)
Q Consensus       107 ~~~~~~~~~--~---h~~~v~~v~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l  178 (352)
                      +......+.  .   .......+.++|+|++++.+..  +++|.+.|+...+..   ..+.-  ...  ....|++ ..+
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv---~~I~v--~g~--~~~~p~g~~~~  232 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD---RMLDV--PDC--YHIFPASPTVF  232 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE---EEEEC--CSE--EEEEEEETTEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE---EEEEc--CCc--eeeccCCCcEE
Confidence            432222221  0   0123567899999999888874  578999998765432   22221  111  2223332 455


Q ss_pred             EEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccce
Q 018675          179 FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWR  258 (352)
Q Consensus       179 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  258 (352)
                      ++.+.|+.+.+.+.... .........+.   .+.......+.+.+++..++.....+.+.+.|.........   ..+.
T Consensus       233 v~~~~dG~~~~V~~~~~-~v~~~~~~~~~---v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~---~~~~  305 (426)
T 3c75_H          233 YMNCRDGSLARVDFADG-ETKVTNTEVFH---TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFR---APIE  305 (426)
T ss_dssp             EEEETTSSEEEEECCTT-CCEEEECCCCS---CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEEC---CCEE
T ss_pred             EEEcCCCCEEEEECCCC-cEEEEeeeeec---cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEe---eeee
Confidence            66667777766655211 10000000010   00011111246788888777667788898888642211000   0000


Q ss_pred             eeE--Ee-ecccCcceEEEEecCCc--eEEecC---------CCCeEEEEEccCCccccCcccceeeecccccCcceeEE
Q 018675          259 HLC--TI-SGYHDRTIFSVHWSREG--IIASGA---------ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV  324 (352)
Q Consensus       259 ~~~--~~-~~~~~~~i~~~~~~~~~--~~~s~~---------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  324 (352)
                      ...  .. .+........+.+++++  .+++..         ..+.+.+++......         +.... -......+
T Consensus       306 ~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv---------v~~I~-vg~~P~gi  375 (426)
T 3c75_H          306 ALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER---------INKIE-LGHEIDSI  375 (426)
T ss_dssp             SSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE---------EEEEE-EEEEECEE
T ss_pred             eccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE---------EEEEE-CCCCcCeE
Confidence            000  00 00000000112344443  233221         124577775433211         11111 11257899


Q ss_pred             EecCCCc-ceEEEecCCCeEEEEeecc
Q 018675          325 QWSPGER-RLLASASDDGMIKIWELAN  350 (352)
Q Consensus       325 ~~sp~~~-~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +|+||++ .++++...++.|.|+|+.+
T Consensus       376 a~spDg~~~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          376 NVSQDAEPLLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             EEccCCCEEEEEEcCCCCeEEEEECCC
Confidence            9999998 6666665799999999864

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.68  E-value=0.00015  Score=63.97  Aligned_cols=243  Identities=9%  Similarity=0.007  Sum_probs=133.8

Q ss_pred             EEEEccCCCCCCCccEEEEee----------CCCeEEEEecCCCceeeeeeee--eecceecceEEEEECCCCCEEEEEe
Q 018675           26 SLAWKPTAGVDGVAPVFASCS----------GDKTVRIWEQSASSRFWNCKAV--LEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s----------~D~~v~~w~~~~~~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      .+.++|+      +++++.+.          .++.|.+||..+.+........  -+..+...-..++|+|||++|.++.
T Consensus        70 ~i~~spD------g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n  143 (373)
T 2mad_H           70 NPVAAHS------GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ  143 (373)
T ss_pred             CeEECCC------CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEe
Confidence            7888987      45666664          3788999998765432221100  0000012235789999999999887


Q ss_pred             C--CCcEEEEEccCCceeeeEe-eccccCCeeEEEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEEEE--eecCccCe-
Q 018675           94 F--DATTCIWEDVGGDYECVAT-LEGHENEVKSVSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSV--LQGHAQDV-  166 (352)
Q Consensus        94 ~--d~~i~i~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~h~~~v-  166 (352)
                      .  ++.|.++| .+++.  +.. +.. .+   ++.+.|++ ..+++.+.|+++.++|. .++.......  .......+ 
T Consensus       144 ~~~~~~v~viD-~t~~~--~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~  215 (373)
T 2mad_H          144 FAAGPAVGLVV-QGGSS--DDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLL  215 (373)
T ss_pred             cCCCCeEEEEE-CCCCE--EeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCccee
Confidence            4  47899999 77643  333 321 11   24445554 45677888999999998 5543311110  00111111 


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeecc------CCCCcccEEEEEEcCCCCEEEEEeC------
Q 018675          167 KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES------NNGHSSTIWALSFNAKGDKLVSCSD------  234 (352)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~------~~~h~~~i~~l~~~~~~~~l~s~~~------  234 (352)
                      ....+.+++..++..+.++.+.+.|......   .....+...      ..........+.++|++..+.....      
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~---~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~  292 (373)
T 2mad_H          216 TQPAQANKSGRIVWPVYSGKILQADISAAGA---TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK  292 (373)
T ss_pred             ecceeEecCCEEEEEcCCceEEEEeccCCcc---eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccc
Confidence            2234555555444444677888887643211   111111100      0001122444778999887666543      


Q ss_pred             ----CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecC-CCCeEEEEEccC
Q 018675          235 ----DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGA-ADDSVQFFVESK  298 (352)
Q Consensus       235 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~-~d~~v~~~~~~~  298 (352)
                          ++.|.++|....+           ....+.  .......+.+++++  .++++. .++.+.+++...
T Consensus       293 ~~~~~~~V~VID~~t~~-----------vv~~i~--~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          293 LHAAAKEVTSVTGLVGQ-----------TSSQIS--LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             ccCCCCeEEEEECCCCE-----------EEEEEE--CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence                3578888875322           222222  12346778888876  355555 578999987643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.60  E-value=6.3e-05  Score=65.06  Aligned_cols=190  Identities=11%  Similarity=0.023  Sum_probs=111.3

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeec-ceecceEEEEECCCCCEEEEEeCC----
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE-MHTRTVRSCAWSPSGKLLATASFD----   95 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d----   95 (352)
                      ...+.++.|.|+      +.++++. .+ .|.+|+..++... ... .... .....++++.++|+|++.++...+    
T Consensus        89 ~~~v~~i~~~~d------g~l~v~~-~~-gl~~~d~~~g~~~-~~~-~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~  158 (326)
T 2ghs_A           89 PFMGSALAKISD------SKQLIAS-DD-GLFLRDTATGVLT-LHA-ELESDLPGNRSNDGRMHPSGALWIGTMGRKAET  158 (326)
T ss_dssp             SSCEEEEEEEET------TEEEEEE-TT-EEEEEETTTCCEE-EEE-CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCT
T ss_pred             CCcceEEEEeCC------CeEEEEE-CC-CEEEEECCCCcEE-EEe-eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCC
Confidence            357889999886      3555553 44 4888988665421 111 0100 112468899999999977755422    


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEE-EeeCCCcEEEEecC--CC-Ce--eEEEEEeecCccCeeEE
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIWEVM--PG-NE--FECVSVLQGHAQDVKMV  169 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~vwd~~--~~-~~--~~~~~~~~~h~~~v~~~  169 (352)
                      +...||...+++...   +..+......++|+|+++.++ +.+.++.|.+||+.  .+ ..  ......+.........+
T Consensus       159 ~~~~l~~~~~g~~~~---~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi  235 (326)
T 2ghs_A          159 GAGSIYHVAKGKVTK---LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGS  235 (326)
T ss_dssp             TCEEEEEEETTEEEE---EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEE
T ss_pred             CceEEEEEeCCcEEE---eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCee
Confidence            233444333333222   222334577899999998654 44557889999975  33 11  11222222223345678


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc-CCCCEEEEEe
Q 018675          170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN-AKGDKLVSCS  233 (352)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~~~l~s~~  233 (352)
                      .+.+++.+.++...++.|..|+...      .....+.    .+...+.+++|. +++..|..++
T Consensus       236 ~~d~~G~lwva~~~~~~v~~~d~~g------~~~~~i~----~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          236 VCDAEGHIWNARWGEGAVDRYDTDG------NHIARYE----VPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EECTTSCEEEEEETTTEEEEECTTC------CEEEEEE----CSCSBEEEEEEESTTSCEEEEEE
T ss_pred             EECCCCCEEEEEeCCCEEEEECCCC------CEEEEEE----CCCCCcEEEEEecCCCCEEEEEe
Confidence            8899998777766678899996521      1122222    233468999998 8877664443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.56  E-value=7e-06  Score=78.84  Aligned_cols=204  Identities=12%  Similarity=0.126  Sum_probs=110.7

Q ss_pred             cccCCeeEEEECCCCcEEEE-----eeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCc----
Q 018675          116 GHENEVKSVSWNASGTLLAT-----CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT----  186 (352)
Q Consensus       116 ~h~~~v~~v~~~~~~~~l~s-----~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~----  186 (352)
                      +|...+..++|+|+|++|+-     |+++.+|++||+..+.....  .+..  .....++|+ |++.|+.++.+..    
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCCEEEEEEecCccccc
Confidence            34456888899999998773     33446899999987653221  1111  112467899 9998888887743    


Q ss_pred             ---------EEEEecCCCCCCCceeEeeeeccCCC-CcccEEEEEEcCCCCEEEEEe----CCCcEEEEcCCccccccCC
Q 018675          187 ---------IKVWWAEDTDSDNWHCVQTISESNNG-HSSTIWALSFNAKGDKLVSCS----DDLTIKIWGADITRMQSGD  252 (352)
Q Consensus       187 ---------i~iw~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~l~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~  252 (352)
                               |.+|++...... -..+.    .... |.....++.++|+|++|+...    .++.|.++|++...     
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~-~~~v~----~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~-----  270 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQED-DRLVF----GAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN-----  270 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGG-CEEEE----SCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT-----
T ss_pred             ccccCCCcEEEEEECCCCccc-ceEEE----ecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC-----
Confidence                     788876543211 11111    1122 344577899999999875433    23478888864321     


Q ss_pred             CCccceeeEEeecccCcceEEEEecCCc-eEEecCCC---CeEEEEEccCCccccCcccceeeecccccCcceeEEEecC
Q 018675          253 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAAD---DSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP  328 (352)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp  328 (352)
                        ..+.   .+.. +..........+++ +++....+   ..+..++......   ....    ....|...+.  .|+|
T Consensus       271 --~~~~---~l~~-~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~---~~~~----~l~~~~~~~~--~~s~  335 (693)
T 3iuj_A          271 --APLL---TVQG-DLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP---AHWR----DLIPERQQVL--TVHS  335 (693)
T ss_dssp             --CCCE---EEEC-SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG---GGCE----EEECCCSSCE--EEEE
T ss_pred             --CceE---EEeC-CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc---cccE----EEecCCCCEE--EEEE
Confidence              0111   1111 11122222112233 33333332   4566665432111   0011    2234444454  8888


Q ss_pred             CCcceEEEecCCC--eEEEEeec
Q 018675          329 GERRLLASASDDG--MIKIWELA  349 (352)
Q Consensus       329 ~~~~~l~s~~~Dg--~i~iw~~~  349 (352)
                      ++..++++...|+  .|++|++.
T Consensus       336 ~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          336 GSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             ETTEEEEEEEETTEEEEEEECTT
T ss_pred             ECCEEEEEEEECCeeEEEEEECC
Confidence            8877776666676  47777654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.54  E-value=3.9e-08  Score=87.04  Aligned_cols=178  Identities=11%  Similarity=0.089  Sum_probs=92.2

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeecccc
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHE  118 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~  118 (352)
                      +..+++++.|+.|..||..+++..|+...       ..+.+..+..+++.+++++.|+.+..||..+++.  +..+..+.
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~--~w~~~~~~   79 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG--LTKLPFTI   79 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-------CCSCCCC-----CCEEECTTTCCEEEC-----CC--SEECSCCH
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC-------CCceecceEcCCCEEEEeCCCCEEEEEECCCCce--eeeeeccC
Confidence            46889999999999999999988776532       2344444556777888888999999999866643  12222111


Q ss_pred             C-CeeE-EEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 018675          119 N-EVKS-VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD  196 (352)
Q Consensus       119 ~-~v~~-v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~  196 (352)
                      . .+.+ ..+ ..+..+++++.|+.+..||...++.   +..+..+.    ...++|++..+++++.|+.+..||.....
T Consensus        80 ~~~~~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~---~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           80 PELVQASPCR-SSDGILYMGKKQDIWYVIDLLTGEK---QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             HHHHTTCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             ccccccCceE-ecCCEEEEEeCCCEEEEEECCCCcE---EEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCC
Confidence            1 1110 011 1345678888999999999876643   22222222    13456777888999999999999865432


Q ss_pred             CCCceeEeeeeccCCCCcccEEEEEEcCCC---CEEEEEeCCCcEEEEcCC
Q 018675          197 SDNWHCVQTISESNNGHSSTIWALSFNAKG---DKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       197 ~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~---~~l~s~~~dg~i~iwd~~  244 (352)
                       ..|...  ..        ......+.++.   ..++.++.||.+..||.+
T Consensus       152 -~~W~~~--~~--------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~  191 (369)
T 2hz6_A          152 -LRWNAT--YF--------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSE  191 (369)
T ss_dssp             -CCCEEE--EE--------EECCBCCCCCTTCCCCEEEEETSCEEEEECTT
T ss_pred             -EEEeEe--cc--------cccCccccCCccccceEEEECCCCEEEEEECC
Confidence             123211  10        01112233322   456778889999999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.45  E-value=5.7e-05  Score=65.83  Aligned_cols=205  Identities=11%  Similarity=0.027  Sum_probs=122.4

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeC-----CCeEEEEecCCCceeeeeeee-eecceecceEEEEECCCC-CEEEE
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSG-----DKTVRIWEQSASSRFWNCKAV-LEEMHTRTVRSCAWSPSG-KLLAT   91 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~-----D~~v~~w~~~~~~~~~~~~~~-~~~~h~~~v~~~~~s~~~-~~l~s   91 (352)
                      +|...+.++++.|+      +.++++-..     ++.|.+||+.+++........ ....+...+..+++++++ ..+++
T Consensus        64 ~~~~~p~gv~~d~~------g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt  137 (343)
T 2qe8_A           64 ITFDTVLGIKSDGN------GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS  137 (343)
T ss_dssp             CCCSCEEEEEECSS------SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEE
T ss_pred             cceeEeeEEEEcCC------CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEE
Confidence            46678999999886      345554333     578999998776422111100 000122356889999864 55566


Q ss_pred             Ee---CCCcEEEEEccCCceeeeEeeccc-----------------------------cCCeeEEEECCCCcEEEEeeCC
Q 018675           92 AS---FDATTCIWEDVGGDYECVATLEGH-----------------------------ENEVKSVSWNASGTLLATCGRD  139 (352)
Q Consensus        92 ~~---~d~~i~i~~~~~~~~~~~~~~~~h-----------------------------~~~v~~v~~~~~~~~l~s~~~d  139 (352)
                      ..   .++.|.+||..+++.  ...+.+|                             ...+..++|+|+++.|+.+..+
T Consensus       138 d~~~~~~~~i~v~d~~~g~~--~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~  215 (343)
T 2qe8_A          138 DPAPDDKAALIRVDLQTGLA--ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH  215 (343)
T ss_dssp             ECCSGGGCEEEEEETTTCCE--EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS
T ss_pred             cCccCCCCeEEEEECCCCCE--EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC
Confidence            55   678899999765542  2222221                             1236789999999888877766


Q ss_pred             CcEEEEecC-----CCC--eeE---EEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeecc
Q 018675          140 KSVWIWEVM-----PGN--EFE---CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES  209 (352)
Q Consensus       140 ~~v~vwd~~-----~~~--~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  209 (352)
                      +. ++|.+.     .+.  ...   .+. ..++......+++++++.++++...++.|.+|+....   ..   ..+.. 
T Consensus       216 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G---~~---~~~~~-  286 (343)
T 2qe8_A          216 ST-SMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR---AY---KLLVT-  286 (343)
T ss_dssp             CS-EEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT---EE---EEEEE-
T ss_pred             CC-eEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC---CE---EEEEE-
Confidence            53 445432     110  000   000 1122234556889999998888888999999986221   11   12211 


Q ss_pred             CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          210 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       210 ~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iw  241 (352)
                       ..+...+.+++|.+++.++++.+..+++.+|
T Consensus       287 -~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          287 -DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             -CGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             -CCceecCCeeEECCCCcEEEEeCcccccccc
Confidence             1124568899999999888887765555444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.45  E-value=2.3e-05  Score=68.80  Aligned_cols=274  Identities=10%  Similarity=-0.048  Sum_probs=141.3

Q ss_pred             cEEEEeeCCC----eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe----------CCCcEEEEEccC
Q 018675           40 PVFASCSGDK----TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS----------FDATTCIWEDVG  105 (352)
Q Consensus        40 ~~l~s~s~D~----~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~i~i~~~~~  105 (352)
                      ..+++...++    +|.+.|..+.+...+..    . -..+  .+.++|||+.+.++.          .++.|.+||..+
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~----v-G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T  105 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL----G-AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT  105 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEE----E-CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEe----C-CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            4566666566    78899988775432221    1 1124  699999999888775          367899999877


Q ss_pred             CceeeeEeeccc-------cCCeeEEEECCCCcEEEEeeC--CCcEEE--EecCCCCeeEEEEEeecCccCeeEEEEcCC
Q 018675          106 GDYECVATLEGH-------ENEVKSVSWNASGTLLATCGR--DKSVWI--WEVMPGNEFECVSVLQGHAQDVKMVQWHPT  174 (352)
Q Consensus       106 ~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~~~--d~~v~v--wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (352)
                      .+.  +.++.-.       ......+.++|+|++++.+..  +..+.+  +|...   ...+..  +   .+  ....|+
T Consensus       106 ~~v--v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v--~---~~--~~~~p~  173 (368)
T 1mda_H          106 FLP--IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS--A---SC--FHIHPG  173 (368)
T ss_dssp             CCE--EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC--S---SC--CCCEEE
T ss_pred             CCE--EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC--C---Cc--eEEccC
Confidence            643  4443211       123568999999999888864  467888  88743   121111  1   11  112343


Q ss_pred             C-CEEEEEeCCCcEEEEecCCCCCCCceeEeee-eccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccc--ccc
Q 018675          175 M-DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI-SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR--MQS  250 (352)
Q Consensus       175 ~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~  250 (352)
                      + ..+++.+.|+.+.+.+.........+..... .....+ ..+.   . .+++..++-.+. +.+.+.|+....  ...
T Consensus       174 g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg-~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~  247 (368)
T 1mda_H          174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS-SQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKA  247 (368)
T ss_dssp             ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC-SCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEEC
T ss_pred             CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCC-CCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEE
Confidence            3 3445566777777766543111000000000 000011 1232   2 555555555555 888888864211  100


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCCc--eEEecC---C-----CCeEEEEEccCCccccCcccceeeecccccCcc
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGA---A-----DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD  320 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~---~-----d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  320 (352)
                      ......-...  ..+........+.+++++  .+++..   .     ++.+.+++.....         .+...... ..
T Consensus       248 ~~~~~~~~~~--~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~---------vv~~i~vg-~~  315 (368)
T 1mda_H          248 AIDGNESGRK--ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---------TSGPISNG-HD  315 (368)
T ss_dssp             CCCSSCTHHH--HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---------EEECCEEE-EE
T ss_pred             EEEecccccc--ccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe---------EEEEEECC-CC
Confidence            0000000000  000000000013445543  333322   1     2344466543321         11212111 25


Q ss_pred             eeEEEecCCCcceEEEec-CCCeEEEEeecc
Q 018675          321 VNSVQWSPGERRLLASAS-DDGMIKIWELAN  350 (352)
Q Consensus       321 i~~~~~sp~~~~~l~s~~-~Dg~i~iw~~~~  350 (352)
                      ...++|+||+++++++.. .+++|.|+|+.+
T Consensus       316 p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          316 SDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             cceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            889999999987888888 699999999865

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.42  E-value=4.1e-05  Score=68.10  Aligned_cols=197  Identities=12%  Similarity=0.158  Sum_probs=119.5

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeee------cceecceEEEEECCCCCEEEEEeCC------CcEEEEEccCC
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLE------EMHTRTVRSCAWSPSGKLLATASFD------ATTCIWEDVGG  106 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~------~~h~~~v~~~~~s~~~~~l~s~~~d------~~i~i~~~~~~  106 (352)
                      ..+++++..+.+|.++|..+.....+....++      +.-...-..+..+|+| +++++..+      +.+.++|..+.
T Consensus        96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~  174 (462)
T 2ece_A           96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF  174 (462)
T ss_dssp             CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred             CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence            35677888899999999864311112222221      1111234567789999 77776655      68999887765


Q ss_pred             ceeeeEeec--cccC-CeeEEEECCCCcEEEEee-------------------CCCcEEEEecCCCCeeEEEEEeecC--
Q 018675          107 DYECVATLE--GHEN-EVKSVSWNASGTLLATCG-------------------RDKSVWIWEVMPGNEFECVSVLQGH--  162 (352)
Q Consensus       107 ~~~~~~~~~--~h~~-~v~~v~~~~~~~~l~s~~-------------------~d~~v~vwd~~~~~~~~~~~~~~~h--  162 (352)
                      +  .+..+.  .... --..+.|+|+++.+++..                   .+.+|.+||+...+   .+..+.-.  
T Consensus       175 ~--v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k---~~~tI~vg~~  249 (462)
T 2ece_A          175 E--PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK---RIHSLTLGEE  249 (462)
T ss_dssp             C--EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE---EEEEEESCTT
T ss_pred             e--EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc---EeeEEecCCC
Confidence            4  344443  1211 123578899999988885                   36899999997542   23333321  


Q ss_pred             ccCeeEEEE--cCCCCEEEEEeC------CCcEEEEecCCCCCCCceeEeeeeccC---CC-----------CcccEEEE
Q 018675          163 AQDVKMVQW--HPTMDVLFSCSY------DNTIKVWWAEDTDSDNWHCVQTISESN---NG-----------HSSTIWAL  220 (352)
Q Consensus       163 ~~~v~~~~~--~~~~~~l~s~~~------d~~i~iw~~~~~~~~~~~~~~~~~~~~---~~-----------h~~~i~~l  220 (352)
                      ......+.|  +|++++++++.+      +++|.+|....   ..+...+.+....   .+           -......+
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~---g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED---GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET---TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC---CceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence            122345555  999998777764      55777765432   3344333321000   00           02346778


Q ss_pred             EEcCCCCEEEEEe-CCCcEEEEcCC
Q 018675          221 SFNAKGDKLVSCS-DDLTIKIWGAD  244 (352)
Q Consensus       221 ~~~~~~~~l~s~~-~dg~i~iwd~~  244 (352)
                      .++|||++|..+. ..+.|.+||+.
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEECS
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEec
Confidence            9999999877665 46899999874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.36  E-value=0.00023  Score=62.64  Aligned_cols=246  Identities=10%  Similarity=0.069  Sum_probs=133.1

Q ss_pred             EEECCCCCEEEEEeC-----CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEee----------CCCcEEE
Q 018675           80 CAWSPSGKLLATASF-----DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG----------RDKSVWI  144 (352)
Q Consensus        80 ~~~s~~~~~l~s~~~-----d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~v~v  144 (352)
                      ....|+++.+.+...     ++.+.+.|..+.+  .+..+..-..+ . +.++|+|++++.+.          .++.|.+
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~--v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv  113 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEV  113 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--EEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCe--EEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence            345789988777665     5789999877654  34444432333 4 99999999877765          3678999


Q ss_pred             EecCCCCeeEEEEEeec-C---ccCeeEEEEcCCCCEEEEEeC--CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEE
Q 018675          145 WEVMPGNEFECVSVLQG-H---AQDVKMVQWHPTMDVLFSCSY--DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW  218 (352)
Q Consensus       145 wd~~~~~~~~~~~~~~~-h---~~~v~~~~~~~~~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~  218 (352)
                      ||.........+..-.+ +   ...-..+.++|++++++++..  ++.|.++|....     +...++..  .+    . 
T Consensus       114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~-----~vv~tI~v--~g----~-  181 (386)
T 3sjl_D          114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-----AFKRMLDV--PD----C-  181 (386)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-----EEEEEEEC--CS----E-
T ss_pred             EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-----cEEEEEEC--CC----c-
Confidence            99876654333322110 0   113456889999999888864  688999976543     33344421  11    1 


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEcCCc-cccccCCCCccceeeEEeecccCcceE-EEEe-cCCceEEecCCCCeEEEEE
Q 018675          219 ALSFNAKGDKLVSCSDDLTIKIWGADI-TRMQSGDGYASWRHLCTISGYHDRTIF-SVHW-SREGIIASGAADDSVQFFV  295 (352)
Q Consensus       219 ~l~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~-~~~~~~~s~~~d~~v~~~~  295 (352)
                      ...+....+.+++.+.||.+.+.++.. .+...       ... .........++ ...+ .+++.++-.+.++.+++.+
T Consensus       182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-------~~~-~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d  253 (386)
T 3sjl_D          182 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-------THT-EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID  253 (386)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-------EEC-CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred             ceeecCCCceeEEECCCCCEEEEECCCCCeEEE-------eec-ceeccccccccccceeEcCCCcEEEEeCCCEEEEEE
Confidence            122322345667778888888887653 22100       000 00000011111 1133 2456444455578888887


Q ss_pred             ccCCccccCcccceeee----cccccCcceeEEEecCCCcceEEEecC---------CCeEEEEeecc
Q 018675          296 ESKDDLIDGPSYKMLLK----KEKAHDMDVNSVQWSPGERRLLASASD---------DGMIKIWELAN  350 (352)
Q Consensus       296 ~~~~~~~~~~~~~~~~~----~~~~h~~~i~~~~~sp~~~~~l~s~~~---------Dg~i~iw~~~~  350 (352)
                      .......-... ..+..    ..-..-..+..++++|++.+++++-..         .+.|-+.|+.+
T Consensus       254 ~~~~~~~v~~~-~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t  320 (386)
T 3sjl_D          254 LSSGDAKFLPA-VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT  320 (386)
T ss_dssp             CTTSSCEECCC-EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             CCCCcceeecc-eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence            64322100000 00000    000112334567788988888876432         24566666644

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.32  E-value=0.00025  Score=63.09  Aligned_cols=186  Identities=8%  Similarity=0.146  Sum_probs=111.8

Q ss_pred             EEEEeeCC------CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe-------------------CC
Q 018675           41 VFASCSGD------KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS-------------------FD   95 (352)
Q Consensus        41 ~l~s~s~D------~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-------------------~d   95 (352)
                      +++++..+      +.+.+.|..+.+...+..  ....-...-+.+.|+|+++.+++..                   ..
T Consensus       150 i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~--~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~  227 (462)
T 2ece_A          150 IYISALGNEEGEGPGGILMLDHYSFEPLGKWE--IDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYG  227 (462)
T ss_dssp             EEEEEEEETTSCSCCEEEEECTTTCCEEEECC--SBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSC
T ss_pred             EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEc--cCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccC
Confidence            77787766      789999988765322211  0011112235678899999888874                   36


Q ss_pred             CcEEEEEccCCceeeeEeecc--ccCCeeEEEE--CCCCcEEEEee------CCCcEEEEecCCCCeeEEEEEe--ecC-
Q 018675           96 ATTCIWEDVGGDYECVATLEG--HENEVKSVSW--NASGTLLATCG------RDKSVWIWEVMPGNEFECVSVL--QGH-  162 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~--h~~~v~~v~~--~~~~~~l~s~~------~d~~v~vwd~~~~~~~~~~~~~--~~h-  162 (352)
                      .+|.+||..+.+  .+.++.-  .......+.|  +|++++++.+.      .+++|.+|.... ........+  ... 
T Consensus       228 d~V~v~D~~~~k--~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~  304 (462)
T 2ece_A          228 NRIHFWDLRKRK--RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEP  304 (462)
T ss_dssp             CEEEEEETTTTE--EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEE
T ss_pred             CEEEEEECCCCc--EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCcc
Confidence            899999987653  3334432  1234556666  99999866665      567888776543 222222211  110 


Q ss_pred             ---------------ccCeeEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCCCceeEeeeeccCC----CC------ccc
Q 018675          163 ---------------AQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNN----GH------SST  216 (352)
Q Consensus       163 ---------------~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~----~h------~~~  216 (352)
                                     ......+.++|++++|.++.. .+.|.+|++.+..  ..+....+...-.    .|      ...
T Consensus       305 v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~--~~~lv~~I~tGG~~~~~~~~~G~~~~gg  382 (462)
T 2ece_A          305 LEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPF--KPVLTGKVKLGGIFHRADHPAGHKLTGA  382 (462)
T ss_dssp             CCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTT--SCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred             ccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCC--CcEEEEEEEeCCeeccccccccccCCCC
Confidence                           123567889999998876655 6789999986432  2233333321100    00      012


Q ss_pred             EEEEEEcCCCCEEEEEe
Q 018675          217 IWALSFNAKGDKLVSCS  233 (352)
Q Consensus       217 i~~l~~~~~~~~l~s~~  233 (352)
                      -..+.++|+|++|.++.
T Consensus       383 Pr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          383 PQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCEEECTTSSEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEc
Confidence            45688999999888775

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.32  E-value=0.0012  Score=56.89  Aligned_cols=285  Identities=8%  Similarity=0.115  Sum_probs=143.6

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEE
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCI  100 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i  100 (352)
                      ...+.+|.|.+.+      ..++ ++.++.| +.. ..+.+.|+............+.++.|++ ++.++ ++.++.+..
T Consensus        35 ~~~~~~v~~~~~~------~~~~-~G~~g~i-~~s-~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~  103 (327)
T 2xbg_A           35 TATILDMSFIDRH------HGWL-VGVNATL-MET-RDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH  103 (327)
T ss_dssp             SSCEEEEEESSSS------CEEE-EETTTEE-EEE-SSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE
T ss_pred             CCcEEEEEECCCC------cEEE-EcCCCeE-EEe-CCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE
Confidence            4478899887542      3555 5667765 233 3333334432211111234678888986 44444 455665544


Q ss_pred             EEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEE
Q 018675          101 WEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS  180 (352)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  180 (352)
                      -.+....+..+.....+.+.+..+.+.+++..++.+ .++.|.. ....+.....+.  ......+..+.+.|++.+++.
T Consensus       104 S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~  179 (327)
T 2xbg_A          104 TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAV  179 (327)
T ss_dssp             ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEE
T ss_pred             ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEee--cCCCcceEEEEEcCCCcEEEE
Confidence            332223333222211234557778776666655544 4564422 112244444332  234456788899998877655


Q ss_pred             EeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceee
Q 018675          181 CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHL  260 (352)
Q Consensus       181 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  260 (352)
                      + .++.+..-+  +.....|.....      .....+..+.+.+++..++ .+.+|.+.+.+.+.        ...|...
T Consensus       180 g-~~G~~~~S~--d~gG~tW~~~~~------~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~--------G~tW~~~  241 (327)
T 2xbg_A          180 S-SRGSFYSTW--EPGQTAWEPHNR------TTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDN--------SENWGEL  241 (327)
T ss_dssp             E-TTSSEEEEE--CTTCSSCEEEEC------CSSSCEEEEEECTTSCEEE-EETTTEEEEEETTE--------EEEECCC
T ss_pred             E-CCCcEEEEe--CCCCCceeECCC------CCCCccceeEECCCCCEEE-EeCCceEEEecCCC--------CCeeEec
Confidence            5 445443321  111234544321      2345688899999987664 45678777663210        1122211


Q ss_pred             EEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCC
Q 018675          261 CTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDD  340 (352)
Q Consensus       261 ~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~D  340 (352)
                      ..-.......+..+.+.+++.+.+++.++.+.. ....     +.....+ .....+...++++.|.++++ + +.++.+
T Consensus       242 ~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~-S~Dg-----G~tW~~~-~~~~~~~~~~~~v~~~~~~~-~-~~~G~~  312 (327)
T 2xbg_A          242 LSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLC-SQDG-----GQTWQQD-VDVKKVPSNFYKILFFSPDQ-G-FILGQK  312 (327)
T ss_dssp             BCTTSSCCSCEEEEEESSSSCEEEEESTTCEEE-ESST-----TSSCEEC-GGGTTSSSCCCEEEEEETTE-E-EEECST
T ss_pred             cCCcccCCcceEEEEecCCCEEEEEeCCCeEEE-eCCC-----CcccEEc-CccCCCCCCeEEEEEECCCc-e-EEEcCC
Confidence            100000122466777776665555555676633 2211     1122211 11112335678899976553 4 467789


Q ss_pred             CeEEEEe
Q 018675          341 GMIKIWE  347 (352)
Q Consensus       341 g~i~iw~  347 (352)
                      |.|.-++
T Consensus       313 G~i~~~~  319 (327)
T 2xbg_A          313 GILLRYV  319 (327)
T ss_dssp             TEEEEEC
T ss_pred             ceEEEEc
Confidence            9876654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.30  E-value=0.00038  Score=66.60  Aligned_cols=150  Identities=12%  Similarity=0.062  Sum_probs=86.6

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC---CCCEEEEEe-----CCCcEEEEEccCCceeee
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP---SGKLLATAS-----FDATTCIWEDVGGDYECV  111 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~-----~d~~i~i~~~~~~~~~~~  111 (352)
                      ..++.++.|+.|..+|..+++..|+.......   .....+..+|   ++..++..+     .++.+..||..+++..=.
T Consensus       122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~---~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  198 (689)
T 1yiq_A          122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADH---KRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWR  198 (689)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCSCT---TSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CEEEEEccCCEEEEEECCCCCEeeeecCcCCC---CCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence            56788889999999999999888875432000   0001111122   454444322     368899999887753211


Q ss_pred             Eeecc-----------------------------ccCCeeEEEECCCCcEEEEeeCCCc-------------------EE
Q 018675          112 ATLEG-----------------------------HENEVKSVSWNASGTLLATCGRDKS-------------------VW  143 (352)
Q Consensus       112 ~~~~~-----------------------------h~~~v~~v~~~~~~~~l~s~~~d~~-------------------v~  143 (352)
                      .....                             .......+++.|+..+++.+..++.                   |.
T Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            11100                             0011125678888888888877763                   89


Q ss_pred             EEecCCCCeeEEEEEeec--Cc-------cCeeEEEEcCCCC---EEEEEeCCCcEEEEecCCC
Q 018675          144 IWEVMPGNEFECVSVLQG--HA-------QDVKMVQWHPTMD---VLFSCSYDNTIKVWWAEDT  195 (352)
Q Consensus       144 vwd~~~~~~~~~~~~~~~--h~-------~~v~~~~~~~~~~---~l~s~~~d~~i~iw~~~~~  195 (352)
                      .+|...++.   +..++.  |.       ..........++.   .++.++.+|.+.++|....
T Consensus       279 AlD~~TG~~---~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG  339 (689)
T 1yiq_A          279 AVNADTGEY---VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG  339 (689)
T ss_dssp             EEETTTCCE---EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             EEEccCCce---eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence            999887753   233322  21       1122222223443   6788889999999986543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.26  E-value=0.00017  Score=64.50  Aligned_cols=201  Identities=12%  Similarity=0.096  Sum_probs=107.1

Q ss_pred             EEEEccCCCCCCCccEEEEee----------CCCeEEEEecCCCceeeeeeee-eecc-eecceEEEEECCCCCEEEEEe
Q 018675           26 SLAWKPTAGVDGVAPVFASCS----------GDKTVRIWEQSASSRFWNCKAV-LEEM-HTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s----------~D~~v~~w~~~~~~~~~~~~~~-~~~~-h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      .+.++|+.      +.++.+.          .++.|.++|..+.+.......- -+.. .......++|+|||+++.++.
T Consensus       122 gia~SpDg------k~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n  195 (426)
T 3c75_H          122 HPVAAEDG------SFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQ  195 (426)
T ss_dssp             EEEECTTS------SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEE
T ss_pred             ceEECCCC------CEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEe
Confidence            78899973      4455443          4779999999876543222110 0000 011234578999999998887


Q ss_pred             C--CCcEEEEEccCCceeeeEeecccc-------CCeeEEEECCCCcEEEE-----------------------------
Q 018675           94 F--DATTCIWEDVGGDYECVATLEGHE-------NEVKSVSWNASGTLLAT-----------------------------  135 (352)
Q Consensus        94 ~--d~~i~i~~~~~~~~~~~~~~~~h~-------~~v~~v~~~~~~~~l~s-----------------------------  135 (352)
                      .  ++.+.+.|..+.+.  +..+.--.       +.-.-+.++++|++++.                             
T Consensus       196 ~~~~~~VsVID~~t~kv--v~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~  273 (426)
T 3c75_H          196 FSPAPAVGVVDLEGKTF--DRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS  273 (426)
T ss_dssp             CSSSCEEEEEETTTTEE--EEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC
T ss_pred             cCCCCeEEEEECCCCeE--EEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec
Confidence            4  57899998776543  22222100       00011223334433322                             


Q ss_pred             --------eeCCCcEEEEecCCCCeeEEEEEee---c-------CccCeeEEEEcCCCCEEEEEeC----------CCcE
Q 018675          136 --------CGRDKSVWIWEVMPGNEFECVSVLQ---G-------HAQDVKMVQWHPTMDVLFSCSY----------DNTI  187 (352)
Q Consensus       136 --------~~~d~~v~vwd~~~~~~~~~~~~~~---~-------h~~~v~~~~~~~~~~~l~s~~~----------d~~i  187 (352)
                              .+..+++.+.|+.... ...+..+.   .       .......+.++|++..++++..          ++.|
T Consensus       274 ~dg~~~~~~s~~g~V~ViD~~~~~-~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~V  352 (426)
T 3c75_H          274 LRSGRLVWPTYTGKIFQADLTAEG-ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFV  352 (426)
T ss_dssp             TTTCEEEEEBTTSEEEEEEECSSC-EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeccCCc-eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEE
Confidence                    2223333333332111 00000000   0       0011122678888877666532          3468


Q ss_pred             EEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-EEEEEe-CCCcEEEEcCCc
Q 018675          188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCS-DDLTIKIWGADI  245 (352)
Q Consensus       188 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s~~-~dg~i~iwd~~~  245 (352)
                      .+.|....     +.+.++..     ....+.+.|+|+++ ++++.. .++.|.++|+..
T Consensus       353 sVID~~T~-----kvv~~I~v-----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          353 VVLNAETG-----ERINKIEL-----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             EEEETTTC-----CEEEEEEE-----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             EEEECCCC-----eEEEEEEC-----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence            88875432     33444421     23477899999998 777777 599999999753

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.17  E-value=0.0014  Score=62.67  Aligned_cols=153  Identities=8%  Similarity=0.008  Sum_probs=86.1

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC------CCcEEEEEccCCceeeeE
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF------DATTCIWEDVGGDYECVA  112 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------d~~i~i~~~~~~~~~~~~  112 (352)
                      +..++.++.|+.|..+|..+++..|+............+.+.-.-.++ .++.++.      ++.+..+|..+++..=..
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            356788889999999999999888875421000000111110000134 4444432      688999998877532111


Q ss_pred             eecccc------------------------------CCeeEEEECCCCcEEEEeeCCC-------------------cEE
Q 018675          113 TLEGHE------------------------------NEVKSVSWNASGTLLATCGRDK-------------------SVW  143 (352)
Q Consensus       113 ~~~~h~------------------------------~~v~~v~~~~~~~~l~s~~~d~-------------------~v~  143 (352)
                      ......                              .....+++.|++.+++.+..++                   +|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            111100                              1113567788888888776654                   488


Q ss_pred             EEecCCCCeeEEEEEeec--Cc-------cCeeEEEEcCCC---CEEEEEeCCCcEEEEecCCC
Q 018675          144 IWEVMPGNEFECVSVLQG--HA-------QDVKMVQWHPTM---DVLFSCSYDNTIKVWWAEDT  195 (352)
Q Consensus       144 vwd~~~~~~~~~~~~~~~--h~-------~~v~~~~~~~~~---~~l~s~~~d~~i~iw~~~~~  195 (352)
                      .+|...++.   +..++.  |.       .....+....++   ..++.++.+|.+.++|....
T Consensus       287 AlD~~TG~~---~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG  347 (677)
T 1kb0_A          287 ALDPDTGKY---KWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG  347 (677)
T ss_dssp             EECTTTCCE---EEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             EEECCCCCE---EEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence            889876653   222221  21       112223333456   57888899999999976543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.16  E-value=0.00046  Score=59.25  Aligned_cols=217  Identities=12%  Similarity=0.012  Sum_probs=120.1

Q ss_pred             CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccC
Q 018675           86 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD  165 (352)
Q Consensus        86 ~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~  165 (352)
                      +..+..++.++.+..++.. +..  ..........+.++...+++.+ ..++.++.+..+|.. +..   ..........
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~~g~l-~vgt~~~~l~~~d~~-g~~---~~~~~~~~~~  178 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTE--KWRFKTKKAIYATPIVSEDGTI-YVGSNDNYLYAINPD-GTE---KWRFKTNDAI  178 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCE--EEEEECSSCCCSCCEECTTSCE-EEECTTSEEEEECTT-SCE---EEEEECSSCC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCE--EEEEcCCCceeeeeEEcCCCEE-EEEcCCCEEEEECCC-CCE---eEEEecCCCc
Confidence            4556677888889988866 432  2223333445666777777764 446677889999976 432   2223333344


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          166 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       166 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      +.++...+++.+. .++  +.+..++ ....     ......    .....+.++...++|...+ ++.++.+..++.+.
T Consensus       179 ~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~-----~~~~~~----~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~~g  244 (330)
T 3hxj_A          179 TSAASIGKDGTIY-FGS--DKVYAIN-PDGT-----EKWNFY----AGYWTVTRPAISEDGTIYV-TSLDGHLYAINPDG  244 (330)
T ss_dssp             CSCCEECTTCCEE-EES--SSEEEEC-TTSC-----EEEEEC----CSSCCCSCCEECTTSCEEE-EETTTEEEEECTTS
T ss_pred             eeeeEEcCCCEEE-EEe--CEEEEEC-CCCc-----EEEEEc----cCCcceeceEECCCCeEEE-EcCCCeEEEECCCC
Confidence            5566666666644 444  7788886 2211     111111    1224466777888876544 55677777776421


Q ss_pred             cccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEE
Q 018675          246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ  325 (352)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  325 (352)
                      ..        .|.    +.. ....+..+...+++.+..++.++.+..++.... .         +.........+.++.
T Consensus       245 ~~--------~~~----~~~-~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~-~---------~~~~~~~~~~~~~~~  301 (330)
T 3hxj_A          245 TE--------KWR----FKT-GKRIESSPVIGNTDTIYFGSYDGHLYAINPDGT-E---------KWNFETGSWIIATPV  301 (330)
T ss_dssp             CE--------EEE----EEC-SSCCCSCCEECTTSCEEEECTTCEEEEECTTSC-E---------EEEEECSSCCCSCCE
T ss_pred             CE--------eEE----eeC-CCCccccceEcCCCeEEEecCCCCEEEECCCCc-E---------EEEEEcCCccccceE
Confidence            11        111    110 111112233455677777888878877753211 1         111111234567777


Q ss_pred             ecCCCcceEEEecCCCeEEEEeec
Q 018675          326 WSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       326 ~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ..+++. ++ .++.+|.+++....
T Consensus       302 ~d~~g~-l~-~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          302 IDENGT-IY-FGTRNGKFYALFNL  323 (330)
T ss_dssp             ECTTCC-EE-EECTTSCEEEEEC-
T ss_pred             EcCCCE-EE-EEcCCCeEEEEecc
Confidence            777775 44 48889999887654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.15  E-value=0.0013  Score=60.66  Aligned_cols=241  Identities=9%  Similarity=-0.017  Sum_probs=129.8

Q ss_pred             CCCEEEEEeC-CCcEEEEEccCCceeeeEeeccccCCeeEEEE-C-CCCcEEEEee------------------CCCcEE
Q 018675           85 SGKLLATASF-DATTCIWEDVGGDYECVATLEGHENEVKSVSW-N-ASGTLLATCG------------------RDKSVW  143 (352)
Q Consensus        85 ~~~~l~s~~~-d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~-~-~~~~~l~s~~------------------~d~~v~  143 (352)
                      ||+++..... ++.|.+.|..+.+...+..+. ....+..+++ . |++.+++.++                  .++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            7887766655 456888888766433333443 2345788888 5 8999888774                  345788


Q ss_pred             EEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCC---------------cEEEE------------------
Q 018675          144 IWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN---------------TIKVW------------------  190 (352)
Q Consensus       144 vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---------------~i~iw------------------  190 (352)
                      +.|....+   ....+.--. +-..++.+|++.++++.+.+.               .+.+.                  
T Consensus       179 vID~~t~~---v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          179 AVDADKWE---VAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EEETTTTE---EEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEECCCCe---EEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            88876432   222222111 234567899999998888654               13333                  


Q ss_pred             -----ecCCCCCCCcee-EeeeeccCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEcCCccccccCCCCccceeeEEe
Q 018675          191 -----WAEDTDSDNWHC-VQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQSGDGYASWRHLCTI  263 (352)
Q Consensus       191 -----~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  263 (352)
                           |.....   ... ...+...     ....++.++|||++++.++ .+++|.++|+...+......+..-.... .
T Consensus       255 ~V~VID~~~~~---~~~~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~-~  325 (595)
T 1fwx_A          255 GVKVVDGRKEA---SSLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV-A  325 (595)
T ss_dssp             TEEEEECSGGG---CCSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE-E
T ss_pred             cEEEEeCcccC---CceeEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE-E
Confidence                 222100   000 1112111     1233588999999876554 6889999998643210000000000000 0


Q ss_pred             ecccCcceEEEEecCCce-EEecCCCCeEEEEEccCCc-cccCcccceeeeccc-----ccCcceeEEEecCCCcceEEE
Q 018675          264 SGYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDD-LIDGPSYKMLLKKEK-----AHDMDVNSVQWSPGERRLLAS  336 (352)
Q Consensus       264 ~~~~~~~i~~~~~~~~~~-~~s~~~d~~v~~~~~~~~~-~~~~~~~~~~~~~~~-----~h~~~i~~~~~sp~~~~~l~s  336 (352)
                      ...-......+.|++++. +.+..-++.+..|+..... .+.+.....++.+..     +|...-..++++|||++++++
T Consensus       326 ~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          326 EPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             CCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             EcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence            111234577788898884 4467778899999764310 000111112233332     332222344678999887765


Q ss_pred             ecC
Q 018675          337 ASD  339 (352)
Q Consensus       337 ~~~  339 (352)
                      ..-
T Consensus       406 Nk~  408 (595)
T 1fwx_A          406 SKF  408 (595)
T ss_dssp             ESC
T ss_pred             CCC
Confidence            543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.12  E-value=0.0019  Score=53.71  Aligned_cols=203  Identities=10%  Similarity=0.095  Sum_probs=111.8

Q ss_pred             eeEEEECCCCcEEEEeeC--CCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE-EEeCCCcEEEEecCCCCC
Q 018675          121 VKSVSWNASGTLLATCGR--DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDS  197 (352)
Q Consensus       121 v~~v~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~iw~~~~~~~  197 (352)
                      ...+.|++++.++++.+.  +++|.+.|+..++....+. +..+. ....+++.  +..|+ +...++.+.++|...   
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t---   95 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-MDDSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRT---   95 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTT---
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCC---
Confidence            578999998766665553  5799999998765433222 22221 22234444  44444 445678899997543   


Q ss_pred             CCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecc-c---CcceEE
Q 018675          198 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY-H---DRTIFS  273 (352)
Q Consensus       198 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~i~~  273 (352)
                        .+.+.++... .++.   +.  ++++|..+..+..+++|.++|....+.           ...+... .   -..+..
T Consensus        96 --~~v~~~i~~g-~~~g---~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v-----------~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           96 --LSNIKNFTHQ-MKDG---WG--LATDGKILYGSDGTSILYEIDPHTFKL-----------IKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             --TEEEEEEECC-SSSC---CE--EEECSSSEEEECSSSEEEEECTTTCCE-----------EEEEECEETTEECCCEEE
T ss_pred             --CcEEEEEECC-CCCe---EE--EEECCCEEEEECCCCeEEEEECCCCcE-----------EEEEEECCCCccccccee
Confidence              2344444321 1221   23  445666666555688999998754221           1111110 0   112445


Q ss_pred             EEecCCceEEecCCCCeEEEEEccCCccccCcccceeeec--cccc--CcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          274 VHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK--EKAH--DMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       274 ~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~--~~~h--~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      +.+..+..++.....+.|.+.+.....+........+...  ...+  ..-.+.++|+|+++++++|+.....|.+-++.
T Consensus       157 le~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          157 LEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             EEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             EEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            5555333445555567788876654332211100000000  0001  13568999999998899999999998887764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.07  E-value=0.0042  Score=53.30  Aligned_cols=208  Identities=13%  Similarity=0.090  Sum_probs=116.1

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCce-eeeeeeee------------e-cceecceEEEEE
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSR-FWNCKAVL------------E-EMHTRTVRSCAW   82 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~-~~~~~~~~------------~-~~h~~~v~~~~~   82 (352)
                      +.|....-.+++|.|+      +.++.++..++.|..|+..+... .+......            . .........+++
T Consensus        14 ~~g~~~~p~~i~~d~~------g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~   87 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDST------NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY   87 (322)
T ss_dssp             EECSSSCCCCEECCTT------CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE
T ss_pred             cCCccCCceEEEEcCC------CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEE
Confidence            3343334456778775      35577777889999998765321 11100000            0 001134688999


Q ss_pred             CC-CCCEEEEEeCCCcEEEEEccCCceeeeEe-ecc-ccCCeeEEEECC-CCcEEEEeeC-----------------CCc
Q 018675           83 SP-SGKLLATASFDATTCIWEDVGGDYECVAT-LEG-HENEVKSVSWNA-SGTLLATCGR-----------------DKS  141 (352)
Q Consensus        83 s~-~~~~l~s~~~d~~i~i~~~~~~~~~~~~~-~~~-h~~~v~~v~~~~-~~~~l~s~~~-----------------d~~  141 (352)
                      .+ +|++++ +...+.+..++..++....+.. ..+ .....+.+++.+ +|.+.++-..                 ++.
T Consensus        88 ~~~~g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~  166 (322)
T 2fp8_A           88 NLQNNQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR  166 (322)
T ss_dssp             ETTTTEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred             cCCCCcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence            98 666554 4444557777654433222211 111 113467899999 8987776432                 356


Q ss_pred             EEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEE-eCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEE
Q 018675          142 VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC-SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWAL  220 (352)
Q Consensus       142 v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l  220 (352)
                      |..+|...+. .....   ........++++|++..|+.+ ...+.|..|+.............   . ..   . ...+
T Consensus       167 v~~~d~~~~~-~~~~~---~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~---~-~~---g-P~gi  234 (322)
T 2fp8_A          167 LIKYDPSTKE-TTLLL---KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV---K-IP---N-PGNI  234 (322)
T ss_dssp             EEEEETTTTE-EEEEE---EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE---E-CS---S-EEEE
T ss_pred             EEEEeCCCCE-EEEec---cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE---e-CC---C-CCCe
Confidence            7777754332 21111   111234578999998865554 55688999887643222221111   1 11   2 5678


Q ss_pred             EEcCCCCEEEEEeC----------CCcEEEEcC
Q 018675          221 SFNAKGDKLVSCSD----------DLTIKIWGA  243 (352)
Q Consensus       221 ~~~~~~~~l~s~~~----------dg~i~iwd~  243 (352)
                      +++++|.++++...          .+.|..+|.
T Consensus       235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~  267 (322)
T 2fp8_A          235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE  267 (322)
T ss_dssp             EECTTSCEEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred             EECCCCCEEEEecCcccccccCCCccEEEEECC
Confidence            99999998877654          456777764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.04  E-value=0.0034  Score=53.89  Aligned_cols=242  Identities=12%  Similarity=0.021  Sum_probs=126.0

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeec-----------------cccCCeeEEEECC-CCcEEEEeeC
Q 018675           77 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-----------------GHENEVKSVSWNA-SGTLLATCGR  138 (352)
Q Consensus        77 v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~-----------------~h~~~v~~v~~~~-~~~~l~s~~~  138 (352)
                      ...++++++|+++.++..++.|..|+..++.........                 .....+..+++.+ +++++++ ..
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~-d~   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV-DC   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-ET
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-EC
Confidence            456788999987778888899998876654433221100                 0113578899997 6665554 33


Q ss_pred             CCcEEEEecCCCCeeEEEEEe-ec-CccCeeEEEEcC-CCCEEEEEeC-----------------CCcEEEEecCCCCCC
Q 018675          139 DKSVWIWEVMPGNEFECVSVL-QG-HAQDVKMVQWHP-TMDVLFSCSY-----------------DNTIKVWWAEDTDSD  198 (352)
Q Consensus       139 d~~v~vwd~~~~~~~~~~~~~-~~-h~~~v~~~~~~~-~~~~l~s~~~-----------------d~~i~iw~~~~~~~~  198 (352)
                      .+.+..+|...+ ....+... .+ .......+.+.| ++.+.++-..                 ++.|..++.....  
T Consensus       100 ~~~i~~~d~~~g-~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--  176 (322)
T 2fp8_A          100 YYHLSVVGSEGG-HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE--  176 (322)
T ss_dssp             TTEEEEECTTCE-ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE--
T ss_pred             CCCEEEEeCCCC-EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE--
Confidence            444777775422 11222111 11 112356788899 8876665432                 2456666542211  


Q ss_pred             CceeEeeeeccCCCCcccEEEEEEcCCCCEE-EEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEec
Q 018675          199 NWHCVQTISESNNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS  277 (352)
Q Consensus       199 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  277 (352)
                       .   ..+...    ....+.|+++|+++.| ++-...+.|.+|+++....      ...+....    ... ...+..+
T Consensus       177 -~---~~~~~~----~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~------~~~~~~~~----~~g-P~gi~~d  237 (322)
T 2fp8_A          177 -T---TLLLKE----LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK------GTAEVLVK----IPN-PGNIKRN  237 (322)
T ss_dssp             -E---EEEEEE----ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT------TCEEEEEE----CSS-EEEEEEC
T ss_pred             -E---EEeccC----CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC------CccceEEe----CCC-CCCeEEC
Confidence             1   111100    1234568999999855 4545668899998652110      01111111    112 5566777


Q ss_pred             CCce-EEecCC----------CCeEEEEEccCCccccCcccceeeeccccc-CcceeEEEecCCCcceEEEecCCCeEEE
Q 018675          278 REGI-IASGAA----------DDSVQFFVESKDDLIDGPSYKMLLKKEKAH-DMDVNSVQWSPGERRLLASASDDGMIKI  345 (352)
Q Consensus       278 ~~~~-~~s~~~----------d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~sp~~~~~l~s~~~Dg~i~i  345 (352)
                      +++. +++...          .+.+..++.... .     .. .+....+. -..++.+++. ++ +++++....+.|.+
T Consensus       238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~-~-----~~-~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~  308 (322)
T 2fp8_A          238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGN-I-----LE-VIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGI  308 (322)
T ss_dssp             TTSCEEEEEEEETTSSTTSCEEEEEEEECTTSC-E-----EE-EEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEE
T ss_pred             CCCCEEEEecCcccccccCCCccEEEEECCCCC-E-----EE-EEECCCCCccccceEEEEe-CC-EEEEeecCCCceEE
Confidence            7663 333322          234555543211 0     01 11111111 2346677773 45 57888878889999


Q ss_pred             Eeecc
Q 018675          346 WELAN  350 (352)
Q Consensus       346 w~~~~  350 (352)
                      +++..
T Consensus       309 ~~~~~  313 (322)
T 2fp8_A          309 LVYDK  313 (322)
T ss_dssp             EEC--
T ss_pred             Eeccc
Confidence            98764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.00  E-value=0.0034  Score=52.14  Aligned_cols=211  Identities=9%  Similarity=0.007  Sum_probs=119.1

Q ss_pred             eeeeeeecCCcc--ceEEEEEccCCCCCCCccEEEEeeC--CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC
Q 018675           11 LREIQTLEGHTD--RVWSLAWKPTAGVDGVAPVFASCSG--DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG   86 (352)
Q Consensus        11 ~~~~~~~~gH~~--~V~~i~~~p~~~~~~~~~~l~s~s~--D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~   86 (352)
                      .+.+.++ .|..  ...++.|+|+      +.++++.+.  +++|++.|..+++......  +.. + .....+++.  +
T Consensus         9 ~~vv~~~-p~~~~~f~~Gl~~~~d------g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~--l~~-~-~fgeGi~~~--g   75 (266)
T 2iwa_A            9 VEVLNEF-PHDPYAFTQGLVYAEN------DTLFESTGLYGRSSVRQVALQTGKVENIHK--MDD-S-YFGEGLTLL--N   75 (266)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEECST------TEEEEEECSTTTCEEEEEETTTCCEEEEEE--CCT-T-CCEEEEEEE--T
T ss_pred             ceEEEEE-ECCCCCCcccEEEeCC------CeEEEECCCCCCCEEEEEECCCCCEEEEEe--cCC-C-cceEEEEEe--C
Confidence            3455565 3554  3579999985      245555553  6899999998876432211  111 1 111233333  4


Q ss_pred             CEE-EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec--Cc
Q 018675           87 KLL-ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG--HA  163 (352)
Q Consensus        87 ~~l-~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--h~  163 (352)
                      +.| ++.-.++.+.++|..+.+  .+..+..-...-+.  +++++..++.+..+++|.++|....+....+..-..  ..
T Consensus        76 ~~lyv~t~~~~~v~viD~~t~~--v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~  151 (266)
T 2iwa_A           76 EKLYQVVWLKNIGFIYDRRTLS--NIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV  151 (266)
T ss_dssp             TEEEEEETTCSEEEEEETTTTE--EEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             CEEEEEEecCCEEEEEECCCCc--EEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence            444 455567899999977653  34444321122233  446777666666788999999765543333322111  11


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeecc---------CCCCcccEEEEEEcCCCC-EEEEEe
Q 018675          164 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES---------NNGHSSTIWALSFNAKGD-KLVSCS  233 (352)
Q Consensus       164 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---------~~~h~~~i~~l~~~~~~~-~l~s~~  233 (352)
                      ...+.+.|. ++...+....++.|.+.|....     +....+...         ...-....+.|+|+|+++ +++++.
T Consensus       152 ~~~nele~~-dg~lyvn~~~~~~V~vID~~tg-----~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk  225 (266)
T 2iwa_A          152 IRLNELEYI-NGEVWANIWQTDCIARISAKDG-----TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK  225 (266)
T ss_dssp             CCEEEEEEE-TTEEEEEETTSSEEEEEETTTC-----CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred             ccceeEEEE-CCEEEEecCCCCeEEEEECCCC-----cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence            235567777 5644444445788888876543     223333211         000113568999999975 566776


Q ss_pred             CCCcEEEEcCC
Q 018675          234 DDLTIKIWGAD  244 (352)
Q Consensus       234 ~dg~i~iwd~~  244 (352)
                      ..+++...++.
T Consensus       226 ~~~~v~~i~l~  236 (266)
T 2iwa_A          226 LWPKLFEIKLH  236 (266)
T ss_dssp             TCSEEEEEEEE
T ss_pred             CCCeEEEEEEe
Confidence            77888877653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.00  E-value=0.00061  Score=65.22  Aligned_cols=204  Identities=12%  Similarity=0.136  Sum_probs=107.8

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeeccee-----cce-EEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeE
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT-----RTV-RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVA  112 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~-----~~v-~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~  112 (352)
                      +..++.++.++.|.-+|..+++..|+..........     ..+ ..++.  .+..++.++.|+.+..+|..+++.. ..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~-W~  146 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRA-WS  146 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE-EE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEe-ee
Confidence            346777788999999999999988875432110000     000 01111  3567788889999999998887642 22


Q ss_pred             eecc-ccCCeeEEEECC---CCcEEEEee-----CCCcEEEEecCCCCeeEEEEEeecC---------------------
Q 018675          113 TLEG-HENEVKSVSWNA---SGTLLATCG-----RDKSVWIWEVMPGNEFECVSVLQGH---------------------  162 (352)
Q Consensus       113 ~~~~-h~~~v~~v~~~~---~~~~l~s~~-----~d~~v~vwd~~~~~~~~~~~~~~~h---------------------  162 (352)
                      .-.. +......+..+|   ++..++..+     .++.|..||...++..-......+.                     
T Consensus       147 ~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          147 VDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             EECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             ecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            1111 111111111122   444444332     3689999998877642221111000                     


Q ss_pred             -------ccCeeEEEEcCCCCEEEEEeCCCc-------------------EEEEecCCCCCCCceeEeeeecc--CCCCc
Q 018675          163 -------AQDVKMVQWHPTMDVLFSCSYDNT-------------------IKVWWAEDTDSDNWHCVQTISES--NNGHS  214 (352)
Q Consensus       163 -------~~~v~~~~~~~~~~~l~s~~~d~~-------------------i~iw~~~~~~~~~~~~~~~~~~~--~~~h~  214 (352)
                             ...-..+.+.|+...++.++.++.                   |..+|..... ..|.. +.....  .....
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~-~~W~~-~~~~~d~wd~~~~  304 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE-YVWHY-QTTPGDAWDYTAT  304 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC-EEEEE-ESSTTCCSCCCCC
T ss_pred             eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc-eeEee-ecCCcccccccCC
Confidence                   001124678888888888877653                   7777765432 11211 100000  00011


Q ss_pred             ccEEEEEEcCCCC---EEEEEeCCCcEEEEcCCccc
Q 018675          215 STIWALSFNAKGD---KLVSCSDDLTIKIWGADITR  247 (352)
Q Consensus       215 ~~i~~l~~~~~~~---~l~s~~~dg~i~iwd~~~~~  247 (352)
                      .++.......+|+   .++.++.+|.+.++|.+..+
T Consensus       305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence            2222223333554   78889999999999976443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.98  E-value=0.0032  Score=51.89  Aligned_cols=195  Identities=13%  Similarity=0.194  Sum_probs=100.7

Q ss_pred             cccCC--eeEEEECCCCcEEEEeeCCC--cEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE-EEeCCCcEEEE
Q 018675          116 GHENE--VKSVSWNASGTLLATCGRDK--SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVW  190 (352)
Q Consensus       116 ~h~~~--v~~v~~~~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~iw  190 (352)
                      .|...  ...+.|+ ++.++.+.+.++  +|+++|+..++....+. +.   .........+.+..|. ....++.+.+|
T Consensus        38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~---~~~FgeGit~~g~~ly~ltw~~~~v~v~  112 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LG---KRYFGEGISDWKDKIVGLTWKNGLGFVW  112 (262)
T ss_dssp             ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CC---TTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred             cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-cC---CccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence            35443  3678888 677777877766  89999998776443322 21   1222222223344444 44558889999


Q ss_pred             ecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecc-cC-
Q 018675          191 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY-HD-  268 (352)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~-  268 (352)
                      |...     .+.+.++...  +.+   +.++  +++..|+.+..+++|.++|....+..           ..+... .. 
T Consensus       113 D~~t-----~~~~~ti~~~--~eG---~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~-----------~~I~V~~~g~  169 (262)
T 3nol_A          113 NIRN-----LRQVRSFNYD--GEG---WGLT--HNDQYLIMSDGTPVLRFLDPESLTPV-----------RTITVTAHGE  169 (262)
T ss_dssp             ETTT-----CCEEEEEECS--SCC---CCEE--ECSSCEEECCSSSEEEEECTTTCSEE-----------EEEECEETTE
T ss_pred             ECcc-----CcEEEEEECC--CCc---eEEe--cCCCEEEEECCCCeEEEEcCCCCeEE-----------EEEEeccCCc
Confidence            7543     2334444321  111   2344  45665665555788999987532221           111110 01 


Q ss_pred             --cceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeec---ccccCcceeEEEecCCCcceEEEec
Q 018675          269 --RTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK---EKAHDMDVNSVQWSPGERRLLASAS  338 (352)
Q Consensus       269 --~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~i~~~~~sp~~~~~l~s~~  338 (352)
                        ..+..+.+..+..++..-.++.|.+.+.....+........+...   ...-..-.+.|||+|+++++++||-
T Consensus       170 ~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          170 ELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence              112334555333444444566677765544332211111101000   0111235789999999888888774

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.92  E-value=5.2e-06  Score=73.33  Aligned_cols=141  Identities=15%  Similarity=0.106  Sum_probs=70.9

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCcc
Q 018675           85 SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ  164 (352)
Q Consensus        85 ~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~  164 (352)
                      ++..+++++.|+.+..||..+++.  +-....  +.+.+..+..++..+++++.|+.|..||...++..   ..+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~--~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~---w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSI--KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL---TKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCE--EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCS---EECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE--EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee---eeeeccCc
Confidence            577888999999999999887753  223333  44555545567777888889999999998655432   12221211


Q ss_pred             C-eeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          165 D-VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       165 ~-v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      . +.+......+..+++++.++.+..||...... .|    ...    .+.    ...++|++..+++++.|+.|+.||.
T Consensus        81 ~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~-~w----~~~----~~~----~~~~~p~~~~v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           81 ELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEK-QQ----TLS----SAF----ADSLSPSTSLLYLGRTEYTITMYDT  147 (369)
T ss_dssp             HHHTTCSCC-----CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCS
T ss_pred             cccccCceEecCCEEEEEeCCCEEEEEECCCCcE-EE----Eec----CCC----cccccccCCEEEEEecCCEEEEEEC
Confidence            1 10000001344677888899999997654321 11    111    111    1345678888999999999999987


Q ss_pred             Cc
Q 018675          244 DI  245 (352)
Q Consensus       244 ~~  245 (352)
                      +.
T Consensus       148 ~t  149 (369)
T 2hz6_A          148 KT  149 (369)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.92  E-value=0.0065  Score=50.44  Aligned_cols=228  Identities=10%  Similarity=0.054  Sum_probs=123.6

Q ss_pred             EEEEeeCCCeEEEEecCCCceee-eeeeeeecceecceEEEEECCCCCE-EEEEeCCCcEEEEEccCCceeeeEeecccc
Q 018675           41 VFASCSGDKTVRIWEQSASSRFW-NCKAVLEEMHTRTVRSCAWSPSGKL-LATASFDATTCIWEDVGGDYECVATLEGHE  118 (352)
Q Consensus        41 ~l~s~s~D~~v~~w~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~  118 (352)
                      +|+-+.. +.|+.+++....... .....+ ......+..++|+++++. .++-..++.|..++..+....  .......
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~-~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~~~~~   78 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFL-HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--TIIRQDL   78 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEE-EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--EEECTTC
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeee-cCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--EEEECCC
Confidence            3444333 477778776542100 000011 111245678999996654 455556788999887654322  1222222


Q ss_pred             CCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC---CCcEEEEecCC
Q 018675          119 NEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY---DNTIKVWWAED  194 (352)
Q Consensus       119 ~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~iw~~~~  194 (352)
                      .....+++.+++. ++++-...+.|.++++.... ...+  ..........++++|++..|+.+..   .+.|..++...
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg  155 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEE--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence            4678999998654 55555567789998875322 1211  1112235678899997665555543   35677776533


Q ss_pred             CCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE-EEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEE
Q 018675          195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFS  273 (352)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  273 (352)
                      ..   .   ..+..   ........++++|++..| ++-...+.|.+++.+....           ......  ......
T Consensus       156 ~~---~---~~~~~---~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-----------~~~~~~--~~~P~g  213 (267)
T 1npe_A          156 TN---R---RILAQ---DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-----------RKVLEG--LQYPFA  213 (267)
T ss_dssp             CC---C---EEEEC---TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-----------EEEEEC--CCSEEE
T ss_pred             CC---c---EEEEE---CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-----------EEEecC--CCCceE
Confidence            21   1   11111   112357789999986654 5555678899998753211           001111  123445


Q ss_pred             EEecCCceEEecCCCCeEEEEEcc
Q 018675          274 VHWSREGIIASGAADDSVQFFVES  297 (352)
Q Consensus       274 ~~~~~~~~~~s~~~d~~v~~~~~~  297 (352)
                      ++...+..+++....+.|..++..
T Consensus       214 i~~d~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          214 VTSYGKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             EEEETTEEEEEETTTTEEEEEETT
T ss_pred             EEEeCCEEEEEECCCCeEEEEeCC
Confidence            555544455555566777777543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.87  E-value=0.0032  Score=51.93  Aligned_cols=190  Identities=12%  Similarity=0.097  Sum_probs=103.5

Q ss_pred             eeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCc
Q 018675          121 VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW  200 (352)
Q Consensus       121 v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~  200 (352)
                      ...+.|+. +.++++.+.++.|+++|+..++....+  +.... ..-.++... +...+....++.+.+||...     .
T Consensus        57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~-FgeGit~~g-~~Ly~ltw~~~~v~V~D~~T-----l  126 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLGNI-FAEGLASDG-ERLYQLTWTEGLLFTWSGMP-----P  126 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTC-CEEEEEECS-SCEEEEESSSCEEEEEETTT-----T
T ss_pred             cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCc-ceeEEEEeC-CEEEEEEccCCEEEEEECCc-----C
Confidence            35777763 577788888889999999877655444  33211 112344432 34445556788999997543     3


Q ss_pred             eeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeec----ccCcceEEEEe
Q 018675          201 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG----YHDRTIFSVHW  276 (352)
Q Consensus       201 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~  276 (352)
                      +.+.++...  +..   +.++  +++..|+.+..+++|.++|....+..           ..+..    ..-..+..+.|
T Consensus       127 ~~~~ti~~~--~eG---wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~-----------~~I~V~~~g~~v~~lNeLe~  188 (268)
T 3nok_A          127 QRERTTRYS--GEG---WGLC--YWNGKLVRSDGGTMLTFHEPDGFALV-----------GAVQVKLRGQPVELINELEC  188 (268)
T ss_dssp             EEEEEEECS--SCC---CCEE--EETTEEEEECSSSEEEEECTTTCCEE-----------EEEECEETTEECCCEEEEEE
T ss_pred             cEEEEEeCC--Cce---eEEe--cCCCEEEEECCCCEEEEEcCCCCeEE-----------EEEEeCCCCcccccccccEE
Confidence            445555421  221   3444  45666666666889999986543221           11111    01112344555


Q ss_pred             cCCceEEecCCCCeEEEEEccCCccccCcccceeeec----ccccCcceeEEEecCCCcceEEEec
Q 018675          277 SREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK----EKAHDMDVNSVQWSPGERRLLASAS  338 (352)
Q Consensus       277 ~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~----~~~h~~~i~~~~~sp~~~~~l~s~~  338 (352)
                      ..+..++..-..+.|.+.+.....+........+...    ...-..-.+.|||+|+++++++||-
T Consensus       189 ~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          189 ANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             ETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             eCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            5444444444566777776544332221111111000    0112245789999998888998874

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.86  E-value=0.0039  Score=53.28  Aligned_cols=213  Identities=12%  Similarity=0.059  Sum_probs=121.1

Q ss_pred             EEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCC
Q 018675           41 VFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENE  120 (352)
Q Consensus        41 ~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~  120 (352)
                      .+..++.++.+..++.. ++..+....     ....+.++...+++.+ ..++.++.+..++.. ++.  ..........
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~-----~~~~~~~~~~~~~g~l-~vgt~~~~l~~~d~~-g~~--~~~~~~~~~~  178 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKT-----KKAIYATPIVSEDGTI-YVGSNDNYLYAINPD-GTE--KWRFKTNDAI  178 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEEC-----SSCCCSCCEECTTSCE-EEECTTSEEEEECTT-SCE--EEEEECSSCC
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcC-----CCceeeeeEEcCCCEE-EEEcCCCEEEEECCC-CCE--eEEEecCCCc
Confidence            46667778889889877 554443221     2234555666777774 457778899999876 432  2223333455


Q ss_pred             eeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCc
Q 018675          121 VKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW  200 (352)
Q Consensus       121 v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~  200 (352)
                      +.++...+++.++++.   +.+..+| ..+..   ..........+.++...+++. +..++.++.+..++...   .  
T Consensus       179 ~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~---~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g---~--  245 (330)
T 3hxj_A          179 TSAASIGKDGTIYFGS---DKVYAIN-PDGTE---KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG---T--  245 (330)
T ss_dssp             CSCCEECTTCCEEEES---SSEEEEC-TTSCE---EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS---C--
T ss_pred             eeeeEEcCCCEEEEEe---CEEEEEC-CCCcE---EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC---C--
Confidence            6777777788766554   7788888 44432   222333334566777777765 56677778888875311   1  


Q ss_pred             eeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc
Q 018675          201 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG  280 (352)
Q Consensus       201 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  280 (352)
                       .......    ....+.++.+.+++. |..++.+|.|..+|.. .+.       .|.  ..   .....+.++..+.++
T Consensus       246 -~~~~~~~----~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~-g~~-------~~~--~~---~~~~~~~~~~~d~~g  306 (330)
T 3hxj_A          246 -EKWRFKT----GKRIESSPVIGNTDT-IYFGSYDGHLYAINPD-GTE-------KWN--FE---TGSWIIATPVIDENG  306 (330)
T ss_dssp             -EEEEEEC----SSCCCSCCEECTTSC-EEEECTTCEEEEECTT-SCE-------EEE--EE---CSSCCCSCCEECTTC
T ss_pred             -EeEEeeC----CCCccccceEcCCCe-EEEecCCCCEEEECCC-CcE-------EEE--EE---cCCccccceEEcCCC
Confidence             1111111    111122344555664 5566778788888742 110       111  11   112334445556677


Q ss_pred             eEEecCCCCeEEEEE
Q 018675          281 IIASGAADDSVQFFV  295 (352)
Q Consensus       281 ~~~s~~~d~~v~~~~  295 (352)
                      .+..++.+|.+.+..
T Consensus       307 ~l~~gt~~G~~~~~~  321 (330)
T 3hxj_A          307 TIYFGTRNGKFYALF  321 (330)
T ss_dssp             CEEEECTTSCEEEEE
T ss_pred             EEEEEcCCCeEEEEe
Confidence            788888888887763

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.85  E-value=0.0019  Score=56.62  Aligned_cols=67  Identities=15%  Similarity=0.030  Sum_probs=45.6

Q ss_pred             EEEcCCCCEEEEEeC---------CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-EEEEEe-CCCc
Q 018675          169 VQWHPTMDVLFSCSY---------DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCS-DDLT  237 (352)
Q Consensus       169 ~~~~~~~~~l~s~~~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s~~-~dg~  237 (352)
                      +.++|++..++.+..         ++.+.++|....     +.+.++..     ......+.|+|+|+ .+++.. .++.
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~-----~vv~~i~v-----g~~p~gi~~s~Dg~~l~va~~~~~~~  338 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-----QTSGPISN-----GHDSDAIIAAQDGASDNYANSAGTEV  338 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-----CEEECCEE-----EEEECEEEECCSSSCEEEEEETTTTE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC-----eEEEEEEC-----CCCcceEEECCCCCEEEEEccCCCCe
Confidence            679999888776543         235668876542     22333321     23577899999997 566777 5999


Q ss_pred             EEEEcCCc
Q 018675          238 IKIWGADI  245 (352)
Q Consensus       238 i~iwd~~~  245 (352)
                      |.++|+..
T Consensus       339 VsVID~~t  346 (368)
T 1mda_H          339 LDIYDAAS  346 (368)
T ss_dssp             EEEEESSS
T ss_pred             EEEEECCC
Confidence            99999864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.84  E-value=0.0017  Score=62.89  Aligned_cols=202  Identities=15%  Similarity=0.085  Sum_probs=101.8

Q ss_pred             CCcc-ceEEEEEc-cCCCCCCCccEEE-EeeCC----CeEEEEecCCC-ceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           19 GHTD-RVWSLAWK-PTAGVDGVAPVFA-SCSGD----KTVRIWEQSAS-SRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        19 gH~~-~V~~i~~~-p~~~~~~~~~~l~-s~s~D----~~v~~w~~~~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      +|.- .+.+..|+ |+      ++.+| +.+.+    .+|.++++.++ ..+   ...+    ......++|+|||+.|+
T Consensus       170 ~~~~~~~~~~~~S~PD------G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l---~~~~----~~~~~~~~WspDg~~l~  236 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPE------HDLVAFSVDMSGNEVYTIEFKRISDPSQTI---ADKV----SGTNGEIVWGPDHTSLF  236 (751)
T ss_dssp             TCSCCEEEEEEECTTT------TCEEEEEEESSSSSCEEEEEEETTCTTCCC---CCCE----EEECSCCEECSSTTEEE
T ss_pred             CCCeEEEeeeEecCCC------CCEEEEEEeCCCCceEEEEEEECCCCCEeC---Cccc----cCceeeEEEecCCCEEE
Confidence            4543 67889999 87      45555 33333    35999998876 421   1111    11234678999999888


Q ss_pred             EEeCCC-----cEEEEEccCCceeeeEeec-cccCCeeEEEECCCCcEEEEeeC---CCcEEEEecCCCC-eeEEEEEee
Q 018675           91 TASFDA-----TTCIWEDVGGDYECVATLE-GHENEVKSVSWNASGTLLATCGR---DKSVWIWEVMPGN-EFECVSVLQ  160 (352)
Q Consensus        91 s~~~d~-----~i~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~---d~~v~vwd~~~~~-~~~~~~~~~  160 (352)
                      ....|.     .|.+++..++......... ........+.|+|+|++|+..+.   ...|.++|+..+. .........
T Consensus       237 y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~  316 (751)
T 2xe4_A          237 YVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP  316 (751)
T ss_dssp             EEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred             EEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence            777652     4555555443211112222 22234567889999998775542   3467777875431 110011122


Q ss_pred             cCccCeeEEEEcCCCCEEEEEeCC--CcEEE--EecCCCCCCCcee-EeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC
Q 018675          161 GHAQDVKMVQWHPTMDVLFSCSYD--NTIKV--WWAEDTDSDNWHC-VQTISESNNGHSSTIWALSFNAKGDKLVSCSDD  235 (352)
Q Consensus       161 ~h~~~v~~~~~~~~~~~l~s~~~d--~~i~i--w~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d  235 (352)
                      ..........|+..+.+++....+  +..++  +++...  ..+.. +  +..   .....+..+.+. .+.++++...+
T Consensus       317 ~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~--~~~~~~l--i~~---~~~~~l~~~~~~-~~~lv~~~~~~  388 (751)
T 2xe4_A          317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP--SDWSHVL--VDH---SEDVFMESIAVR-SNYLVVAGRRA  388 (751)
T ss_dssp             CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTST--TCCCCEE--ECC---CSSEEEEEEEEC-SSEEEEEEEET
T ss_pred             CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc--ccceeeE--ECC---CCCcEEEEEEEE-CCEEEEEEEeC
Confidence            222333444444433344444443  33344  443221  12221 1  110   111234555554 23455667778


Q ss_pred             CcEEEE
Q 018675          236 LTIKIW  241 (352)
Q Consensus       236 g~i~iw  241 (352)
                      +..++|
T Consensus       389 g~~~l~  394 (751)
T 2xe4_A          389 GLTRIW  394 (751)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            866655

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.81  E-value=0.0097  Score=48.99  Aligned_cols=197  Identities=9%  Similarity=0.102  Sum_probs=110.0

Q ss_pred             eeeeeecCCccc--eEEEEEccCCCCCCCccEEEEeeCCC--eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCC
Q 018675           12 REIQTLEGHTDR--VWSLAWKPTAGVDGVAPVFASCSGDK--TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK   87 (352)
Q Consensus        12 ~~~~~~~gH~~~--V~~i~~~p~~~~~~~~~~l~s~s~D~--~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~   87 (352)
                      +.+.++ .|...  ..++.|+ +      +.++.+++.+|  +|+.+|+.+++...+..  +    ........+.++++
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~------~~LyestG~~g~S~v~~vD~~Tgkv~~~~~--l----~~~~FgeGit~~g~   97 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-N------GYFYESTGLNGRSSIRKVDIESGKTLQQIE--L----GKRYFGEGISDWKD   97 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-T------TEEEEEEEETTEEEEEEECTTTCCEEEEEE--C----CTTCCEEEEEEETT
T ss_pred             EEEEEe-cCCCCcccceEEEE-C------CEEEEECCCCCCceEEEEECCCCcEEEEEe--c----CCccceeEEEEeCC
Confidence            455556 45543  3678887 3      35778888776  89999998876432221  1    12233333333454


Q ss_pred             EEEE-EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEee-cCc-c
Q 018675           88 LLAT-ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ-GHA-Q  164 (352)
Q Consensus        88 ~l~s-~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~h~-~  164 (352)
                      .|.. ...++.+.+||..+.+.  +.++..- ..=+.++  +++..|+.+..++.|.++|....+....+.... +.. .
T Consensus        98 ~ly~ltw~~~~v~v~D~~t~~~--~~ti~~~-~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~  172 (262)
T 3nol_A           98 KIVGLTWKNGLGFVWNIRNLRQ--VRSFNYD-GEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELP  172 (262)
T ss_dssp             EEEEEESSSSEEEEEETTTCCE--EEEEECS-SCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECC
T ss_pred             EEEEEEeeCCEEEEEECccCcE--EEEEECC-CCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccc
Confidence            4444 44578899999876543  4444321 1223444  566666666667889999976555433333221 111 2


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeecc--------CCCCcccEEEEEEcCCCCEEEEEe
Q 018675          165 DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES--------NNGHSSTIWALSFNAKGDKLVSCS  233 (352)
Q Consensus       165 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~--------~~~h~~~i~~l~~~~~~~~l~s~~  233 (352)
                      .++.+.|. ++...+....++.|.+.|....     +....+...        ...-....+.|+|+|+++.|...|
T Consensus       173 ~lNELe~~-~G~lyan~w~~~~I~vIDp~tG-----~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          173 ELNELEWV-DGEIFANVWQTNKIVRIDPETG-----KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CEEEEEEE-TTEEEEEETTSSEEEEECTTTC-----BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ccceeEEE-CCEEEEEEccCCeEEEEECCCC-----cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            34456665 5655544446778888865432     223333211        011134678999999876665555

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.80  E-value=0.0093  Score=48.60  Aligned_cols=197  Identities=11%  Similarity=0.108  Sum_probs=100.2

Q ss_pred             cccCC--eeEEEECCCCcEEEEeeCCC--cEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 018675          116 GHENE--VKSVSWNASGTLLATCGRDK--SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW  191 (352)
Q Consensus       116 ~h~~~--v~~v~~~~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~  191 (352)
                      .|+..  +..+.|++ +.++.+.+.++  +|+.+|+..++....+ .+..+. .--.++... +...+....++.+.+||
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~~~-fgeGi~~~~-~~ly~ltw~~~~v~v~D   91 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPPPY-FGAGIVAWR-DRLIQLTWRNHEGFVYD   91 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCTTC-CEEEEEEET-TEEEEEESSSSEEEEEE
T ss_pred             CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCCCc-ceeEEEEeC-CEEEEEEeeCCEEEEEE
Confidence            45433  55788876 56666766654  8999999877643322 122211 112233332 33444556688999996


Q ss_pred             cCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeec----cc
Q 018675          192 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG----YH  267 (352)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~  267 (352)
                      ...     ...+.++...  ++   =+.|+  +++..|..+..++.|.++|....+..           ..+..    ..
T Consensus        92 ~~t-----l~~~~ti~~~--~~---Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~-----------~~I~V~~~g~~  148 (243)
T 3mbr_X           92 LAT-----LTPRARFRYP--GE---GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQV-----------GSIKVTAGGRP  148 (243)
T ss_dssp             TTT-----TEEEEEEECS--SC---CCEEE--ECSSCEEEECSSSEEEEECTTTCCEE-----------EEEECEETTEE
T ss_pred             CCc-----CcEEEEEeCC--CC---ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEE-----------EEEEEccCCcc
Confidence            543     3445555421  22   13455  45555555555889999987533221           11111    00


Q ss_pred             CcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecc----cccCcceeEEEecCCCcceEEEecC
Q 018675          268 DRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKE----KAHDMDVNSVQWSPGERRLLASASD  339 (352)
Q Consensus       268 ~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~i~~~~~sp~~~~~l~s~~~  339 (352)
                      -..+..+.+..+..++..-....|.+.+.....+........+....    ..-..-.+.||++|++.++++||-.
T Consensus       149 ~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          149 LDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             CCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             cccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            11233444443334444444556666655433322111111111000    1122457899999988888988753

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.80  E-value=0.01  Score=48.90  Aligned_cols=192  Identities=10%  Similarity=0.031  Sum_probs=109.6

Q ss_pred             eeeeecCCccc--eEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEE--EEECCCCCE
Q 018675           13 EIQTLEGHTDR--VWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRS--CAWSPSGKL   88 (352)
Q Consensus        13 ~~~~~~gH~~~--V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~--~~~s~~~~~   88 (352)
                      .+.++ .|...  ..++.|+.       +.++.+.+.++.|+.+|+.+++.....   +    ......  +++.. +++
T Consensus        45 Vv~~~-phd~~~ftqGL~~~~-------~~Ly~stG~~g~v~~iD~~Tgkv~~~~---l----~~~~FgeGit~~g-~~L  108 (268)
T 3nok_A           45 IIREY-PHATNAFTQGLVFHQ-------GHFFESTGHQGTLRQLSLESAQPVWME---R----LGNIFAEGLASDG-ERL  108 (268)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-------TEEEEEETTTTEEEECCSSCSSCSEEE---E----CTTCCEEEEEECS-SCE
T ss_pred             EEEEE-cCCCccccceEEEEC-------CEEEEEcCCCCEEEEEECCCCcEEeEE---C----CCCcceeEEEEeC-CEE
Confidence            34455 45443  35788864       367888889999999999887643222   1    112222  34432 344


Q ss_pred             EEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCc---cC
Q 018675           89 LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA---QD  165 (352)
Q Consensus        89 l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~---~~  165 (352)
                      .+....++.+.+||..+.+  .+.++.. ...-+.++  +++..|+.+..++.|.++|....+....+.... +.   ..
T Consensus       109 y~ltw~~~~v~V~D~~Tl~--~~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~-~g~~v~~  182 (268)
T 3nok_A          109 YQLTWTEGLLFTWSGMPPQ--RERTTRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL-RGQPVEL  182 (268)
T ss_dssp             EEEESSSCEEEEEETTTTE--EEEEEEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCC
T ss_pred             EEEEccCCEEEEEECCcCc--EEEEEeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC-CCccccc
Confidence            4555567889999977654  3444432 22224454  556777777678899999976555433333221 21   23


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeecc---------CCCCcccEEEEEEcCCCC-EEEEE
Q 018675          166 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES---------NNGHSSTIWALSFNAKGD-KLVSC  232 (352)
Q Consensus       166 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---------~~~h~~~i~~l~~~~~~~-~l~s~  232 (352)
                      ++.+.|. ++...+....++.|.+.|....     +....+...         ...-....+.|+++|+++ +++||
T Consensus       183 lNeLe~~-dG~lyanvw~s~~I~vIDp~TG-----~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          183 INELECA-NGVIYANIWHSSDVLEIDPATG-----TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTCSEEEEECTTTC-----BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             ccccEEe-CCEEEEEECCCCeEEEEeCCCC-----cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            4556665 5654444446778888865432     222333210         111235678999999755 45555

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.80  E-value=0.0092  Score=56.73  Aligned_cols=108  Identities=12%  Similarity=0.143  Sum_probs=66.2

Q ss_pred             ccEEEEeeCCC-----------eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC-CCcEEEEEccCC
Q 018675           39 APVFASCSGDK-----------TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF-DATTCIWEDVGG  106 (352)
Q Consensus        39 ~~~l~s~s~D~-----------~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~i~i~~~~~~  106 (352)
                      +++++.||.+.           .+.+||..++.  |.........+.....++++.+++++++.|+. +..+.+||..+.
T Consensus       198 g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~--w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~  275 (656)
T 1k3i_A          198 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI--VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD  275 (656)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC--BCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred             CEEEEEecccccccccCCCCeEEEEEEeCCCCc--EEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC
Confidence            46778777543           57788877653  22221111112223345677889999999985 457999998877


Q ss_pred             ceeeeEeeccccCCeeEEEECCCCcEEEEee-CC-----CcEEEEecCC
Q 018675          107 DYECVATLEGHENEVKSVSWNASGTLLATCG-RD-----KSVWIWEVMP  149 (352)
Q Consensus       107 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d-----~~v~vwd~~~  149 (352)
                      ++.....+...... .++...+++++++.|+ .+     ..+.+||...
T Consensus       276 ~W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          276 SWIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             EEEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ceeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            66544333221111 2445567888888888 44     5688888753

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.78  E-value=0.0018  Score=61.81  Aligned_cols=105  Identities=8%  Similarity=0.115  Sum_probs=66.0

Q ss_pred             CCeEEEEecCCCceeeeeeeeeec---------------------------ceecceEEEEECCCCCEEEEEeCCC----
Q 018675           48 DKTVRIWEQSASSRFWNCKAVLEE---------------------------MHTRTVRSCAWSPSGKLLATASFDA----   96 (352)
Q Consensus        48 D~~v~~w~~~~~~~~~~~~~~~~~---------------------------~h~~~v~~~~~s~~~~~l~s~~~d~----   96 (352)
                      |+.|..+|..+++..|+....-..                           ........++++|++..+..+..++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            799999999999888875421100                           0001113567888888888777664    


Q ss_pred             ---------------cEEEEEccCCceeeeEeecccc-------CCeeEEEECCCC---cEEEEeeCCCcEEEEecCCCC
Q 018675           97 ---------------TTCIWEDVGGDYECVATLEGHE-------NEVKSVSWNASG---TLLATCGRDKSVWIWEVMPGN  151 (352)
Q Consensus        97 ---------------~i~i~~~~~~~~~~~~~~~~h~-------~~v~~v~~~~~~---~~l~s~~~d~~v~vwd~~~~~  151 (352)
                                     ++..+|..+++..=......|.       .....+....+|   ..++.++.+|.+.++|...++
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           4888888777542222222231       112223333466   678999999999999987776


Q ss_pred             e
Q 018675          152 E  152 (352)
Q Consensus       152 ~  152 (352)
                      .
T Consensus       349 ~  349 (677)
T 1kb0_A          349 F  349 (677)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.76  E-value=0.0041  Score=60.19  Aligned_cols=203  Identities=10%  Similarity=0.114  Sum_probs=105.5

Q ss_pred             ceEEEEEC-CCCCEEEEEeC-CC----cEEEEEccCC-ceeeeEeeccccCCeeEEEECCCCcEEEEeeCC-----CcEE
Q 018675           76 TVRSCAWS-PSGKLLATASF-DA----TTCIWEDVGG-DYECVATLEGHENEVKSVSWNASGTLLATCGRD-----KSVW  143 (352)
Q Consensus        76 ~v~~~~~s-~~~~~l~s~~~-d~----~i~i~~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~v~  143 (352)
                      .+...+|| |||++||.+.. +|    .|.++|..++ +.. ...+.   .....+.|+|+++.|+....|     ..|.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-Ccccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            57788999 99998885543 22    4888888776 421 11111   123568899999877766655     2577


Q ss_pred             EEecCCCCeeEEEEEee-cCccCeeEEEEcCCCCEEEEEeC---CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEE
Q 018675          144 IWEVMPGNEFECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSY---DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA  219 (352)
Q Consensus       144 vwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  219 (352)
                      ++++..+..... ..+. ........+.|+|+++.|+..+.   ...|.++++..... .. ....+.   .......++
T Consensus       251 ~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~-~~~~l~---~~~~~~~~s  324 (751)
T 2xe4_A          251 RHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HN-TLEIVR---PREKGVRYD  324 (751)
T ss_dssp             EEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CC-CEEESS---CCCTTCCEE
T ss_pred             EEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-Cc-eeEEee---cCCCCceEE
Confidence            777644321111 1122 22233567889999998775542   23566666543211 11 001111   123345566


Q ss_pred             EEEcCCCCEEEEEeCC--CcEEEEcCCccccccCCCCcccee-eEEeecccCcceEEEEecCCceEEecCCCCeEEEEEc
Q 018675          220 LSFNAKGDKLVSCSDD--LTIKIWGADITRMQSGDGYASWRH-LCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVE  296 (352)
Q Consensus       220 l~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~  296 (352)
                      +.|+..+.+++....+  +..+||.++....      ..|.. +  +.......+..+.+..+.++++...++..+++..
T Consensus       325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~------~~~~~~l--i~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQP------SDWSHVL--VDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             EEEETTTEEEEEECTTTCTTCEEEEEETTST------TCCCCEE--ECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred             EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc------ccceeeE--ECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEE
Confidence            6665544455555544  4455553322100      11221 1  1111112344556665556677777777666543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.70  E-value=0.014  Score=47.55  Aligned_cols=196  Identities=10%  Similarity=0.097  Sum_probs=108.8

Q ss_pred             eeeeeecCCccc--eEEEEEccCCCCCCCccEEEEeeCCC--eEEEEecCCCceeeeeeeeeecceecceEEEEECCCC-
Q 018675           12 REIQTLEGHTDR--VWSLAWKPTAGVDGVAPVFASCSGDK--TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG-   86 (352)
Q Consensus        12 ~~~~~~~gH~~~--V~~i~~~p~~~~~~~~~~l~s~s~D~--~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-   86 (352)
                      +.+.++ .|...  .-++.|++.       .++.+.+.+|  +|+.+|+.+++......  +    ..........+.+ 
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~~-------~LyestG~~g~S~v~~vD~~tgkv~~~~~--l----~~~~fgeGi~~~~~   75 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLRG-------HLYESTGETGRSSVRKVDLETGRILQRAE--V----PPPYFGAGIVAWRD   75 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEETT-------EEEEEECCTTSCEEEEEETTTCCEEEEEE--C----CTTCCEEEEEEETT
T ss_pred             EEEEEc-CCCCccccccEEEECC-------EEEEECCCCCCceEEEEECCCCCEEEEEe--C----CCCcceeEEEEeCC
Confidence            555666 56654  458999873       4677777754  89999998876432211  1    1122222223334 


Q ss_pred             CEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCc---
Q 018675           87 KLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHA---  163 (352)
Q Consensus        87 ~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~---  163 (352)
                      ++.+....++.+.+||..+.+  .+.++.. ...=+.++  +++..|+.+..+++|.++|....+....+..-. +.   
T Consensus        76 ~ly~ltw~~~~v~v~D~~tl~--~~~ti~~-~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~  149 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLATLT--PRARFRY-PGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPL  149 (243)
T ss_dssp             EEEEEESSSSEEEEEETTTTE--EEEEEEC-SSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC
T ss_pred             EEEEEEeeCCEEEEEECCcCc--EEEEEeC-CCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCccc
Confidence            444455567889999977653  3444432 22224554  456666656668899999976554433332211 11   


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeecc-----C----CCCcccEEEEEEcCCCCEEEEEe
Q 018675          164 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES-----N----NGHSSTIWALSFNAKGDKLVSCS  233 (352)
Q Consensus       164 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-----~----~~h~~~i~~l~~~~~~~~l~s~~  233 (352)
                      ..++.+.+. ++...+....+..|.+.|....     +....+...     .    ..-....+.|+++|+++.|...+
T Consensus       150 ~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG-----~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          150 DNLNELEWV-NGELLANVWLTSRIARIDPASG-----KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEEECTTTC-----BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             ccceeeEEe-CCEEEEEECCCCeEEEEECCCC-----CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            234455554 5554444446778888765432     222222210     0    11234678999999766555444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.66  E-value=0.049  Score=52.86  Aligned_cols=283  Identities=10%  Similarity=0.060  Sum_probs=145.2

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEE
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW  101 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~  101 (352)
                      ..|.++...++      + .+-.|..++-|..|+..+... ..... -.......|.++...++|++.+ |+.++.+..+
T Consensus       363 ~~v~~i~~d~~------g-~lWigt~~~Gl~~~~~~~~~~-~~~~~-~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~  432 (781)
T 3v9f_A          363 KVVSSVCDDGQ------G-KLWIGTDGGGINVFENGKRVA-IYNKE-NRELLSNSVLCSLKDSEGNLWF-GTYLGNISYY  432 (781)
T ss_dssp             SCEEEEEECTT------S-CEEEEEBSSCEEEEETTEEEE-ECC------CCCSBEEEEEECTTSCEEE-EETTEEEEEE
T ss_pred             cceEEEEEcCC------C-CEEEEeCCCcEEEEECCCCeE-EEccC-CCCCCCcceEEEEECCCCCEEE-EeccCCEEEE
Confidence            45777766553      2 244445555677777653211 00000 0011235788998888887655 6666778888


Q ss_pred             EccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEee---cCccCeeEEEEcCCCCEE
Q 018675          102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ---GHAQDVKMVQWHPTMDVL  178 (352)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l  178 (352)
                      +..++..............|.++...+++.+.+. +. +-|..+|...+.. .......   .....|.++...+++.+ 
T Consensus       433 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~l-  508 (781)
T 3v9f_A          433 NTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKV-IHHYDTSNSQLLENFVRSIAQDSEGRF-  508 (781)
T ss_dssp             CSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSC-CEEECTTTSSCSCSCEEEEEECTTCCE-
T ss_pred             cCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeE-EecccCcccccccceeEEEEEcCCCCE-
Confidence            7655543221110113457889988888876554 34 4477888654322 1111111   01245778887777764 


Q ss_pred             EEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccce
Q 018675          179 FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWR  258 (352)
Q Consensus       179 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  258 (352)
                      ..|+.++-+..|+....   .   ...+.....-....|.++...++|.+.++.. +|.+..||.+..+...        
T Consensus       509 Wigt~~~Gl~~~~~~~~---~---~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~--------  573 (781)
T 3v9f_A          509 WIGTFGGGVGIYTPDMQ---L---VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV--------  573 (781)
T ss_dssp             EEEESSSCEEEECTTCC---E---EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE--------
T ss_pred             EEEEcCCCEEEEeCCCC---e---EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE--------
Confidence            45555444666753221   1   1122111111235789999999998777554 6765778754322110        


Q ss_pred             eeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccc---cCcceeEEEecCCCcceEE
Q 018675          259 HLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKA---HDMDVNSVQWSPGERRLLA  335 (352)
Q Consensus       259 ~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~i~~~~~sp~~~~~l~  335 (352)
                       .....+.....+.++..++++.+-.++.+|.. .++......      .. .....+   ......++...++|. ++ 
T Consensus       574 -~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~-~~~~~~~~~------~~-~~~~dGl~~~~f~~~~~~~~~~G~-l~-  642 (781)
T 3v9f_A          574 -FQRKEGLPNTHIRAISEDKNGNIWASTNTGIS-CYITSKKCF------YT-YDHSNNIPQGSFISGCVTKDHNGL-IY-  642 (781)
T ss_dssp             -ECGGGTCSCCCCCEEEECSSSCEEEECSSCEE-EEETTTTEE------EE-ECGGGTCCSSCEEEEEEEECTTSC-EE-
T ss_pred             -ccccCCCCCceEEEEEECCCCCEEEEcCCceE-EEECCCCce------EE-ecccCCccccccccCceEECCCCE-EE-
Confidence             00001112345667777777766666666644 443322111      00 011111   112234666677775 44 


Q ss_pred             EecCCCeEE
Q 018675          336 SASDDGMIK  344 (352)
Q Consensus       336 s~~~Dg~i~  344 (352)
                      -|+.+|.++
T Consensus       643 ~g~~~Gl~~  651 (781)
T 3v9f_A          643 FGSINGLCF  651 (781)
T ss_dssp             EEETTEEEE
T ss_pred             EECCCceEE
Confidence            466677543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.64  E-value=0.019  Score=47.38  Aligned_cols=212  Identities=9%  Similarity=0.160  Sum_probs=119.1

Q ss_pred             eeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC
Q 018675           15 QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF   94 (352)
Q Consensus        15 ~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~   94 (352)
                      +.+.|=.+.+.+++|.|+.     +.+++....++.|...+.. ++ +..... +.  -....-.+++.+++.++++.-.
T Consensus        20 ~~l~g~~~~lSGla~~~~~-----~~L~aV~d~~~~I~~ld~~-g~-v~~~i~-l~--g~~D~EGIa~~~~g~~~vs~E~   89 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQS-----NTLFSTINKPAAIVEMTTN-GD-LIRTIP-LD--FVKDLETIEYIGDNQFVISDER   89 (255)
T ss_dssp             EECTTCCSCEEEEEEETTT-----TEEEEEEETTEEEEEEETT-CC-EEEEEE-CS--SCSSEEEEEECSTTEEEEEETT
T ss_pred             eECCCcccCcceeEEeCCC-----CEEEEEECCCCeEEEEeCC-CC-EEEEEe-cC--CCCChHHeEEeCCCEEEEEECC
Confidence            4666777789999999974     2455555567777777765 32 222111 11  1134567788888887776556


Q ss_pred             CCcEEEEEccCCce-eeeEee------ccccCCeeEEEECCCCcEEEEeeCCCcEEEEecC---CCCeeEEEEE--e--e
Q 018675           95 DATTCIWEDVGGDY-ECVATL------EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVM---PGNEFECVSV--L--Q  160 (352)
Q Consensus        95 d~~i~i~~~~~~~~-~~~~~~------~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~---~~~~~~~~~~--~--~  160 (352)
                      ++.+.+++...... ......      ...+.....++|+|.++.|.++.......+|...   ..........  +  .
T Consensus        90 ~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~  169 (255)
T 3qqz_A           90 DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQ  169 (255)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHT
T ss_pred             CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccc
Confidence            67788876543321 111111      1234557899999998777777766555666553   1111222110  0  0


Q ss_pred             cCccCeeEEEEcCCCCE-EEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCC---CcccEEEEEEcCCCCEEEEEeCCC
Q 018675          161 GHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNG---HSSTIWALSFNAKGDKLVSCSDDL  236 (352)
Q Consensus       161 ~h~~~v~~~~~~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~---h~~~i~~l~~~~~~~~l~s~~~dg  236 (352)
                      .+......++++|.... ++.....+.+..+|....    ......+.....+   --...-.|+|.++|+++++ ++-+
T Consensus       170 ~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~----~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n  244 (255)
T 3qqz_A          170 FTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE----VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN  244 (255)
T ss_dssp             CCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT
T ss_pred             cccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC----EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc
Confidence            12345678999996554 455555667777764332    1112222211100   0135567999999997777 5555


Q ss_pred             cEEEE
Q 018675          237 TIKIW  241 (352)
Q Consensus       237 ~i~iw  241 (352)
                      .+..|
T Consensus       245 ~~y~f  249 (255)
T 3qqz_A          245 RFYRF  249 (255)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            55555

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.59  E-value=0.037  Score=49.57  Aligned_cols=154  Identities=11%  Similarity=0.120  Sum_probs=87.7

Q ss_pred             eEEEEECC-CCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-CC----cEEEEecCCC
Q 018675           77 VRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DK----SVWIWEVMPG  150 (352)
Q Consensus        77 v~~~~~s~-~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~----~v~vwd~~~~  150 (352)
                      ...++++| ++..|..+...+.|..++..++...   .+.........++|+++++.|+.+.. ++    .+.+.+ ..+
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~---~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g  214 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS---TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RES  214 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE---EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE---EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCC
Confidence            46788898 3444544444477888877654332   22223456889999999996555543 22    233333 222


Q ss_pred             CeeEEEEEeecCccCeeEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-E
Q 018675          151 NEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-K  228 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~  228 (352)
                      .... ...+.. ......++++| ++.++++-..++.|..++.....      ...+...  +.......|+|+|+++ +
T Consensus       215 ~~~~-~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~------~~~~~~~--~~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          215 GFKV-ITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE------TTPLFTI--QDSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             TSCS-EEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE------EEEEEEC--SSSSCCEEEEECTTSSEE
T ss_pred             ceee-eeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc------EEEEEEc--CCCCcceeEEEcCCCCEE
Confidence            2110 011111 12345678899 66666666667888888754321      1111111  1123466899999999 4


Q ss_pred             EEEEeCCCcEEEEcCC
Q 018675          229 LVSCSDDLTIKIWGAD  244 (352)
Q Consensus       229 l~s~~~dg~i~iwd~~  244 (352)
                      +++-...++|..++.+
T Consensus       285 yv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEETTTTEEEEEEEE
T ss_pred             EEEECCCCEEEEEeCC
Confidence            5565677889988754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.58  E-value=0.0071  Score=57.52  Aligned_cols=113  Identities=17%  Similarity=0.209  Sum_probs=71.2

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------cEEEEEccCCceeeeEeecc-ccCCeeEEEECCCCcEEEEeeC-CCcEEE
Q 018675           79 SCAWSP-SGKLLATASFDA-----------TTCIWEDVGGDYECVATLEG-HENEVKSVSWNASGTLLATCGR-DKSVWI  144 (352)
Q Consensus        79 ~~~~s~-~~~~l~s~~~d~-----------~i~i~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~-d~~v~v  144 (352)
                      ++++.+ ++++++.|+.+.           .+.+||..++++..+..+.. +.....++++..++.+++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556777 889999988653           47788887776655544432 2223335677788999998884 458999


Q ss_pred             EecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEe-CC-----CcEEEEecC
Q 018675          145 WEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YD-----NTIKVWWAE  193 (352)
Q Consensus       145 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d-----~~i~iw~~~  193 (352)
                      ||.... ....+..+. ....-.++...+++++++.|+ .+     ..+.+||..
T Consensus       270 yd~~t~-~W~~~~~~~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          270 YDSSSD-SWIPGPDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             EEGGGT-EEEECCCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             ecCcCC-ceeECCCCC-ccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            997643 222221111 111122455667888888888 34     468888764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.57  E-value=0.031  Score=48.06  Aligned_cols=236  Identities=12%  Similarity=0.187  Sum_probs=119.5

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEe-eccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCee
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVAT-LEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF  153 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  153 (352)
                      ..+.++.|.+++..+++ +.++.+....+....+..+.. .......+.++.+.+ +..+ .++.++.|.. ....+...
T Consensus        36 ~~~~~v~~~~~~~~~~~-G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~-~~g~~g~i~~-S~DgG~tW  111 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLV-GVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGW-IVGEPPIMLH-TTDGGQSW  111 (327)
T ss_dssp             SCEEEEEESSSSCEEEE-ETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEE-EEEETTEEEE-ESSTTSSC
T ss_pred             CcEEEEEECCCCcEEEE-cCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEE-EEECCCeEEE-ECCCCCCc
Confidence            46889999877777774 556765333222223332221 111234688898876 4444 4556665433 22234443


Q ss_pred             EEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe
Q 018675          154 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS  233 (352)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~  233 (352)
                      ..+.....+...+..+.+.+++..++ ++.++.|  |...+ ...+|.....      +....+.++.+.|++.+++.+.
T Consensus       112 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~g~v--~~S~D-gG~tW~~~~~------~~~~~~~~~~~~~~~~~~~~g~  181 (327)
T 2xbg_A          112 SQIPLDPKLPGSPRLIKALGNGSAEM-ITNVGAI--YRTKD-SGKNWQALVQ------EAIGVMRNLNRSPSGEYVAVSS  181 (327)
T ss_dssp             EECCCCTTCSSCEEEEEEEETTEEEE-EETTCCE--EEESS-TTSSEEEEEC------SCCCCEEEEEECTTSCEEEEET
T ss_pred             eECccccCCCCCeEEEEEECCCCEEE-EeCCccE--EEEcC-CCCCCEEeec------CCCcceEEEEEcCCCcEEEEEC
Confidence            33221111223456666666555444 4456654  32222 2234544321      2345688999999988877665


Q ss_pred             CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeec
Q 018675          234 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK  313 (352)
Q Consensus       234 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~  313 (352)
                      ..+.++-.|-         +...|.....   .....+..+.+.+++.+..++.+|.++......     ......+...
T Consensus       182 ~G~~~~S~d~---------gG~tW~~~~~---~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~-----G~tW~~~~~~  244 (327)
T 2xbg_A          182 RGSFYSTWEP---------GQTAWEPHNR---TTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-----SENWGELLSP  244 (327)
T ss_dssp             TSSEEEEECT---------TCSSCEEEEC---CSSSCEEEEEECTTSCEEEEETTTEEEEEETTE-----EEEECCCBCT
T ss_pred             CCcEEEEeCC---------CCCceeECCC---CCCCccceeEECCCCCEEEEeCCceEEEecCCC-----CCeeEeccCC
Confidence            4433333331         1134443321   223456677777777666666677765542110     1111111111


Q ss_pred             ccccCcceeEEEecCCCcceEEEecCCCeE
Q 018675          314 EKAHDMDVNSVQWSPGERRLLASASDDGMI  343 (352)
Q Consensus       314 ~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i  343 (352)
                      ...+...+.++++.|++. +++.+ .+|.|
T Consensus       245 ~~~~~~~~~~v~~~~~~~-~~~~g-~~g~i  272 (327)
T 2xbg_A          245 LRRNSVGFLDLAYRTPNE-VWLAG-GAGAL  272 (327)
T ss_dssp             TSSCCSCEEEEEESSSSC-EEEEE-STTCE
T ss_pred             cccCCcceEEEEecCCCE-EEEEe-CCCeE
Confidence            012334588999988664 55544 46655

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.54  E-value=0.075  Score=51.67  Aligned_cols=292  Identities=8%  Similarity=0.084  Sum_probs=154.0

Q ss_pred             eEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEc
Q 018675           24 VWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWED  103 (352)
Q Consensus        24 V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~  103 (352)
                      |.++...++      +.+.+ +..++-+..|+..+....    ..........|.++...++|.+.+ |+.++.+.+|+.
T Consensus       175 i~~i~~d~~------g~lwi-gt~~~Gl~~~~~~~~~~~----~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~  242 (795)
T 4a2l_A          175 IASTLYRQG------DQIYI-GTSTDGLYTYSITQKTFE----KVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINP  242 (795)
T ss_dssp             CEEEEEEET------TEEEE-EESSSCEEEEETTTCCEE----ECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEET
T ss_pred             eEEEEECCC------CCEEE-EECCCCEEEEeCCCCeEE----EecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeC
Confidence            666665543      23333 455545777876554211    110011235688888887777655 454545888887


Q ss_pred             cCCceeeeEeec-----cccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEe-----ecCccCeeEEEEcC
Q 018675          104 VGGDYECVATLE-----GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL-----QGHAQDVKMVQWHP  173 (352)
Q Consensus       104 ~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-----~~h~~~v~~~~~~~  173 (352)
                      .++.........     -....|.++...++|.+.+.. .+ -|.+++.... ........     .-....|.++...+
T Consensus       243 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~D~  319 (795)
T 4a2l_A          243 KTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTD-SFASYSSNPVENGSLSQRSVRSIFMDS  319 (795)
T ss_dssp             TTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS-CEEEEETTTT-EEEEECCCTTSTTSCSSSCEEEEEECT
T ss_pred             CCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC-hhheEcCCCC-eEEEEecCCCCCCCCCCCcEEEEEEeC
Confidence            655432221110     013568999988888876543 44 4888886433 22111100     00124578888877


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCC
Q 018675          174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG  253 (352)
Q Consensus       174 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  253 (352)
                      ++. +..|+.++-|..|+....   .+...........-....|.++...++|.+.+ |+.++-|..|+...........
T Consensus       320 ~g~-lWigt~~~Gl~~~~~~~~---~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~  394 (795)
T 4a2l_A          320 QGG-MWLGTYFGGLNYYHPIRN---RFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTL  394 (795)
T ss_dssp             TSC-EEEEESSSCEEEECGGGG---SSEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECC
T ss_pred             CcC-EEEEECCCCeEEeCCCcc---cceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEec
Confidence            776 567777778888854322   12111111100111245799999999988666 5666668888754322110000


Q ss_pred             CccceeeEEee-cccCcceEEEEecCCce-EEecCCCCeEEEEEccCCccccCcccceeee-cccccCcceeEEEecCCC
Q 018675          254 YASWRHLCTIS-GYHDRTIFSVHWSREGI-IASGAADDSVQFFVESKDDLIDGPSYKMLLK-KEKAHDMDVNSVQWSPGE  330 (352)
Q Consensus       254 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~~~~sp~~  330 (352)
                           ...... +.....|.++..++++. +-.|..++.+..++.......      .... ........|.++...+++
T Consensus       395 -----~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~------~~~~~~~~l~~~~v~~i~~d~~g  463 (795)
T 4a2l_A          395 -----QEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE------NFNQRNSQLVNENVYAILPDGEG  463 (795)
T ss_dssp             -----C------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE------EECTTTSCCSCSCEEEEEECSSS
T ss_pred             -----CCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE------EeecCCCCcCCCeeEEEEECCCC
Confidence                 000000 11235678888777776 777777677777765432110      0000 001234578999988877


Q ss_pred             cceEEEecCCCeEEEEeec
Q 018675          331 RRLLASASDDGMIKIWELA  349 (352)
Q Consensus       331 ~~~l~s~~~Dg~i~iw~~~  349 (352)
                      . +.+ |+.+| |.+|+..
T Consensus       464 ~-lwi-gt~~G-l~~~~~~  479 (795)
T 4a2l_A          464 N-LWL-GTLSA-LVRFNPE  479 (795)
T ss_dssp             C-EEE-EESSC-EEEEETT
T ss_pred             C-EEE-EecCc-eeEEeCC
Confidence            5 443 33344 6666653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.53  E-value=0.04  Score=50.91  Aligned_cols=190  Identities=11%  Similarity=0.074  Sum_probs=111.5

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEE-C-CCCCEEEEEe------------------CCCcEE
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAW-S-PSGKLLATAS------------------FDATTC   99 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s-~~~~~l~s~~------------------~d~~i~   99 (352)
                      .++++...++.|.+-|+.+.+.    ..++.--.......+++ + |+++++.+++                  .++.+.
T Consensus       103 ~lfVnd~~~~rVavIdl~t~~~----~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          103 FLFMNDKANTRVARVRCDVMKC----DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE----EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCceE----eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            3455555667899999887642    22221111234567777 5 8999988774                  234677


Q ss_pred             EEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCC--------------------------------------c
Q 018675          100 IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK--------------------------------------S  141 (352)
Q Consensus       100 i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--------------------------------------~  141 (352)
                      +.|..+.+  ....+.- .+....++.+|+|.++++++.+.                                      .
T Consensus       179 vID~~t~~--v~~qI~V-gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          179 AVDADKWE--VAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEETTTTE--EEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEECCCCe--EEEEEEe-CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            77766543  2232221 11345677899999988887553                                      3


Q ss_pred             EEEEecCC--CCe-eEEEEEeecCccCeeEEEEcCCCCEEEEEe-CCCcEEEEecCCCC------CC-CceeEeeeeccC
Q 018675          142 VWIWEVMP--GNE-FECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTD------SD-NWHCVQTISESN  210 (352)
Q Consensus       142 v~vwd~~~--~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~------~~-~~~~~~~~~~~~  210 (352)
                      |.|.|...  +.. ...+..    .....++.++||++++++++ .+..+.++++....      .. .......+    
T Consensus       256 V~VID~~~~~~~~~~~~Ipv----g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v----  327 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP----  327 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC----
T ss_pred             EEEEeCcccCCceeEEEEec----CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc----
Confidence            44555443  111 111111    11344688999999877665 57889999876321      00 00011111    


Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          211 NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       211 ~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                       .-+.....++|+|+|...++.--|+.|.+|+++.
T Consensus       328 -~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          328 -ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             -BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             -CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence             1234577899999995556677899999998753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.51  E-value=0.034  Score=47.16  Aligned_cols=237  Identities=15%  Similarity=0.115  Sum_probs=119.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCC--cEEEEecCCCCee
Q 018675           76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK--SVWIWEVMPGNEF  153 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~v~vwd~~~~~~~  153 (352)
                      ....++|+++|+++++-..++.|..++..+. ......   ....+..+++.++++++++.....  .|..+|...+. .
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~---~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~-~  107 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT---VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT-V  107 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE---CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC-E
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe---CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe-E
Confidence            4577899999998777767888988876543 222222   234688999999999766654432  35556654443 2


Q ss_pred             EEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEee-eec-cCCCCcccEEEEEEcCCCCEE-E
Q 018675          154 ECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQT-ISE-SNNGHSSTIWALSFNAKGDKL-V  230 (352)
Q Consensus       154 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~~-~~~~h~~~i~~l~~~~~~~~l-~  230 (352)
                      ..+... ........+...+.+..+++-..++.|..++...... ....... +.. ...+.....+.|  +|++.+| +
T Consensus       108 ~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~-~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv  183 (306)
T 2p4o_A          108 ETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG-SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV  183 (306)
T ss_dssp             EEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE-EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred             EEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE-eEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence            222221 1111223334444444444444577777776432100 0000000 000 001111234555  7787654 5


Q ss_pred             EEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccce
Q 018675          231 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKM  309 (352)
Q Consensus       231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~  309 (352)
                      +-...++|..++.+....     ..........     .....+++++++ ++++....+.|..++.... +      ..
T Consensus       184 ~d~~~~~I~~~~~~~~g~-----~~~~~~~~~~-----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~-~------~~  246 (306)
T 2p4o_A          184 SNTEKMLLLRIPVDSTDK-----PGEPEIFVEQ-----TNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-T------TI  246 (306)
T ss_dssp             EETTTTEEEEEEBCTTSC-----BCCCEEEEES-----CCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-E------EE
T ss_pred             EeCCCCEEEEEEeCCCCC-----CCccEEEecc-----CCCCCeEECCCCCEEEEeCCCCeEEEECCCCC-E------EE
Confidence            555678899998753100     0000111110     123345666665 4444445667777754311 0      00


Q ss_pred             eeecccccCcceeEEEec---CCCcceEEEecC
Q 018675          310 LLKKEKAHDMDVNSVQWS---PGERRLLASASD  339 (352)
Q Consensus       310 ~~~~~~~h~~~i~~~~~s---p~~~~~l~s~~~  339 (352)
                       +..........++++|.   |+++.++++.+.
T Consensus       247 -~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          247 -IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             -EECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -EeecccccCCceEEEEecccCCCCEEEEECCC
Confidence             11111112458899998   887777776653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.45  E-value=0.035  Score=45.76  Aligned_cols=168  Identities=13%  Similarity=0.184  Sum_probs=100.6

Q ss_pred             cceEEEEECCCCCEE-EEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCee
Q 018675           75 RTVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF  153 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l-~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  153 (352)
                      ..+..++++|++..| ++...++.|...|.. ++......+.+ ......|++.+++.++++.-.++.+.++++......
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i  104 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV  104 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence            468899999976654 456667777777765 44322222333 245778888888877676656778888887654432


Q ss_pred             EEEEEee------cCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCC-CCceeEeeeeccCCCCcccEEEEEEcCC-
Q 018675          154 ECVSVLQ------GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS-DNWHCVQTISESNNGHSSTIWALSFNAK-  225 (352)
Q Consensus       154 ~~~~~~~------~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~h~~~i~~l~~~~~-  225 (352)
                      ..+....      ......-.++|.|.+..|+++.+.....+|....... ...............+...+.+|+++|. 
T Consensus       105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t  184 (255)
T 3qqz_A          105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK  184 (255)
T ss_dssp             EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred             eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence            2222211      1234567999999988888887766666665432111 1111110000000112335678999996 


Q ss_pred             CCEEEEEeCCCcEEEEcCC
Q 018675          226 GDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       226 ~~~l~s~~~dg~i~iwd~~  244 (352)
                      +++++....+..+.++|.+
T Consensus       185 g~lliLS~~s~~L~~~d~~  203 (255)
T 3qqz_A          185 NTLLVLSHESRALQEVTLV  203 (255)
T ss_dssp             TEEEEEETTTTEEEEECTT
T ss_pred             CeEEEEECCCCeEEEEcCC
Confidence            5566677777888888865

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.42  E-value=0.1  Score=50.62  Aligned_cols=293  Identities=9%  Similarity=0.159  Sum_probs=155.9

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeee---eecceecceEEEEECCCCCEEEEEeCCCcE
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAV---LEEMHTRTVRSCAWSPSGKLLATASFDATT   98 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   98 (352)
                      ..|+++...++      +.+. .|..+ -|.+|+..+.. +......   ........|.++...++|.+- .|+.++.+
T Consensus       263 ~~i~~i~~d~~------g~lW-igt~~-Gl~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl  332 (795)
T 4a2l_A          263 NYIRSLAMDSQ------NRLW-IGTFN-DLNIYHEGTDS-FASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGL  332 (795)
T ss_dssp             SBEEEEEECTT------SCEE-EEESS-CEEEEETTTTE-EEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCE
T ss_pred             CeEEEEEEcCC------CCEE-EEeCC-hhheEcCCCCe-EEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCe
Confidence            46777776654      2333 33344 57778866542 1111100   001123579999999988754 47777788


Q ss_pred             EEEEccCCceeeeEeec----cccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEee------cCccCeeE
Q 018675           99 CIWEDVGGDYECVATLE----GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ------GHAQDVKM  168 (352)
Q Consensus        99 ~i~~~~~~~~~~~~~~~----~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~------~h~~~v~~  168 (352)
                      ..++..+..........    -....|.++...++|.+.+ |+.++-|..|+..... ........      -....|.+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~  410 (795)
T 4a2l_A          333 NYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQR-FTSYTLQEDESARGIGSNNIKA  410 (795)
T ss_dssp             EEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTTTCC-EEEECCC------CCSCSCEEE
T ss_pred             EEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCc-EEEEecCCCCcccCCCCccEEE
Confidence            88876544332221111    0234689998888887655 5666668888865432 11111000      11346788


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeec-cCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccc
Q 018675          169 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE-SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITR  247 (352)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~  247 (352)
                      +...+++..|..|+.++.+..++.....   .   ..+.. ........|.++...++|.+.++.. +| +.+|+.+...
T Consensus       411 i~~d~~g~~lWigt~~~Gl~~~d~~~~~---~---~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~  482 (795)
T 4a2l_A          411 VYVDEKKSLVYIGTHAGGLSILHRNSGQ---V---ENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRS  482 (795)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEETTTCC---E---EEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTE
T ss_pred             EEEcCCCCEEEEEeCcCceeEEeCCCCc---E---EEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCe
Confidence            8887787756778887778888754321   1   11111 0112345799999999998777554 44 7778754322


Q ss_pred             cccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEec
Q 018675          248 MQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS  327 (352)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  327 (352)
                      .........      ........+.++..++++.+-.+..+ .+..++...... .   ..............|.++...
T Consensus       483 ~~~~~~~~~------~~~~~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~-~---~~~~~~~~~l~~~~i~~i~~d  551 (795)
T 4a2l_A          483 FTTIEKEKD------GTPVVSKQITTLFRDSHKRLWIGGEE-GLSVFKQEGLDI-Q---KASILPVSNVTKLFTNCIYEA  551 (795)
T ss_dssp             EEECCBCTT------CCBCCCCCEEEEEECTTCCEEEEESS-CEEEEEEETTEE-E---ECCCSCSCGGGGSCEEEEEEC
T ss_pred             EEEcccccc------ccccCCceEEEEEECCCCCEEEEeCC-ceEEEeCCCCeE-E---EecCCCCCCCCCCeeEEEEEC
Confidence            111000000      00112345777877777755555554 455554432211 0   000000011234578999988


Q ss_pred             CCCcceEEEecCCCeEEEEee
Q 018675          328 PGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       328 p~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      +++. +.+++ ..| |..|+.
T Consensus       552 ~~g~-lWigT-~~G-l~~~d~  569 (795)
T 4a2l_A          552 SNGI-IWVGT-REG-FYCFNE  569 (795)
T ss_dssp             TTSC-EEEEE-SSC-EEEEET
T ss_pred             CCCC-EEEEe-CCC-ceeECC
Confidence            8876 44333 334 555654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.37  E-value=0.052  Score=46.00  Aligned_cols=208  Identities=13%  Similarity=0.086  Sum_probs=115.4

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      +.+..+... ....+++|.|+      +.++++-..++.|..|+......     ....  .......++++++|+++++
T Consensus        23 ~~~~~~p~~-~~pegia~~~~------g~lyv~d~~~~~I~~~d~~g~~~-----~~~~--~~~~p~gia~~~dG~l~va   88 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPD------GTIFVTNHEVGEIVSITPDGNQQ-----IHAT--VEGKVSGLAFTSNGDLVAT   88 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTT------SCEEEEETTTTEEEEECTTCCEE-----EEEE--CSSEEEEEEECTTSCEEEE
T ss_pred             eEeEeCCCC-CCcceEEECCC------CCEEEEeCCCCeEEEECCCCceE-----EEEe--CCCCceeEEEcCCCcEEEE
Confidence            445555432 45678999886      35677766788999898764311     1111  1245788999999997766


Q ss_pred             EeCCCc--EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEE--------eec
Q 018675           92 ASFDAT--TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSV--------LQG  161 (352)
Q Consensus        92 ~~~d~~--i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--------~~~  161 (352)
                      ......  +..++..+++...+..... ......++..+.+..+++-..++.|.++|...+. ......        ...
T Consensus        89 d~~~~~~~v~~~d~~~g~~~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~-~~v~~~~~~~~~~~~~~  166 (306)
T 2p4o_A           89 GWNADSIPVVSLVKSDGTVETLLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS-GSIWLEHPMLARSNSES  166 (306)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE-EEEEEECGGGSCSSTTC
T ss_pred             eccCCcceEEEEcCCCCeEEEEEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCc-EeEEEECCccccccccC
Confidence            544333  5555655555443333221 1223444545555555555567888888754321 111100        000


Q ss_pred             CccCeeEEEEcCCCCEEEE-EeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 018675          162 HAQDVKMVQWHPTMDVLFS-CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI  240 (352)
Q Consensus       162 h~~~v~~~~~~~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~i  240 (352)
                      .......+  +|++..|+. -...+.|..++....  ........+..     ......++++++|.++++....+.|.+
T Consensus       167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~--g~~~~~~~~~~-----~~~P~gi~vd~dG~l~va~~~~~~V~~  237 (306)
T 2p4o_A          167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST--DKPGEPEIFVE-----QTNIDDFAFDVEGNLYGATHIYNSVVR  237 (306)
T ss_dssp             CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT--SCBCCCEEEEE-----SCCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred             CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC--CCCCccEEEec-----cCCCCCeEECCCCCEEEEeCCCCeEEE
Confidence            11123344  777776554 445678888886531  11100111110     012345789999998888877889999


Q ss_pred             EcCC
Q 018675          241 WGAD  244 (352)
Q Consensus       241 wd~~  244 (352)
                      ++.+
T Consensus       238 ~~~~  241 (306)
T 2p4o_A          238 IAPD  241 (306)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            9753

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.25  E-value=0.084  Score=46.00  Aligned_cols=256  Identities=13%  Similarity=0.113  Sum_probs=132.3

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccC
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHEN  119 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~  119 (352)
                      ..++.++.|+.|..+|..+++..|+....- .....++    .  .+..++.++.++.+..+|..+++..  ...... .
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~~~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~--W~~~~~-~  173 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAG-EALSRPV----V--SDGLVLIHTSNGQLQALNEADGAVK--WTVNLD-M  173 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECSS-CCCSCCE----E--ETTEEEEECTTSEEEEEETTTCCEE--EEEECC-C
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEEeCCC-ceEcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEE--EEEeCC-C
Confidence            457777889999999999888777543211 1111111    1  2456777888999999998776532  121111 1


Q ss_pred             Ce------eEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCcc-------CeeEEEEcC--CCCEEEEEeCC
Q 018675          120 EV------KSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQ-------DVKMVQWHP--TMDVLFSCSYD  184 (352)
Q Consensus       120 ~v------~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~-------~v~~~~~~~--~~~~l~s~~~d  184 (352)
                      .+      .....  .+..++.+..++.+..+|...++..   ........       .+..+...|  .+..++.++.+
T Consensus       174 ~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~---w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~  248 (376)
T 3q7m_A          174 PSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMI---WQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYN  248 (376)
T ss_dssp             -----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEE---EEEECCC-----------CCCCCCEEETTEEEEECTT
T ss_pred             CceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEE---EEEecccCCCCcccccccccCCCcEEECCEEEEEecC
Confidence            11      11111  1346777888899999998766532   11111100       000000111  24567788889


Q ss_pred             CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEee
Q 018675          185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS  264 (352)
Q Consensus       185 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  264 (352)
                      +.+..++.....     ......  .    .....+..  ++..+..++.++.+..+|.+..+.       .|+.    .
T Consensus       249 g~l~~~d~~tG~-----~~w~~~--~----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~-------~w~~----~  304 (376)
T 3q7m_A          249 GNLTALDLRSGQ-----IMWKRE--L----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT-------LWTQ----S  304 (376)
T ss_dssp             SCEEEEETTTCC-----EEEEEC--C----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE-------EEEE----C
T ss_pred             cEEEEEECCCCc-----EEeecc--C----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE-------EEee----c
Confidence            999999765432     111111  1    11223333  356777788899999998653221       1211    0


Q ss_pred             cccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeE-EEecCCCcceEEEecCCCeE
Q 018675          265 GYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNS-VQWSPGERRLLASASDDGMI  343 (352)
Q Consensus       265 ~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~sp~~~~~l~s~~~Dg~i  343 (352)
                      ............ .++.+..++.++.+..++.....+.         .........+.. ... .++ .++ .++.||.|
T Consensus       305 ~~~~~~~~~~~~-~~~~l~v~~~~g~l~~~d~~tG~~~---------~~~~~~~~~~~~~~~~-~~~-~l~-v~~~~G~l  371 (376)
T 3q7m_A          305 DLLHRLLTSPVL-YNGNLVVGDSEGYLHWINVEDGRFV---------AQQKVDSSGFQTEPVA-ADG-KLL-IQAKDGTV  371 (376)
T ss_dssp             TTTTSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEE---------EEEECCTTCBCSCCEE-ETT-EEE-EEBTTSCE
T ss_pred             ccCCCcccCCEE-ECCEEEEEeCCCeEEEEECCCCcEE---------EEEecCCCcceeCCEE-ECC-EEE-EEeCCCEE
Confidence            000011111111 2467778888898888875433221         111111112221 222 244 344 57889999


Q ss_pred             EEEe
Q 018675          344 KIWE  347 (352)
Q Consensus       344 ~iw~  347 (352)
                      ..|+
T Consensus       372 ~~~~  375 (376)
T 3q7m_A          372 YSIT  375 (376)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8886

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.23  E-value=0.1  Score=49.57  Aligned_cols=196  Identities=12%  Similarity=0.141  Sum_probs=103.3

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeeccee-----cce-EEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEe
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT-----RTV-RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVAT  113 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~-----~~v-~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~  113 (352)
                      ..++.++.++.|.-+|..+++.+|+..........     ..+ ..+++  .+..++.++.|+.+..+|..+++..=...
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence            46777788999999999999988876432111000     000 11112  34567778889999999988776321111


Q ss_pred             ecccc--CCeeE-EEECCCCcEEEEeeC------CCcEEEEecCCCCeeEEEEEeecCc---------------------
Q 018675          114 LEGHE--NEVKS-VSWNASGTLLATCGR------DKSVWIWEVMPGNEFECVSVLQGHA---------------------  163 (352)
Q Consensus       114 ~~~h~--~~v~~-v~~~~~~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~h~---------------------  163 (352)
                      .....  ..+.+ ... .++ .++.+..      ++.|..+|...++..-......+..                     
T Consensus       145 ~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~  222 (668)
T 1kv9_A          145 TTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (668)
T ss_dssp             CSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             cCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence            11110  11111 001 133 4444432      5889999987776422221111100                     


Q ss_pred             -------cCeeEEEEcCCCCEEEEEeCCCc-------------------EEEEecCCCCCCCceeEeeeeccCCCCc---
Q 018675          164 -------QDVKMVQWHPTMDVLFSCSYDNT-------------------IKVWWAEDTDSDNWHCVQTISESNNGHS---  214 (352)
Q Consensus       164 -------~~v~~~~~~~~~~~l~s~~~d~~-------------------i~iw~~~~~~~~~~~~~~~~~~~~~~h~---  214 (352)
                             .....+++.|....++.++.++.                   |..+|..... ..|.    ...  ..|.   
T Consensus       223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~-~~W~----~~~--~~~~~wd  295 (668)
T 1kv9_A          223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK-LAWH----YQV--TPGDSWD  295 (668)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC-EEEE----EES--STTCCSC
T ss_pred             eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc-eeeE----eec--CCCcccc
Confidence                   00123577787778887776653                   6666554321 1121    111  0111   


Q ss_pred             ----ccEEEEEEcCCCC---EEEEEeCCCcEEEEcCCcc
Q 018675          215 ----STIWALSFNAKGD---KLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       215 ----~~i~~l~~~~~~~---~l~s~~~dg~i~iwd~~~~  246 (352)
                          .+.....+..+|+   .++.++.+|.+.++|.+..
T Consensus       296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG  334 (668)
T 1kv9_A          296 FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG  334 (668)
T ss_dssp             CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             ccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC
Confidence                2222223333554   6888999999999986543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.13  E-value=0.055  Score=46.13  Aligned_cols=159  Identities=10%  Similarity=0.105  Sum_probs=97.8

Q ss_pred             EEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeec-----ceecceEEEEE---CCCCCEEEEEe----
Q 018675           26 SLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE-----MHTRTVRSCAW---SPSGKLLATAS----   93 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~---s~~~~~l~s~~----   93 (352)
                      ++.|++.+     +.++++.-..++|..|+...+... ..  .+..     .....+..+.|   .|+++++++..    
T Consensus        17 ~~~wd~~~-----g~~~vs~l~~g~V~~~~~~~~~~~-~~--~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a   88 (334)
T 2p9w_A           17 DTIYDRTR-----QVFYQSNLYKGRIEVYNPKTQSHF-NV--VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS   88 (334)
T ss_dssp             CEEEETTT-----TEEEEEETTTTEEEEECTTTCCEE-EE--CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred             CccCcCCC-----CEEEEEeccCCEEEEEcCCCCeEE-EE--ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence            67888764     345555558999999998754321 11  1111     00124578899   68888887543    


Q ss_pred             ---------CCCcEEEEEcc---CCceeeeEeecccc-----------CCeeEEEECCCCcEEEEeeCC-CcEEEEecCC
Q 018675           94 ---------FDATTCIWEDV---GGDYECVATLEGHE-----------NEVKSVSWNASGTLLATCGRD-KSVWIWEVMP  149 (352)
Q Consensus        94 ---------~d~~i~i~~~~---~~~~~~~~~~~~h~-----------~~v~~v~~~~~~~~l~s~~~d-~~v~vwd~~~  149 (352)
                               .+..+..||..   +++......+....           .....+...++|+..++++.- +.|...+.. 
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-  167 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-  167 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-
Confidence                     25678888877   45433333332211           247789999999999988877 765544432 


Q ss_pred             CCeeEEEEEee---cCccCeeEEEEcCCCCEEEEEeCCCcEEEEecC
Q 018675          150 GNEFECVSVLQ---GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE  193 (352)
Q Consensus       150 ~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~  193 (352)
                      +........-.   ......+.+.++|++..|++....+.+..+|+.
T Consensus       168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            22221111101   111235689999999988888779999999876

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.95  E-value=0.17  Score=44.05  Aligned_cols=271  Identities=8%  Similarity=0.052  Sum_probs=133.2

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecc--e--ecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeec
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM--H--TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE  115 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~--h--~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~  115 (352)
                      ..++.++.++.|..+|..+++..|.........  +  ...+.+ ....++..+..++.++.+..+|..+++.. . ...
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~-W-~~~  130 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVA-W-QTK  130 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEE-E-EEE
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEE-E-EEe
Confidence            567777889999999999888777643211000  0  112221 12224566777888999999998777532 1 222


Q ss_pred             cccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCe-----eEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          116 GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV-----KMVQWHPTMDVLFSCSYDNTIKVW  190 (352)
Q Consensus       116 ~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~s~~~d~~i~iw  190 (352)
                      ...........  .+..++.++.++.+..+|...++..   ..........     .....  .+..++.+..++.+..+
T Consensus       131 ~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~---W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~  203 (376)
T 3q7m_A          131 VAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVK---WTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAV  203 (376)
T ss_dssp             CSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEE---EEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEE
T ss_pred             CCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEE---EEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEE
Confidence            11111111111  1346777888999999998766532   2222111100     11111  13467778888889988


Q ss_pred             ecCCCCCCCceeEeeeeccCCCCc--ccEEEEEEcC--CCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecc
Q 018675          191 WAEDTDSDNWHCVQTISESNNGHS--STIWALSFNA--KGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGY  266 (352)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  266 (352)
                      +..... ..|..  .... ..+..  ..+..+...|  .+..+..++.++.+..+|.+..+.       .|...      
T Consensus       204 d~~tG~-~~w~~--~~~~-~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~-------~w~~~------  266 (376)
T 3q7m_A          204 LMEQGQ-MIWQQ--RISQ-ATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI-------MWKRE------  266 (376)
T ss_dssp             ETTTCC-EEEEE--ECCC------------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE-------EEEEC------
T ss_pred             ECCCCc-EEEEE--eccc-CCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE-------Eeecc------
Confidence            765432 11111  1100 00000  0000000111  245677777889999998653221       12211      


Q ss_pred             cCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEE
Q 018675          267 HDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW  346 (352)
Q Consensus       267 ~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw  346 (352)
                       ......+.. .++.+..++.++.+..++.......        -.........+...... ++ . |..++.+|.|.++
T Consensus       267 -~~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~~~--------w~~~~~~~~~~~~~~~~-~~-~-l~v~~~~g~l~~~  333 (376)
T 3q7m_A          267 -LGSVNDFIV-DGNRIYLVDQNDRVMALTIDGGVTL--------WTQSDLLHRLLTSPVLY-NG-N-LVVGDSEGYLHWI  333 (376)
T ss_dssp             -CCCEEEEEE-ETTEEEEEETTCCEEEEETTTCCEE--------EEECTTTTSCCCCCEEE-TT-E-EEEECTTSEEEEE
T ss_pred             -CCCCCCceE-ECCEEEEEcCCCeEEEEECCCCcEE--------EeecccCCCcccCCEEE-CC-E-EEEEeCCCeEEEE
Confidence             111222222 2456666667778877765432211        01110111122222332 23 3 4457778888888


Q ss_pred             eecc
Q 018675          347 ELAN  350 (352)
Q Consensus       347 ~~~~  350 (352)
                      |..+
T Consensus       334 d~~t  337 (376)
T 3q7m_A          334 NVED  337 (376)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            8654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.90  E-value=0.15  Score=43.50  Aligned_cols=161  Identities=9%  Similarity=0.127  Sum_probs=97.7

Q ss_pred             EEEEECCCC-CEEEEEeCCCcEEEEEccCCceeeeEeecc----ccC--CeeEEEE---CCCCcEEEEee----------
Q 018675           78 RSCAWSPSG-KLLATASFDATTCIWEDVGGDYECVATLEG----HEN--EVKSVSW---NASGTLLATCG----------  137 (352)
Q Consensus        78 ~~~~~s~~~-~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~----h~~--~v~~v~~---~~~~~~l~s~~----------  137 (352)
                      .+++|.+.. +++++.-..++|..|+...+....+ .+.+    .+.  .+..+.|   .|++.++++..          
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            456787744 4555555789999998764443333 3332    111  3578999   68877776543          


Q ss_pred             ---CCCcEEEEecC---CCCeeEEEEEeecCc-----------cCeeEEEEcCCCCEEEEEeCC-CcEEEEecCCCCCCC
Q 018675          138 ---RDKSVWIWEVM---PGNEFECVSVLQGHA-----------QDVKMVQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDN  199 (352)
Q Consensus       138 ---~d~~v~vwd~~---~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~l~s~~~d-~~i~iw~~~~~~~~~  199 (352)
                         .+..|..+|+.   .++.... ..+....           .....++..++++..++++.- +.|...+.....   
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~-~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~---  170 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWS-VNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT---  170 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEE-EESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC---
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEE-ecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE---
Confidence               26778899987   4443222 1222111           236788899999988888877 776555332211   


Q ss_pred             ceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          200 WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       200 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      .... -+...........+.+.++|+|..|+.....|.+..+|++
T Consensus       171 ~~~~-~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          171 VSTF-AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEE-EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             Eeee-eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            1100 0111111122346689999999988887779999999876

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.75  E-value=0.27  Score=43.43  Aligned_cols=118  Identities=19%  Similarity=0.209  Sum_probs=76.2

Q ss_pred             CeeEEEECCCCcEEEEeeCCCcEEEEecCCCC----------eeEEEEEeec------CccCeeEEEEcCC---CCEEEE
Q 018675          120 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGN----------EFECVSVLQG------HAQDVKMVQWHPT---MDVLFS  180 (352)
Q Consensus       120 ~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~----------~~~~~~~~~~------h~~~v~~~~~~~~---~~~l~s  180 (352)
                      .|..+..+|+|++|+..+. ..|.|-.++.+.          ..++ ..+.-      ...+|..+.|||-   +..|++
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~-~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQI-FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEE-EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccce-eEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            5778999999999887755 578888876221          0111 22221      2457999999995   568999


Q ss_pred             EeCCCcEEEEecCCCCCCCceeEeeee--ccCCCCcccEEEEEEcCCCCEEEE--EeCCCcEEE
Q 018675          181 CSYDNTIKVWWAEDTDSDNWHCVQTIS--ESNNGHSSTIWALSFNAKGDKLVS--CSDDLTIKI  240 (352)
Q Consensus       181 ~~~d~~i~iw~~~~~~~~~~~~~~~~~--~~~~~h~~~i~~l~~~~~~~~l~s--~~~dg~i~i  240 (352)
                      -..|+.|++|++........ .+....  .........|.+++|.+++-.|-.  .+.+|.|.-
T Consensus       145 LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             EecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            99999999999876322221 111000  011233467899999998765555  447776643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.71  E-value=0.19  Score=41.30  Aligned_cols=196  Identities=7%  Similarity=-0.021  Sum_probs=112.0

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCC-EEEEEeCCCcEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK-LLATASFDATTCIW  101 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~i~  101 (352)
                      ...+++|.|..     +.++++-...+.|..++......    ...... .-.....++++|++. +.++-...+.|.++
T Consensus        37 ~~~gi~~d~~~-----~~ly~~d~~~~~I~~~~~~g~~~----~~~~~~-~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~  106 (267)
T 1npe_A           37 VIIGLAFDCVD-----KVVYWTDISEPSIGRASLHGGEP----TTIIRQ-DLGSPEGIALDHLGRTIFWTDSQLDRIEVA  106 (267)
T ss_dssp             EEEEEEEETTT-----TEEEEEETTTTEEEEEESSSCCC----EEEECT-TCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cEEEEEEecCC-----CEEEEEECCCCEEEEEecCCCCc----EEEEEC-CCCCccEEEEEecCCeEEEEECCCCEEEEE
Confidence            45688888853     35666666778999998865431    111111 113568899999755 45555566788888


Q ss_pred             EccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC---CCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEE
Q 018675          102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR---DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVL  178 (352)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  178 (352)
                      +..+.....+  ..........++++|++..|+.+..   .+.|..+++.. .....+.  .........++++|++..|
T Consensus       107 ~~~g~~~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~--~~~~~~P~gia~d~~~~~l  181 (267)
T 1npe_A          107 KMDGTQRRVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILA--QDNLGLPNGLTFDAFSSQL  181 (267)
T ss_dssp             ETTSCSCEEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEE--CTTCSCEEEEEEETTTTEE
T ss_pred             EcCCCCEEEE--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEE--ECCCCCCcEEEEcCCCCEE
Confidence            8654322211  1211245789999996555444443   36777777643 2222211  1222346788999987665


Q ss_pred             EE-EeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCC
Q 018675          179 FS-CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       179 ~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~  244 (352)
                      +. -...+.|..++.....      ...+..   + ......++.. .+..+++....+.|..+|.+
T Consensus       182 yv~d~~~~~I~~~~~~g~~------~~~~~~---~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          182 CWVDAGTHRAECLNPAQPG------RRKVLE---G-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             EEEETTTTEEEEEETTEEE------EEEEEE---C-CCSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCEEEEEecCCCc------eEEEec---C-CCCceEEEEe-CCEEEEEECCCCeEEEEeCC
Confidence            54 4456788888764311      111111   1 1223466654 34455555567889888764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.40  E-value=0.49  Score=42.26  Aligned_cols=206  Identities=10%  Similarity=0.105  Sum_probs=109.3

Q ss_pred             ceEEEEEccC-CCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC---Cc-
Q 018675           23 RVWSLAWKPT-AGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD---AT-   97 (352)
Q Consensus        23 ~V~~i~~~p~-~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~-   97 (352)
                      .-.+++|.|+ ..    +.++++ ...+.|+.++..++...    ....  .......++|+++|+++++....   .. 
T Consensus       140 ~P~gvavd~~s~~----g~Lyv~-D~~~~I~~id~~~g~v~----~~~~--~~~~P~giavd~dG~lyVad~~~~~~~~g  208 (433)
T 4hw6_A          140 NIWRMMFDPNSNY----DDLYWV-GQRDAFRHVDFVNQYVD----IKTT--NIGQCADVNFTLNGDMVVVDDQSSDTNTG  208 (433)
T ss_dssp             CCCEEEECTTTTT----CEEEEE-CBTSCEEEEETTTTEEE----EECC--CCSCEEEEEECTTCCEEEEECCSCTTSEE
T ss_pred             CCceEEEccccCC----CEEEEE-eCCCCEEEEECCCCEEE----Eeec--CCCCccEEEECCCCCEEEEcCCCCcccce
Confidence            4457888873 11    234444 33378888887654321    1111  22357899999999955554322   12 


Q ss_pred             EEEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC
Q 018675           98 TCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD  176 (352)
Q Consensus        98 i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  176 (352)
                      +...+.. +.......+. .-.....+++.| ++.++++-..++.|..+|...+.....+... +....-..++++|++.
T Consensus       209 v~~~~~~-~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dpdG~  285 (433)
T 4hw6_A          209 IYLFTRA-SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWHPTGD  285 (433)
T ss_dssp             EEEECGG-GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEECTTSS
T ss_pred             EEEEECC-CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEEEeCCCC
Confidence            2222222 1111011111 223456788899 7777766667788888886534321222111 1112223689999998


Q ss_pred             EEE-EEeCCCcEEEEecCCCCCCCceeEeeeecc--C---------CCCcccEEEEEE---------cCCCCEEEEEeCC
Q 018675          177 VLF-SCSYDNTIKVWWAEDTDSDNWHCVQTISES--N---------NGHSSTIWALSF---------NAKGDKLVSCSDD  235 (352)
Q Consensus       177 ~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~--~---------~~h~~~i~~l~~---------~~~~~~l~s~~~d  235 (352)
                      .|+ +-...+.|..++..... ..+.....+...  .         .+.-.....+++         .+++.++++-...
T Consensus       286 ~LYvad~~~~~I~~~~~d~~~-~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n  364 (433)
T 4hw6_A          286 WAYIIYNGKHCIYRVDYNRET-GKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDS  364 (433)
T ss_dssp             EEEEEETTTTEEEEEEBCTTT-CCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTT
T ss_pred             EEEEEeCCCCEEEEEeCCCCC-cccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCC
Confidence            554 44456778887653211 101000011000  0         011234667888         7788888877778


Q ss_pred             CcEEEEcC
Q 018675          236 LTIKIWGA  243 (352)
Q Consensus       236 g~i~iwd~  243 (352)
                      ++|+.++.
T Consensus       365 ~~I~~~~~  372 (433)
T 4hw6_A          365 HTVRVLTP  372 (433)
T ss_dssp             TEEEEECT
T ss_pred             CEEEEECC
Confidence            88998874

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.13  E-value=1.1  Score=43.43  Aligned_cols=247  Identities=8%  Similarity=0.082  Sum_probs=131.3

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeec-----cccCCeeEEEECCCCcEEEEeeCCCcEEEEecCC
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-----GHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP  149 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~  149 (352)
                      ..|.++...++|.+.+ |..+ .+.+|+..++.........     -....|.++...++|.+.+ |+..+-|.+++...
T Consensus       211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCC
Confidence            4688998888888665 4444 6888886655433221111     1235688998888887655 44434577888654


Q ss_pred             CCeeEEEEE--------e----ecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeee---ccCCCCc
Q 018675          150 GNEFECVSV--------L----QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS---ESNNGHS  214 (352)
Q Consensus       150 ~~~~~~~~~--------~----~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~---~~~~~h~  214 (352)
                      ... .....        .    .-....|.++...+++. |..|+.++-|..++....   .+.......   .......
T Consensus       288 ~~~-~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~~l~~  362 (781)
T 3v9f_A          288 NQF-LLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPP---TFHTWSYSPTQMNESSLSN  362 (781)
T ss_dssp             C----------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCC---SCEEEC----CCCSSCCSS
T ss_pred             Cee-eeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCC---cceeeccCccccccCCCCC
Confidence            321 11111        0    01234577777777765 567777777888854322   121111000   0111123


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEE
Q 018675          215 STIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFF  294 (352)
Q Consensus       215 ~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~  294 (352)
                      ..|.++...++|.+.+ |+.++-|..++..........         .........|.++..++++.+-.|..++.+..+
T Consensus       363 ~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~---------~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~  432 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWI-GTDGGGINVFENGKRVAIYNK---------ENRELLSNSVLCSLKDSEGNLWFGTYLGNISYY  432 (781)
T ss_dssp             SCEEEEEECTTSCEEE-EEBSSCEEEEETTEEEEECC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEE
T ss_pred             cceEEEEEcCCCCEEE-EeCCCcEEEEECCCCeEEEcc---------CCCCCCCcceEEEEECCCCCEEEEeccCCEEEE
Confidence            5799999998888665 454555777875432111000         000123456788887777766666666666666


Q ss_pred             EccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          295 VESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      +......      ... .........|.++...+++. +.+ |... -|.+++..
T Consensus       433 ~~~~~~~------~~~-~~~~~~~~~v~~i~~d~~g~-lwi-gt~~-Gl~~~~~~  477 (781)
T 3v9f_A          433 NTRLKKF------QII-ELEKNELLDVRVFYEDKNKK-IWI-GTHA-GVFVIDLA  477 (781)
T ss_dssp             CSSSCEE------EEC-CSTTTCCCCEEEEEECTTSE-EEE-EETT-EEEEEESS
T ss_pred             cCCCCcE------EEe-ccCCCCCCeEEEEEECCCCC-EEE-EECC-ceEEEeCC
Confidence            4322111      000 00011345788998887775 443 3334 46667654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.09  E-value=0.72  Score=41.13  Aligned_cols=156  Identities=11%  Similarity=0.116  Sum_probs=87.3

Q ss_pred             ceEEEEEcc-CCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC-CC---c
Q 018675           23 RVWSLAWKP-TAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF-DA---T   97 (352)
Q Consensus        23 ~V~~i~~~p-~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~---~   97 (352)
                      .-.+++++| .+      ..|..+...+.|+.++......    .....  .......++|+++|+.|..+.. ++   .
T Consensus       138 ~P~~lavdp~~~------g~Lyv~d~~~~I~~id~~~~~v----~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~  205 (430)
T 3tc9_A          138 GAVWLSFDPKNH------NHLYLVGEQHPTRLIDFEKEYV----STVYS--GLSKVRTICWTHEADSMIITNDQNNNDRP  205 (430)
T ss_dssp             CCCEEEEETTEE------EEEEEEEBTEEEEEEETTTTEE----EEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSE
T ss_pred             CCCEEEECCCCC------CeEEEEeCCCcEEEEECCCCEE----EEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccc
Confidence            345777876 32      2344444447888888765431    11111  2245788999999995555543 22   1


Q ss_pred             EEEEEccCCceeeeEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC
Q 018675           98 TCIWEDVGGDYECVATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD  176 (352)
Q Consensus        98 i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  176 (352)
                      ..+|....+.......+.. ......++++| ++.++++-..++.|..++.... ....+.... ....-..++++|+++
T Consensus       206 ~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~-~~~~~~~~~-~~~~P~gia~~pdG~  282 (430)
T 3tc9_A          206 NNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ-ETTPLFTIQ-DSGWEFHIQFHPSGN  282 (430)
T ss_dssp             EEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT-EEEEEEECS-SSSCCEEEEECTTSS
T ss_pred             eEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-cEEEEEEcC-CCCcceeEEEcCCCC
Confidence            2233333332221122221 23467888999 7777777667788888887533 221122111 112356899999999


Q ss_pred             EE-EEEeCCCcEEEEecC
Q 018675          177 VL-FSCSYDNTIKVWWAE  193 (352)
Q Consensus       177 ~l-~s~~~d~~i~iw~~~  193 (352)
                      .| ++-...+.|..++..
T Consensus       283 ~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          283 YAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEEEETTTTEEEEEEEE
T ss_pred             EEEEEECCCCEEEEEeCC
Confidence            54 444556778887643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.03  E-value=0.73  Score=40.70  Aligned_cols=125  Identities=19%  Similarity=0.164  Sum_probs=74.4

Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCC--------cee-EeeeeccCCCCcccEEEEEEcCC---CCEEEEE
Q 018675          165 DVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN--------WHC-VQTISESNNGHSSTIWALSFNAK---GDKLVSC  232 (352)
Q Consensus       165 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~--------~~~-~~~~~~~~~~h~~~i~~l~~~~~---~~~l~s~  232 (352)
                      .+..+..+|+|.+|+..+ +..|.|-.+.......        .++ ...+.........+|..+.|||-   +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            577899999999888775 5578888766321111        111 11111111113578999999995   5679999


Q ss_pred             eCCCcEEEEcCCccccccCCCCccce-eeEEee-cccCcceEEEEecCCc---eEEecCCCCeEEEE
Q 018675          233 SDDLTIKIWGADITRMQSGDGYASWR-HLCTIS-GYHDRTIFSVHWSREG---IIASGAADDSVQFF  294 (352)
Q Consensus       233 ~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~~---~~~s~~~d~~v~~~  294 (352)
                      ..|+.||+||+....   ..+. ..+ ....+. ......+.+++|..++   ++++....|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~---~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQ---EKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTT---SCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCC---CCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            999999999986411   0000 000 000111 1123568889999877   45556678887754

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.67  E-value=1.2  Score=40.39  Aligned_cols=162  Identities=10%  Similarity=0.090  Sum_probs=88.1

Q ss_pred             eEEEEECCC--CCEEEEEeCCCcEEEEEccCCceeeeEeec-cccCCeeEEEE-------CCCCcEEEEeeCCC------
Q 018675           77 VRSCAWSPS--GKLLATASFDATTCIWEDVGGDYECVATLE-GHENEVKSVSW-------NASGTLLATCGRDK------  140 (352)
Q Consensus        77 v~~~~~s~~--~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~-~h~~~v~~v~~-------~~~~~~l~s~~~d~------  140 (352)
                      ...++|+|.  ++++++....+.|++.|..++....+.... ........++|       ++++..|+.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            457889983  445555444456777776665433322221 11235789999       99998666665543      


Q ss_pred             -cEEEEecCCCCee------EEEEEeecCccCeeEEEEcCC-CCEEEEEeCCCcEEEEecC-------CCCC-C---Cce
Q 018675          141 -SVWIWEVMPGNEF------ECVSVLQGHAQDVKMVQWHPT-MDVLFSCSYDNTIKVWWAE-------DTDS-D---NWH  201 (352)
Q Consensus       141 -~v~vwd~~~~~~~------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~-------~~~~-~---~~~  201 (352)
                       .|.+.+......+      ..+..+    .....++.+|+ +.++++-..++.|..+++.       .... .   ...
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             ceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence             2555543321111      122222    13356778995 4555566677788888765       2111 0   000


Q ss_pred             --eEeeeeccCCCCcccEEEEEEcCCCCE-EEEEeCCCcEEEEcCC
Q 018675          202 --CVQTISESNNGHSSTIWALSFNAKGDK-LVSCSDDLTIKIWGAD  244 (352)
Q Consensus       202 --~~~~~~~~~~~h~~~i~~l~~~~~~~~-l~s~~~dg~i~iwd~~  244 (352)
                        ....+...  +.......|+|+|+|++ +++=...++|+.++.+
T Consensus       297 ~g~~~~l~~~--~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          297 PNTFKQLFTI--ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TTTEEEEEEC--SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccceeEec--CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence              00111111  12234578999999994 5555567788886643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.42  E-value=1.4  Score=39.37  Aligned_cols=256  Identities=9%  Similarity=0.101  Sum_probs=124.5

Q ss_pred             eEEEEECCC---CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCC---Cc-EEEEecCC
Q 018675           77 VRSCAWSPS---GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD---KS-VWIWEVMP  149 (352)
Q Consensus        77 v~~~~~s~~---~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~-v~vwd~~~  149 (352)
                      ...++|+|+   +.+.+ +...+.|+.++..++...   .+.........++++++++++++....   .. +...+.. 
T Consensus       141 P~gvavd~~s~~g~Lyv-~D~~~~I~~id~~~g~v~---~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~-  215 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYW-VGQRDAFRHVDFVNQYVD---IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA-  215 (433)
T ss_dssp             CCEEEECTTTTTCEEEE-ECBTSCEEEEETTTTEEE---EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG-
T ss_pred             CceEEEccccCCCEEEE-EeCCCCEEEEECCCCEEE---EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC-
Confidence            467899984   45444 433378888887555432   232334568899999999955554321   12 2222221 


Q ss_pred             CCeeEEEEEeecCccCeeEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-
Q 018675          150 GNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-  227 (352)
Q Consensus       150 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-  227 (352)
                      +..... ..+. .......++++| ++.+.++-..++.|..++....   ..  ...+...  +....-..|+|+|+++ 
T Consensus       216 ~~~~~~-~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g---~~--~~~~~~~--~~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          216 SGFTER-LSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG---TL--TEEEVMM--DTKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             GTTCCE-EEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC---CE--EEEEEEC--SCCSSCEEEEECTTSSE
T ss_pred             CCeecc-cccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC---eE--EEEEecc--CCCCCcccEEEeCCCCE
Confidence            111100 1111 122345677888 6665555556677888864321   11  0111111  1112234699999998 


Q ss_pred             EEEEEeCCCcEEEEcCCcc--ccc------cCCCCccceeeEEeecccCcceEEEEe---------cCCc-eEEecCCCC
Q 018675          228 KLVSCSDDLTIKIWGADIT--RMQ------SGDGYASWRHLCTISGYHDRTIFSVHW---------SREG-IIASGAADD  289 (352)
Q Consensus       228 ~l~s~~~dg~i~iwd~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~-~~~s~~~d~  289 (352)
                      ++++-...++|+.++.+..  .+.      ...+...+.. .......-.....+++         ++++ ++++-..+.
T Consensus       287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~d-g~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~  365 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVD-GMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH  365 (433)
T ss_dssp             EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBC-EEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred             EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCC-CcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence            5555566788988875421  110      0000000000 0000001123455666         5554 444545556


Q ss_pred             eEEEEEccCCcccc--Cc-c---cceee--ecccccCcceeEEEec-CCCcceEEEecCCCeEEEEeec
Q 018675          290 SVQFFVESKDDLID--GP-S---YKMLL--KKEKAHDMDVNSVQWS-PGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       290 ~v~~~~~~~~~~~~--~~-~---~~~~~--~~~~~h~~~i~~~~~s-p~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      .|+.+.... .+..  +. .   ....-  ......-..-..|++. +++ .++++-...+.|+.++++
T Consensus       366 ~I~~~~~~G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          366 TVRVLTPEG-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK-CFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEECTTS-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT-EEEEEEGGGTEEEEEEEC
T ss_pred             EEEEECCCC-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC-EEEEEeCCCCEEEEEecC
Confidence            676664321 1100  00 0   00000  0000111236789999 555 578888788899988865

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.25  E-value=2.1  Score=40.55  Aligned_cols=146  Identities=11%  Similarity=0.064  Sum_probs=82.6

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeee----cceecceEEEEECCCCCEEEEEeC------CCcEEEEEccCCcee
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLE----EMHTRTVRSCAWSPSGKLLATASF------DATTCIWEDVGGDYE  109 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~----~~h~~~v~~~~~s~~~~~l~s~~~------d~~i~i~~~~~~~~~  109 (352)
                      ..++.++.|+.|..+|..+++..|+....-.    .....++  +   .++. ++.+..      ++.+..+|..+++..
T Consensus       118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~--v---~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~  191 (668)
T 1kv9_A          118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPR--V---VKGK-VIIGNGGAEYGVRGFVSAYDADTGKLA  191 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCE--E---ETTE-EEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCE--E---ECCE-EEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence            4677778899999999999988887543100    0001111  1   1344 443332      578999988777532


Q ss_pred             eeEee-ccc----------------------------cCCeeEEEECCCCcEEEEeeCCC-------------------c
Q 018675          110 CVATL-EGH----------------------------ENEVKSVSWNASGTLLATCGRDK-------------------S  141 (352)
Q Consensus       110 ~~~~~-~~h----------------------------~~~v~~v~~~~~~~~l~s~~~d~-------------------~  141 (352)
                      =.... .+.                            ......+++.+...+++.++.++                   +
T Consensus       192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~  271 (668)
T 1kv9_A          192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS  271 (668)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            11111 000                            01112467778777887777665                   3


Q ss_pred             EEEEecCCCCeeEEEEEeec--Cc-------cCeeEEEEcCCCC---EEEEEeCCCcEEEEecCC
Q 018675          142 VWIWEVMPGNEFECVSVLQG--HA-------QDVKMVQWHPTMD---VLFSCSYDNTIKVWWAED  194 (352)
Q Consensus       142 v~vwd~~~~~~~~~~~~~~~--h~-------~~v~~~~~~~~~~---~l~s~~~d~~i~iw~~~~  194 (352)
                      |..+|...++.   +..++.  |.       .+.....+..+++   .++.++.+|.+.++|...
T Consensus       272 v~AlD~~tG~~---~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t  333 (668)
T 1kv9_A          272 ILAIRPDTGKL---AWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN  333 (668)
T ss_dssp             EEEECTTTCCE---EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             EEEEcCCCCce---eeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC
Confidence            88889877653   222221  21       1222223333554   578888999999987654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.21  E-value=1.4  Score=38.11  Aligned_cols=104  Identities=11%  Similarity=0.083  Sum_probs=59.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeec---cccCCeeEEEECCC----CcEEEEeeCC-----CcEE
Q 018675           76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE---GHENEVKSVSWNAS----GTLLATCGRD-----KSVW  143 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~---~h~~~v~~v~~~~~----~~~l~s~~~d-----~~v~  143 (352)
                      .-..++|.|+|+++++ ..++.|.+++  .++...+..+.   .-......++|+|+    +.+.++-...     ..|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            3568899999996665 5668898887  34333333221   12346789999998    4444444432     5677


Q ss_pred             EEecCCCCe--eEE-EEEee---cCccCeeEEEEcCCCCEEEEEe
Q 018675          144 IWEVMPGNE--FEC-VSVLQ---GHAQDVKMVQWHPTMDVLFSCS  182 (352)
Q Consensus       144 vwd~~~~~~--~~~-~~~~~---~h~~~v~~~~~~~~~~~l~s~~  182 (352)
                      .++......  .+. +..+.   +.......+.|.|++.+.++.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            777653211  111 12122   1112235789999997666543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.16  E-value=0.96  Score=36.12  Aligned_cols=153  Identities=15%  Similarity=0.148  Sum_probs=77.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEccCCceee----eEee--ccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCC
Q 018675           76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC----VATL--EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP  149 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~----~~~~--~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~  149 (352)
                      .+..++|+|+|.+.++  .++.+.-.+..+.....    ...+  .+.+. -.++.|.|+|.+.++  .|+.|.-++-..
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            6779999999998777  55654333322211000    0111  01112 478899999988776  558776665422


Q ss_pred             CCeeEE----EEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC
Q 018675          150 GNEFEC----VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK  225 (352)
Q Consensus       150 ~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~  225 (352)
                      ......    ...-..--..+..|.+.|++.+.+..  |+.+.-..........|....+......-|  .-.-+.|.|+
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~--~yr~l~f~~~  192 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWD--TFKFLFFSSV  192 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGG--GEEEEEECTT
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcc--eEEEEEECCC
Confidence            211000    01111122467899999999876655  777533322211212221111111111112  2333668888


Q ss_pred             CCEEEEEeCCCcEEEE
Q 018675          226 GDKLVSCSDDLTIKIW  241 (352)
Q Consensus       226 ~~~l~s~~~dg~i~iw  241 (352)
                      +.+++..  +|  ++|
T Consensus       193 G~l~~v~--~g--~~Y  204 (236)
T 1tl2_A          193 GTLFGVQ--GG--KFY  204 (236)
T ss_dssp             SCEEEEE--TT--EEE
T ss_pred             CcEEEEe--CC--eEE
Confidence            8877665  66  445

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.09  E-value=1.8  Score=38.86  Aligned_cols=108  Identities=7%  Similarity=0.086  Sum_probs=60.2

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeecc------ccCCeeEEEECCC----CcEEEEeeC-------
Q 018675           76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG------HENEVKSVSWNAS----GTLLATCGR-------  138 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~------h~~~v~~v~~~~~----~~~l~s~~~-------  138 (352)
                      ....++|.|+|+++++-...+.|.+++..++....+..+..      ..+....++|+|+    +.+.++-+.       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            34689999999988765444468777654444443333321      2456779999994    444444332       


Q ss_pred             -----CCcEEEEecCCCC-e---eEEEE-Eee-cCccCeeEEEEcCCCCEEEEEeC
Q 018675          139 -----DKSVWIWEVMPGN-E---FECVS-VLQ-GHAQDVKMVQWHPTMDVLFSCSY  183 (352)
Q Consensus       139 -----d~~v~vwd~~~~~-~---~~~~~-~~~-~h~~~v~~~~~~~~~~~l~s~~~  183 (352)
                           ...|.-++..... .   .+.+. .+. ........+.|.|++.+.++.+.
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                 1244445443221 1   11111 121 11224678999999987776553

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=94.99  E-value=1.6  Score=37.64  Aligned_cols=195  Identities=9%  Similarity=-0.055  Sum_probs=106.2

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC-CEEEEEeCCCcEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG-KLLATASFDATTCIW  101 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~i~  101 (352)
                      ...+++|.|.+     +.++.+-...+.|..++......    ..... ........+++.+.+ .+.++-...+.|.+.
T Consensus        74 ~~~~l~~d~~~-----~~ly~~D~~~~~I~r~~~~g~~~----~~~~~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~  143 (349)
T 3v64_C           74 NAIALDFHHRR-----ELVFWSDVTLDRILRANLNGSNV----EEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVA  143 (349)
T ss_dssp             CEEEEEEETTT-----TEEEEEETTTTEEEEEETTSCSC----EEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccc-----cEEEEEeccCCceEEEecCCCCc----eEEEe-CCCCCccEEEEecCCCeEEEEcCCCCeEEEE
Confidence            45678888753     34555555667788787765421    11111 111234678888754 555666667788888


Q ss_pred             EccCCceeeeEeeccccCCeeEEEECCCCc-EEEEeeCC-CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE
Q 018675          102 EDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRD-KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF  179 (352)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d-~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  179 (352)
                      +..+....  ..+...-...+.+++.|.+. ++++-... +.|...++.... ...  ...........++++|++..|.
T Consensus       144 ~~dG~~~~--~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~--~~~~~~~~PnGla~d~~~~~lY  218 (349)
T 3v64_C          144 NLDGAHRK--VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRI--IADTHLFWPNGLTIDYAGRRMY  218 (349)
T ss_dssp             ETTSCSCE--EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEE--SCCSSCSCEEEEEEETTTTEEE
T ss_pred             cCCCCceE--EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEE--EEECCCCCcceEEEeCCCCEEE
Confidence            76543221  12222335678999998554 44444444 667777764321 111  1111223457899998766555


Q ss_pred             EE-eCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEc
Q 018675          180 SC-SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG  242 (352)
Q Consensus       180 s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd  242 (352)
                      .+ +..+.|..++......      ..+...   .......|++. .+..+++-...+.|..++
T Consensus       219 ~aD~~~~~I~~~~~dG~~~------~~~~~~---~~~~P~giav~-~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          219 WVDAKHHVIERANLDGSHR------KAVISQ---GLPHPFAITVF-EDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             EEETTTTEEEEEETTSCSC------EEEECS---SCSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCEEEEEeCCCCce------EEEEeC---CCCCceEEEEE-CCEEEEecCCCCeEEEEE
Confidence            44 4566788887643211      111111   12345567773 445555655666776665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=94.97  E-value=1.6  Score=37.61  Aligned_cols=197  Identities=12%  Similarity=0.067  Sum_probs=108.2

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCC-EEEEEeCCCcE
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK-LLATASFDATT   98 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i   98 (352)
                      +.+..+|.+..+.       ++|+- +....|+..++.....    .....  .......++|++... +..+-...+.|
T Consensus        32 ~~d~~~C~~~~~~-------~~ll~-~~~~~I~~i~~~g~~~----~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I   97 (349)
T 3v64_C           32 RPDRRSCKALGPE-------PVLLF-ANRIDIRQVLPHRSEY----TLLLN--NLENAIALDFHHRRELVFWSDVTLDRI   97 (349)
T ss_dssp             CTTSSCEEESSSC-------CEEEE-ECBSCEEEECTTSCCE----EEEEC--SCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCCcccccccC-------ceeEe-ecccceEEEeCCCCee----EEeec--CCCceEEEEEeccccEEEEEeccCCce
Confidence            3455566654442       23332 2445677777654321    11111  123468899997555 44555566788


Q ss_pred             EEEEccCCceeeeEeeccccCCeeEEEECCC-CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCE
Q 018675           99 CIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV  177 (352)
Q Consensus        99 ~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  177 (352)
                      ..++..+.....+  +.........+++.+. +.+.++-...+.|.+.++.... ...  ...........+++.|.+..
T Consensus        98 ~r~~~~g~~~~~~--~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~--l~~~~l~~P~~iavdp~~g~  172 (349)
T 3v64_C           98 LRANLNGSNVEEV--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKV--LLWQSLEKPRAIALHPMEGT  172 (349)
T ss_dssp             EEEETTSCSCEEE--ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE--EECTTCSCEEEEEEETTTTE
T ss_pred             EEEecCCCCceEE--EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEE--EEeCCCCCcceEEEecCcCe
Confidence            8887665432222  2222234567888874 4555666667788888875322 111  12223345678899986555


Q ss_pred             EE-EEeCC-CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE-EEEeCCCcEEEEcCC
Q 018675          178 LF-SCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGAD  244 (352)
Q Consensus       178 l~-s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l-~s~~~dg~i~iwd~~  244 (352)
                      |+ +-... +.|...++.....      ..+..   ......+.|+++|++..| ++-...++|..++++
T Consensus       173 ly~td~~~~~~I~r~~~dG~~~------~~~~~---~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          173 IYWTDWGNTPRIEASSMDGSGR------RIIAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             EEEEECSSSCEEEEEETTSCSC------EESCC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEeccCCCCEEEEEeCCCCCc------EEEEE---CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            54 44444 6677766543211      11111   112456789999865544 455556788888765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.80  E-value=2  Score=37.85  Aligned_cols=186  Identities=8%  Similarity=-0.012  Sum_probs=103.3

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCE-EEEEeCCCcEEEEEccCCc--eeeeEeecc
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKL-LATASFDATTCIWEDVGGD--YECVATLEG  116 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~i~i~~~~~~~--~~~~~~~~~  116 (352)
                      ++|+-+ ....|+..++......    ..+  .....+..++|++.+.. ..+-...+.|..++..+..  ......+..
T Consensus        84 ~~ll~~-~~~~I~~i~l~~~~~~----~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~  156 (400)
T 3p5b_L           84 AYLFFT-NRHEVRKMTLDRSEYT----SLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR  156 (400)
T ss_dssp             CEEEEE-ETTEEEEECTTSCSCE----EEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS
T ss_pred             ceeEEe-ccceeEEEccCCccee----Eec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC
Confidence            344443 4578888887654321    111  12346789999986554 4554556778777654311  011122222


Q ss_pred             ccCCeeEEEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEe-C-CCcEEEEecC
Q 018675          117 HENEVKSVSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-Y-DNTIKVWWAE  193 (352)
Q Consensus       117 h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~-d~~i~iw~~~  193 (352)
                      .......+++.+ .+++.++-...+.|.+.++.... ..  ..+.........+++.|.+..|+.+. . .+.|...++.
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~--~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RK--TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EE--EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eE--EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence            334577888887 45556666667888888875332 11  12222334467889998666555444 2 3567777654


Q ss_pred             CCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEcCC
Q 018675          194 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGAD  244 (352)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~-~~dg~i~iwd~~  244 (352)
                      ....      ..+..   ......+.|++++++..|..+ ...+.|..+|++
T Consensus       234 G~~~------~~~~~---~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d  276 (400)
T 3p5b_L          234 GVDI------YSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  276 (400)
T ss_dssp             SCSC------EEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCcc------EEEEE---CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence            3221      11111   112457889999876655544 456788888765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=94.74  E-value=2  Score=37.61  Aligned_cols=196  Identities=9%  Similarity=-0.059  Sum_probs=105.3

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCC-CEEEEEeCCCcEEE
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG-KLLATASFDATTCI  100 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~i  100 (352)
                      ....+++|.+..     +.++.+-...+.|..++......    ...+. ........+++++.+ .+.++-...+.|.+
T Consensus       116 ~~~~gl~~d~~~-----~~ly~~D~~~~~I~r~~~~g~~~----~~~~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~  185 (386)
T 3v65_B          116 ENAIALDFHHRR-----ELVFWSDVTLDRILRANLNGSNV----EEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEV  185 (386)
T ss_dssp             SCEEEEEEETTT-----TEEEEEETTTTEEEEEETTSCCE----EEEEC-SSCSCCCCEEEETTTTEEEEEETTTTEEEE
T ss_pred             CccEEEEEecCC-----CeEEEEeCCCCcEEEEecCCCCc----EEEEe-CCCCCccEEEEEeCCCeEEEEcCCCCeEEE
Confidence            345678888753     34555555667888887765421    11111 111234667888754 45555556677777


Q ss_pred             EEccCCceeeeEeeccccCCeeEEEECCCCcEEEEe-eCC-CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEE
Q 018675          101 WEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC-GRD-KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVL  178 (352)
Q Consensus       101 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d-~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  178 (352)
                      .+..+....  ..+...-.....+++.|.+..|+.+ ... +.|...++.... ...+  ..........++++|++..|
T Consensus       186 ~~~dg~~~~--~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~--~~~~~~~PnGlavd~~~~~l  260 (386)
T 3v65_B          186 ANLDGAHRK--VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRII--ADTHLFWPNGLTIDYAGRRM  260 (386)
T ss_dssp             CBTTSCSCE--EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEE--ECSSCSCEEEEEEEGGGTEE
T ss_pred             EeCCCCceE--EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEE--EECCCCCeeeEEEeCCCCEE
Confidence            765443221  1222233567889999865554444 334 567777754322 1111  11222345789999866655


Q ss_pred             EE-EeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEc
Q 018675          179 FS-CSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG  242 (352)
Q Consensus       179 ~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd  242 (352)
                      +. -+..+.|..++......      ..+...   .......|++ ..+..+++-...+.|..++
T Consensus       261 Y~aD~~~~~I~~~d~dG~~~------~~~~~~---~~~~P~giav-~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          261 YWVDAKHHVIERANLDGSHR------KAVISQ---GLPHPFAITV-FEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEEETTTTEEEEECTTSCSC------EEEECS---SCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCEEEEEeCCCCee------EEEEEC---CCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence            54 44566788886543211      111111   1234556777 3445556666667777775

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.56  E-value=2.1  Score=37.02  Aligned_cols=133  Identities=13%  Similarity=0.115  Sum_probs=71.3

Q ss_pred             CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC---C------------CcEEEEEccCCceeeeE
Q 018675           48 DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF---D------------ATTCIWEDVGGDYECVA  112 (352)
Q Consensus        48 D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d------------~~i~i~~~~~~~~~~~~  112 (352)
                      +.++.+|+.+...........+....-...+.+.+.++|++.++...   |            ..-.+|....++..   
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~---  214 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR---  214 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCE---
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEE---
Confidence            56777877655432222222221111245789999999998887541   1            22344443333222   


Q ss_pred             eeccccCCeeEEEECCCCcEEEEe-eCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC-CCCEEEEEeCC
Q 018675          113 TLEGHENEVKSVSWNASGTLLATC-GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP-TMDVLFSCSYD  184 (352)
Q Consensus       113 ~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d  184 (352)
                      .+...-...+.++|+|+++.|+.+ +..+.|..|++...........+. .....-.++..+ ++.+.+++..+
T Consensus       215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred             EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCC
Confidence            121223456899999999876655 456889999986433333223331 122234455666 36655544433

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=94.53  E-value=3  Score=38.71  Aligned_cols=104  Identities=16%  Similarity=0.116  Sum_probs=57.8

Q ss_pred             CCeEEEEecCCCceeeeeeeeeec--ce-----------------------------ec--ceEEEEECCCCCEEEEEeC
Q 018675           48 DKTVRIWEQSASSRFWNCKAVLEE--MH-----------------------------TR--TVRSCAWSPSGKLLATASF   94 (352)
Q Consensus        48 D~~v~~w~~~~~~~~~~~~~~~~~--~h-----------------------------~~--~v~~~~~s~~~~~l~s~~~   94 (352)
                      |+.|..+|..+++..|+....-..  .+                             ..  ....+++.++...+..+..
T Consensus       175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g  254 (571)
T 2ad6_A          175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECC
Confidence            799999999999888875421100  00                             00  0012455665555555543


Q ss_pred             C----------------CcEEEEEccCCceeeeEeecccc--------CCeeEEEECCCCc---EEEEeeCCCcEEEEec
Q 018675           95 D----------------ATTCIWEDVGGDYECVATLEGHE--------NEVKSVSWNASGT---LLATCGRDKSVWIWEV  147 (352)
Q Consensus        95 d----------------~~i~i~~~~~~~~~~~~~~~~h~--------~~v~~v~~~~~~~---~l~s~~~d~~v~vwd~  147 (352)
                      +                +.+..+|..+++..=......|.        .++ -+....+|+   .++.++.++.+.+.|.
T Consensus       255 ~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~  333 (571)
T 2ad6_A          255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNR  333 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred             CCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEEC
Confidence            2                25778888777542112222221        111 122224663   5677888999999998


Q ss_pred             CCCCe
Q 018675          148 MPGNE  152 (352)
Q Consensus       148 ~~~~~  152 (352)
                      ..++.
T Consensus       334 ~tG~~  338 (571)
T 2ad6_A          334 ENGNL  338 (571)
T ss_dssp             TTCCE
T ss_pred             CCCCE
Confidence            76653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.28  E-value=0.6  Score=44.61  Aligned_cols=180  Identities=8%  Similarity=-0.000  Sum_probs=90.2

Q ss_pred             CCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE-eCCCcEEEEEccCCc--eeeeEeeccccCCeeE
Q 018675           47 GDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA-SFDATTCIWEDVGGD--YECVATLEGHENEVKS  123 (352)
Q Consensus        47 ~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~d~~i~i~~~~~~~--~~~~~~~~~h~~~v~~  123 (352)
                      ..+.|+..++.+...    ...+.  ....+..++|++.+..|... ...+.|..++..+..  ......+.........
T Consensus       384 ~~~~I~~id~~~~~~----~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g  457 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEY----TSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  457 (699)
T ss_dssp             CTTC-CEECTTSCCE----ECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred             CccceEEEeCCCCcc----eeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence            345677666654321    11111  12345678898866555443 445778777765310  0111111111123456


Q ss_pred             EEECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-C-CcEEEEecCCCCCCCc
Q 018675          124 VSWNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-D-NTIKVWWAEDTDSDNW  200 (352)
Q Consensus       124 v~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d-~~i~iw~~~~~~~~~~  200 (352)
                      +++.+ .+.++++-...+.|.+.++.... ..  ..+.........+++.|.+..|+.+.. . +.|...++.....   
T Consensus       458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~--~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~---  531 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGTVSVADTKGVK-RK--TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---  531 (699)
T ss_dssp             EECCCSSSBCEECCTTTSCEEEEBSSSCC-EE--EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---
T ss_pred             EEEEeeCCcEEEEeccCCeEEEEecCCCc-eE--EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---
Confidence            77775 44555555667889888875332 11  112212234467788886554443332 2 5666554432211   


Q ss_pred             eeEeeeeccCCCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEcCC
Q 018675          201 HCVQTISESNNGHSSTIWALSFNAKG-DKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       201 ~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~s~~~dg~i~iwd~~  244 (352)
                         ..+..   ......+.|+++|++ .++++-+..++|..++++
T Consensus       532 ---~~l~~---~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          532 ---YSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             ---CEESC---SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred             ---eEEEe---CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence               11110   111345578999874 455565667789988875

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.96  E-value=2.1  Score=36.97  Aligned_cols=105  Identities=9%  Similarity=0.053  Sum_probs=55.4

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCcEEEEEccCCcee-eeEee----ccccCCeeEEEECCC----CcEEEEeeC-------
Q 018675           76 TVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYE-CVATL----EGHENEVKSVSWNAS----GTLLATCGR-------  138 (352)
Q Consensus        76 ~v~~~~~s~~~~-~l~s~~~d~~i~i~~~~~~~~~-~~~~~----~~h~~~v~~v~~~~~----~~~l~s~~~-------  138 (352)
                      ....++|.|+|+ ++++ ...+.|.+++.. +... .+..+    .........++++|+    +.+.++-..       
T Consensus        19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            457889999999 6654 567888888743 2211 11111    112345688999995    444444332       


Q ss_pred             CCcEEEEecCCCC-e---eEEE-EEee---cCccCeeEEEEcCCCCEEEEEe
Q 018675          139 DKSVWIWEVMPGN-E---FECV-SVLQ---GHAQDVKMVQWHPTMDVLFSCS  182 (352)
Q Consensus       139 d~~v~vwd~~~~~-~---~~~~-~~~~---~h~~~v~~~~~~~~~~~l~s~~  182 (352)
                      ...|..+++.... .   .+.+ ..+.   ........+.|.|++.+.++.+
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence            2345555553221 1   1111 1111   0111235689999996555543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=93.47  E-value=3.6  Score=35.90  Aligned_cols=217  Identities=9%  Similarity=0.009  Sum_probs=115.8

Q ss_pred             CCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCC-EEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEE
Q 018675           47 GDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS  125 (352)
Q Consensus        47 ~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~  125 (352)
                      ....|+..++.....    .....  .......++|++.+. ++.+-...+.|..++..+.....+  +.........++
T Consensus        94 ~~~~I~~i~~~~~~~----~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--~~~~~~~p~gla  165 (386)
T 3v65_B           94 NRIDIRQVLPHRSEY----TLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV--VSTGLESPGGLA  165 (386)
T ss_dssp             CBSCEEEECTTSCCC----EEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE--ECSSCSCCCCEE
T ss_pred             cCccceeeccCCCcE----EEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE--EeCCCCCccEEE
Confidence            456777777765321    11111  123578899997554 555555667888887665432222  222223456788


Q ss_pred             ECCC-CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEe-CC-CcEEEEecCCCCCCCcee
Q 018675          126 WNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YD-NTIKVWWAEDTDSDNWHC  202 (352)
Q Consensus       126 ~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d-~~i~iw~~~~~~~~~~~~  202 (352)
                      +.+. +.++++-...+.|.+.++.... ...  ...........+++.|.+..|+.+. .. +.|..++......     
T Consensus       166 vd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~--l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----  237 (386)
T 3v65_B          166 VDWVHDKLYWTDSGTSRIEVANLDGAH-RKV--LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-----  237 (386)
T ss_dssp             EETTTTEEEEEETTTTEEEECBTTSCS-CEE--EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----
T ss_pred             EEeCCCeEEEEcCCCCeEEEEeCCCCc-eEE--eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-----
Confidence            8874 4455555566778887764322 111  1222234567888998766555443 34 5676665543211     


Q ss_pred             EeeeeccCCCCcccEEEEEEcCCCCE-EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCce
Q 018675          203 VQTISESNNGHSSTIWALSFNAKGDK-LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI  281 (352)
Q Consensus       203 ~~~~~~~~~~h~~~i~~l~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  281 (352)
                       ..+..   ......+.|+++|++.. +++-...+.|..++++....            ..+..........++...+..
T Consensus       238 -~~~~~---~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~------------~~~~~~~~~~P~giav~~~~l  301 (386)
T 3v65_B          238 -RIIAD---THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR------------KAVISQGLPHPFAITVFEDSL  301 (386)
T ss_dssp             -EEEEC---SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC------------EEEECSSCSSEEEEEEETTEE
T ss_pred             -EEEEE---CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee------------EEEEECCCCCceEEEEECCEE
Confidence             11111   11235678999986554 44555667888887652111            001111122345555544555


Q ss_pred             EEecCCCCeEEEEE
Q 018675          282 IASGAADDSVQFFV  295 (352)
Q Consensus       282 ~~s~~~d~~v~~~~  295 (352)
                      +.+-...+.|..++
T Consensus       302 y~td~~~~~V~~~~  315 (386)
T 3v65_B          302 YWTDWHTKSINSAN  315 (386)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEeeCCCCeEEEEE
Confidence            55555666666654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=93.41  E-value=3.4  Score=35.48  Aligned_cols=195  Identities=14%  Similarity=0.166  Sum_probs=107.6

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC----CCCE--EE--EEeC--CCcEEEEEcc--CC
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP----SGKL--LA--TASF--DATTCIWEDV--GG  106 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~----~~~~--l~--s~~~--d~~i~i~~~~--~~  106 (352)
                      ..++++....+-+.+||+ .++.+..    +   ..+.++.+.+-|    .|+.  ++  +.-.  ++++++|+..  ++
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~----~---~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~  111 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHS----Y---NTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEE----E---CCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEE----c---cCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence            345666677889999999 4433211    1   113444444444    2332  33  3333  5789999653  33


Q ss_pred             ceeeeEee--c-ccc-CCeeEEEE--CCC-Cc-EEEEeeCCCcEEEEecCCC----CeeEEEEEeecCccCeeEEEEcCC
Q 018675          107 DYECVATL--E-GHE-NEVKSVSW--NAS-GT-LLATCGRDKSVWIWEVMPG----NEFECVSVLQGHAQDVKMVQWHPT  174 (352)
Q Consensus       107 ~~~~~~~~--~-~h~-~~v~~v~~--~~~-~~-~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~h~~~v~~~~~~~~  174 (352)
                      +...+...  . +.. ..+..++.  +|. +. +++....++.+..|++...    -..+.+..+.-. .++-.+...+.
T Consensus       112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~  190 (355)
T 3amr_A          112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDE  190 (355)
T ss_dssp             CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETT
T ss_pred             ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCC
Confidence            32222110  0 011 45667777  664 43 5777888899999998432    123444555432 45667778888


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEE--cCCCC-EEEEEe-CCCcEEEEcCC
Q 018675          175 MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF--NAKGD-KLVSCS-DDLTIKIWGAD  244 (352)
Q Consensus       175 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~--~~~~~-~l~s~~-~dg~i~iwd~~  244 (352)
                      ...|+.+-++..|..++...........+..+.  .......+-.|++  .++++ ||++++ .++++.+||.+
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~--~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD--GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS--SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEec--CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            788999999866544443322211122222221  1112235777777  55555 555554 67799999864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=93.35  E-value=0.97  Score=43.14  Aligned_cols=202  Identities=8%  Similarity=-0.018  Sum_probs=98.3

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC-CCEEEEEeCCCcEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS-GKLLATASFDATTCIW  101 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~i~  101 (352)
                      .+.+|+|.+..     +.++.+-...+.|+.+++............+.. .-.....+++.+. ++++++-...+.|.+.
T Consensus       407 ~p~gla~d~~~-----~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-~~~~P~glavD~~~g~LY~tD~~~~~I~v~  480 (699)
T 1n7d_A          407 NVVALDTEVAS-----NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  480 (699)
T ss_dssp             TCCCCEEETTT-----TEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-CC--CCCEECCCSSSBCEECCTTTSCEEEE
T ss_pred             ceEEEcccccc-----CeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-CCCCcceEEEEeeCCcEEEEeccCCeEEEE
Confidence            34566776643     234444445577777776541000000011100 1123456778754 4555555566788888


Q ss_pred             EccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-C-CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC-EE
Q 018675          102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-D-KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD-VL  178 (352)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d-~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l  178 (352)
                      +..+....  ..+.........+++.|.+..|+.+.. . +.|.+.++.... ...+  ..........|+++|++. +.
T Consensus       481 d~dg~~~~--~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l--~~~~l~~PnGlavd~~~~~LY  555 (699)
T 1n7d_A          481 DTKGVKRK--TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL--VTENIQWPNGITLDLLSGRLY  555 (699)
T ss_dssp             BSSSCCEE--EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEE--SCSSCSSCCCEEECTTTCCEE
T ss_pred             ecCCCceE--EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEE--EeCCCCCccEEEEeccCCEEE
Confidence            76543221  112222245678888886554443332 2 567666653221 1111  111123346789998755 44


Q ss_pred             EEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          179 FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       179 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      ++-+..+.|..+++.....   .   .+... .+.......|++..+ .++++-...+.|..++.
T Consensus       556 ~aD~~~~~I~~~d~dG~~~---~---~~~~~-~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          556 WVDSKLHSISSIDVNGGNR---K---TILED-EKRLAHPFSLAVFED-KVFWTDIINEAIFSANR  612 (699)
T ss_dssp             EEETTTTEEEEECSSSSCC---E---EECCC-SSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred             EEecCCCeEEEEccCCCce---E---EEEec-CCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence            5555667888887643211   1   11110 011112234555544 44555566678888864

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.11  E-value=3.8  Score=35.21  Aligned_cols=106  Identities=14%  Similarity=0.209  Sum_probs=58.3

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeee--eecceecceEEEEECCC----CCEEEEEeC
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAV--LEEMHTRTVRSCAWSPS----GKLLATASF   94 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~--~~~~h~~~v~~~~~s~~----~~~l~s~~~   94 (352)
                      ...-++|+|.|+      +.++++ ..++.|.+++  .+..  .....  +..........++|+|+    +.+.++-..
T Consensus        30 l~~P~~ia~~pd------G~l~V~-e~~g~I~~i~--~g~~--~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~   98 (352)
T 2ism_A           30 LEVPWALAFLPD------GGMLIA-ERPGRIRLFR--EGRL--STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTV   98 (352)
T ss_dssp             CSCEEEEEECTT------SCEEEE-ETTTEEEEEE--TTEE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CCCceEEEEcCC------CeEEEE-eCCCeEEEEE--CCCc--cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence            344568999987      345554 5679999888  2221  11110  10111245788999998    455554443


Q ss_pred             C-----CcEEEEEccCCce---eee-Eeec---cccCCeeEEEECCCCcEEEEee
Q 018675           95 D-----ATTCIWEDVGGDY---ECV-ATLE---GHENEVKSVSWNASGTLLATCG  137 (352)
Q Consensus        95 d-----~~i~i~~~~~~~~---~~~-~~~~---~h~~~v~~v~~~~~~~~l~s~~  137 (352)
                      .     +.|..++...+..   +.+ ..+.   +.......+.|.|+|.+.++.+
T Consensus        99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            2     5566676543311   111 1122   1112346899999998777654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.93  E-value=4.2  Score=35.11  Aligned_cols=156  Identities=8%  Similarity=0.038  Sum_probs=84.3

Q ss_pred             EEEEECCCCCEEEEE------------eCCCcEEEEEccC--CceeeeEeecc-----ccCCeeEEEECC--CCc--EEE
Q 018675           78 RSCAWSPSGKLLATA------------SFDATTCIWEDVG--GDYECVATLEG-----HENEVKSVSWNA--SGT--LLA  134 (352)
Q Consensus        78 ~~~~~s~~~~~l~s~------------~~d~~i~i~~~~~--~~~~~~~~~~~-----h~~~v~~v~~~~--~~~--~l~  134 (352)
                      -.+...|+|..++++            ..+|.|.++|..+  .+...+ .+.+     ..-....+.+.+  ++.  +++
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            445567777665554            2688899998753  222222 2222     223566777655  343  444


Q ss_pred             EeeC--CCcEEEEecCCCC-eeEEEEEeecCc-cCeeEEEEcCCCCEEEEEeC---C------------CcEEEEecCCC
Q 018675          135 TCGR--DKSVWIWEVMPGN-EFECVSVLQGHA-QDVKMVQWHPTMDVLFSCSY---D------------NTIKVWWAEDT  195 (352)
Q Consensus       135 s~~~--d~~v~vwd~~~~~-~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~---d------------~~i~iw~~~~~  195 (352)
                      +-..  +.++-+|++.... ....+..+.+.. ...+.+...+++.+.++...   |            ..=.+|.... 
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-  210 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  210 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence            4333  5678888876543 333344444322 34678888888876666431   1            1122332211 


Q ss_pred             CCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEcCC
Q 018675          196 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC-SDDLTIKIWGAD  244 (352)
Q Consensus       196 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~-~~dg~i~iwd~~  244 (352)
                        .....   +.    ..-...+.++|+||++.|..+ +..++|..|+++
T Consensus       211 --~~~~~---~~----~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          211 --NDVRV---VA----EGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             --TCCEE---EE----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             --CeEEE---ee----cCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence              11111   11    012346789999999766554 457889988864

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.79  E-value=4.3  Score=34.90  Aligned_cols=107  Identities=13%  Similarity=0.099  Sum_probs=62.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEee----ccccCCeeEEEECCC----CcEEEEe--eCCCcEEEE
Q 018675           76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL----EGHENEVKSVSWNAS----GTLLATC--GRDKSVWIW  145 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~----~~h~~~v~~v~~~~~----~~~l~s~--~~d~~v~vw  145 (352)
                      ....++|.|+|+++++--..|.|.+++..++....+..+    .........++++|+    +.+.++-  ..++.|.-|
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            457899999999887765588898887554443333322    122456789999995    4444432  234455555


Q ss_pred             ecCCC-----C--eeEEE-EEee-cCccCeeEEEEcCCCCEEEEEe
Q 018675          146 EVMPG-----N--EFECV-SVLQ-GHAQDVKMVQWHPTMDVLFSCS  182 (352)
Q Consensus       146 d~~~~-----~--~~~~~-~~~~-~h~~~v~~~~~~~~~~~l~s~~  182 (352)
                      .+...     .  ..+.+ ..+. ........+.|.|++.+.++.+
T Consensus       113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            54331     1  11222 2221 1112345789999998777654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=92.72  E-value=4.8  Score=35.31  Aligned_cols=204  Identities=9%  Similarity=-0.021  Sum_probs=108.5

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECC-CCCEEEEEeCCCcE
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP-SGKLLATASFDATT   98 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i   98 (352)
                      ....+.+++|.+.+     +.++.+-...+.|..+++............+ ...-.....+++.+ .+++.++-...+.|
T Consensus       110 ~~~~~~~l~~d~~~-----~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavD~~~~~lY~~d~~~~~I  183 (400)
T 3p5b_L          110 NLRNVVALDTEVAS-----NRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSNIYWTDSVLGTV  183 (400)
T ss_dssp             SCSCEEEEEEETTT-----TEEEEEETTTTEEEEEEC------CCCEEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCcceEEeeeecc-----CceEEEecCCCeEEEEEcccCCCCCcceEEE-eCCCCCcccEEEEecCCceEEEECCCCeE
Confidence            34567788888754     2455555566778777765421000001111 11123567788887 45555666667788


Q ss_pred             EEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEee-C-CCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC
Q 018675           99 CIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG-R-DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD  176 (352)
Q Consensus        99 ~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~-d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  176 (352)
                      .+.+..+.....  .+...-.....|++.|.+..|+-+. . .+.|...++..... ..  .....-.....++++|++.
T Consensus       184 ~~~~~~g~~~~~--l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-~~--~~~~~l~~P~glavd~~~~  258 (400)
T 3p5b_L          184 SVADTKGVKRKT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS--LVTENIQWPNGITLDLLSG  258 (400)
T ss_dssp             EEECTTTCSEEE--EEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-EE--EECSSCSCEEEEEEETTTT
T ss_pred             EEEeCCCCceEE--EEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-EE--EEECCCCceEEEEEEeCCC
Confidence            887765443221  2222334578999998655544443 2 36777777643221 11  1122224567899998776


Q ss_pred             EEEEE-eCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEc
Q 018675          177 VLFSC-SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG  242 (352)
Q Consensus       177 ~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd  242 (352)
                      .|+.+ +..+.|..++......   .   .+... .+......+|++. .+..+.+-...+.|..++
T Consensus       259 ~lY~aD~~~~~I~~~d~dG~~~---~---~~~~~-~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          259 RLYWVDSKLHSISSIDVNGGNR---K---TILED-EKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             EEEEEETTTTEEEEEETTSCCC---E---EEEEC-SSTTSSEEEEEEE-TTEEEEEESSSCSEEEEE
T ss_pred             EEEEEECCCCEEEEEeCCCCcc---E---EEEeC-CCCCCCCEEEEEe-CCEEEEecCCCCeEEEEE
Confidence            66555 4566788887654221   1   11111 1112334566763 334555555667777776

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.60  E-value=3.9  Score=33.94  Aligned_cols=146  Identities=11%  Similarity=0.211  Sum_probs=73.3

Q ss_pred             CCCEEEEEeCC-----CcEEEEEccCCc---eeeeEeeccccCCeeEEEECCCCcEEEEeeCC-----CcEEEEecCCCC
Q 018675           85 SGKLLATASFD-----ATTCIWEDVGGD---YECVATLEGHENEVKSVSWNASGTLLATCGRD-----KSVWIWEVMPGN  151 (352)
Q Consensus        85 ~~~~l~s~~~d-----~~i~i~~~~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~v~vwd~~~~~  151 (352)
                      ++++++.|+.+     ..+.+||..+..   +..+..+......-.++..  ++.+++.|+.+     ..+.++|.... 
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~-  138 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID-  138 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT-
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC-
Confidence            57788888765     357788877766   5544333222222222222  56677777654     35777886543 


Q ss_pred             eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCC-----CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC
Q 018675          152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG  226 (352)
Q Consensus       152 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~  226 (352)
                      ....+..+.........+.  .++.+++.|+.+     ..+.+||...   ..|..+..+......|.    ++.+  ++
T Consensus       139 ~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~---~~W~~~~~~p~~r~~~~----~~~~--~~  207 (301)
T 2vpj_A          139 QWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHT---GHWTNVTPMATKRSGAG----VALL--ND  207 (301)
T ss_dssp             EEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTT---TEEEEECCCSSCCBSCE----EEEE--TT
T ss_pred             eEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCC---CcEEeCCCCCcccccce----EEEE--CC
Confidence            3333332221111111222  255666676654     3577776533   34554433322222221    2222  45


Q ss_pred             CEEEEEeCC-----CcEEEEcCC
Q 018675          227 DKLVSCSDD-----LTIKIWGAD  244 (352)
Q Consensus       227 ~~l~s~~~d-----g~i~iwd~~  244 (352)
                      ..++.|+.+     ..+.+||..
T Consensus       208 ~i~v~GG~~~~~~~~~v~~yd~~  230 (301)
T 2vpj_A          208 HIYVVGGFDGTAHLSSVEAYNIR  230 (301)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETT
T ss_pred             EEEEEeCCCCCcccceEEEEeCC
Confidence            667777764     357777764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.53  E-value=4  Score=33.91  Aligned_cols=146  Identities=16%  Similarity=0.224  Sum_probs=70.7

Q ss_pred             CCCEEEEEeCCC-----cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCC-------CcEEEEecCCCCe
Q 018675           85 SGKLLATASFDA-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-------KSVWIWEVMPGNE  152 (352)
Q Consensus        85 ~~~~l~s~~~d~-----~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-------~~v~vwd~~~~~~  152 (352)
                      ++++++.|+.++     .+.+||..+..+..+..+........++.+  ++.+++.|+.+       ..+.+||+... .
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~  184 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN-E  184 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT-E
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC-c
Confidence            677888887654     456777766665544333221112222222  55666666543       35778887543 2


Q ss_pred             eEEEEEeecCccCeeEEEEcCCCCEEEEEeCC-----CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC
Q 018675          153 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD  227 (352)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~  227 (352)
                      ...+..+.........+.  .++.+++.|+.+     ..+.+||...   ..|..+..+......|.    .+.+  ++.
T Consensus       185 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~---~~W~~~~~~~~~r~~~~----~~~~--~~~  253 (302)
T 2xn4_A          185 WTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTT---NAWRQVADMNMCRRNAG----VCAV--NGL  253 (302)
T ss_dssp             EEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTT---TEEEEECCCSSCCBSCE----EEEE--TTE
T ss_pred             EEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCC---CCEeeCCCCCCccccCe----EEEE--CCE
Confidence            222221111111111222  245666777654     3577786543   34554433322222221    1222  566


Q ss_pred             EEEEEeCCC-----cEEEEcCC
Q 018675          228 KLVSCSDDL-----TIKIWGAD  244 (352)
Q Consensus       228 ~l~s~~~dg-----~i~iwd~~  244 (352)
                      .++.|+.++     .+.+||.+
T Consensus       254 i~v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          254 LYVVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             EEEECCBCSSSBCCCEEEEETT
T ss_pred             EEEECCcCCCcccccEEEEcCC
Confidence            677776553     35666653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=92.16  E-value=8.9  Score=37.09  Aligned_cols=180  Identities=8%  Similarity=0.023  Sum_probs=98.8

Q ss_pred             CCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC-CCEEEEEeCCCcEEEEEccCCce--eeeEeeccccCCeeE
Q 018675           47 GDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDY--ECVATLEGHENEVKS  123 (352)
Q Consensus        47 ~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~i~~~~~~~~--~~~~~~~~h~~~v~~  123 (352)
                      ....|+..++.....    ..++  .....+..++|++. ++++++-...+.|..++..+...  .....+.........
T Consensus       402 n~~~Ir~i~l~~~~~----~~l~--~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G  475 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEY----TSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  475 (791)
T ss_dssp             CBSSEEEECTTSCCC----EEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             cccceeEeeccCCcc----eeee--cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence            456677777654321    1111  12345778999885 45555555667787776543210  112222323345678


Q ss_pred             EEECCCC-cEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-C-CcEEEEecCCCCCCCc
Q 018675          124 VSWNASG-TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-D-NTIKVWWAEDTDSDNW  200 (352)
Q Consensus       124 v~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d-~~i~iw~~~~~~~~~~  200 (352)
                      |++.+.+ +++++-...+.|.+.++.... ...  .+.........|++.|....|+.+.. . +.|...++....    
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~--l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~----  548 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----  548 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSS-EEE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCCCCe-EEE--EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc----
Confidence            8888766 455565667889988875332 211  12223345678999987655555443 3 567766654321    


Q ss_pred             eeEeeeeccCCCCcccEEEEEEcCCCCEEE-EEeCCCcEEEEcCC
Q 018675          201 HCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGAD  244 (352)
Q Consensus       201 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-s~~~dg~i~iwd~~  244 (352)
                        ...+..   ......+.|++++.+..|. +=...+.|..++++
T Consensus       549 --~~~lv~---~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d  588 (791)
T 3m0c_C          549 --IYSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  588 (791)
T ss_dssp             --EEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             --eEEEEe---CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence              111211   1224678899997655544 43455678888765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=92.09  E-value=7.7  Score=36.17  Aligned_cols=111  Identities=8%  Similarity=0.052  Sum_probs=62.1

Q ss_pred             cEEEEeeC-CCeEEEEec-CCCceeeeeeeeeeccee------cceEEEEECCCCCE----EEEEeCCCcEEEEEccCCc
Q 018675           40 PVFASCSG-DKTVRIWEQ-SASSRFWNCKAVLEEMHT------RTVRSCAWSPSGKL----LATASFDATTCIWEDVGGD  107 (352)
Q Consensus        40 ~~l~s~s~-D~~v~~w~~-~~~~~~~~~~~~~~~~h~------~~v~~~~~s~~~~~----l~s~~~d~~i~i~~~~~~~  107 (352)
                      ..++.++. ++.|.-+|. .+++.+|+..........      .....++++|.+..    ++.++.|+.+..+|..+++
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence            45666677 899999999 899888876432211000      00122345443333    7778889999999988776


Q ss_pred             eeeeEeecccc--CCeeE-EEECCCCcEEEEee------CCCcEEEEecCCCCe
Q 018675          108 YECVATLEGHE--NEVKS-VSWNASGTLLATCG------RDKSVWIWEVMPGNE  152 (352)
Q Consensus       108 ~~~~~~~~~h~--~~v~~-v~~~~~~~~l~s~~------~d~~v~vwd~~~~~~  152 (352)
                      ..=...+..+.  ..+.+ ... .++ .++.++      .++.|..+|...++.
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~  194 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQ  194 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred             EEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcE
Confidence            42112222111  01111 111 134 444444      378999999887753

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.95  E-value=5.3  Score=35.77  Aligned_cols=113  Identities=11%  Similarity=0.139  Sum_probs=59.7

Q ss_pred             CCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeec------CccCeeEEEEcCC---CCEEEEEe-C-----
Q 018675          119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG------HAQDVKMVQWHPT---MDVLFSCS-Y-----  183 (352)
Q Consensus       119 ~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~------h~~~v~~~~~~~~---~~~l~s~~-~-----  183 (352)
                      ...+.++|.|+|.++++-...+.|++++...+. ...+..+..      .......++|+|+   +..|..+. .     
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~-~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS-VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc-EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            456799999999987765444567777643332 222222211      2345668999995   44444333 2     


Q ss_pred             -------CCcEEEEecCCCCC--CCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC
Q 018675          184 -------DNTIKVWWAEDTDS--DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD  234 (352)
Q Consensus       184 -------d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~  234 (352)
                             ...|.-++......  .....+.........|  ....|.|.|+|.++++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H--~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCC--CCCeEeECCCCeEEEEECC
Confidence                   12344443322110  0111111111111224  4678999999998887654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=91.79  E-value=8  Score=35.77  Aligned_cols=66  Identities=5%  Similarity=0.017  Sum_probs=38.9

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEE-EEECCCCCEEEEEeC------CCcEEEEEccCCce
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRS-CAWSPSGKLLATASF------DATTCIWEDVGGDY  108 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~~~------d~~i~i~~~~~~~~  108 (352)
                      ..++.++.|+.+..+|..+++..|+....- ......+.+ -... ++. ++.++.      ++.+..+|..+++.
T Consensus       116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~-~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~  188 (571)
T 2ad6_A          116 GQIVKKQANGHLLALDAKTGKINWEVEVCD-PKVGSTLTQAPFVA-KDT-VLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEE-TTE-EEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEecCCC-CCccceeccCCEEE-CCE-EEEEecCCccCCCCEEEEEECCCCcE
Confidence            467777889999999999998888653211 000001110 0011 444 444443      78899999877753

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.37  E-value=4.6  Score=32.22  Aligned_cols=117  Identities=13%  Similarity=0.099  Sum_probs=62.9

Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeE-eeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEc
Q 018675          164 QDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCV-QTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG  242 (352)
Q Consensus       164 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd  242 (352)
                      ..+..++|+|++.+.++  .++.+.-.+........|.-. ..+-.  .+-. .-.++.|.|+|.+.++  .||.|.-++
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~--~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGN--GGWN-QFQFLFFDPNGYLYAV--SKDKLYKAS  113 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEEC--SCGG-GCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecc--cccc-cceEEEECCCCCEEEe--CCCEEEEeC
Confidence            46789999998886555  566544333222222222111 01100  0111 1357889999998888  569887775


Q ss_pred             CCccccccCCCCccceeeEEe-ecccCcceEEEEecCCceEEecCCCCeEEEE
Q 018675          243 ADITRMQSGDGYASWRHLCTI-SGYHDRTIFSVHWSREGIIASGAADDSVQFF  294 (352)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~  294 (352)
                      -..      .+...|...... -..-=..+..+.+.|++.|.+.. |+.++-.
T Consensus       114 pP~------~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~  159 (236)
T 1tl2_A          114 PPQ------SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKA  159 (236)
T ss_dssp             CCC------STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEE
T ss_pred             CCc------CCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEec
Confidence            311      111233221111 10011346778889999888887 8875433

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.28  E-value=5.7  Score=33.03  Aligned_cols=186  Identities=10%  Similarity=0.118  Sum_probs=87.2

Q ss_pred             cEEEEeeCC----CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC------CcEEEEEccCCcee
Q 018675           40 PVFASCSGD----KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD------ATTCIWEDVGGDYE  109 (352)
Q Consensus        40 ~~l~s~s~D----~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------~~i~i~~~~~~~~~  109 (352)
                      .+++.||.+    ..+.+||..+..  |......... ...-.++.+  ++++++.|+.+      ..+.+||..+..+.
T Consensus        57 ~lyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~  131 (306)
T 3ii7_A           57 VVYILGGSQLFPIKRMDCYNVVKDS--WYSKLGPPTP-RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH  131 (306)
T ss_dssp             EEEEECCBSSSBCCEEEEEETTTTE--EEEEECCSSC-CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCCcceEEEEeCCCCe--EEECCCCCcc-ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence            456666644    556677766542  3322111100 011111222  67788888765      45778887776665


Q ss_pred             eeEeeccccCCeeEEEECCCCcEEEEeeC---------CCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEE
Q 018675          110 CVATLEGHENEVKSVSWNASGTLLATCGR---------DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFS  180 (352)
Q Consensus       110 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---------d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  180 (352)
                      .+..+......-.++.  -++.+++.|+.         -..+.+||+... ....+..+....... ++... ++.+++.
T Consensus       132 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~-~~~~~-~~~i~v~  206 (306)
T 3ii7_A          132 TKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE-TWTELCPMIEARKNH-GLVFV-KDKIFAV  206 (306)
T ss_dssp             EECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTT-EEEEECCCSSCCBSC-EEEEE-TTEEEEE
T ss_pred             eCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCC-eEEECCCccchhhcc-eEEEE-CCEEEEE
Confidence            4433322111112222  25566666653         345778887543 232222111111111 12222 4556666


Q ss_pred             EeCC-----CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC-----CcEEEEcCC
Q 018675          181 CSYD-----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD-----LTIKIWGAD  244 (352)
Q Consensus       181 ~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d-----g~i~iwd~~  244 (352)
                      |+.+     ..+.+||...   ..|..+..+......|    .++.+  ++..++.|+.+     ..+.+||..
T Consensus       207 GG~~~~~~~~~~~~yd~~~---~~W~~~~~~p~~r~~~----~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~  271 (306)
T 3ii7_A          207 GGQNGLGGLDNVEYYDIKL---NEWKMVSPMPWKGVTV----KCAAV--GSIVYVLAGFQGVGRLGHILEYNTE  271 (306)
T ss_dssp             CCEETTEEBCCEEEEETTT---TEEEECCCCSCCBSCC----EEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred             eCCCCCCCCceEEEeeCCC---CcEEECCCCCCCccce----eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence            6643     3567776543   3455443332222222    12222  56677777754     346666653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.24  E-value=6.6  Score=33.73  Aligned_cols=112  Identities=12%  Similarity=0.089  Sum_probs=63.0

Q ss_pred             cCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEe----ecCccCeeEEEEcCC---CCEEEEE-e--CCCcE
Q 018675          118 ENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL----QGHAQDVKMVQWHPT---MDVLFSC-S--YDNTI  187 (352)
Q Consensus       118 ~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~----~~h~~~v~~~~~~~~---~~~l~s~-~--~d~~i  187 (352)
                      -...+.++|.|+|.++++--..+.|++++...+.. ..+..+    .........++++|+   ...|... +  .++.|
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            45678999999999887766588888887543332 222221    122345788999995   3344332 2  34445


Q ss_pred             EEEecCCCC-----CCCceeEe-eeeccCCCCcccEEEEEEcCCCCEEEEEe
Q 018675          188 KVWWAEDTD-----SDNWHCVQ-TISESNNGHSSTIWALSFNAKGDKLVSCS  233 (352)
Q Consensus       188 ~iw~~~~~~-----~~~~~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~s~~  233 (352)
                      .-|.....+     ......+. .+. ....|.  -..|.|.|+|.++++.+
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p-~~~~H~--g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIP-KGVIHN--GGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEEC-CCSSCC--CCCEEECTTSCEEEECB
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCC-CCCCcc--CccccCCCCCCEEEEEC
Confidence            445443311     11112111 121 122343  35689999999888865

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=90.95  E-value=6.1  Score=32.83  Aligned_cols=185  Identities=10%  Similarity=0.114  Sum_probs=87.6

Q ss_pred             EEEEeeCC--CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC----CcEEEEEccCCceeeeEee
Q 018675           41 VFASCSGD--KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD----ATTCIWEDVGGDYECVATL  114 (352)
Q Consensus        41 ~l~s~s~D--~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----~~i~i~~~~~~~~~~~~~~  114 (352)
                      +++.||.+  ..+.+||..+..  |......... ...-.++.  .++++++.|+.+    ..+.+||..+..+..+..+
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~--W~~~~~~p~~-r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~   88 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYS--WTDIRCPFEK-RRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP   88 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTE--EEECCCCSCC-CBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred             EEEEeCCCCCceEEEecCCCCC--EecCCCCCcc-cceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence            45555543  567778876542  3322111110 01111122  267788888765    5677888877766555443


Q ss_pred             ccccCCeeEEEECCCCcEEEEeeCC------CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-----
Q 018675          115 EGHENEVKSVSWNASGTLLATCGRD------KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-----  183 (352)
Q Consensus       115 ~~h~~~v~~v~~~~~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----  183 (352)
                      ......-.++.+  ++.+++.|+.+      ..+.+||.... ....+..+.........+.  .++.+++.|+.     
T Consensus        89 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~  163 (306)
T 3ii7_A           89 PTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTE-SWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNV  163 (306)
T ss_dssp             SSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTT-EEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTT
T ss_pred             CccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCC-ceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCC
Confidence            322222222222  56677777765      45778887543 2222221111111111122  24555566553     


Q ss_pred             ----CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCC-----cEEEEcCC
Q 018675          184 ----DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL-----TIKIWGAD  244 (352)
Q Consensus       184 ----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg-----~i~iwd~~  244 (352)
                          ...+.+||...   ..|..+..+......|.    .+.+  ++..++.||.++     .+.+||..
T Consensus       164 ~~~~~~~~~~yd~~~---~~W~~~~~~p~~r~~~~----~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~  224 (306)
T 3ii7_A          164 SGRVLNSCEVYDPAT---ETWTELCPMIEARKNHG----LVFV--KDKIFAVGGQNGLGGLDNVEYYDIK  224 (306)
T ss_dssp             TCEECCCEEEEETTT---TEEEEECCCSSCCBSCE----EEEE--TTEEEEECCEETTEEBCCEEEEETT
T ss_pred             cccccceEEEeCCCC---CeEEECCCccchhhcce----EEEE--CCEEEEEeCCCCCCCCceEEEeeCC
Confidence                34467776543   34554433322222222    1222  456667766543     46667654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=90.88  E-value=6.1  Score=32.74  Aligned_cols=146  Identities=18%  Similarity=0.284  Sum_probs=71.6

Q ss_pred             CCCEEEEEeCCC-----cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCC-----cEEEEecCCCCeeE
Q 018675           85 SGKLLATASFDA-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK-----SVWIWEVMPGNEFE  154 (352)
Q Consensus        85 ~~~~l~s~~~d~-----~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----~v~vwd~~~~~~~~  154 (352)
                      ++++++.|+.++     .+.+||..+.++..+..+......-.++.+  ++.+++.|+.++     .+.+||+... ...
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~-~W~  137 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN-EWF  137 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT-EEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC-eEe
Confidence            677888887553     577888777666554433322222222222  566777777553     4667776533 222


Q ss_pred             EEEEeecCccCeeEEEEcCCCCEEEEEeCC-------CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC
Q 018675          155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-------NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD  227 (352)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-------~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~  227 (352)
                      .+..+....... ++.. .++.+++.|+.+       ..+.+||..   ...|..+..+......|.    .+.+  ++.
T Consensus       138 ~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~---~~~W~~~~~~p~~r~~~~----~~~~--~~~  206 (302)
T 2xn4_A          138 HVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNAT---TNEWTYIAEMSTRRSGAG----VGVL--NNL  206 (302)
T ss_dssp             EECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETT---TTEEEEECCCSSCCBSCE----EEEE--TTE
T ss_pred             ecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCC---CCcEEECCCCcccccccc----EEEE--CCE
Confidence            222111111111 1222 245566666542       346777653   334554433322222221    2222  466


Q ss_pred             EEEEEeCCC-----cEEEEcCC
Q 018675          228 KLVSCSDDL-----TIKIWGAD  244 (352)
Q Consensus       228 ~l~s~~~dg-----~i~iwd~~  244 (352)
                      +++.||.++     .+.+||..
T Consensus       207 iyv~GG~~~~~~~~~~~~yd~~  228 (302)
T 2xn4_A          207 LYAVGGHDGPLVRKSVEVYDPT  228 (302)
T ss_dssp             EEEECCBSSSSBCCCEEEEETT
T ss_pred             EEEECCCCCCcccceEEEEeCC
Confidence            777777643     56677754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=90.73  E-value=6.5  Score=32.77  Aligned_cols=146  Identities=14%  Similarity=0.228  Sum_probs=70.6

Q ss_pred             CCCEEEEEeC----C-----CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCC-----CcEEEEecCCC
Q 018675           85 SGKLLATASF----D-----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-----KSVWIWEVMPG  150 (352)
Q Consensus        85 ~~~~l~s~~~----d-----~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~v~vwd~~~~  150 (352)
                      ++++++.|+.    +     ..+.+||..+..+..+..+........++.+  ++.+++.|+.+     ..+.++|....
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            6777777775    2     3577788777665544333221122222222  56666666643     35777886543


Q ss_pred             CeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCC-----CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC
Q 018675          151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK  225 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~  225 (352)
                       ....+..+.........+.+  ++.+++.|+.+     ..+.+||..   ...|..+..+......|.    ++.+  +
T Consensus       148 -~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~---~~~W~~~~~~p~~r~~~~----~~~~--~  215 (308)
T 1zgk_A          148 -EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPE---RNEWRMITAMNTIRSGAG----VCVL--H  215 (308)
T ss_dssp             -EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT---TTEEEECCCCSSCCBSCE----EEEE--T
T ss_pred             -eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCC---CCeEeeCCCCCCccccce----EEEE--C
Confidence             22222111111111112222  45666666654     357777653   334544333222222221    2222  5


Q ss_pred             CCEEEEEeCC-----CcEEEEcCC
Q 018675          226 GDKLVSCSDD-----LTIKIWGAD  244 (352)
Q Consensus       226 ~~~l~s~~~d-----g~i~iwd~~  244 (352)
                      +..++.||.+     ..+.+||+.
T Consensus       216 ~~iyv~GG~~~~~~~~~v~~yd~~  239 (308)
T 1zgk_A          216 NCIYAAGGYDGQDQLNSVERYDVE  239 (308)
T ss_dssp             TEEEEECCBCSSSBCCCEEEEETT
T ss_pred             CEEEEEeCCCCCCccceEEEEeCC
Confidence            6667777654     457777764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=90.66  E-value=6.9  Score=32.92  Aligned_cols=178  Identities=8%  Similarity=0.026  Sum_probs=99.6

Q ss_pred             CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCC-EEEEEeCCCcEEEEEccCC---ceeeeEeeccccCCeeE
Q 018675           48 DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK-LLATASFDATTCIWEDVGG---DYECVATLEGHENEVKS  123 (352)
Q Consensus        48 D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~i~~~~~~---~~~~~~~~~~h~~~v~~  123 (352)
                      ...|+..++.+....    ..+.  .-.....++|++.++ +..+-...+.|..++..+.   .. ....+...-.....
T Consensus         9 ~~~I~~i~~~~~~~~----~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~-~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYT----SLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTVISRDIQAPDG   81 (316)
T ss_dssp             BSSEEEEETTSCCCE----EEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCE
T ss_pred             CCeEEEEECCCcceE----ehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc-cEEEEeCCCCCcCE
Confidence            456888887764321    1111  124567899998654 5555556688888876541   11 11122222245678


Q ss_pred             EEECCC-CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCC--CcEEEEecCCCCCCCc
Q 018675          124 VSWNAS-GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD--NTIKVWWAEDTDSDNW  200 (352)
Q Consensus       124 v~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--~~i~iw~~~~~~~~~~  200 (352)
                      +++.+. +++.++-...+.|.+.++... ....  ...........+++.|.+..|+.+...  +.|...++....    
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~-~~~~--~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~----  154 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----  154 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSS-SEEE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCC-ceEE--EEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC----
Confidence            888864 455556567788999987532 2221  122223456788999866655544433  567666553321    


Q ss_pred             eeEeeeeccCCCCcccEEEEEEcCCCCEEE-EEeCCCcEEEEcCC
Q 018675          201 HCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGAD  244 (352)
Q Consensus       201 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-s~~~dg~i~iwd~~  244 (352)
                        ...+..   ......+.|+++|++..|. +-...+.|..+|++
T Consensus       155 --~~~~~~---~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          155 --IYSLVT---ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             --EEEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             --eEEEEE---CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence              111111   1124577899998765554 44566789988875

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=90.59  E-value=7.7  Score=33.36  Aligned_cols=108  Identities=12%  Similarity=0.115  Sum_probs=58.1

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC----CCEEEEEeC--
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS----GKLLATASF--   94 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~--   94 (352)
                      ...-++|+|.|+      +.+++ +..++.|++++.. +........ +..........++|+|+    +.+.++-+.  
T Consensus        28 l~~P~~ia~~pd------G~l~V-~e~~g~I~~~d~~-G~~~~~~~~-v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~   98 (354)
T 3a9g_A           28 LEVPWSIAPLGG------GRYLV-TERPGRLVLISPS-GKKLVASFD-VANVGEAGLLGLALHPEFPKKSWVYLYASYFA   98 (354)
T ss_dssp             CSCEEEEEEEET------TEEEE-EETTTEEEEECSS-CEEEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCCCeEEEEcCC------CeEEE-EeCCCEEEEEeCC-CceEeeccc-eeecCCCceeeEEeCCCCCcCCEEEEEEeccC
Confidence            445678999996      34444 4667999888632 221110000 10111245788999997    555555442  


Q ss_pred             -C----CcEEEEEccCC--c---eeee-Eeec-cccCCeeEEEECCCCcEEEEee
Q 018675           95 -D----ATTCIWEDVGG--D---YECV-ATLE-GHENEVKSVSWNASGTLLATCG  137 (352)
Q Consensus        95 -d----~~i~i~~~~~~--~---~~~~-~~~~-~h~~~v~~v~~~~~~~~l~s~~  137 (352)
                       +    +.|..++....  .   .+.+ ..+. ........+.|.|+|.+.++.+
T Consensus        99 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A           99 EGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             GGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             CCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence             3    45666665433  1   1111 1122 1111346799999998877754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=90.40  E-value=13  Score=35.86  Aligned_cols=203  Identities=9%  Similarity=-0.021  Sum_probs=105.4

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCC-EEEEEeCCCcEE
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK-LLATASFDATTC   99 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~   99 (352)
                      ...+.+|+|.+..     +.++.+-...+.|+.+++............+ ...-.....+++.+.++ +.++-...+.|.
T Consensus       423 ~~~~~gl~~d~~~-----~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~  496 (791)
T 3m0c_C          423 LRNVVALDTEVAS-----NRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSNIYWTDSVLGTVS  496 (791)
T ss_dssp             CSSEEEEEEETTT-----TEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceEEEeecccC-----CeeEEeeccceeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecCCcEEEEecCCCeEE
Confidence            4456678887743     3455565566777777765421100001111 11123456788887664 555556677888


Q ss_pred             EEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-C-CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCE
Q 018675          100 IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-D-KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV  177 (352)
Q Consensus       100 i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d-~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  177 (352)
                      +.+..+.....  .+...-.....|++.|....|+-+.. . ..|...++.... ..  ......-.....|++.+....
T Consensus       497 v~~ldG~~~~~--l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~--~lv~~~l~~P~GLavD~~~~~  571 (791)
T 3m0c_C          497 VADTKGVKRKT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IY--SLVTENIQWPNGITLDLLSGR  571 (791)
T ss_dssp             EEETTSSSEEE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EE--EEECSSCSCEEEEEEETTTTE
T ss_pred             EEeCCCCeEEE--EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eE--EEEeCCCCCceEEEEecCCCe
Confidence            88765543221  22223345789999987554444432 2 567777764322 11  122222345678899977666


Q ss_pred             EEEE-eCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEc
Q 018675          178 LFSC-SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG  242 (352)
Q Consensus       178 l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd  242 (352)
                      |+.+ ...+.|...++.....   .   .+... .+......+|++..+ .++++-...+.|...+
T Consensus       572 LYwaD~~~~~I~~~d~dG~~~---~---~v~~~-~~~l~~P~glav~~~-~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          572 LYWVDSKLHSISSIDVNGGNR---K---TILED-EKRLAHPFSLAVFED-KVFWTDIINEAIFSAN  629 (791)
T ss_dssp             EEEEETTTTEEEEEETTSCSC---E---EEEEC-TTTTSSEEEEEEETT-EEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCcEEEEecCCCce---E---EEecC-CCccCCCCEEEEeCC-EEEEEECCCCEEEEEe
Confidence            6555 4456787777644321   1   11111 011123446666433 4444545556666665

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=90.34  E-value=7.5  Score=32.84  Aligned_cols=221  Identities=9%  Similarity=-0.021  Sum_probs=117.6

Q ss_pred             CCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC-CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEE
Q 018675           47 GDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS-GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS  125 (352)
Q Consensus        47 ~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~  125 (352)
                      ....|+..++........  ..+.  ....+.+++|++. +.+..+-...+.|..++..++.... ..+...-.....++
T Consensus        11 ~~~~I~~i~l~~~~~~~~--~~~~--~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-~~~~~~l~~p~gla   85 (318)
T 3sov_A           11 NRRDLRLVDATNGKENAT--IVVG--GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-NVVVSGLLSPDGLA   85 (318)
T ss_dssp             CEEEEEEEETTCTTSCCE--EEEE--EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-EEEEECCSCCCEEE
T ss_pred             ccCeEEEEECCCCceEEE--EEec--CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-EEEcCCCCCccEEE
Confidence            457888888876531111  1111  1235678899985 4555565567788888765542111 11111123466788


Q ss_pred             ECC-CCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC--CCcEEEEecCCCCCCCcee
Q 018675          126 WNA-SGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY--DNTIKVWWAEDTDSDNWHC  202 (352)
Q Consensus       126 ~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--d~~i~iw~~~~~~~~~~~~  202 (352)
                      +.+ .+.++++-...+.|.+.++... ....+  ..........+++.|.+..|+.+..  .+.|...+......     
T Consensus        86 vd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----  157 (318)
T 3sov_A           86 CDWLGEKLYWTDSETNRIEVSNLDGS-LRKVL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-----  157 (318)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSC-SCEEE--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-----
T ss_pred             EEcCCCeEEEEECCCCEEEEEECCCC-cEEEE--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-----
Confidence            886 4555566566778999887532 21211  2223345678889887555555442  46676665543211     


Q ss_pred             EeeeeccCCCCcccEEEEEEcCCCCEE-EEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCce
Q 018675          203 VQTISESNNGHSSTIWALSFNAKGDKL-VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI  281 (352)
Q Consensus       203 ~~~~~~~~~~h~~~i~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  281 (352)
                       ..+..   ..-...+.|+++|++..| ++=+..+.|..++++.....            .+..........++...+..
T Consensus       158 -~~~~~---~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~------------~~~~~~~~~P~glav~~~~l  221 (318)
T 3sov_A          158 -FIIIN---SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ------------AVVKGSLPHPFALTLFEDIL  221 (318)
T ss_dssp             -EEEEC---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------------EEECSCCSCEEEEEEETTEE
T ss_pred             -EEEEE---CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE------------EEecCCCCCceEEEEeCCEE
Confidence             11111   112356789999865544 45456678888886521110            00001122344555555555


Q ss_pred             EEecCCCCeEEEEEc
Q 018675          282 IASGAADDSVQFFVE  296 (352)
Q Consensus       282 ~~s~~~d~~v~~~~~  296 (352)
                      +.+-...+.|..+..
T Consensus       222 ywtd~~~~~V~~~~~  236 (318)
T 3sov_A          222 YWTDWSTHSILACNK  236 (318)
T ss_dssp             EEEETTTTEEEEEET
T ss_pred             EEEecCCCeEEEEEC
Confidence            555555566665544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=90.25  E-value=7.6  Score=32.79  Aligned_cols=197  Identities=9%  Similarity=-0.037  Sum_probs=108.1

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC-CCEEEEEeCCCcEEEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS-GKLLATASFDATTCIW  101 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~i~  101 (352)
                      ...+++|.+.+     +.++.+-...+.|..++.......   ..... ..-.....+++.+. +.+.++-...+.|.++
T Consensus        36 ~~~~ld~d~~~-----~~lyw~D~~~~~I~r~~~~g~~~~---~~~~~-~~l~~p~glavd~~~g~ly~~d~~~~~I~~~  106 (318)
T 3sov_A           36 DAAAVDFVFSH-----GLIYWSDVSEEAIKRTEFNKTESV---QNVVV-SGLLSPDGLACDWLGEKLYWTDSETNRIEVS  106 (318)
T ss_dssp             EEEEEEEEGGG-----TEEEEEETTTTEEEEEETTSSSCC---CEEEE-ECCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccEEEEEEeCC-----CEEEEEECCCCcEEEEEccCCCce---EEEEc-CCCCCccEEEEEcCCCeEEEEECCCCEEEEE
Confidence            45678898853     345666566788888887654210   00110 01124567888874 4555666667788888


Q ss_pred             EccCCceeeeEeeccccCCeeEEEECCCCcEEEEee--CCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE
Q 018675          102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF  179 (352)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  179 (352)
                      +..+.....  ...........+++.|.+..|+-+.  ..+.|...++.. .....+  ....-..-..++++|++..|+
T Consensus       107 ~~dG~~~~~--l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~--~~~~l~~Pnglavd~~~~~lY  181 (318)
T 3sov_A          107 NLDGSLRKV--LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFII--INSEIYWPNGLTLDYEEQKLY  181 (318)
T ss_dssp             ETTSCSCEE--EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEE--ECSSCSCEEEEEEETTTTEEE
T ss_pred             ECCCCcEEE--EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEE--EECCCCCccEEEEeccCCEEE
Confidence            765432221  1223335678899998655544444  246677776542 221111  112223457899998766555


Q ss_pred             EE-eCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          180 SC-SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       180 s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      .+ +..+.|..++......   .   .+..   +.......+++.. +..+.+-...+.|..++.
T Consensus       182 ~aD~~~~~I~~~d~dG~~~---~---~~~~---~~~~~P~glav~~-~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          182 WADAKLNFIHKSNLDGTNR---Q---AVVK---GSLPHPFALTLFE-DILYWTDWSTHSILACNK  236 (318)
T ss_dssp             EEETTTTEEEEEETTSCSC---E---EEEC---SCCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             EEECCCCEEEEEcCCCCce---E---EEec---CCCCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence            44 5567788887653221   1   1111   1123455677753 344555555677777764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=90.15  E-value=7.1  Score=32.28  Aligned_cols=145  Identities=13%  Similarity=0.235  Sum_probs=72.3

Q ss_pred             CCCEEEEEeCCC-----cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCC-----CcEEEEecCCCCeeE
Q 018675           85 SGKLLATASFDA-----TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-----KSVWIWEVMPGNEFE  154 (352)
Q Consensus        85 ~~~~l~s~~~d~-----~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~v~vwd~~~~~~~~  154 (352)
                      ++++++.|+.++     .+.+||..+..+..+..+......-.++.+  ++.+++.|+.+     ..+.++|+... ...
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~-~W~  188 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG-HWT  188 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT-EEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC-cEE
Confidence            677888877543     577788777766555443322222222222  56677777654     45778887543 333


Q ss_pred             EEEEeecCccCeeEEEEcCCCCEEEEEeCC-----CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE
Q 018675          155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL  229 (352)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  229 (352)
                      .+..+.........+.  .++.+++.|+.+     ..+.+||...   ..|..+..+......|.    ++.+  ++..+
T Consensus       189 ~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~---~~W~~~~~~p~~r~~~~----~~~~--~~~i~  257 (301)
T 2vpj_A          189 NVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRT---DSWTTVTSMTTPRCYVG----ATVL--RGRLY  257 (301)
T ss_dssp             EECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTT---TEEEEECCCSSCCBSCE----EEEE--TTEEE
T ss_pred             eCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCC---CcEEECCCCCCccccee----EEEE--CCEEE
Confidence            2221111111111222  245666777654     4677886643   34554433322222221    2222  56667


Q ss_pred             EEEeCCC-----cEEEEcC
Q 018675          230 VSCSDDL-----TIKIWGA  243 (352)
Q Consensus       230 ~s~~~dg-----~i~iwd~  243 (352)
                      +.|+.++     .+.+||.
T Consensus       258 v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          258 AIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             EECCBCSSSBEEEEEEEET
T ss_pred             EEcCcCCCcccccEEEEcC
Confidence            7776553     4555654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=89.94  E-value=18  Score=36.68  Aligned_cols=152  Identities=12%  Similarity=0.163  Sum_probs=82.9

Q ss_pred             EEEEECCC-CCEEEEEe----------CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEe
Q 018675           78 RSCAWSPS-GKLLATAS----------FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE  146 (352)
Q Consensus        78 ~~~~~s~~-~~~l~s~~----------~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd  146 (352)
                      ..+.|..+ ..+++.|.          ..|.|.+|+....+.+.+... ...++|++++-- +| +|++|- .+++++|+
T Consensus       835 ~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~  910 (1158)
T 3ei3_A          835 VSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVKGAVYSMVEF-NG-KLLASI-NSTVRLYE  910 (1158)
T ss_dssp             EEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EESSCEEEEEEE-TT-EEEEEE-TTEEEEEE
T ss_pred             EEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcCCcCEEEeee-CC-EEEEEc-CCEEEEEE
Confidence            33445433 46788776          236788888765555544433 346788888633 34 444443 37899999


Q ss_pred             cCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC
Q 018675          147 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG  226 (352)
Q Consensus       147 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~  226 (352)
                      +...+...+...   +...+..+.....+++++.|..-..+.+...... ...   +..+  ..+-+..++.++.+=-+ 
T Consensus       911 l~~~~~L~~~~~---~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~-~~~---L~~~--a~D~~~~~vta~~~ld~-  980 (1158)
T 3ei3_A          911 WTTEKELRTECN---HYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPM-EGN---FEEI--ARDFNPNWMSAVEILDD-  980 (1158)
T ss_dssp             ECTTSCEEEEEE---ECCCSCEEEEEEETTEEEEEESSBCEEEEEEETT-TTE---EEEE--EECCSCBCEEEEEEEET-
T ss_pred             CCCCceEEEEee---ccccEEEEEEeccCCEEEEEEhhheEEEEEEEcC-CCe---EEEE--EeecccccEEEEEEEcc-
Confidence            865443221111   1112333333334667888877777766532221 111   1111  11223456777776433 


Q ss_pred             CEEEEEeCCCcEEEEcC
Q 018675          227 DKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       227 ~~l~s~~~dg~i~iwd~  243 (352)
                      ..++.+..+|.+.+...
T Consensus       981 ~t~l~aD~~gNl~vl~~  997 (1158)
T 3ei3_A          981 DNFLGAENAFNLFVCQK  997 (1158)
T ss_dssp             TEEEEEETTSEEEEEEE
T ss_pred             CcEEEEcCCCcEEEEec
Confidence            46777888888887753

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=89.76  E-value=8.7  Score=32.72  Aligned_cols=51  Identities=6%  Similarity=-0.018  Sum_probs=26.3

Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCC------CcEEEEec
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD------KSVWIWEV  147 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------~~v~vwd~  147 (352)
                      ..+.+||..+..+..+..+......-.++.. -++.+++.|+.+      ..+..+|+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence            4677888877776655444321111012222 245666666532      34666765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=89.65  E-value=13  Score=34.51  Aligned_cols=56  Identities=11%  Similarity=0.142  Sum_probs=33.1

Q ss_pred             CcEEEEEccCCceeeeEeecccc--------CCeeEEEEC-CCCc---EEEEeeCCCcEEEEecCCCCe
Q 018675           96 ATTCIWEDVGGDYECVATLEGHE--------NEVKSVSWN-ASGT---LLATCGRDKSVWIWEVMPGNE  152 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~--------~~v~~v~~~-~~~~---~l~s~~~d~~v~vwd~~~~~~  152 (352)
                      +.+..+|..+++..=......|.        .++. +... .+|+   .++.++.+|.+.++|...++.
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  358 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL  358 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence            57888888777643222222232        1121 1221 4563   688899999999999876653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=88.89  E-value=9.2  Score=31.82  Aligned_cols=145  Identities=14%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCC-----CcEEEEecCCCCeeE
Q 018675           85 SGKLLATASFD-----ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-----KSVWIWEVMPGNEFE  154 (352)
Q Consensus        85 ~~~~l~s~~~d-----~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~v~vwd~~~~~~~~  154 (352)
                      ++++++.|+.+     ..+.+||..+..+..+..+......-.++.+  ++.+++.|+.+     ..+.++|+... ...
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~  197 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN-EWR  197 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT-EEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC-eEe
Confidence            67777877654     3577788777665544333221222222222  56677777654     45778887543 222


Q ss_pred             EEEEeecCccCeeEEEEcCCCCEEEEEeCC-----CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE
Q 018675          155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL  229 (352)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  229 (352)
                      .+..+.........+.+  ++.+++.|+.+     ..+.+||+..   ..|..+..+......|.    .+.+  ++..+
T Consensus       198 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~---~~W~~~~~~p~~r~~~~----~~~~--~~~i~  266 (308)
T 1zgk_A          198 MITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET---ETWTFVAPMKHRRSALG----ITVH--QGRIY  266 (308)
T ss_dssp             ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT---TEEEECCCCSSCCBSCE----EEEE--TTEEE
T ss_pred             eCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC---CcEEECCCCCCCccceE----EEEE--CCEEE
Confidence            22111111111112222  55666777654     4577886543   34544333222222221    1222  45666


Q ss_pred             EEEeCCC-----cEEEEcC
Q 018675          230 VSCSDDL-----TIKIWGA  243 (352)
Q Consensus       230 ~s~~~dg-----~i~iwd~  243 (352)
                      +.|+.++     .+.+||.
T Consensus       267 v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          267 VLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             EECCBCSSCBCCEEEEEET
T ss_pred             EEcCcCCCcccceEEEEcC
Confidence            7776543     3555554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=88.69  E-value=11  Score=32.40  Aligned_cols=143  Identities=10%  Similarity=0.122  Sum_probs=78.0

Q ss_pred             CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCC----Cc---E-EEEeeC--CCcEEEEecCCCC-eeE
Q 018675           86 GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS----GT---L-LATCGR--DKSVWIWEVMPGN-EFE  154 (352)
Q Consensus        86 ~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~----~~---~-l~s~~~--d~~v~vwd~~~~~-~~~  154 (352)
                      ..+++.....+.+.+||.. ++  .+..+..  +.++.+..-|.    +.   + +++...  +++|.+|++.+.. ...
T Consensus        40 ~s~ii~t~k~~gL~Vydl~-G~--~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSLD-GK--MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             GCEEEEEETTTEEEEEETT-SC--EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             ccEEEEEcCCCCEEEEcCC-Cc--EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            3455656677889999984 43  3444432  56777766552    22   2 333334  5899999874322 222


Q ss_pred             EEEE----eecCccCeeEEEE--cCC-CC-EEEEEeCCCcEEEEecCCCCCC--CceeEeeeeccCCCCcccEEEEEEcC
Q 018675          155 CVSV----LQGHAQDVKMVQW--HPT-MD-VLFSCSYDNTIKVWWAEDTDSD--NWHCVQTISESNNGHSSTIWALSFNA  224 (352)
Q Consensus       155 ~~~~----~~~h~~~v~~~~~--~~~-~~-~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~h~~~i~~l~~~~  224 (352)
                      .+..    +......+..+++  +|. +. ++++...++.+..|.+......  ..+.+.++.     ....+-.+...+
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-----lgsq~EgcvvDd  189 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-----MNSQTEGMAADD  189 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-----CSSCEEEEEEET
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-----CCCCcceEEEcC
Confidence            2100    0011133444555  564 43 5778888899999877543221  122233332     124566777777


Q ss_pred             CCCEEEEEeCCCcE
Q 018675          225 KGDKLVSCSDDLTI  238 (352)
Q Consensus       225 ~~~~l~s~~~dg~i  238 (352)
                      ....|..+-++.-|
T Consensus       190 ~~g~Lyv~eEd~GI  203 (355)
T 3amr_A          190 EYGRLYIAEEDEAI  203 (355)
T ss_dssp             TTTEEEEEETTTEE
T ss_pred             CCCeEEEecccceE
Confidence            77777777776443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=87.76  E-value=11  Score=31.41  Aligned_cols=183  Identities=10%  Similarity=0.123  Sum_probs=84.7

Q ss_pred             EEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC----CC-------cEEEEEccCCceee
Q 018675           42 FASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF----DA-------TTCIWEDVGGDYEC  110 (352)
Q Consensus        42 l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----d~-------~i~i~~~~~~~~~~  110 (352)
                      ++.|+  ..+..||..+..  |.... ... ............++++++.|+.    ++       .+..||..+..+..
T Consensus         8 ~~~GG--~~~~~yd~~~~~--W~~~~-~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~   81 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANE--CYCAS-LSS-QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG   81 (315)
T ss_dssp             EEEET--TEEEEEETTTTE--EEEEE-CCC-CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred             EEEcC--CceEEECCCCCe--EecCC-CCC-CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence            34444  568888887653  44311 100 1112223334457888888884    11       25567776665544


Q ss_pred             eEeeccccCCeeEEEECCCCcEEEEeeCC--------CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEe
Q 018675          111 VATLEGHENEVKSVSWNASGTLLATCGRD--------KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS  182 (352)
Q Consensus       111 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d--------~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  182 (352)
                      +..+......-..+.+  ++.+++.|+.+        ..+.++|.... ....+..+....... ++.. .++.+++.|+
T Consensus        82 ~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG  156 (315)
T 4asc_A           82 MPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSF-KWGESDPLPYVVYGH-TVLS-HMDLVYVIGG  156 (315)
T ss_dssp             CCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTT-EEEECCCCSSCCBSC-EEEE-ETTEEEEECC
T ss_pred             CCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCC-cEeECCCCCCcccce-eEEE-ECCEEEEEeC
Confidence            3322211111112222  55666666632        45778887543 222222111111111 1222 3455666776


Q ss_pred             C-C-----CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCC-----cEEEEcCC
Q 018675          183 Y-D-----NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL-----TIKIWGAD  244 (352)
Q Consensus       183 ~-d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg-----~i~iwd~~  244 (352)
                      . +     ..+.+||...   ..|..+..+......|.    ++.+  ++..++.||.++     .+.+||..
T Consensus       157 ~~~~~~~~~~~~~yd~~~---~~W~~~~~~p~~r~~~~----~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~  220 (315)
T 4asc_A          157 KGSDRKCLNKMCVYDPKK---FEWKELAPMQTARSLFG----ATVH--DGRIIVAAGVTDTGLTSSAEVYSIT  220 (315)
T ss_dssp             BCTTSCBCCCEEEEETTT---TEEEECCCCSSCCBSCE----EEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred             CCCCCcccceEEEEeCCC---CeEEECCCCCCchhceE----EEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence            5 2     3577776543   34544433322222222    1222  566777777554     36666653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=87.56  E-value=12  Score=31.47  Aligned_cols=219  Identities=9%  Similarity=-0.010  Sum_probs=113.5

Q ss_pred             CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCc-EEEEeeCCCcEEEEecCCC---CeeEEEEEeecCccCeeEEE
Q 018675           95 DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPG---NEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        95 d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~h~~~v~~~~  170 (352)
                      ...|+..+..+.+...  .+. ....+..++|.+.+. ++++-..++.|..+++...   ....  ..+.........++
T Consensus         9 ~~~I~~i~~~~~~~~~--~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~--~~~~~~~~~p~gla   83 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTS--LIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGLA   83 (316)
T ss_dssp             BSSEEEEETTSCCCEE--EEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--EEECSSCSCCCEEE
T ss_pred             CCeEEEEECCCcceEe--hhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE--EEEeCCCCCcCEEE
Confidence            3457777765543322  222 235678999998654 5555556688888887531   1111  11222223456788


Q ss_pred             EcCCCC-EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC-C-CcEEEEcCCccc
Q 018675          171 WHPTMD-VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-D-LTIKIWGADITR  247 (352)
Q Consensus       171 ~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~-d-g~i~iwd~~~~~  247 (352)
                      +.+.+. +.++-...+.|.+.+.....      ...+..   ........++++|.+..|..... . +.|...+++...
T Consensus        84 vd~~~~~ly~~d~~~~~I~~~~~~g~~------~~~~~~---~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~  154 (316)
T 1ijq_A           84 VDWIHSNIYWTDSVLGTVSVADTKGVK------RKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  154 (316)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSS------EEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             EeecCCeEEEEECCCCEEEEEeCCCCc------eEEEEE---CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC
Confidence            876544 44555667788888754321      111111   11235678999996665443333 2 677777654211


Q ss_pred             cccCCCCccceeeEEeecccCcceEEEEecCC-c-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEE
Q 018675          248 MQSGDGYASWRHLCTISGYHDRTIFSVHWSRE-G-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQ  325 (352)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  325 (352)
                      .            ..+....-.....++++++ + ++.+-...+.|..++.....      ...+.. ....-.....++
T Consensus       155 ~------------~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~------~~~~~~-~~~~~~~P~gia  215 (316)
T 1ijq_A          155 I------------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN------RKTILE-DEKRLAHPFSLA  215 (316)
T ss_dssp             E------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------CEEEEE-CTTTTSSEEEEE
T ss_pred             e------------EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc------eEEEee-cCCccCCcEEEE
Confidence            1            0111111234566777753 3 44555556677777654311      112211 111122345677


Q ss_pred             ecCCCcceEEEecCCCeEEEEee
Q 018675          326 WSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       326 ~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      +.. + .++++-...+.|..++.
T Consensus       216 v~~-~-~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          216 VFE-D-KVFWTDIINEAIFSANR  236 (316)
T ss_dssp             EET-T-EEEEEETTTTEEEEEET
T ss_pred             EEC-C-EEEEEECCCCeEEEEeC
Confidence            743 3 57777777788877765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=87.13  E-value=17  Score=32.89  Aligned_cols=161  Identities=12%  Similarity=0.165  Sum_probs=86.6

Q ss_pred             eEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEE-------CCCCCEEEEEeCCC
Q 018675           24 VWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAW-------SPSGKLLATASFDA   96 (352)
Q Consensus        24 V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~-------s~~~~~l~s~~~d~   96 (352)
                      -..|+|.|.+.    +.++++....+.|++.|...+.. ..... ...........++|       +++|+.|.++...+
T Consensus       141 p~~la~dp~~~----~~Lyv~~~~~~~i~~ID~~~~~v-~~l~~-~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~  214 (496)
T 3kya_A          141 NGRLAFDPLNK----DHLYICYDGHKAIQLIDLKNRML-SSPLN-INTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD  214 (496)
T ss_dssp             EEEEEEETTEE----EEEEEEEETEEEEEEEETTTTEE-EEEEC-CTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred             CCEEEEccCCC----CEEEEEECCCCeEEEEECCCCEE-EEEEc-cCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence            45788888311    24455544446777788765432 11111 10111235789999       99999665555443


Q ss_pred             -c------EEEEEccC-Cceee---eEeeccccCCeeEEEECC-CCcEEEEeeCCCcEEEEecC-------CCCe-----
Q 018675           97 -T------TCIWEDVG-GDYEC---VATLEGHENEVKSVSWNA-SGTLLATCGRDKSVWIWEVM-------PGNE-----  152 (352)
Q Consensus        97 -~------i~i~~~~~-~~~~~---~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~v~vwd~~-------~~~~-----  152 (352)
                       .      +.+.+... +....   ...+... .....++.+| ++.++++-..++.|..+|+.       .+..     
T Consensus       215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~  293 (496)
T 3kya_A          215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV  293 (496)
T ss_dssp             TTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred             CCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence             2      44443222 12210   0111111 2345778899 55666666677889999986       3321     


Q ss_pred             ------eEEEEEeecCccCeeEEEEcCCCCEEE-EEeCCCcEEEEec
Q 018675          153 ------FECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWA  192 (352)
Q Consensus       153 ------~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~iw~~  192 (352)
                            ...+... +....-..++|+|++..|+ +-+....|+.++.
T Consensus       294 ~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          294 KNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             GGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence                  1122222 1223346899999999544 4455667777543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=85.11  E-value=24  Score=32.79  Aligned_cols=64  Identities=11%  Similarity=0.066  Sum_probs=37.8

Q ss_pred             EEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEE-EEECCCCCEEEEEe------CCCcEEEEEccCCce
Q 018675           42 FASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRS-CAWSPSGKLLATAS------FDATTCIWEDVGGDY  108 (352)
Q Consensus        42 l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~~------~d~~i~i~~~~~~~~  108 (352)
                      ++.++.|+.|.-+|..+++..|+....-.. ....+.+ -.+ .++. +++++      .++.+..+|..+++.
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~-~~~~~~ssP~v-~~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~  194 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIK-VGSTLTIAPYV-VKDK-VIIGSSGAELGVRGYLTAYDVKTGEQ  194 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEE-ETTE-EEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCC-ccceeecCCEE-ECCE-EEEEecccccCCCCeEEEEECCCCcE
Confidence            677788999999999999888875321100 0001111 001 1444 44443      378999999887753

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=84.72  E-value=26  Score=32.76  Aligned_cols=199  Identities=10%  Similarity=-0.011  Sum_probs=100.9

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCC-EEEEEeCCCcEE
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK-LLATASFDATTC   99 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~   99 (352)
                      .....+++|++.+     +.++.+=...+.|..+++......   ...+.. .-.....+++.+.++ +.++-...+.|.
T Consensus        39 ~~~~~~ld~~~~~-----~~ly~sD~~~~~I~r~~~~g~~~~---~~v~~~-~~~~P~GlAvD~~~~~ly~~d~~~~~I~  109 (619)
T 3s94_A           39 LEDAAAVDFVFSH-----GLIYWSDVSEEAIKRTEFNKTESV---QNVVVS-GLLSPDGLACDWLGEKLYWTDSETNRIE  109 (619)
T ss_dssp             CSCEEEEEEETTT-----TEEEEEETTTTEEEEEEC-----C---EEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceEEEEEEeCC-----CEEEEEECCCCeEEEEEccCCCce---EEEEeC-CCCCcCeEEEEecCCEEEEEeCCCCEEE
Confidence            3456688888754     345555445677777776543110   111111 113567899998555 555555678888


Q ss_pred             EEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC--CCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCE
Q 018675          100 IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR--DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV  177 (352)
Q Consensus       100 i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  177 (352)
                      +.+..+.....  .....-...+.|++.|.+..|+-+..  ...|...++. +.....+  ....-.....+++.+++..
T Consensus       110 v~~~dG~~~~~--l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l--~~~~~~~P~Glald~~~~~  184 (619)
T 3s94_A          110 VSNLDGSLRKV--LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFII--INSEIYWPNGLTLDYEEQK  184 (619)
T ss_dssp             EEETTSCSCEE--EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEE--ECSSCSSEEEEEEETTTTE
T ss_pred             EEECCCCCEEE--EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEE--EeCCCCCCcEEEEEccCCE
Confidence            88765543221  12233455788999886554444443  3455555543 2222211  1122334578899987665


Q ss_pred             EEEE-eCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          178 LFSC-SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       178 l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      |..+ ...+.|...+......      ..+......|   ..+|++..+ ..+.+-...+.|...|.
T Consensus       185 LY~aD~~~~~I~~~~~dG~~~------~~~~~~~~~~---P~gi~~~~~-~ly~td~~~~~V~~~d~  241 (619)
T 3s94_A          185 LYWADAKLNFIHKSNLDGTNR------QAVVKGSLPH---PFALTLFED-ILYWTDWSTHSILACNK  241 (619)
T ss_dssp             EEEEETTTCCEEEESSSCCEE------C------------CCCEEESSS-EEEEECTTTCSEEEEES
T ss_pred             EEEEeCCCCeEEEecCCCCcc------EEEEeCCCCC---ceEEEEeCC-EEEEecCCCCEEEEEEC
Confidence            5544 4456777776543211      1111101112   235666555 44445445566766664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=84.58  E-value=18  Score=30.94  Aligned_cols=104  Identities=12%  Similarity=0.096  Sum_probs=58.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeec---cccCCeeEEEECCC----CcEEEEeeC---C----Cc
Q 018675           76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE---GHENEVKSVSWNAS----GTLLATCGR---D----KS  141 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~---~h~~~v~~v~~~~~----~~~l~s~~~---d----~~  141 (352)
                      ....++|.|+|+++++ ..++.|.+++ ..+. ..+..+.   .-......++++|+    +.+.++-+.   +    ..
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            4578899999986655 5568898885 3443 3333221   12346789999997    444444432   3    55


Q ss_pred             EEEEecCCCC-e---eEEE-EEeec-CccCeeEEEEcCCCCEEEEEe
Q 018675          142 VWIWEVMPGN-E---FECV-SVLQG-HAQDVKMVQWHPTMDVLFSCS  182 (352)
Q Consensus       142 v~vwd~~~~~-~---~~~~-~~~~~-h~~~v~~~~~~~~~~~l~s~~  182 (352)
                      |..++..... .   .+.+ ..+.. .......+.|.|++.+.++.+
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            6666654321 1   1111 11221 111245789999998766644

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=83.20  E-value=20  Score=30.35  Aligned_cols=96  Identities=10%  Similarity=0.102  Sum_probs=46.4

Q ss_pred             cEEEEeeCC-CeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC-C---------CcEEEEEccCCce
Q 018675           40 PVFASCSGD-KTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF-D---------ATTCIWEDVGGDY  108 (352)
Q Consensus        40 ~~l~s~s~D-~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d---------~~i~i~~~~~~~~  108 (352)
                      .+++.||.+ ..+.++|..+....|.............-.++.+  ++++++.|+. +         +.+.+||..+..+
T Consensus        21 ~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           21 TVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             EEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             EEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            456666543 4677777764333354322111000011111222  5777777776 2         3577888777665


Q ss_pred             eeeEeec-cccCCeeEEEECCCCcEEEEeeCC
Q 018675          109 ECVATLE-GHENEVKSVSWNASGTLLATCGRD  139 (352)
Q Consensus       109 ~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d  139 (352)
                      ..+..+. .....-.++.  .++.+++.|+.+
T Consensus        99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             EECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             EECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            5443332 1111122222  456777777754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=81.77  E-value=29  Score=31.10  Aligned_cols=115  Identities=13%  Similarity=0.092  Sum_probs=60.8

Q ss_pred             CCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeEEEEEee---------cCccCeeEEEEcCC----CCEEEEEeC-
Q 018675          119 NEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQ---------GHAQDVKMVQWHPT----MDVLFSCSY-  183 (352)
Q Consensus       119 ~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~----~~~l~s~~~-  183 (352)
                      ...+.++|.|++. .++.+...|.|++++.........+..+.         ........++++|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3567899999986 44455678999998742111001111111         11345778999996    333333322 


Q ss_pred             -C----------CcEEEEecCCCCC-----CCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC
Q 018675          184 -D----------NTIKVWWAEDTDS-----DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD  235 (352)
Q Consensus       184 -d----------~~i~iw~~~~~~~-----~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d  235 (352)
                       +          ..|.-|.....+.     ...+.+..+......|.  -..|.|.|||.++++.+..
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECCT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCCC
Confidence             1          1333344432111     11223333322233453  5689999999988876654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=81.37  E-value=49  Score=33.57  Aligned_cols=194  Identities=14%  Similarity=0.158  Sum_probs=96.2

Q ss_pred             ccceEEEEEccCCCCCCCccEEEEeeC-CCeEEEEecCCCceeeeeeeeeec-ceecceEEEEECCCCCEEEEEeCCCcE
Q 018675           21 TDRVWSLAWKPTAGVDGVAPVFASCSG-DKTVRIWEQSASSRFWNCKAVLEE-MHTRTVRSCAWSPSGKLLATASFDATT   98 (352)
Q Consensus        21 ~~~V~~i~~~p~~~~~~~~~~l~s~s~-D~~v~~w~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i   98 (352)
                      .+.|.|+++.|........+++|.|.+ |++++|+++.+-.....  ..+.. .-...|.-+.+ ....+|..|-.||.+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~--~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l  629 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHK--EMLGGEIIPRSILMTTF-ESSHYLLCALGDGAL  629 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEE--EECCSSCCEEEEEEEEE-TTEEEEEEEETTSEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEE--EECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeE
Confidence            458999998874311112478999987 99999999975433211  11110 11223333344 234578889999987


Q ss_pred             EEEEc--cCCceeeeE-eeccccCCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeE-EEEcC
Q 018675           99 CIWED--VGGDYECVA-TLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM-VQWHP  173 (352)
Q Consensus        99 ~i~~~--~~~~~~~~~-~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~-~~~~~  173 (352)
                      .-+..  .++...-.. ..-| ..++.=..+...+. .++++| ++...++.-. ++ .. ...+  ....+.. ..|+.
T Consensus       630 ~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~-l~-~s~l--~~~~v~~~~~F~s  702 (1158)
T 3ei3_A          630 FYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HK-LV-FSNV--NLKEVNYMCPLNS  702 (1158)
T ss_dssp             EEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SS-EE-EEEB--SSSCCCEEEEECC
T ss_pred             EEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-Cc-eE-Eecc--ChHHhceEeccCc
Confidence            65543  333322211 1112 33454444433333 333333 4444444322 21 11 1111  1122333 24543


Q ss_pred             C--CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe
Q 018675          174 T--MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS  233 (352)
Q Consensus       174 ~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~  233 (352)
                      .  ...++.. .++.++|..+...  ..+ ..+++.     -+..+..++++|+.+.++.+.
T Consensus       703 e~~~~g~v~~-~~~~LrI~~i~~~--~~~-~~~~ip-----L~~Tprri~y~~~~~~~~v~~  755 (1158)
T 3ei3_A          703 DGYPDSLALA-NNSTLTIGTIDEI--QKL-HIRTVP-----LYESPRKICYQEVSQCFGVLS  755 (1158)
T ss_dssp             SSSTTEEEEE-CSSCEEEEEECCS--SSE-EEEEEE-----CSSEEEEEEEEGGGTEEEEEE
T ss_pred             ccCCCcEEEE-cCCceEEEEeccc--CCe-eEEEEe-----CCCCceEEEEcCCCCEEEEEE
Confidence            2  2344433 4566999876433  222 222221     235688899999877655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	352
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-25
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-23
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-19
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-16
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-15
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-11
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	7e-11
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-06
d1xfda1	465	b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-lik	3e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-04
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	7e-04
d1vfsa2	237	c.1.6.1 (A:13-249) Alanine racemase {Streptomyces	0.003

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (258), Expect = 1e-25
 Identities = 79/348 (22%), Positives = 138/348 (39%), Gaps = 28/348 (8%)

Query: 13  EIQTLEGHTDRVWSLAWKPT-----AGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA 67
           E+     HT  V  + +         G +    V+    G    R+ + SA+++      
Sbjct: 54  ELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113

Query: 68  VLEEM-HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW 126
                     +RS  +SP GK LAT + D    IW+    + + V  L+GHE ++ S+ +
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE--NRKIVMILQGHEQDIYSLDY 171

Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 186
             SG  L +   D++V IW++  G     +S+  G      +         + + S D  
Sbjct: 172 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT---VAVSPGDGKYIAAGSLDRA 228

Query: 187 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 246
           ++VW +E         + + +ES  GH  +++++ F   G  +VS S D ++K+W     
Sbjct: 229 VRVWDSET--GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 286

Query: 247 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP 305
             +S     +          H   + SV  ++    I SG+ D  V F+     D   G 
Sbjct: 287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW-----DKKSG- 340

Query: 306 SYKMLLKKEKAHDMDVNSVQWSPG-----ERRLLASASDDGMIKIWEL 348
                L   + H   V SV  + G     E  + A+ S D   +IW+ 
Sbjct: 341 ---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.9 bits (203), Expect = 3e-18
 Identities = 59/331 (17%), Positives = 117/331 (35%), Gaps = 40/331 (12%)

Query: 40  PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTC 99
           P       +    ++  +             + HT  V    +S  G+ LAT   + TT 
Sbjct: 29  PDALKKQTNDYYILYNPALPREIDVELHKSLD-HTSVVCCVKFSNDGEYLATGC-NKTTQ 86

Query: 100 IW----------------EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVW 143
           ++                 +   +    ++    +  ++SV ++  G  LAT   D+ + 
Sbjct: 87  VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 146

Query: 144 IWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCV 203
           IW++      + V +LQGH QD+  + + P+ D L S S D T+++W            +
Sbjct: 147 IWDIEN---RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI 203

Query: 204 QTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTI 263
                                 G  + + S D  +++W       ++G            
Sbjct: 204 ---------EDGVTTVAVSPGDGKYIAAGSLDRAVRVW-----DSETGFLVERLDSENES 249

Query: 264 SGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLI---DGPSYKMLLKKEKAHDM 319
              H  +++SV ++R+G  + SG+ D SV+ +     +       P+          H  
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309

Query: 320 DVNSVQWSPGERRLLASASDDGMIKIWELAN 350
            V SV  +  +   + S S D  +  W+  +
Sbjct: 310 FVLSVATTQNDE-YILSGSKDRGVLFWDKKS 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.1 bits (180), Expect = 3e-15
 Identities = 39/287 (13%), Positives = 75/287 (26%), Gaps = 60/287 (20%)

Query: 6   DGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNC 65
           + + E     +       + S+ + P                                  
Sbjct: 106 NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD 165

Query: 66  KAVLEEMHTRTVRSCA-------------------------------WSPSGKLLATASF 94
              L+   +                                          GK +A  S 
Sbjct: 166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 225

Query: 95  DATTCIWEDVGGDYEC-----VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP 149
           D    +W+   G           +  GH++ V SV +   G  + +   D+SV +W +  
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285

Query: 150 GNE---------FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW 200
            N            C     GH   V  V      + + S S D  +  W     D  + 
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW-----DKKSG 340

Query: 201 HCVQTISESNNGHSSTIWAL------SFNAKGDKLVSCSDDLTIKIW 241
           + +  +     GH +++ ++      S   + +   + S D   +IW
Sbjct: 341 NPLLMLQ----GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 12  REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWE 55
             +  L+GH + V S+A    + +     VFA+ SGD   RIW+
Sbjct: 341 NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.4 bits (246), Expect = 2e-24
 Identities = 88/348 (25%), Positives = 140/348 (40%), Gaps = 50/348 (14%)

Query: 12  REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE 71
            E   L GH   V  + + P         V  S S D T+++W+          K     
Sbjct: 8   PEKYALSGHRSPVTRVIFHPV------FSVMVSASEDATIKVWDYETGDFERTLKG---- 57

Query: 72  MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 131
            HT +V+  ++  SGK    AS  A   I       +EC+ T+ GH++ V SVS   +G 
Sbjct: 58  -HTDSVQDISFDHSGK--LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 114

Query: 132 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 191
            + +  RDK++ +WEV       CV    GH + V+MV+ +    ++ SCS D T++VW 
Sbjct: 115 HIVSASRDKTIKMWEV---QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171

Query: 192 AEDTD--------SDNWHCVQTISESNNGHSSTIW---ALSFNAKGDKLVSCSDDLTIKI 240
               +             C+    ES+    S             G  L+S S D TIK+
Sbjct: 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231

Query: 241 WGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKD 299
           W             ++   L T+ G HD  +  V +   G  I S A D +++ +     
Sbjct: 232 W-----------DVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVW----- 274

Query: 300 DLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
           D  +       +K   AH+  V S+ +       + + S D  +K+WE
Sbjct: 275 DYKNK----RCMKTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.3 bits (230), Expect = 3e-22
 Identities = 66/280 (23%), Positives = 112/280 (40%), Gaps = 19/280 (6%)

Query: 73  HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 132
           H   V    + P   ++ +AS DAT  +W+   G  +   TL+GH + V+ +S++ SG  
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGK- 72

Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 192
                   +    ++     FEC+  + GH  +V  V   P  D + S S D TIK+W  
Sbjct: 73  --LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 252
                   +CV+T      GH   +  +  N  G  + SCS+D T+++W   +   +   
Sbjct: 131 -----QTGYCVKTF----TGHREWVRMVRPNQDGTLIASCSNDQTVRVW--VVATKECKA 179

Query: 253 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYK--ML 310
                RH+     +   + +S      G     +          S+D  I        M 
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 239

Query: 311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
           L     HD  V  V +  G  + + S +DD  +++W+  N
Sbjct: 240 LMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKN 278

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 97.5 bits (241), Expect = 1e-23
 Identities = 65/341 (19%), Positives = 120/341 (35%), Gaps = 43/341 (12%)

Query: 7   GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
           G  ++R  +TL GH  +++++ W         + +  S S D  + IW+   +++     
Sbjct: 41  GRIQMRTRRTLRGHLAKIYAMHWGTD------SRLLVSASQDGKLIIWDSYTTNKVHAI- 93

Query: 67  AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW 126
                + +  V +CA++PSG  +A    D    I+     +     + E   +       
Sbjct: 94  ----PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149

Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 186
                         +            +  +   GH  DV  +   P   +  S + D +
Sbjct: 150 RFLDDNQIVTSSGDTTCAL--WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS 207

Query: 187 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 246
            K+W     D     C QT      GH S I A+ F   G+   + SDD T +++     
Sbjct: 208 AKLW-----DVREGMCRQTF----TGHESDINAICFFPNGNAFATGSDDATCRLF----- 253

Query: 247 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP 305
                D  A    +          I SV +S+ G ++ +G  D +   +     D +   
Sbjct: 254 -----DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW-----DALKAD 303

Query: 306 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 346
                      HD  V+ +  +  +   +A+ S D  +KIW
Sbjct: 304 ----RAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.7 bits (161), Expect = 6e-13
 Identities = 46/279 (16%), Positives = 88/279 (31%), Gaps = 60/279 (21%)

Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 168
               TL GH  ++ ++ W     LL +  +D  + IW+    N    V  +   +  V  
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMT 102

Query: 169 VQWHPTMDVLFSCSYDNTIKVWWAED---------------------------------- 194
             + P+ + +     DN   ++  +                                   
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162

Query: 195 --TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 252
             T +         + +  GH+  + +LS        VS + D + K+W           
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-------- 214

Query: 253 GYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL 311
                    T +G H+  I ++ +   G   A+G+ D + + F    D  +   S+    
Sbjct: 215 ---EGMCRQTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN-- 268

Query: 312 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
                    + SV +S    RLL +  DD    +W+   
Sbjct: 269 -----IICGITSVSFSKSG-RLLLAGYDDFNCNVWDALK 301

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.1 bits (211), Expect = 2e-19
 Identities = 54/364 (14%), Positives = 111/364 (30%), Gaps = 42/364 (11%)

Query: 20  HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRS 79
             + +   AW             A C  +  V I+    S   W     L+E H   V  
Sbjct: 6   LVEPISCHAWNKDR------TQIAICPNNHEVHIY--EKSGNKWVQVHELKE-HNGQVTG 56

Query: 80  CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD 139
             W+P    + T   D    +W   G  ++    +       + V W  +    A     
Sbjct: 57  VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS 116

Query: 140 KSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD 198
           + + I      N+ + C  + +     V  + WHP   +L + S D   +++ A   + +
Sbjct: 117 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 176

Query: 199 ---------NWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
                    +      +   ++     +  + F+A G ++   S D T+ +  AD     
Sbjct: 177 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 236

Query: 250 SGDGYASWRHLCT---------ISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDD 300
           +     +   L            +G+    +   + S  G ++ G   D  +   +    
Sbjct: 237 ATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 296

Query: 301 -----------LIDGPSYKMLLKKEKAHDMDVNSVQWSPGER---RLLASASDDGMIKIW 346
                           S       +  H   V+ +    G +       +   DG + IW
Sbjct: 297 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

Query: 347 ELAN 350
           ++ +
Sbjct: 357 DVRS 360

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 10/121 (8%), Positives = 33/121 (27%), Gaps = 7/121 (5%)

Query: 160 QGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWA 219
               + +    W+     +  C  ++ + ++   +   + W  V  +      H+  +  
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIY---EKSGNKWVQVHELK----EHNGQVTG 56

Query: 220 LSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE 279
           + +    +++V+C  D    +W       +                +          S  
Sbjct: 57  VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS 116

Query: 280 G 280
            
Sbjct: 117 R 117

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 6e-16
 Identities = 47/338 (13%), Positives = 94/338 (27%), Gaps = 46/338 (13%)

Query: 12  REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE 71
           R+I TL  H + V ++                   G   V++W+ S          +   
Sbjct: 43  RQINTL-NHGEVVCAVTISNPTR-------HVYTGGKGCVKVWDISHPGNKSPVSQLDCL 94

Query: 72  MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 131
                +RSC   P G  L      +T  IW+         A L        +++ +    
Sbjct: 95  NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS---- 150

Query: 132 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 191
                              ++         +   V+  Q H         S D T     
Sbjct: 151 ---------PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201

Query: 192 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 251
             D    +W   +      +  +S I++L +   G+             W A      + 
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE-------------WLAVGMESSNV 248

Query: 252 DGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKML 310
           +     +        H+  + S+ ++  G    S   D+ +  +          P    +
Sbjct: 249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW--------RTPYGASI 300

Query: 311 LKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
              +      V S   S  + + + + S D    ++E+
Sbjct: 301 --FQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 3e-11
 Identities = 29/281 (10%), Positives = 64/281 (22%), Gaps = 37/281 (13%)

Query: 73  HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYE---CVATLEGHENEVKSVSWNAS 129
           H   V +   S   + + T        +W+      +           +N ++S      
Sbjct: 50  HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 130 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 189
           G  L   G   ++ IW++          +         +     +      CS  N    
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168

Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
                T    +      +   +  +                +   D T++ W     R  
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKL----------WTGGLDNTVRSWDLREGRQL 218

Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
               + S           +     +  S                              K 
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNV----------------------EVLHVNKP 256

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
              +   H+  V S++++   +    S   D ++  W    
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPY 296

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 9e-10
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 3/87 (3%)

Query: 62  FWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEV 121
                     +H   V S  ++  GK   +   D     W    G    +       + V
Sbjct: 253 VNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--ASIFQS-KESSSV 309

Query: 122 KSVSWNASGTLLATCGRDKSVWIWEVM 148
            S   +     + T   DK   ++EV+
Sbjct: 310 LSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (182), Expect = 8e-16
 Identities = 65/341 (19%), Positives = 114/341 (33%), Gaps = 48/341 (14%)

Query: 7   GNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCK 66
           G + L+ I      +  V+ L +              S   D T++IW+++       CK
Sbjct: 1   GRHSLQRIHCRSETSKGVYCLQYDDQ--------KIVSGLRDNTIKIWDKNT----LECK 48

Query: 67  AVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSW 126
            +L   HT +V    +     +  ++                  +   E   +   +   
Sbjct: 49  RILTG-HTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM 107

Query: 127 NASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 186
                   TC +D+S+ +W++    +     VL GH     +         + S S D T
Sbjct: 108 MV------TCSKDRSIAVWDMASPTDITLRRVLVGHRAA--VNVVDFDDKYIVSASGDRT 159

Query: 187 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 246
           IKVW     ++     V+T+    NGH   I  L +      +VS S D TI++W  +  
Sbjct: 160 IKVW-----NTSTCEFVRTL----NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG 208

Query: 247 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPS 306
                         C         +          I SGA D  ++ +          P+
Sbjct: 209 A-------------CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255

Query: 307 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE 347
             + L+    H   V  +Q+       + S+S D  I IW+
Sbjct: 256 GTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 46/285 (16%), Positives = 93/285 (32%), Gaps = 45/285 (15%)

Query: 69  LEEMHTRTVRS---CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS 125
           L+ +H R+  S          + + +   D T  IW+      EC   L GH   V  + 
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQ 62

Query: 126 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 185
           ++                   V   +      +         ++       ++ +CS D 
Sbjct: 63  YD-------ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDR 115

Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
           +I VW        +      I+               +     +VS S D TIK+W    
Sbjct: 116 SIAVW--------DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS- 166

Query: 246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGP 305
                     +   + T++G+           R+ ++ SG++D++++ +        D  
Sbjct: 167 ----------TCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIRLW--------DIE 206

Query: 306 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
               L    +  +     V+    + + + S + DG IK+W+L  
Sbjct: 207 CGACL----RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVA 247

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.3 bits (178), Expect = 3e-15
 Identities = 36/350 (10%), Positives = 90/350 (25%), Gaps = 35/350 (10%)

Query: 11  LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLE 70
           ++ +Q  +   D +  +   P+        +    S D ++ +++    ++  +    L 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSK------SLLLITSWDGSLTVYKFDIQAKNVDLLQSLR 54

Query: 71  EMHTRTVRSCAWSP-SGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 129
             +   +  C +   +   +   +        + +G       T       +  +     
Sbjct: 55  --YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGD 112

Query: 130 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM--DVLFSCSYDNTI 187
             L+A         I     G+    V  L  +   VK   +        L     ++ +
Sbjct: 113 DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQV 172

Query: 188 KVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT- 246
           + +                 E +              + +     S D  + +   D   
Sbjct: 173 QWF-----RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 247 --RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI-- 302
                S         L          + S+ +S                +    D +I  
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP----------RHKFLYTAGSDGIISC 277

Query: 303 -DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT 351
            +  + K +    K ++  V  +  S     +L  A+ D   K     + 
Sbjct: 278 WNLQTRKKIKNFAKFNEDSVVKIACSD---NILCLATSDDTFKTNAAIDQ 324

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 3e-09
 Identities = 22/309 (7%), Positives = 77/309 (24%), Gaps = 24/309 (7%)

Query: 6   DGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNC 65
           D   +  ++     +   +    +     +          +    +   +   S  F   
Sbjct: 41  DIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-----QIYVGTVQGEILKVDLIGSPSFQAL 95

Query: 66  KAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS 125
                 +    +                 +         G            + + K  +
Sbjct: 96  TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155

Query: 126 WNASGTLLATCGRDKSVWIWEVMPGNE-FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD 184
            + + + L     +  V  + +    +    +       Q   +       +     S D
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID 215

Query: 185 NTIKVWWAEDTD------SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTI 238
             + V + +D                 ++  +   +  + ++ F+ +   L +   D  I
Sbjct: 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII 275

Query: 239 KIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESK 298
             W              + + +   + +++ ++  +  S + I+    +DD+ +      
Sbjct: 276 SCWNLQ-----------TRKKIKNFAKFNEDSVVKIACS-DNILCLATSDDTFKTNAAID 323

Query: 299 DDLIDGPSY 307
             +    S 
Sbjct: 324 QTIELNASS 332

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 14/113 (12%), Positives = 27/113 (23%), Gaps = 18/113 (15%)

Query: 12  REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE 71
           R           V S+ + P            +   D  +  W      +  N       
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRH------KFLYTAGSDGIISCWNLQTRKKIKNFA----- 290

Query: 72  MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSV 124
                      + S  +L  A+ D T               T+E + + +  +
Sbjct: 291 -KFNEDSVVKIACSDNILCLATSDDTFKTNA------AIDQTIELNASSIYII 336

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 2e-13
 Identities = 43/259 (16%), Positives = 84/259 (32%), Gaps = 28/259 (10%)

Query: 110 CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG-NEFECVSVLQGHAQDVK- 167
                + H+ ++ SVS     +   +C  D  + +W+     NE                
Sbjct: 6   TANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 168 --------MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISE-SNNGHSSTIW 218
                   + +    + ++ + S+   +  +     D       + +    ++    + W
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 219 ALSFNAKGD-----KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISG------YH 267
           AL + A  D     +LV+     T  IW       +S     +W     + G        
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183

Query: 268 DRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWS 327
            +   SV  S  G+IA+G  + +VQ    S    +     +        +   + SV++S
Sbjct: 184 SQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQH---SMINNSNSIRSVKFS 240

Query: 328 PGERRLLASASDDGMIKIW 346
           P +  LLA A D       
Sbjct: 241 P-QGSLLAIAHDSNSFGCI 258

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (156), Expect = 3e-12
 Identities = 48/353 (13%), Positives = 98/353 (27%), Gaps = 55/353 (15%)

Query: 14  IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE-- 71
               + H   ++S++               SCSGD  +++W+                  
Sbjct: 7   ANAGKAHDADIFSVSACN--------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV 58

Query: 72  -----MHTRTVRSCAW-SPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVS 125
                 H   +++    +    L+AT SF      +     D                  
Sbjct: 59  HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE-------------TKKV 105

Query: 126 WNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 185
                 LL +  +  S W  +    N+      L           W           +  
Sbjct: 106 IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK----------FHP 155

Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
                 +   +      +Q   ES    S    ++  + +G  + +  ++ T++I     
Sbjct: 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS---- 210

Query: 246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGP 305
               S                +  +I SV +S +G + + A D +    +   +      
Sbjct: 211 --ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 268

Query: 306 SYKM--------LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
              +            E AH   V S+ ++     L  SA  DG ++ W++  
Sbjct: 269 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-CSAGWDGKLRFWDVKT 320

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 5e-09
 Identities = 44/297 (14%), Positives = 94/297 (31%), Gaps = 46/297 (15%)

Query: 13  EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWE-------------QSAS 59
           ++   +      W+L W  +     ++    +     T  IW+               + 
Sbjct: 111 DLLDSDMKKHSFWALKWGAS-NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 169

Query: 60  SRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE----DVGGDYECVATLE 115
           +             ++   S   S  G L+AT   + T  I E        ++E   ++ 
Sbjct: 170 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMI 228

Query: 116 GHENEVKSVSWNASGTLLATCGRDKSVWIWEV-------------MPGNEFECVSVLQGH 162
            + N ++SV ++  G+LLA      S     +             +P +  +       H
Sbjct: 229 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 288

Query: 163 AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSF 222
           +  V  + ++ + + L S  +D  ++ W     D      + T++   +        L+ 
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFW-----DVKTKERITTLNMHCDDIEIEEDILAV 343

Query: 223 NAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE 279
           +  GD L          ++     +     G  +  +        DR+I    W RE
Sbjct: 344 DEHGDSLAEPG------VFDVKFLKKGWRSGMGADLNESLCCVCLDRSI---RWFRE 391

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 9e-13
 Identities = 60/341 (17%), Positives = 123/341 (36%), Gaps = 56/341 (16%)

Query: 10  ELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL 69
           EL+  + L+GH D V +        +        S S D T+++W          C   L
Sbjct: 5   ELKSPKVLKGHDDHVITC-------LQFCGNRIVSGSDDNTLKVWSAVT----GKCLRTL 53

Query: 70  EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 129
              HT  V S     +  +  +          E     +        + +       +  
Sbjct: 54  VG-HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTL------YGHTSTVRCMHLH 106

Query: 130 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 189
              + +  RD ++ +W++  G     +           +         + S +YD  +KV
Sbjct: 107 EKRVVSGSRDATLRVWDIETGQCLHVL-----MGHVAAVRCVQYDGRRVVSGAYDFMVKV 161

Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
           W     D +   C+ T+     GH++ +++L F+  G  +VS S D +I++W  +     
Sbjct: 162 W-----DPETETCLHTLQ----GHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGN-- 208

Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
                      C  +    +++ S    ++ I+ SG AD +V+ +               
Sbjct: 209 -----------CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW---------DIKTGQ 248

Query: 310 LLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
            L+  +  +   ++V      +  + ++SDDG +K+W+L  
Sbjct: 249 CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 289

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 9e-12
 Identities = 57/341 (16%), Positives = 111/341 (32%), Gaps = 54/341 (15%)

Query: 12  REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE 71
           + ++TL GHT  VWS   +                        +++           +  
Sbjct: 48  KCLRTLVGHTGGVWSSQMRDNI---------------IISGSTDRTLKVWNAETGECIHT 92

Query: 72  MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 131
           ++  T          K + + S DAT  +W+   G    V       +          G 
Sbjct: 93  LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL----MGHVAAVRCVQYDGR 148

Query: 132 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 191
            + +   D  V +W+        C+  LQGH   V  +Q+      + S S D +I+VW 
Sbjct: 149 RVVSGAYDFMVKVWDP---ETETCLHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRVW- 202

Query: 192 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 251
               D +  +C+ T      GH S    +      + LVS + D T+KIW          
Sbjct: 203 ----DVETGNCIHT----LTGHQSLTSGMELK--DNILVSGNADSTVKIW---------- 242

Query: 252 DGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL 311
           D                ++  +     +  + + + D +V+ +     + I      ++ 
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI----RNLVT 298

Query: 312 KKEKAHDMDVNSVQWSPGERRLLASASDDG----MIKIWEL 348
            +       V  ++ S   + + A  S +G     + + + 
Sbjct: 299 LESGGSGGVVWRIRASNT-KLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 1e-10
 Identities = 32/257 (12%), Positives = 74/257 (28%), Gaps = 30/257 (11%)

Query: 106 GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 165
           G+ +    L+GH++ V +      G  + +   D ++ +W  + G   +C+  L GH   
Sbjct: 4   GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTG---KCLRTLVGHTGG 59

Query: 166 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWAL----- 220
           V   Q    + +  S      +      +     +    T+   +      +        
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119

Query: 221 -----SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA---SWRHLCTISGYHDRTIF 272
                        L+     +    +        + D             +      T  
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179

Query: 273 SVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGER 331
                 +G  + SG+ D S++ +                +     H    + ++      
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVW---------DVETGNCIHTLTGHQSLTSGMELKD--- 227

Query: 332 RLLASASDDGMIKIWEL 348
            +L S + D  +KIW++
Sbjct: 228 NILVSGNADSTVKIWDI 244

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.0 bits (156), Expect = 2e-12
 Identities = 37/335 (11%), Positives = 88/335 (26%), Gaps = 54/335 (16%)

Query: 12  REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE 71
             ++T+ GH   + +L   P            S S D  +  W  S+            +
Sbjct: 4   EVLKTISGHNKGITALTVNP----------LISGSYDGRIMEWSSSSM----------HQ 43

Query: 72  MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 131
            H+  + S   S + +  + +  D                     + +   +V  N    
Sbjct: 44  DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDL 103

Query: 132 LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW 191
           L+        +                           + +     +        + +  
Sbjct: 104 LILQSFTGDIIKSV------------------------RLNSPGSAVSLSQNYVAVGLEE 139

Query: 192 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG 251
                      ++   +      +    +S +     + +      I ++      +++ 
Sbjct: 140 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS 199

Query: 252 DGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLL 311
                   +  IS        +     E ++A+G+ D ++  +               ++
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY--------SVKRPMKII 251

Query: 312 KKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 346
           K   AH   VN++ W       L S+  D  IK W
Sbjct: 252 KALNAHKDGVNNLLWETPST--LVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 5e-07
 Identities = 27/258 (10%), Positives = 65/258 (25%), Gaps = 25/258 (9%)

Query: 106 GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 165
           G  E + T+ GH   + +++ N     L +   D  +  W           S+ Q H+  
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSS--------SSMHQDHSNL 48

Query: 166 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK 225
           +  +      +       D        +             ++      +    L     
Sbjct: 49  IVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 108

Query: 226 GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASG 285
               +  S  L        +++     G      +           F +        +  
Sbjct: 109 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 168

Query: 286 AADDSV-------------QFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR 332
           +   S               + ++S++      +++       +             E  
Sbjct: 169 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 228

Query: 333 LLASASDDGMIKIWELAN 350
           L+A+ S D  I I+ +  
Sbjct: 229 LVATGSLDTNIFIYSVKR 246

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 9e-07
 Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 2/129 (1%)

Query: 20  HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRS 79
              +   ++  P+        V              +++   F   K            +
Sbjct: 161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA 220

Query: 80  CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD 139
                   L+AT S D    I+  V    + +  L  H++ V ++ W    T L + G D
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIY-SVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD 278

Query: 140 KSVWIWEVM 148
             +  W V+
Sbjct: 279 ACIKRWNVV 287

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.3 bits (152), Expect = 8e-12
 Identities = 34/323 (10%), Positives = 87/323 (26%), Gaps = 27/323 (8%)

Query: 43  ASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE 102
           A  +      + +  A         V+  +    + +   +  G  +A AS   +     
Sbjct: 22  AHFAAVTQQFVIDGEAGR-------VIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARG 74

Query: 103 DVGG--------DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWE---VMPGN 151
           +                A +E  +     V      T L   G+    + +     +   
Sbjct: 75  ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 134

Query: 152 EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNN 211
           + E  +  +          +    D  F    D ++         +      +       
Sbjct: 135 DLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP--- 191

Query: 212 GHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI 271
                I   +++ K  +LV  +    I          +      +        G+     
Sbjct: 192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 251

Query: 272 FSVHWSREGIIASGAADDSVQFFVESKDD---LIDGPSYKMLLKKEKAHDMDVNSVQWSP 328
             V + R         D   ++  ++      ++D  + + L   +     +++S+  S 
Sbjct: 252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL--AKFEMGHEIDSINVSQ 309

Query: 329 -GERRLLASASDDGMIKIWELAN 350
             +  L A ++ D  + I +  +
Sbjct: 310 DEKPLLYALSTGDKTLYIHDAES 332

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.6 bits (150), Expect = 1e-11
 Identities = 48/363 (13%), Positives = 107/363 (29%), Gaps = 45/363 (12%)

Query: 13  EIQTLEGHTDRVWS-LAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEE 71
           +  TL GH   V + L ++             + + DK +R+++                
Sbjct: 4   QRTTLRGHMTSVITCLQFEDN--------YVITGADDKMIRVYDSINKKFLLQLSG---- 51

Query: 72  MHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT 131
            H   V +  ++  G +L + S D T  +W+   G    V            +    +  
Sbjct: 52  -HDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 109

Query: 132 LLATCGRDKSVWIWEVMPGNE---------FECVSVLQGHAQDVKMVQWHPTMDVLFSCS 182
            + T  RD ++ +W++   +          +  V            V       V     
Sbjct: 110 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 169

Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIK--- 239
           + N +     ++T               +GH+  I++  ++ +  + +S S D TI+   
Sbjct: 170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 229

Query: 240 -------------IWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGA 286
                             + R+      ++           +       +    + A   
Sbjct: 230 LENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT 289

Query: 287 ADDSVQFFVESKDDLI---DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMI 343
              S    V   ++     +  S K++          + SV +    + L+A+   DG  
Sbjct: 290 FYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQS 347

Query: 344 KIW 346
            + 
Sbjct: 348 FLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 5e-09
 Identities = 40/308 (12%), Positives = 90/308 (29%), Gaps = 36/308 (11%)

Query: 73  HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 132
           H  +V +C        + T + D    +++ +    + +  L GH+  V ++ +   G L
Sbjct: 11  HMTSVITC-LQFEDNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHGGIL 67

Query: 133 LATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 192
           +   G          +       V            +  +  +  + + S DNT+ VW  
Sbjct: 68  V--SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 193 EDTDS------------DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKI 240
               S                  +                + +  G+ +VS S D T+ +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 241 WGADITRMQS---------GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSV 291
           W     +                        IS   D TI         ++ +     ++
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 292 QFFVESKDDLIDGPSYKMLLKKEKAHDM---------DVNSVQWSPGERRLLASASDDGM 342
              +   D  +   +    ++   A+D          +++++        +L S S +  
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQ 304

Query: 343 IKIWELAN 350
             I+ L +
Sbjct: 305 FNIYNLRS 312

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 10/106 (9%), Positives = 31/106 (29%), Gaps = 9/106 (8%)

Query: 141 SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNW 200
           +     +   +  +       H  ++  +      D +     +N   ++     +  + 
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIY-----NLRSG 313

Query: 201 HCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 246
             V          +  IW+++F  K   + +   D    +   D +
Sbjct: 314 KLVHANIL---KDADQIWSVNFKGKT-LVAAVEKDGQSFLEILDFS 355

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 62.2 bits (149), Expect = 2e-11
 Identities = 29/338 (8%), Positives = 68/338 (20%), Gaps = 38/338 (11%)

Query: 19  GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR 78
               R+  +        D              + I++          KA   E +   V 
Sbjct: 40  PEPLRIRYVRRGG----DTKVAFIHGTREGDFLGIYDYR------TGKAEKFEENLGNVF 89

Query: 79  SCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR 138
           +     +GK       +    I        +        E  +   + + +   +A    
Sbjct: 90  AMGVDRNGKF--AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP 147

Query: 139 DKSVWIWEVMPGN------EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWA 192
            K       +         E   +              +      L+  SY +       
Sbjct: 148 LKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 207

Query: 193 EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGD 252
              +       +           +        +     +        +            
Sbjct: 208 VVLNFSFEVVSKPFVIP--LIPGSPNPTKLVPRSMTSEAGE----YDLNDMYKRSSPINV 261

Query: 253 GYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLK 312
               +R +  +                     GA +  V    + K             +
Sbjct: 262 DPGDYRMIIPLES-SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT------------R 308

Query: 313 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
           K      ++  ++ S   + +     DDG I  + L  
Sbjct: 309 KVTEVKNNLTDLRLSADRKTV-MVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 9/146 (6%), Positives = 28/146 (19%), Gaps = 10/146 (6%)

Query: 13  EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEM 72
           +   +             P +          +    ++  I       R         E 
Sbjct: 219 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPL----ES 274

Query: 73  HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL 132
                              A        ++           +   +N +  +  +A    
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR------KVTEVKNNLTDLRLSADRKT 328

Query: 133 LATCGRDKSVWIWEVMPGNEFECVSV 158
           +     D  ++ + +    +   V  
Sbjct: 329 VMVRKDDGKIYTFPLEKPEDERTVET 354

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.9 bits (148), Expect = 2e-11
 Identities = 34/334 (10%), Positives = 81/334 (24%), Gaps = 35/334 (10%)

Query: 23  RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAW 82
               L++ PT          A   G     +                    +  V +  +
Sbjct: 19  FTTHLSYDPTT------NAIAYPCGKSAF-VRCLDDGDSKVPPVVQFTGHGSSVVTTVKF 71

Query: 83  SP--SGKLLATASFDATTCIWEDVGGDYECV------ATLEGHENEVKSVSWNASGTLLA 134
           SP    + L +        +W                +  +     +  +SW+  G  L 
Sbjct: 72  SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 131

Query: 135 TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 194
             G  +  +   +   +      V     +               +   D ++  +    
Sbjct: 132 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ--- 188

Query: 195 TDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGY 254
                         +++   S +  + F+    + V               +        
Sbjct: 189 ---GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF----- 240

Query: 255 ASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKE 314
              +++          IF++ W      A+  AD +++ +     D+      +      
Sbjct: 241 --LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW-----DVTTSKCVQKW--TL 291

Query: 315 KAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
               +    V         + S S DG +  +EL
Sbjct: 292 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (120), Expect = 8e-08
 Identities = 28/224 (12%), Positives = 57/224 (25%), Gaps = 14/224 (6%)

Query: 19  GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR 78
                +  ++W      +G          D               +   V          
Sbjct: 113 VLAGPISDISWDF----EGRRLCVVGEGRDNFGVFISW---DSGNSLGEVSGHSQRINAC 165

Query: 79  SCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS-GTLLATCG 137
               S   + +      +                T     + V+ V ++   G  + T G
Sbjct: 166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 225

Query: 138 RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDS 197
            D+ +  ++   G   + +   Q   Q               +   D TI+VW     D 
Sbjct: 226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW-----DV 280

Query: 198 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
               CVQ  +       +    +       +++S S D T+  +
Sbjct: 281 TTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 3e-07
 Identities = 29/284 (10%), Positives = 60/284 (21%), Gaps = 29/284 (10%)

Query: 76  TVRSCAWSPSGKLLATASFDATT-CIWEDVGGDYECVATLEGHE-NEVKSVSW--NASGT 131
                ++ P+   +A     +      +D       V    GH  + V +V +       
Sbjct: 19  FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78

Query: 132 LLATCGRDKSVWIWEVMPGNEFECV-----SVLQGHAQDVKMVQWHPTMDVLFSCSYDNT 186
            L +      V +W      E   V     S  Q  A  +  + W      L        
Sbjct: 79  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138

Query: 187 IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT 246
               +      ++   V   S+  N           +       S           +   
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198

Query: 247 RMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPS 306
           R     G        +                                            
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI--------------------SCFDGKSG 238

Query: 307 YKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
             +   ++    +       S  + +  A+   D  I++W++  
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 282

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 19/161 (11%), Positives = 41/161 (25%), Gaps = 4/161 (2%)

Query: 119 NEVKSVSWNASGTLLATC-GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD- 176
           N    +S++ +   +A   G+   V   +         V      +  V  V++ P    
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 177 -VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD 235
             L S      + VW     D ++      +       +  I  +S++ +G +L    + 
Sbjct: 78  QYLCSGDESGKVIVWGWT-FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136

Query: 236 LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW 276
                         S    +                     
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 60.2 bits (144), Expect = 7e-11
 Identities = 25/310 (8%), Positives = 66/310 (21%), Gaps = 12/310 (3%)

Query: 41  VFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCI 100
           V+ +    + + +W  +                   V+    SP  + L          +
Sbjct: 6   VYIASPESQQIHVWNLNHEGAL---TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVL 62

Query: 101 WEDVGGDYEC--VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSV 158
              +  D      A        +  +S +  G  +     +        +       V  
Sbjct: 63  AYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD 122

Query: 159 LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW 218
           +             P    L+  +        +    D            +  G      
Sbjct: 123 VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 182

Query: 219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR 278
               N +    V+  +  ++ +W                      S         +    
Sbjct: 183 VFHPNEQYAYCVNELNS-SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 241

Query: 279 EGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS 338
             + A       +  F       +      +  +  +  +            + L+A+  
Sbjct: 242 RHLYACDRTASLITVFS------VSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ 295

Query: 339 DDGMIKIWEL 348
               I ++E+
Sbjct: 296 KSHHISVYEI 305

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 59.6 bits (143), Expect = 2e-10
 Identities = 46/339 (13%), Positives = 99/339 (29%), Gaps = 26/339 (7%)

Query: 24  VWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHT-RTVRSCAW 82
                 K    +D       +      + + +  +       K +++ + T   V     
Sbjct: 17  PEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDS-------KKIVKVIDTGYAVHISRM 69

Query: 83  SPSGKLLATASFDATTCIWEDVGGDYECVATLE---GHENEVKSVSWNASGT-LLATCGR 138
           S SG+ L     DA   + +    +   VA ++      +   S          +A    
Sbjct: 70  SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW 129

Query: 139 DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDS 197
                I +   G   E   ++      V    +HP   V     S+++   +   ++T  
Sbjct: 130 PPQFAIMD---GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 186

Query: 198 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASW 257
                 + I   +N   ++I A  F A G    S    +T       +  + S D   S 
Sbjct: 187 VLLVNYKDI---DNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 243

Query: 258 RHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH 317
                 + +  R    VH     + ++    D     + +        ++K  + + +  
Sbjct: 244 LVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK-KVAELQGQ 302

Query: 318 DMDVNSVQWSPGERRLLA------SASDDGMIKIWELAN 350
                 ++  P    L         A     + +++L N
Sbjct: 303 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 341

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.5 bits (139), Expect = 3e-10
 Identities = 43/335 (12%), Positives = 86/335 (25%), Gaps = 42/335 (12%)

Query: 14  IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMH 73
            Q   GH   + +L+               S   +  +  W+ S          V  ++H
Sbjct: 5   DQVRYGHNKAITALSSSADG------KTLFSADAEGHINSWDIST----GISNRVFPDVH 54

Query: 74  TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL 133
              +     +  G L   +  D    +     G     A      ++   ++ +      
Sbjct: 55  ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS------ 108

Query: 134 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAE 193
                D +V                    + +   V        +     D+ + V+   
Sbjct: 109 --ADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLS 166

Query: 194 DTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDG 253
                    +   +E  +   S   A                       +      S   
Sbjct: 167 GASVSEVKTIVHPAEITSVAFSNNGAFLVA----------------TDQSRKVIPYSVAN 210

Query: 254 YASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKK 313
                H  + + +  +            +A+G+ D+SV  +       ++ PS   ++ K
Sbjct: 211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN------MNKPSDHPIIIK 264

Query: 314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL 348
                  VNSV W       + SA  D  IK W +
Sbjct: 265 GAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 4e-07
 Identities = 28/255 (10%), Positives = 63/255 (24%), Gaps = 15/255 (5%)

Query: 109 ECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM 168
                  GH   + ++S +A G  L +   +  +  W++  G           HA  +  
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP--DVHATMITG 60

Query: 169 VQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK 228
           ++     D+      D+   V         +      +S    G + +       A   K
Sbjct: 61  IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 229 LVSCSDDLTIKIWGAD-------------ITRMQSGDGYASWRHLCTISGYHDRTIFSVH 275
            ++      +                      +   D       L   S    +TI    
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 276 WSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA 335
                  ++  A                  ++++             +      +   LA
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 336 SASDDGMIKIWELAN 350
           + S D  + +W +  
Sbjct: 241 TGSLDNSVIVWNMNK 255

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.3 bits (137), Expect = 9e-10
 Identities = 32/342 (9%), Positives = 78/342 (22%), Gaps = 36/342 (10%)

Query: 28  AWKPTAGVDG-VAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSG 86
           +     G     + +        T   W   A          L       +       SG
Sbjct: 22  SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCG-----VTLGHSLGAFLSLAVAGHSG 76

Query: 87  KLLATAS-----------------FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNAS 129
              A AS                 FD  T +        +      G    +     +++
Sbjct: 77  SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136

Query: 130 GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKV 189
             LL       +     V         S  Q                  +  S   ++  
Sbjct: 137 -CLLFFLFGSSAAAGLSV------PGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAA 189

Query: 190 WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ 249
                  +         ++     + +  A   N  G  + + +  +      A    M+
Sbjct: 190 SDLAAAPAAAGI---VGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMK 246

Query: 250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKM 309
           +                    + +   + +GI+                   +     + 
Sbjct: 247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT 306

Query: 310 LLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELAN 350
                 ++  D +++  +  G     A+++   ++ I++ A+
Sbjct: 307 S--GPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.7 bits (130), Expect = 4e-09
 Identities = 22/320 (6%), Positives = 64/320 (20%), Gaps = 19/320 (5%)

Query: 41  VFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK-LLATASFDATTC 99
                +    + + + ++                    +   +P  +      +      
Sbjct: 10  YMIVTNYPNNLHVVDVAS----DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 65

Query: 100 IWE----DVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC 155
             +             +        + S + +  G  +              +       
Sbjct: 66  GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLE 125

Query: 156 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSS 215
           V        + K V+  P    ++     +   ++ A              + +    + 
Sbjct: 126 VFSTADG-LEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW 184

Query: 216 TIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTI------SGYHDR 269
                S           S      +              A+   L         +G    
Sbjct: 185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT 244

Query: 270 TIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG 329
             F+              D +  + V ++    D    K++  K    D     V +   
Sbjct: 245 QEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLI--KAANLDHTYYCVAFDKK 302

Query: 330 ERRLLASASDDGMIKIWELA 349
             + L        + ++   
Sbjct: 303 GDK-LYLGGTFNDLAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.0 bits (123), Expect = 4e-08
 Identities = 10/283 (3%), Positives = 56/283 (19%), Gaps = 17/283 (6%)

Query: 81  AWSPSGKLLATASFDATTCIWEDVGGDYECVATLE-GHENEVKSVSWNASG-TLLATCGR 138
           A     + +   ++     + +          +     +    +        T       
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 139 DKSVWIWEVMPGNEFECVSVLQ---GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 195
              ++  ++         ++        + +      P    +++               
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 196 -------DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRM 248
                   + +    + +          +   + +            + +K     +   
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALP 180

Query: 249 QSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKD-DLIDGPSY 307
                   +     +  +  ++          I                     +D  + 
Sbjct: 181 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 240

Query: 308 KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
           K   ++         +   SP +   +    +   +  ++L  
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR--LAKYDLKQ 281

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.8 bits (112), Expect = 9e-07
 Identities = 16/224 (7%), Positives = 51/224 (22%), Gaps = 16/224 (7%)

Query: 124 VSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCS 182
            +  A    +       ++ + +V     ++   +              P     +   +
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNN 59

Query: 183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG 242
           +   I      D D+        +S        ++++ + +  G ++ +  +        
Sbjct: 60  HYGDIYGI---DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116

Query: 243 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLI 302
             +              + + +   +            +    AADD   +        +
Sbjct: 117 YVVKPP--------RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM 168

Query: 303 DGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIW 346
           D  + K                  +P         S      + 
Sbjct: 169 DVKTGKYT--VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 17/205 (8%), Positives = 42/205 (20%), Gaps = 12/205 (5%)

Query: 19  GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVR 78
                ++                  +       R    +    ++          +    
Sbjct: 153 ADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT 212

Query: 79  SCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR 138
              +    +  ATA          D+                  +   +           
Sbjct: 213 IARFKDDKQDPATADLLYGYLSV-DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL 271

Query: 139 DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD 198
           +  +  +++      +  +           V +    D L+     N + V+     + D
Sbjct: 272 N-RLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVF-----NPD 321

Query: 199 NWHCVQTISESNNGHSSTIWALSFN 223
               V+ I     G  ST     F 
Sbjct: 322 TLEKVKNIKLP-GGDMSTTTPQVFI 345

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 30/321 (9%), Positives = 66/321 (20%), Gaps = 26/321 (8%)

Query: 42  FASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGK-LLATASFDATTCI 100
             + +    + + +    +               T      +P G+   AT +   +   
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITI---ADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 101 WEDVGG---DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC-- 155
            + V G       ++T E     +   + +  G  LA       + +             
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 156 ------VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES 209
                         + + M+ W      L+    D  +               V+     
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE-------AGTLVEDKPIQ 173

Query: 210 NNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR 269
           +    +               S            DI              +   +G    
Sbjct: 174 SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233

Query: 270 TIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG 329
               +        A   A     F   +  +  D      +  K         SV  S  
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRA-FGAYNVLESFDLEKNASI--KRVPLPHSYYSVNVSTD 290

Query: 330 ERRLLASASDDGMIKIWELAN 350
               +      G +  ++   
Sbjct: 291 GST-VWLGGALGDLAAYDAET 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 5e-07
 Identities = 29/290 (10%), Positives = 66/290 (22%), Gaps = 22/290 (7%)

Query: 16  TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTR 75
           T+             P     G    +A+ +  +++   +               E   +
Sbjct: 28  TIADAGPTPMVPMVAP----GG-RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82

Query: 76  TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYEC---------VATLEGHENEVKSVSW 126
           ++   A SP GK LA         +                            ++  ++W
Sbjct: 83  SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAW 142

Query: 127 NASGTLLATCGRDKSVWIWEV-MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDN 185
              G+ L   GRD  V   E      +    S          ++      +     +   
Sbjct: 143 ARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPF 202

Query: 186 TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI 245
                  +  D   +       +   G  +       +                     +
Sbjct: 203 YTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVL 262

Query: 246 TRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFF 294
                         +  +      + +SV+ S +G  +  G A   +  +
Sbjct: 263 ESFD----LEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAY 306

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.7 bits (119), Expect = 9e-08
 Identities = 36/307 (11%), Positives = 79/307 (25%), Gaps = 28/307 (9%)

Query: 42  FASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIW 101
              C+G  +V      +         +  E H+        SPSG   A+        IW
Sbjct: 32  IQYCNGT-SVYTVPVGSL----TDTEIYTE-HSHQTTVAKTSPSGYYCASGDVHGNVRIW 85

Query: 102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQG 161
           +     +    T+      VK +SW++    +A  G  +  +    +        ++   
Sbjct: 86  DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ 145

Query: 162 HAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALS 221
                 +         + S S DNT+ ++        +     T    +  ++       
Sbjct: 146 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS--- 202

Query: 222 FNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGI 281
                                     +                 +               
Sbjct: 203 ----------LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252

Query: 282 IASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG 341
           IAS +AD +++ +        +  + K+         ++   +      ++ L S S +G
Sbjct: 253 IASASADKTIKIW--------NVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANG 303

Query: 342 MIKIWEL 348
            I     
Sbjct: 304 FINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 30/275 (10%), Positives = 62/275 (22%), Gaps = 24/275 (8%)

Query: 76  TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLAT 135
           T      +P+G  +   +   +                   H ++      + SG   A+
Sbjct: 19  TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL--TDTEIYTEHSHQTTVAKTSPSGYYCAS 75

Query: 136 CGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDT 195
                +V IW+          ++    +  VK + W      + +               
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 134

Query: 196 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA 255
              +   +   + + N                     S      +   +    +    + 
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPS--------RPFRIISGSDDNTVAIFEGPPFKFKSTFG 186

Query: 256 SWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEK 315
                     Y+           +G I      D  +  V                  + 
Sbjct: 187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV------------FEDDSLKN 234

Query: 316 AHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
                         +   +ASAS D  IKIW +A 
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 269

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 44/285 (15%), Positives = 81/285 (28%), Gaps = 25/285 (8%)

Query: 11  LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLE 70
           L + +    H+ +       P+          AS      VRIW+ + ++          
Sbjct: 48  LTDTEIYTEHSHQTTVAKTSPS------GYYCASGDVHGNVRIWDTTQTTHILKTT---I 98

Query: 71  EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASG 130
            + +  V+  +W    K +A             +         L G    + SV +  S 
Sbjct: 99  PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR 158

Query: 131 TLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
                 G D +       P  +F+                   ++               
Sbjct: 159 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI----V 214

Query: 191 WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS 250
                D       +  S  N  HS +++ L+++  G K+ S S D TIKIW         
Sbjct: 215 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV------- 267

Query: 251 GDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFF 294
               A+ +   TI          +        + S +A+  + F 
Sbjct: 268 ----ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 8/97 (8%)

Query: 148 MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTIS 207
             G   +       H+  V  + W P    + S S D TIK+W     +       +TI 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW-----NVATLKVEKTI- 276

Query: 208 ESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGAD 244
               G       L        LVS S +  I     +
Sbjct: 277 --PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (111), Expect = 2e-06
 Identities = 46/360 (12%), Positives = 90/360 (25%), Gaps = 50/360 (13%)

Query: 24  VWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRT-VRSCAW 82
                 +     D       +      + + + S          +   + T   V     
Sbjct: 17  PEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGST-------YEIKTVLDTGYAVHISRL 69

Query: 83  SPSGKLLATASFDATTCIWEDVGGDYECVATL---EGHENEVKSVSWNASG-TLLATCGR 138
           S SG+ L     D    + +    +   VA +       +   S          +A    
Sbjct: 70  SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW 129

Query: 139 DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDT-- 195
                I +   G   E   +           ++HP   V     S+     +   ++T  
Sbjct: 130 PPQYVIMD---GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 186

Query: 196 ----DSDNWHCVQTISESN-------NGHSSTIWALSFNAKGDKLVSCSDDLTIKIW--- 241
               D  + + ++T   S            S  + ++     +KLV         +    
Sbjct: 187 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 246

Query: 242 ----------GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDS 290
                     GA+      G  +A+  H+   S     T    H      I+ S  A   
Sbjct: 247 TGGQTPHPGRGANFVHPTFGPVWATS-HMGDDSVALIGTDPEGHPDNAWKILDSFPALGG 305

Query: 291 VQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
              F+++  +      Y  +            SV     +   +     D   K   +A 
Sbjct: 306 GSLFIKTHPNSQ----YLYVDATLNPEAEISGSVAVFDIKA--MTGDGSDPEFKTLPIAE 359

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 465

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 43/355 (12%), Positives = 104/355 (29%), Gaps = 23/355 (6%)

Query: 8   NYELREIQTLEGHTDRVWSLAW----KPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFW 63
           + + + +   E    ++    W    +    +      + +  G + +R+         +
Sbjct: 100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIY 159

Query: 64  NCKA--VLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEV 121
           N  +  + EE   +T  +  WSP G  LA A+ + +     ++      +       +  
Sbjct: 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219

Query: 122 KSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC 181
           K+ S N S +L        +  +  + P +        +     + MV+W  +  V  + 
Sbjct: 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDD-------PRMREYYITMVKWATSTKVAVTW 272

Query: 182 SYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW 241
             +    V      D+    C +   + +             +K  +       +     
Sbjct: 273 L-NRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331

Query: 242 G----ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVES 297
           G      ++  Q      + + + T   +    I +       I      D   +  + S
Sbjct: 332 GKFYHITVSSSQPNSSNDNIQSI-TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390

Query: 298 KDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDG--MIKIWELAN 350
            +    G   +  L  +   +    S  +S      L      G  M+ +    +
Sbjct: 391 AN--TVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTD 443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 23/272 (8%), Positives = 54/272 (19%), Gaps = 15/272 (5%)

Query: 91  TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMP 149
             S      + +      +  AT+    N       +  GT +         V I +   
Sbjct: 7   ANSESDNISVIDVTSN--KVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

Query: 150 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW-WAEDTDSDNWHCVQTISE 208
            N    V                       + S  + I                   ++ 
Sbjct: 64  NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123

Query: 209 SNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHD 268
           S +G    +                  +     G     +               S    
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183

Query: 269 RTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKML----------LKKEKAHD 318
                 +   + +    A          +K  + +   Y             +       
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243

Query: 319 MDVNSVQWSPGERRLLASASDDGMIKIWELAN 350
            D   +  +P  +++  + S    + + + A 
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 38.5 bits (88), Expect = 7e-04
 Identities = 22/204 (10%), Positives = 58/204 (28%), Gaps = 9/204 (4%)

Query: 77  VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATC 136
           + + A +P G +  T              G+ +  AT+EG  +    +++ ++G L+AT 
Sbjct: 30  LENLASAPDGTIFVTNHEVGEIVSI-TPDGNQQIHATVEGKVS---GLAFTSNGDLVATG 85

Query: 137 GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTD 196
               S+ +  ++  +      +    A  +  +          +                
Sbjct: 86  WNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQP 144

Query: 197 SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYAS 256
           S +      +   +N  S    A      G+ L    +   + +    +           
Sbjct: 145 SGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVS-NTEKMLLLRIPVDSTDKPGEPEI 203

Query: 257 WRHLCTISGY---HDRTIFSVHWS 277
           +     I  +    +  ++     
Sbjct: 204 FVEQTNIDDFAFDVEGNLYGATHI 227

>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Length = 237

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Alanine racemase
species: Streptomyces lavendulae [TaxId: 1914]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 22/191 (11%), Positives = 42/191 (21%), Gaps = 11/191 (5%)

Query: 106 GDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQD 165
           G   C    +         +       L   G    +  W   PG  +     ++     
Sbjct: 33  GAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRIMCWLWTPGGPWREA--IETDIDV 90

Query: 166 VKMVQWHPTMDVLFSCSYDNTIKVWWAEDT---------DSDNWHCVQTISESNNGHSST 216
                W        + +   T ++    DT                   ++    G    
Sbjct: 91  SVSGMWALDEVRAAARAAGRTARIQLKADTGLGRNGCQPADWAELVGAAVAAQAEGTVQV 150

Query: 217 IWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW 276
               S  A  D+    S  L +  +   +   +        RH+                
Sbjct: 151 TGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETHFDL 210

Query: 277 SREGIIASGAA 287
            R G+   G +
Sbjct: 211 VRTGLAVYGVS 221

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.73
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.7
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.69
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.69
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.53
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.53
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.39
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.38
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.35
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.3
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.03
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.02
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.85
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.8
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.76
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.69
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.59
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.59
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.54
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.42
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.38
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.37
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.31
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.23
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.17
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.16
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.89
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.81
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.4
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.37
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.97
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.82
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.76
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	93.17
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.99
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	90.56
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.17

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-42  Score=300.26  Aligned_cols=294  Identities=17%  Similarity=0.272  Sum_probs=237.3

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      .+.+.++ +|.+.|+|++|+|+      +++||||+ ||+|+|||+................|...|.+++|+|++++|+
T Consensus        42 ~~~~~~~-~H~~~V~~v~fs~~------g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~  113 (337)
T d1gxra_          42 ARQINTL-NHGEVVCAVTISNP------TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLI  113 (337)
T ss_dssp             EEEEEEE-CCSSCCCEEEECSS------SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEE
T ss_pred             ceEEEEC-CCCCcEEEEEECCC------CCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEE
Confidence            4556666 79999999999997      58999987 8999999987654321112222245888999999999999999


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      +|+.|++|++||...........+..|...+.++.|+|++..+++++.|+.+++|++...   .+.....+|...+.+++
T Consensus       114 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~---~~~~~~~~~~~~v~~l~  190 (337)
T d1gxra_         114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCID  190 (337)
T ss_dssp             EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEE
T ss_pred             Eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccc
Confidence            999999999999876555566777889999999999999999999999999999998754   34556678899999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          171 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      |++++..+++++.|+.+++|++...     ..+...     .|...|.+++|+|++++|++++.|+.+++||++..... 
T Consensus       191 ~s~~~~~~~~~~~d~~v~i~d~~~~-----~~~~~~-----~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-  259 (337)
T d1gxra_         191 ISNDGTKLWTGGLDNTVRSWDLREG-----RQLQQH-----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-  259 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTT-----EEEEEE-----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-
T ss_pred             ccccccccccccccccccccccccc-----eeeccc-----ccccceEEEEEcccccccceeccccccccccccccccc-
Confidence            9999999999999999999987543     223332     36788999999999999999999999999998643211 


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCC
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG  329 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~  329 (352)
                                  ....|...+.++.|++++ ++++++.|+.+++|+.....        . +. ...|...|++++|+|+
T Consensus       260 ------------~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~--------~-~~-~~~~~~~v~~~~~s~d  317 (337)
T d1gxra_         260 ------------QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--------S-IF-QSKESSSVLSCDISVD  317 (337)
T ss_dssp             ------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------E-EE-EEECSSCEEEEEECTT
T ss_pred             ------------cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC--------E-EE-EccCCCCEEEEEEeCC
Confidence                        112467789999999876 89999999999999765321        1 11 2357889999999999


Q ss_pred             CcceEEEecCCCeEEEEeec
Q 018675          330 ERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       330 ~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ++ +|+||+.||+|+|||+-
T Consensus       318 ~~-~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         318 DK-YIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             SC-EEEEEETTSCEEEEEEE
T ss_pred             CC-EEEEEeCCCeEEEEEEE
Confidence            86 68899999999999973

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.3e-40  Score=292.26  Aligned_cols=310  Identities=25%  Similarity=0.356  Sum_probs=225.7

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeee-------------eeecceecceEEEEE
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA-------------VLEEMHTRTVRSCAW   82 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~-------------~~~~~h~~~v~~~~~   82 (352)
                      ...+|++.|+|++|+|+      +++||||+ |++|+||++.++........             .....|...|++++|
T Consensus        57 ~~~~H~~~V~~l~fs~d------g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  129 (388)
T d1erja_          57 KSLDHTSVVCCVKFSND------GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF  129 (388)
T ss_dssp             EEEECSSCCCEEEECTT------SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE
T ss_pred             eeCCCCCcEEEEEECCC------CCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEE
Confidence            33479999999999997      57899986 89999999987654322211             011246778999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecC
Q 018675           83 SPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGH  162 (352)
Q Consensus        83 s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h  162 (352)
                      +|++++|++|+.|+.|++|+...+  .......+|...|.++.|++++..+++++.++.+++||.....   .......+
T Consensus       130 s~~~~~l~s~~~dg~v~i~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~  204 (388)
T d1erja_         130 SPDGKFLATGAEDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---CSLTLSIE  204 (388)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEECS
T ss_pred             CCCCCcceeccccccccccccccc--ccccccccccccccccccccccccccccccceeeeeeeccccc---cccccccc
Confidence            999999999999999999998766  3456678899999999999999999999999999999986543   23333444


Q ss_pred             ccCeeEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          163 AQDVKMVQWHP-TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIW  241 (352)
Q Consensus       163 ~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iw  241 (352)
                      . ...++.++| ++.+|++++.|+.|++|+......  ............+|...|.+++|+|++++|++++.||.|++|
T Consensus       205 ~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iw  281 (388)
T d1erja_         205 D-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW  281 (388)
T ss_dssp             S-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             c-ccccccccCCCCCeEEEEcCCCeEEEeecccCcc--ceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEE
Confidence            4 445555554 778999999999999998764321  111111122335788999999999999999999999999999


Q ss_pred             cCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcc
Q 018675          242 GADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMD  320 (352)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  320 (352)
                      |++......................|...+.++++++++ ++++|+.|+.|++|+....         ..+....+|.+.
T Consensus       282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---------~~~~~l~~H~~~  352 (388)
T d1erja_         282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---------NPLLMLQGHRNS  352 (388)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---------CEEEEEECCSSC
T ss_pred             eccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC---------cEEEEEeCCCCC
Confidence            986432211110000011112223467889999999876 8999999999999976432         234456789999


Q ss_pred             eeEEEe------cCCCcceEEEecCCCeEEEEeecc
Q 018675          321 VNSVQW------SPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       321 i~~~~~------sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      |+++++      +|++. +|+|||.||+|+||++++
T Consensus       353 V~~~~~~~~~~~spd~~-~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         353 VISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             EEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEE
T ss_pred             EEEEEEecCcccCCCCC-EEEEEeCCCEEEEEeeee
Confidence            999975      56764 789999999999999964

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-39  Score=289.00  Aligned_cols=310  Identities=17%  Similarity=0.304  Sum_probs=230.9

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEE
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTC   99 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~   99 (352)
                      +.++|+|++|+|+      +.+||+|+.|+.|+||+..+++.  .....+ ..|.++|++++|+|++++|++|+.|++++
T Consensus         6 ~~~pIt~~~~s~d------g~~la~~~~~~~i~iw~~~~~~~--~~~~~l-~gH~~~V~~l~fsp~~~~l~s~s~D~~i~   76 (371)
T d1k8kc_           6 LVEPISCHAWNKD------RTQIAICPNNHEVHIYEKSGNKW--VQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAY   76 (371)
T ss_dssp             CSSCCCEEEECTT------SSEEEEECSSSEEEEEEEETTEE--EEEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             CCCCeEEEEECCC------CCEEEEEeCCCEEEEEECCCCCE--EEEEEe-cCCCCCEEEEEECCCCCEEEEEECCCeEE
Confidence            3478999999997      57999999999999999876532  122222 45899999999999999999999999999


Q ss_pred             EEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCee-EEEEEeecCccCeeEEEEcCCCCEE
Q 018675          100 IWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF-ECVSVLQGHAQDVKMVQWHPTMDVL  178 (352)
Q Consensus       100 i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l  178 (352)
                      +|+..++...+...+.+|...|++++|+|+++.|++++.|+++++|++...... ........|...|.+++|+|++.+|
T Consensus        77 vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l  156 (371)
T d1k8kc_          77 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL  156 (371)
T ss_dssp             EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred             EEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccce
Confidence            999887776667777889999999999999999999999999999998654432 2334456788899999999999999


Q ss_pred             EEEeCCCcEEEEecCCCCCCCcee---------EeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccc
Q 018675          179 FSCSYDNTIKVWWAEDTDSDNWHC---------VQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ  249 (352)
Q Consensus       179 ~s~~~d~~i~iw~~~~~~~~~~~~---------~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  249 (352)
                      ++|+.|+.+++|+...........         .........+|...|.+++|+|++++|++++.|+.|++||+....  
T Consensus       157 ~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--  234 (371)
T d1k8kc_         157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM--  234 (371)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT--
T ss_pred             eccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccc--
Confidence            999999999999875432211000         001112234688899999999999999999999999999975321  


Q ss_pred             cCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCC--cc-----ccCcc----------------
Q 018675          250 SGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKD--DL-----IDGPS----------------  306 (352)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~--~~-----~~~~~----------------  306 (352)
                               ....+. .+...+.++.|++++.+++++.|+.+.+|.....  .+     .+.+.                
T Consensus       235 ---------~~~~~~-~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (371)
T d1k8kc_         235 ---------AVATLA-SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL  304 (371)
T ss_dssp             ---------EEEEEE-CSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHC
T ss_pred             ---------ceeeee-cccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecc
Confidence                     222222 3567799999999887666667777666543211  00     00000                


Q ss_pred             ---------cceeeecccccCcceeEEEecCCCc---ceEEEecCCCeEEEEeecc
Q 018675          307 ---------YKMLLKKEKAHDMDVNSVQWSPGER---RLLASASDDGMIKIWELAN  350 (352)
Q Consensus       307 ---------~~~~~~~~~~h~~~i~~~~~sp~~~---~~l~s~~~Dg~i~iw~~~~  350 (352)
                               ..........|.+.|+++++.|.+.   ..|+|+|.||.|+||++..
T Consensus       305 ~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         305 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                     0000111235999999999977542   2488999999999999853

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.7e-39  Score=275.53  Aligned_cols=287  Identities=30%  Similarity=0.515  Sum_probs=234.6

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS   93 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~   93 (352)
                      ..+|+||++.|++++|+|+      +++|||||.|++|+||++.+++...    .+ ..|...|.+++|+|++.+++++.
T Consensus        10 ~~~L~GH~~~I~~l~~sp~------~~~l~s~s~Dg~i~iWd~~~~~~~~----~~-~~h~~~V~~~~~~~~~~~~~~~~   78 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPV------FSVMVSASEDATIKVWDYETGDFER----TL-KGHTDSVQDISFDHSGKLLASCS   78 (317)
T ss_dssp             SCEEECCSSCEEEEEECSS------SSEEEEEESSSCEEEEETTTCCCCE----EE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEcCCCCCeEEEEEcCC------CCEEEEEeCCCeEEEEECCCCCEEE----EE-eCCCCcEEEEeeecccccccccc
Confidence            4579999999999999997      5799999999999999998765322    22 35889999999999999999999


Q ss_pred             CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcC
Q 018675           94 FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus        94 ~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                      .++.+.+|+.....  ....+.+|...+.++.|+|+++.+++++.|+.+++||+..+.   ....+.+|...+.+++|+|
T Consensus        79 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  153 (317)
T d1vyhc1          79 ADMTIKLWDFQGFE--CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY---CVKTFTGHREWVRMVRPNQ  153 (317)
T ss_dssp             TTSCCCEEETTSSC--EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECT
T ss_pred             cccccccccccccc--cccccccccccceeeeccCCCceEEeeccCcceeEeecccce---eeeEEccCCCcceeeeccc
Confidence            99999999876553  345567889999999999999999999999999999997654   3566788999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC--------------------CEEEEEe
Q 018675          174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG--------------------DKLVSCS  233 (352)
Q Consensus       174 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~--------------------~~l~s~~  233 (352)
                      ++.++++++.|+.+++|+.....     ....+    .+|...+.++.|+|++                    .++++++
T Consensus       154 ~~~~l~~~~~d~~v~~~~~~~~~-----~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (317)
T d1vyhc1         154 DGTLIASCSNDQTVRVWVVATKE-----CKAEL----REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  224 (317)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCC-----EEEEE----CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeeccce-----eeEEE----ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc
Confidence            99999999999999999875432     22222    2566778888877653                    4789999


Q ss_pred             CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeee
Q 018675          234 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLK  312 (352)
Q Consensus       234 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~  312 (352)
                      .|+.|++|+.+..           .....+. .|...+.++.+++++ ++++++.|+.+++|+....         +++.
T Consensus       225 ~d~~i~~~~~~~~-----------~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---------~~~~  283 (317)
T d1vyhc1         225 RDKTIKMWDVSTG-----------MCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---------RCMK  283 (317)
T ss_dssp             TTSEEEEEETTTT-----------EEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---------CCCE
T ss_pred             CCCEEEEEECCCC-----------cEEEEEe-CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC---------cEEE
Confidence            9999999987532           2223333 367789999999876 7899999999999965432         2334


Q ss_pred             cccccCcceeEEEecCCCcceEEEecCCCeEEEEe
Q 018675          313 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       313 ~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      ...+|...|++++|+|+++ +|+||+.||+|+|||
T Consensus       284 ~~~~h~~~V~~~~~s~~~~-~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         284 TLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECCSSCEEEEEECSSSS-CEEEEETTSEEEEEC
T ss_pred             EEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEeC
Confidence            5678999999999999986 688999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.5e-37  Score=266.48  Aligned_cols=294  Identities=23%  Similarity=0.425  Sum_probs=230.0

Q ss_pred             cceeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCE
Q 018675            9 YELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKL   88 (352)
Q Consensus         9 ~~~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~   88 (352)
                      ..++...+|+||.+.|++++|+|+      +++|||||.||+|+|||..++.....    + ..|..+|.+++|+|++++
T Consensus        43 ~~~~~~~tL~GH~~~I~~l~~s~~------~~~l~sgs~Dg~v~iWd~~~~~~~~~----~-~~~~~~v~~v~~~~~~~~  111 (340)
T d1tbga_          43 IQMRTRRTLRGHLAKIYAMHWGTD------SRLLVSASQDGKLIIWDSYTTNKVHA----I-PLRSSWVMTCAYAPSGNY  111 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECTT------SSEEEEEETTTEEEEEETTTTEEEEE----E-ECSCSCEEEEEECTTSSE
T ss_pred             cceeeeEEECCCCCCEEEEEECCC------CCEEEEEECCCceeeeecccceeEEE----E-ecccccEEeeEeecccee
Confidence            345677889999999999999997      57999999999999999987753322    2 348889999999999999


Q ss_pred             EEEEeCCCcEEEEEccCCc--eeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCe
Q 018675           89 LATASFDATTCIWEDVGGD--YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDV  166 (352)
Q Consensus        89 l~s~~~d~~i~i~~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v  166 (352)
                      +++|+.|+.+.+|+.....  ......+.+|........... +..+.....|.....+......   .......+...+
T Consensus       112 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  187 (340)
T d1tbga_         112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQ---QTTTFTGHTGDV  187 (340)
T ss_dssp             EEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTE---EEEEEECCSSCE
T ss_pred             eeeecccceeecccccccccccccceeccccccccccccccc-cccccccccccccccccccccc---ccccccccceeE
Confidence            9999999999999865432  233445667777666555444 4567788888989888865432   233445566788


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          167 KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      ....+.+...++++++.|+.+++|++...     .....+    .+|...|.+++|+|++++|++|+.||.|++|+++..
T Consensus       188 ~~~~~~~~~~~~~~~~~d~~v~i~d~~~~-----~~~~~~----~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         188 MSLSLAPDTRLFVSGACDASAKLWDVREG-----MCRQTF----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTT-----EEEEEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             eeeccccccceeEEeecCceEEEEECCCC-----cEEEEE----eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence            88999999999999999999999987543     233333    368899999999999999999999999999997632


Q ss_pred             ccccCCCCccceeeEEe-ecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEE
Q 018675          247 RMQSGDGYASWRHLCTI-SGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSV  324 (352)
Q Consensus       247 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  324 (352)
                      ..           ...+ ...+...+.++.+++++ ++++|+.|+.+++|+....         ..+....+|...|+++
T Consensus       259 ~~-----------~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~H~~~V~~l  318 (340)
T d1tbga_         259 QE-----------LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCL  318 (340)
T ss_dssp             EE-----------EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEE
T ss_pred             cc-----------ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC---------cEEEEEcCCCCCEEEE
Confidence            21           1111 12345668899999876 7899999999999976432         2345567899999999


Q ss_pred             EecCCCcceEEEecCCCeEEEEe
Q 018675          325 QWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       325 ~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      +|+|+++ +|+|||.||+|+|||
T Consensus       319 ~~s~d~~-~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         319 GVTDDGM-AVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECTTSS-CEEEEETTSCEEEEC
T ss_pred             EEeCCCC-EEEEEccCCEEEEeC
Confidence            9999986 688999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5e-37  Score=263.58  Aligned_cols=294  Identities=18%  Similarity=0.240  Sum_probs=216.7

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      +..+++.||.+.|++++|+|+      +++|+|||.|++|++||+.+++.    ...+...|...|++++|+|++++ ++
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~d------g~~l~s~s~Dg~v~vWd~~~~~~----~~~~~~~h~~~v~~v~~~~~g~~-~~   71 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSAD------GKTLFSADAEGHINSWDISTGIS----NRVFPDVHATMITGIKTTSKGDL-FT   71 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTCCE----EECSSCSCSSCEEEEEECTTSCE-EE
T ss_pred             ccceEcCCCCCCcEEEEECCC------CCEEEEEcCCCeEEEEECCCCcE----EEEEcCCCCCcEEEEEeecccee-ec
Confidence            456789999999999999997      57999999999999999987643    23334568899999999999975 45


Q ss_pred             EeCCCcEEEEEccCCcee-eeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           92 ASFDATTCIWEDVGGDYE-CVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      ++.|+.+++|+....... .......+...+.+++|+|++..+++++ ++.+.+|+...     .....  ....+.+++
T Consensus        72 ~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~-----~~~~~--~~~~~~~~~  143 (299)
T d1nr0a2          72 VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK-----LTEVP--ISYNSSCVA  143 (299)
T ss_dssp             EETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE-----EEEEE--CSSCEEEEE
T ss_pred             ccceeeEEEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc-----ccccc--ccccccccc
Confidence            678999999986543211 1122345677899999999998776655 56799998531     12222  234578899


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          171 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      |+|++.++++++.|+.+++|++....   .....     ...|...|.+++|+|++.+|++++.|+.|++||+.......
T Consensus       144 ~s~~~~~l~~g~~dg~i~~~d~~~~~---~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         144 LSNDKQFVAVGGQDSKVHVYKLSGAS---VSEVK-----TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             ECTTSCEEEEEETTSEEEEEEEETTE---EEEEE-----EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred             cccccccccccccccccccccccccc---ccccc-----ccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999875431   11111     12578899999999999999999999999999875332111


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCC
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG  329 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~  329 (352)
                      .        ... ...|...+.+++|++++ ++++++.|+.+++|+......      .........+...|+.+.|.+ 
T Consensus       216 ~--------~~~-~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~------~~~~~~~~~~~~~v~~~~~~~-  279 (299)
T d1nr0a2         216 H--------TNS-WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD------HPIIIKGAHAMSSVNSVIWLN-  279 (299)
T ss_dssp             C--------CCC-CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS------CCEEETTSSTTSCEEEEEEEE-
T ss_pred             c--------ccc-ccccccccccccccccccceEEEcCCCEEEEEECCCCCc------ceEEEecCCCCCcEEEEEECC-
Confidence            0        001 12367789999999876 799999999999997653211      112222334556777777755 


Q ss_pred             CcceEEEecCCCeEEEEeec
Q 018675          330 ERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       330 ~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ++ +|+|+|.||+|+|||+.
T Consensus       280 ~~-~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         280 ET-TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TT-EEEEEETTSCEEEEECC
T ss_pred             CC-EEEEEeCCCEEEEEecc
Confidence            44 57899999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.2e-36  Score=259.83  Aligned_cols=290  Identities=19%  Similarity=0.286  Sum_probs=217.8

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcE
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATT   98 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i   98 (352)
                      .+.+.+..++++|+      ++.||.++ ++.+.+|++.+....    ..+ ..|...|++++|+|+|++||+|+.|++|
T Consensus        15 ~~r~~~~~~a~~~~------g~~l~~~~-~~~v~i~~~~~~~~~----~~~-~~H~~~v~~~~~sp~g~~latg~~dg~i   82 (311)
T d1nr0a1          15 TARGTAVVLGNTPA------GDKIQYCN-GTSVYTVPVGSLTDT----EIY-TEHSHQTTVAKTSPSGYYCASGDVHGNV   82 (311)
T ss_dssp             CCTTCCCCCEECTT------SSEEEEEE-TTEEEEEETTCSSCC----EEE-CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCCCCeEEEEEcCC------CCEEEEEe-CCEEEEEECCCCcee----EEE-cCCCCCEEEEEEeCCCCeEeccccCceE
Confidence            35556667888987      46788874 667999999765321    222 4589999999999999999999999999


Q ss_pred             EEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC--CCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC
Q 018675           99 CIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR--DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD  176 (352)
Q Consensus        99 ~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  176 (352)
                      ++|+...+.......+.+|.+.|.+++|+|++++|++++.  +..+++|++..+..   ...+.+|...|.+++|+|+++
T Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~---~~~l~~h~~~v~~v~~~~~~~  159 (311)
T d1nr0a1          83 RIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS---NGNLTGQARAMNSVDFKPSRP  159 (311)
T ss_dssp             EEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB---CBCCCCCSSCEEEEEECSSSS
T ss_pred             eeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccc---cccccccccccccccccccce
Confidence            9999877665555667889999999999999999999886  45699999876543   345778999999999999987


Q ss_pred             E-EEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCc
Q 018675          177 V-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA  255 (352)
Q Consensus       177 ~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  255 (352)
                      + +++|+.|+.|++|++...     .....+    .+|..+|+++.|+|+++++++++.||.|++||.............
T Consensus       160 ~~l~sgs~d~~i~i~d~~~~-----~~~~~~----~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~  230 (311)
T d1nr0a1         160 FRIISGSDDNTVAIFEGPPF-----KFKSTF----GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD  230 (311)
T ss_dssp             CEEEEEETTSCEEEEETTTB-----EEEEEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT
T ss_pred             eeeccccccccccccccccc-----cccccc----ccccccccccccCcccccccccccccccccccccccccccccccc
Confidence            4 788999999999987542     222222    368899999999999999999999999999997643211000000


Q ss_pred             cceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeeccccc---CcceeEEEecCCCc
Q 018675          256 SWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAH---DMDVNSVQWSPGER  331 (352)
Q Consensus       256 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~i~~~~~sp~~~  331 (352)
                           ......|...|.+++|++++ ++++|+.|+.+++|+.....         ++.+...|   ...+.++.|++  .
T Consensus       231 -----~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~---------~~~~l~~~~~~~~~~~~~~~~~--~  294 (311)
T d1nr0a1         231 -----SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK---------VEKTIPVGTRIEDQQLGIIWTK--Q  294 (311)
T ss_dssp             -----TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------EEEEEECCSSGGGCEEEEEECS--S
T ss_pred             -----ccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc---------EEEEEECCCCccceEEEEEecC--C
Confidence                 00012366789999999865 89999999999999764322         22222222   33455666654  3


Q ss_pred             ceEEEecCCCeEEEEeec
Q 018675          332 RLLASASDDGMIKIWELA  349 (352)
Q Consensus       332 ~~l~s~~~Dg~i~iw~~~  349 (352)
                       .|++++.||.|++||.+
T Consensus       295 -~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         295 -ALVSISANGFINFVNPE  311 (311)
T ss_dssp             -CEEEEETTCCEEEEETT
T ss_pred             -EEEEEECCCEEEEEeCC
Confidence             46789999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-35  Score=255.25  Aligned_cols=253  Identities=21%  Similarity=0.319  Sum_probs=199.8

Q ss_pred             eeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE
Q 018675           13 EIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA   92 (352)
Q Consensus        13 ~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~   92 (352)
                      ....+.+|.+.|++++|+|+      +++||+|+.|++|++|++.........   ....|..+|.+++|+|++++|+++
T Consensus        50 ~~~~~~~H~~~v~~~~~sp~------g~~latg~~dg~i~iwd~~~~~~~~~~---~~~~~~~~v~~v~~s~d~~~l~~~  120 (311)
T d1nr0a1          50 DTEIYTEHSHQTTVAKTSPS------GYYCASGDVHGNVRIWDTTQTTHILKT---TIPVFSGPVKDISWDSESKRIAAV  120 (311)
T ss_dssp             CCEEECCCSSCEEEEEECTT------SSEEEEEETTSEEEEEESSSTTCCEEE---EEECSSSCEEEEEECTTSCEEEEE
T ss_pred             eeEEEcCCCCCEEEEEEeCC------CCeEeccccCceEeeeeeecccccccc---ccccccCccccccccccccccccc
Confidence            44567899999999999997      579999999999999999876543221   124578899999999999999999


Q ss_pred             eCC--CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCc-EEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEE
Q 018675           93 SFD--ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGT-LLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMV  169 (352)
Q Consensus        93 ~~d--~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~  169 (352)
                      +.+  ..+++|+..+++  ....+.+|.+.|++++|+|+++ .|++|+.|++|++||++..   +....+..|...|+++
T Consensus       121 ~~~~~~~~~v~~~~~~~--~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~---~~~~~~~~~~~~i~~v  195 (311)
T d1nr0a1         121 GEGRERFGHVFLFDTGT--SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSV  195 (311)
T ss_dssp             ECCSSCSEEEEETTTCC--BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB---EEEEEECCCSSCEEEE
T ss_pred             ccccccccccccccccc--ccccccccccccccccccccceeeeccccccccccccccccc---cccccccccccccccc
Confidence            864  568999987653  4567789999999999999987 4889999999999998654   4566778899999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeee---eccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcc
Q 018675          170 QWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI---SESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       170 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      .|+|+++++++++.|+.+++|+.....     ....+   .....+|...|.+++|+|++++|++|+.||.|+|||++..
T Consensus       196 ~~~p~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         196 RYNPDGSLFASTGGDGTIVLYNGVDGT-----KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCC-----EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ccCcccccccccccccccccccccccc-----ccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            999999999999999999999876532     12222   1234578999999999999999999999999999997633


Q ss_pred             ccccCCCCccceeeEEeecc--cCcceEEEEecCCceEEecCCCCeEEEEEc
Q 018675          247 RMQSGDGYASWRHLCTISGY--HDRTIFSVHWSREGIIASGAADDSVQFFVE  296 (352)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~  296 (352)
                      +.           ...+...  ....+.++.|+++ .+++++.||.+++|++
T Consensus       271 ~~-----------~~~l~~~~~~~~~~~~~~~~~~-~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         271 KV-----------EKTIPVGTRIEDQQLGIIWTKQ-ALVSISANGFINFVNP  310 (311)
T ss_dssp             EE-----------EEEEECCSSGGGCEEEEEECSS-CEEEEETTCCEEEEET
T ss_pred             cE-----------EEEEECCCCccceEEEEEecCC-EEEEEECCCEEEEEeC
Confidence            21           2222221  1234556777654 5788889999999964

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.3e-35  Score=258.63  Aligned_cols=260  Identities=19%  Similarity=0.336  Sum_probs=203.0

Q ss_pred             eecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe
Q 018675           73 HTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE  152 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~  152 (352)
                      ...+|+|++|+|||++||+|+.|+.|++|+..+++..++..+++|.++|++++|+|++++|++|+.|++|++||+... .
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~-~   84 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-T   84 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT-E
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc-c
Confidence            347899999999999999999999999999888777778889999999999999999999999999999999998654 3


Q ss_pred             eEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE
Q 018675          153 FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                      ......+.+|...+.+++|+|+++.+++++.|+.+++|+......  ..   .......+|...|.+++|+|++.+|++|
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~--~~---~~~~~~~~~~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--WW---VCKHIKKPIRSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--EE---EEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccccccccceeecccCcceeeeeecccc--cc---cccccccccccccccccccccccceecc
Confidence            344555678888999999999999999999999999998754321  11   1122334688999999999999999999


Q ss_pred             eCCCcEEEEcCCccccccCCCCccc------eeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCc
Q 018675          233 SDDLTIKIWGADITRMQSGDGYASW------RHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGP  305 (352)
Q Consensus       233 ~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~  305 (352)
                      +.|+++++|+..............+      .........|...+.+++|++++ ++++++.|+.+++|+....      
T Consensus       160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~------  233 (371)
T d1k8kc_         160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK------  233 (371)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT------
T ss_pred             ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc------
Confidence            9999999999764322111111100      01111223467789999999975 7899999999999976432      


Q ss_pred             ccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          306 SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       306 ~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                         ..+.....|..+|++++|+|+++ +|++ |.|+.+++|...
T Consensus       234 ---~~~~~~~~~~~~v~s~~fs~d~~-~la~-g~d~~~~~~~~~  272 (371)
T d1k8kc_         234 ---MAVATLASETLPLLAVTFITESS-LVAA-GHDCFPVLFTYD  272 (371)
T ss_dssp             ---TEEEEEECSSCCEEEEEEEETTE-EEEE-ETTSSCEEEEEE
T ss_pred             ---cceeeeecccccceeeeecCCCC-EEEE-EcCCceEEEEee
Confidence               22344567889999999999985 6665 558888887654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.3e-34  Score=247.24  Aligned_cols=288  Identities=19%  Similarity=0.290  Sum_probs=203.3

Q ss_pred             eeeeecCCccce-EEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           13 EIQTLEGHTDRV-WSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        13 ~~~~~~gH~~~V-~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      +..+|+||.+.| +|++++.        ++||||+.|++|+|||..+++.+.    .+ ..|.++|++++|+|+ ..|++
T Consensus         4 ~~~tL~GH~~~vitc~~~~~--------~~l~tgs~Dg~i~vWd~~~~~~~~----~l-~~H~~~V~~l~~s~~-~~l~s   69 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQFED--------NYVITGADDKMIRVYDSINKKFLL----QL-SGHDGGVWALKYAHG-GILVS   69 (355)
T ss_dssp             EEEEEECCSSSCEEEEEEET--------TEEEEEETTTEEEEEETTTTEEEE----EE-ECCSSCEEEEEEETT-TEEEE
T ss_pred             CcEEECCcCCCcEEEEEECC--------CEEEEEeCCCeEEEEECCCCcEEE----EE-ECCCCCEEEEEEcCC-CEEEE
Confidence            356899999886 6776643        589999999999999998765332    22 458999999999985 58999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCe-------------------
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNE-------------------  152 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~-------------------  152 (352)
                      |+.|+++++|+..............+........+.+++..+++++.|++|++||+.....                   
T Consensus        70 ~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (355)
T d1nexb2          70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  149 (355)
T ss_dssp             EETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTT
T ss_pred             EecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccc
Confidence            9999999999987654332222233333445566678888888889999999998743210                   


Q ss_pred             -----------------------------------------eEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 018675          153 -----------------------------------------FECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW  191 (352)
Q Consensus       153 -----------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~  191 (352)
                                                               ...+....++...+.++.++|++..+++++.|+.|++|+
T Consensus       150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  229 (355)
T d1nexb2         150 NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD  229 (355)
T ss_dssp             CTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             ccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeee
Confidence                                                     011222334556677888999999999999999999998


Q ss_pred             cCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcce
Q 018675          192 AEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI  271 (352)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  271 (352)
                      ....     .....+    .+|...|.++++++  ++|++++.||.|++||++....             .+.. |...+
T Consensus       230 ~~~~-----~~~~~~----~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~-------------~~~~-~~~~~  284 (355)
T d1nexb2         230 LENG-----ELMYTL----QGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR-------------KFSY-HHTNL  284 (355)
T ss_dssp             TTTC-----CEEEEE----CCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE-------------EEEE-ECTTC
T ss_pred             cccc-----cccccc----cccccccccccccc--ceeeeeecccccccccccccce-------------eccc-ccCCc
Confidence            7543     223333    37889999999874  6899999999999999753211             1111 12222


Q ss_pred             EE-EEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          272 FS-VHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       272 ~~-~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      .. ..+++++.+++++.|+.+++|+.....+        +.....+|...|++++|+|+  .++++++.||+++||-+.
T Consensus       285 ~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~--------~~~~~~~~~~~V~~v~~~~~--~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         285 SAITTFYVSDNILVSGSENQFNIYNLRSGKL--------VHANILKDADQIWSVNFKGK--TLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             CCCCEEEECSSEEEEEETTEEEEEETTTCCB--------CCSCTTTTCSEEEEEEEETT--EEEEEEESSSCEEEEEEE
T ss_pred             eEEEEEcCCCCEEEEEeCCEEEEEECCCCCE--------EEEEecCCCCCEEEEEEcCC--eEEEEEECCCcEEEEEEe
Confidence            22 2345556555566799999997654322        11235679999999999985  478899999997777654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-33  Score=236.39  Aligned_cols=271  Identities=17%  Similarity=0.228  Sum_probs=200.8

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      +++.+|+||.+.|++++|+|          |+|||.||+|++|+..+.          ...|...|.++++++++ .+++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----------l~sgs~Dg~v~~Wd~~~~----------~~~h~~~V~~~~~~~~~-~~~s   62 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----------LISGSYDGRIMEWSSSSM----------HQDHSNLIVSLDNSKAQ-EYSS   62 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----------TEEEETTSCEEETTTTEE----------ECCCCSCEEEEECCSTT-CCEE
T ss_pred             ceeEEECCCCCceEEEEECc----------EEEEeCCCeEEEEECCCC----------CCCCCCCEEEEEecCCC-eEEE
Confidence            67889999999999999976          799999999999997542          13588899999998764 5789


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      ++.|+++++|+....         .....+.++.+++++..+++++ ++.+.+|+...+..   +..+..+ ..  ...+
T Consensus        63 ~s~D~~v~~w~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~-~~--~~~~  126 (287)
T d1pgua2          63 ISWDDTLKVNGITKH---------EFGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDI---IKSVRLN-SP--GSAV  126 (287)
T ss_dssp             EETTTEEEETTEEEE---------ECSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCE---EEEEECS-SC--EEEE
T ss_pred             Eeecccccccccccc---------ccccceeeeeeccCCceEEEee-cccceeeeccceee---eeecccc-ce--eeee
Confidence            999999999975321         1234577888999887777655 45678888765543   3333322 22  3456


Q ss_pred             cCCCCEEEEEeCCC-cEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          172 HPTMDVLFSCSYDN-TIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       172 ~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      +|++..+++++.++ .+++|++...     ...   ......|...+.+++|+|++.+|++|+.||.|++||+.....  
T Consensus       127 ~~~~~~~~v~~~~~~~v~~~~~~~~-----~~~---~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~--  196 (287)
T d1pgua2         127 SLSQNYVAVGLEEGNTIQVFKLSDL-----EVS---FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV--  196 (287)
T ss_dssp             EECSSEEEEEETTTSCEEEEETTEE-----EEE---EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--
T ss_pred             eccCcceeeeccccceeeeeecccc-----cee---eeeeeccCCceeEEEeccCccccccccccccccceeeccccc--
Confidence            77778888877765 7999976432     111   122235778899999999999999999999999999753221  


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCC-----------ceEEecCCCCeEEEEEccCCccccCcccceeeecccccCc
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSRE-----------GIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDM  319 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~  319 (352)
                               .......|...+.+++|+|.           .++++|+.|+++++|+....        ...+....+|..
T Consensus       197 ---------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~--------~~~~~~~~~h~~  259 (287)
T d1pgua2         197 ---------KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP--------MKIIKALNAHKD  259 (287)
T ss_dssp             ---------EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT--------TCCEEETTSSTT
T ss_pred             ---------ccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC--------CeEEEEeCCCCC
Confidence                     11112346677888887753           37999999999999975431        123445678999


Q ss_pred             ceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          320 DVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       320 ~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      .|++++|+|++.  |+|+|.||+|++|++
T Consensus       260 ~V~~v~~~~~~~--l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         260 GVNNLLWETPST--LVSSGADACIKRWNV  286 (287)
T ss_dssp             CEEEEEEEETTE--EEEEETTSCEEEEEE
T ss_pred             CeEEEEECCCCE--EEEEECCCeEEEEEE
Confidence            999999999863  679999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.6e-33  Score=240.07  Aligned_cols=222  Identities=17%  Similarity=0.280  Sum_probs=165.6

Q ss_pred             eeeeeeecCCc-cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeee---eeecceecceEEEEECCCC
Q 018675           11 LREIQTLEGHT-DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKA---VLEEMHTRTVRSCAWSPSG   86 (352)
Q Consensus        11 ~~~~~~~~gH~-~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~---~~~~~h~~~v~~~~~s~~~   86 (352)
                      ...+..+.||. ..|++++|+|..+    +.+|+||+.||+|+||++...........   .....|..+|.+++|++++
T Consensus        52 ~~~~~~~~gh~~~~v~~v~fsP~~~----g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~  127 (325)
T d1pgua1          52 VPPVVQFTGHGSSVVTTVKFSPIKG----SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG  127 (325)
T ss_dssp             SCSEEEECTTTTSCEEEEEECSSTT----CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS
T ss_pred             ccceEEEeCCCCCCEEEEEEeeCCC----CCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC
Confidence            34456677874 6899999999642    57999999999999999865432221111   1123477899999999999


Q ss_pred             CEEEEEeC--CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcE-EEEeeCCCcEEEEecCCCCeeEEEEEeecCc
Q 018675           87 KLLATASF--DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIWEVMPGNEFECVSVLQGHA  163 (352)
Q Consensus        87 ~~l~s~~~--d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~  163 (352)
                      ++|++++.  ++.+.+|+..++  .++..+.+|...|++++|+|++.. +++++.|+.+++||+...+..........|.
T Consensus       128 ~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~  205 (325)
T d1pgua1         128 RRLCVVGEGRDNFGVFISWDSG--NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG  205 (325)
T ss_dssp             SEEEEEECCSSCSEEEEETTTC--CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred             CccceeeccccceEEEEeeccc--ccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCC
Confidence            99988765  667899987765  456778899999999999998764 7889999999999986554333333445677


Q ss_pred             cCeeEEEEcCC-CCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEc
Q 018675          164 QDVKMVQWHPT-MDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG  242 (352)
Q Consensus       164 ~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd  242 (352)
                      ..|.+++|+|+ +.++++++.|+.|++|+....     .....+......+...++++.+ |++.+|++++.|+.|+|||
T Consensus       206 ~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~-----~~~~~l~~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd  279 (325)
T d1pgua1         206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-----EFLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWD  279 (325)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-----CEEEECCBTTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEE
T ss_pred             CccEEeeeccccceeccccccccceeeeeeccc-----cccccccccccccccceeeeec-cCCCEEEEEeCCCeEEEEE
Confidence            88999999996 678999999999999986543     2334443222223333445444 6889999999999999998


Q ss_pred             CC
Q 018675          243 AD  244 (352)
Q Consensus       243 ~~  244 (352)
                      ++
T Consensus       280 ~~  281 (325)
T d1pgua1         280 VT  281 (325)
T ss_dssp             TT
T ss_pred             CC
Confidence            74

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-32  Score=235.23  Aligned_cols=243  Identities=19%  Similarity=0.291  Sum_probs=198.1

Q ss_pred             eecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC
Q 018675           16 TLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        16 ~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      ...+|.+.|.+++|+|+      +++|++|+.|++|++|++......  ....+ ..|...+.+++|+|++.++++++.|
T Consensus        92 ~~~~h~~~I~~v~~s~d------g~~l~s~~~dg~i~iwd~~~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d  162 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLPD------GCTLIVGGEASTLSIWDLAAPTPR--IKAEL-TSSAPACYALAISPDSKVCFSCCSD  162 (337)
T ss_dssp             ECSCTTSBEEEEEECTT------SSEEEEEESSSEEEEEECCCC--E--EEEEE-ECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             eecCCCCcEEEEEEcCC------CCEEEEeecccccccccccccccc--ccccc-ccccccccccccccccccccccccc
Confidence            44689999999999997      578999999999999998754321  11112 3477889999999999999999999


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCC
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTM  175 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  175 (352)
                      +.+.+|+..+++  +.....+|...|.+++|++++..+++++.|+++++||++.+..   +.. ..|...|.+++|+|++
T Consensus       163 ~~i~~~~~~~~~--~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~---~~~-~~~~~~i~~l~~~~~~  236 (337)
T d1gxra_         163 GNIAVWDLHNQT--LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ---LQQ-HDFTSQIFSLGYCPTG  236 (337)
T ss_dssp             SCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---EEE-EECSSCEEEEEECTTS
T ss_pred             cccccccccccc--cccccccccccccccccccccccccccccccccccccccccee---ecc-cccccceEEEEEcccc
Confidence            999999987764  4556678999999999999999999999999999999976542   333 3477889999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCc
Q 018675          176 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYA  255 (352)
Q Consensus       176 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  255 (352)
                      ..+++++.|+.+++|++....     ...     ...|...|.+++|+|++++|++++.||.|++||+...+        
T Consensus       237 ~~l~~~~~d~~i~i~d~~~~~-----~~~-----~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~--------  298 (337)
T d1gxra_         237 EWLAVGMESSNVEVLHVNKPD-----KYQ-----LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--------  298 (337)
T ss_dssp             SEEEEEETTSCEEEEETTSSC-----EEE-----ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--------
T ss_pred             cccceeccccccccccccccc-----ccc-----ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC--------
Confidence            999999999999999876532     111     13688999999999999999999999999999875321        


Q ss_pred             cceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEc
Q 018675          256 SWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVE  296 (352)
Q Consensus       256 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~  296 (352)
                         ....  ..|...+.+++|++++ +|++++.|+.|++|+.
T Consensus       299 ---~~~~--~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         299 ---SIFQ--SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ---EEEE--EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ---EEEE--ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence               1111  2356789999999976 7899999999999953

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-31  Score=231.27  Aligned_cols=289  Identities=23%  Similarity=0.378  Sum_probs=201.5

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      +....|+||.+.|.+ +++++      +++|||||.|++|+|||+.+++..    ..+ ..|...|.+++|+|+  +|++
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~------g~~l~sgs~Dg~i~vWd~~~~~~~----~~~-~~h~~~V~~v~~~~~--~l~s   72 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFC------GNRIVSGSDDNTLKVWSAVTGKCL----RTL-VGHTGGVWSSQMRDN--IIIS   72 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEE------TTEEEEEETTSCEEEEETTTCCEE----EEC-CCCSSCEEEEEEETT--EEEE
T ss_pred             CcCEEECCcCCceEE-EEEEC------CCEEEEEeCCCeEEEEECCCCCEE----EEE-eCCCCCEEEEEeCCC--cccc
Confidence            566789999999864 24443      468999999999999999876532    222 458999999999874  9999


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCee--------------------------------------EEEECCCCcEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVK--------------------------------------SVSWNASGTLL  133 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~--------------------------------------~v~~~~~~~~l  133 (352)
                      |+.|+.+++|+........  ....+...+.                                      .....+....+
T Consensus        73 ~s~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (342)
T d2ovrb2          73 GSTDRTLKVWNAETGECIH--TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV  150 (342)
T ss_dssp             EETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCE
T ss_pred             ceeccccccccccccccee--cccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecccccee
Confidence            9999999999865432211  1111111111                                      11222334567


Q ss_pred             EEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCC
Q 018675          134 ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGH  213 (352)
Q Consensus       134 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h  213 (352)
                      ++++.|+.+++||....   .++..+.+|...+...  .+++..+++++.|+.|++|++....     ....+    .+|
T Consensus       151 ~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~-----~~~~~----~~~  216 (342)
T d2ovrb2         151 VSGAYDFMVKVWDPETE---TCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGN-----CIHTL----TGH  216 (342)
T ss_dssp             EEEETTSCEEEEEGGGT---EEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCC-----EEEEE----CCC
T ss_pred             eeecCCCeEEEeecccc---eeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccce-----eeeEe----ccc
Confidence            88888999999997543   3456677777655554  4567899999999999999875432     23322    368


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEee--cccCcceEEEEecCCceEEecCCCCeE
Q 018675          214 SSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS--GYHDRTIFSVHWSREGIIASGAADDSV  291 (352)
Q Consensus       214 ~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~s~~~d~~v  291 (352)
                      ...+.++.+++  ++|++++.||.|++||....+.           ...+.  ..+...+.++.+++ .++++++.||.|
T Consensus       217 ~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~~s~s~Dg~i  282 (342)
T d2ovrb2         217 QSLTSGMELKD--NILVSGNADSTVKIWDIKTGQC-----------LQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTV  282 (342)
T ss_dssp             CSCEEEEEEET--TEEEEEETTSCEEEEETTTCCE-----------EEEECSTTSCSSCEEEEEECS-SEEEEEETTSEE
T ss_pred             ccceeEEecCC--CEEEEEcCCCEEEEEecccccc-----------cccccccceeeeceeecccCC-CeeEEEcCCCEE
Confidence            88898887764  6899999999999999753221           11111  12455667777764 578899999999


Q ss_pred             EEEEccCCccccCcccceee-ecccccCcceeEEEecCCCcceEEEecCCCe----EEEEeecc
Q 018675          292 QFFVESKDDLIDGPSYKMLL-KKEKAHDMDVNSVQWSPGERRLLASASDDGM----IKIWELAN  350 (352)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~----i~iw~~~~  350 (352)
                      ++|+.....+.     ..+. ....+|...|++++|+|++. +|++|+.||+    |++||+..
T Consensus       283 ~iwd~~tg~~i-----~~~~~~~~~~~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         283 KLWDLKTGEFI-----RNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEETTTCCEE-----EEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEECCCCCEE-----EEEecccCCCCCCCEEEEEECCCCC-EEEEEeCCCCCeeEEEEEeCCC
Confidence            99976543221     1111 22357888999999999874 7899999985    99999864

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-31  Score=236.86  Aligned_cols=290  Identities=21%  Similarity=0.310  Sum_probs=205.6

Q ss_pred             EEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeee---------
Q 018675           41 VFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECV---------  111 (352)
Q Consensus        41 ~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~---------  111 (352)
                      ..+....++.+.+|+....+.+...... ...|++.|++++|+|||++||+|+ |++|++|+..+++....         
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~  107 (388)
T d1erja_          30 DALKKQTNDYYILYNPALPREIDVELHK-SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK  107 (388)
T ss_dssp             TTSEEECSSCEEEECTTSCCCEEEEEEE-EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------
T ss_pred             cccccCCCCcEEEeCCCCCcceeeeeEe-eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccc
Confidence            3556778899999997655433221111 124999999999999999999986 89999999876543211         


Q ss_pred             -------EeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCC
Q 018675          112 -------ATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD  184 (352)
Q Consensus       112 -------~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  184 (352)
                             .....|...|++++|+|++++|++|+.|++|++||...+   ..+....+|...|.++.+++++..+++++.+
T Consensus       108 ~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  184 (388)
T d1erja_         108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGD  184 (388)
T ss_dssp             -----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccc---ccccccccccccccccccccccccccccccc
Confidence                   112356778999999999999999999999999998654   3456678899999999999999999999999


Q ss_pred             CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc-CCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEe
Q 018675          185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN-AKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTI  263 (352)
Q Consensus       185 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  263 (352)
                      +.+++|+....     .......    .+. ....+.++ +++.+|++++.||.|++|+.+.......     .......
T Consensus       185 ~~i~~~d~~~~-----~~~~~~~----~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~-----~~~~~~~  249 (388)
T d1erja_         185 RTVRIWDLRTG-----QCSLTLS----IED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER-----LDSENES  249 (388)
T ss_dssp             SEEEEEETTTT-----EEEEEEE----CSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE-----EC-----
T ss_pred             eeeeeeecccc-----ccccccc----ccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCcccee-----ecccccc
Confidence            99999986542     1222221    233 34445554 5789999999999999999764321100     0000111


Q ss_pred             ecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCcccc---CcccceeeecccccCcceeEEEecCCCcceEEEecC
Q 018675          264 SGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLID---GPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASD  339 (352)
Q Consensus       264 ~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~  339 (352)
                      ...|...+.++.+++++ ++++++.|+.+++|+........   .............|...|++++|+|+++ +|++|+.
T Consensus       250 ~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~  328 (388)
T d1erja_         250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSK  328 (388)
T ss_dssp             -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEET
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC-EEEEEeC
Confidence            12367789999999875 78999999999999865432211   1111222334567899999999999986 6889999


Q ss_pred             CCeEEEEeeccC
Q 018675          340 DGMIKIWELANT  351 (352)
Q Consensus       340 Dg~i~iw~~~~~  351 (352)
                      ||.|++||+.+.
T Consensus       329 dg~i~vwd~~~~  340 (388)
T d1erja_         329 DRGVLFWDKKSG  340 (388)
T ss_dssp             TSEEEEEETTTC
T ss_pred             CCEEEEEECCCC
Confidence            999999998653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-31  Score=223.59  Aligned_cols=289  Identities=25%  Similarity=0.415  Sum_probs=208.6

Q ss_pred             eeeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           11 LREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        11 ~~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      +..+..+.+|...|+|++|.        +++|||||.||+|+|||+.+.+..    ..+ ..|...|++++|  ++++|+
T Consensus         5 ~~~i~~~~~~~~~V~c~~~d--------~~~l~sgs~Dg~i~vWd~~~~~~~----~~l-~~H~~~V~~v~~--~~~~l~   69 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQYD--------DQKIVSGLRDNTIKIWDKNTLECK----RIL-TGHTGSVLCLQY--DERVII   69 (293)
T ss_dssp             CCCEECCCSSCCCEEEEECC--------SSEEEEEESSSCEEEEESSSCCEE----EEE-CCCSSCEEEEEC--CSSEEE
T ss_pred             EEEEeccCCCCCCEEEEEEc--------CCEEEEEeCCCeEEEEECCCCcEE----EEE-ecCCCCEeeeec--ccceee
Confidence            45566777899999998763        368999999999999999876532    222 458999999876  678999


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      +|+.|+.+++|+...+...  .....+..  ....+.+....++++..++.+.+|+............+..|...+....
T Consensus        70 s~s~D~~i~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  145 (293)
T d1p22a2          70 TGSSDSTVRVWDVNTGEML--NTLIHHCE--AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD  145 (293)
T ss_dssp             EEETTSCEEEEESSSCCEE--EEECCCCS--CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEE
T ss_pred             ccccccccccccccccccc--cccccccc--ccccccccccceeecccccceeEeeccccccccccccccccccccccce
Confidence            9999999999998776432  22222222  2334456667889999999999999876665555666778888888777


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          171 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      +.+  ..+++++.|+.+++|+....     .....+    .++...+..+.++  +.++++++.||.|++||++...   
T Consensus       146 ~~~--~~~~~~s~d~~i~~~d~~~~-----~~~~~~----~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~---  209 (293)
T d1p22a2         146 FDD--KYIVSASGDRTIKVWNTSTC-----EFVRTL----NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA---  209 (293)
T ss_dssp             EET--TEEEEEETTSEEEEEETTTC-----CEEEEE----ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC---
T ss_pred             ecc--cccccccCCCceeeecCCCC-----cEEEEE----cccccccccccCC--CCeEEEecCCCEEEEEecccce---
Confidence            765  46889999999999987543     223333    2566778777765  5689999999999999975322   


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCC
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGE  330 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~  330 (352)
                              ...... .+...+..... ...++++++.|+.+++|+...............+....+|.+.|++++|++  
T Consensus       210 --------~~~~~~-~~~~~v~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~--  277 (293)
T d1p22a2         210 --------CLRVLE-GHEELVRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--  277 (293)
T ss_dssp             --------EEEEEC-CCSSCEEEEEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS--
T ss_pred             --------eeeeec-ccceeeeeccc-cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC--
Confidence                    111221 23444444433 356899999999999997654322222222334456678999999999964  


Q ss_pred             cceEEEecCCCeEEEEe
Q 018675          331 RRLLASASDDGMIKIWE  347 (352)
Q Consensus       331 ~~~l~s~~~Dg~i~iw~  347 (352)
                      . +|+|+|.||+|+|||
T Consensus       278 ~-~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         278 F-QIVSSSHDDTILIWD  293 (293)
T ss_dssp             S-CEEECCSSSEEEEEC
T ss_pred             C-EEEEEecCCEEEEeC
Confidence            3 588999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-30  Score=222.12  Aligned_cols=245  Identities=15%  Similarity=0.178  Sum_probs=184.4

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEee-ccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCC
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL-EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMP  149 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~  149 (352)
                      ..|.++|++++|+|++++|++|+.|++|++||..++.  +...+ .+|...|++++|+|++. +++++.|+++++|+...
T Consensus         9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~--~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~   85 (299)
T d1nr0a2           9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI--SNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGG   85 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSS
T ss_pred             CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc--EEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCC
Confidence            5699999999999999999999999999999987764  23344 57899999999999986 45677899999999754


Q ss_pred             CCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEE
Q 018675          150 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKL  229 (352)
Q Consensus       150 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l  229 (352)
                      ............+...+.++.++|++..+++++ ++.+.+|+...        .....     ....+.+++|+|++++|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--------~~~~~-----~~~~~~~~~~s~~~~~l  151 (299)
T d1nr0a2          86 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--------LTEVP-----ISYNSSCVALSNDKQFV  151 (299)
T ss_dssp             SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--------EEEEE-----CSSCEEEEEECTTSCEE
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccc--------ccccc-----ccccccccccccccccc
Confidence            321111122334667788999999998766554 56899996321        11111     23457789999999999


Q ss_pred             EEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccc
Q 018675          230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYK  308 (352)
Q Consensus       230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~  308 (352)
                      ++|+.||.|++||++....           .......|...+.++.+++++ ++++++.|+.+++|+.......      
T Consensus       152 ~~g~~dg~i~~~d~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~------  214 (299)
T d1nr0a2         152 AVGGQDSKVHVYKLSGASV-----------SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL------  214 (299)
T ss_dssp             EEEETTSEEEEEEEETTEE-----------EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE------
T ss_pred             ccccccccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccc------
Confidence            9999999999998753211           111112367789999999875 7889999999999976532111      


Q ss_pred             eeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          309 MLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       309 ~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .......+|...|++++|+|+++ +|++|+.||.|+||++..
T Consensus       215 ~~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         215 AHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             SCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTC
T ss_pred             ccccccccccccccccccccccc-ceEEEcCCCEEEEEECCC
Confidence            11234567999999999999986 688999999999999865

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8e-30  Score=218.34  Aligned_cols=245  Identities=29%  Similarity=0.550  Sum_probs=195.2

Q ss_pred             cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCC
Q 018675           71 EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPG  150 (352)
Q Consensus        71 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~  150 (352)
                      ..|.++|++++|+|++++|+||+.|++|++||..+++  ++..+.+|.+.|.+++|+|++.++++++.++++.+|+....
T Consensus        14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (317)
T d1vyhc1          14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF   91 (317)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--EEEEEeCCCCcEEEEeeeccccccccccccccccccccccc
Confidence            4599999999999999999999999999999987764  46778899999999999999999999999999999997654


Q ss_pred             CeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEE
Q 018675          151 NEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLV  230 (352)
Q Consensus       151 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~  230 (352)
                      .   ....+.+|...+.++.++|++..+++++.|+.+++|++....     ....+    .+|...+.+++|+|++.+|+
T Consensus        92 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~l~  159 (317)
T d1vyhc1          92 E---CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-----CVKTF----TGHREWVRMVRPNQDGTLIA  159 (317)
T ss_dssp             C---EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-----EEEEE----ECCSSCEEEEEECTTSSEEE
T ss_pred             c---cccccccccccceeeeccCCCceEEeeccCcceeEeecccce-----eeeEE----ccCCCcceeeecccCCCEEE
Confidence            3   345567788899999999999999999999999999875432     23333    26788999999999999999


Q ss_pred             EEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEe---------------------cCCceEEecCCCC
Q 018675          231 SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW---------------------SREGIIASGAADD  289 (352)
Q Consensus       231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------------------~~~~~~~s~~~d~  289 (352)
                      +++.|+.|++|+.......           ..+. .+...+..+.+                     .+...+++++.|+
T Consensus       160 ~~~~d~~v~~~~~~~~~~~-----------~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  227 (317)
T d1vyhc1         160 SCSNDQTVRVWVVATKECK-----------AELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  227 (317)
T ss_dssp             EEETTSCEEEEETTTCCEE-----------EEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             EEeCCCeEEEEeeccceee-----------EEEe-cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCC
Confidence            9999999999987643211           0010 12222333322                     2345788999999


Q ss_pred             eEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          290 SVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       290 ~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      .+++|+....         ..+....+|...|++++|+|+++ +|++++.||.|+|||+.+.
T Consensus       228 ~i~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         228 TIKMWDVSTG---------MCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             EEEEEETTTT---------EEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTS
T ss_pred             EEEEEECCCC---------cEEEEEeCCCCCEEEEEECCCCC-EEEEEECCCeEEEEECCCC
Confidence            9999976432         23445678999999999999986 6889999999999998653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-30  Score=229.63  Aligned_cols=314  Identities=15%  Similarity=0.183  Sum_probs=199.5

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeee-ecceec------ceEEEEECC
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL-EEMHTR------TVRSCAWSP   84 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~-~~~h~~------~v~~~~~s~   84 (352)
                      ......+||.+.|+++++++        ++++|||.|++|+||+..+........... ...|..      ....+..+.
T Consensus         5 ~~~~~~~~H~~~I~~v~~~~--------~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (393)
T d1sq9a_           5 ATANAGKAHDADIFSVSACN--------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDA   76 (393)
T ss_dssp             EEEEESSCSSSCEEEEEECS--------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTT
T ss_pred             eeeecCCcccCccEEEEEeC--------CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCC
Confidence            34556789999999999875        489999999999999975432111000000 011222      222223222


Q ss_pred             -CCCEEEEEeCCCcEEEEEccCCceee--e-E-----eeccccCCeeEEEECCC-----CcEEEEeeCCCcEEEEecCCC
Q 018675           85 -SGKLLATASFDATTCIWEDVGGDYEC--V-A-----TLEGHENEVKSVSWNAS-----GTLLATCGRDKSVWIWEVMPG  150 (352)
Q Consensus        85 -~~~~l~s~~~d~~i~i~~~~~~~~~~--~-~-----~~~~h~~~v~~v~~~~~-----~~~l~s~~~d~~v~vwd~~~~  150 (352)
                       ++.++++++.|+.+++|+....+...  . .     ....+...+..++|.++     +.++++++.|+++++|++...
T Consensus        77 ~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~  156 (393)
T d1sq9a_          77 FELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF  156 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred             CCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecC
Confidence             34578899999999999864322110  0 0     11234556778888765     467899999999999997422


Q ss_pred             C------------eeE---EEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeee--eccCCCC
Q 018675          151 N------------EFE---CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI--SESNNGH  213 (352)
Q Consensus       151 ~------------~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~--~~~~~~h  213 (352)
                      .            ...   .......+...+.+++|+|++ +|++|+.|+.|++|++....     .+..+  .....+|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~-----~~~~~~~~~~l~~h  230 (393)
T d1sq9a_         157 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-----PLYNFESQHSMINN  230 (393)
T ss_dssp             SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-----EEEEEECCC---CC
T ss_pred             CcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc-----cccccccccccccc
Confidence            1            111   111122344568899999987 88999999999999876432     22222  2234579


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCC---cEEEEcCCccccccC-CCCccceeeEEeecccCcceEEEEecCCc-eEEecCCC
Q 018675          214 SSTIWALSFNAKGDKLVSCSDDL---TIKIWGADITRMQSG-DGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAAD  288 (352)
Q Consensus       214 ~~~i~~l~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d  288 (352)
                      ..+|++|+|+|++++|++|+.|+   .|++||++....... ...............|...|.+++|+|++ +|++++.|
T Consensus       231 ~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D  310 (393)
T d1sq9a_         231 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD  310 (393)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred             cceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC
Confidence            99999999999999999999987   499999864321110 00000001111122478889999999976 89999999


Q ss_pred             CeEEEEEccCCccccCcccceeeecccccC---------------------cceeEEEecCCCc---------ceEEEec
Q 018675          289 DSVQFFVESKDDLIDGPSYKMLLKKEKAHD---------------------MDVNSVQWSPGER---------RLLASAS  338 (352)
Q Consensus       289 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~---------------------~~i~~~~~sp~~~---------~~l~s~~  338 (352)
                      ++|++|+......         +.++.+|.                     ..+.++.|.+.+.         ..|++++
T Consensus       311 ~~v~vWd~~~g~~---------~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (393)
T d1sq9a_         311 GKLRFWDVKTKER---------ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC  381 (393)
T ss_dssp             SEEEEEETTTTEE---------EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred             CEEEEEECCCCCE---------EEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEE
Confidence            9999998754322         22223333                     3455666655321         2367888


Q ss_pred             CCCeEEEEee
Q 018675          339 DDGMIKIWEL  348 (352)
Q Consensus       339 ~Dg~i~iw~~  348 (352)
                      .|+.||+|.-
T Consensus       382 ~d~~ir~~~~  391 (393)
T d1sq9a_         382 LDRSIRWFRE  391 (393)
T ss_dssp             TTTEEEEEEE
T ss_pred             cCCeEEEEeC
Confidence            8999998863

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.9e-29  Score=218.11  Aligned_cols=310  Identities=10%  Similarity=0.047  Sum_probs=203.7

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCC-CCEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPS-GKLLA   90 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~   90 (352)
                      +.++.+++|++.|++|+|+|+      +++|||||.|++|+||++............  ..|..+|.+++|+|+ +.+|+
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~------~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~--~~h~~~V~~v~f~~~~~~~l~   73 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPS------KSLLLITSWDGSLTVYKFDIQAKNVDLLQS--LRYKHPLLCCNFIDNTDLQIY   73 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGG------GTEEEEEETTSEEEEEEEETTTTEEEEEEE--EECSSCEEEEEEEESSSEEEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCC------CCEEEEEECCCeEEEEEccCCCcceEEEEe--cCCCCCEEEEEEeCCCCCEEE
Confidence            456778999999999999997      579999999999999998765443232222  348899999999986 46899


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCee-EEEEEeecCc--cCee
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF-ECVSVLQGHA--QDVK  167 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~h~--~~v~  167 (352)
                      +|+.|+.+++|+....... ......+........+.++...+++++.|+++++||++..... ........+.  ....
T Consensus        74 sg~~d~~v~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d1yfqa_          74 VGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK  152 (342)
T ss_dssp             EEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred             Ecccccceeeeeccccccc-ccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceee
Confidence            9999999999998665432 2222223333445556677889999999999999998543321 2222222222  2344


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc-CCCCEEEEEeCCCcEEEEcCCcc
Q 018675          168 MVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN-AKGDKLVSCSDDLTIKIWGADIT  246 (352)
Q Consensus       168 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~~~l~s~~~dg~i~iwd~~~~  246 (352)
                      ...+.+.+..+++++.|+.|++|++..........  ..    ..+...+.+..+. +++..+++++.||.+.+|+.+..
T Consensus       153 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~  226 (342)
T d1yfqa_         153 IFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI--EE----SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEE--EE----CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             eeeeeccCCceeeecCCCcEEEEecccCcccceee--ee----cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCC
Confidence            56677888899999999999999976543221111  11    1233445555554 46788999999999999987532


Q ss_pred             ccccCCCCccceee----EEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcce
Q 018675          247 RMQSGDGYASWRHL----CTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDV  321 (352)
Q Consensus       247 ~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i  321 (352)
                      ....... ......    ......+...+.+++|+|++ ++++|+.||.|++|+....        ..+......|.  +
T Consensus       227 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~--------~~l~~~~~~~~--~  295 (342)
T d1yfqa_         227 GDDYNSS-KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--------KKIKNFAKFNE--D  295 (342)
T ss_dssp             CCSTTCT-TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT--------EEEEECCCCSS--S
T ss_pred             cceeecc-ccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC--------cEEEEecCCCC--C
Confidence            2111000 000000    00011245568899999975 8999999999999976432        12222223344  4


Q ss_pred             eEEEecCCCcceEEEecCCCeEEEEee
Q 018675          322 NSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       322 ~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      ..++|+|+++ +|++++.|+++++|..
T Consensus       296 ~~~~~s~~~~-~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         296 SVVKIACSDN-ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEEEECSS-EEEEEEECTHHHHCSS
T ss_pred             EEEEEEeCCC-EEEEEEcCCcEEEeee
Confidence            4566677775 5667777877776654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.4e-28  Score=209.80  Aligned_cols=205  Identities=15%  Similarity=0.241  Sum_probs=151.1

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCC-eEEEEecCCCceeeeeeeeeecceecceEEEEECC--CCCEEEEEeCCCcEE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDK-TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSP--SGKLLATASFDATTC   99 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~-~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~i~   99 (352)
                      .+++++|+|.      ++.|+.++.+. .++.|+.......  ....+...|...|++++|+|  +|++|++|+.||+|+
T Consensus        19 ~~t~l~~~~~------~~~la~~~~~~~~i~~~~~~~~~~~--~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~   90 (325)
T d1pgua1          19 FTTHLSYDPT------TNAIAYPCGKSAFVRCLDDGDSKVP--PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI   90 (325)
T ss_dssp             CCCCCEEETT------TTEEEEEETTEEEEEECCSSCCSSC--SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred             CeEEEEECCC------CCEEEEEeCCCEEEEEEeCCCCCcc--ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEE
Confidence            4578899997      46788776554 4667765443211  11112122356899999998  578999999999999


Q ss_pred             EEEccCCce------eeeEeeccccCCeeEEEECCCCcEEEEeeC--CCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675          100 IWEDVGGDY------ECVATLEGHENEVKSVSWNASGTLLATCGR--DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus       100 i~~~~~~~~------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      +||...+..      ........|.++|.+++|+++++++++++.  ++.+.+|+...+.   ++..+.+|...++++.|
T Consensus        91 iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~  167 (325)
T d1pgua1          91 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN---SLGEVSGHSQRINACHL  167 (325)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC---EEEECCSCSSCEEEEEE
T ss_pred             EeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc---cceeeeecccccccccc
Confidence            998753221      112234568899999999999999887764  6789999986553   45677889999999999


Q ss_pred             cCCCCE-EEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEcCC
Q 018675          172 HPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK-GDKLVSCSDDLTIKIWGAD  244 (352)
Q Consensus       172 ~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~~~dg~i~iwd~~  244 (352)
                      +|++.. +++++.|+.+++|+....     +..... ....+|...|.+++|+|+ +.++++++.||.|++||++
T Consensus       168 ~~~~~~~~~~~~~d~~v~~~d~~~~-----~~~~~~-~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~  236 (325)
T d1pgua1         168 KQSRPMRSMTVGDDGSVVFYQGPPF-----KFSASD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  236 (325)
T ss_dssp             CSSSSCEEEEEETTTEEEEEETTTB-----EEEEEE-CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             cccccceEEEeeccccccccccccc-----ccceec-ccccCCCCccEEeeeccccceeccccccccceeeeeec
Confidence            998764 778999999999976432     222222 233468889999999997 6889999999999999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.4e-27  Score=204.79  Aligned_cols=268  Identities=14%  Similarity=0.128  Sum_probs=179.4

Q ss_pred             eecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCce-eeeEeeccccCCeeEEEECCC-CcEEEEeeCCCcEEEEe
Q 018675           69 LEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY-ECVATLEGHENEVKSVSWNAS-GTLLATCGRDKSVWIWE  146 (352)
Q Consensus        69 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~v~vwd  146 (352)
                      +...|+..|++++|+|++++||+|+.|++|++||...+.. .......+|.++|.+++|+|+ +.+|++|+.|++|++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            3467999999999999999999999999999999765432 223333469999999999986 55899999999999999


Q ss_pred             cCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCC
Q 018675          147 VMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKG  226 (352)
Q Consensus       147 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~  226 (352)
                      +.......  .....+........+.++...+++++.++.+++|++....... .........  ..........+.+.+
T Consensus        86 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          86 LIGSPSFQ--ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV-IAVKNLNSN--NTKVKNKIFTMDTNS  160 (342)
T ss_dssp             SSSSSSEE--ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC-EEEEESCSS--SSSSCCCEEEEEECS
T ss_pred             cccccccc--cccccccccccccccccccccccccccccccceeeccccccce-eeecccccc--cccceeeeeeeeccC
Confidence            87554322  1222233333455566778899999999999999865432211 111111111  122234456677888


Q ss_pred             CEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecC--CceEEecCCCCeEEEEEccCCccccC
Q 018675          227 DKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSR--EGIIASGAADDSVQFFVESKDDLIDG  304 (352)
Q Consensus       227 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~s~~~d~~v~~~~~~~~~~~~~  304 (352)
                      ..+++++.|+.|++|++.......        .... ............+.+  ...+++++.|+.+.+|..........
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~  231 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDN--------GTIE-ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCC--------CEEE-ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             CceeeecCCCcEEEEecccCcccc--------eeee-ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceee
Confidence            899999999999999976432110        0001 111222333333333  34788999999999997654322111


Q ss_pred             ccc------ceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          305 PSY------KMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       305 ~~~------~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      ...      ........+|...|++++|+|+++ +|+|||.||+|+|||+.++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTT
T ss_pred             ccccceeeeeeeccCCCcccccceeEEecCCcc-EEEEECCCCEEEEEECCCC
Confidence            110      111123456788999999999986 6899999999999998753

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=3.7e-26  Score=197.83  Aligned_cols=252  Identities=21%  Similarity=0.340  Sum_probs=194.1

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..+.++.+|...|++++|+|+      +.++++|+.|+.+++|+.............+ ..|....... ....+..+..
T Consensus        88 ~~~~~~~~~~~~v~~v~~~~~------~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~  159 (340)
T d1tbga_          88 NKVHAIPLRSSWVMTCAYAPS------GNYVACGGLDNICSIYNLKTREGNVRVSREL-AGHTGYLSCC-RFLDDNQIVT  159 (340)
T ss_dssp             EEEEEEECSCSCEEEEEECTT------SSEEEEEETTCCEEEEESSSSCSCCCEEEEE-CCCSSCEEEE-EEEETTEEEE
T ss_pred             eeEEEEecccccEEeeEeecc------ceeeeeecccceeecccccccccccccceec-cccccccccc-cccccccccc
Confidence            455678899999999999997      5799999999999999976554322222222 2344444433 3445567778


Q ss_pred             EeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEE
Q 018675           92 ASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~  171 (352)
                      ...|.....+......  .......+...+....+.+.+.++++++.|+.|++||+..+   .++..+.+|...|++++|
T Consensus       160 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~---~~~~~~~~h~~~i~~v~~  234 (340)
T d1tbga_         160 SSGDTTCALWDIETGQ--QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICF  234 (340)
T ss_dssp             EETTTEEEEEETTTTE--EEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECCCSSCEEEEEE
T ss_pred             cccccccccccccccc--ccccccccceeEeeeccccccceeEEeecCceEEEEECCCC---cEEEEEeCCCCCeEEEEE
Confidence            8889988888765542  33444567788999999999999999999999999998755   456678889999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG  251 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (352)
                      +|++.+|++++.|+.|++|+....     ......  ....+...|.+++|+|++.+|++|+.||.|++||+...     
T Consensus       235 ~p~~~~l~s~s~d~~i~~~~~~~~-----~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-----  302 (340)
T d1tbga_         235 FPNGNAFATGSDDATCRLFDLRAD-----QELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-----  302 (340)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTT-----EEEEEE--CCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC-----
T ss_pred             CCCCCEEEEEeCCCeEEEEeeccc-----cccccc--ccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC-----
Confidence            999999999999999999987543     222222  22356678999999999999999999999999997532     


Q ss_pred             CCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEE
Q 018675          252 DGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFV  295 (352)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~  295 (352)
                            .....+. .|...|.+++|++++ ++++|+.||.|++|+
T Consensus       303 ------~~~~~~~-~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         303 ------DRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ------CEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ------cEEEEEc-CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence                  2233333 467889999999976 899999999999993

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=6.9e-27  Score=204.42  Aligned_cols=285  Identities=11%  Similarity=0.063  Sum_probs=197.1

Q ss_pred             eEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCC--cEEEE
Q 018675           24 VWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDA--TTCIW  101 (352)
Q Consensus        24 V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~--~i~i~  101 (352)
                      ++.-.|+|.+     ++++|+++ ++.|.+|+...+..    .   ...|...|++++|+|||+.|++++.+.  .+.+|
T Consensus         5 ~~~~~fSP~d-----G~~~a~~~-~g~v~v~d~~~~~~----~---~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~   71 (360)
T d1k32a3           5 KFAEDFSPLD-----GDLIAFVS-RGQAFIQDVSGTYV----L---KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIY   71 (360)
T ss_dssp             GGEEEEEECG-----GGCEEEEE-TTEEEEECTTSSBE----E---ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEE
T ss_pred             hhcccccCCC-----CCEEEEEE-CCeEEEEECCCCcE----E---EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEE
Confidence            3456899943     67888876 57999999876532    1   124888999999999999998877654  78999


Q ss_pred             EccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEE
Q 018675          102 EDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC  181 (352)
Q Consensus       102 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  181 (352)
                      +..++.   ...+..|...|.+++|+|++++|++++.++.+++|++..+.   ....+..|...+.+++|+|++++|+.+
T Consensus        72 d~~~~~---~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~la~~  145 (360)
T d1k32a3          72 DYRTGK---AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK---PTVIERSREAMITDFTISDNSRFIAYG  145 (360)
T ss_dssp             ETTTCC---EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             ECCCCc---EEEeeCCCceEEeeeecccccccceeccccccccccccccc---eeeeeecccccccchhhccceeeeeee
Confidence            987764   34566899999999999999999999999999999987654   345566788888999999999998865


Q ss_pred             e----------CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccC
Q 018675          182 S----------YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSG  251 (352)
Q Consensus       182 ~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  251 (352)
                      .          .++.+++|+.....     .. .+    ..+...+..+.|+|+|++|++++.++.+++|+.........
T Consensus       146 ~~~~~~~~~~~~~~~~~v~d~~~~~-----~~-~~----~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~  215 (360)
T d1k32a3         146 FPLKHGETDGYVMQAIHVYDMEGRK-----IF-AA----TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE  215 (360)
T ss_dssp             EEECSSTTCSCCEEEEEEEETTTTE-----EE-EC----SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECC
T ss_pred             ccccccceeeccccceeeeccccCc-----ee-ee----cccccccccccccCCCCEEEEEeCCCceEcccccccceeec
Confidence            4          34468889765431     11 11    13556788899999999999999999999998542211100


Q ss_pred             CCCc--------------cc------------------eeeEEee---------cccCcceEEEEecCCc----eEEecC
Q 018675          252 DGYA--------------SW------------------RHLCTIS---------GYHDRTIFSVHWSREG----IIASGA  286 (352)
Q Consensus       252 ~~~~--------------~~------------------~~~~~~~---------~~~~~~i~~~~~~~~~----~~~s~~  286 (352)
                      ....              .+                  .....+.         ..+...+..+.+...+    ++++++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (360)
T d1k32a3         216 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP  295 (360)
T ss_dssp             SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC
T ss_pred             cccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecC
Confidence            0000              00                  0000000         0011111122222211    356667


Q ss_pred             CCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          287 ADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       287 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      .++.+++|+....             +...|.+.|.+++|||||++ |++++.||.|++|++.++
T Consensus       296 ~~~~i~~~d~~~~-------------~~~~~~~~v~~~~~SpDG~~-l~~~~~Dg~i~v~d~~~~  346 (360)
T d1k32a3         296 EKGVLLKYDVKTR-------------KVTEVKNNLTDLRLSADRKT-VMVRKDDGKIYTFPLEKP  346 (360)
T ss_dssp             CCEEEEEEETTTC-------------CEEEEEEEEEEEEECTTSCE-EEEEETTSCEEEEESSCT
T ss_pred             CCCEEEEEECCCC-------------eEEEecCCcCEEEECCCCCE-EEEEECCCeEEEEECCCC
Confidence            7788888865431             11245567999999999974 679999999999999764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.2e-26  Score=206.41  Aligned_cols=272  Identities=17%  Similarity=0.186  Sum_probs=175.1

Q ss_pred             ecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCce----eeeEeeccccCCeeEEEE------CC-CCcEEEEeeC
Q 018675           70 EEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDY----ECVATLEGHENEVKSVSW------NA-SGTLLATCGR  138 (352)
Q Consensus        70 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~----~~~~~~~~h~~~v~~v~~------~~-~~~~l~s~~~  138 (352)
                      .+.|...|+++++++  ++++|++.|++|++|+..+.+.    ........|...+..+..      +. +..++++++.
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            367999999999874  6899999999999998654321    111122234443332222      11 2346889999


Q ss_pred             CCcEEEEecCCCCeeEEEE--Ee-----ecCccCeeEEEEcCC-----CCEEEEEeCCCcEEEEecCCCCC---------
Q 018675          139 DKSVWIWEVMPGNEFECVS--VL-----QGHAQDVKMVQWHPT-----MDVLFSCSYDNTIKVWWAEDTDS---------  197 (352)
Q Consensus       139 d~~v~vwd~~~~~~~~~~~--~~-----~~h~~~v~~~~~~~~-----~~~l~s~~~d~~i~iw~~~~~~~---------  197 (352)
                      |+++++|++..........  ..     ..+...+..++|.++     +.++++++.|+.+++|++.....         
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence            9999999975433211111  11     123445667777765     35789999999999998743211         


Q ss_pred             CCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEec
Q 018675          198 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS  277 (352)
Q Consensus       198 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  277 (352)
                      ...............+...+.+++|+|++ +|++|+.||+|++||+...+...     .......+ ..|...|.+++|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~-----~~~~~~~l-~~h~~~V~~l~~s  240 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY-----NFESQHSM-INNSNSIRSVKFS  240 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE-----EEECCC----CCCCCEEEEEEC
T ss_pred             ccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccc-----cccccccc-ccccceEEEcccc
Confidence            01111111222334566778999999997 88999999999999986432210     00000111 2367889999999


Q ss_pred             CCc-eEEecCCCCe---EEEEEccCCccccCc----ccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          278 REG-IIASGAADDS---VQFFVESKDDLIDGP----SYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       278 ~~~-~~~s~~~d~~---v~~~~~~~~~~~~~~----~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      |++ +|++|+.|++   +++|+..........    ..........+|...|++++|+|+++ +|+|+|.|++|+|||++
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETT
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEECC
Confidence            976 7889988874   888976543322111    11122234468999999999999986 68999999999999987


Q ss_pred             cC
Q 018675          350 NT  351 (352)
Q Consensus       350 ~~  351 (352)
                      .+
T Consensus       320 ~g  321 (393)
T d1sq9a_         320 TK  321 (393)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.4e-26  Score=199.76  Aligned_cols=246  Identities=22%  Similarity=0.343  Sum_probs=173.4

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      +.+.+|++|.+.|++++|+|+       .+|+||+.|+++++|+...........   ...+........++++++.+++
T Consensus        44 ~~~~~l~~H~~~V~~l~~s~~-------~~l~s~s~D~~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  113 (355)
T d1nexb2          44 KFLLQLSGHDGGVWALKYAHG-------GILVSGSTDRTVRVWDIKKGCCTHVFE---GHNSTVRCLDIVEYKNIKYIVT  113 (355)
T ss_dssp             EEEEEEECCSSCEEEEEEETT-------TEEEEEETTCCEEEEETTTTEEEEEEC---CCSSCEEEEEEEEETTEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEEcCC-------CEEEEEecccccccccccccccccccc---cccccccccccccccccceeee
Confidence            567789999999999999985       489999999999999987664322111   1112233444555666666666


Q ss_pred             EeCCCcEEEEEccCCc-------------------------------------------------------------eee
Q 018675           92 ASFDATTCIWEDVGGD-------------------------------------------------------------YEC  110 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~-------------------------------------------------------------~~~  110 (352)
                      ++.|+.+++|+.....                                                             ...
T Consensus       114 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  193 (355)
T d1nexb2         114 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC  193 (355)
T ss_dssp             EETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE
T ss_pred             ecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccc
Confidence            6666666666543210                                                             012


Q ss_pred             eEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 018675          111 VATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW  190 (352)
Q Consensus       111 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw  190 (352)
                      .....++...+.++.|+|++..+++++.|++|++||+..+.   .+..+.+|...|.++++++  +++++++.|+.|++|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iw  268 (355)
T d1nexb2         194 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE---LMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGW  268 (355)
T ss_dssp             EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC---EEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEE
T ss_pred             eeeeeccccccccccccccceeeecccccceEEeeeccccc---ccccccccccccccccccc--ceeeeeecccccccc
Confidence            23344566778889999999999999999999999987654   4566789999999999875  589999999999999


Q ss_pred             ecCCCCCCCceeEeeeeccCCCCcccEEEE-EEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCc
Q 018675          191 WAEDTDSDNWHCVQTISESNNGHSSTIWAL-SFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDR  269 (352)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (352)
                      ++....     .  .+.    .|...+.++ .+++++.++++| .||.|++||++..+...           .....|..
T Consensus       269 d~~~~~-----~--~~~----~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~-----------~~~~~~~~  325 (355)
T d1nexb2         269 DANDYS-----R--KFS----YHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVH-----------ANILKDAD  325 (355)
T ss_dssp             ETTTCC-----E--EEE----EECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCC-----------SCTTTTCS
T ss_pred             cccccc-----e--ecc----cccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEE-----------EEecCCCC
Confidence            876432     1  111    244444444 456677666655 58999999986433211           01123567


Q ss_pred             ceEEEEecCCceEEecCCCCeEEEEE
Q 018675          270 TIFSVHWSREGIIASGAADDSVQFFV  295 (352)
Q Consensus       270 ~i~~~~~~~~~~~~s~~~d~~v~~~~  295 (352)
                      .|.+++++++..+++++.||.+.+|.
T Consensus       326 ~V~~v~~~~~~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         326 QIWSVNFKGKTLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEEEEEETTEEEEEEESSSCEEEEE
T ss_pred             CEEEEEEcCCeEEEEEECCCcEEEEE
Confidence            79999999988888999999987773

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-23  Score=179.35  Aligned_cols=253  Identities=25%  Similarity=0.472  Sum_probs=177.5

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeee---e------------------
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL---E------------------   70 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~---~------------------   70 (352)
                      +.+.++.+|.+.|++++|+|+        +|++|+.|+++++|+..............   .                  
T Consensus        48 ~~~~~~~~h~~~V~~v~~~~~--------~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  119 (342)
T d2ovrb2          48 KCLRTLVGHTGGVWSSQMRDN--------IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL  119 (342)
T ss_dssp             CEEEECCCCSSCEEEEEEETT--------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred             CEEEEEeCCCCCEEEEEeCCC--------ccccceecccccccccccccceecccccceeEeeeecccccccccccceeE
Confidence            456789999999999999874        79999999999999976543211110000   0                  


Q ss_pred             ------------cceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC
Q 018675           71 ------------EMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR  138 (352)
Q Consensus        71 ------------~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~  138 (352)
                                  .............+....+++++.|+.+++|+....  .++..+.+|...+..+.  +++.++++++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~--~~~~~l~s~~~  195 (342)
T d2ovrb2         120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE--TCLHTLQGHTNRVYSLQ--FDGIHVVSGSL  195 (342)
T ss_dssp             EEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT--EEEEEECCCSSCEEEEE--ECSSEEEEEET
T ss_pred             EEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccc--eeeEEEcCccccccccc--CCCCEEEEEeC
Confidence                        000001111233445667888999999999998655  45667778877766655  46789999999


Q ss_pred             CCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEE
Q 018675          139 DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIW  218 (352)
Q Consensus       139 d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~  218 (352)
                      |++|++||++...   ++..+.+|...+.++.+++  +++++++.|+.|++|+.....     ....+ .....|...+.
T Consensus       196 dg~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~-----~~~~~-~~~~~~~~~~~  264 (342)
T d2ovrb2         196 DTSIRVWDVETGN---CIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQ-----CLQTL-QGPNKHQSAVT  264 (342)
T ss_dssp             TSCEEEEETTTCC---EEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCC-----EEEEE-CSTTSCSSCEE
T ss_pred             CCeEEEeecccce---eeeEecccccceeEEecCC--CEEEEEcCCCEEEEEeccccc-----ccccc-cccceeeecee
Confidence            9999999987654   4566788888888877765  589999999999999875432     12222 22345777888


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEE-eecccCcceEEEEecCCc-eEEecCCCCe----EE
Q 018675          219 ALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCT-ISGYHDRTIFSVHWSREG-IIASGAADDS----VQ  292 (352)
Q Consensus       219 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~~s~~~d~~----v~  292 (352)
                      ++.++  ++++++|+.||+|++||++..+..        +.... ....|...|.++++++++ ++++|+.||+    ++
T Consensus       265 ~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i--------~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~  334 (342)
T d2ovrb2         265 CLQFN--KNFVITSSDDGTVKLWDLKTGEFI--------RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL  334 (342)
T ss_dssp             EEEEC--SSEEEEEETTSEEEEEETTTCCEE--------EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEE
T ss_pred             ecccC--CCeeEEEcCCCEEEEEECCCCCEE--------EEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEE
Confidence            88776  468999999999999998643221        11111 112456779999999987 5778888885    77


Q ss_pred             EEEcc
Q 018675          293 FFVES  297 (352)
Q Consensus       293 ~~~~~  297 (352)
                      +|+..
T Consensus       335 ~~Df~  339 (342)
T d2ovrb2         335 VLDFD  339 (342)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            77653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.6e-24  Score=183.82  Aligned_cols=245  Identities=13%  Similarity=0.127  Sum_probs=176.6

Q ss_pred             cCCccceeee-eeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEEC
Q 018675            5 DDGNYELREI-QTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWS   83 (352)
Q Consensus         5 ~~~~~~~~~~-~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s   83 (352)
                      .|+.+++..+ ...++|...|.++++++.       ..+++++.|+++++|+....            .....+..++++
T Consensus        29 ~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~-------~~~~s~s~D~~v~~w~~~~~------------~~~~~~~~~~~~   89 (287)
T d1pgua2          29 YDGRIMEWSSSSMHQDHSNLIVSLDNSKA-------QEYSSISWDDTLKVNGITKH------------EFGSQPKVASAN   89 (287)
T ss_dssp             TTSCEEETTTTEEECCCCSCEEEEECCST-------TCCEEEETTTEEEETTEEEE------------ECSSCEEEEEEC
T ss_pred             CCCeEEEEECCCCCCCCCCCEEEEEecCC-------CeEEEEeecccccccccccc------------ccccceeeeeec
Confidence            4566555333 245789999999999875       46899999999999986421            123456778899


Q ss_pred             CCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCC-CcEEEEecCCCCeeEEEEEeecC
Q 018675           84 PSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRD-KSVWIWEVMPGNEFECVSVLQGH  162 (352)
Q Consensus        84 ~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-~~v~vwd~~~~~~~~~~~~~~~h  162 (352)
                      +++..++++ .++.+.+|+...++.  ...+. +...+  .+++++++.++.++.| +.+++|++....  ........|
T Consensus        90 ~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~-~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~--~~~~~~~~~  161 (287)
T d1pgua2          90 NDGFTAVLT-NDDDLLILQSFTGDI--IKSVR-LNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLE--VSFDLKTPL  161 (287)
T ss_dssp             SSSEEEEEE-TTSEEEEEETTTCCE--EEEEE-CSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEE--EEEECSSCC
T ss_pred             cCCceEEEe-ecccceeeeccceee--eeecc-cccee--eeeeccCcceeeeccccceeeeeeccccc--eeeeeeecc
Confidence            988877765 556677887766543  33333 22333  4556777777777766 579999975322  122223346


Q ss_pred             ccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCC----------CCEEEEE
Q 018675          163 AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAK----------GDKLVSC  232 (352)
Q Consensus       163 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~----------~~~l~s~  232 (352)
                      ...+++++|+|++.+|++++.|+.|++|+.....     .   ......+|..+|.+++|+|.          +.+|++|
T Consensus       162 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-----~---~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg  233 (287)
T d1pgua2         162 RAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----V---KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG  233 (287)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----E---EECCSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred             CCceeEEEeccCccccccccccccccceeecccc-----c---ccccccccccccceeeecccccccccccCCCCeeEee
Confidence            6789999999999999999999999999875431     1   11233578999999999874          4689999


Q ss_pred             eCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEE
Q 018675          233 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFV  295 (352)
Q Consensus       233 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~  295 (352)
                      +.|++|++||++...          .. ......|...+.++.|++++.+++++.|+.+++|+
T Consensus       234 s~D~~i~iw~~~~~~----------~~-~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         234 SLDTNIFIYSVKRPM----------KI-IKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN  285 (287)
T ss_dssp             ETTSCEEEEESSCTT----------CC-EEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             cCCCeEEEEECCCCC----------eE-EEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEE
Confidence            999999999975321          11 12223477889999999999999999999999995

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.6e-22  Score=169.16  Aligned_cols=247  Identities=22%  Similarity=0.373  Sum_probs=177.6

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      +.+.+|++|.+.|++++|.+        .+|+||+.|+++++|++..+.......       ........+.+....+++
T Consensus        46 ~~~~~l~~H~~~V~~v~~~~--------~~l~s~s~D~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  110 (293)
T d1p22a2          46 ECKRILTGHTGSVLCLQYDE--------RVIITGSSDSTVRVWDVNTGEMLNTLI-------HHCEAVLHLRFNNGMMVT  110 (293)
T ss_dssp             CEEEEECCCSSCEEEEECCS--------SEEEEEETTSCEEEEESSSCCEEEEEC-------CCCSCEEEEECCTTEEEE
T ss_pred             cEEEEEecCCCCEeeeeccc--------ceeeccccccccccccccccccccccc-------ccccccccccccccceee
Confidence            45678899999999998854        589999999999999998765322111       112223345566778999


Q ss_pred             EeCCCcEEEEEccCCc-eeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEE
Q 018675           92 ASFDATTCIWEDVGGD-YECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQ  170 (352)
Q Consensus        92 ~~~d~~i~i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~  170 (352)
                      +..++.+.+|+..... ......+..|...|.++.+.+  ..+++++.|+++++||+...+   .+..+.++...+..+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~---~~~~~~~~~~~v~~~~  185 (293)
T d1p22a2         111 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCE---FVRTLNGHKRGIACLQ  185 (293)
T ss_dssp             EETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEE
T ss_pred             cccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCc---EEEEEccccccccccc
Confidence            9999999999976543 233445677888888887755  568899999999999987654   4556778888887777


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCcccccc
Q 018675          171 WHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQS  250 (352)
Q Consensus       171 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (352)
                      ++  +..+++++.|+.|++|++....     .....    .+|...+..  +++++.+|++|+.||.|++||+.......
T Consensus       186 ~~--~~~l~~~~~dg~i~i~d~~~~~-----~~~~~----~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~  252 (293)
T d1p22a2         186 YR--DRLVVSGSSDNTIRLWDIECGA-----CLRVL----EGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPR  252 (293)
T ss_dssp             EE--TTEEEEEETTSCEEEEETTTCC-----EEEEE----CCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred             CC--CCeEEEecCCCEEEEEecccce-----eeeee----cccceeeee--ccccceEEEEEcCCCEEEEEECCCCcccc
Confidence            75  4589999999999999876432     22222    256666654  55678899999999999999875322111


Q ss_pred             CCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEE
Q 018675          251 GDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFV  295 (352)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~  295 (352)
                      .  .........+ ..|...|.++++++ .+|++++.|++|++|+
T Consensus       253 ~--~~~~~~~~~~-~~H~~~V~~v~~d~-~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         253 A--PAGTLCLRTL-VEHSGRVFRLQFDE-FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             S--CTTTTEEEEE-CCCSSCCCCEEECS-SCEEECCSSSEEEEEC
T ss_pred             c--cCCceeeEEe-cCCCCCEEEEEEcC-CEEEEEecCCEEEEeC
Confidence            1  1111222333 34777888999864 5799999999999994

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.1e-21  Score=176.06  Aligned_cols=316  Identities=9%  Similarity=0.018  Sum_probs=187.9

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE-
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA-   90 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-   90 (352)
                      +.+.++.+| ..+.+++|+|+      ++++++++.|+++++||+.+.+............|...+.+++|+|||++++ 
T Consensus        53 ~~~~~l~~g-~~~~~vafSPD------Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v  125 (426)
T d1hzua2          53 KIVKVIDTG-YAVHISRMSAS------GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA  125 (426)
T ss_dssp             SEEEEEECC-SSEEEEEECTT------SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             cEEEEEeCC-CCeeEEEECCC------CCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEE
Confidence            456677777 46999999997      6899999999999999998775332221112234667788889999999865 


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeeccccCCeeE-----------EEECCCCcEEEEee-CCCcEEEEecCCCCeeEEEEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEGHENEVKS-----------VSWNASGTLLATCG-RDKSVWIWEVMPGNEFECVSV  158 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~-----------v~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~  158 (352)
                      ++..++.+.+||..++.  +...+..|...+..           +.+++++..++... ..+.+.+++........  ..
T Consensus       126 ~~~~~~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~--~~  201 (426)
T d1hzua2         126 GAYWPPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VT  201 (426)
T ss_dssp             EEEESSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCE--EE
T ss_pred             eecCCCeEEEEcCCccc--eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccccee--eE
Confidence            45578999999987664  34444444444443           44444444433322 22344444433222211  12


Q ss_pred             eecCccCeeEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-E--EEEEeC
Q 018675          159 LQGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-K--LVSCSD  234 (352)
Q Consensus       159 ~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~--l~s~~~  234 (352)
                      ...+...+..+.++|++++++++.. +..+.+++....     ............|..  ..+.+.+.+. .  .++.+.
T Consensus       202 ~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  274 (426)
T d1hzua2         202 SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR-----RLSALVDVGKTPHPG--RGANFVHPKYGPVWSTSHLG  274 (426)
T ss_dssp             EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT-----EEEEEEECSSCCCCS--CCEEEEETTTEEEEEEECTT
T ss_pred             EeccCCccEeeeECCCCcEEEeeeecccceeeeecccc-----cEEEEeccCCccccc--ceeeeecCCCCceEEeccCC
Confidence            2345667888999999998877765 456777765442     222222211111211  1223322222 1  223445


Q ss_pred             CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEE-------ecCCCCeEEEEEccCCccccCcc
Q 018675          235 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIA-------SGAADDSVQFFVESKDDLIDGPS  306 (352)
Q Consensus       235 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~-------s~~~d~~v~~~~~~~~~~~~~~~  306 (352)
                      |+.+.+|+......    ....|+....+. .|...+..++++|++ +++       +++.++++++|+...........
T Consensus       275 d~~v~~~~~~~~~~----~~~~~~~~~~l~-g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~  349 (426)
T d1hzua2         275 DGSISLIGTDPKNH----PQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL  349 (426)
T ss_dssp             TCEEEEEECCTTTC----TTTBTSEEEEEE-CSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred             CceEEEeecccccc----ccccceEeEEEe-cCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEe
Confidence            77888886543211    112234444444 366778889999987 455       34557899999865432211100


Q ss_pred             cceeeecccccCcceeEEEecCCCcceEEEe----cCCCeEEEEeecc
Q 018675          307 YKMLLKKEKAHDMDVNSVQWSPGERRLLASA----SDDGMIKIWELAN  350 (352)
Q Consensus       307 ~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~----~~Dg~i~iw~~~~  350 (352)
                      ..........|...|.+++|||||+++++|+    +.||.|+|||..+
T Consensus       350 ~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         350 PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             CHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred             ccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence            0000011234667899999999998887774    4689999999865

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.1e-21  Score=176.09  Aligned_cols=293  Identities=8%  Similarity=-0.052  Sum_probs=180.6

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE-E
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL-A   90 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~   90 (352)
                      +.+.++..| ..+..++|+|+      ++++++++.|+++++||+.+.+......-.....|.+.+.+.+|+|||++| +
T Consensus        53 ~v~~~~~~g-~~~~~v~fSpD------G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~v  125 (432)
T d1qksa2          53 EIKTVLDTG-YAVHISRLSAS------GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA  125 (432)
T ss_dssp             CEEEEEECS-SCEEEEEECTT------SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             cEEEEEeCC-CCeeEEEECCC------CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEE
Confidence            456677766 46999999997      689999999999999998775421111111123466777888899999975 7


Q ss_pred             EEeCCCcEEEEEccCCceeeeEeecc-----------ccCCeeEEEECCCCcEE-EEeeCCCcEEEEecCCCCeeEEEEE
Q 018675           91 TASFDATTCIWEDVGGDYECVATLEG-----------HENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVSV  158 (352)
Q Consensus        91 s~~~d~~i~i~~~~~~~~~~~~~~~~-----------h~~~v~~v~~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~  158 (352)
                      ++..++++++||..+++.  +..+..           +......+.++|++..+ ++...++.+.+||......... ..
T Consensus       126 s~~~~~~v~i~d~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~-~~  202 (432)
T d1qksa2         126 GAYWPPQYVIMDGETLEP--KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT-TE  202 (432)
T ss_dssp             EEEETTEEEEEETTTCCE--EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE-EE
T ss_pred             EcCCCCeEEEEeCccccc--eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceE-EE
Confidence            788899999999877643  323222           34456678899988764 5667789999999865543322 22


Q ss_pred             eecCccCeeEEEEcCCCCEEEEEeCCC-cEEEEecCCCCCCCceeEeeeec-cC--------------------------
Q 018675          159 LQGHAQDVKMVQWHPTMDVLFSCSYDN-TIKVWWAEDTDSDNWHCVQTISE-SN--------------------------  210 (352)
Q Consensus       159 ~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~-~~--------------------------  210 (352)
                      + .+......+.|+|+++++++++.++ .+.+++....     .....+.. ..                          
T Consensus       203 i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~  276 (432)
T d1qksa2         203 I-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-----KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD  276 (432)
T ss_dssp             E-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-----EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS
T ss_pred             E-cccCccccceECCCCCEEEEeccccceEEEeecccc-----eEEEEeccCccccccCcccceecCCCCceecccccCC
Confidence            2 2345677899999999887777654 5666654321     11111110 00                          


Q ss_pred             -------------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEec
Q 018675          211 -------------NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS  277 (352)
Q Consensus       211 -------------~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  277 (352)
                                   ..|...+....++|++..+++++.++..++|......                  .+.....++...
T Consensus       277 ~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------------------~~~~~~~sv~vp  338 (432)
T d1qksa2         277 DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------------------PEAEISGSVAVF  338 (432)
T ss_dssp             SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------------------SSHHHHTCEEEE
T ss_pred             ceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------------------CCCCeeeEEEEE
Confidence                         1122233334444444444444444444444321000                  000001112222


Q ss_pred             CCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEec----CCCeEEEEeecc
Q 018675          278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASAS----DDGMIKIWELAN  350 (352)
Q Consensus       278 ~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~----~Dg~i~iw~~~~  350 (352)
                      +...+++++.|+.+++|+..+.            .....|...+.+++|||||+++++|..    .||.|+|||..+
T Consensus       339 Dg~~la~~s~d~~~k~w~~~~~------------~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T  403 (432)
T d1qksa2         339 DIKAMTGDGSDPEFKTLPIAEW------------AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT  403 (432)
T ss_dssp             EGGGCCCSSSCCCEEEECHHHH------------HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             echhhcccccCCceEecccccc------------cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCC
Confidence            2346888888999998844210            112356678999999999987766653    468899999654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=3.1e-22  Score=174.46  Aligned_cols=246  Identities=8%  Similarity=-0.001  Sum_probs=171.7

Q ss_pred             CCccceEEEEEccCCCCCCCccEEEEeeCCC--eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCC
Q 018675           19 GHTDRVWSLAWKPTAGVDGVAPVFASCSGDK--TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDA   96 (352)
Q Consensus        19 gH~~~V~~i~~~p~~~~~~~~~~l~s~s~D~--~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~   96 (352)
                      +|...|.+++|+|+      ++.|++++.|.  .|++|+..++..    .. + ..|...|.+++|+|+|++|++++.++
T Consensus        40 ~~~~~v~~~~~spD------g~~l~~~~~~~g~~v~v~d~~~~~~----~~-~-~~~~~~v~~~~~spdg~~l~~~~~~~  107 (360)
T d1k32a3          40 PEPLRIRYVRRGGD------TKVAFIHGTREGDFLGIYDYRTGKA----EK-F-EENLGNVFAMGVDRNGKFAVVANDRF  107 (360)
T ss_dssp             SCCSCEEEEEECSS------SEEEEEEEETTEEEEEEEETTTCCE----EE-C-CCCCCSEEEEEECTTSSEEEEEETTS
T ss_pred             cCCCCEEEEEECCC------CCEEEEEEcCCCCEEEEEECCCCcE----EE-e-eCCCceEEeeeecccccccceecccc
Confidence            79999999999997      57888776553  899999987642    11 1 34788999999999999999999999


Q ss_pred             cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEee----------CCCcEEEEecCCCCeeEEEEEeecCccCe
Q 018675           97 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG----------RDKSVWIWEVMPGNEFECVSVLQGHAQDV  166 (352)
Q Consensus        97 ~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~~~h~~~v  166 (352)
                      .+.+|+..++.  ....+..|...+.+++|+|+|++|+.++          .++.+++|++..+.    ...+..+...+
T Consensus       108 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~----~~~~~~~~~~~  181 (360)
T d1k32a3         108 EIMTVDLETGK--PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAATTENSHD  181 (360)
T ss_dssp             EEEEEETTTCC--EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----EEECSCSSSBE
T ss_pred             ccccccccccc--eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc----eeeeccccccc
Confidence            99999987764  3455677888999999999999988543          45578999986543    22334566678


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEecCCCCCC--CceeEeeeec--------------------------------cCCC
Q 018675          167 KMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSD--NWHCVQTISE--------------------------------SNNG  212 (352)
Q Consensus       167 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~~~--------------------------------~~~~  212 (352)
                      ..+.|+|+++.|++++.++.+.+|+.......  .......+..                                ....
T Consensus       182 ~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  261 (360)
T d1k32a3         182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV  261 (360)
T ss_dssp             EEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC
T ss_pred             ccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeeccc
Confidence            88999999999999999999999965321100  0000000000                                0000


Q ss_pred             CcccEEEEEEcCC-------------CCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCC
Q 018675          213 HSSTIWALSFNAK-------------GDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSRE  279 (352)
Q Consensus       213 h~~~i~~l~~~~~-------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  279 (352)
                      .......+...++             +.++++++.++.+++||+...+.            ..    +...+.+++|+|+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------~~----~~~~v~~~~~SpD  325 (360)
T d1k32a3         262 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV------------TE----VKNNLTDLRLSAD  325 (360)
T ss_dssp             CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE------------EE----EEEEEEEEEECTT
T ss_pred             CcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE------------EE----ecCCcCEEEECCC
Confidence            1112222332222             23456677788999998753221            11    2234778999998


Q ss_pred             c-eEEecCCCCeEEEEEccC
Q 018675          280 G-IIASGAADDSVQFFVESK  298 (352)
Q Consensus       280 ~-~~~s~~~d~~v~~~~~~~  298 (352)
                      + +|++++.||.+++|+...
T Consensus       326 G~~l~~~~~Dg~i~v~d~~~  345 (360)
T d1k32a3         326 RKTVMVRKDDGKIYTFPLEK  345 (360)
T ss_dssp             SCEEEEEETTSCEEEEESSC
T ss_pred             CCEEEEEECCCeEEEEECCC
Confidence            7 899999999999997654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=2.6e-19  Score=151.75  Aligned_cols=265  Identities=11%  Similarity=0.159  Sum_probs=177.1

Q ss_pred             EEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE-EEEeCCCcEEEEEccCCceeeeEeeccccC
Q 018675           41 VFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEGHEN  119 (352)
Q Consensus        41 ~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~  119 (352)
                      .+++.+.|++|.+||+.+++....    +.  ....+..++|+|||++| ++++.++.|.+||..+++  .+..+..+. 
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~----i~--~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~--~~~~~~~~~-   74 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTAT----IP--VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--VIATVPAGS-   74 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE----EE--CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--EEEEEECSS-
T ss_pred             EEEEECCCCEEEEEECCCCeEEEE----EE--CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--eeeeeeccc-
Confidence            456778999999999988753222    21  23457889999999977 566788999999987764  455565554 


Q ss_pred             CeeEEEECCCCcEE-EEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE-EEeCCCcEEEEecCCCCC
Q 018675          120 EVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF-SCSYDNTIKVWWAEDTDS  197 (352)
Q Consensus       120 ~v~~v~~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~iw~~~~~~~  197 (352)
                      .+..+.|++++..+ +++..++.+.+|+.....   ....+.. .....++.++|++..++ ++..++.+.+|+....  
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~--  148 (301)
T d1l0qa2          75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT---VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK--  148 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--
T ss_pred             cccccccccccccccccccccceeeecccccce---eeeeccc-cccceEEEeecCCCeeeeeeccccceeeeecccc--
Confidence            56889999998864 556677899999986543   2333433 34677899999998765 5556778888865432  


Q ss_pred             CCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC-CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEe
Q 018675          198 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD-LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHW  276 (352)
Q Consensus       198 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  276 (352)
                         .....+.     +...+..+.++|++.++++++.+ +.+.+|+......           ....  .....+..+.+
T Consensus       149 ---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~--~~~~~~~~~~~  207 (301)
T d1l0qa2         149 ---AVINTVS-----VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-----------IDTV--KVEAAPSGIAV  207 (301)
T ss_dssp             ---EEEEEEE-----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-----------EEEE--ECSSEEEEEEE
T ss_pred             ---ceeeecc-----cCCCceEEEeeccccceeeecccccccccccccceee-----------eecc--cccCCcceeec
Confidence               2222222     23457789999999988877765 5566665432111           1111  12234556677


Q ss_pred             cCCc-eE-Ee--cCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeeccC
Q 018675          277 SREG-II-AS--GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELANT  351 (352)
Q Consensus       277 ~~~~-~~-~s--~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~~  351 (352)
                      ++++ .+ ++  ...++.+.+|+.....         ++... .+...+.+++|+||+++++++++.|++|+|||+++.
T Consensus       208 ~~~g~~~~v~~~~~~~~~v~v~D~~t~~---------~~~~~-~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         208 NPEGTKAYVTNVDKYFNTVSMIDTGTNK---------ITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             CTTSSEEEEEEECSSCCEEEEEETTTTE---------EEEEE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             cccccccccccccceeeeeeeeecCCCe---------EEEEE-cCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            7765 22 22  2445789999764321         12222 233568999999999888889999999999998653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=2.7e-20  Score=166.81  Aligned_cols=286  Identities=12%  Similarity=0.046  Sum_probs=174.4

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEee---cc
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL---EG  116 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~---~~  116 (352)
                      .++++.+.|++|+|||..+++.+...    . .| ..+..++|||||++|++++.|+++++||..+++......+   .+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l----~-~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~  106 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVI----D-TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE  106 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEE----E-CC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEE----e-CC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCC
Confidence            46788899999999999987644332    1 23 4689999999999999999999999999887754433333   35


Q ss_pred             ccCCeeEEEECCCCcEE-EEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCE-EEEEeCCCcEEEEecCC
Q 018675          117 HENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAED  194 (352)
Q Consensus       117 h~~~v~~v~~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~i~iw~~~~  194 (352)
                      |.+.+.++.|+|+|+++ +++..++++++||......   ......|...+....+.+++.. .++++.|+...++....
T Consensus       107 ~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~  183 (426)
T d1hzua2         107 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP---KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  183 (426)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE---EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce---eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC
Confidence            66667788889999986 5556899999999876543   3344444444444444444332 23344444443333222


Q ss_pred             CC---------CCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEcCCccccccCCCCccceeeEEee
Q 018675          195 TD---------SDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQSGDGYASWRHLCTIS  264 (352)
Q Consensus       195 ~~---------~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  264 (352)
                      ..         .... ....     .++...+..+.|+|++++++++. .+..+.+++....+.........        
T Consensus       184 ~~~i~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--------  249 (426)
T d1hzua2         184 TGKVLLVNYKDIDNL-TVTS-----IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK--------  249 (426)
T ss_dssp             TTEEEEEECSSSSSC-EEEE-----EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSS--------
T ss_pred             CCeEEEEEeccccce-eeEE-----eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCC--------
Confidence            11         0000 0111     14567788999999999877765 56678888765332211000000        


Q ss_pred             cccCcceEEEEecCCc--eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEE------E
Q 018675          265 GYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLA------S  336 (352)
Q Consensus       265 ~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~------s  336 (352)
                      ..+............+  ..++.+.|+.+..+......... . .........+|...+..++|+|+++++.+      +
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~-~-~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s  327 (426)
T d1hzua2         250 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ-Y-AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD  327 (426)
T ss_dssp             CCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT-T-BTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSS
T ss_pred             cccccceeeeecCCCCceEEeccCCCceEEEeecccccccc-c-cceEeEEEecCCCceeEEEcCCCCceEEEeecCCCC
Confidence            0011111111111222  23345567777777543322111 1 11234456789999999999999986443      5


Q ss_pred             ecCCCeEEEEeecc
Q 018675          337 ASDDGMIKIWELAN  350 (352)
Q Consensus       337 ~~~Dg~i~iw~~~~  350 (352)
                      ++.|++|+|||+++
T Consensus       328 ~~~~~tv~vwd~~t  341 (426)
T d1hzua2         328 ARISQSVAVFDLKN  341 (426)
T ss_dssp             HHHHTCEEEEETTC
T ss_pred             cccCCEEEEEECCC
Confidence            67789999999865

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.7e-19  Score=155.33  Aligned_cols=290  Identities=11%  Similarity=0.130  Sum_probs=183.1

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEE-eCCCcEEEEEccCCceeee-Eeeccc
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATA-SFDATTCIWEDVGGDYECV-ATLEGH  117 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~d~~i~i~~~~~~~~~~~-~~~~~h  117 (352)
                      ..+++++.|++|++|++.....+.. ...  ..|.+.+..++|+|||++|+++ ..|+.|.+|+......... .....+
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~-~~~--~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTL-TQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEE-EEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEE-EEE--EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence            3568888999999999876543221 222  2367889999999999988554 4589999998765432211 111234


Q ss_pred             cCCeeEEEECCCCcEEEEeeC-CCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-CCcEEEEecCCC
Q 018675          118 ENEVKSVSWNASGTLLATCGR-DKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDT  195 (352)
Q Consensus       118 ~~~v~~v~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~  195 (352)
                      ...+..++|+|+|++|++++. ++++.+|+....... .......+...+.++.++|+++.++.++. +..+.+|+....
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV-GVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE-EEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeeccccccce-ecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            456788999999999888875 678999987544322 23334456667888999999998887775 456888876543


Q ss_pred             CCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEcCCccccccCCCCccceeeEEee---c--ccCc
Q 018675          196 DSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQSGDGYASWRHLCTIS---G--YHDR  269 (352)
Q Consensus       196 ~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~--~~~~  269 (352)
                      ...........   ..........+.|++++.++.... ..+...+++.......       ........   .  ....
T Consensus       161 ~~~~~~~~~~~---~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  230 (333)
T d1ri6a_         161 GHLVAQDPAEV---TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN-------IECVQTLDMMPENFSDTR  230 (333)
T ss_dssp             SCEEEEEEEEE---ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC-------CEEEEEEECSCTTCCSCC
T ss_pred             Ccceeeeceee---eeecCCCccEEEEeccceeEEeeccccCceEEEeecccccc-------eeeeeeeeeeecCCCccc
Confidence            22111111111   112345567899999998876554 5667788875422110       00000110   0  0122


Q ss_pred             ceEEEEecCCc--eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEe
Q 018675          270 TIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       270 ~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      ....+.+++++  .++++..++.+.+|........     .. ......+...+.+++|+|||+.++++++.++.|+||+
T Consensus       231 ~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         231 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSV-----LS-KEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC-----EE-EEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             cceeEEEecccCceeeecccCCeEEEEEEcCCCCE-----EE-EEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            34455666665  5666777888888865432111     11 1112234456889999999998888888889999997


Q ss_pred             ec
Q 018675          348 LA  349 (352)
Q Consensus       348 ~~  349 (352)
                      +.
T Consensus       305 id  306 (333)
T d1ri6a_         305 IV  306 (333)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=1.4e-18  Score=155.75  Aligned_cols=189  Identities=9%  Similarity=-0.039  Sum_probs=134.5

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEee---cc
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATL---EG  116 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~---~~  116 (352)
                      -++++.+.|++|.|||..+++.+..    +. .+ ..+..++|||||+++++++.|+++.+||..+++......+   .+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~----~~-~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~  106 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTV----LD-TG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE  106 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEE----EE-CS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEE----Ee-CC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC
Confidence            3568999999999999988764322    22 13 3689999999999999999999999999877654333332   35


Q ss_pred             ccCCeeEEEECCCCcEE-EEeeCCCcEEEEecCCCCeeEEEEEeec-----------CccCeeEEEEcCCCCEE-EEEeC
Q 018675          117 HENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGNEFECVSVLQG-----------HAQDVKMVQWHPTMDVL-FSCSY  183 (352)
Q Consensus       117 h~~~v~~v~~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----------h~~~v~~~~~~~~~~~l-~s~~~  183 (352)
                      |.+.+.+..|+|||++| ++++.++++++||...+....   .+..           +......+.++|++..+ ++...
T Consensus       107 ~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~  183 (432)
T d1qksa2         107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK---IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  183 (432)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE---EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccccee---eeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc
Confidence            56667777788999975 788889999999987665332   2222           23345567888988765 55667


Q ss_pred             CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEcCCc
Q 018675          184 DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-DLTIKIWGADI  245 (352)
Q Consensus       184 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~-dg~i~iwd~~~  245 (352)
                      ++.+.+|+..+...   .....+     .++..+..+.|+|+|+++++++. ++.+.++|.+.
T Consensus       184 ~~~i~~~d~~~~~~---~~~~~i-----~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         184 TGKILLVDYTDLNN---LKTTEI-----SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             TTEEEEEETTCSSE---EEEEEE-----ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             CCeEEEEEccCCCc---ceEEEE-----cccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence            88999997654321   111222     24566889999999998776664 56788888754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=3e-18  Score=147.35  Aligned_cols=272  Identities=12%  Similarity=0.063  Sum_probs=164.3

Q ss_pred             cEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE-EEEeCCCcEEEEEccCCceeeeEeeccc-
Q 018675           40 PVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEGH-  117 (352)
Q Consensus        40 ~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~i~~~~~~~~~~~~~~~~h-  117 (352)
                      .++++++.|++|.+||..+.+.......   ..+...+.+++|+|||+++ ++++.++.|.+||..+++.  +..+..+ 
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~---~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~--~~~~~~~~   76 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITI---ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET--LGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC---TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE--EEEEECCB
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEEC---CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE--EEEEecCC
Confidence            4799999999999999988754322111   1233557889999999987 5667899999999887753  3333332 


Q ss_pred             ----cCCeeEEEECCCCcEEEEee------------CCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEE
Q 018675          118 ----ENEVKSVSWNASGTLLATCG------------RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSC  181 (352)
Q Consensus       118 ----~~~v~~v~~~~~~~~l~s~~------------~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  181 (352)
                          ...+..++|+|+++.++++.            .+..+.+||.....   ....+. +...+..++|+|++.+++++
T Consensus        77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~-~~~~~~~~~~s~dg~~l~~~  152 (337)
T d1pbyb_          77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS---RRKAFE-APRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE---EEEEEE-CCSSCCCEEECTTSSCEEEE
T ss_pred             CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe---EEEecc-ccCCceEEEEcCCCCEEEEE
Confidence                23456899999999988776            35678888876543   333333 34467889999999999888


Q ss_pred             eCCCcEEEEecCCCCCCCceeEeeeeccC-------------------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEc
Q 018675          182 SYDNTIKVWWAEDTDSDNWHCVQTISESN-------------------NGHSSTIWALSFNAKGDKLVSCSDDLTIKIWG  242 (352)
Q Consensus       182 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-------------------~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd  242 (352)
                      +.+  +.+|+....     .....+....                   ..+...+.......+......+..++.+.+|+
T Consensus       153 ~~~--~~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (337)
T d1pbyb_         153 GRD--LHVMDPEAG-----TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             SSS--EEEEETTTT-----EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             cCC--cceeeeecC-----cEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE
Confidence            654  667865432     1111111000                   00000111111111222222233344566665


Q ss_pred             CCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCccee
Q 018675          243 ADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVN  322 (352)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  322 (352)
                      ......           .......+........+.+++..+.+ .++.+++|+......         +.. ..+...+.
T Consensus       226 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~d~~~~~~---------~~~-~~~~~~~~  283 (337)
T d1pbyb_         226 LETGEM-----------AMREVRIMDVFYFSTAVNPAKTRAFG-AYNVLESFDLEKNAS---------IKR-VPLPHSYY  283 (337)
T ss_dssp             TTTCCE-----------EEEEEEECSSCEEEEEECTTSSEEEE-EESEEEEEETTTTEE---------EEE-EECSSCCC
T ss_pred             cCCCcE-----------EEEEecCCCcceEEEEecccceEEEE-ccccEEEEECCCCcE---------EEE-EcCCCCEE
Confidence            432111           11111224445666677776644333 258899997654221         111 13456789


Q ss_pred             EEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          323 SVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       323 ~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +++|+|||+. |++++.|+.|+|||.++
T Consensus       284 ~~~~s~dG~~-l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         284 SVNVSTDGST-VWLGGALGDLAAYDAET  310 (337)
T ss_dssp             EEEECTTSCE-EEEESBSSEEEEEETTT
T ss_pred             EEEECCCCCE-EEEEeCCCcEEEEECCC
Confidence            9999999985 56788999999999875

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=3.5e-18  Score=147.46  Aligned_cols=269  Identities=5%  Similarity=-0.073  Sum_probs=156.2

Q ss_pred             ccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE-EEEeCCCcEEEEEccCCceeeeEeecc-
Q 018675           39 APVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL-ATASFDATTCIWEDVGGDYECVATLEG-  116 (352)
Q Consensus        39 ~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~i~~~~~~~~~~~~~~~~-  116 (352)
                      +++|++++.|++|.+||+.+++....    +...|...+.+++|+|||+++ +++..++.|.+||..+++.  +..+.. 
T Consensus         8 ~~~l~~~~~~~~v~v~D~~t~~~~~t----~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~--~~~~~~~   81 (346)
T d1jmxb_           8 HEYMIVTNYPNNLHVVDVASDTVYKS----CVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN--TFHANLS   81 (346)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEE----EECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEESC
T ss_pred             CcEEEEEcCCCEEEEEECCCCCEEEE----EEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee--eeeeccc
Confidence            68999999999999999988753322    222244567899999999986 5566789999999887643  222221 


Q ss_pred             -----ccCCeeEEEECCCCcEEEEee------------CCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE
Q 018675          117 -----HENEVKSVSWNASGTLLATCG------------RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF  179 (352)
Q Consensus       117 -----h~~~v~~v~~~~~~~~l~s~~------------~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  179 (352)
                           +...+..++|+|+|++++.++            .+..+.+|+...+.....+.... ....+..+.+++++..++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee-ccCceEEEEecCCCEEEE
Confidence                 122466899999999887765            45677788765443322222211 123345556666666554


Q ss_pred             EEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCE--------------------------EEEEe
Q 018675          180 SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDK--------------------------LVSCS  233 (352)
Q Consensus       180 s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~--------------------------l~s~~  233 (352)
                      +   +..+.+|+.....     ....+..     ......+.++|++..                          ++++.
T Consensus       161 ~---~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (346)
T d1jmxb_         161 A---GPDIYKMDVKTGK-----YTVALPL-----RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD  227 (346)
T ss_dssp             E---SSSEEEECTTTCC-----EEEEECS-----TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred             e---CCcceEEEccCCC-----EEEEEec-----CCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeecc
Confidence            3   3457777654321     1222210     011122233343332                          33334


Q ss_pred             CCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeee
Q 018675          234 DDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLK  312 (352)
Q Consensus       234 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~  312 (352)
                      .++.+.+|+.....           ........+...+....+++++ .++.. .++.+.+|+.....        .+..
T Consensus       228 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~d~~~~~--------~~~~  287 (346)
T d1jmxb_         228 LLYGYLSVDLKTGK-----------THTQEFADLTELYFTGLRSPKDPNQIYG-VLNRLAKYDLKQRK--------LIKA  287 (346)
T ss_dssp             EEEEEEEEETTTCC-----------EEEEEEEECSSCEEEEEECSSCTTEEEE-EESEEEEEETTTTE--------EEEE
T ss_pred             CCceEEEEECCCCc-----------eEEEEeecccceeEEEEEeCCCCEEEEe-cCCeEEEEECCCCc--------EEEE
Confidence            44445555543211           1111112244556666666654 44433 34678888654321        1111


Q ss_pred             cccccCcceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          313 KEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       313 ~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      .  .+...+.+++||||+++ |++++.|+.|+|||+++
T Consensus       288 ~--~~~~~~~~va~s~DG~~-l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         288 A--NLDHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             E--ECSSCCCEEEECSSSSC-EEEESBSSEEEEEETTT
T ss_pred             E--cCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECcc
Confidence            1  23346999999999985 56788999999999975

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.73  E-value=1e-14  Score=127.25  Aligned_cols=297  Identities=9%  Similarity=-0.051  Sum_probs=170.1

Q ss_pred             ecCCccceEEEEEccCCCCCCCccEEEEe-----eCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEE
Q 018675           17 LEGHTDRVWSLAWKPTAGVDGVAPVFASC-----SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLAT   91 (352)
Q Consensus        17 ~~gH~~~V~~i~~~p~~~~~~~~~~l~s~-----s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s   91 (352)
                      ..+|...+.+++++|+      ++.++..     +.++.|.+||..+++.....       ..+....++|+|||++|++
T Consensus        16 ~~~~~~p~~~~a~spd------g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-------~~~~~~~~a~SpDG~~l~v   82 (373)
T d2madh_          16 AGAADGPTNDEAPGAD------GRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-------NGGFLPNPVAAHSGSEFAL   82 (373)
T ss_pred             cccCCCCccccccCCC------CCEEEEEcccccCCCceEEEEECCCCCEEEEE-------eCCCCccEEEcCCCCEEEE
Confidence            3468889999999997      3454432     23457888888776543221       1223346899999999988


Q ss_pred             EeC----------CCcEEEEEccCCceeeeEeeccccCCe-------eEEEECCCCcEEEEe--eCCCcEEEEecCCCCe
Q 018675           92 ASF----------DATTCIWEDVGGDYECVATLEGHENEV-------KSVSWNASGTLLATC--GRDKSVWIWEVMPGNE  152 (352)
Q Consensus        92 ~~~----------d~~i~i~~~~~~~~~~~~~~~~h~~~v-------~~v~~~~~~~~l~s~--~~d~~v~vwd~~~~~~  152 (352)
                      ++.          ++.+.+||..+++.  ...+..+....       ..+.|++++..++..  ..++.+.+|+......
T Consensus        83 a~~~~~~~~~~~~~~~v~v~D~~t~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  160 (373)
T d2madh_          83 ASTSFSRIAKGKRTDYVEVFDPVTFLP--IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD  160 (373)
T ss_pred             EeecCCcccccccceEEEEEECCCCcE--EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE
Confidence            753          57799999877643  33343333332       456778888765544  3456778888654321


Q ss_pred             eEEEEEeecCccCeeEEEEcCCCCE-EEEEeCCCcEEEEecCCCCCCCceeEeeee--ccCCCCcccEEEEEEcCCCCEE
Q 018675          153 FECVSVLQGHAQDVKMVQWHPTMDV-LFSCSYDNTIKVWWAEDTDSDNWHCVQTIS--ESNNGHSSTIWALSFNAKGDKL  229 (352)
Q Consensus       153 ~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~--~~~~~h~~~i~~l~~~~~~~~l  229 (352)
                         .    .+.....++.++|++.. +++.+.|+.+.+|+......     .....  ....+.......+.+.+++. +
T Consensus       161 ---~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  227 (373)
T d2madh_         161 ---D----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA-----GAGLVGAMLTAAQNLLTQPAQANKSGR-I  227 (373)
T ss_pred             ---E----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee-----eEEEeeeccccCccceeeeEEECCCce-E
Confidence               1    22234567889998875 46888999999997654321     11111  11112223334456666654 4


Q ss_pred             EEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEec-----------CCceEEecCCCCeEEEEEccC
Q 018675          230 VSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS-----------REGIIASGAADDSVQFFVESK  298 (352)
Q Consensus       230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~~~s~~~d~~v~~~~~~~  298 (352)
                      +..+.++.+.+|+...............................+.++           ++..++....++.+.+|+...
T Consensus       228 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t  307 (373)
T d2madh_         228 VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV  307 (373)
T ss_pred             EEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC
Confidence            556678899999865322110000000000000000000111111222           233455566666777775432


Q ss_pred             CccccCcccceeeecccccCcceeEEEecCCCcc-eEEEecCCCeEEEEeeccC
Q 018675          299 DDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR-LLASASDDGMIKIWELANT  351 (352)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-~l~s~~~Dg~i~iw~~~~~  351 (352)
                      ..        .+ . ...+...+.+++|+|||++ ++++++.|++|+|||+.+.
T Consensus       308 ~~--------~~-~-~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg  351 (373)
T d2madh_         308 GQ--------TS-S-QISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             Cc--------EE-E-EecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            21        11 1 1235567899999999976 4679999999999999764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.70  E-value=2.3e-13  Score=114.43  Aligned_cols=244  Identities=13%  Similarity=0.143  Sum_probs=162.1

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEE-EEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVF-ASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLA   90 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l-~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~   90 (352)
                      +.+.++... +...+++|+|+      ++++ ++++.+++|++||+.+.+....    +. .+ ..+..++|+++++.++
T Consensus        23 ~~~~~i~~g-~~p~~va~spd------G~~l~v~~~~~~~i~v~d~~t~~~~~~----~~-~~-~~~~~~~~~~~~~~~~   89 (301)
T d1l0qa2          23 KVTATIPVG-SNPMGAVISPD------GTKVYVANAHSNDVSIIDTATNNVIAT----VP-AG-SSPQGVAVSPDGKQVY   89 (301)
T ss_dssp             EEEEEEECS-SSEEEEEECTT------SSEEEEEEGGGTEEEEEETTTTEEEEE----EE-CS-SSEEEEEECTTSSEEE
T ss_pred             eEEEEEECC-CCceEEEEeCC------CCEEEEEECCCCEEEEEECCCCceeee----ee-cc-cccccccccccccccc
Confidence            344455433 45788999997      4554 6778899999999987754322    11 12 3568899999998655


Q ss_pred             -EEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEE-EeeCCCcEEEEecCCCCeeEEEEEeecCccCeeE
Q 018675           91 -TASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLA-TCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKM  168 (352)
Q Consensus        91 -s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~  168 (352)
                       ++..++.+.+|+..+++  ....+. +...+.++.|+|++..++ ++..++.+.+|+.....   ....+. +......
T Consensus        90 ~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~  162 (301)
T d1l0qa2          90 VTNMASSTLSVIDTTSNT--VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA---VINTVS-VGRSPKG  162 (301)
T ss_dssp             EEETTTTEEEEEETTTTE--EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEE-CCSSEEE
T ss_pred             ccccccceeeecccccce--eeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccc---eeeecc-cCCCceE
Confidence             45566788899876653  344444 345678899999998764 55668889999986543   233333 3345788


Q ss_pred             EEEcCCCCEEEEEeCCCc-EEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe---CCCcEEEEcCC
Q 018675          169 VQWHPTMDVLFSCSYDNT-IKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS---DDLTIKIWGAD  244 (352)
Q Consensus       169 ~~~~~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~---~dg~i~iwd~~  244 (352)
                      +.++|++..++++..+.. +.+|+....     .....+.     ....+..+.+++++..++.++   .++.|++||..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~  232 (301)
T d1l0qa2         163 IAVTPDGTKVYVANFDSMSISVIDTVTN-----SVIDTVK-----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTT-----EEEEEEE-----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             EEeeccccceeeecccccccccccccce-----eeeeccc-----ccCCcceeeccccccccccccccceeeeeeeeecC
Confidence            999999998888877654 555543221     1122221     234567889999999876554   34689999975


Q ss_pred             ccccccCCCCccceeeEEeecccCcceEEEEecCCc-e-EEecCCCCeEEEEEccC
Q 018675          245 ITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-I-IASGAADDSVQFFVESK  298 (352)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~s~~~d~~v~~~~~~~  298 (352)
                      ..+           ....+.  ....+..++++|++ + +++++.++.|.+|+...
T Consensus       233 t~~-----------~~~~~~--~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         233 TNK-----------ITARIP--VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             TTE-----------EEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCe-----------EEEEEc--CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence            332           122222  23457889999987 3 46888899999997653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.6e-14  Score=122.23  Aligned_cols=248  Identities=9%  Similarity=0.060  Sum_probs=152.6

Q ss_pred             EEEEEeCCCcEEEEEccCC-ceeeeEeeccccCCeeEEEECCCCcEEEEe-eCCCcEEEEecCCCCeeEEEEEeecCccC
Q 018675           88 LLATASFDATTCIWEDVGG-DYECVATLEGHENEVKSVSWNASGTLLATC-GRDKSVWIWEVMPGNEFECVSVLQGHAQD  165 (352)
Q Consensus        88 ~l~s~~~d~~i~i~~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~h~~~  165 (352)
                      .+++++.|++|++|+.... ....+..+ .|.+.+..++|+|+|++|+++ ..|+.|.+|++..............+...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            3577789999999997543 33333333 577899999999999988555 45899999998655432222222234456


Q ss_pred             eeEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEcC
Q 018675          166 VKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-DLTIKIWGA  243 (352)
Q Consensus       166 v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~-dg~i~iwd~  243 (352)
                      +..++|+|++++|++++. ++.+.+|.......     ....  ....+...+.++.++|++++++.++. +..+.+|+.
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~-----~~~~--~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~  157 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-----VGVV--DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTV  157 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEE-----EEEE--EEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccc-----eecc--cccCCCccceEEEeeecceeeeccccccceeeEEEe
Confidence            778999999999988886 56788886543211     1111  11134456778899999999887774 457888875


Q ss_pred             CccccccCCCCccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCCccccCcccceee--ecccccCc
Q 018675          244 DITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLL--KKEKAHDM  319 (352)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~--~~~~~h~~  319 (352)
                      ......      ..................+.+++++  .+.+....+...++.......... ....+.  ........
T Consensus       158 ~~~~~~------~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~  230 (333)
T d1ri6a_         158 SDDGHL------VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE-CVQTLDMMPENFSDTR  230 (333)
T ss_dssp             CTTSCE------EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE-EEEEEECSCTTCCSCC
T ss_pred             ccCCcc------eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccccee-eeeeeeeeecCCCccc
Confidence            422110      0011111122233445667777765  344555566666765432211100 000000  11122345


Q ss_pred             ceeEEEecCCCcceEEEecCCCeEEEEeecc
Q 018675          320 DVNSVQWSPGERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       320 ~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      ....++++|+++.+++++..++.+.+|++..
T Consensus       231 ~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~  261 (333)
T d1ri6a_         231 WAADIHITPDGRHLYACDRTASLITVFSVSE  261 (333)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             cceeEEEecccCceeeecccCCeEEEEEEcC
Confidence            5678899999988888889999999998753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=1.1e-14  Score=124.60  Aligned_cols=211  Identities=12%  Similarity=0.144  Sum_probs=141.6

Q ss_pred             eeeeeecC--CccceEEEEEccCCCCCCCccEE-EEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCE
Q 018675           12 REIQTLEG--HTDRVWSLAWKPTAGVDGVAPVF-ASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKL   88 (352)
Q Consensus        12 ~~~~~~~g--H~~~V~~i~~~p~~~~~~~~~~l-~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~   88 (352)
                      +.+.++..  +...+.+++|+|+      ++++ ++++.|+.|.+||+.+++............+...+..++|+|+++.
T Consensus        22 ~~~~~i~~~~~~~~~~~i~~spD------g~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~   95 (337)
T d1pbyb_          22 AVDKVITIADAGPTPMVPMVAPG------GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT   95 (337)
T ss_dssp             EEEEEEECTTCTTCCCCEEECTT------SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSE
T ss_pred             eEEEEEECCCCCCCccEEEECCC------CCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcE
Confidence            44555543  4456789999997      4555 6777899999999998765443322222223445678999999999


Q ss_pred             EEEEe------------CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE--
Q 018675           89 LATAS------------FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE--  154 (352)
Q Consensus        89 l~s~~------------~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~--  154 (352)
                      ++++.            .+..+.+||..+++  ....+. +...+..+.|+|++.++++++.+  +.+||........  
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~  170 (337)
T d1pbyb_          96 LAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAFE-APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDK  170 (337)
T ss_dssp             EEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEEE-CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEE
T ss_pred             EEEeecCCcceeeeccccccceeeccccCCe--EEEecc-ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEe
Confidence            98776            35677888876653  333443 34568899999999999888755  5667754221000  


Q ss_pred             -------------------------------------------------------------EEEEeecCccCeeEEEEcC
Q 018675          155 -------------------------------------------------------------CVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus       155 -------------------------------------------------------------~~~~~~~h~~~v~~~~~~~  173 (352)
                                                                                   ....+..+......+.++|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (337)
T d1pbyb_         171 PIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP  250 (337)
T ss_dssp             CSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT
T ss_pred             ecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc
Confidence                                                                         0011122333455566777


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          174 TMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       174 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      ++..++.+  ++.+++||+...     ..+..+.     +...+.+++|+|+|++|++++.|+.|++||.+.
T Consensus       251 ~~~~~~~~--~~~i~v~d~~~~-----~~~~~~~-----~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         251 AKTRAFGA--YNVLESFDLEKN-----ASIKRVP-----LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             TSSEEEEE--ESEEEEEETTTT-----EEEEEEE-----CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             cceEEEEc--cccEEEEECCCC-----cEEEEEc-----CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            77776654  588999987543     3333332     345678999999999999999999999999753

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=2.2e-14  Score=124.04  Aligned_cols=279  Identities=13%  Similarity=0.016  Sum_probs=147.6

Q ss_pred             eCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe----------CCCcEEEEEccCCceeeeEee-
Q 018675           46 SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS----------FDATTCIWEDVGGDYECVATL-  114 (352)
Q Consensus        46 s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~i~i~~~~~~~~~~~~~~-  114 (352)
                      +.+.+|.+||..+++.+.+.       ..+....++|||||+.|++.+          .|+.|.+||..+++....... 
T Consensus        25 ~~~~~v~v~D~~tg~~~~~~-------~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~   97 (355)
T d2bbkh_          25 AAVTQQFVIDGEAGRVIGMI-------DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP   97 (355)
T ss_dssp             CSSEEEEEEETTTTEEEEEE-------EECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred             CCcCeEEEEECCCCcEEEEE-------ECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecC
Confidence            34678999999887543222       233445789999999887643          478899999877653322211 


Q ss_pred             ccc----cCCeeEEEECCCCcEEEEee--CCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEE
Q 018675          115 EGH----ENEVKSVSWNASGTLLATCG--RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIK  188 (352)
Q Consensus       115 ~~h----~~~v~~v~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~  188 (352)
                      ..+    ......+.|+|++.+++.++  .+..+.+|+....+..   ..+..+...   ..+.......++.+.|+...
T Consensus        98 ~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~dg~~~  171 (355)
T d2bbkh_          98 DAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK---RMLDVPDCY---HIFPTAPDTFFMHCRDGSLA  171 (355)
T ss_dssp             TCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE---EEEECCSEE---EEEEEETTEEEEEETTSCEE
T ss_pred             CcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEe---eEEecCCcc---eEeecCCcceEEEcCCCCEE
Confidence            111    12345789999999877664  5678899998655432   222222111   11111122333444555444


Q ss_pred             EEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccccCCCCccceeeEEe-eccc
Q 018675          189 VWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTI-SGYH  267 (352)
Q Consensus       189 iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~  267 (352)
                      ++..........   .........+...+....+.+++..++.++.++.+.+|++............. ...... ....
T Consensus       172 ~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~  247 (355)
T d2bbkh_         172 KVAFGTEGTPEI---THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEA-LTEAERADGWR  247 (355)
T ss_dssp             EEECCSSSCCEE---EECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEES-SCHHHHHTTEE
T ss_pred             EEEecCCCeEEE---EecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCC-cccceEeeeee
Confidence            443322211111   01111112333445556778888889999999999999876432211100000 000000 0000


Q ss_pred             CcceEEEEecCCc-eEEe----------cCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcc-eEE
Q 018675          268 DRTIFSVHWSREG-IIAS----------GAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERR-LLA  335 (352)
Q Consensus       268 ~~~i~~~~~~~~~-~~~s----------~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-~l~  335 (352)
                      ......+.+++++ .++.          ......+.+|+.....         .+... .+...+.+++|+||++. +++
T Consensus       248 p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~---------~~~~~-~~~~~~~~~a~spDG~~~l~v  317 (355)
T d2bbkh_         248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---------RLAKF-EMGHEIDSINVSQDEKPLLYA  317 (355)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEE-EEEEEECEEEECCSSSCEEEE
T ss_pred             ccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc---------EEEEe-cCCCCEEEEEEcCCCCeEEEE
Confidence            0011123334433 1111          1122356666543211         11111 23456899999999975 577


Q ss_pred             EecCCCeEEEEeeccC
Q 018675          336 SASDDGMIKIWELANT  351 (352)
Q Consensus       336 s~~~Dg~i~iw~~~~~  351 (352)
                      +++.|+.|+|||.+++
T Consensus       318 ~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         318 LSTGDKTLYIHDAESG  333 (355)
T ss_dssp             EETTTTEEEEEETTTC
T ss_pred             EECCCCEEEEEECCCC
Confidence            8899999999998654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.53  E-value=1.3e-12  Score=117.52  Aligned_cols=153  Identities=14%  Similarity=0.207  Sum_probs=103.6

Q ss_pred             EEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeC---------CC
Q 018675           26 SLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASF---------DA   96 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---------d~   96 (352)
                      .+.|.++      ++++..  .|+.+.+|+..+++............|...|.+..|||||+.|+.++.         ++
T Consensus        21 ~~~W~~d------~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~   92 (470)
T d2bgra1          21 SLRWISD------HEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (470)
T ss_dssp             CCEECSS------SEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             CCEeCCC------CEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCc
Confidence            4678876      355543  688999999988764321111111335678999999999999998753         45


Q ss_pred             cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEE------Eeec---------
Q 018675           97 TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS------VLQG---------  161 (352)
Q Consensus        97 ~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~------~~~~---------  161 (352)
                      .+.+||..+++.   ..+..+...+..+.|+|+|+.+|... ++.+.+|+...+.......      .+.+         
T Consensus        93 ~~~l~d~~~~~~---~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~  168 (470)
T d2bgra1          93 SYDIYDLNKRQL---ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (470)
T ss_dssp             EEEEEETTTTEE---CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             eEEEEECCCCcc---cccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeee
Confidence            678999887643   34667888999999999999998864 5679999986654322110      0011         


Q ss_pred             CccCeeEEEEcCCCCEEEEEeCCCc-EEEE
Q 018675          162 HAQDVKMVQWHPTMDVLFSCSYDNT-IKVW  190 (352)
Q Consensus       162 h~~~v~~~~~~~~~~~l~s~~~d~~-i~iw  190 (352)
                      .......+.|+|+++.++....|.. +..|
T Consensus       169 ~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             ecCCccccEECCCCCccceeEecCCcCceE
Confidence            1122345789999999998876543 4444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.53  E-value=1.7e-12  Score=111.01  Aligned_cols=214  Identities=11%  Similarity=0.053  Sum_probs=129.0

Q ss_pred             eeeeeec-CCccceEEEEEccCCCCCCCccE-EEEeeCCCeEEEEecCCCceeeeeeeee-ecceecceEEEEECCCCCE
Q 018675           12 REIQTLE-GHTDRVWSLAWKPTAGVDGVAPV-FASCSGDKTVRIWEQSASSRFWNCKAVL-EEMHTRTVRSCAWSPSGKL   88 (352)
Q Consensus        12 ~~~~~~~-gH~~~V~~i~~~p~~~~~~~~~~-l~s~s~D~~v~~w~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~   88 (352)
                      +.+.+++ .|...+.+++|+|+      +++ +++++.++.|.+||+.+++......... ...+...+..++|+|||++
T Consensus        29 ~~~~t~~~~~~~~p~~l~~spD------G~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~  102 (346)
T d1jmxb_          29 TVYKSCVMPDKFGPGTAMMAPD------NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE  102 (346)
T ss_dssp             EEEEEEECSSCCSSCEEEECTT------SSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSE
T ss_pred             CEEEEEEcCCCCCcceEEECCC------CCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCE
Confidence            4556665 46677889999997      345 4677789999999998876543322111 1123345678999999998


Q ss_pred             EEEEe------------CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCee---
Q 018675           89 LATAS------------FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEF---  153 (352)
Q Consensus        89 l~s~~------------~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~---  153 (352)
                      +++++            .+..+.+|+..++..............+..+.+++++..++++   ..+.+|++..+...   
T Consensus       103 l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  179 (346)
T d1jmxb_         103 VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVAL  179 (346)
T ss_dssp             EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEE
T ss_pred             EEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEE
Confidence            87765            4667888876554321111111112334445555555444432   22444443221100   


Q ss_pred             --------------------------------------------------------------EEEEEeecCccCeeEEEE
Q 018675          154 --------------------------------------------------------------ECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus       154 --------------------------------------------------------------~~~~~~~~h~~~v~~~~~  171 (352)
                                                                                    ........|...+..+.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (346)
T d1jmxb_         180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR  259 (346)
T ss_dssp             CSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred             ecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEE
Confidence                                                                          011122334555666777


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCc
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADI  245 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~  245 (352)
                      ++++..++... ++.+.+||....     +.+..+.     +...+.+++|+|||++|++++.||.|++||.+.
T Consensus       260 ~~~~~~~~~~~-~~~v~v~d~~~~-----~~~~~~~-----~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         260 SPKDPNQIYGV-LNRLAKYDLKQR-----KLIKAAN-----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             CSSCTTEEEEE-ESEEEEEETTTT-----EEEEEEE-----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             eCCCCEEEEec-CCeEEEEECCCC-----cEEEEEc-----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence            77776666554 456899976442     2233332     234688999999999999999999999999853

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.39  E-value=5e-11  Score=104.27  Aligned_cols=288  Identities=10%  Similarity=0.019  Sum_probs=159.1

Q ss_pred             EEEEeeCCCeEEEEecCCCceeeeeeeee-------------------------ecceecceEEEEECCCCCEEEEE-eC
Q 018675           41 VFASCSGDKTVRIWEQSASSRFWNCKAVL-------------------------EEMHTRTVRSCAWSPSGKLLATA-SF   94 (352)
Q Consensus        41 ~l~s~s~D~~v~~w~~~~~~~~~~~~~~~-------------------------~~~h~~~v~~~~~s~~~~~l~s~-~~   94 (352)
                      .|+|++.+|+|++|++.+.+.+.......                         ...|.-......++|||++|.+. ..
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            48888999999999987665443322100                         01122334445567899988555 56


Q ss_pred             CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcE--EEEeeCCCcE------------------EEEecCCCCeeE
Q 018675           95 DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL--LATCGRDKSV------------------WIWEVMPGNEFE  154 (352)
Q Consensus        95 d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~--l~s~~~d~~v------------------~vwd~~~~~~~~  154 (352)
                      ++.|.++|..+.+...+..+ .+...+..++|+|+++.  ++..+.+ .+                  ..+|......  
T Consensus        93 ~~rVavIDl~t~k~~~ii~i-P~g~gphgi~~spdg~t~YV~~~~~~-~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v--  168 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHI-PNVQAIHGLRLQKVPKTNYVFCNAEF-VIPQPNDGTDFSLDNSYTMFTAIDAETMDV--  168 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEEC-TTCCCEEEEEECCSSBCCEEEEEECS-CEESSCSSSCCCGGGEEEEEEEEETTTCSE--
T ss_pred             CCEEEEEECCCCcEeeEEec-CCCCCccceEEeccCCEEEEEeccCC-cccccCcccccccccccceEEeecCcccee--
Confidence            78999999887654433333 34567899999999984  4443333 23                  3345433222  


Q ss_pred             EEEEeecCccCeeEEEEcCCCCEEEEEeCCCc-E--------------EEEec---------------CCCC------CC
Q 018675          155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT-I--------------KVWWA---------------EDTD------SD  198 (352)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-i--------------~iw~~---------------~~~~------~~  198 (352)
                       ....... .....+.++|+++++++++.+.. +              .+.+.               ....      ..
T Consensus       169 -~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~  246 (441)
T d1qnia2         169 -AWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG  246 (441)
T ss_dssp             -EEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS
T ss_pred             -eEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc
Confidence             1111111 24567889999999888775531 1              11100               0000      00


Q ss_pred             CceeEeeeeccCCCCcccEEEEEEcCCCCEEE-EEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEec
Q 018675          199 NWHCVQTISESNNGHSSTIWALSFNAKGDKLV-SCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWS  277 (352)
Q Consensus       199 ~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  277 (352)
                      .......+..     ......+.++|||++++ ++..+++|.+||++.......... ..+.................|+
T Consensus       247 ~~~v~~~IPv-----gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~-~~~~~~~~~~~~glgplh~~fd  320 (441)
T d1qnia2         247 ESEFTRYIPV-----PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI-ELRDTIVAEPELGLGPLHTTFD  320 (441)
T ss_dssp             SCSSEEEECC-----BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS-CGGGGEEECCBCCSCEEEEEEC
T ss_pred             CCceEEEEeC-----CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccC-CcceEEEeecccccCcccceec
Confidence            0001112211     12234589999999875 567899999999864221111111 1111111111112223445677


Q ss_pred             CCc-eEEecCCCCeEEEEEccCCcc-ccCcccceeeec-----ccccCcceeEEEecCCCcceEEEe---cCCC
Q 018675          278 REG-IIASGAADDSVQFFVESKDDL-IDGPSYKMLLKK-----EKAHDMDVNSVQWSPGERRLLASA---SDDG  341 (352)
Q Consensus       278 ~~~-~~~s~~~d~~v~~~~~~~~~~-~~~~~~~~~~~~-----~~~h~~~i~~~~~sp~~~~~l~s~---~~Dg  341 (352)
                      +++ .+.+...|..|..|....... ........++.+     ..+|...+.+.+++|||++ |+++   |.|.
T Consensus       321 ~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~-l~s~~k~s~dr  393 (441)
T d1qnia2         321 GRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKW-LVVLSKFSKDR  393 (441)
T ss_dssp             SSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCE-EEEEESCCGGG
T ss_pred             CCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcE-EEecCcccccc
Confidence            777 467778899999997532100 001111112211     2588888899999999974 7788   5553

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=2e-11  Score=106.01  Aligned_cols=275  Identities=12%  Similarity=0.000  Sum_probs=141.1

Q ss_pred             EEeeCCCeEEEE--ecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe----------CCCcEEEEEccCCceee
Q 018675           43 ASCSGDKTVRIW--EQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS----------FDATTCIWEDVGGDYEC  110 (352)
Q Consensus        43 ~s~s~D~~v~~w--~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~i~i~~~~~~~~~~  110 (352)
                      +++..+++.++|  |..+++..    ..+   +......++|+|||+.|++.+          .|+.|.+||..+.+.  
T Consensus        38 ~~~~~~g~~~~~~~d~~~~~~~----~~~---~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~--  108 (368)
T d1mdah_          38 LPAYFAGTTENWVSCAGCGVTL----GHS---LGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--  108 (368)
T ss_dssp             ECTTTCSSEEEEEEETTTTEEE----EEE---EECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE--
T ss_pred             eeccCCCcceEEEEeCCCCcEE----EEE---eCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcE--
Confidence            334556665555  66655322    111   122234588999999888754          367799999876643  


Q ss_pred             eEeecccc-------CCeeEEEECCCCcEEEEee-CCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEe
Q 018675          111 VATLEGHE-------NEVKSVSWNASGTLLATCG-RDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS  182 (352)
Q Consensus       111 ~~~~~~h~-------~~v~~v~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  182 (352)
                      ...+..+.       .....+.|+|+|++|+.+. .++.+.+||+...+.   ......+.....   +......++..+
T Consensus       109 ~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~---~~~~~~~~v~~~  182 (368)
T d1mdah_         109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHI---HPGAAATHYLGS  182 (368)
T ss_dssp             EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCC---EEEETTEEECCC
T ss_pred             eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE---eEEeeccCcceE---ccCCCceEEEEc
Confidence            33332221       2234789999999887775 579999999876533   333332221111   111234566677


Q ss_pred             CCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccc---cCCCCcccee
Q 018675          183 YDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ---SGDGYASWRH  259 (352)
Q Consensus       183 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~  259 (352)
                      .|+.+..++........+..   .......+...+..+.+.+++..+.+.+  +.+.+++.......   ..........
T Consensus       183 ~Dg~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~  257 (368)
T d1mdah_         183 CPASLAASDLAAAPAAAGIV---GAQCTGAQNCSSQAAQANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRK  257 (368)
T ss_dssp             CTTSCEEEECCSSCCCCEEC---CCCSCTTSCBCSCCEEETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred             CCCCEEEEEecCCceeeeee---ecccccccccceeecccccCcEEEEecC--CCEEEEeecCCceEEEeecccccceee
Confidence            78888777665433221111   1111123334444567777776665443  44555544321110   0000000000


Q ss_pred             eEEeecccCcceEEEEecCCc--eEEec--------CCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCC
Q 018675          260 LCTISGYHDRTIFSVHWSREG--IIASG--------AADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPG  329 (352)
Q Consensus       260 ~~~~~~~~~~~i~~~~~~~~~--~~~s~--------~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~  329 (352)
                      ...... .....  +.+++++  .++..        .....+.+|+....        +. +... .+...+.+++|+||
T Consensus       258 ~~~~~~-~g~~~--~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~--------~~-~~~~-~~~~~~~~~a~spD  324 (368)
T d1mdah_         258 ADNFRS-AGFQM--VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG--------QT-SGPI-SNGHDSDAIIAAQD  324 (368)
T ss_dssp             HTTEEE-CSSSC--EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC--------CE-EECC-EEEEEECEEEECCS
T ss_pred             eeeecC-CCcee--EEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC--------cE-eEEe-cCCCceeEEEECCC
Confidence            000000 01111  2223322  22211        11123555544321        11 1111 23457899999999


Q ss_pred             Ccc-eEEEecCCCeEEEEeecc
Q 018675          330 ERR-LLASASDDGMIKIWELAN  350 (352)
Q Consensus       330 ~~~-~l~s~~~Dg~i~iw~~~~  350 (352)
                      ++. ++++++.|++|+|||...
T Consensus       325 G~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         325 GASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             SSCEEEEEETTTTEEEEEESSS
T ss_pred             CCEEEEEEeCCCCeEEEEECCC
Confidence            864 578889999999999865

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.35  E-value=3.9e-10  Score=97.48  Aligned_cols=253  Identities=8%  Similarity=-0.081  Sum_probs=143.0

Q ss_pred             eecceEEEEECCCCCEEEEEe-----CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEee----------
Q 018675           73 HTRTVRSCAWSPSGKLLATAS-----FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCG----------  137 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~-----~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------  137 (352)
                      +..++.+++++|||+.++...     .++.+.+||..+++  .+..+..+..  ..+.|+|+|++|++++          
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~--~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS--ILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCC--EEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccc
Confidence            567889999999999887542     33568888876664  4455555443  3789999999988875          


Q ss_pred             CCCcEEEEecCCCCeeEEEEEeecCccC-------eeEEEEcCCCCEEEEEe--CCCcEEEEecCCCCCCCceeEeeeec
Q 018675          138 RDKSVWIWEVMPGNEFECVSVLQGHAQD-------VKMVQWHPTMDVLFSCS--YDNTIKVWWAEDTDSDNWHCVQTISE  208 (352)
Q Consensus       138 ~d~~v~vwd~~~~~~~~~~~~~~~h~~~-------v~~~~~~~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~  208 (352)
                      .++.|.+||....+..   ..+..+...       ...+.|+|+++.++...  .++.+.+|+.....     ..     
T Consensus        95 ~~~~v~v~D~~t~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~-----  161 (373)
T d2madh_          95 RTDYVEVFDPVTFLPI---ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS-----DD-----  161 (373)
T ss_pred             cceEEEEEECCCCcEE---EEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe-----EE-----
Confidence            4578999998765432   223222222       23467788877655443  34567777543221     11     


Q ss_pred             cCCCCcccEEEEEEcCCCCE-EEEEeCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCceEEecCC
Q 018675          209 SNNGHSSTIWALSFNAKGDK-LVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREGIIASGAA  287 (352)
Q Consensus       209 ~~~~h~~~i~~l~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~  287 (352)
                         .+.....++.++|+++. +++.+.|+.+.+|+.........      ..................+.+++.++..+.
T Consensus       162 ---~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (373)
T d2madh_         162 ---QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG------LVGAMLTAAQNLLTQPAQANKSGRIVWPVY  232 (373)
T ss_pred             ---EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEE------EeeeccccCccceeeeEEECCCceEEEecC
Confidence               12234567889999875 46888999999998653221100      000000001111223345566667777778


Q ss_pred             CCeEEEEEccCCccccCcccce---eeecccccCcceeEEEecCCCcc---------eEEEecCCCeEEEEeeccC
Q 018675          288 DDSVQFFVESKDDLIDGPSYKM---LLKKEKAHDMDVNSVQWSPGERR---------LLASASDDGMIKIWELANT  351 (352)
Q Consensus       288 d~~v~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~i~~~~~sp~~~~---------~l~s~~~Dg~i~iw~~~~~  351 (352)
                      ++.+.++...............   ..............++++|++..         .+++...++.+.+||+...
T Consensus       233 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~  308 (373)
T d2madh_         233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG  308 (373)
T ss_pred             CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC
Confidence            8888887655432211000000   00000001122334455555443         2345667788999997643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.30  E-value=1.7e-09  Score=92.64  Aligned_cols=258  Identities=11%  Similarity=0.065  Sum_probs=138.3

Q ss_pred             eeeeeecCCccceEEEEEccCCCCCCCccEEEEe----------eCCCeEEEEecCCCceeeeeeeee--ecceecceEE
Q 018675           12 REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASC----------SGDKTVRIWEQSASSRFWNCKAVL--EEMHTRTVRS   79 (352)
Q Consensus        12 ~~~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~----------s~D~~v~~w~~~~~~~~~~~~~~~--~~~h~~~v~~   79 (352)
                      +.+.++..+.  +..++|+|+      ++.|+.+          +.|+.|++||..+.+.........  ..........
T Consensus        39 ~~~~~~~~g~--~~~~a~SpD------g~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~  110 (355)
T d2bbkh_          39 RVIGMIDGGF--LPNPVVADD------GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWM  110 (355)
T ss_dssp             EEEEEEEECS--SCEEEECTT------SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGG
T ss_pred             cEEEEEECCC--CCceEEcCC------CCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCce
Confidence            3444454443  336899997      3555543          458899999998875433221100  0011123356


Q ss_pred             EEECCCCCEEEEEeC--CCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEE
Q 018675           80 CAWSPSGKLLATASF--DATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS  157 (352)
Q Consensus        80 ~~~s~~~~~l~s~~~--d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  157 (352)
                      ++|+|+|+.++.+..  +..+.+|+..+++.  +..+..+....   .+.......++.+.|++..++............
T Consensus       111 ~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~  185 (355)
T d2bbkh_         111 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF--KRMLDVPDCYH---IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH  185 (355)
T ss_dssp             EEECTTSSEEEEEECSSSCEEEEEETTTTEE--EEEEECCSEEE---EEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred             EEEecCCCeeEEecCCCCceeeeeecCCCcE--eeEEecCCcce---EeecCCcceEEEcCCCCEEEEEecCCCeEEEEe
Confidence            789999998887754  56788898766542  33333221110   111112223333444444444332222111111


Q ss_pred             E---eecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeecc------CCCCcccEEEEEEcCCCCE
Q 018675          158 V---LQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES------NNGHSSTIWALSFNAKGDK  228 (352)
Q Consensus       158 ~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~------~~~h~~~i~~l~~~~~~~~  228 (352)
                      .   ...+...+....+.+.+..++.++.++.+.+|+.......   ........      ..........+.+++++..
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~  262 (355)
T d2bbkh_         186 TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK---FLPAVEALTEAERADGWRPGGWQQVAYHRALDR  262 (355)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE---ECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred             cccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE---EEeccCCcccceEeeeeeccceEEEEEeCCCCe
Confidence            0   1123334455667778888889999999999987653211   11100000      0000112234778888887


Q ss_pred             EEEEeCC----------CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc---eEEecCCCCeEEEEE
Q 018675          229 LVSCSDD----------LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG---IIASGAADDSVQFFV  295 (352)
Q Consensus       229 l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~s~~~d~~v~~~~  295 (352)
                      ++....+          +.|.+||....+.           ...+.  ....+..+.+++++   .++++..|+.|++|+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~-----------~~~~~--~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D  329 (355)
T d2bbkh_         263 IYLLVDQRDEWRHKTASRFVVVLDAKTGER-----------LAKFE--MGHEIDSINVSQDEKPLLYALSTGDKTLYIHD  329 (355)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCE-----------EEEEE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             EEEEeccCCceeecCCCCeEEEEeCCCCcE-----------EEEec--CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEE
Confidence            7665433          3688898653221           11221  23346788999876   356778899999997


Q ss_pred             ccC
Q 018675          296 ESK  298 (352)
Q Consensus       296 ~~~  298 (352)
                      ...
T Consensus       330 ~~t  332 (355)
T d2bbkh_         330 AES  332 (355)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.17  E-value=5.7e-08  Score=83.72  Aligned_cols=261  Identities=10%  Similarity=0.069  Sum_probs=136.5

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEEccC-CceeeeEeeccccCCeeEEEECCCCcE--EEEee-CCCcEEEEecCCC
Q 018675           75 RTVRSCAWSPSGKLLATASFDATTCIWEDVG-GDYECVATLEGHENEVKSVSWNASGTL--LATCG-RDKSVWIWEVMPG  150 (352)
Q Consensus        75 ~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~--l~s~~-~d~~v~vwd~~~~  150 (352)
                      ..+.-++|+|+++.|.+... +.+..|.... +....... .........+.++++++.  ++++. ..+++..+.+...
T Consensus        40 ~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~-~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEee-ecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            34567999999999877654 4566665433 22211111 112234566777888874  33332 2355555443221


Q ss_pred             CeeE-------------EEEE-eecCccCeeEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCCCceeEeeeeccCCCCcc
Q 018675          151 NEFE-------------CVSV-LQGHAQDVKMVQWHPTMDVLFSCSY-DNTIKVWWAEDTDSDNWHCVQTISESNNGHSS  215 (352)
Q Consensus       151 ~~~~-------------~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~  215 (352)
                      ....             .... .......+.++.|+|++++++++.. ...|.+|+.....  .......+..  .....
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g--~~~~~~~~~~--~~~g~  193 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG--EVELVGSVDA--PDPGD  193 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS--CEEEEEEEEC--SSTTC
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCC--ceeeccceee--cCCCC
Confidence            1110             0100 1111223568999999998887764 4567787644321  1111111111  12345


Q ss_pred             cEEEEEEcCCCCEEE-EEeCCCcEEEEcCCccccccCCCCccceeeEEee-------------cccCcceEEEEecCCc-
Q 018675          216 TIWALSFNAKGDKLV-SCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS-------------GYHDRTIFSVHWSREG-  280 (352)
Q Consensus       216 ~i~~l~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~-  280 (352)
                      ....+.|+|+++++. +.-.+++|.+|+.+.....      .........             .........+.++|++ 
T Consensus       194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~  267 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM------PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK  267 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC------EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred             ceEEEEECCCCceEEEeccCCCEEEEEEecCCCce------EEEEeeeeccccccccccccccccccCCccceEECCCCC
Confidence            678899999999875 4556889999987532110      000000000             0011223456778876 


Q ss_pred             eEEecC-C-----CCeEEEEEccCCccccCcccceeeecccccCcceeEEEecC-CCcceEEEecCCCeEEEEeecc
Q 018675          281 IIASGA-A-----DDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSP-GERRLLASASDDGMIKIWELAN  350 (352)
Q Consensus       281 ~~~s~~-~-----d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~~l~s~~~Dg~i~iw~~~~  350 (352)
                      +++++. .     ...+..+.........   ....+.........-.+++++| +|++++++...++.|.||++..
T Consensus       268 ~lyvsnr~~~~~~~~~i~~~~~~~~g~~~---~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         268 YMFASSRANKFELQGYIAGFKLRDCGSIE---KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECTTSCEE---EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EEEEEcccCCCccceEEEEEEecCCCcee---eEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            333321 1     1225445433211110   0111111122334567899998 7888888889999999998753

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.03  E-value=1.9e-07  Score=78.04  Aligned_cols=238  Identities=12%  Similarity=0.070  Sum_probs=138.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEE
Q 018675           76 TVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFEC  155 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  155 (352)
                      .+..++++|||+++++...+++|..++.. ++...   +......+.+++|.++|+++++...++.+..++.........
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~---~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQI---HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE---EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEE---EEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence            46778999999999999889988888644 33322   233456799999999999999888888888887654332111


Q ss_pred             EEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeee---eccCCCCcccEEEEEEcCCCCEEEEE
Q 018675          156 VSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTI---SESNNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       156 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                      .............+.+.+++.++++.+.++.+..++.......  ......   ...........+.+.++.+ .++++.
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ngi~~~~~-~l~~~~  181 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS--IWLEHPMLARSNSESVFPAANGLKRFGN-FLYVSN  181 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE--EEEECGGGSCSSTTCCSCSEEEEEEETT-EEEEEE
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcce--eEecCCccceeeccCcccccccccccCC-ceeeec
Confidence            1111223345778889999988888777887777665432110  000000   0011112234566766543 455566


Q ss_pred             eCCCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceee
Q 018675          233 SDDLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLL  311 (352)
Q Consensus       233 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~  311 (352)
                      +..+.|..++.......        .......  .......+++++++ ++++...++.|..+....+.        ..+
T Consensus       182 ~~~~~i~~~~~~~~~~~--------~~~~~~~--~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~--------~~~  243 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKP--------GEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST--------TII  243 (302)
T ss_dssp             TTTTEEEEEEBCTTSCB--------CCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE--------EEE
T ss_pred             CCCCeEEeccccccccc--------ccccccc--CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE--------EEE
Confidence            67788887765422111        0001111  12234457777776 45555667777777543211        111


Q ss_pred             ecccccCcceeEEEe---cCCCcceEEEec
Q 018675          312 KKEKAHDMDVNSVQW---SPGERRLLASAS  338 (352)
Q Consensus       312 ~~~~~h~~~i~~~~~---sp~~~~~l~s~~  338 (352)
                      ......-...++++|   +||++.++++.+
T Consensus       244 ~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         244 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             ECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            111222345789999   677777776643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.02  E-value=3e-09  Score=95.09  Aligned_cols=155  Identities=17%  Similarity=0.193  Sum_probs=105.3

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeE---eeccccCCeeEEEECCCCcEEEEeeC---------CCcEEEE
Q 018675           78 RSCAWSPSGKLLATASFDATTCIWEDVGGDYECVA---TLEGHENEVKSVSWNASGTLLATCGR---------DKSVWIW  145 (352)
Q Consensus        78 ~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~---~~~~h~~~v~~v~~~~~~~~l~s~~~---------d~~v~vw  145 (352)
                      ..+.|.++++++.  ..|+.+.+|+..+++...+.   .+..|...|.++.|+|||+.|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            3577999998775  45788999999887644322   33456678999999999999888754         4678899


Q ss_pred             ecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccC----CC---------
Q 018675          146 EVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN----NG---------  212 (352)
Q Consensus       146 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~----~~---------  212 (352)
                      |+..+.    ...+..+...+..+.|+|+++.++.. .++.+.+|+........   . +.....    .+         
T Consensus        98 d~~~~~----~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~---~-t~~~~~~~~~~g~~d~~~~~~  168 (470)
T d2bgra1          98 DLNKRQ----LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR---I-TWTGKEDIIYNGITDWVYEEE  168 (470)
T ss_dssp             ETTTTE----ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE---C-CSCCBTTTEEESBCCHHHHHH
T ss_pred             ECCCCc----ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceee---e-eeccCCCcccccccceeeeee
Confidence            987543    33466778889999999999998875 56788888765432110   0 000000    00         


Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCc-EEEEcC
Q 018675          213 HSSTIWALSFNAKGDKLVSCSDDLT-IKIWGA  243 (352)
Q Consensus       213 h~~~i~~l~~~~~~~~l~s~~~dg~-i~iwd~  243 (352)
                      .......+.|+|||++|+....|.+ ++.|.+
T Consensus       169 ~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             ecCCccccEECCCCCccceeEecCCcCceEEE
Confidence            1123345789999999998776543 665543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.85  E-value=1.2e-07  Score=81.47  Aligned_cols=254  Identities=9%  Similarity=-0.051  Sum_probs=133.9

Q ss_pred             eeeecCCccceEEEEEccCCCCCCCccEEEEee----------CCCeEEEEecCCCceeeeeeeee--ecceecceEEEE
Q 018675           14 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCS----------GDKTVRIWEQSASSRFWNCKAVL--EEMHTRTVRSCA   81 (352)
Q Consensus        14 ~~~~~gH~~~V~~i~~~p~~~~~~~~~~l~s~s----------~D~~v~~w~~~~~~~~~~~~~~~--~~~h~~~v~~~~   81 (352)
                      +.++.++...  .+.|+|+      +..++..+          .|++|++||..+.+.........  ..........++
T Consensus        59 ~~~~~~~~~~--~~a~spD------g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a  130 (368)
T d1mdah_          59 LGHSLGAFLS--LAVAGHS------GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG  130 (368)
T ss_dssp             EEEEEECTTC--EEEECTT------SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred             EEEEeCCCCC--cceECCC------CCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceE
Confidence            3344444433  5788987      45565543          47889999998876543322100  000111234689


Q ss_pred             ECCCCCEEEEEe-CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEE---
Q 018675           82 WSPSGKLLATAS-FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS---  157 (352)
Q Consensus        82 ~s~~~~~l~s~~-~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---  157 (352)
                      |+|||++|+++. .++.+.+||..+.+.  ...+..+.....   +......+++.+.|+++.++++..........   
T Consensus       131 ~SpDGk~l~va~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~  205 (368)
T d1mdah_         131 NCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ  205 (368)
T ss_dssp             ECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred             ECCCCCEEEEEeCCCCeEEEEECCCCcE--eEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecc
Confidence            999999988776 468999999877643  333333322211   11123456777888888888865433211110   


Q ss_pred             EeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccC------CCCcccEEEEEEcCCCCEEEE
Q 018675          158 VLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESN------NGHSSTIWALSFNAKGDKLVS  231 (352)
Q Consensus       158 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~------~~h~~~i~~l~~~~~~~~l~s  231 (352)
                      ....+...+..+.+.+++..+.+.  .+.+.+++.......   .........      .........+.++|++..+..
T Consensus       206 ~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v  280 (368)
T d1mdah_         206 CTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGAT---MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             SCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCE---EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             cccccccceeecccccCcEEEEec--CCCEEEEeecCCceE---EEeecccccceeeeeeecCCCceeEEEcCCCCEEEE
Confidence            111223334455666666544433  344445543322110   000000000      000111224678888776654


Q ss_pred             EeCC---------CcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc---eEEecCCCCeEEEEEccC
Q 018675          232 CSDD---------LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG---IIASGAADDSVQFFVESK  298 (352)
Q Consensus       232 ~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~s~~~d~~v~~~~~~~  298 (352)
                      ...+         ..|.+||....+..           ..+.  ....+..+.+++++   .++++..++.+++|+...
T Consensus       281 ~~~~~~~~~~~~~~~v~v~D~~t~~~~-----------~~~~--~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         281 LTVEHSRSCLAAAENTSSVTASVGQTS-----------GPIS--NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEE-----------ECCE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             EecCCCceeecCCceEEEEECCCCcEe-----------EEec--CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            4322         25888887543221           1111  12346678899876   356778899999997643

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.80  E-value=2.3e-05  Score=65.43  Aligned_cols=209  Identities=11%  Similarity=0.079  Sum_probs=107.2

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeC-------CCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSG-------DKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD   95 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~-------D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d   95 (352)
                      ..-+++|.|+      +.++++...       +++|..|+..++........ ........-..++|.++++.+.++...
T Consensus        19 g~EGpa~d~d------G~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~-~~~~~~g~P~Gl~~~~dg~~l~vad~~   91 (314)
T d1pjxa_          19 GAEGPVFDKN------GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-EVNGYGGIPAGCQCDRDANQLFVADMR   91 (314)
T ss_dssp             TCEEEEECTT------SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-EETTEECCEEEEEECSSSSEEEEEETT
T ss_pred             CCeEeEEeCC------CCEEEEECccccccccCCEEEEEECCCCcEEEEECC-ccccCCCcceeEEEeCCCCEEEEEECC
Confidence            3456788886      345554322       35677788766542111100 001112335679999999988887777


Q ss_pred             CcEEEEEccCCceeeeEe-ecccc-CCeeEEEECCCCcEEEEeeCC-------------CcEEEEecCCCCeeEEEEEee
Q 018675           96 ATTCIWEDVGGDYECVAT-LEGHE-NEVKSVSWNASGTLLATCGRD-------------KSVWIWEVMPGNEFECVSVLQ  160 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~-~~~h~-~~v~~v~~~~~~~~l~s~~~d-------------~~v~vwd~~~~~~~~~~~~~~  160 (352)
                      +.+...+..+........ ..+.. ...+.+.+.++|++.++-...             ..=++|.+........+.   
T Consensus        92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~---  168 (314)
T d1pjxa_          92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD---  168 (314)
T ss_dssp             TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE---
T ss_pred             CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEee---
Confidence            777777765442211111 01110 135789999999987764321             111344433222222111   


Q ss_pred             cCccCeeEEEEcCCCC-----EEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC
Q 018675          161 GHAQDVKMVQWHPTMD-----VLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD  235 (352)
Q Consensus       161 ~h~~~v~~~~~~~~~~-----~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d  235 (352)
                      .....-+.++|+|++.     +.++-+..+.|..|++.....  ..................-.+++.++|+++++....
T Consensus       169 ~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~--~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~  246 (314)
T d1pjxa_         169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK--IENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE--EEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccc--cceeeEEEEccccccccceeeEEecCCcEEEEEcCC
Confidence            1122345678888754     344555667777776532211  000000111111112234567777888777776667


Q ss_pred             CcEEEEcC
Q 018675          236 LTIKIWGA  243 (352)
Q Consensus       236 g~i~iwd~  243 (352)
                      +.|.+||.
T Consensus       247 g~I~~~dp  254 (314)
T d1pjxa_         247 SHIEVFGP  254 (314)
T ss_dssp             TEEEEECT
T ss_pred             CEEEEEeC
Confidence            77777753

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.76  E-value=4e-05  Score=65.38  Aligned_cols=261  Identities=9%  Similarity=0.047  Sum_probs=137.7

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEE--EEEeC-CC
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLL--ATASF-DA   96 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l--~s~~~-d~   96 (352)
                      ....+..|+++|+      +++|+++.. +.+..|.+...........   .........++++++++.+  +++.. .+
T Consensus        38 ~~~~~s~la~s~d------~~~ly~~~~-~~~~~~~i~~~~~~~~~~~---~~~~~~p~~v~~~~~~~~~~v~~a~~~~~  107 (365)
T d1jofa_          38 QDEPISWMTFDHE------RKNIYGAAM-KKWSSFAVKSPTEIVHEAS---HPIGGHPRANDADTNTRAIFLLAAKQPPY  107 (365)
T ss_dssp             TTCCCSEEEECTT------SSEEEEEEB-TEEEEEEEEETTEEEEEEE---EECCSSGGGGCTTSCCEEEEEEECSSTTC
T ss_pred             CCCCCCEEEEcCC------CCEEEEEeC-CcEEEEEEeCCCCeEEEee---ecCCCCcEEEEECCCCCEEEEEEecCCCC
Confidence            4455677999997      466766654 5677787664433222111   0011234556788888743  22221 23


Q ss_pred             cEEEEEcc-------------CCcee-eeEe-eccccCCeeEEEECCCCcEEEEeeC-CCcEEEEecCCCCeeEEEEEee
Q 018675           97 TTCIWEDV-------------GGDYE-CVAT-LEGHENEVKSVSWNASGTLLATCGR-DKSVWIWEVMPGNEFECVSVLQ  160 (352)
Q Consensus        97 ~i~i~~~~-------------~~~~~-~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~  160 (352)
                      ++..+...             .+... .... .......+.++.|+|+|+++++++. ...|.+|+..............
T Consensus       108 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~  187 (365)
T d1jofa_         108 AVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD  187 (365)
T ss_dssp             CEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecccee
Confidence            44333211             00000 0000 1112235789999999998777653 4578888765443333232222


Q ss_pred             --cCccCeeEEEEcCCCCEEEEEe-CCCcEEEEecCCCCCCCceeEeeeec----------cCCCCcccEEEEEEcCCCC
Q 018675          161 --GHAQDVKMVQWHPTMDVLFSCS-YDNTIKVWWAEDTDSDNWHCVQTISE----------SNNGHSSTIWALSFNAKGD  227 (352)
Q Consensus       161 --~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~----------~~~~h~~~i~~l~~~~~~~  227 (352)
                        ......+.+.|+|+++++.+.. .++.|.+|+.................          ....+......+.++|+|+
T Consensus       188 ~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~  267 (365)
T d1jofa_         188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK  267 (365)
T ss_dssp             CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred             ecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCC
Confidence              2234678899999999876655 47889999875433222222222211          1112334566789999999


Q ss_pred             EEEEEeC-C-----CcEEEEcCCccccccCCCCccceeeEEe-ecccCcceEEEEecC-Cc--eEEecCCCCeEEEEEcc
Q 018675          228 KLVSCSD-D-----LTIKIWGADITRMQSGDGYASWRHLCTI-SGYHDRTIFSVHWSR-EG--IIASGAADDSVQFFVES  297 (352)
Q Consensus       228 ~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~--~~~s~~~d~~v~~~~~~  297 (352)
                      +|.++.. +     +.|..|++....      .. .+..... ..........+++++ ++  ++++...++.|.+|...
T Consensus       268 ~lyvsnr~~~~~~~~~i~~~~~~~~g------~~-~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         268 YMFASSRANKFELQGYIAGFKLRDCG------SI-EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECTTS------CE-EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EEEEEcccCCCccceEEEEEEecCCC------ce-eeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            9887642 2     236666543110      00 0111111 011223455577776 44  45566677899998553

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.69  E-value=2.4e-05  Score=63.35  Aligned_cols=235  Identities=10%  Similarity=0.045  Sum_probs=134.3

Q ss_pred             ceEEEEECCCCCEEEEEe-CCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeE
Q 018675           76 TVRSCAWSPSGKLLATAS-FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFE  154 (352)
Q Consensus        76 ~v~~~~~s~~~~~l~s~~-~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  154 (352)
                      .-..++++++|++.++.. ..+.+..++.... ........+ ......+++++++.++++....+.+++++.....   
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~-~~~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~---   89 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST-GTTVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ---   89 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC-----CEEECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC---
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCc-eEEEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccce---
Confidence            447889999999776654 4456666543322 111222222 2346788999999988877776666665432221   


Q ss_pred             EEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC
Q 018675          155 CVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD  234 (352)
Q Consensus       155 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~  234 (352)
                      .+... ........+++.+++.++++-.....+..++.....    ......    .+ ......++++|+++++++...
T Consensus        90 ~~~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~----~~~~~~----~~-~~~p~~i~~~~~g~~~v~~~~  159 (260)
T d1rwia_          90 TVLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT----QTVLPF----TG-LNDPDGVAVDNSGNVYVTDTD  159 (260)
T ss_dssp             EECCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS----CEECCC----CS-CCSCCEEEECTTCCEEEEEGG
T ss_pred             eeeee-eeeeecccccccccceeEeeccccccccccccccce----eeeeee----cc-cCCcceeeecCCCCEeeeccc
Confidence            11111 122456788999988877766556666666433211    111111    11 123457899999999888888


Q ss_pred             CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eEEecCCCCeEEEEEccCCccccCcccceeeec
Q 018675          235 DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-IIASGAADDSVQFFVESKDDLIDGPSYKMLLKK  313 (352)
Q Consensus       235 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~  313 (352)
                      ++.|..++.+.....            .+..........+++++++ ++++...++.+..+.......       ...  
T Consensus       160 ~~~i~~~d~~~~~~~------------~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-------~~~--  218 (260)
T d1rwia_         160 NNRVVKLEAESNNQV------------VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-------TVL--  218 (260)
T ss_dssp             GTEEEEECTTTCCEE------------ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-------EEC--
T ss_pred             cccccccccccceee------------eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-------EEE--
Confidence            888999976532111            0111122345677777765 555566667777664432110       111  


Q ss_pred             ccccCcceeEEEecCCCcceEEEecCCCeEEEEe
Q 018675          314 EKAHDMDVNSVQWSPGERRLLASASDDGMIKIWE  347 (352)
Q Consensus       314 ~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~  347 (352)
                      ....-.....|++++++. ++++-..++.|+..+
T Consensus       219 ~~~~~~~P~~i~~d~~g~-l~vad~~~~rI~~i~  251 (260)
T d1rwia_         219 PFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLT  251 (260)
T ss_dssp             CCCSCCCEEEEEECTTCC-EEEEEGGGTEEEEEC
T ss_pred             ccCCCCCeEEEEEeCCCC-EEEEECCCCEEEEEe
Confidence            111223467899999885 777777777776554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.59  E-value=8.5e-06  Score=70.70  Aligned_cols=214  Identities=11%  Similarity=0.065  Sum_probs=113.0

Q ss_pred             CeeEEEECCCCcEEEEe-eCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCC--EEEEEeCCCcEEE-------
Q 018675          120 EVKSVSWNASGTLLATC-GRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMD--VLFSCSYDNTIKV-------  189 (352)
Q Consensus       120 ~v~~v~~~~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~i-------  189 (352)
                      ........|||++|+.. ..++.|.++|+...+..+.+.  ..+......++|+|+++  +++..+++. +.+       
T Consensus        73 ~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~--iP~g~gphgi~~spdg~t~YV~~~~~~~-v~~~~dg~~~  149 (441)
T d1qnia2          73 HISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITH--IPNVQAIHGLRLQKVPKTNYVFCNAEFV-IPQPNDGTDF  149 (441)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE--CTTCCCEEEEEECCSSBCCEEEEEECSC-EESSCSSSCC
T ss_pred             CcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEe--cCCCCCccceEEeccCCEEEEEeccCCc-ccccCccccc
Confidence            34444456899887544 577899999987654332221  23456788899999987  444444332 221       


Q ss_pred             -----------EecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCC-c--------------EEEEcC
Q 018675          190 -----------WWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDL-T--------------IKIWGA  243 (352)
Q Consensus       190 -----------w~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg-~--------------i~iwd~  243 (352)
                                 +|...     ......+.     -......+.++|+|+++++.+.+. .              +.+.+.
T Consensus       150 ~~~~~~~~~~~iD~~t-----~~v~~qI~-----v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~  219 (441)
T d1qnia2         150 SLDNSYTMFTAIDAET-----MDVAWQVI-----VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV  219 (441)
T ss_dssp             CGGGEEEEEEEEETTT-----CSEEEEEE-----ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEH
T ss_pred             ccccccceEEeecCcc-----ceeeEEEe-----cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCc
Confidence                       22111     11111111     012355689999999988776542 1              222211


Q ss_pred             Cc-------ccccc--CCC------CccceeeEEeecccCcceEEEEecCCc--eEEecCCCCeEEEEEccCCc-cccC-
Q 018675          244 DI-------TRMQS--GDG------YASWRHLCTISGYHDRTIFSVHWSREG--IIASGAADDSVQFFVESKDD-LIDG-  304 (352)
Q Consensus       244 ~~-------~~~~~--~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~-~~~~-  304 (352)
                      ..       .+...  ..+      .........+.  -......+..+|++  .++++..++++.+|+..+-. .++. 
T Consensus       220 p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IP--vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~  297 (441)
T d1qnia2         220 ERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIP--VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK  297 (441)
T ss_dssp             HHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEEC--CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS
T ss_pred             cceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEe--CCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc
Confidence            00       00000  000      00001111121  12335567888887  46788889999999865411 0111 


Q ss_pred             cccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       305 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                      ......+.-...........+|.+++. .+.|...|..|..|++.
T Consensus       298 ~~~~~~~~~~~~~glgplh~~fd~~g~-~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         298 IELRDTIVAEPELGLGPLHTTFDGRGN-AYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             SCGGGGEEECCBCCSCEEEEEECSSSE-EEEEETTTTEEEEEEHH
T ss_pred             CCcceEEEeecccccCcccceecCCce-EEEcccccceEEEeccc
Confidence            011111111111223456678999885 78999999999999974

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.59  E-value=5.5e-06  Score=68.88  Aligned_cols=206  Identities=8%  Similarity=-0.066  Sum_probs=125.4

Q ss_pred             CeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 018675          120 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDN  199 (352)
Q Consensus       120 ~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~  199 (352)
                      .+..+++.|+|+++++...+++|..|+..  .....   +......+.+++|.|+++++++...++.+..++...... .
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~--g~~~~---~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~-~  102 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD--GNQQI---HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG-T  102 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEE---EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS-C
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC--CCEEE---EEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc-c
Confidence            46789999999999999989988777732  22222   333446788999999999888888888887776543221 1


Q ss_pred             ceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcCCccccc--cCCCCccceeeEEeecccCcceEEEEec
Q 018675          200 WHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGADITRMQ--SGDGYASWRHLCTISGYHDRTIFSVHWS  277 (352)
Q Consensus       200 ~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~  277 (352)
                      .   ..+...  ......+.+.+.++++++++-+.++.+..++.+.....  ......    ..............+.++
T Consensus       103 ~---~~~~~~--~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ngi~~~  173 (302)
T d2p4oa1         103 V---ETLLTL--PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML----ARSNSESVFPAANGLKRF  173 (302)
T ss_dssp             E---EEEEEC--TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGG----SCSSTTCCSCSEEEEEEE
T ss_pred             e---eecccc--CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcc----ceeeccCccccccccccc
Confidence            1   111111  23356789999999999998888888877765422100  000000    000000011123445566


Q ss_pred             CCceEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          278 REGIIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       278 ~~~~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      .+..+++...++.+..+..........   ...    .........++|.++|. ++++...++.|..++.
T Consensus       174 ~~~l~~~~~~~~~i~~~~~~~~~~~~~---~~~----~~~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p  236 (302)
T d2p4oa1         174 GNFLYVSNTEKMLLLRIPVDSTDKPGE---PEI----FVEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAP  236 (302)
T ss_dssp             TTEEEEEETTTTEEEEEEBCTTSCBCC---CEE----EEESCCCSSEEEBTTCC-EEEECBTTCCEEEECT
T ss_pred             CCceeeecCCCCeEEeccccccccccc---ccc----ccCCCCCcceEECCCCC-EEEEEcCCCcEEEECC
Confidence            666777777888887776543222111   111    11223467899999986 7777777888887764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.54  E-value=0.00013  Score=59.46  Aligned_cols=241  Identities=13%  Similarity=0.195  Sum_probs=141.9

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeee-ecceecceEEEEECCCC-CEEEEE-eCCCcE
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVL-EEMHTRTVRSCAWSPSG-KLLATA-SFDATT   98 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~-~~l~s~-~~d~~i   98 (352)
                      ..=..|++.|+      +.++++-...+.|++|+.+.. ......... .......-..+++.++. ..+++. +.++.+
T Consensus        23 ~~P~gvavd~d------g~i~VaD~~n~rI~v~d~~G~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i   95 (279)
T d1q7fa_          23 TEPSGVAVNAQ------NDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI   95 (279)
T ss_dssp             SCEEEEEECTT------CCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred             CCccEEEEcCC------CCEEEEECCCCEEEEEeCCCC-EEEEecccCCCcccccccccccccccccccceeccCCcccc
Confidence            34568888886      467777667789999986532 111111100 00111123445555443 344433 234456


Q ss_pred             EEEEccCCceeeeEee-ccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEe--ecCccCeeEEEEcCCC
Q 018675           99 CIWEDVGGDYECVATL-EGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVL--QGHAQDVKMVQWHPTM  175 (352)
Q Consensus        99 ~i~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~  175 (352)
                      ..++.. +.  ....+ .........+++.+++.++++....+.+.+++.. +..   +..+  ..+......+++.+++
T Consensus        96 ~~~~~~-g~--~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~---~~~~g~~~~~~~~~~i~~d~~g  168 (279)
T d1q7fa_          96 QIYNQY-GQ--FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNV---LHKFGCSKHLEFPNGVVVNDKQ  168 (279)
T ss_dssp             EEECTT-SC--EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---EEEEECTTTCSSEEEEEECSSS
T ss_pred             cccccc-cc--ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cce---eecccccccccccceeeeccce
Confidence            665543 32  22222 2234567788999999988877777778777743 222   2222  2344566788888998


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEcCCccccccCCCC
Q 018675          176 DVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD-DLTIKIWGADITRMQSGDGY  254 (352)
Q Consensus       176 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~  254 (352)
                      ..+++....+.|.+|+....      .+.++.  ..+.......|++.++|+.+++-.. +++|.+|+.+- +       
T Consensus       169 ~i~v~d~~~~~V~~~d~~G~------~~~~~g--~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G-~-------  232 (279)
T d1q7fa_         169 EIFISDNRAHCVKVFNYEGQ------YLRQIG--GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-Q-------  232 (279)
T ss_dssp             EEEEEEGGGTEEEEEETTCC------EEEEES--CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-C-------
T ss_pred             eEEeeeccccceeeeecCCc------eeeeec--ccccccCCcccccccCCeEEEEECCCCcEEEEECCCC-C-------
Confidence            88888888889999975432      122221  2244556788999999998887543 45799997431 1       


Q ss_pred             ccceeeEEee-cccCcceEEEEecCCceEEecCCCCeEEEEEc
Q 018675          255 ASWRHLCTIS-GYHDRTIFSVHWSREGIIASGAADDSVQFFVE  296 (352)
Q Consensus       255 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~s~~~d~~v~~~~~  296 (352)
                          ....+. .........++..+++.++....+..|++|..
T Consensus       233 ----~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~  271 (279)
T d1q7fa_         233 ----LISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRY  271 (279)
T ss_dssp             ----EEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEEC
T ss_pred             ----EEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEe
Confidence                111111 11223467788888887776777888888843

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.42  E-value=4.3e-05  Score=61.78  Aligned_cols=193  Identities=13%  Similarity=0.059  Sum_probs=118.0

Q ss_pred             EEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEcc
Q 018675           25 WSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDV  104 (352)
Q Consensus        25 ~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~  104 (352)
                      .++++.|+      +.++++....+.+++++.......      ...........+++.++++++++-..+..+..++..
T Consensus        60 ~gvav~~~------g~i~v~d~~~~~i~~~~~~~~~~~------~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~  127 (260)
T d1rwia_          60 QGLAVDGA------GTVYVTDFNNRVVTLAAGSNNQTV------LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG  127 (260)
T ss_dssp             CCEEECTT------CCEEEEETTTEEEEECTTCSCCEE------CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             eEEEEcCC------CCEEEeeeeeceeeeeeeccceee------eeeeeeeecccccccccceeEeeccccccccccccc
Confidence            45666664      356666655566666554333211      111112456889999999988876666667666544


Q ss_pred             CCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCC
Q 018675          105 GGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD  184 (352)
Q Consensus       105 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  184 (352)
                      +.. .......+ ......+++.++++++++...++.|..++......   .............+++.+++.++++....
T Consensus       128 ~~~-~~~~~~~~-~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~---~~~~~~~~~~p~gi~~d~~g~l~vsd~~~  202 (260)
T d1rwia_         128 SKT-QTVLPFTG-LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ---VVLPFTDITAPWGIAVDEAGTVYVTEHNT  202 (260)
T ss_dssp             CSS-CEECCCCS-CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE---EECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred             cce-eeeeeecc-cCCcceeeecCCCCEeeecccccccccccccccee---eeeeccccCCCccceeeeeeeeeeeecCC
Confidence            322 11111122 23567899999999888888888898888653321   11112333456788999999887777777


Q ss_pred             CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          185 NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       185 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      +.|..++.....    .  ....   ...-.....|+++++|.++++-..+++|+.++.
T Consensus       203 ~~i~~~~~~~~~----~--~~~~---~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         203 NQVVKLLAGSTT----S--TVLP---FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             TEEEEECTTCSC----C--EECC---CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CEEEEEeCCCCe----E--EEEc---cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            888777533221    0  1111   112245678999999998888777788877753

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=0.0003  Score=56.46  Aligned_cols=199  Identities=13%  Similarity=0.119  Sum_probs=104.5

Q ss_pred             CccceEEEEEccCCCCCCCccEEEEee-CCCe--EEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC-
Q 018675           20 HTDRVWSLAWKPTAGVDGVAPVFASCS-GDKT--VRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD-   95 (352)
Q Consensus        20 H~~~V~~i~~~p~~~~~~~~~~l~s~s-~D~~--v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-   95 (352)
                      +.+.+.+.+|+|+      ++.||=.+ ..+.  +.+.+......    ...  ..+........|+|+|+.++..... 
T Consensus        37 ~~~~~~sP~wSPD------Gk~IAf~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~spdg~~i~~~~~~~  104 (269)
T d2hqsa1          37 SPQPLMSPAWSPD------GSKLAYVTFESGRSALVIQTLANGAV----RQV--ASFPRHNGAPAFSPDGSKLAFALSKT  104 (269)
T ss_dssp             ESSCEEEEEECTT------SSEEEEEECTTSSCEEEEEETTTCCE----EEE--ECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             CCCceeeeEECCC------CCEEEEEEeeccCcceeeeecccCce----eEE--eeeecccccceecCCCCeeeEeeecC
Confidence            4566778999998      46666443 3333  33334443321    111  2245677888999999988876643 


Q ss_pred             CcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcE-EEEeeCCCcEEEE--ecCCCCeeEEEEEeecCccCeeEEEEc
Q 018675           96 ATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTL-LATCGRDKSVWIW--EVMPGNEFECVSVLQGHAQDVKMVQWH  172 (352)
Q Consensus        96 ~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~v~vw--d~~~~~~~~~~~~~~~h~~~v~~~~~~  172 (352)
                      +...++.......... .............+++++.. +++...++...+|  ++....    ......+........|+
T Consensus       105 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~s  179 (269)
T d2hqsa1         105 GSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----PQRITWEGSQNQDADVS  179 (269)
T ss_dssp             SSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----CEECCCSSSEEEEEEEC
T ss_pred             Cccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeeccccc----ceeeecccccccccccc
Confidence            3333332222211112 22223334445567776665 4444455544444  433222    12223344455677899


Q ss_pred             CCCCEEEEEeCC-CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeC---CCcEEEEcCC
Q 018675          173 PTMDVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSD---DLTIKIWGAD  244 (352)
Q Consensus       173 ~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~---dg~i~iwd~~  244 (352)
                      |++..++..+.+ +...+|..... ...   .+.+     .+........|+|||+.|+-.+.   ...|.+++++
T Consensus       180 pdg~~~~~~~~~~~~~~i~~~~~~-~~~---~~~~-----~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         180 SDGKFMVMVSSNGGQQHIAKQDLA-TGG---VQVL-----SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETT-TCC---EEEC-----CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             cccceeEEEeecCCceeeeEeecc-ccc---ceEe-----ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            999987766554 44455433221 111   1111     12234556789999998874432   2356677664

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.37  E-value=0.00035  Score=56.83  Aligned_cols=236  Identities=11%  Similarity=0.111  Sum_probs=137.6

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeec------cccCCeeEEEECCC-CcEEEEe-eCCCcEEEEecC
Q 018675           77 VRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLE------GHENEVKSVSWNAS-GTLLATC-GRDKSVWIWEVM  148 (352)
Q Consensus        77 v~~~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~------~h~~~v~~v~~~~~-~~~l~s~-~~d~~v~vwd~~  148 (352)
                      -..++++++|+++++-..++.|++|+.. ++.  +..+.      +.......+.+.++ +..+++. +.++.|.+++..
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCE--EEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            4778999999988887778889999754 322  22221      11112345555444 3444433 444567666642


Q ss_pred             CCCeeEEEEEee-cCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC
Q 018675          149 PGNEFECVSVLQ-GHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD  227 (352)
Q Consensus       149 ~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~  227 (352)
                       +..   ...+. ........++..+++.++++....+.+.+++....      .+.++.  ...+......+++.+++.
T Consensus       102 -g~~---~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~------~~~~~g--~~~~~~~~~~i~~d~~g~  169 (279)
T d1q7fa_         102 -GQF---VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------VLHKFG--CSKHLEFPNGVVVNDKQE  169 (279)
T ss_dssp             -SCE---EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------EEEEEE--CTTTCSSEEEEEECSSSE
T ss_pred             -ccc---eeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc------eeeccc--ccccccccceeeecccee
Confidence             321   22221 23345567888888888777777777777743221      122221  123456778899999999


Q ss_pred             EEEEEeCCCcEEEEcCCccccccCCCCccceeeEEee-cccCcceEEEEecCCc-eEEecC-CCCeEEEEEccCCccccC
Q 018675          228 KLVSCSDDLTIKIWGADITRMQSGDGYASWRHLCTIS-GYHDRTIFSVHWSREG-IIASGA-ADDSVQFFVESKDDLIDG  304 (352)
Q Consensus       228 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~~s~~-~d~~v~~~~~~~~~~~~~  304 (352)
                      .+++....+.|++|+.+...+            ..+. ......+..++.++++ ++++-. .+..+.++.....-    
T Consensus       170 i~v~d~~~~~V~~~d~~G~~~------------~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~----  233 (279)
T d1q7fa_         170 IFISDNRAHCVKVFNYEGQYL------------RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL----  233 (279)
T ss_dssp             EEEEEGGGTEEEEEETTCCEE------------EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCE----
T ss_pred             EEeeeccccceeeeecCCcee------------eeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCE----
Confidence            999888899999998642211            1111 0122346677888776 444433 34467777543211    


Q ss_pred             cccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEeec
Q 018675          305 PSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWELA  349 (352)
Q Consensus       305 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~~  349 (352)
                        ...+..  .........+++.|++. ++++ ..++.|++|...
T Consensus       234 --~~~~~~--~~~~~~p~~vav~~dG~-l~V~-~~n~~v~~fr~~  272 (279)
T d1q7fa_         234 --ISALES--KVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYV  272 (279)
T ss_dssp             --EEEEEE--SSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECS
T ss_pred             --EEEEeC--CCCCCCEeEEEEeCCCc-EEEE-eCCCeEEEEEee
Confidence              111111  11223578899999985 6654 568999999864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=0.00046  Score=55.36  Aligned_cols=221  Identities=16%  Similarity=0.177  Sum_probs=112.7

Q ss_pred             eecceEEEEECCCCCEEEEEeCCC---cEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-CCcEEEEecC
Q 018675           73 HTRTVRSCAWSPSGKLLATASFDA---TTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DKSVWIWEVM  148 (352)
Q Consensus        73 h~~~v~~~~~s~~~~~l~s~~~d~---~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~v~vwd~~  148 (352)
                      +...+.+-+|||||+.||......   .+.+.+..++..   ..+..+.+......|+|+|..++.... ++...++...
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~  113 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  113 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce---eEEeeeecccccceecCCCCeeeEeeecCCccceeecc
Confidence            446678889999999999766543   244444444432   233446677889999999998776553 3332332221


Q ss_pred             CCCeeEEEEEeecCccCeeEEEEcCCCCEE-EEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC
Q 018675          149 PGNEFECVSVLQGHAQDVKMVQWHPTMDVL-FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD  227 (352)
Q Consensus       149 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~  227 (352)
                      .... .... ............+++++..+ ++...++...+|....... ..   ..+    ...........|+|++.
T Consensus       114 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~-~~---~~~----~~~~~~~~~~~~spdg~  183 (269)
T d2hqsa1         114 LASG-QIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG-AP---QRI----TWEGSQNQDADVSSDGK  183 (269)
T ss_dssp             TTTC-CEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-CC---EEC----CCSSSEEEEEEECTTSS
T ss_pred             cccc-ccee-eeeccccccccccccccccceecccccCCceEeeeecccc-cc---eee----ecccccccccccccccc
Confidence            1111 1111 11222333444566666544 4444556555553322111 00   011    12334566778999999


Q ss_pred             EEEEEeC-CCcEEEEcCCccccccCCCCccceeeEEeecccCcceEEEEecCCc-eE-EecCCCC--eEEEEEccCCccc
Q 018675          228 KLVSCSD-DLTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTIFSVHWSREG-II-ASGAADD--SVQFFVESKDDLI  302 (352)
Q Consensus       228 ~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~-~s~~~d~--~v~~~~~~~~~~~  302 (352)
                      .++..+. .+...+|..+....          .. ... ..........|+|+| .| ......+  .++++.....   
T Consensus       184 ~~~~~~~~~~~~~i~~~~~~~~----------~~-~~~-~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~---  248 (269)
T d2hqsa1         184 FMVMVSSNGGQQHIAKQDLATG----------GV-QVL-SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR---  248 (269)
T ss_dssp             EEEEEEECSSCEEEEEEETTTC----------CE-EEC-CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC---
T ss_pred             eeEEEeecCCceeeeEeecccc----------cc-eEe-ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC---
Confidence            8886654 44555553321100          00 001 122334567889987 23 3332233  3444433221   


Q ss_pred             cCcccceeeecccccCcceeEEEecC
Q 018675          303 DGPSYKMLLKKEKAHDMDVNSVQWSP  328 (352)
Q Consensus       303 ~~~~~~~~~~~~~~h~~~i~~~~~sp  328 (352)
                         .    ..++....+.+...+|||
T Consensus       249 ---~----~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         249 ---F----KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             ---C----EEECCCSSSEEEEEEECC
T ss_pred             ---C----EEEEeCCCCcEEeEEeCC
Confidence               1    112233456788889998

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=0.00019  Score=63.16  Aligned_cols=143  Identities=13%  Similarity=0.194  Sum_probs=86.6

Q ss_pred             eCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEe---------CCCcEEEEEccCCceeeeEeecc
Q 018675           46 SGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATAS---------FDATTCIWEDVGGDYECVATLEG  116 (352)
Q Consensus        46 s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~---------~d~~i~i~~~~~~~~~~~~~~~~  116 (352)
                      ..||.+.+|+..+++......  ........+....||||++.++...         ..+.+.++|..++....+.....
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~  111 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIE--GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV  111 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEEC--TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC
T ss_pred             eCCCcEEEEECCCCCEEEEEc--CccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccC
Confidence            567899999987664311111  1112234567778999999987764         34677888888776554443333


Q ss_pred             ccCCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEE------EeecCcc---------CeeEEEEcCCCCEEEEE
Q 018675          117 HENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVS------VLQGHAQ---------DVKMVQWHPTMDVLFSC  181 (352)
Q Consensus       117 h~~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~------~~~~h~~---------~v~~~~~~~~~~~l~s~  181 (352)
                      ....+....|+|+|+.+|-.. ++.|.+.+...+...+...      .+.+...         .-..+.|+|+++.|+..
T Consensus       112 ~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         112 SNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             CSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             CccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            445566788999999987765 4567777765443322211      0111110         01356799999998876


Q ss_pred             eC-CCcEEEEe
Q 018675          182 SY-DNTIKVWW  191 (352)
Q Consensus       182 ~~-d~~i~iw~  191 (352)
                      .. +..+..+.
T Consensus       191 ~~D~s~V~~~~  201 (465)
T d1xfda1         191 AINDSRVPIME  201 (465)
T ss_dssp             EEECTTSCEEE
T ss_pred             Eecccccceee
Confidence            54 34455554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.17  E-value=0.0012  Score=54.65  Aligned_cols=206  Identities=10%  Similarity=0.020  Sum_probs=114.6

Q ss_pred             ceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC----CcE
Q 018675           23 RVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD----ATT   98 (352)
Q Consensus        23 ~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----~~i   98 (352)
                      .+-+++|.++      +.+.++-...+.|.-|+.++......    . .........+++++||+++++...+    +.+
T Consensus        41 ~lEG~~~D~~------G~Ly~~D~~~g~I~ri~p~g~~~~~~----~-~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i  109 (319)
T d2dg1a1          41 QLEGLNFDRQ------GQLFLLDVFEGNIFKINPETKEIKRP----F-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI  109 (319)
T ss_dssp             CEEEEEECTT------SCEEEEETTTCEEEEECTTTCCEEEE----E-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred             CcEeCEECCC------CCEEEEECCCCEEEEEECCCCeEEEE----E-eCCCCCeeEEEECCCCCEEEEecCCCccceeE
Confidence            4468899876      45777766788888888765432111    1 1123456889999999988876443    223


Q ss_pred             EEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeCCC----cEEEEecCC-CCeeEEEEEeecCccCeeEEEEcC
Q 018675           99 CIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDK----SVWIWEVMP-GNEFECVSVLQGHAQDVKMVQWHP  173 (352)
Q Consensus        99 ~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~----~v~vwd~~~-~~~~~~~~~~~~h~~~v~~~~~~~  173 (352)
                      ...+..+........-..-....+.+.+.++|.+.++.....    .-.+|.+.. +.....+   .......+.++|+|
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~---~~~~~~pnGia~s~  186 (319)
T d2dg1a1         110 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI---IQNISVANGIALST  186 (319)
T ss_dssp             EEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE---EEEESSEEEEEECT
T ss_pred             EEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEE---eeccceeeeeeecc
Confidence            333333332221111111123467889999998777643211    112333322 2222221   11223456789999


Q ss_pred             CCCEE-EEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          174 TMDVL-FSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       174 ~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                      +++.| ++-+..+.|..|++...................+ ....-.+++.++|++.++....+.|.+|+-
T Consensus       187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~-~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCC-ccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence            99865 4556678888887653211111111111111111 123457899999998888888889988863

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.16  E-value=0.00097  Score=55.15  Aligned_cols=201  Identities=12%  Similarity=0.106  Sum_probs=113.8

Q ss_pred             EEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC----------
Q 018675           26 SLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD----------   95 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----------   95 (352)
                      ++.|.|+      +..++.+...+.+...+.+...... .........-...+.+++.++|++.++-...          
T Consensus        75 Gl~~~~d------g~~l~vad~~~~i~~~~~~g~~~~~-~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~  147 (314)
T d1pjxa_          75 GCQCDRD------ANQLFVADMRLGLLVVQTDGTFEEI-AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             EEEECSS------SSEEEEEETTTEEEEEETTSCEEEC-CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred             eEEEeCC------CCEEEEEECCCeEEEEeCCCcEEEE-EeccccccccCCCcEEEECCCCCEEEecCccCcccccccce
Confidence            4666665      3566666666677777766542111 0000000001235789999999988874321          


Q ss_pred             ---CcEEEEEcc-CCceeeeEeeccccCCeeEEEECCCCc-----EEEEeeCCCcEEEEecCCCCeeEEEEE---eecC-
Q 018675           96 ---ATTCIWEDV-GGDYECVATLEGHENEVKSVSWNASGT-----LLATCGRDKSVWIWEVMPGNEFECVSV---LQGH-  162 (352)
Q Consensus        96 ---~~i~i~~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~-----~l~s~~~d~~v~vwd~~~~~~~~~~~~---~~~h-  162 (352)
                         ..-++|... .++...   +...-...+.++|+|+++     ++++-+..+.|..+|+...........   +.+. 
T Consensus       148 ~~~~~G~v~~~~~dg~~~~---~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  224 (314)
T d1pjxa_         148 MQEKFGSIYCFTTDGQMIQ---VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             TSSSCEEEEEECTTSCEEE---EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             eccCCceEEEEeecCceeE---eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccc
Confidence               112344322 222221   112223456788988764     455556778888888754443322221   1111 


Q ss_pred             ccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 018675          163 AQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGD-KLVSCSDDLTIKIW  241 (352)
Q Consensus       163 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s~~~dg~i~iw  241 (352)
                      ....-.+++..++++.++....+.|.+|+......     ...+.    .......+++|.|+++ ++++.+.+|+|..+
T Consensus       225 ~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~-----~~~i~----~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP-----KMRIR----CPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC-----SEEEE----CSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEE-----EEEEE----CCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            11234678889999888877888999996543211     11121    1234678899999986 56777788888888


Q ss_pred             cCCc
Q 018675          242 GADI  245 (352)
Q Consensus       242 d~~~  245 (352)
                      ++..
T Consensus       296 ~~~~  299 (314)
T d1pjxa_         296 EWQR  299 (314)
T ss_dssp             ECSS
T ss_pred             ECCC
Confidence            7643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.89  E-value=0.004  Score=50.80  Aligned_cols=199  Identities=12%  Similarity=0.032  Sum_probs=115.2

Q ss_pred             EEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCCCcEEEEEccC
Q 018675           26 SLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVG  105 (352)
Q Consensus        26 ~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i~~~~~  105 (352)
                      +..|.+.+     +.+..+=-..+.|.-|+..++..     ..+  .....+.++++.++|+++++ +.+ .+.++|..+
T Consensus        22 gp~wd~~~-----~~l~wvDi~~~~I~r~d~~~g~~-----~~~--~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~t   87 (295)
T d2ghsa1          22 GPTFDPAS-----GTAWWFNILERELHELHLASGRK-----TVH--ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTAT   87 (295)
T ss_dssp             EEEEETTT-----TEEEEEEGGGTEEEEEETTTTEE-----EEE--ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTT
T ss_pred             CCeEECCC-----CEEEEEECCCCEEEEEECCCCeE-----EEE--ECCCCcEEEEEecCCCEEEE-EeC-ccEEeeccc
Confidence            45676653     23444433557788888776532     111  12356788899999887765 444 588888887


Q ss_pred             CceeeeEeeccc--cCCeeEEEECCCCcEEEEeeCC----CcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEE
Q 018675          106 GDYECVATLEGH--ENEVKSVSWNASGTLLATCGRD----KSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLF  179 (352)
Q Consensus       106 ~~~~~~~~~~~h--~~~v~~v~~~~~~~~l~s~~~d----~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  179 (352)
                      ++...+......  ...++.+.+.|+|.+.++...+    +.-.+|.+..+.... +   .......+.+.|++++..++
T Consensus        88 g~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~-~---~~~~~~~Ng~~~s~d~~~l~  163 (295)
T d2ghsa1          88 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK-L---FADISIPNSICFSPDGTTGY  163 (295)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE-E---EEEESSEEEEEECTTSCEEE
T ss_pred             ceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE-E---eeccCCcceeeecCCCceEE
Confidence            766544433222  1247788899999977665322    234566655442211 1   11223456788999988654


Q ss_pred             -EEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 018675          180 -SCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLTIKIWGA  243 (352)
Q Consensus       180 -s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~dg~i~iwd~  243 (352)
                       +-+..+.|..|++........... .......+.....-.+++..+|.+.++.-..+.|..||-
T Consensus       164 ~~dt~~~~I~~~~~d~~~~~~~~~~-~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         164 FVDTKVNRLMRVPLDARTGLPTGKA-EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCC-EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             EeecccceeeEeeecccccccccce-EEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC
Confidence             555677787776543211100000 010011122345677888889988887777788888864

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=0.00026  Score=62.22  Aligned_cols=157  Identities=12%  Similarity=0.131  Sum_probs=87.9

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEccCCceeeeEeecc-ccCCeeEEEECCCCcEEEEee---------CCCcEEEEecCC
Q 018675           80 CAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEG-HENEVKSVSWNASGTLLATCG---------RDKSVWIWEVMP  149 (352)
Q Consensus        80 ~~~s~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~---------~d~~v~vwd~~~  149 (352)
                      ..|.+++.++. -..++.+.+|+..+++...+..... ..-.+....|+||++.++...         ..+.+.++|+..
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            35777776553 3456789999887765433322221 223567888999999876653         346778889875


Q ss_pred             CCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeecc---CCCCc---------ccE
Q 018675          150 GNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISES---NNGHS---------STI  217 (352)
Q Consensus       150 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---~~~h~---------~~i  217 (352)
                      +.. ..+.........+....|+|+++.++-.. ++.|.+.+......  .+ +..-...   .+|..         ..-
T Consensus       101 ~~~-~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~--~~-lt~~g~~~~i~nG~~d~vyeee~~~~~  175 (465)
T d1xfda1         101 GDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQA--IR-VVSTGKEGVIYNGLSDWLYEEEILKTH  175 (465)
T ss_dssp             CCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCC--EE-EECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             Cce-eeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCce--EE-EecccCcceeeccccchhhhhhhcccc
Confidence            542 22221222233455678999999877654 56676665433211  00 1000000   00000         111


Q ss_pred             EEEEEcCCCCEEEEEe-CCCcEEEEc
Q 018675          218 WALSFNAKGDKLVSCS-DDLTIKIWG  242 (352)
Q Consensus       218 ~~l~~~~~~~~l~s~~-~dg~i~iwd  242 (352)
                      .++-|||||++||... .+..+..+.
T Consensus       176 ~a~~WSPDgk~iaf~~~D~s~V~~~~  201 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAINDSRVPIME  201 (465)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred             ceEEECCCCCeEEEEEecccccceee
Confidence            4677999999999765 344455553

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.40  E-value=0.024  Score=46.49  Aligned_cols=206  Identities=12%  Similarity=0.114  Sum_probs=111.0

Q ss_pred             CeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCC--CcEEEEecCCCCC
Q 018675          120 EVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD--NTIKVWWAEDTDS  197 (352)
Q Consensus       120 ~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--~~i~iw~~~~~~~  197 (352)
                      ....++|.++|++.++-...+.|..|+......   .............+++++++.++++...+  ....++...... 
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~---~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~-  116 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-  116 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeE---EEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC-
Confidence            346789999999877777788887777543321   12222333456789999999877765432  233333322211 


Q ss_pred             CCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEeCC------CcEEEEcCCccccccCCCCccceeeEEeecccCcce
Q 018675          198 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDD------LTIKIWGADITRMQSGDGYASWRHLCTISGYHDRTI  271 (352)
Q Consensus       198 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  271 (352)
                      ...   ....... .-....+.+.+.++|++.++-...      +.+..++.+..         .....  ..  .-...
T Consensus       117 ~~~---~~~~~~~-~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~---------~~~~~--~~--~~~~p  179 (319)
T d2dg1a1         117 DNL---QDIIEDL-STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR---------TVTPI--IQ--NISVA  179 (319)
T ss_dssp             CSC---EEEECSS-SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC---------CEEEE--EE--EESSE
T ss_pred             cee---eeeccCC-CcccCCcceeEEeccceeecccccccccCcceeEEEecccc---------eeEEE--ee--cccee
Confidence            111   1111111 123457889999999987764332      22333332211         00111  00  11234


Q ss_pred             EEEEecCCc--eEEecCCCCeEEEEEccCCccccCcccceeeecccccCcceeEEEecCCCcceEEEecCCCeEEEEee
Q 018675          272 FSVHWSREG--IIASGAADDSVQFFVESKDDLIDGPSYKMLLKKEKAHDMDVNSVQWSPGERRLLASASDDGMIKIWEL  348 (352)
Q Consensus       272 ~~~~~~~~~--~~~s~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~~l~s~~~Dg~i~iw~~  348 (352)
                      ..+++++++  ++++-...+.|..++....................+ ...--.+++.++|. ++++....+.|.+|+-
T Consensus       180 nGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~-~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         180 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDN-LYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCC-EEEEEETTTEEEEECT
T ss_pred             eeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCC-ccceeeeeEcCCCC-EEEEEcCCCEEEEECC
Confidence            567888865  456667778888876543221111111111111111 22355789988885 7777777899988874

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.37  E-value=0.021  Score=45.21  Aligned_cols=96  Identities=9%  Similarity=0.166  Sum_probs=57.5

Q ss_pred             ECCC--CCEEEEEeCCCcEEEEEccCCceeeeEeeccccCCeeEEEECCCCcEEEEeeC-CC-----cEEEEecCCCCee
Q 018675           82 WSPS--GKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGR-DK-----SVWIWEVMPGNEF  153 (352)
Q Consensus        82 ~s~~--~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~-----~v~vwd~~~~~~~  153 (352)
                      .+||  |+.+|..+. +.|-+.+..+++..   .+..+.+.+....|+|||+.|+-... ++     .|.+.+...+.. 
T Consensus         6 ~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~---~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~-   80 (281)
T d1k32a2           6 LNPDIHGDRIIFVCC-DDLWEHDLKSGSTR---KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI-   80 (281)
T ss_dssp             EEEEEETTEEEEEET-TEEEEEETTTCCEE---EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE-
T ss_pred             cCCCCCCCEEEEEeC-CcEEEEECCCCCEE---EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce-
Confidence            5788  888876644 45666677776543   34455677889999999998875532 22     355555544322 


Q ss_pred             EEEEE----eecCccCeeEEEEcCCCCEEEEEe
Q 018675          154 ECVSV----LQGHAQDVKMVQWHPTMDVLFSCS  182 (352)
Q Consensus       154 ~~~~~----~~~h~~~v~~~~~~~~~~~l~s~~  182 (352)
                      ..+..    ............|+|+++.++...
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            11110    011122345678999998877543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.97  E-value=0.65  Score=38.13  Aligned_cols=108  Identities=13%  Similarity=0.146  Sum_probs=66.2

Q ss_pred             ccEEEEeeCCC-----------eEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC-CcEEEEEccCC
Q 018675           39 APVFASCSGDK-----------TVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD-ATTCIWEDVGG  106 (352)
Q Consensus        39 ~~~l~s~s~D~-----------~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-~~i~i~~~~~~  106 (352)
                      +++++-|+.+.           .+.+||..++.  |.........+.......++.++|++++.|+.+ ..+.+||..+.
T Consensus        31 gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~--w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~  108 (387)
T d1k3ia3          31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI--VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD  108 (387)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC--BCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred             CEEEEEEeecCcccCCCCCceeEEEEEECCCCc--EeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccC
Confidence            46777666421           36789887653  222111112222333456788999999988766 57899998877


Q ss_pred             ceeeeEeeccccCCeeEEEECCCCcEEEEeeCC------CcEEEEecCC
Q 018675          107 DYECVATLEGHENEVKSVSWNASGTLLATCGRD------KSVWIWEVMP  149 (352)
Q Consensus       107 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------~~v~vwd~~~  149 (352)
                      .+.....+.... .-...+..+++..++.++.+      ..+.+||...
T Consensus       109 ~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         109 SWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             cccccccccccc-cccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            665443333222 22355667889988888753      3688888654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.82  E-value=0.14  Score=40.16  Aligned_cols=99  Identities=12%  Similarity=0.217  Sum_probs=54.6

Q ss_pred             ECCC--CcEEEEeeCCCcEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeC-CC---c--EEEEecCCCCC
Q 018675          126 WNAS--GTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSY-DN---T--IKVWWAEDTDS  197 (352)
Q Consensus       126 ~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~---~--i~iw~~~~~~~  197 (352)
                      .+|+  |+.++-.+. +.|.+.|+..+..    ..+..+........|+||++.|+-... ++   .  |.+++..... 
T Consensus         6 ~sPdi~G~~v~f~~~-~dl~~~d~~~g~~----~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~-   79 (281)
T d1k32a2           6 LNPDIHGDRIIFVCC-DDLWEHDLKSGST----RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-   79 (281)
T ss_dssp             EEEEEETTEEEEEET-TEEEEEETTTCCE----EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-
T ss_pred             cCCCCCCCEEEEEeC-CcEEEEECCCCCE----EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc-
Confidence            4687  888776554 4577778876543    223445556778899999998875432 22   2  3343332221 


Q ss_pred             CCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEE
Q 018675          198 DNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSC  232 (352)
Q Consensus       198 ~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~  232 (352)
                        ...+..................|+|+|+.|+..
T Consensus        80 --~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          80 --IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             --EEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             --eEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence              111100000001122345567899999988764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.76  E-value=0.96  Score=37.87  Aligned_cols=205  Identities=11%  Similarity=0.032  Sum_probs=105.0

Q ss_pred             EEEECC---CCCEEEEEe-CCCcEEEEEccCCceeeeEeeccccCCeeEEEECC--CCcEEEEeeCCC------------
Q 018675           79 SCAWSP---SGKLLATAS-FDATTCIWEDVGGDYECVATLEGHENEVKSVSWNA--SGTLLATCGRDK------------  140 (352)
Q Consensus        79 ~~~~s~---~~~~l~s~~-~d~~i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~------------  140 (352)
                      .+++.-   ||++|.+.. .++.|.+-|...-+...+..+. ....+..++..+  .-.+++..+.+.            
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            455543   788877655 5678888887765443344442 345567776654  445676666532            


Q ss_pred             ------cEEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCc---------------EEEEec-------
Q 018675          141 ------SVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNT---------------IKVWWA-------  192 (352)
Q Consensus       141 ------~v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~---------------i~iw~~-------  192 (352)
                            .+.+.|....+....+. ..   .....+.++|+++++++.+.+..               +.+++.       
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~-V~---g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av  243 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVL-VS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  243 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEE-ES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             hhhcceEEEEEecCCceEEEEee-eC---CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhh
Confidence                  24556654332211111 11   23456789999999888775421               222211       


Q ss_pred             ----------------CCCCCCCceeEeeeeccCCCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEcCCccccccCCCCc
Q 018675          193 ----------------EDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCS-DDLTIKIWGADITRMQSGDGYA  255 (352)
Q Consensus       193 ----------------~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~  255 (352)
                                      .......  ....+......|     .+.++|||+|+++++ -+.++.++|++.-........ 
T Consensus       244 ~~Gk~~eingV~VVD~~~~~~~~--v~~yIPVpKsPH-----GV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~-  315 (459)
T d1fwxa2         244 AAGDYQELNGVKVVDGRKEASSL--FTRYIPIANNPH-----GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA-  315 (459)
T ss_dssp             HHTCSEEETTEEEEECSGG--CS--SEEEEEEESSCC-----CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-
T ss_pred             hcCCcEEeCCceeecccccCCcc--eeEEEecCCCCC-----ceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccC-
Confidence                            1100000  011111112223     478999999987655 689999999853211100000 


Q ss_pred             cceeeEEeecccCcceEEEEecCCce-EEecCCCCeEEEEEc
Q 018675          256 SWRHLCTISGYHDRTIFSVHWSREGI-IASGAADDSVQFFVE  296 (352)
Q Consensus       256 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~s~~~d~~v~~~~~  296 (352)
                      ..+.................|+..+. +.+.--|..+.-|..
T Consensus       316 ~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         316 DPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             -GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             CccccEEeecccCcCccccccCCCceEEEEeeccceEEEEec
Confidence            00100001111222344456666663 445566888888865

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.17  E-value=2  Score=35.89  Aligned_cols=73  Identities=11%  Similarity=0.032  Sum_probs=41.7

Q ss_pred             eeEEEECCCCcEEEEe-eCCCcEEEEecCCCC--------eeEEEEEeecCccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 018675          121 VKSVSWNASGTLLATC-GRDKSVWIWEVMPGN--------EFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWW  191 (352)
Q Consensus       121 v~~v~~~~~~~~l~s~-~~d~~v~vwd~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~  191 (352)
                      ...+..+|||++++.+ .-+.++.|.|+..-.        ...++..-......-..-+|...+.-..+.=-|..|.-|+
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEe
Confidence            4578889999986655 568899999974110        0000100000111223445666664344445688999998


Q ss_pred             cC
Q 018675          192 AE  193 (352)
Q Consensus       192 ~~  193 (352)
                      +.
T Consensus       357 ~~  358 (459)
T d1fwxa2         357 IE  358 (459)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.99  E-value=1.6  Score=34.41  Aligned_cols=191  Identities=9%  Similarity=0.015  Sum_probs=104.9

Q ss_pred             cceEEEEEccCCCCCCCccEEEEeeCCCeEEEEecCCCceeeeeeeeeecceecceEEEEECCCCCEEEEEeCC----Cc
Q 018675           22 DRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRFWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFD----AT   97 (352)
Q Consensus        22 ~~V~~i~~~p~~~~~~~~~~l~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----~~   97 (352)
                      ..+.++.+.++      +.++++ +.+ -+.+++..+++.. .............++.+.+.|+|++.++...+    +.
T Consensus        59 ~~~~~i~~~~d------g~l~va-~~~-gl~~~d~~tg~~~-~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~  129 (295)
T d2ghsa1          59 FMGSALAKISD------SKQLIA-SDD-GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGA  129 (295)
T ss_dssp             SCEEEEEEEET------TEEEEE-ETT-EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTC
T ss_pred             CCcEEEEEecC------CCEEEE-EeC-ccEEeecccceee-EEeeeecCCCcccceeeEECCCCCEEEEeccccccccc
Confidence            35667776664      344444 454 4777888766421 11000001112357889999999987765422    34


Q ss_pred             EEEEEccCCceeeeEeeccccCCeeEEEECCCCcEE-EEeeCCCcEEEEecCCCC-----eeEEEEEeecCccCeeEEEE
Q 018675           98 TCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLL-ATCGRDKSVWIWEVMPGN-----EFECVSVLQGHAQDVKMVQW  171 (352)
Q Consensus        98 i~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~h~~~v~~~~~  171 (352)
                      -.+|....++...+  .. .-...+.+.|+++++.+ ++-+..+.|..+++....     .........+.....-.+++
T Consensus       130 g~l~~~~~g~~~~~--~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~v  206 (295)
T d2ghsa1         130 GSIYHVAKGKVTKL--FA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC  206 (295)
T ss_dssp             EEEEEEETTEEEEE--EE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE
T ss_pred             eeEeeecCCcEEEE--ee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEE
Confidence            45665555533222  12 22346789999998854 555667788888764221     11111122222334557778


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEEEEc-CCCC-EEEEEeC
Q 018675          172 HPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFN-AKGD-KLVSCSD  234 (352)
Q Consensus       172 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~~-~~~~-~l~s~~~  234 (352)
                      ..++.+.++....+.|..|+....      .+..+..    -...+++++|- |+.+ +++|...
T Consensus       207 D~~GnlWva~~~~g~V~~~dp~G~------~~~~i~l----P~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         207 DAEGHIWNARWGEGAVDRYDTDGN------HIARYEV----PGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             CTTSCEEEEEETTTEEEEECTTCC------EEEEEEC----SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             cCCCCEEeeeeCCCceEEecCCCc------EeeEecC----CCCceEEEEEeCCCCCEEEEEECC
Confidence            888887776667788988864321      2222221    12458899995 5544 4455443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=90.56  E-value=2.5  Score=34.30  Aligned_cols=95  Identities=7%  Similarity=0.088  Sum_probs=54.5

Q ss_pred             EEEEecCCCCeeEEEEEeecCccCeeEEEEcCCCCEEEEEeCC-CcEEEEecCCCCCCCceeEeeeeccCCCCcccEEEE
Q 018675          142 VWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYD-NTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWAL  220 (352)
Q Consensus       142 v~vwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l  220 (352)
                      +.+||...+.-.........+........+.+++.+++.|+.+ ..+.+||...   ..|.....+......|     +.
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~---~~w~~~~~~~~~r~~~-----~~  125 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS---DSWIPGPDMQVARGYQ-----SS  125 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG---TEEEECCCCSSCCSSC-----EE
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc---Cccccccccccccccc-----ce
Confidence            5678876543221111122233334456788999988888765 5788997643   2343322222222222     35


Q ss_pred             EEcCCCCEEEEEeCC------CcEEEEcCC
Q 018675          221 SFNAKGDKLVSCSDD------LTIKIWGAD  244 (352)
Q Consensus       221 ~~~~~~~~l~s~~~d------g~i~iwd~~  244 (352)
                      +..++|+.++.|+.+      ..+.+||..
T Consensus       126 ~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3         126 ATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  155 (387)
T ss_dssp             EECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             eeecCCceeeeccccccccccceeeeecCC
Confidence            567889998888753      357888764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.17  E-value=4.6  Score=33.96  Aligned_cols=55  Identities=13%  Similarity=0.200  Sum_probs=37.2

Q ss_pred             CCeeEEEECCCCcEEEEeeCCCcEEEEecCCCCeeEEEEEee------cCccCeeEEEEcCC
Q 018675          119 NEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQ------GHAQDVKMVQWHPT  174 (352)
Q Consensus       119 ~~v~~v~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~------~h~~~v~~~~~~~~  174 (352)
                      ...++++|.|++++|++--.+|.|++.+...+.. ..+..+.      .-......++++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~-~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE-eecccCCccccccCCCCceeeEEeCCC
Confidence            4678999999999988775578898888655433 2222221      11245678999985