Citrus Sinensis ID: 018704
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 351 | 2.2.26 [Sep-21-2011] | |||||||
| O80874 | 508 | Alternative NAD(P)H dehyd | yes | no | 0.957 | 0.661 | 0.772 | 1e-146 | |
| Q8GWA1 | 510 | Alternative NAD(P)H dehyd | no | no | 0.977 | 0.672 | 0.748 | 1e-143 | |
| Q55CD9 | 451 | Probable NADH dehydrogena | yes | no | 0.894 | 0.696 | 0.378 | 5e-58 | |
| Q1JPL4 | 571 | NAD(P)H dehydrogenase B1, | no | no | 0.806 | 0.495 | 0.4 | 5e-55 | |
| F4JJJ3 | 580 | NAD(P)H dehydrogenase B3, | no | no | 0.866 | 0.524 | 0.391 | 2e-50 | |
| Q94BV7 | 582 | NAD(P)H dehydrogenase B2, | no | no | 0.814 | 0.491 | 0.395 | 1e-48 | |
| O43090 | 551 | Probable NADH-ubiquinone | yes | no | 0.792 | 0.504 | 0.377 | 2e-48 | |
| O14121 | 551 | Probable NADH-ubiquinone | no | no | 0.780 | 0.497 | 0.375 | 1e-47 | |
| Q9SKT7 | 582 | NAD(P)H dehydrogenase B4, | no | no | 0.783 | 0.472 | 0.391 | 2e-45 | |
| P40215 | 560 | External NADH-ubiquinone | yes | no | 0.834 | 0.523 | 0.383 | 7e-44 |
| >sp|O80874|NDA2_ARATH Alternative NAD(P)H dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=NDA2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 519 bits (1337), Expect = e-146, Method: Compositional matrix adjust.
Identities = 269/348 (77%), Positives = 292/348 (83%), Gaps = 12/348 (3%)
Query: 8 LRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPST----VQLTQYSGLGPTKANEKP 63
RN + S SY+ S C + T SP+ V +QYSGL PT+ EKP
Sbjct: 21 FRNSGSSSLSYTLASRF--------CTAQETQIQSPAKIPNDVDRSQYSGLPPTREGEKP 72
Query: 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARI 123
RVVVLGSGWAGCRLMKGIDT+LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI+RI
Sbjct: 73 RVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPISRI 132
Query: 124 QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183
QPAISREPGS+FFL++C+ +D D H VHCET+TD L TL+PWKFKI+YDKLVIA GAEAS
Sbjct: 133 QPAISREPGSFFFLANCSRLDADAHEVHCETLTDGLNTLKPWKFKIAYDKLVIASGAEAS 192
Query: 184 TFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGV 243
TFGIHGV ENA FLREVHHAQEIRRKLLLNLMLSD PGIS+EEK RLLHCVVVGGGPTGV
Sbjct: 193 TFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGISKEEKRRLLHCVVVGGGPTGV 252
Query: 244 EFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVR 303
EFSGELSDFIM+DVRQRY+HVKD IHVTLIEA +ILSSFDDRLR YA QL+KSGVR VR
Sbjct: 253 EFSGELSDFIMKDVRQRYAHVKDDIHVTLIEARDILSSFDDRLRRYAIKQLNKSGVRFVR 312
Query: 304 GIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
GIVKDV SQKLIL+DGTEVPYGLLVWSTGVGPS V+SL LPK P GR
Sbjct: 313 GIVKDVQSQKLILDDGTEVPYGLLVWSTGVGPSPFVRSLGLPKDPTGR 360
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Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 6EC: .EC: -EC: .EC: - |
| >sp|Q8GWA1|NDA1_ARATH Alternative NAD(P)H dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=NDA1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 507 bits (1305), Expect = e-143, Method: Compositional matrix adjust.
Identities = 259/346 (74%), Positives = 293/346 (84%), Gaps = 3/346 (0%)
Query: 6 HLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRV 65
++ RNP +SY+ SS +T D + ++ +Y GL PTK EKPRV
Sbjct: 20 NVFRNP--ESYTLSSRFCTALQKQQVTDTVQAKEDVV-NALEPQRYDGLAPTKEGEKPRV 76
Query: 66 VVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQP 125
+VLGSGWAGCR++KGIDTS+YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI+RIQP
Sbjct: 77 LVLGSGWAGCRVLKGIDTSIYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPISRIQP 136
Query: 126 AISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185
AISREPGSY+FL++C+ +D DNH VHCETVT+ TL+PWKFKI+YDKLV+A GAEASTF
Sbjct: 137 AISREPGSYYFLANCSKLDADNHEVHCETVTEGSSTLKPWKFKIAYDKLVLACGAEASTF 196
Query: 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 245
GI+GV ENA FLREVHHAQEIRRKLLLNLMLS+VPGI E+EK RLLHCVVVGGGPTGVEF
Sbjct: 197 GINGVLENAIFLREVHHAQEIRRKLLLNLMLSEVPGIGEDEKKRLLHCVVVGGGPTGVEF 256
Query: 246 SGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI 305
SGELSDFIM+DVRQRYSHVKD I VTLIEA +ILSSFDDRLRHYA QL+KSGV+LVRGI
Sbjct: 257 SGELSDFIMKDVRQRYSHVKDDIRVTLIEARDILSSFDDRLRHYAIKQLNKSGVKLVRGI 316
Query: 306 VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
VK+V QKLIL+DGTEVPYG LVWSTGVGPS+ V+SLD PK PGGR
Sbjct: 317 VKEVKPQKLILDDGTEVPYGPLVWSTGVGPSSFVRSLDFPKDPGGR 362
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Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|Q55CD9|NDH_DICDI Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 225 bits (573), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/328 (37%), Positives = 196/328 (59%), Gaps = 14/328 (4%)
Query: 28 NLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYD 87
NLI+ ++ + + S+++ K E ++++LG GW +K +++ YD
Sbjct: 5 NLIIRGRNYISDHLTKSSLEKAIIRRQKRGKVIENEKLIILGCGWGSYSFLKNLNSIKYD 64
Query: 88 VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHCAGIDTD 146
+ +SPRNH +FTPLL S+ VGTLEFRS+AEP+ +R+ + ++ + I+ +
Sbjct: 65 ITVISPRNHFLFTPLLTSSAVGTLEFRSIAEPVR-----TTRDINEFKYIQASVTSINPE 119
Query: 147 NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEI 206
N+ V V +P F++ YDKLVI +G+ +TFGI GV+ENA FL+E+HHA+EI
Sbjct: 120 NNSV---LVKSTFHNEKP--FEMKYDKLVIGVGSRNNTFGIKGVEENANFLKELHHAREI 174
Query: 207 RRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK- 265
R+K++ + +P +S EE+ RLL V+VGGG TG+EF+ EL+DF D+ + + V
Sbjct: 175 RQKIIECFERASLPDVSTEERERLLSFVIVGGGATGIEFTSELNDFFSEDLSRLFPFVPV 234
Query: 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTEVP 323
+ + + L+EA+ +ILS+FD +L A SG+ + VK+V +IL++G +P
Sbjct: 235 NEVKIILLEASGKILSTFDQKLVKKALINFRNSGIDVRTHSSVKEVLKDYVILDNGDRIP 294
Query: 324 YGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
YGLLVWSTG+G LVK+ K R
Sbjct: 295 YGLLVWSTGIGQHPLVKNSSFEKDSHDR 322
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Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|Q1JPL4|NDB1_ARATH NAD(P)H dehydrogenase B1, mitochondrial OS=Arabidopsis thaliana GN=NDB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (547), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/295 (40%), Positives = 178/295 (60%), Gaps = 12/295 (4%)
Query: 65 VVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQ 124
VVVLG+GWAG +K +D + YDV VSP+N+ FTPLL S GT+E RS+ E + I
Sbjct: 52 VVVLGTGWAGISFLKDLDITSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIVESVRNIT 111
Query: 125 PAISREPGSYFFLSHCAGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEAS 183
+ E + + C ID N VHC V D+ + +F + YD L++A+GA+ +
Sbjct: 112 KKKNGEI--ELWEADCFKIDHVNQKVHCRPVFKDDPEASQ--EFSLGYDYLIVAVGAQVN 167
Query: 184 TFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGV 243
TFG GV EN FL+EV AQ IRR ++ + +PG++EE++ R LH V+VGGGPTGV
Sbjct: 168 TFGTPGVLENCHFLKEVEDAQRIRRGVIDCFEKAILPGLTEEQRRRKLHFVIVGGGPTGV 227
Query: 244 EFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLV 302
EF+ EL DFI+ D+ + Y VK+ + +TLI++ + IL++FD+R+ +A + ++ G+ +
Sbjct: 228 EFAAELHDFIIEDITKIYPSVKELVKITLIQSGDHILNTFDERISSFAEQKFTRDGIDVQ 287
Query: 303 RGI----VKDVDSQKLILNDG--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
G+ V D D + + G +P+GL++WSTGVG ++ GGR
Sbjct: 288 TGMRVMSVTDKDITVKVKSSGELVSIPHGLILWSTGVGTRPVISDFMEQVGQGGR 342
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Calcium-dependent NAD(P)H dehydrogenase. Binds calcium ions. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|F4JJJ3|NDB3_ARATH NAD(P)H dehydrogenase B3, mitochondrial OS=Arabidopsis thaliana GN=NDB3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 188/319 (58%), Gaps = 15/319 (4%)
Query: 39 TDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98
++A+PS YS G K +VV+LG+GWAG +K ++ S Y+V +SPRN+
Sbjct: 38 SEANPS------YSNNGVETKTRKRKVVLLGTGWAGASFLKTLNNSSYEVQVISPRNYFA 91
Query: 99 FTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158
FTPLL S GT+E RSV EPI I + E F + C ID + V+C +
Sbjct: 92 FTPLLPSVTCGTVEARSVVEPIRNIARKQNVEMS--FLEAECFKIDPGSKKVYCRS-KQG 148
Query: 159 LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218
+ + +F + YD LVIA GA+++TF I GV+EN FL+EV AQ IR ++ + +
Sbjct: 149 VNSKGKKEFDVDYDYLVIATGAQSNTFNIPGVEENCHFLKEVEDAQRIRSTVIDSFEKAS 208
Query: 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANE 277
+PG++E+E+ R+LH VVVGGGPTGVEF+ EL DF+ D+ + Y K+ + +TL+E A+
Sbjct: 209 LPGLNEQERKRMLHFVVVGGGPTGVEFASELHDFVNEDLVKLYPKAKNLVQITLLEAADH 268
Query: 278 ILSSFDDRLRHYATTQLSKSGVRLVRG--IVKDVD---SQKLILNDGTEVPYGLLVWSTG 332
IL+ FD R+ +A + ++ G+ + G +VK D S K + + +PYG++VWSTG
Sbjct: 269 ILTMFDKRITEFAEEKFTRDGIDVKLGSMVVKVNDKEISAKTKAGEVSTIPYGMIVWSTG 328
Query: 333 VGPSTLVKSLDLPKSPGGR 351
+G ++K G R
Sbjct: 329 IGTRPVIKDFMKQIGQGNR 347
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Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|Q94BV7|NDB2_ARATH NAD(P)H dehydrogenase B2, mitochondrial OS=Arabidopsis thaliana GN=NDB2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 178/298 (59%), Gaps = 12/298 (4%)
Query: 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
+K +VV+LG+GWAG +K ++ S Y+V +SPRN+ FTPLL S GT+E RSV EPI
Sbjct: 57 KKKKVVLLGTGWAGTSFLKNLNNSQYEVQIISPRNYFAFTPLLPSVTCGTVEARSVVEPI 116
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
I + + + + C ID + V+C + L + +F + YD LVIA GA
Sbjct: 117 RNIG---RKNVDTSYLEAECFKIDPASKKVYCRS-KQGLSSNGKKEFSVDYDYLVIATGA 172
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
+++TF I GV+EN FL+EV AQ IR+ ++ + + +P +S+EE+ R+LH VVVGGGP
Sbjct: 173 QSNTFNIPGVEENCHFLKEVEDAQRIRKTVIDSFEKASLPELSDEERKRILHFVVVGGGP 232
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGV 299
TGVEF+ EL DF+ D+ Y K + +TL+E A+ IL+ FD R+ +A + S+ G+
Sbjct: 233 TGVEFAAELHDFVTEDLVSLYPRAKGSVRITLLEAADHILTMFDKRITEFAEEKFSRDGI 292
Query: 300 RLVRGIV------KDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
+ G + KD+ S K + + +PYG++VWSTG+G ++K G R
Sbjct: 293 DVKLGSMVTKVNEKDI-SAKTKGGEVSSIPYGMIVWSTGIGTRPVIKDFMKQIGQGNR 349
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Calcium-dependent NAD(P)H dehydrogenase; more efficient on NADH. Binds calcium ions. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|O43090|NDH2_SCHPO Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC947.15c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 169/310 (54%), Gaps = 32/310 (10%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI- 120
K +VVLGSGW +K +D SLY++ VSPR+H +FTP+L S VGTL S+ EPI
Sbjct: 90 KKNIVVLGSGWGAVAAIKNLDPSLYNITLVSPRDHFLFTPMLPSCTVGTLRLPSITEPIV 149
Query: 121 ----ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176
+I P S + C IDT V T+ E I YD LV
Sbjct: 150 ALFKGKIDP-------SNIHQAECTAIDTSAKKVTIRGTTEANEGKEAV---IPYDTLVF 199
Query: 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDV---PGISEEEKSRLLHC 233
A+GA TFGI GV+++ FL+E A+++ ++ +L V +S EE++RLLH
Sbjct: 200 AIGAGNQTFGIQGVRDHGCFLKEAGDAKKVFNRIF--EILEQVRFNKDLSPEERARLLHI 257
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
VVGGGPTG+EF+ E+ DFI DV+ + ++ IHVTLIEA +L F L Y
Sbjct: 258 TVVGGGPTGMEFAAEMQDFIDNDVKDMFPELQKDIHVTLIEAAPGVLPMFTKSLITYTEN 317
Query: 293 QLSKSGVRLV-RGIVKDVDSQKLILN----DGT----EVPYGLLVWSTGVGPSTLVKSL- 342
++++ + +VKDV+ + LI+ DG+ E+PYG+LVW+ G+ L ++L
Sbjct: 318 LFKNLNIKIMTKTVVKDVNEKNLIVQKTNPDGSKAMQEIPYGMLVWAAGITARPLTRTLM 377
Query: 343 -DLPKSPGGR 351
+P+ G R
Sbjct: 378 SSIPEQSGAR 387
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Catalyzes the oxidation of NADH. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 3 |
| >sp|O14121|NDH1_SCHPO Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A11.07 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 166/293 (56%), Gaps = 19/293 (6%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIA 121
K +VVLG+GW +++ IDTSL++V+ VSPRN+ +FT LL ST G++ RS+ +PI
Sbjct: 91 KKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSVHTRSIVQPIR 150
Query: 122 RIQPAISREPGSY--FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179
+ R Y F+ + C +D D V+H + T + LE +I YD LV + G
Sbjct: 151 YML----RHKSCYVKFYEAECTDVDADKKVIHIKKTTTDGVDLEQ---EIKYDYLVCSHG 203
Query: 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239
AE TF I G+ E FL+E+ AQ+IR ++L L + + E + R +H VVVGGG
Sbjct: 204 AETQTFNIPGIAEYGCFLKEIWDAQKIRARILHCLEQAQFKDLPAETRRRYVHTVVVGGG 263
Query: 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSG 298
PTG+EF+GE++DFI D++ Y + D VTL+EA +L F +LR Y + S
Sbjct: 264 PTGMEFAGEMADFIEDDLKSWYPELADDFAVTLVEALPSVLPMFSAKLRDYTQSLFDSSH 323
Query: 299 VRL-VRGIVKDVDSQKLILN----DGTE----VPYGLLVWSTGVGPSTLVKSL 342
+++ +K V ++ + + DG++ +PYGLLVW+ G L K L
Sbjct: 324 IKIRTNTALKKVTAENIHVEVKNPDGSKQEEVIPYGLLVWAGGNRARPLTKKL 376
|
Catalyzes the oxidation of NADH. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 3 |
| >sp|Q9SKT7|NDB4_ARATH NAD(P)H dehydrogenase B4, mitochondrial OS=Arabidopsis thaliana GN=NDB4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 174/289 (60%), Gaps = 14/289 (4%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIA 121
K +VVVLGSGW+G + ++ YDV VSPRN +FTPLL S GT+E RS+ EPI
Sbjct: 63 KKKVVVLGSGWSGYSFLSYLNNPNYDVQVVSPRNFFLFTPLLPSVTNGTVEARSIVEPIR 122
Query: 122 RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLE-PWKFKISYDKLVIALGA 180
+ R+ G + + C ID N +HC + E +L+ +F + YD L++A+GA
Sbjct: 123 ----GLMRKKGFEYKEAECVKIDASNKKIHCRS--KEGSSLKGTTEFDMDYDILILAVGA 176
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
+ +TF GV+E+A FL+E A IR ++ + +P ++EEE+ ++LH VVVGGGP
Sbjct: 177 KPNTFNTPGVEEHAYFLKEAEDALNIRHSVIDCFERASLPNLTEEERKKILHFVVVGGGP 236
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGV 299
TGVEFS EL DF+++DV + Y V+++ +TL+EA + IL+ FD R+ +A + + G+
Sbjct: 237 TGVEFSAELHDFLVQDVAKIYPKVQEFTKITLLEAGDHILNMFDKRITAFAEEKFQRDGI 296
Query: 300 RL-----VRGIVKD-VDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSL 342
L V G+ D + +++ PYG++VWSTG+G ++K
Sbjct: 297 DLKTGSMVVGVTADEISTKERETGKIVSEPYGMVVWSTGIGSRPVIKDF 345
|
NAD(P)H dehydrogenase; more efficient on NADH. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|P40215|NDH1_YEAST External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (451), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 183/310 (59%), Gaps = 17/310 (5%)
Query: 40 DASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99
+A+PST Q+ Q S P + K +V+LGSGW L+K +DT+LY+VV VSPRN+ +F
Sbjct: 93 EANPST-QVPQ-SDTFPNGSKRKT-LVILGSGWGSVSLLKNLDTTLYNVVVVSPRNYFLF 149
Query: 100 TPLLASTCVGTLEFRSVAEPIARIQPAISREPGS-YFFLSHCAGIDTDNHVVHCETVTDE 158
TPLL ST VGT+E +S+ EP+ I R G +++ + +D +N + ++
Sbjct: 150 TPLLPSTPVGTIELKSIVEPVRTIA---RRSHGEVHYYEAEAYDVDPENKTIKVKSSAKN 206
Query: 159 LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218
+ + YD LV+ +GA+ +TFG GV E ++FL+E+ AQEIR K++ ++ +
Sbjct: 207 ----NDYDLDLKYDYLVVGVGAQPNTFGTPGVYEYSSFLKEISDAQEIRLKIMSSIEKAA 262
Query: 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NE 277
+ E++RLL VVVGGGPTGVEF+ EL D++ +D+R+ + I VTL+EA
Sbjct: 263 SLSPKDPERARLLSFVVVGGGPTGVEFAAELRDYVDQDLRKWMPELSKEIKVTLVEALPN 322
Query: 278 ILSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDG----TEVPYGLLVWSTG 332
IL+ FD L YA + + L ++ +VK VD+ + G +PYG+LVW+TG
Sbjct: 323 ILNMFDKYLVDYAQDLFKEEKIDLRLKTMVKKVDATTITAKTGDGDIENIPYGVLVWATG 382
Query: 333 VGPSTLVKSL 342
P + K+L
Sbjct: 383 NAPREVSKNL 392
|
External NADH dehydrogenase required for optimum cellular growth with a number of nonfermentable carbon sources, including ethanol. With NDE2, performes the mitochondrial oxidation of cytosolic NADH under these growth conditions. Regulates the mitochondrial glycerol-3-phosphate dehydrogenase, GUT2, also involved in cytosolic NADH oxydation. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 351 | ||||||
| 255569381 | 472 | Rotenone-insensitive NADH-ubiquinone oxi | 0.988 | 0.735 | 0.807 | 1e-155 | |
| 118488127 | 488 | unknown [Populus trichocarpa] | 0.968 | 0.696 | 0.792 | 1e-151 | |
| 357490831 | 566 | hypothetical protein MTR_5g071250 [Medic | 0.982 | 0.609 | 0.749 | 1e-149 | |
| 356500874 | 485 | PREDICTED: probable NADH dehydrogenase-l | 0.960 | 0.694 | 0.760 | 1e-148 | |
| 356553084 | 485 | PREDICTED: probable NADH dehydrogenase-l | 0.960 | 0.694 | 0.754 | 1e-146 | |
| 297826393 | 504 | NDA2 H dehydrogenase 2 [Arabidopsis lyra | 1.0 | 0.696 | 0.761 | 1e-146 | |
| 449450824 | 505 | PREDICTED: alternative NAD(P)H dehydroge | 1.0 | 0.695 | 0.747 | 1e-145 | |
| 15227684 | 508 | NADH dehydrogenase [Arabidopsis thaliana | 0.957 | 0.661 | 0.772 | 1e-145 | |
| 356566086 | 506 | PREDICTED: probable NADH dehydrogenase-l | 1.0 | 0.693 | 0.745 | 1e-144 | |
| 356539622 | 509 | PREDICTED: probable NADH dehydrogenase-l | 1.0 | 0.689 | 0.736 | 1e-144 |
| >gi|255569381|ref|XP_002525658.1| Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis] gi|223535094|gb|EEF36776.1| Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 286/354 (80%), Positives = 310/354 (87%), Gaps = 7/354 (1%)
Query: 1 MSLFKHLLRNPTAKSYSYSS---PSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPT 57
MS F +L+R T KS S S+ P +I N +++ L HF+T A P QY+GL PT
Sbjct: 1 MSWFTNLIRISTVKSASSSTKSLPPLITNPNFLISSLFHFSTHAHPPP----QYAGLPPT 56
Query: 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVA 117
K EKPR+VVLGSGWAGCRLMKGIDT LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVA
Sbjct: 57 KPGEKPRLVVLGSGWAGCRLMKGIDTKLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVA 116
Query: 118 EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIA 177
EPIARIQPAIS+EPGSYFFL++ IDT +H+VHCET TD T++PWKF ISYDKLVIA
Sbjct: 117 EPIARIQPAISKEPGSYFFLANSTAIDTHSHLVHCETATDGSSTMDPWKFDISYDKLVIA 176
Query: 178 LGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG 237
LGAEASTFGIHGVKE+A FLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG
Sbjct: 177 LGAEASTFGIHGVKEHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG 236
Query: 238 GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS 297
GGPTGVEFSGELSDFI RDVRQRY+HVKDYIHVTLIEANEILSSFDDRLRHYAT QL+KS
Sbjct: 237 GGPTGVEFSGELSDFITRDVRQRYAHVKDYIHVTLIEANEILSSFDDRLRHYATKQLTKS 296
Query: 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
GV+LVRGIVKDV QKL+L+DG+EVPYGLLVWSTGVGPS LVKSLDLPKSPGGR
Sbjct: 297 GVQLVRGIVKDVKPQKLVLSDGSEVPYGLLVWSTGVGPSHLVKSLDLPKSPGGR 350
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118488127|gb|ABK95883.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 278/351 (79%), Positives = 306/351 (87%), Gaps = 11/351 (3%)
Query: 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKAN 60
MSLF++L++ T+KS P + P N + T LSHFTTD T+Y+GL PTK +
Sbjct: 1 MSLFRNLIQLSTSKS----KPLLQNP-NFLFTSLSHFTTDTP------TRYAGLEPTKGD 49
Query: 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
EKPRVVVLGSGWAGCRLMKGIDT LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI
Sbjct: 50 EKPRVVVLGSGWAGCRLMKGIDTDLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 109
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
RIQPAIS+ PGSYFFL++C +DT+ H+VHCETVTD L T++PW+FKISYDKL+IALGA
Sbjct: 110 GRIQPAISKAPGSYFFLANCTSLDTEKHMVHCETVTDGLDTVDPWRFKISYDKLIIALGA 169
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
EA TFGIHGVKE+A FLREV HAQEIRRKLLLNLMLSD+PG+SEEEKSRLLHCVVVGGGP
Sbjct: 170 EALTFGIHGVKEHAIFLREVRHAQEIRRKLLLNLMLSDMPGLSEEEKSRLLHCVVVGGGP 229
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300
TGVEFSGELSDFI++DVRQ YSHVKDYIHVTLIEANEILSSFDD LR YAT QL+KSGV
Sbjct: 230 TGVEFSGELSDFILKDVRQTYSHVKDYIHVTLIEANEILSSFDDSLRRYATKQLTKSGVH 289
Query: 301 LVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
LVRGIVKDV QKLIL DGTEVPYGLLVWSTGVGPS+ VKSL+L KSPGGR
Sbjct: 290 LVRGIVKDVKPQKLILTDGTEVPYGLLVWSTGVGPSSFVKSLELSKSPGGR 340
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357490831|ref|XP_003615703.1| hypothetical protein MTR_5g071250 [Medicago truncatula] gi|355517038|gb|AES98661.1| hypothetical protein MTR_5g071250 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 269/359 (74%), Positives = 308/359 (85%), Gaps = 14/359 (3%)
Query: 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLI--------LTCLSHFTTDASPSTVQLTQYS 52
MSLF++L +KSY +++ + P N LT LS F+T ++P + +Y+
Sbjct: 1 MSLFRNL-----SKSYFFTTKQLFKPPNSTNPSHLFPSLTLLSRFST-STPGSTAPVRYA 54
Query: 53 GLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLE 112
LGPTK +EKPRVVVLG+GWAGCR MKG+D+++YD+VCVSPRNHMVFTPLLASTCVGTLE
Sbjct: 55 ALGPTKPHEKPRVVVLGTGWAGCRFMKGLDSNIYDIVCVSPRNHMVFTPLLASTCVGTLE 114
Query: 113 FRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYD 172
FRSVAEP+ARIQP IS+EPGS+FFL++C GI+ D H V CETVT+ +TL+PWKF ISYD
Sbjct: 115 FRSVAEPVARIQPTISKEPGSFFFLANCTGINADKHEVQCETVTEGTQTLDPWKFTISYD 174
Query: 173 KLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLH 232
KLVIALGA+ +TFGIHGV E+A FLREV+HAQEIRRKLLLNLM+SDVPGISEEEK RLLH
Sbjct: 175 KLVIALGAQPTTFGIHGVYEHAIFLREVYHAQEIRRKLLLNLMMSDVPGISEEEKKRLLH 234
Query: 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292
CVVVGGGPTGVEFSGELSDFIMRDVRQRY+HVKDYIHVTLIEANEILSSFDDRLRHYAT
Sbjct: 235 CVVVGGGPTGVEFSGELSDFIMRDVRQRYAHVKDYIHVTLIEANEILSSFDDRLRHYATN 294
Query: 293 QLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
QL+KSGVRLVRGIVKDV +K+ILNDGTEVPYGLLVWSTGVGPS + SLDLPKSPGGR
Sbjct: 295 QLTKSGVRLVRGIVKDVQEKKIILNDGTEVPYGLLVWSTGVGPSPFIHSLDLPKSPGGR 353
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500874|ref|XP_003519255.1| PREDICTED: probable NADH dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/351 (76%), Positives = 305/351 (86%), Gaps = 14/351 (3%)
Query: 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKAN 60
MS +HL S +SS +I S T LS F+T +P+ +++GLGPT+A+
Sbjct: 1 MSWLRHL-------SSKFSSTTIT--STRRFTSLSRFSTSTAPA-----RHAGLGPTQAH 46
Query: 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
EKPRVVVLGSGWAGCRLMKG+DT++YDVVCVSPRNHMVFTPLLASTCVGTLEFR+VAEPI
Sbjct: 47 EKPRVVVLGSGWAGCRLMKGLDTAIYDVVCVSPRNHMVFTPLLASTCVGTLEFRTVAEPI 106
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
ARIQPAISREPGSYFFL++C ID DNHVVHCE+VT+ + +PW+F +SYDKLVIALGA
Sbjct: 107 ARIQPAISREPGSYFFLANCTAIDADNHVVHCESVTEGAQAPDPWRFTVSYDKLVIALGA 166
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
+ +TFGIHGV E+A FLREV+HAQEIRRKLLLNLM+SDVPGI EEEK RLLHCVVVGGGP
Sbjct: 167 QPTTFGIHGVYEHAIFLREVYHAQEIRRKLLLNLMMSDVPGIEEEEKQRLLHCVVVGGGP 226
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300
TGVEFSGELSDFI+RDVRQRY+HVKDYIHVTLIEANEILSSFD RLR YAT QL+KSGVR
Sbjct: 227 TGVEFSGELSDFIVRDVRQRYAHVKDYIHVTLIEANEILSSFDVRLRQYATNQLTKSGVR 286
Query: 301 LVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
LVRGIVKDV+ +K+ILNDGTEVPYGLLVWSTGVGPS +++SLDLPK+PGGR
Sbjct: 287 LVRGIVKDVEEKKIILNDGTEVPYGLLVWSTGVGPSAIIRSLDLPKAPGGR 337
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553084|ref|XP_003544888.1| PREDICTED: probable NADH dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 265/351 (75%), Positives = 300/351 (85%), Gaps = 14/351 (3%)
Query: 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKAN 60
MS F+HL S +I S L+ L F+T +P +++GL PT+A+
Sbjct: 1 MSWFRHL---------STKFSAITTTSTHRLSLLPRFSTSTAP-----VRHAGLEPTQAH 46
Query: 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
EKPRVVVLGSGWAGCRLMKG+DT +YDVVCVSPRNHMVFTPLLASTCVGTLEFR+VAEPI
Sbjct: 47 EKPRVVVLGSGWAGCRLMKGLDTQIYDVVCVSPRNHMVFTPLLASTCVGTLEFRTVAEPI 106
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
ARIQPAISREPGSYFFL++C ID DNHVVHCE+VT+ + +PW+F ISYDKLVIALGA
Sbjct: 107 ARIQPAISREPGSYFFLANCTAIDADNHVVHCESVTEGAQAPDPWRFTISYDKLVIALGA 166
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
+ +TFGIHGV E+A FLREV+HAQEIRRKLLLNLM+SDVPGI EEEK RLLHCVVVGGGP
Sbjct: 167 QPTTFGIHGVYEHAIFLREVYHAQEIRRKLLLNLMMSDVPGIEEEEKQRLLHCVVVGGGP 226
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300
TGVEFSGELSDFI+RDVRQRY+HVKDYIHVTLIEANEILSSFD RLR YAT QL+KSGVR
Sbjct: 227 TGVEFSGELSDFIVRDVRQRYAHVKDYIHVTLIEANEILSSFDVRLRQYATNQLTKSGVR 286
Query: 301 LVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
LVRGIVKDV+ +K+ILNDGTEVPYGLLVWSTGVGPS +++SLDLPK+PGGR
Sbjct: 287 LVRGIVKDVEEKKIILNDGTEVPYGLLVWSTGVGPSAIIQSLDLPKAPGGR 337
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826393|ref|XP_002881079.1| NDA2 H dehydrogenase 2 [Arabidopsis lyrata subsp. lyrata] gi|297326918|gb|EFH57338.1| NDA2 H dehydrogenase 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 271/356 (76%), Positives = 300/356 (84%), Gaps = 5/356 (1%)
Query: 1 MSLFKHLLR-NPTAKSYS---YSSPSIIMPSNLILTCLSHFTTDAS-PSTVQLTQYSGLG 55
M L K+L R +PT+ S S+ S + S + + A P+ V +QY+GL
Sbjct: 1 MFLIKNLTRISPTSSSIVTRFRSTGSYTLASRFCTASETQIQSPAKIPNGVDRSQYAGLA 60
Query: 56 PTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS 115
PT+ EKPRVVVLGSGWAGCRLMKGIDT+LYDVVCVSPRNHMVFTPLLASTCVGTLEFRS
Sbjct: 61 PTREGEKPRVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS 120
Query: 116 VAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLV 175
VAEPI+RIQPAISREPGSYFFL++C+ +D + H VHCET+TD L TL+PWKFKI+YDKLV
Sbjct: 121 VAEPISRIQPAISREPGSYFFLANCSRLDAEAHEVHCETLTDGLNTLKPWKFKIAYDKLV 180
Query: 176 IALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235
+A GAEASTFGIHGV ENA FLREVHHAQEIRRKLLLNLMLSD PGIS+EEK RLLHCVV
Sbjct: 181 VASGAEASTFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGISKEEKKRLLHCVV 240
Query: 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS 295
VGGGPTGVEFSGELSDFIM+DVRQRYSHVKD IHVTLIEA +ILSSFDDRLR YA QL+
Sbjct: 241 VGGGPTGVEFSGELSDFIMKDVRQRYSHVKDDIHVTLIEARDILSSFDDRLRRYAIKQLN 300
Query: 296 KSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
KSGVR VRGIVKDV SQKLIL+DGTEVPYGLLVWSTGVGPS+ V+SL LPK P GR
Sbjct: 301 KSGVRFVRGIVKDVQSQKLILDDGTEVPYGLLVWSTGVGPSSFVRSLGLPKDPTGR 356
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450824|ref|XP_004143162.1| PREDICTED: alternative NAD(P)H dehydrogenase 1, mitochondrial-like [Cucumis sativus] gi|449523139|ref|XP_004168582.1| PREDICTED: alternative NAD(P)H dehydrogenase 1, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/357 (74%), Positives = 303/357 (84%), Gaps = 6/357 (1%)
Query: 1 MSLFKHLLR-NPTAKSYSYSSPSIIMPSNLILT-CLSHFTT----DASPSTVQLTQYSGL 54
M+ F++L + +P+ ++P +PS T LSHF++ DAS S L++ GL
Sbjct: 1 MAWFRNLNKLSPSKPPLRSTNPHPFLPSTTPFTFLLSHFSSQPISDASASAEALSRPPGL 60
Query: 55 GPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFR 114
GPT + EKPRVVVLGSGWAGCRLMKG+DTS+YDV CVSPRNHMVFTPLLASTCVGTLEFR
Sbjct: 61 GPTASGEKPRVVVLGSGWAGCRLMKGLDTSIYDVACVSPRNHMVFTPLLASTCVGTLEFR 120
Query: 115 SVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKL 174
SVAEPI RIQP+ISREPGSYFFL++C ++TD H V CETVTD TLEPW+FK+SYDKL
Sbjct: 121 SVAEPIGRIQPSISREPGSYFFLANCTSVNTDEHSVQCETVTDGSNTLEPWRFKLSYDKL 180
Query: 175 VIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCV 234
+IALG++ TFGIHGVKE+A FLREV+HAQEIRRKLLLNLMLSDVPGIS EEK RLLHCV
Sbjct: 181 IIALGSQPLTFGIHGVKEHAIFLREVYHAQEIRRKLLLNLMLSDVPGISVEEKRRLLHCV 240
Query: 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294
VVGGGPTGVEFSGELSDFI++DV QRYSHVKDYI VTLIEANEILSSFDDRLRHYAT QL
Sbjct: 241 VVGGGPTGVEFSGELSDFIIKDVTQRYSHVKDYIQVTLIEANEILSSFDDRLRHYATKQL 300
Query: 295 SKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
+KSGV+LVRGIVKDV Q +ILNDG+EVPYGLLVWSTGVGPS V SL++PKSPGGR
Sbjct: 301 TKSGVQLVRGIVKDVKPQSIILNDGSEVPYGLLVWSTGVGPSPFVNSLEVPKSPGGR 357
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15227684|ref|NP_180560.1| NADH dehydrogenase [Arabidopsis thaliana] gi|75318710|sp|O80874.1|NDA2_ARATH RecName: Full=Alternative NAD(P)H dehydrogenase 2, mitochondrial; Flags: Precursor gi|3420052|gb|AAC31853.1| putative NADH dehydrogenase (ubiquinone oxidoreductase) [Arabidopsis thaliana] gi|330253238|gb|AEC08332.1| NADH dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/348 (77%), Positives = 292/348 (83%), Gaps = 12/348 (3%)
Query: 8 LRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPST----VQLTQYSGLGPTKANEKP 63
RN + S SY+ S C + T SP+ V +QYSGL PT+ EKP
Sbjct: 21 FRNSGSSSLSYTLASRF--------CTAQETQIQSPAKIPNDVDRSQYSGLPPTREGEKP 72
Query: 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARI 123
RVVVLGSGWAGCRLMKGIDT+LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI+RI
Sbjct: 73 RVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPISRI 132
Query: 124 QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183
QPAISREPGS+FFL++C+ +D D H VHCET+TD L TL+PWKFKI+YDKLVIA GAEAS
Sbjct: 133 QPAISREPGSFFFLANCSRLDADAHEVHCETLTDGLNTLKPWKFKIAYDKLVIASGAEAS 192
Query: 184 TFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGV 243
TFGIHGV ENA FLREVHHAQEIRRKLLLNLMLSD PGIS+EEK RLLHCVVVGGGPTGV
Sbjct: 193 TFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGISKEEKRRLLHCVVVGGGPTGV 252
Query: 244 EFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVR 303
EFSGELSDFIM+DVRQRY+HVKD IHVTLIEA +ILSSFDDRLR YA QL+KSGVR VR
Sbjct: 253 EFSGELSDFIMKDVRQRYAHVKDDIHVTLIEARDILSSFDDRLRRYAIKQLNKSGVRFVR 312
Query: 304 GIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
GIVKDV SQKLIL+DGTEVPYGLLVWSTGVGPS V+SL LPK P GR
Sbjct: 313 GIVKDVQSQKLILDDGTEVPYGLLVWSTGVGPSPFVRSLGLPKDPTGR 360
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566086|ref|XP_003551266.1| PREDICTED: probable NADH dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 267/358 (74%), Positives = 298/358 (83%), Gaps = 7/358 (1%)
Query: 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLI--LTCLSHF----TTDASPSTVQLT-QYSG 53
M+ ++L + T ++ S P P L+ T LSHF T + P + YSG
Sbjct: 1 MAWLRNLSKFATKRASSSQRPKNTDPFCLLPSFTFLSHFSSTNTIEEKPCVEPVEYNYSG 60
Query: 54 LGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEF 113
L PT+ +EKPRVVVLGSGWAGCRLMKG+D +YD+VCVSPRNHMVFTPLLASTCVGTLEF
Sbjct: 61 LEPTRPHEKPRVVVLGSGWAGCRLMKGLDPRVYDIVCVSPRNHMVFTPLLASTCVGTLEF 120
Query: 114 RSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDK 173
RSVAEPI RIQPAISREPGSYFFL++C ID NH+VHCETVT+ + T+ PWKF ISYDK
Sbjct: 121 RSVAEPIGRIQPAISREPGSYFFLANCTQIDAHNHMVHCETVTEGVETIAPWKFTISYDK 180
Query: 174 LVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHC 233
LVIALG++ STFGI GVKE+A FLREVHHAQEIRRKLLLNLMLSDVPGISEEEK RLLHC
Sbjct: 181 LVIALGSQPSTFGIQGVKEHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKQRLLHC 240
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
VVVGGGPTGVEFSGELSDFI RDVRQRY HVKDYI VTLIEANEILSSFDDRLR YAT Q
Sbjct: 241 VVVGGGPTGVEFSGELSDFITRDVRQRYVHVKDYIRVTLIEANEILSSFDDRLRRYATKQ 300
Query: 294 LSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
L+KSGVRLVRGIVKDV QK++LNDG+EVPYGLLVWSTGVGP +++SLDLPK+PGGR
Sbjct: 301 LTKSGVRLVRGIVKDVKPQKIVLNDGSEVPYGLLVWSTGVGPLPIIQSLDLPKAPGGR 358
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539622|ref|XP_003538295.1| PREDICTED: probable NADH dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 266/361 (73%), Positives = 297/361 (82%), Gaps = 10/361 (2%)
Query: 1 MSLFKHLLRNPTAKSYSYSS--------PSIIMPSNLILTCLSHFTTDASPST--VQLTQ 50
M+ ++L + T K S SS P ++PS + S T + P V+
Sbjct: 1 MAWLRNLSKFATMKRASSSSSQRPKNTDPFCLLPSFTFFSNFSTNTIEEKPCVKPVEYNN 60
Query: 51 YSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGT 110
YSGL PT+ +EKPRVVVLGSGWAGCRLMKG+D +YD+VCVSPRNHMVFTPLLASTCVGT
Sbjct: 61 YSGLQPTRPHEKPRVVVLGSGWAGCRLMKGLDPRVYDIVCVSPRNHMVFTPLLASTCVGT 120
Query: 111 LEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKIS 170
LEFRSVAEPI RIQPAISREPGSYFFL++C ID NH+VHCETVT+ + T+ PWKF IS
Sbjct: 121 LEFRSVAEPIGRIQPAISREPGSYFFLANCTQIDAHNHMVHCETVTEGVETIAPWKFTIS 180
Query: 171 YDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRL 230
YDKLVIALG++ STFGI GVKE+A FLREVHHAQEIRRKLLLNLMLSDVPGISEEEK RL
Sbjct: 181 YDKLVIALGSQPSTFGIQGVKEHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKQRL 240
Query: 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 290
LHCVVVGGGPTGVEFSGELSDFI +DVRQRY HVKDYI VTLIEANEILSSFDDRLR YA
Sbjct: 241 LHCVVVGGGPTGVEFSGELSDFITKDVRQRYVHVKDYIRVTLIEANEILSSFDDRLRRYA 300
Query: 291 TTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG 350
T QL+KSGVRLVRGIVKDV QK+ LNDG+EVPYGLLVWSTGVGP +++SLDLPK+PGG
Sbjct: 301 TKQLTKSGVRLVRGIVKDVKPQKISLNDGSEVPYGLLVWSTGVGPLPMIQSLDLPKAPGG 360
Query: 351 R 351
R
Sbjct: 361 R 361
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 351 | ||||||
| TAIR|locus:2045708 | 508 | NDA2 "AT2G29990" [Arabidopsis | 0.880 | 0.608 | 0.841 | 1.5e-138 | |
| TAIR|locus:2007427 | 510 | NDA1 "AT1G07180" [Arabidopsis | 0.860 | 0.592 | 0.827 | 2.9e-135 | |
| DICTYBASE|DDB_G0270104 | 451 | DDB_G0270104 "putative NADH de | 0.894 | 0.696 | 0.378 | 4.8e-55 | |
| TAIR|locus:2119667 | 580 | NDB3 "AT4G21490" [Arabidopsis | 0.837 | 0.506 | 0.403 | 1.3e-54 | |
| TAIR|locus:2123713 | 571 | NDB1 "AT4G28220" [Arabidopsis | 0.820 | 0.504 | 0.396 | 8.9e-54 | |
| DICTYBASE|DDB_G0290197 | 654 | DDB_G0290197 "putative NADH de | 0.675 | 0.362 | 0.381 | 1.1e-50 | |
| TAIR|locus:2051431 | 582 | NDB4 "AT2G20800" [Arabidopsis | 0.777 | 0.469 | 0.400 | 2.2e-50 | |
| SGD|S000004753 | 560 | NDE1 "Mitochondrial external N | 0.834 | 0.523 | 0.383 | 1.1e-48 | |
| SGD|S000002243 | 545 | NDE2 "Mitochondrial external N | 0.857 | 0.552 | 0.388 | 1.4e-46 | |
| POMBASE|SPBC947.15c | 551 | SPBC947.15c "mitochondrial NAD | 0.811 | 0.517 | 0.379 | 1.8e-46 |
| TAIR|locus:2045708 NDA2 "AT2G29990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1356 (482.4 bits), Expect = 1.5e-138, P = 1.5e-138
Identities = 260/309 (84%), Positives = 280/309 (90%)
Query: 43 PSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL 102
P+ V +QYSGL PT+ EKPRVVVLGSGWAGCRLMKGIDT+LYDVVCVSPRNHMVFTPL
Sbjct: 52 PNDVDRSQYSGLPPTREGEKPRVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPL 111
Query: 103 LASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162
LASTCVGTLEFRSVAEPI+RIQPAISREPGS+FFL++C+ +D D H VHCET+TD L TL
Sbjct: 112 LASTCVGTLEFRSVAEPISRIQPAISREPGSFFFLANCSRLDADAHEVHCETLTDGLNTL 171
Query: 163 EPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGI 222
+PWKFKI+YDKLVIA GAEASTFGIHGV ENA FLREVHHAQEIRRKLLLNLMLSD PGI
Sbjct: 172 KPWKFKIAYDKLVIASGAEASTFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGI 231
Query: 223 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF 282
S+EEK RLLHCVVVGGGPTGVEFSGELSDFIM+DVRQRY+HVKD IHVTLIEA +ILSSF
Sbjct: 232 SKEEKRRLLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYAHVKDDIHVTLIEARDILSSF 291
Query: 283 DDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSL 342
DDRLR YA QL+KSGVR VRGIVKDV SQKLIL+DGTEVPYGLLVWSTGVGPS V+SL
Sbjct: 292 DDRLRRYAIKQLNKSGVRFVRGIVKDVQSQKLILDDGTEVPYGLLVWSTGVGPSPFVRSL 351
Query: 343 DLPKSPGGR 351
LPK P GR
Sbjct: 352 GLPKDPTGR 360
|
|
| TAIR|locus:2007427 NDA1 "AT1G07180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
Identities = 250/302 (82%), Positives = 276/302 (91%)
Query: 50 QYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVG 109
+Y GL PTK EKPRV+VLGSGWAGCR++KGIDTS+YDVVCVSPRNHMVFTPLLASTCVG
Sbjct: 61 RYDGLAPTKEGEKPRVLVLGSGWAGCRVLKGIDTSIYDVVCVSPRNHMVFTPLLASTCVG 120
Query: 110 TLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKI 169
TLEFRSVAEPI+RIQPAISREPGSY+FL++C+ +D DNH VHCETVT+ TL+PWKFKI
Sbjct: 121 TLEFRSVAEPISRIQPAISREPGSYYFLANCSKLDADNHEVHCETVTEGSSTLKPWKFKI 180
Query: 170 SYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSR 229
+YDKLV+A GAEASTFGI+GV ENA FLREVHHAQEIRRKLLLNLMLS+VPGI E+EK R
Sbjct: 181 AYDKLVLACGAEASTFGINGVLENAIFLREVHHAQEIRRKLLLNLMLSEVPGIGEDEKKR 240
Query: 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHY 289
LLHCVVVGGGPTGVEFSGELSDFIM+DVRQRYSHVKD I VTLIEA +ILSSFDDRLRHY
Sbjct: 241 LLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYSHVKDDIRVTLIEARDILSSFDDRLRHY 300
Query: 290 ATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPG 349
A QL+KSGV+LVRGIVK+V QKLIL+DGTEVPYG LVWSTGVGPS+ V+SLD PK PG
Sbjct: 301 AIKQLNKSGVKLVRGIVKEVKPQKLILDDGTEVPYGPLVWSTGVGPSSFVRSLDFPKDPG 360
Query: 350 GR 351
GR
Sbjct: 361 GR 362
|
|
| DICTYBASE|DDB_G0270104 DDB_G0270104 "putative NADH dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 124/328 (37%), Positives = 196/328 (59%)
Query: 28 NLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYD 87
NLI+ ++ + + S+++ K E ++++LG GW +K +++ YD
Sbjct: 5 NLIIRGRNYISDHLTKSSLEKAIIRRQKRGKVIENEKLIILGCGWGSYSFLKNLNSIKYD 64
Query: 88 VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHCAGIDTD 146
+ +SPRNH +FTPLL S+ VGTLEFRS+AEP+ +R+ + ++ + I+ +
Sbjct: 65 ITVISPRNHFLFTPLLTSSAVGTLEFRSIAEPVRT-----TRDINEFKYIQASVTSINPE 119
Query: 147 NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEI 206
N+ V V +P F++ YDKLVI +G+ +TFGI GV+ENA FL+E+HHA+EI
Sbjct: 120 NNSV---LVKSTFHNEKP--FEMKYDKLVIGVGSRNNTFGIKGVEENANFLKELHHAREI 174
Query: 207 RRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK- 265
R+K++ + +P +S EE+ RLL V+VGGG TG+EF+ EL+DF D+ + + V
Sbjct: 175 RQKIIECFERASLPDVSTEERERLLSFVIVGGGATGIEFTSELNDFFSEDLSRLFPFVPV 234
Query: 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTEVP 323
+ + + L+EA+ +ILS+FD +L A SG+ + VK+V +IL++G +P
Sbjct: 235 NEVKIILLEASGKILSTFDQKLVKKALINFRNSGIDVRTHSSVKEVLKDYVILDNGDRIP 294
Query: 324 YGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
YGLLVWSTG+G LVK+ K R
Sbjct: 295 YGLLVWSTGIGQHPLVKNSSFEKDSHDR 322
|
|
| TAIR|locus:2119667 NDB3 "AT4G21490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 123/305 (40%), Positives = 183/305 (60%)
Query: 51 YSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGT 110
YS G K +VV+LG+GWAG +K ++ S Y+V +SPRN+ FTPLL S GT
Sbjct: 44 YSNNGVETKTRKRKVVLLGTGWAGASFLKTLNNSSYEVQVISPRNYFAFTPLLPSVTCGT 103
Query: 111 LEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKIS 170
+E RSV EPI I A + F + C ID + V+C + + + +F +
Sbjct: 104 VEARSVVEPIRNI--ARKQNVEMSFLEAECFKIDPGSKKVYCRS-KQGVNSKGKKEFDVD 160
Query: 171 YDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRL 230
YD LVIA GA+++TF I GV+EN FL+EV AQ IR ++ + + +PG++E+E+ R+
Sbjct: 161 YDYLVIATGAQSNTFNIPGVEENCHFLKEVEDAQRIRSTVIDSFEKASLPGLNEQERKRM 220
Query: 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHY 289
LH VVVGGGPTGVEF+ EL DF+ D+ + Y K+ + +TL+EA + IL+ FD R+ +
Sbjct: 221 LHFVVVGGGPTGVEFASELHDFVNEDLVKLYPKAKNLVQITLLEAADHILTMFDKRITEF 280
Query: 290 ATTQLSKSGVRLVRG--IVKDVD---SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344
A + ++ G+ + G +VK D S K + + +PYG++VWSTG+G ++K D
Sbjct: 281 AEEKFTRDGIDVKLGSMVVKVNDKEISAKTKAGEVSTIPYGMIVWSTGIGTRPVIK--DF 338
Query: 345 PKSPG 349
K G
Sbjct: 339 MKQIG 343
|
|
| TAIR|locus:2123713 NDB1 "AT4G28220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 119/300 (39%), Positives = 182/300 (60%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
++K +VVVLG+GWAG +K +D + YDV VSP+N+ FTPLL S GT+E RS+ E
Sbjct: 47 HKKKKVVVLGTGWAGISFLKDLDITSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIVES 106
Query: 120 IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIAL 178
+ I + E + + C ID N VHC V D+ + +F + YD L++A+
Sbjct: 107 VRNITKKKNGE--IELWEADCFKIDHVNQKVHCRPVFKDDPEASQ--EFSLGYDYLIVAV 162
Query: 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238
GA+ +TFG GV EN FL+EV AQ IRR ++ + +PG++EE++ R LH V+VGG
Sbjct: 163 GAQVNTFGTPGVLENCHFLKEVEDAQRIRRGVIDCFEKAILPGLTEEQRRRKLHFVIVGG 222
Query: 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKS 297
GPTGVEF+ EL DFI+ D+ + Y VK+ + +TLI++ + IL++FD+R+ +A + ++
Sbjct: 223 GPTGVEFAAELHDFIIEDITKIYPSVKELVKITLIQSGDHILNTFDERISSFAEQKFTRD 282
Query: 298 GVRLVRGI----VKDVDSQKLILNDG--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
G+ + G+ V D D + + G +P+GL++WSTGVG ++ GGR
Sbjct: 283 GIDVQTGMRVMSVTDKDITVKVKSSGELVSIPHGLILWSTGVGTRPVISDFMEQVGQGGR 342
|
|
| DICTYBASE|DDB_G0290197 DDB_G0290197 "putative NADH dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 93/244 (38%), Positives = 151/244 (61%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
N++ R++VLG+GWA ++ ID + Y++V VSPRN+ +FTP+L VG++E RS+ EP
Sbjct: 126 NKRERIIVLGTGWASLSFIQEIDLNKYEIVVVSPRNYFLFTPMLTEATVGSVEVRSIIEP 185
Query: 120 IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179
I R+ ++ P +Y + C ID N+ + ET D K KI YD+LV+A+G
Sbjct: 186 IRRVLSRLTSRPTTYIE-AECTNIDYVNNCIEIET-HDGSEA----KAKIQYDRLVVAVG 239
Query: 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239
+ FG GV+E+ +L+E A +IR+K++ ++ PG SEEEK RLL +VVGGG
Sbjct: 240 SVPQCFGTKGVEEHCIYLKEAMDAHKIRQKIMDCFERANFPGTSEEEKKRLLSFLVVGGG 299
Query: 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSG 298
PT +E S L D+I D+ + + H+ Y +TL++ A+ +L++FD ++ +Y Q + G
Sbjct: 300 PTSIEGSSALYDYIKEDLSKMFPHLSKYPKITLVQSADHLLNTFDLKISNYTEKQFERIG 359
Query: 299 VRLV 302
+ ++
Sbjct: 360 IEVL 363
|
|
| TAIR|locus:2051431 NDB4 "AT2G20800" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 115/287 (40%), Positives = 176/287 (61%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIA 121
K +VVVLGSGW+G + ++ YDV VSPRN +FTPLL S GT+E RS+ EPI
Sbjct: 63 KKKVVVLGSGWSGYSFLSYLNNPNYDVQVVSPRNFFLFTPLLPSVTNGTVEARSIVEPIR 122
Query: 122 RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLE-PWKFKISYDKLVIALGA 180
+ R+ G + + C ID N +HC + E +L+ +F + YD L++A+GA
Sbjct: 123 ----GLMRKKGFEYKEAECVKIDASNKKIHCRS--KEGSSLKGTTEFDMDYDILILAVGA 176
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
+ +TF GV+E+A FL+E A IR ++ + +P ++EEE+ ++LH VVVGGGP
Sbjct: 177 KPNTFNTPGVEEHAYFLKEAEDALNIRHSVIDCFERASLPNLTEEERKKILHFVVVGGGP 236
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGV 299
TGVEFS EL DF+++DV + Y V+++ +TL+EA + IL+ FD R+ +A + + G+
Sbjct: 237 TGVEFSAELHDFLVQDVAKIYPKVQEFTKITLLEAGDHILNMFDKRITAFAEEKFQRDGI 296
Query: 300 RLVRG-IVKDVDSQKLILND---GTEV--PYGLLVWSTGVGPSTLVK 340
L G +V V + ++ + G V PYG++VWSTG+G ++K
Sbjct: 297 DLKTGSMVVGVTADEISTKERETGKIVSEPYGMVVWSTGIGSRPVIK 343
|
|
| SGD|S000004753 NDE1 "Mitochondrial external NADH dehydrogenase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 119/310 (38%), Positives = 183/310 (59%)
Query: 40 DASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99
+A+PST Q+ Q S P + K +V+LGSGW L+K +DT+LY+VV VSPRN+ +F
Sbjct: 93 EANPST-QVPQ-SDTFPNGSKRKT-LVILGSGWGSVSLLKNLDTTLYNVVVVSPRNYFLF 149
Query: 100 TPLLASTCVGTLEFRSVAEPIARIQPAISREPGS-YFFLSHCAGIDTDNHVVHCETVTDE 158
TPLL ST VGT+E +S+ EP+ I R G +++ + +D +N + ++
Sbjct: 150 TPLLPSTPVGTIELKSIVEPVRTIA---RRSHGEVHYYEAEAYDVDPENKTIKVKSSAKN 206
Query: 159 LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218
+ + YD LV+ +GA+ +TFG GV E ++FL+E+ AQEIR K++ ++ +
Sbjct: 207 ----NDYDLDLKYDYLVVGVGAQPNTFGTPGVYEYSSFLKEISDAQEIRLKIMSSIEKAA 262
Query: 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NE 277
+ E++RLL VVVGGGPTGVEF+ EL D++ +D+R+ + I VTL+EA
Sbjct: 263 SLSPKDPERARLLSFVVVGGGPTGVEFAAELRDYVDQDLRKWMPELSKEIKVTLVEALPN 322
Query: 278 ILSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGT----EVPYGLLVWSTG 332
IL+ FD L YA + + L ++ +VK VD+ + G +PYG+LVW+TG
Sbjct: 323 ILNMFDKYLVDYAQDLFKEEKIDLRLKTMVKKVDATTITAKTGDGDIENIPYGVLVWATG 382
Query: 333 VGPSTLVKSL 342
P + K+L
Sbjct: 383 NAPREVSKNL 392
|
|
| SGD|S000002243 NDE2 "Mitochondrial external NADH dehydrogenase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 127/327 (38%), Positives = 185/327 (56%)
Query: 34 LSHFTTDASPSTVQLTQYSGLGPTK--------AN--EKPRVVVLGSGWAGCRLMKGIDT 83
L+ +TT A V Y P K AN +K +V+LG+GW L+K +DT
Sbjct: 59 LTFYTTLAGTLYVSYELYKESNPPKQVPQSTAFANGLKKKELVILGTGWGAISLLKKLDT 118
Query: 84 SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHCAG 142
SLY+V VSPR+ +FTPLL ST VGT+E +S+ EP+ I R PG ++ +
Sbjct: 119 SLYNVTVVSPRSFFLFTPLLPSTPVGTIEMKSIVEPVRSIA---RRTPGEVHYIEAEALD 175
Query: 143 IDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHH 202
+D V ++V+++ E + +SYD LV+++GA+ +TF I GV NA FL+E+
Sbjct: 176 VDPKAKKVMVQSVSED----EYFVSSLSYDYLVVSVGAKTTTFNIPGVYGNANFLKEIED 231
Query: 203 AQEIRRKLLLNL-MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261
AQ IR KL+ + S P +++ E+ RLL VVVGGGPTGVEF+ EL D+I +D+R+
Sbjct: 232 AQNIRMKLMKTIEQASSFP-VNDPERKRLLTFVVVGGGPTGVEFAAELQDYINQDLRKWM 290
Query: 262 SHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKL-ILND 318
+ + V LIEA IL+ FD L YA ++ + L V VK V+ + L +
Sbjct: 291 PDLSKEMKVILIEALPNILNMFDKTLIKYAEDLFARDEIDLQVNTAVKVVEPTYIRTLQN 350
Query: 319 G---TEVPYGLLVWSTGVGPSTLVKSL 342
G T++ YG+LVW+TG P K+L
Sbjct: 351 GQTNTDIEYGMLVWATGNEPIDFSKTL 377
|
|
| POMBASE|SPBC947.15c SPBC947.15c "mitochondrial NADH dehydrogenase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 115/303 (37%), Positives = 169/303 (55%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIA 121
K +VVLGSGW +K +D SLY++ VSPR+H +FTP+L S VGTL S+ EPI
Sbjct: 90 KKNIVVLGSGWGAVAAIKNLDPSLYNITLVSPRDHFLFTPMLPSCTVGTLRLPSITEPIV 149
Query: 122 RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181
+ +P S + C IDT V T+ E + I YD LV A+GA
Sbjct: 150 ALFKG-KIDP-SNIHQAECTAIDTSAKKV---TIRGTTEANEGKEAVIPYDTLVFAIGAG 204
Query: 182 ASTFGIHGVKENATFLREVHHAQEIRRKLLLNL-MLSDVPGISEEEKSRLLHCVVVGGGP 240
TFGI GV+++ FL+E A+++ ++ L + +S EE++RLLH VVGGGP
Sbjct: 205 NQTFGIQGVRDHGCFLKEAGDAKKVFNRIFEILEQVRFNKDLSPEERARLLHITVVGGGP 264
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGV 299
TG+EF+ E+ DFI DV+ + ++ IHVTLIEA +L F L Y +
Sbjct: 265 TGMEFAAEMQDFIDNDVKDMFPELQKDIHVTLIEAAPGVLPMFTKSLITYTENLFKNLNI 324
Query: 300 RLV-RGIVKDVDSQKLILN----DGT----EVPYGLLVWSTGVGPSTLVKSL--DLPKSP 348
+++ + +VKDV+ + LI+ DG+ E+PYG+LVW+ G+ L ++L +P+
Sbjct: 325 KIMTKTVVKDVNEKNLIVQKTNPDGSKAMQEIPYGMLVWAAGITARPLTRTLMSSIPEQS 384
Query: 349 GGR 351
G R
Sbjct: 385 GAR 387
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O80874 | NDA2_ARATH | 1, ., 6, ., -, ., - | 0.7729 | 0.9572 | 0.6614 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 351 | |||
| PTZ00318 | 424 | PTZ00318, PTZ00318, NADH dehydrogenase-like protei | 1e-107 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 8e-66 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 4e-28 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 6e-15 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 2e-13 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 6e-09 | |
| COG1251 | 793 | COG1251, NirB, NAD(P)H-nitrite reductase [Energy p | 2e-08 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 2e-07 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 2e-07 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 4e-06 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 7e-05 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 1e-04 | |
| TIGR01424 | 446 | TIGR01424, gluta_reduc_2, glutathione-disulfide re | 5e-04 |
| >gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 319 bits (820), Expect = e-107
Identities = 131/298 (43%), Positives = 188/298 (63%), Gaps = 7/298 (2%)
Query: 56 PTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS 115
T +KP VVVLG+GWAG ++ +D Y++ +SPRNHM+FTPLL T GTLEFRS
Sbjct: 4 RTARLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRS 63
Query: 116 VAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLV 175
+ EP+ +PA+++ P + + + +D + V C V+ F + YDKLV
Sbjct: 64 ICEPV---RPALAKLP-NRYLRAVVYDVDFEEKRVKCGVVSKSNNANVN-TFSVPYDKLV 118
Query: 176 IALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235
+A GA +TF I GV+E A FL+EV+HA+ IR++++ + + +P S EE+ RLLH VV
Sbjct: 119 VAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVV 178
Query: 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQL 294
VGGGPTGVEF+ EL+DF DVR + + VT++EA +E+L SFD LR Y +L
Sbjct: 179 VGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRL 238
Query: 295 SKSGVRLV-RGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
+ GV + + VK+V ++++L DG +P GL+VWSTGVGP L K L + K+ GR
Sbjct: 239 RRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGR 296
|
Length = 424 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 8e-66
Identities = 99/296 (33%), Positives = 143/296 (48%), Gaps = 25/296 (8%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
K R+V+LG G+ G K + L ++ V R++ +FTPLL GTL +A P
Sbjct: 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIP 62
Query: 120 IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179
+ + + + F ID D V + + ISYD LV+ALG
Sbjct: 63 LRAL---LRKSGNVQFVQGEVTDIDRDAKKVTLADLGE-----------ISYDYLVVALG 108
Query: 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239
+E + FGI G E A L+ + A +RR LL + EE+ LL V+VGGG
Sbjct: 109 SETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKAS----QEEDDRALLTIVIVGGG 164
Query: 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSG 298
PTGVE +GEL++ + R ++ ++ + V L+EA IL F +L YA L K G
Sbjct: 165 PTGVELAGELAERLHRLLK-KFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLG 223
Query: 299 VRLVRGI-VKDVDSQKLILNDG-TEVPYGLLVWSTGVGPSTLVKSL-DLPKSPGGR 351
V ++ G V +V + L DG E+P +VW+ GV S L+K L L GR
Sbjct: 224 VEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGR 279
|
Length = 405 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-28
Identities = 64/299 (21%), Positives = 101/299 (33%), Gaps = 52/299 (17%)
Query: 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVS--PRNHMVFTPLLASTCVGTLEFRSVAEPIA 121
VV++G G AG + V + L + E +A +A
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60
Query: 122 RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181
+ + ID V + V +I+YDKL+IA GA
Sbjct: 61 LPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETG--------REITYDKLIIATGAR 112
Query: 182 ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241
GI GV LR V + EI L VVVGGG
Sbjct: 113 PRIPGIPGV--EVATLRGVIDSDEILELL-----------------ELPKRVVVVGGGYI 153
Query: 242 GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDD-----RLRHYATTQLS 295
G+E + L+ VT++E + +L+ DD L L
Sbjct: 154 GLELAAALAKLGK--------------EVTVVERRDRLLARADDEISAALLEKLEKLLLG 199
Query: 296 KSGVRLVRGIVKDVDSQK--LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGR 351
+ + +V +VK D + + L DG E+ +++ + G P+T L++ + G
Sbjct: 200 VTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNTELLEQAGVELDERGY 258
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 6e-15
Identities = 61/274 (22%), Positives = 96/274 (35%), Gaps = 48/274 (17%)
Query: 86 YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDT 145
V ++P + ++ +L G + + R+ +R+ G+ F ++ GID
Sbjct: 26 VRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRL----ARQAGARFVIAEATGIDP 81
Query: 146 DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA-------TFLR 198
D V L P +SYD L + +G+ G+ G + A FL
Sbjct: 82 DRRKVL-------LANRPP----LSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLA 130
Query: 199 EVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258
E S + VVGGG GVE + L R
Sbjct: 131 RWEALLE-----------------SADAPPGTKRLAVVGGGAAGVEIALAL--------R 165
Query: 259 QRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILN 317
+R VTLI +L F ++R L++ G+ + G V LIL
Sbjct: 166 RRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGALILA 225
Query: 318 DGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
DG +P ++W+TG + LP G
Sbjct: 226 DGRTLPADAILWATGARAPPWLAESGLPLDEDGF 259
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 2e-13
Identities = 64/296 (21%), Positives = 99/296 (33%), Gaps = 64/296 (21%)
Query: 65 VVVLGSGWAGCRLMKGIDTSLYD----VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
+V++G G AG + L ++ P+ PL + +
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSL-----YVGGGIASLED 55
Query: 121 ARIQPAISREPGSYFFLSHCA-GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179
R P +R G ID +N VV + D +I YD LV+A G
Sbjct: 56 LRYPPRFNRATGIDVRTGTEVTSIDPENKVV---LLDDG---------EIEYDYLVLATG 103
Query: 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239
A E LR A+ ++ E + VVVG G
Sbjct: 104 ARP-RPPPISDWEGVVTLRLREDAEALKGGA--------------EPPKDV---VVVGAG 145
Query: 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDR-LRHYATTQLSKS 297
P G+E +R VTLIEA + D + L K
Sbjct: 146 PIGLE--------AAEAAAKR------GKKVTLIEAADRLGGQLLDPEVAEELAELLEKY 191
Query: 298 GVRLVRGI-VKDVD-------SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345
GV L+ G V V+ ++++ DG E+ L++ G P+ ++ + LP
Sbjct: 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALP 247
|
Length = 415 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-09
Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 36/186 (19%)
Query: 166 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 224
++ SYD L+++ GA I G+ + F LR + I++ + +
Sbjct: 87 TYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYI-------------D 133
Query: 225 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SF 282
+ K + V++GGG G+E + +R+R +VTLI + IL+ F
Sbjct: 134 KNKVE--NVVIIGGGYIGIE--------MAEALRER------GKNVTLIHRSERILNKLF 177
Query: 283 DDRLRHYATTQLSKSGV--RLVRGIVKDVDSQKL-ILNDGTEVPYGLLVWSTGVGP-STL 338
D+ + +L K + RL + +++ + G +++ +TG+ P S L
Sbjct: 178 DEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSEL 237
Query: 339 VKSLDL 344
K L
Sbjct: 238 AKDSGL 243
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 76/311 (24%), Positives = 122/311 (39%), Gaps = 78/311 (25%)
Query: 62 KPRVVVLGSGWAGCRLMKGI---DTSLYD--VVCVSPR---NHMVFTPLLASTCVGTLEF 113
K ++V++G+G AG R ++ + LYD V PR N ++ + +LA
Sbjct: 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAG-------- 54
Query: 114 RSVAEPIARIQPAISREPGSYFFLSHCA-GIDTDNHVVHCETVTDELRTLEPWKFKISYD 172
AE I+ + E G + ID N VV + +SYD
Sbjct: 55 EKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDA-----------GRTVSYD 103
Query: 173 KLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLH 232
KL+IA G+ I G L V + I DV + + +++
Sbjct: 104 KLIIATGSYPFILPIPGSD-----LPGVFVYRTI----------DDVEAMLDCARNKK-K 147
Query: 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHV--TLIE------ANEILSSFDD 284
VV+GGG G+E + L D M +V V +H+ TL+E A +L
Sbjct: 148 AVVIGGGLLGLEAARGLKDLGM-EV-----TV---VHIAPTLMERQLDRTAGRLLR---- 194
Query: 285 RLRHYATTQLSKSGVRLVRG-----IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STL 338
+L G++++ IV + + + DGTE+P L+V + G+ P L
Sbjct: 195 -------RKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDEL 247
Query: 339 VKSLDLPKSPG 349
K L + G
Sbjct: 248 AKEAGLAVNRG 258
|
Length = 793 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATT 292
VVVGGG G+EF+ L+ VT++E + +L FD+ +
Sbjct: 3 VVVGGGYIGLEFASALAKLGS--------------KVTVVERRDRLLRGFDEEIAKILQE 48
Query: 293 QLSKSGVRL-----VRGIVKDVDSQKLILNDGTE 321
+L K+G+ + V I + D + L G
Sbjct: 49 KLEKNGIEVLLNTTVEEIEGNGDGVVVKLKTGDG 82
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 51/243 (20%), Positives = 84/243 (34%), Gaps = 63/243 (25%)
Query: 120 IARIQPAISREPGSYFFLSHCAGIDT--------DNHVVHCETVTDELRTLEPWKFKISY 171
+AR + G L G+D D H V E ++ T+
Sbjct: 86 LARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTV--EVTGEDKETIT-------A 136
Query: 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 231
D ++IA G+ G+ + + + L L ++P L
Sbjct: 137 DNIIIATGSRPRIPPGPGIDG-----ARILDSSDA-------LFLLELP-------KSL- 176
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYA 290
V+VGGG G+EF+ + + VT++E + IL D +
Sbjct: 177 --VIVGGGYIGLEFASVFAAL---GSK-----------VTVVERGDRILPGEDPEISKEL 220
Query: 291 TTQLSKSGVRL-----VRGIVKDVDSQKLILNDG--TEVPYGLLVWSTGVGPSTLVKSLD 343
T QL K GV++ V + K D + L DG + ++ + G P+T L
Sbjct: 221 TKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT--DGLG 278
Query: 344 LPK 346
L
Sbjct: 279 LEN 281
|
Length = 454 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 4e-06
Identities = 42/202 (20%), Positives = 68/202 (33%), Gaps = 63/202 (31%)
Query: 146 DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQE 205
D H V V E + + D ++IA G S I G E +E
Sbjct: 119 DAHTVE---VNGE---------RYTADHILIATGGRPSIPDIPG-AEYGITSDGFFALEE 165
Query: 206 IRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR----DVRQRY 261
+ +++ VVG G VEF+G ++ +
Sbjct: 166 LPKRV-----------------------AVVGAGYIAVEFAG-----VLNGLGSETHL-- 195
Query: 262 SHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVD-SQKLI 315
+ + L FD +R ++ K G+RL + + K+ D S L
Sbjct: 196 ----------FVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLT 245
Query: 316 LNDGTEVPYGLLVWSTGVGPST 337
L DG + L+W+ G P+T
Sbjct: 246 LEDGETLTVDCLIWAIGREPNT 267
|
Length = 450 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 36/178 (20%)
Query: 167 FKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEE 225
F +YDKL+IA GA I + EN L+ + ++ L +E
Sbjct: 100 FNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELL------------KDE 147
Query: 226 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SFD 283
E + V++G G G+E V K+ V +I+ + IL SFD
Sbjct: 148 EIKNI---VIIGAGFIGLEA-----------VEAAKHLGKN---VRIIQLEDRILPDSFD 190
Query: 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPST 337
+ +L ++GV L VK + + + ++ D E +++ +TGV P+T
Sbjct: 191 KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNT 248
|
Length = 444 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 47/201 (23%), Positives = 70/201 (34%), Gaps = 46/201 (22%)
Query: 143 IDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREVH 201
IDTD V TD RTL SYDKL++A G+ I G K+ R +
Sbjct: 80 IDTDQKQVI----TDAGRTL-------SYDKLILATGSYPFILPIPGADKKGVYVFRTIE 128
Query: 202 HAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261
I R V+GGG G+E + L + M
Sbjct: 129 DLDAIM-----------------AMAQRFKKAAVIGGGLLGLEAAVGLQNLGMD------ 165
Query: 262 SHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-----IVKDVDSQKLIL 316
V IH + L RL +L + G+ + IV + ++
Sbjct: 166 VSV---IHHAPGLMAKQLDQTAGRL---LQRELEQKGLTFLLEKDTVEIVGATKADRIRF 219
Query: 317 NDGTEVPYGLLVWSTGVGPST 337
DG+ + L+V + G+ P+
Sbjct: 220 KDGSSLEADLIVMAAGIRPND 240
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 21/113 (18%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI-EANEILSSFDDRLRHYA 290
++ GGG VEF+G I R + + TLI EIL FDD +R
Sbjct: 168 SILIAGGGYIAVEFAG-----IFRGLG---------VQTTLIYRGKEILRGFDDDMRRGL 213
Query: 291 TTQLSKSGVRLVRG-----IVKDVDSQ-KLILNDGTEVPYGLLVWSTGVGPST 337
L + G+R++ I KD D + K L+ E+ +++++TG P+T
Sbjct: 214 AAALEERGIRILPEDSITSISKDDDGRLKATLSKHEEIVADVVLFATGRSPNT 266
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 351 | |||
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 99.98 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 99.97 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 99.97 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 99.97 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 99.97 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 99.97 | |
| PRK06116 | 450 | glutathione reductase; Validated | 99.96 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.96 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.96 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 99.96 | |
| PLN02507 | 499 | glutathione reductase | 99.96 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 99.96 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 99.96 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 99.96 | |
| PLN02546 | 558 | glutathione reductase | 99.96 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 99.96 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 99.96 | |
| PRK06370 | 463 | mercuric reductase; Validated | 99.96 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 99.96 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 99.96 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.96 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 99.96 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 99.95 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 99.95 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 99.95 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 99.95 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 99.95 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 99.95 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 99.95 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 99.95 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 99.95 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.95 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 99.95 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 99.95 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 99.95 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 99.95 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.95 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 99.95 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 99.95 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 99.94 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 99.94 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 99.94 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.94 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 99.94 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 99.94 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 99.94 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 99.94 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.94 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 99.93 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 99.93 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.93 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 99.92 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.92 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 99.92 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 99.92 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.92 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.92 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.92 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.92 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 99.91 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.91 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.91 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.91 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.91 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.9 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.89 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.88 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.88 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.87 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 99.86 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.86 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.84 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 99.82 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.82 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.82 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.82 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.82 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.81 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.79 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 99.76 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.74 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.66 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.62 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 99.59 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.57 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.56 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 99.51 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.43 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.31 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.29 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.16 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.11 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 99.08 | |
| PLN02463 | 447 | lycopene beta cyclase | 99.05 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 98.98 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.97 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 98.95 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.95 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.91 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.9 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.87 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.87 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.87 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.86 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.85 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.85 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.85 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.83 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.83 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.81 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.8 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.8 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.79 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.79 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.78 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.78 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.75 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.75 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.75 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.74 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.74 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.73 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.73 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.73 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.72 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.72 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.72 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.71 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.7 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.69 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.67 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.65 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.64 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.64 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.63 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.62 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.62 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.61 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.61 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 98.6 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.59 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.59 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.58 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.58 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.57 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.56 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.56 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.56 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.55 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.55 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.54 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.54 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.54 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.53 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.53 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.53 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.51 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.51 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.5 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.49 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.49 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.49 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 98.48 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.48 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 98.48 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.48 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.47 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.47 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 98.47 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.46 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 98.46 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.46 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.45 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.45 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.45 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.44 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.44 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 98.43 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.43 | |
| PLN02985 | 514 | squalene monooxygenase | 98.42 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 98.42 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 98.42 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.42 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.42 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.42 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 98.41 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 98.41 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 98.38 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.38 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.38 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 98.37 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.37 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.35 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.35 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.34 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 98.33 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 98.32 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.32 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.31 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.31 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 98.3 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.3 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.29 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 98.28 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.27 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.27 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 98.27 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.27 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 98.25 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.25 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 98.24 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 98.24 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 98.23 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 98.23 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.22 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.22 | |
| PLN02507 | 499 | glutathione reductase | 98.22 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.21 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.21 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.2 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 98.2 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 98.2 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.19 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 98.16 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.16 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.15 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 98.14 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.14 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 98.13 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 98.13 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 98.1 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 98.1 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 98.1 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 98.1 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 98.1 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 98.09 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.09 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 98.08 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 98.08 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 98.07 | |
| PLN02268 | 435 | probable polyamine oxidase | 98.06 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 98.06 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 98.06 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 98.05 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 98.05 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 98.05 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 98.05 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.04 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 98.04 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 98.03 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 98.03 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.02 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.02 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 98.02 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 98.01 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 98.01 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 98.01 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 98.01 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 98.0 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 97.99 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.98 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.96 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 97.96 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 97.96 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 97.95 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.95 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 97.94 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 97.94 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 97.93 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.92 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 97.92 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.92 | |
| PLN02546 | 558 | glutathione reductase | 97.9 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 97.9 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 97.9 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 97.89 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 97.89 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 97.89 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.89 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 97.88 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 97.88 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 97.88 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 97.87 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 97.87 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.87 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 97.86 | |
| PLN02487 | 569 | zeta-carotene desaturase | 97.86 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.85 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 97.84 | |
| PLN02568 | 539 | polyamine oxidase | 97.84 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.84 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 97.83 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 97.82 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 97.82 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.82 | |
| PRK07121 | 492 | hypothetical protein; Validated | 97.81 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 97.81 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 97.81 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 97.8 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 97.79 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 97.79 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 97.75 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 97.75 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.74 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 97.74 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 97.71 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 97.7 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.7 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 97.69 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 97.68 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 97.68 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.67 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.67 | |
| PLN02676 | 487 | polyamine oxidase | 97.67 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 97.66 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 97.66 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.65 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.64 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 97.63 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.63 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.63 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.63 | |
| PLN02612 | 567 | phytoene desaturase | 97.61 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 97.6 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.6 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.6 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.6 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 97.59 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.59 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 97.58 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 97.58 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 97.58 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 97.57 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 97.57 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 97.56 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 97.56 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.56 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.56 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.56 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 97.56 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 97.55 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 97.55 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 97.55 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.55 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 97.54 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 97.53 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.52 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.52 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 97.51 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.5 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.5 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.49 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.49 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 97.48 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.47 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 97.47 | |
| PLN02815 | 594 | L-aspartate oxidase | 97.46 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 97.45 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.45 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.44 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 97.44 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 97.43 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 97.42 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 97.42 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 97.41 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 97.41 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 97.38 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.38 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 97.38 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.37 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 97.37 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.35 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.34 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 97.34 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 97.33 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 97.33 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.32 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 97.32 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.32 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.28 | |
| PLN03000 | 881 | amine oxidase | 97.28 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 97.28 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.27 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.27 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 97.27 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.26 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 97.26 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 97.25 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.25 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.25 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.24 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 97.23 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.23 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.23 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.21 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 97.21 | |
| PLN02976 | 1713 | amine oxidase | 97.2 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 97.17 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 97.17 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 97.17 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 97.16 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 97.14 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 97.14 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 97.11 | |
| PLN02785 | 587 | Protein HOTHEAD | 97.09 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 97.09 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 97.08 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 97.08 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 97.08 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.06 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 97.05 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.05 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 97.03 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.03 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 97.03 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 96.99 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 96.99 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.97 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.97 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 96.92 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 96.91 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 96.9 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 96.88 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 96.85 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 96.83 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.83 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 96.82 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 96.77 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 96.72 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 96.71 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 96.71 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 96.7 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 96.69 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 96.68 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 96.68 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.63 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 96.62 | |
| PLN02661 | 357 | Putative thiazole synthesis | 96.61 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.54 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 96.51 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 96.49 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 96.49 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 96.48 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 96.47 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 96.43 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 96.42 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 96.42 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 96.36 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 96.36 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 96.34 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 96.34 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.29 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 96.26 | |
| PLN02985 | 514 | squalene monooxygenase | 96.26 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.25 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 96.23 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 96.22 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 96.2 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 96.19 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.14 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.12 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 96.1 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 96.07 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 96.02 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 95.96 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 95.95 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.94 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.89 | |
| KOG0042 | 680 | consensus Glycerol-3-phosphate dehydrogenase [Ener | 95.88 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 95.88 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.87 | |
| KOG3855 | 481 | consensus Monooxygenase involved in coenzyme Q (ub | 95.85 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 95.83 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 95.79 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.77 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.68 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 95.63 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 95.46 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 95.43 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.41 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 95.35 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 95.34 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 95.3 | |
| PF13478 | 136 | XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2 | 95.22 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.98 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 94.94 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 94.91 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 94.9 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 94.9 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.85 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 94.84 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 94.83 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 94.82 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.71 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 94.7 |
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=300.75 Aligned_cols=288 Identities=52% Similarity=0.848 Sum_probs=263.6
Q ss_pred CCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 58 ~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
....+++|||+|+|++|.+.++.|...-++|+||+|++++.|+|+++..+.|..+..++.+++..+.... ..+++++.
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k--~~~~~y~e 128 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKK--NGEVKYLE 128 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhcc--CCCceEEe
Confidence 4456789999999999999999999999999999999999999999999999999999999998886533 33788999
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
+++..+|++.+.+++.....+. .++.+.+.||+||+|+|+.+..+++||..+++....+++++.+++.++..+++..
T Consensus 129 Aec~~iDp~~k~V~~~s~t~~~---~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a 205 (491)
T KOG2495|consen 129 AECTKIDPDNKKVHCRSLTADS---SDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKA 205 (491)
T ss_pred cccEeecccccEEEEeeeccCC---CcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999999999998765443 1456799999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCCCcHHHHHHHHHHhhh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSK 296 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~ 296 (351)
+.|+...+++++..+++|||||++|+|+|.+|.++...|+++.||+.++..+||+++..+ +|+.|+..+.+..++.+.+
T Consensus 206 ~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~ 285 (491)
T KOG2495|consen 206 ELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVR 285 (491)
T ss_pred hcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999986 8999999999999999999
Q ss_pred cCcEEEcCe-EEEEeCCeEEecCC----cEEeccEEEEecCCCCccccccCCCCCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQKLILNDG----TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG 350 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~~v~~~~g----~~~~~D~vi~a~G~~p~~~~~~~gl~~~~~G 350 (351)
.||.+..++ |+.++++.+..+.+ +++++.+++|+||..|.++.+.|--.+++.|
T Consensus 286 ~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~ 344 (491)
T KOG2495|consen 286 DGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQG 344 (491)
T ss_pred ccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccC
Confidence 999999995 99999988887654 5799999999999999988888766666655
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=294.55 Aligned_cols=272 Identities=36% Similarity=0.567 Sum_probs=238.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
++++|||||||++||.+|..|.+.. .+|++||+++++.|.|+++....|.........+++.. +....++.++.+
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~---~~~~~~v~~~~~ 78 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRAL---LRKSGNVQFVQG 78 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHH---hcccCceEEEEE
Confidence 3578999999999999999999864 89999999999999999999999999888777777666 333446999999
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
+|++||++.+.+.+.. +. .+.||.||+|+|+.+.++++||+.++++...+++++.++++++...|...+
T Consensus 79 ~V~~ID~~~k~V~~~~---~~--------~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~ 147 (405)
T COG1252 79 EVTDIDRDAKKVTLAD---LG--------EISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKAS 147 (405)
T ss_pred EEEEEcccCCEEEeCC---Cc--------cccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998843 34 899999999999999999999999999999999999999999987777776
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhc
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 297 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~ 297 (351)
.+..+ .....++|||||++|+|+|.+|.++..+.+.. |.....+.+|+++++. +++|.+++++.+..++.|++.
T Consensus 148 ~~~~~----~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~-~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~ 222 (405)
T COG1252 148 QEEDD----RALLTIVIVGGGPTGVELAGELAERLHRLLKK-FRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKL 222 (405)
T ss_pred ccccc----cceeEEEEECCChhHHHHHHHHHHHHHHHhhh-hcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHC
Confidence 43211 23457999999999999999999987655554 4443447899999998 599999999999999999999
Q ss_pred CcEEEcCe-EEEEeCCeEEecCCcE-EeccEEEEecCCCCccccccC-CCCCCCCCC
Q 018704 298 GVRLVRGI-VKDVDSQKLILNDGTE-VPYGLLVWSTGVGPSTLVKSL-DLPKSPGGR 351 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~v~~~~g~~-~~~D~vi~a~G~~p~~~~~~~-gl~~~~~G~ 351 (351)
||++++++ |+++++++|++++|.+ +++|.+|||+|.+++++++++ |++.|+.||
T Consensus 223 GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Gr 279 (405)
T COG1252 223 GVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGR 279 (405)
T ss_pred CCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCC
Confidence 99999996 9999999999999985 999999999999999999995 888888886
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=292.95 Aligned_cols=280 Identities=45% Similarity=0.790 Sum_probs=234.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
+.+++|||||||+||+.+|..|.+.+++|+|||+++++.|.|+++....+...+.....++... ....++.++.++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~----~~~~~~~~i~~~ 83 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPA----LAKLPNRYLRAV 83 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHH----hccCCeEEEEEE
Confidence 4557999999999999999999888899999999999999999888877766655444443333 233468899999
Q ss_pred eeeEeCCCCEEEEEee-------cCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHH
Q 018704 140 CAGIDTDNHVVHCETV-------TDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLL 212 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~-------~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (351)
|++||++.+.+.+... .++. ++.||+||||||+.|..+++||.+++.+..+++.++..+++.+..
T Consensus 84 V~~Id~~~~~v~~~~~~~~~~~~~~g~--------~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~ 155 (424)
T PTZ00318 84 VYDVDFEEKRVKCGVVSKSNNANVNTF--------SVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQ 155 (424)
T ss_pred EEEEEcCCCEEEEecccccccccCCce--------EecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999987321 1233 799999999999999999999998888889999999999888876
Q ss_pred hhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHH
Q 018704 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYAT 291 (351)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~ 291 (351)
++.....|....+..++.++++|||||.+|+|+|.+|..+..+...+.|+...++.+|+++++. ++++.+++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~ 235 (424)
T PTZ00318 156 CIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQ 235 (424)
T ss_pred HHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHH
Confidence 6555554444444455567999999999999999999987766666667776778999999997 578889999999999
Q ss_pred HHhhhcCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCccccccCCCCCCCCCC
Q 018704 292 TQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351 (351)
Q Consensus 292 ~~l~~~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~~~~~G~ 351 (351)
+.|++.||+++.+. |.++.++.+++++|+++++|.+|+++|.+|+++++.++++++++|+
T Consensus 236 ~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~ 296 (424)
T PTZ00318 236 RRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGR 296 (424)
T ss_pred HHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCc
Confidence 99999999999995 9999999999999999999999999999999999999988877663
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=260.61 Aligned_cols=249 Identities=19% Similarity=0.290 Sum_probs=194.9
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCccccch-hhhhhhcccccccccccchhccchhhhcCCCeEEE-EE
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LS 138 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 138 (351)
++|||||||+||++||..|++. +.+|+|||+++++.|.+ .++....+...... ..+......+....++.++ ..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~--~~~~~~~~~~~~~~~i~v~~~~ 79 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRK--YALAYTPEKFYDRKQITVKTYH 79 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHH--HcccCCHHHHHHhCCCEEEeCC
Confidence 4899999999999999999875 67899999999888774 33333322221110 1111111223344577765 47
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
+|+.||.+.+.+.+.+..+++ ...+.||+||||||+.|+.|++++ +.+++.+++.++..+.+.+..
T Consensus 80 ~V~~Id~~~~~v~~~~~~~~~------~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~------ 145 (438)
T PRK13512 80 EVIAINDERQTVTVLNRKTNE------QFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA------ 145 (438)
T ss_pred EEEEEECCCCEEEEEECCCCc------EEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHHHhh------
Confidence 999999999999886532222 235799999999999998887664 566777888888877776531
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhc
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 297 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~ 297 (351)
...++++|||||.+|+|+|..|.+++ .+|+++++. .+++.+++++.+.+.+.+++.
T Consensus 146 ---------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~ 202 (438)
T PRK13512 146 ---------NQVDKALVVGAGYISLEVLENLYERG--------------LHPTLIHRSDKINKLMDADMNQPILDELDKR 202 (438)
T ss_pred ---------cCCCEEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecccccchhcCHHHHHHHHHHHHhc
Confidence 12359999999999999999998877 899999997 467788999999999999999
Q ss_pred CcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
||+++.+. |+++++..+++.+|+++++|.|++|+|++|+ ++++..|++++++|
T Consensus 203 gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G 257 (438)
T PRK13512 203 EIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKG 257 (438)
T ss_pred CCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCC
Confidence 99999995 9999888899988989999999999999999 88998899888766
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=252.17 Aligned_cols=254 Identities=22% Similarity=0.387 Sum_probs=200.3
Q ss_pred cEEEECCchhHHHHHHhhhc---cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEe
Q 018704 64 RVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
+|||||||+||+.+|..|++ .+.+|+|||+++++.|.+.++....+......+..... .+....++.++.++|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~gv~~~~~~v 76 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLR----RLARQAGARFVIAEA 76 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHH----HHHHhcCCEEEEEEE
Confidence 59999999999999999964 46899999999999888877766555444333333322 223345788999999
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (351)
+.+|.+.+.+.+ .+++ ++.||+||||||+.|..|.+||..++++.+++..++..+.+.+...+.. .
T Consensus 77 ~~id~~~~~V~~---~~g~--------~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 142 (364)
T TIGR03169 77 TGIDPDRRKVLL---ANRP--------PLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADA--P- 142 (364)
T ss_pred EEEecccCEEEE---CCCC--------cccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhc--C-
Confidence 999999998776 3555 7999999999999999999999777888888888877755554322110 0
Q ss_pred CCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcE
Q 018704 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300 (351)
Q Consensus 221 ~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~ 300 (351)
...++++|||+|.+|+|+|..|.+... ......+|+++....+++.+++.+.+.+.+.+++.||+
T Consensus 143 -------~~~~~vvVvG~G~~g~E~A~~l~~~~~--------~~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~ 207 (364)
T TIGR03169 143 -------PGTKRLAVVGGGAAGVEIALALRRRLP--------KRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIE 207 (364)
T ss_pred -------CCCceEEEECCCHHHHHHHHHHHHHHH--------hcCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 123599999999999999999976431 10112589999555677778888999999999999999
Q ss_pred EEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCccccccCCCCCCCCC
Q 018704 301 LVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG 350 (351)
Q Consensus 301 ~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~~~~~G 350 (351)
++.+. +++++.+.+.+.+|.++++|.||+|+|.+|++++...+++++++|
T Consensus 208 v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g 258 (364)
T TIGR03169 208 VHEGAPVTRGPDGALILADGRTLPADAILWATGARAPPWLAESGLPLDEDG 258 (364)
T ss_pred EEeCCeeEEEcCCeEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCC
Confidence 99995 999988889999999999999999999999987877788877665
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=262.50 Aligned_cols=243 Identities=21% Similarity=0.386 Sum_probs=192.6
Q ss_pred CCcEEEECCchhHHHHHHhhhc----cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
+++|||||+|+||+.+|..|++ .+++|+||++++++.|.+.......+..... .+......+....++.++.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~----~l~~~~~~~~~~~gI~~~~ 78 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAE----ELSLVREGFYEKHGIKVLV 78 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHH----HccCCCHHHHHhCCCEEEc
Confidence 3589999999999999999975 3589999999999887653222222211111 1111122233445788776
Q ss_pred E-EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhh
Q 018704 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (351)
Q Consensus 138 ~-~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (351)
. .|+.+|.+.+.+.+ .++. .+.||+||||||+.|..|++||.+ ..++.++++.++..++..+
T Consensus 79 g~~V~~Id~~~~~V~~---~~G~--------~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~----- 142 (847)
T PRK14989 79 GERAITINRQEKVIHS---SAGR--------TVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACA----- 142 (847)
T ss_pred CCEEEEEeCCCcEEEE---CCCc--------EEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHH-----
Confidence 5 69999998887765 3455 899999999999999999999986 4567788899888887664
Q ss_pred ccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHHHH
Q 018704 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQ 293 (351)
Q Consensus 216 ~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~ 293 (351)
...++++|||||.+|+|+|..|.+++ .+|+++++.+ +++ .++++..+.+.+.
T Consensus 143 ------------~~~k~vvVIGgG~iGlE~A~~L~~~G--------------~~VtvVe~~~~ll~~~ld~~~~~~l~~~ 196 (847)
T PRK14989 143 ------------RRSKRGAVVGGGLLGLEAAGALKNLG--------------VETHVIEFAPMLMAEQLDQMGGEQLRRK 196 (847)
T ss_pred ------------hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEeccccchhhhcCHHHHHHHHHH
Confidence 33469999999999999999999887 8999999975 454 5889999999999
Q ss_pred hhhcCcEEEcCe-EEEEeCC------eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 294 LSKSGVRLVRGI-VKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 294 l~~~gV~~~~~~-v~~v~~~------~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
+++.||+++++. ++++..+ .+.+.||+++++|.||+|+|++|+ .+++..|++++++|
T Consensus 197 L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G 261 (847)
T PRK14989 197 IESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRG 261 (847)
T ss_pred HHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCC
Confidence 999999999995 8888542 467889999999999999999999 78888899888765
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=240.47 Aligned_cols=239 Identities=18% Similarity=0.312 Sum_probs=183.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCccccc-hhhhh-hhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLLAS-TCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
..+|||||||+||++||..|++.|. +|+|++++++++|. +.+.. ...+.. .... .+ ....+....++.++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~-~~~~--~~--~~~~~~~~~~i~~~~ 77 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDS-PQLQ--QV--LPANWWQENNVHLHS 77 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCC-cccc--cc--CCHHHHHHCCCEEEc
Confidence 3689999999999999999999876 69999999888774 33332 222211 1100 01 111222335777776
Q ss_pred E-EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhh
Q 018704 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (351)
Q Consensus 138 ~-~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (351)
. .|..+|.+.+.+.+ .++. .+.||+||||||+.|+.+++++.. ++++++++..++..+++.+
T Consensus 78 g~~V~~id~~~~~v~~---~~g~--------~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~----- 141 (396)
T PRK09754 78 GVTIKTLGRDTRELVL---TNGE--------SWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVL----- 141 (396)
T ss_pred CCEEEEEECCCCEEEE---CCCC--------EEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHh-----
Confidence 5 78999999888766 3555 899999999999999887766543 5677788888888887764
Q ss_pred ccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHHHH
Q 018704 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQ 293 (351)
Q Consensus 216 ~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~ 293 (351)
..+++++|||||.+|+|+|..|.+.+ .+|+++++.+ +++ .+++.+.+.+.+.
T Consensus 142 ------------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~ 195 (396)
T PRK09754 142 ------------QPERSVVIVGAGTIGLELAASATQRR--------------CKVTVIELAATVMGRNAPPPVQRYLLQR 195 (396)
T ss_pred ------------hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCcchhhhcCHHHHHHHHHH
Confidence 23469999999999999999998876 8999999974 554 3677888889999
Q ss_pred hhhcCcEEEcCe-EEEEeCC---eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 294 LSKSGVRLVRGI-VKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 294 l~~~gV~~~~~~-v~~v~~~---~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
+++.||+++.+. |++++.+ .+.+.+|+++++|.||+|+|.+|+ .|++.+|++.+
T Consensus 196 l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~ 254 (396)
T PRK09754 196 HQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDTA 254 (396)
T ss_pred HHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCcC
Confidence 999999999995 8888753 356788999999999999999999 67777777653
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=244.08 Aligned_cols=249 Identities=21% Similarity=0.308 Sum_probs=185.5
Q ss_pred cEEEECCchhHHHHHHhhhccC--ceEEEEcCCCccccchh-hhhhhcccccccccccchhccchhhhcCCCeEEE-EEE
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSH 139 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 139 (351)
+|||||||+||+++|..|++.+ .+|+|||+++.+.|.+. ++....+... .....+......+ ...++.++ ..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~gv~~~~~~~ 78 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFD--DPNTMIARTPEEF-IKSGIDVKTEHE 78 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccC--CHHHhhcCCHHHH-HHCCCeEEecCE
Confidence 7999999999999999999864 58999999998876542 2221111111 0011111122222 23467765 569
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
|+.++.+.+.+.+....++. ...+.||+||||||+.|..|++||.+ ++++++.++.++..+++.+..
T Consensus 79 V~~id~~~~~v~~~~~~~~~------~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~------ 146 (444)
T PRK09564 79 VVKVDAKNKTITVKNLKTGS------IFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKD------ 146 (444)
T ss_pred EEEEECCCCEEEEEECCCCC------EEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh------
Confidence 99999999999886433343 12344999999999999999999986 567777788777777765421
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHHHHhhh
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQLSK 296 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~l~~ 296 (351)
...++++|||||.+|+|+|..+.+.+ .+|+++++.+ +++ .+++++.+.+.+.+++
T Consensus 147 ---------~~~~~vvVvGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~ 203 (444)
T PRK09564 147 ---------EEIKNIVIIGAGFIGLEAVEAAKHLG--------------KNVRIIQLEDRILPDSFDKEITDVMEEELRE 203 (444)
T ss_pred ---------cCCCEEEEECCCHHHHHHHHHHHhcC--------------CcEEEEeCCcccCchhcCHHHHHHHHHHHHH
Confidence 23469999999999999999998776 8899999874 555 5789999999999999
Q ss_pred cCcEEEcCe-EEEEeCCe---EEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~~---v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.||+++.++ |.+++.+. ....++.++++|.||+|+|++|+ +++++.|++++++|
T Consensus 204 ~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g 262 (444)
T PRK09564 204 NGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNG 262 (444)
T ss_pred CCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcCccccCCC
Confidence 999999995 98886532 22234557999999999999999 89999999887666
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=238.56 Aligned_cols=238 Identities=21% Similarity=0.328 Sum_probs=184.4
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCcccc-chhhhhhhcccccccccccchhccchhhhcCCCeEEEE-E
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVF-TPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (351)
++|||||||+||+++|..|++. ..+|+||++++...| .+.+.....+......+ .......+....++.++. .
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~gv~~~~~~ 79 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDL---TRQSAGEFAEQFNLRLFPHT 79 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHh---hcCCHHHHHHhCCCEEECCC
Confidence 6899999999999999999874 567999999987766 35444433332221111 111122233445777764 6
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
+|+.+|.+.+.+.+ ++. .+.||+||||||+.|..|++||.+. ++.++++.++..+.+.+
T Consensus 80 ~V~~id~~~~~v~~----~~~--------~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~-------- 138 (377)
T PRK04965 80 WVTDIDAEAQVVKS----QGN--------QWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQL-------- 138 (377)
T ss_pred EEEEEECCCCEEEE----CCe--------EEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHh--------
Confidence 89999998887764 344 8999999999999999999999744 67777887877766654
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCC-CcHHHHHHHHHHhhh
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS-FDDRLRHYATTQLSK 296 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~-~~~~~~~~~~~~l~~ 296 (351)
...++++|||||++|+|+|..|.+.+ .+|+++++.+ +++. +++.+.+.+.+.+++
T Consensus 139 ---------~~~~~vvViGgG~~g~e~A~~L~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~ 195 (377)
T PRK04965 139 ---------RDAQRVLVVGGGLIGTELAMDLCRAG--------------KAVTLVDNAASLLASLMPPEVSSRLQHRLTE 195 (377)
T ss_pred ---------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecCCcccchhCCHHHHHHHHHHHHh
Confidence 23469999999999999999998766 8999999974 4444 578888899999999
Q ss_pred cCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
.||+++.+. |++++.+ .+.+.+|+++++|.||+|+|.+|+ .+++.+|++.+
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~ 252 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVN 252 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcC
Confidence 999999984 9888753 467788999999999999999999 78888888764
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-30 Score=238.86 Aligned_cols=243 Identities=23% Similarity=0.310 Sum_probs=177.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc----------hhhhhhh-----------ccc------ccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT----------PLLASTC-----------VGT------LEF 113 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~----------~~~~~~~-----------~~~------~~~ 113 (351)
.++|+||||+||+|..||.++++.|.+|.|+|+...+... .++.... .|. .++
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 4699999999999999999999999999999998532111 0000000 000 011
Q ss_pred cccc-------cchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 114 RSVA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 114 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..+. .........+....++.++.+...-++ .+++.+... +.+ ++.++++|||||++|+.|+
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~-~~~--------~~~a~~iiIATGS~p~~~~ 151 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGE-DKE--------TITADNIIIATGSRPRIPP 151 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CCEEEEcCC-Cce--------EEEeCEEEEcCCCCCcCCC
Confidence 1111 111112223344456777777666555 677776432 223 9999999999999999999
Q ss_pred CCCcccc-ccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 187 IHGVKEN-ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 187 i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
++++++. .+..++. +.+..+|. +++|||||.+|+|+|..+.++|
T Consensus 152 ~~~~~~~~~~~s~~~-------------l~~~~lP~----------~lvIiGgG~IGlE~a~~~~~LG------------ 196 (454)
T COG1249 152 GPGIDGARILDSSDA-------------LFLLELPK----------SLVIVGGGYIGLEFASVFAALG------------ 196 (454)
T ss_pred CCCCCCCeEEechhh-------------cccccCCC----------EEEEECCCHHHHHHHHHHHHcC------------
Confidence 9998643 2333222 12225664 9999999999999999999998
Q ss_pred CccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCCc--EEeccEEEEecCCCCc-
Q 018704 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGT--EVPYGLLVWSTGVGPS- 336 (351)
Q Consensus 266 ~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g~--~~~~D~vi~a~G~~p~- 336 (351)
.+||++++. .++|.+|+++.+.+.+.|++.|++++++. ++.++.+ .+.+++|. ++++|.|++|+|++||
T Consensus 197 --~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 197 --SKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred --CcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 999999997 68999999999999999999999999995 8888653 36667776 6899999999999999
Q ss_pred c--ccccCCCCCCCCCC
Q 018704 337 T--LVKSLDLPKSPGGR 351 (351)
Q Consensus 337 ~--~~~~~gl~~~~~G~ 351 (351)
+ -+++.|+++|++|.
T Consensus 275 ~~LgLe~~Gv~~~~rg~ 291 (454)
T COG1249 275 DGLGLENAGVELDDRGF 291 (454)
T ss_pred CCCChhhcCceECCCCC
Confidence 4 46778899988763
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=254.38 Aligned_cols=237 Identities=21% Similarity=0.380 Sum_probs=189.2
Q ss_pred EEEECCchhHHHHHHhhhc---cCceEEEEcCCCccccch-hhhhhhcccccccccccchhccchhhhcCCCeEEEEE-E
Q 018704 65 VVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (351)
Q Consensus 65 VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (351)
|||||+|+||+++|..|++ .+++|+|||+++++.|.+ .++....+......+.....+ +....++.++.. +
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~----~~~~~gv~~~~g~~ 76 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKD----WYEKHGITLYTGET 76 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHH----HHHHCCCEEEcCCe
Confidence 6999999999999999876 357999999999987763 344444333333322222222 223357887764 8
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
|+.||++.+.+.+ .++. .+.||+||||||+.|+.|++||.+ ++++.++++.++..+++.+
T Consensus 77 V~~Id~~~k~V~~---~~g~--------~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~-------- 137 (785)
T TIGR02374 77 VIQIDTDQKQVIT---DAGR--------TLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMA-------- 137 (785)
T ss_pred EEEEECCCCEEEE---CCCc--------EeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHh--------
Confidence 9999999888766 3555 899999999999999999999986 4677788888888877754
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHHHHhhh
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQLSK 296 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~l~~ 296 (351)
...++++|||||.+|+|+|..|.+++ .+|+++++.+ +++ .+++.+.+.+.+.+++
T Consensus 138 ---------~~~k~vvVVGgG~~GlE~A~~L~~~G--------------~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~ 194 (785)
T TIGR02374 138 ---------QRFKKAAVIGGGLLGLEAAVGLQNLG--------------MDVSVIHHAPGLMAKQLDQTAGRLLQRELEQ 194 (785)
T ss_pred ---------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEccCCchhhhhcCHHHHHHHHHHHHH
Confidence 34469999999999999999999877 8999999874 443 4788889999999999
Q ss_pred cCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
.||+++++. ++++.++ +|.+.||+++++|.||+|+|++|+ .+++.+|++++
T Consensus 195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~ 251 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN 251 (785)
T ss_pred cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC
Confidence 999999995 8888653 578899999999999999999999 78888888765
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-29 Score=236.91 Aligned_cols=236 Identities=21% Similarity=0.315 Sum_probs=168.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc-------h--------hhhhh------hccc------cccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P--------LLAST------CVGT------LEFR 114 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~-------~--------~~~~~------~~~~------~~~~ 114 (351)
.+||+||||||||++||..|++.|++|+|||+.. +... | .+... ..+. ..+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~-~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR-LGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc-hhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 5899999999999999999999999999999862 2110 0 00000 0000 0000
Q ss_pred ccccc-------hhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 115 SVAEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 115 ~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
.+... +...........++.++.+.+..++. +.+.+ ++. .+.||+||||||+.|+.|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~~v~~----~g~--------~~~~d~lViATGs~p~~p~i 148 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--HTVEV----NGE--------RYTADHILIATGGRPSIPDI 148 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE----CCE--------EEEeCEEEEecCCCCCCCCC
Confidence 00000 01111112334578888888877763 55554 344 79999999999999999999
Q ss_pred CCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 018704 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (351)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~ 267 (351)
||.+ .+++..++. ..... .++++|||+|.+|+|+|..|.+++
T Consensus 149 ~g~~-~~~~~~~~~-------------~~~~~----------~~~vvViGgG~~g~E~A~~l~~~g-------------- 190 (450)
T PRK06116 149 PGAE-YGITSDGFF-------------ALEEL----------PKRVAVVGAGYIAVEFAGVLNGLG-------------- 190 (450)
T ss_pred CCcc-eeEchhHhh-------------Ccccc----------CCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 9873 333222111 11112 249999999999999999998877
Q ss_pred cEEEEEeCCC-CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEEEEecCCCCc-cc-
Q 018704 268 IHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPS-TL- 338 (351)
Q Consensus 268 ~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p~-~~- 338 (351)
.+|+++++.+ +++.+++++.+.+.+.+++.||+++.+. |++++. + .+.+.+|+++++|.||+|+|++|+ ++
T Consensus 191 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l 270 (450)
T PRK06116 191 SETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGL 270 (450)
T ss_pred CeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCC
Confidence 8999999974 6788899999999999999999999995 988863 2 356678888999999999999999 53
Q ss_pred -cccCCCCCCCCC
Q 018704 339 -VKSLDLPKSPGG 350 (351)
Q Consensus 339 -~~~~gl~~~~~G 350 (351)
++.+|++++++|
T Consensus 271 ~l~~~g~~~~~~G 283 (450)
T PRK06116 271 GLENAGVKLNEKG 283 (450)
T ss_pred CchhcCceECCCC
Confidence 566778777666
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-29 Score=235.78 Aligned_cols=242 Identities=19% Similarity=0.277 Sum_probs=168.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhc----------ccccccccc-------cchh-cc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV----------GTLEFRSVA-------EPIA-RI 123 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~----------~~~~~~~~~-------~~~~-~~ 123 (351)
.+||+||||||||++||.+|++.|.+|+|||+.+......+....|. ....+.... ..++ ..
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN 82 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence 48999999999999999999999999999998753211111111110 000110000 0010 01
Q ss_pred chhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccc--cccccCCHH
Q 018704 124 QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE--NATFLREVH 201 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~--~~~~~~~~~ 201 (351)
...+....++.++.+++..++.. .+.+.. .++. ..+.||+||||||+.|..|++||+++ .+++. .
T Consensus 83 ~~~~~~~~gv~~~~g~~~~i~~~--~~~v~~-~~g~-------~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~---~ 149 (441)
T PRK08010 83 FHNLADMPNIDVIDGQAEFINNH--SLRVHR-PEGN-------LEIHGEKIFINTGAQTVVPPIPGITTTPGVYDS---T 149 (441)
T ss_pred HHHHhhcCCcEEEEEEEEEecCC--EEEEEe-CCCe-------EEEEeCEEEEcCCCcCCCCCCCCccCCCCEECh---h
Confidence 12233445788888888888754 444433 2331 26899999999999999999999742 22222 1
Q ss_pred HHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC
Q 018704 202 HAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS 280 (351)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~ 280 (351)
+ +.. +.. ..++++|||+|.+|+|+|..|.+++ .+|++++++ .+++
T Consensus 150 ~---~~~-------~~~----------~~~~v~ViGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~ 195 (441)
T PRK08010 150 G---LLN-------LKE----------LPGHLGILGGGYIGVEFASMFANFG--------------SKVTILEAASLFLP 195 (441)
T ss_pred H---hhc-------ccc----------cCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCC
Confidence 1 111 111 2249999999999999999999877 899999997 4778
Q ss_pred CCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeEEec-CCcEEeccEEEEecCCCCc-cc--cccCCCCCCCCC
Q 018704 281 SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLILN-DGTEVPYGLLVWSTGVGPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 281 ~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v~~~-~g~~~~~D~vi~a~G~~p~-~~--~~~~gl~~~~~G 350 (351)
.+++++.+.+.+.+++.||+++.+. |++++. +.+.+. ++.++++|.|++|+|.+|+ ++ ++.+|++++++|
T Consensus 196 ~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G 272 (441)
T PRK08010 196 REDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERG 272 (441)
T ss_pred CcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCC
Confidence 8889999999999999999999994 988864 344432 2336899999999999999 44 456778877666
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=234.87 Aligned_cols=241 Identities=19% Similarity=0.327 Sum_probs=165.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc-ccchhhhhhhcc----------cccccccccc-------hhcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM-VFTPLLASTCVG----------TLEFRSVAEP-------IARI 123 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~-------~~~~ 123 (351)
.+||+||||||||++||..|++.|.+|+|||+++.. ... ++...|.- ...+..+... +...
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~-c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGT-CINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGK 81 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCccccee-eecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999997642 111 00000100 0011111110 1111
Q ss_pred chhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccc--cccccCCHH
Q 018704 124 QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE--NATFLREVH 201 (351)
Q Consensus 124 ~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~--~~~~~~~~~ 201 (351)
........++.++...+..+ +.+.+.+....+. ..+.||+||||||+.|+.|++||.++ .+++. .
T Consensus 82 ~~~~~~~~gV~~~~g~~~~~--~~~~v~v~~~~~~--------~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~---~ 148 (438)
T PRK07251 82 NYAMLAGSGVDLYDAEAHFV--SNKVIEVQAGDEK--------IELTAETIVINTGAVSNVLPIPGLADSKHVYDS---T 148 (438)
T ss_pred HHHHHHhCCCEEEEEEEEEc--cCCEEEEeeCCCc--------EEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEch---H
Confidence 11223345788887776544 4566766431112 27999999999999999999999742 23322 1
Q ss_pred HHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC
Q 018704 202 HAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS 280 (351)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~ 280 (351)
++..+ .. ..++++|||||++|+|+|..+.+++ .+|+++++. .+++
T Consensus 149 ~~~~~----------~~----------~~~~vvIIGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~ 194 (438)
T PRK07251 149 GIQSL----------ET----------LPERLGIIGGGNIGLEFAGLYNKLG--------------SKVTVLDAASTILP 194 (438)
T ss_pred HHhcc----------hh----------cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCccCC
Confidence 22111 11 2249999999999999999998876 899999997 4777
Q ss_pred CCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC--eEE-ecCCcEEeccEEEEecCCCCc-cc--cccCCCCCCCCC
Q 018704 281 SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--KLI-LNDGTEVPYGLLVWSTGVGPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 281 ~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~--~v~-~~~g~~~~~D~vi~a~G~~p~-~~--~~~~gl~~~~~G 350 (351)
..++++.+.+.+.+++.||+++.+. |++++.+ ++. ..+|+++++|.||+|+|++|+ +. ++..+++.+++|
T Consensus 195 ~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g 271 (438)
T PRK07251 195 REEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERG 271 (438)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCC
Confidence 7888999999999999999999994 8888643 343 346778999999999999999 43 333455555544
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=235.14 Aligned_cols=236 Identities=19% Similarity=0.252 Sum_probs=165.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc----hhhh------hh----------hcccc-------ccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT----PLLA------ST----------CVGTL-------EFR 114 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~----~~~~------~~----------~~~~~-------~~~ 114 (351)
++||+||||||+|++||..|++.|.+|+|||+.. +... .+.+ .. ..|.. .+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 4899999999999999999999999999999853 1111 0000 00 00000 000
Q ss_pred cccc-------chhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC-C
Q 018704 115 SVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF-G 186 (351)
Q Consensus 115 ~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p-~ 186 (351)
.+.. .+...........++.++.+..... +.+.+.+ ++. .+.||+||||||+.|+.| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~--~~~~v~v----~~~--------~~~~d~vIiAtGs~p~~p~~ 146 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFT--KDGTVEV----NGR--------DYTAPHILIATGGKPSFPEN 146 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEE----CCE--------EEEeCEEEEecCCCCCCCCC
Confidence 0000 1111112223344677777665433 3455544 333 799999999999999999 8
Q ss_pred CCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 018704 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (351)
Q Consensus 187 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~ 266 (351)
+||.+ ...+. ++.. .+...| ++++|||||++|+|+|..|.+++
T Consensus 147 i~g~~-~~~~~---~~~~----------~~~~~~----------~~vvIIGgG~iG~E~A~~l~~~g------------- 189 (450)
T TIGR01421 147 IPGAE-LGTDS---DGFF----------ALEELP----------KRVVIVGAGYIAVELAGVLHGLG------------- 189 (450)
T ss_pred CCCCc-eeEcH---HHhh----------CccccC----------CeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 99863 22211 1111 111223 49999999999999999999887
Q ss_pred ccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC-----eEEecCC-cEEeccEEEEecCCCCc-c
Q 018704 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILNDG-TEVPYGLLVWSTGVGPS-T 337 (351)
Q Consensus 267 ~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~-----~v~~~~g-~~~~~D~vi~a~G~~p~-~ 337 (351)
.+|+++++. ++++.+++++.+.+.+.+++.||+++.+. |++++.+ .+.+.+| .++++|.||+|+|++|+ +
T Consensus 190 -~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 190 -SETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred -CcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 899999997 57888999999999999999999999994 8888642 3566677 56999999999999999 5
Q ss_pred c--cccCCCCCCCCC
Q 018704 338 L--VKSLDLPKSPGG 350 (351)
Q Consensus 338 ~--~~~~gl~~~~~G 350 (351)
+ ++.+|++++++|
T Consensus 269 ~l~l~~~g~~~~~~G 283 (450)
T TIGR01421 269 GLGLENVGIKLNEKG 283 (450)
T ss_pred cCCccccCcEECCCC
Confidence 4 577788887766
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=236.80 Aligned_cols=244 Identities=19% Similarity=0.248 Sum_probs=171.7
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCC---------Cccccch----hhh------hhh----------ccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR---------NHMVFTP----LLA------STC----------VGT 110 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~---------~~~~~~~----~~~------~~~----------~~~ 110 (351)
..++||+||||||+|++||.++++.|.+|+|||+. ..+.... +.+ ... .|.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 34689999999999999999999999999999962 2221110 000 000 001
Q ss_pred c-------cccccccc-------hhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEE
Q 018704 111 L-------EFRSVAEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176 (351)
Q Consensus 111 ~-------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lvi 176 (351)
. .+..+... +......+....++.++.+++..++.....+.. .+++ ...+.||+|||
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~---~~g~------~~~~~~d~LII 173 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQ---LDGT------KLRYTAKHILI 173 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEe---CCCc------EEEEEcCEEEE
Confidence 0 00000000 011111233446788999998888766444432 2333 12689999999
Q ss_pred ecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHH
Q 018704 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (351)
Q Consensus 177 AtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~ 256 (351)
|||+.|..|++||.+ ... +..++..+. ...++++|||||.+|+|+|..+..++
T Consensus 174 ATGs~p~~p~ipG~~-~~~---~~~~~~~l~--------------------~~~k~vvVIGgG~ig~E~A~~l~~~G--- 226 (499)
T PLN02507 174 ATGSRAQRPNIPGKE-LAI---TSDEALSLE--------------------ELPKRAVVLGGGYIAVEFASIWRGMG--- 226 (499)
T ss_pred ecCCCCCCCCCCCcc-cee---chHHhhhhh--------------------hcCCeEEEECCcHHHHHHHHHHHHcC---
Confidence 999999999999863 222 222222211 11249999999999999999998877
Q ss_pred HHhhhcCCCCccEEEEEeCCC-CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecCCcEEeccEEEEe
Q 018704 257 VRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWS 330 (351)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~g~~~~~D~vi~a 330 (351)
.+|+++++.+ +++.+++++.+.+.+.+++.||+++.+. |++++. ++ +.+.+|+++++|.|++|
T Consensus 227 -----------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a 295 (499)
T PLN02507 227 -----------ATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFA 295 (499)
T ss_pred -----------CeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEe
Confidence 8999999974 7788999999999999999999999994 888864 33 55567888999999999
Q ss_pred cCCCCc-cc--cccCCCCCCCCC
Q 018704 331 TGVGPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 331 ~G~~p~-~~--~~~~gl~~~~~G 350 (351)
+|++|+ .+ ++.+|++++++|
T Consensus 296 ~G~~pn~~~l~l~~~gl~~~~~G 318 (499)
T PLN02507 296 TGRAPNTKRLNLEAVGVELDKAG 318 (499)
T ss_pred ecCCCCCCCCCchhhCcEECCCC
Confidence 999999 54 567788877766
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-29 Score=235.76 Aligned_cols=238 Identities=19% Similarity=0.305 Sum_probs=169.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----hhhh-----------hh-----ccc------ccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLAS-----------TC-----VGT------LEFRS 115 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----~~~~-----------~~-----~~~------~~~~~ 115 (351)
++||+||||||||++||..+++.|.+|+|+|+.. +...- +.+. .. .+. ..+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 4899999999999999999999999999999842 21110 0000 00 000 00000
Q ss_pred c-------ccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCC
Q 018704 116 V-------AEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (351)
Q Consensus 116 ~-------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~ 188 (351)
+ ...+...........++.++.+++..++.. .+.+. .++. .+.||+||||||+.|..|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~--~v~v~--~~g~--------~~~~d~lIiATGs~p~~p~i~ 148 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPN--TVEVL--QDGT--------TYTAKKILIAVGGRPQKPNLP 148 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEe--cCCe--------EEEcCEEEEecCCcCCCCCCC
Confidence 0 011112222234456788888888888764 44432 2344 799999999999999999999
Q ss_pred CccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 018704 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (351)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~ 268 (351)
|.+ ...+. .+... +.. ..++++|||+|.+|+|+|..+.+++ .
T Consensus 149 G~~-~~~~~---~~~~~----------l~~----------~~~~vvVIGgG~~g~E~A~~l~~~G--------------~ 190 (446)
T TIGR01424 149 GHE-LGITS---NEAFH----------LPT----------LPKSILILGGGYIAVEFAGIWRGLG--------------V 190 (446)
T ss_pred Ccc-ceech---HHhhc----------ccc----------cCCeEEEECCcHHHHHHHHHHHHcC--------------C
Confidence 863 22221 12111 111 2349999999999999999998877 8
Q ss_pred EEEEEeCCC-CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc-cc--c
Q 018704 269 HVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS-TL--V 339 (351)
Q Consensus 269 ~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~-~~--~ 339 (351)
+|+++++.+ +++.+++++.+.+.+.+++.||+++.+. |.+++. + .+.+.+|+++++|.||+|+|++|+ +. +
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l 270 (446)
T TIGR01424 191 QVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGL 270 (446)
T ss_pred eEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCc
Confidence 999999974 6788899999999999999999999994 888863 2 355667888999999999999999 43 5
Q ss_pred ccCCCCCCCCC
Q 018704 340 KSLDLPKSPGG 350 (351)
Q Consensus 340 ~~~gl~~~~~G 350 (351)
+.+|++++++|
T Consensus 271 ~~~g~~~~~~G 281 (446)
T TIGR01424 271 EAAGVELNDAG 281 (446)
T ss_pred cccCeEECCCC
Confidence 67788777665
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=219.31 Aligned_cols=239 Identities=18% Similarity=0.218 Sum_probs=170.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCce-EEEEcCCCccccchhhhhhhcccccccc--cccchhccchhhhcCCCeEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTPLLASTCVGTLEFRS--VAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
+.+||+|||||||||+||.+++|.+++ ++|+|......+..... ..-+.+.+.. ....+...........++.+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~-~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~ 80 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT-DVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE 80 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce-eecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE
Confidence 458999999999999999999999999 77777653321111111 1112222221 2334444555556677888888
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
..|..++.....+.+.+ +++ ++.++.||||||..++.|.+||..+ +.-+.+..+..+.+ +
T Consensus 81 ~~v~~v~~~~~~F~v~t-~~~---------~~~ak~vIiAtG~~~~~~~~~~e~e--~~g~gv~yc~~cdg-~------- 140 (305)
T COG0492 81 DEVEKVELEGGPFKVKT-DKG---------TYEAKAVIIATGAGARKLGVPGEEE--FEGKGVSYCATCDG-F------- 140 (305)
T ss_pred EEEEEEeecCceEEEEE-CCC---------eEEEeEEEECcCCcccCCCCCcchh--hcCCceEEeeecCc-c-------
Confidence 99999998875666643 233 6999999999999999999987542 11112222222222 1
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhc
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS 297 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~ 297 (351)
.+.|+|+|||||++|+|.|..|.+++ .+|++++|++.++. .+.+.+.+++.
T Consensus 141 ----------~~~k~v~ViGgG~sAve~Al~L~~~a--------------~~Vtlv~r~~~~ra-----~~~~~~~l~~~ 191 (305)
T COG0492 141 ----------FKGKDVVVIGGGDSAVEEALYLSKIA--------------KKVTLVHRRDEFRA-----EEILVERLKKN 191 (305)
T ss_pred ----------ccCCeEEEEcCCHHHHHHHHHHHHhc--------------CeEEEEecCcccCc-----CHHHHHHHHhc
Confidence 23459999999999999999999998 88999999876653 33444555555
Q ss_pred -CcEEEcC-eEEEEeC---CeEEecCCc----EEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 298 -GVRLVRG-IVKDVDS---QKLILNDGT----EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 298 -gV~~~~~-~v~~v~~---~~v~~~~g~----~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
+|+++++ .++++.+ .+|.+++.+ .+++|.|++++|..|+ .|++.+++ ++++|
T Consensus 192 ~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~-~~~~g 253 (305)
T COG0492 192 VKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV-LDENG 253 (305)
T ss_pred CCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccc-cCCCC
Confidence 8999999 4999988 477887642 6889999999999999 88888776 66665
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=232.85 Aligned_cols=244 Identities=18% Similarity=0.196 Sum_probs=169.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----hhhhh--------hc---ccccc--------cccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLAST--------CV---GTLEF--------RSVA 117 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----~~~~~--------~~---~~~~~--------~~~~ 117 (351)
..+||+||||||+|++||++|++.|.+|+|||+++.+.... ..+.- .. ....+ .++.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 45899999999999999999999999999999865432110 00000 00 00000 0000
Q ss_pred c---c-------hhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 118 E---P-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 118 ~---~-------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
. . ..+.........++.++.+++..++.. .+.+.. .++. ...+.||+||||||+.|+.|++
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~-~~g~------~~~~~~d~lviATGs~p~~p~~ 154 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPH--TVEVEC-PDGE------VETLTADKIVIATGSRPYRPPD 154 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCC--EEEEEe-CCCc------eEEEEcCEEEEcCCCCCCCCCC
Confidence 0 0 001111223345788888888777654 454433 2232 1379999999999999999887
Q ss_pred CCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 018704 188 HGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (351)
Q Consensus 188 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~ 266 (351)
++.+ +.+++. ..+... . ...++++|||||.+|+|+|..+.+++
T Consensus 155 ~~~~~~~v~~~------~~~~~~-------~----------~~~~~v~IiGgG~~g~E~A~~l~~~g------------- 198 (461)
T PRK05249 155 VDFDHPRIYDS------DSILSL-------D----------HLPRSLIIYGAGVIGCEYASIFAALG------------- 198 (461)
T ss_pred CCCCCCeEEcH------HHhhch-------h----------hcCCeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 7754 222222 222111 1 12359999999999999999999887
Q ss_pred ccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecCCcEEeccEEEEecCCCCc-cc-
Q 018704 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS-TL- 338 (351)
Q Consensus 267 ~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~g~~~~~D~vi~a~G~~p~-~~- 338 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++. ++ +.+.+|+++++|.||+|+|++|+ ++
T Consensus 199 -~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l 277 (461)
T PRK05249 199 -VKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGL 277 (461)
T ss_pred -CeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCC
Confidence 899999997 57888999999999999999999999994 888863 33 44567888999999999999999 53
Q ss_pred -cccCCCCCCCCC
Q 018704 339 -VKSLDLPKSPGG 350 (351)
Q Consensus 339 -~~~~gl~~~~~G 350 (351)
++.+|++++++|
T Consensus 278 ~l~~~g~~~~~~G 290 (461)
T PRK05249 278 NLENAGLEADSRG 290 (461)
T ss_pred CchhhCcEecCCC
Confidence 567788777665
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=232.87 Aligned_cols=239 Identities=18% Similarity=0.281 Sum_probs=167.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCC---------Cccc---------------cchhhhhh-----hccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR---------NHMV---------------FTPLLAST-----CVGT 110 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~---------~~~~---------------~~~~~~~~-----~~~~ 110 (351)
..++||+||||||+|+.||..+++.|.+|+|+|+. ..+. +...+... ..|.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 34589999999999999999999999999999951 1110 00000000 0010
Q ss_pred -------cccccc-------ccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEE
Q 018704 111 -------LEFRSV-------AEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176 (351)
Q Consensus 111 -------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lvi 176 (351)
+++..+ ...+...........++.++.++++.++.. .+.+ +++ .+.||+|||
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~--~V~v----~G~--------~~~~D~LVI 222 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH--TVDV----DGK--------LYTARNILI 222 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC--EEEE----CCE--------EEECCEEEE
Confidence 011111 011112222333456788998888888763 4543 344 799999999
Q ss_pred ecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHH
Q 018704 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (351)
Q Consensus 177 AtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~ 256 (351)
|||+.|..|++||.+ .+++ ..++..+ . ...++++|||||.+|+|+|..|..++
T Consensus 223 ATGs~p~~P~IpG~~-~v~~---~~~~l~~----------~----------~~~k~V~VIGgG~iGvE~A~~L~~~g--- 275 (558)
T PLN02546 223 AVGGRPFIPDIPGIE-HAID---SDAALDL----------P----------SKPEKIAIVGGGYIALEFAGIFNGLK--- 275 (558)
T ss_pred eCCCCCCCCCCCChh-hccC---HHHHHhc----------c----------ccCCeEEEECCCHHHHHHHHHHHhcC---
Confidence 999999999999973 2222 2221111 1 12359999999999999999998877
Q ss_pred HHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---CeEE--ecCCcEEeccEEEE
Q 018704 257 VRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---QKLI--LNDGTEVPYGLLVW 329 (351)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~~v~--~~~g~~~~~D~vi~ 329 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++++. +.++.. +.+. +.+++...+|.||+
T Consensus 276 -----------~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viv 344 (558)
T PLN02546 276 -----------SDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMF 344 (558)
T ss_pred -----------CeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEE
Confidence 899999987 47888999999999999999999999995 888853 3333 34444455899999
Q ss_pred ecCCCCc-cc--cccCCCCCCCCC
Q 018704 330 STGVGPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 330 a~G~~p~-~~--~~~~gl~~~~~G 350 (351)
|+|++|+ ++ ++++|++++++|
T Consensus 345 a~G~~Pnt~~L~le~~gl~~d~~G 368 (558)
T PLN02546 345 ATGRKPNTKNLGLEEVGVKMDKNG 368 (558)
T ss_pred eeccccCCCcCChhhcCCcCCCCC
Confidence 9999999 54 578888888776
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-28 Score=233.09 Aligned_cols=242 Identities=19% Similarity=0.252 Sum_probs=165.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC----c----cccc-------h---hhhh-----------hhccc--
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN----H----MVFT-------P---LLAS-----------TCVGT-- 110 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~----~----~~~~-------~---~~~~-----------~~~~~-- 110 (351)
.+||+||||||||++||.+|++.|.+|+|||+.. . +... | ++.. ...|.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 4899999999999999999999999999999621 1 1110 1 0000 00011
Q ss_pred ---ccccccccchhccch-------hhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC
Q 018704 111 ---LEFRSVAEPIARIQP-------AISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (351)
Q Consensus 111 ---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 180 (351)
..+..+......... ......++.++.+.+... +.+.+.+.....+. .+.||+||||||+
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~--~~~~v~v~~~~~~~--------~i~~d~lIIATGs 154 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLK--DEHTVSYGDNSQEE--------TITAKYILIATGG 154 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEc--cCCEEEEeeCCCce--------EEECCEEEEecCC
Confidence 011111111111110 111223566666655543 44566654211222 7999999999999
Q ss_pred CcCCC-CCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHh
Q 018704 181 EASTF-GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (351)
Q Consensus 181 ~p~~p-~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~ 259 (351)
.|+.| .+||.++..++. .+... ....| ++++|||||++|+|+|..|.+++
T Consensus 155 ~p~~p~~i~G~~~~~~~~---~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~l~~~G------ 205 (499)
T PTZ00052 155 RPSIPEDVPGAKEYSITS---DDIFS----------LSKDP----------GKTLIVGASYIGLETAGFLNELG------ 205 (499)
T ss_pred CCCCCCCCCCccceeecH---HHHhh----------hhcCC----------CeEEEECCCHHHHHHHHHHHHcC------
Confidence 99988 489875433222 22211 11122 49999999999999999999887
Q ss_pred hhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCC
Q 018704 260 RYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 260 ~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
.+|+++++..+++.+++++.+.+.+.|++.||+++.+. +.+++. + .+.+.+|+++++|.|++|+|++
T Consensus 206 --------~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 206 --------FDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred --------CcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCC
Confidence 89999998777788999999999999999999999994 777753 2 4566788889999999999999
Q ss_pred Cc-ccc--ccCCCCCCCCC
Q 018704 335 PS-TLV--KSLDLPKSPGG 350 (351)
Q Consensus 335 p~-~~~--~~~gl~~~~~G 350 (351)
|+ +++ +.+|++++++|
T Consensus 278 pn~~~l~l~~~g~~~~~~G 296 (499)
T PTZ00052 278 PDIKGLNLNAIGVHVNKSN 296 (499)
T ss_pred CCccccCchhcCcEECCCC
Confidence 99 654 57788887766
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=229.10 Aligned_cols=240 Identities=16% Similarity=0.217 Sum_probs=167.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhh----------------------cccc------
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC----------------------VGTL------ 111 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~----------------------~~~~------ 111 (351)
..++||+||||||||++||..|++.|.+|+|||++.. ... ++...| .|..
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~-GGt-c~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 81 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTI-GGT-CVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVV 81 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcccc-ccc-eecCCccccHHHHHHHHHHHHHhhccccCCcccCCCcc
Confidence 4568999999999999999999999999999998641 110 000000 0110
Q ss_pred cccccccchhcc---------chhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCc
Q 018704 112 EFRSVAEPIARI---------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (351)
Q Consensus 112 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p 182 (351)
++..+....... ...+....++.++.+.+..++.+.+.+.+. ++. ..++.||+||||||+.|
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~---~g~------~~~~~~d~lViATGs~p 152 (468)
T PRK14694 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLN---DGG------EQTVHFDRAFIGTGARP 152 (468)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEec---CCC------eEEEECCEEEEeCCCCC
Confidence 000111011111 011223447899999999998776555542 332 12799999999999999
Q ss_pred CCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhc
Q 018704 183 STFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS 262 (351)
Q Consensus 183 ~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~ 262 (351)
+.|++||.+...+ + +..+...+ .. ..++++|||+|.+|+|+|..|.+++
T Consensus 153 ~~p~i~G~~~~~~-~-~~~~~~~l----------~~----------~~~~vvViG~G~~G~E~A~~l~~~g--------- 201 (468)
T PRK14694 153 AEPPVPGLAETPY-L-TSTSALEL----------DH----------IPERLLVIGASVVALELAQAFARLG--------- 201 (468)
T ss_pred CCCCCCCCCCCce-E-cchhhhch----------hc----------CCCeEEEECCCHHHHHHHHHHHHcC---------
Confidence 9999999853211 1 11122111 11 1249999999999999999999887
Q ss_pred CCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeCC--eEEe-cCCcEEeccEEEEecCCCCc-c
Q 018704 263 HVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLIL-NDGTEVPYGLLVWSTGVGPS-T 337 (351)
Q Consensus 263 ~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~~--~v~~-~~g~~~~~D~vi~a~G~~p~-~ 337 (351)
.+|+++++.++++.+++++.+.+.+.+++.||+++.+ .|.+++.+ .+.+ .++.++++|.||+|+|.+|+ +
T Consensus 202 -----~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 202 -----SRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred -----CeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcC
Confidence 8999999888888889999999999999999999999 48888642 2322 23447999999999999999 5
Q ss_pred cc--ccCCCCC
Q 018704 338 LV--KSLDLPK 346 (351)
Q Consensus 338 ~~--~~~gl~~ 346 (351)
++ +.+|++.
T Consensus 277 ~l~l~~~g~~~ 287 (468)
T PRK14694 277 NLNLESIGVET 287 (468)
T ss_pred CCCchhcCccc
Confidence 43 4566664
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=228.63 Aligned_cols=239 Identities=20% Similarity=0.246 Sum_probs=164.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcccc---chhhh----------------hhhcccc-------ccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF---TPLLA----------------STCVGTL-------EFR 114 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~---~~~~~----------------~~~~~~~-------~~~ 114 (351)
.++||+||||||+|++||.+|++.|++|+|||+...... ..+.+ ....|.. ++.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 358999999999999999999999999999998632110 00000 0001111 111
Q ss_pred ccccch-------hccchhhhcC-CCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 115 SVAEPI-------ARIQPAISRE-PGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 115 ~~~~~~-------~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
.+.... .......... .++.++.+.... .+.+.+.+ ++. .+.||+||||||+.|+.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~--~~~~~v~v----~~~--------~~~~d~lViATGs~p~~p~ 149 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF--ESPNTVRV----GGE--------TLRAKRIFINTGARAAIPP 149 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE--ccCCEEEE----CcE--------EEEeCEEEEcCCCCCCCCC
Confidence 010000 0111112223 377777766543 34556654 233 7899999999999999999
Q ss_pred CCCccc-cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 187 IHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 187 i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
+||.+. ..++.. +... .... .++++|||||++|+|+|..|.+++
T Consensus 150 i~G~~~~~~~~~~---~~~~----------~~~~----------~~~vvVIGgG~~g~E~A~~l~~~G------------ 194 (463)
T PRK06370 150 IPGLDEVGYLTNE---TIFS----------LDEL----------PEHLVIIGGGYIGLEFAQMFRRFG------------ 194 (463)
T ss_pred CCCCCcCceEcch---HhhC----------cccc----------CCEEEEECCCHHHHHHHHHHHHcC------------
Confidence 999753 222221 1111 1112 259999999999999999999877
Q ss_pred CccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeCC--e--EEec---CCcEEeccEEEEecCCCCc
Q 018704 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILN---DGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 266 ~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~~--~--v~~~---~g~~~~~D~vi~a~G~~p~ 336 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++++ +|.+++.+ + +.+. ++.++++|.||+|+|++|+
T Consensus 195 --~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 195 --SEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred --CeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcC
Confidence 899999997 4777888899999999999999999999 48888752 2 3332 3457999999999999999
Q ss_pred -c-c-cccCCCCCCCCC
Q 018704 337 -T-L-VKSLDLPKSPGG 350 (351)
Q Consensus 337 -~-~-~~~~gl~~~~~G 350 (351)
+ + ++..|++++++|
T Consensus 273 ~~~l~l~~~g~~~~~~G 289 (463)
T PRK06370 273 TDDLGLEAAGVETDARG 289 (463)
T ss_pred CCCcCchhhCceECCCC
Confidence 5 4 567788777666
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=218.05 Aligned_cols=240 Identities=19% Similarity=0.193 Sum_probs=161.0
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc---cccchhhhhhhcccccccccccchhccchhhhcCCCeEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH---MVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (351)
...+||+|||||||||+||..|++.|+++++||.... +.+.+...... +....... ..+.+.........+..+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 81 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWP-GDPNDLTG-PLLMERMHEHATKFETEII 81 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCC-CCCCCCCH-HHHHHHHHHHHHHCCCEEE
Confidence 3468999999999999999999999999999985432 11111111111 10010001 1112222222333345566
Q ss_pred EEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhc
Q 018704 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 137 ~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
...|..++...+.+.+.. +.. .+.||+||+|||+.|+.|++||.+.. ....+..+..+....
T Consensus 82 ~~~v~~v~~~~~~~~v~~--~~~--------~~~~d~vilAtG~~~~~~~i~g~~~~--~~~~v~~~~~~~~~~------ 143 (321)
T PRK10262 82 FDHINKVDLQNRPFRLTG--DSG--------EYTCDALIIATGASARYLGLPSEEAF--KGRGVSACATCDGFF------ 143 (321)
T ss_pred eeEEEEEEecCCeEEEEe--cCC--------EEEECEEEECCCCCCCCCCCCCHHHc--CCCcEEEeecCCHHH------
Confidence 667888888888877643 223 68999999999999999999996421 111111111111111
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~ 296 (351)
..+++++|||+|++|+|+|..|.+++ .+|+++++...+. .++.+.+.+.+.+++
T Consensus 144 -----------~~g~~vvVvGgG~~g~e~A~~l~~~~--------------~~Vtlv~~~~~~~-~~~~~~~~~~~~l~~ 197 (321)
T PRK10262 144 -----------YRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR-AEKILIKRLMDKVEN 197 (321)
T ss_pred -----------cCCCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEECCccC-CCHHHHHHHHhhccC
Confidence 23469999999999999999999887 8999999975332 345677888888999
Q ss_pred cCcEEEcCe-EEEEeCC-----eEEecCC------cEEeccEEEEecCCCCc-cccccCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQ-----KLILNDG------TEVPYGLLVWSTGVGPS-TLVKSLDLPK 346 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~-----~v~~~~g------~~~~~D~vi~a~G~~p~-~~~~~~gl~~ 346 (351)
.||+++++. ++++.++ ++++.++ +++++|.||+++|++|+ .++.. ++++
T Consensus 198 ~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~l~~ 259 (321)
T PRK10262 198 GNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-QLEL 259 (321)
T ss_pred CCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-cccc
Confidence 999999994 9999764 3666532 36999999999999999 55442 4444
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=228.36 Aligned_cols=249 Identities=22% Similarity=0.301 Sum_probs=168.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc-CceEEEEcCC--------Cccccchhhhhhh---------------------ccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPR--------NHMVFTPLLASTC---------------------VGT 110 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~-g~~v~vie~~--------~~~~~~~~~~~~~---------------------~~~ 110 (351)
..+||+||||||+|+.||..+++. |.+|+|||++ ..+... ++...| .|.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGt-Cln~GCiPsK~l~~~a~~~~~~~~~~~~gi 80 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGT-CVNVGCVPKKLMVTGAQYMDTLRESAGFGW 80 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCe-ecCcCCccHHHHHHHHHHHHHHHHhhccCe
Confidence 358999999999999999999996 9999999973 222111 000000 010
Q ss_pred c--------ccccccc-------chhccchhhhcC-CCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEE
Q 018704 111 L--------EFRSVAE-------PIARIQPAISRE-PGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKL 174 (351)
Q Consensus 111 ~--------~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~l 174 (351)
. ++..+.. .+.......... .++.++.+...-+ +.+++.+....++. ..+...+.||+|
T Consensus 81 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~--~~~~v~V~~~~~~~---~~~~~~~~~d~l 155 (486)
T TIGR01423 81 EFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALE--DKNVVLVRESADPK---SAVKERLQAEHI 155 (486)
T ss_pred eccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEc--cCCEEEEeeccCCC---CCcceEEECCEE
Confidence 0 0000000 011111112223 4788888875544 45677764321111 000237999999
Q ss_pred EEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHH
Q 018704 175 VIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM 254 (351)
Q Consensus 175 viAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~ 254 (351)
|||||+.|..|++||.+ .+++.. +... +... .++++|||||++|+|+|..+..+.
T Consensus 156 IIATGs~p~~p~i~G~~-~~~~~~---~~~~----------~~~~----------~~~vvIIGgG~iG~E~A~~~~~l~- 210 (486)
T TIGR01423 156 LLATGSWPQMLGIPGIE-HCISSN---EAFY----------LDEP----------PRRVLTVGGGFISVEFAGIFNAYK- 210 (486)
T ss_pred EEecCCCCCCCCCCChh-heechh---hhhc----------cccC----------CCeEEEECCCHHHHHHHHHHHHhc-
Confidence 99999999999999973 333221 2111 1112 259999999999999998887652
Q ss_pred HHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEE
Q 018704 255 RDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLL 327 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~v 327 (351)
+.+.+|+++++. .+++.+++++.+.+.+.|++.||+++++. +++++. + .+.+.+|+++++|.|
T Consensus 211 ----------~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~v 280 (486)
T TIGR01423 211 ----------PRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVV 280 (486)
T ss_pred ----------cCCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEE
Confidence 123899999997 57888999999999999999999999995 888863 2 466678888999999
Q ss_pred EEecCCCCc-cc--cccCCCCCCCCC
Q 018704 328 VWSTGVGPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 328 i~a~G~~p~-~~--~~~~gl~~~~~G 350 (351)
++|+|++|+ .+ ++.+|++++++|
T Consensus 281 l~a~G~~Pn~~~l~l~~~gl~~~~~G 306 (486)
T TIGR01423 281 MMAIGRVPRTQTLQLDKVGVELTKKG 306 (486)
T ss_pred EEeeCCCcCcccCCchhhCceECCCC
Confidence 999999999 43 456778777666
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=198.98 Aligned_cols=242 Identities=17% Similarity=0.203 Sum_probs=180.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCC--------CccccchhhhhhhcccccccccccchhccchhhhcCCCe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR--------NHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGS 133 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (351)
+.+|+|||+|||+.+||+++++..++.+|+|.. .++.......+. .|.|+- -....+.+.+.......+.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNf-PGFPdg-i~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENF-PGFPDG-ITGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccC-CCCCcc-cccHHHHHHHHHHHHhhcc
Confidence 458999999999999999999999999999942 222111111100 011111 1123344555556777799
Q ss_pred EEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHh
Q 018704 134 YFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN 213 (351)
Q Consensus 134 ~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (351)
.++...|.++|.+.+.+.+.+ +.. .+.+|.||+|||+..+.+.+||..+..+|.+.+..+.-+.+..
T Consensus 86 ~i~tEtVskv~~sskpF~l~t--d~~--------~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaa--- 152 (322)
T KOG0404|consen 86 EIITETVSKVDLSSKPFKLWT--DAR--------PVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAA--- 152 (322)
T ss_pred eeeeeehhhccccCCCeEEEe--cCC--------ceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcc---
Confidence 999999999999999998875 333 8999999999999999999999855558888887776665542
Q ss_pred hhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHH-
Q 018704 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT- 292 (351)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~- 292 (351)
|. -+.|..+|||||++|+|.|.+|..++ .+|++++|++.+ +..+.+++
T Consensus 153 ------pi------frnk~laVIGGGDsA~EEA~fLtkya--------------skVyii~Rrd~f-----RAs~~Mq~r 201 (322)
T KOG0404|consen 153 ------PI------FRNKPLAVIGGGDSAMEEALFLTKYA--------------SKVYIIHRRDHF-----RASKIMQQR 201 (322)
T ss_pred ------hh------hcCCeeEEEcCcHHHHHHHHHHHhhc--------------cEEEEEEEhhhh-----hHHHHHHHH
Confidence 21 45579999999999999999999998 999999998655 34455544
Q ss_pred HhhhcCcEEEcCe-EEEEeCC-----eEEe-----cCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 293 QLSKSGVRLVRGI-VKDVDSQ-----KLIL-----NDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 293 ~l~~~gV~~~~~~-v~~v~~~-----~v~~-----~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
..+..+|+++++. +.+..++ ++.+ .+.+.++++.+++++|+.|+ .|++. ++++|++|
T Consensus 202 a~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~G 270 (322)
T KOG0404|consen 202 AEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDG 270 (322)
T ss_pred HhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCc
Confidence 4556699999996 5555443 3333 33456999999999999999 88887 89999887
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=215.82 Aligned_cols=239 Identities=19% Similarity=0.222 Sum_probs=158.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccc--cccchhccchhhhcCCCeEEEEEEe
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS--VAEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
+||+|||||+|||+||..|++.|++|+|||++.... ...........+.+.. ....+...........++.++..+|
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v 79 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGG-QLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEV 79 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCc-ceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence 589999999999999999999999999999875210 0000000000111100 0011222222233344677777999
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (351)
+.++.+.+.+.++. .++. .+.||+||+|||..|+.|.+||.+... ...+.....+...
T Consensus 80 ~~v~~~~~~~~v~~-~~~~--------~~~~d~liiAtG~~~~~~~i~g~~~~~--~~~~~~~~~~~~~----------- 137 (300)
T TIGR01292 80 IKVDLSDRPFKVKT-GDGK--------EYTAKAVIIATGASARKLGIPGEDEFL--GRGVSYCATCDGP----------- 137 (300)
T ss_pred EEEEecCCeeEEEe-CCCC--------EEEeCEEEECCCCCcccCCCCChhhcC--CccEEEeeecChh-----------
Confidence 99999887777654 3444 899999999999999999999864211 0000000000001
Q ss_pred CCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhc-Cc
Q 018704 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS-GV 299 (351)
Q Consensus 221 ~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~-gV 299 (351)
....++|+|||+|++|+|+|..|.+.+ .+|+++++.+.+. ....+.+.+++. ||
T Consensus 138 ------~~~~~~v~ViG~G~~~~e~a~~l~~~~--------------~~V~~v~~~~~~~-----~~~~~~~~l~~~~gv 192 (300)
T TIGR01292 138 ------FFKNKEVAVVGGGDSAIEEALYLTRIA--------------KKVTLVHRRDKFR-----AEKILLDRLRKNPNI 192 (300)
T ss_pred ------hcCCCEEEEECCChHHHHHHHHHHhhc--------------CEEEEEEeCcccC-----cCHHHHHHHHhCCCe
Confidence 023469999999999999999998776 8999999975332 123445566676 99
Q ss_pred EEEcCe-EEEEeCC----eEEec---CC--cEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 300 RLVRGI-VKDVDSQ----KLILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 300 ~~~~~~-v~~v~~~----~v~~~---~g--~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
+++.+. +++++.+ .+++. +| .++++|.||+|+|++|+ ++++.+ ++.+++|
T Consensus 193 ~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g 253 (300)
T TIGR01292 193 EFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGG 253 (300)
T ss_pred EEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCC
Confidence 999994 9888764 24443 23 56999999999999999 687776 5555554
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=228.19 Aligned_cols=242 Identities=21% Similarity=0.303 Sum_probs=164.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc----hhhhh-----------h-----hccc------cccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT----PLLAS-----------T-----CVGT------LEFR 114 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~----~~~~~-----------~-----~~~~------~~~~ 114 (351)
..+||+||||||||++||..|++.|.+|+|||++. +... ...+. . ..+. ..+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 35899999999999999999999999999999875 2111 00000 0 0000 0111
Q ss_pred ccccchhc-------cchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 115 SVAEPIAR-------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 115 ~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
.+...... -........++.++.+.++.++.. .+.+...+++. .+.||+||||||+.|..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~--~~~v~~~~~~~--------~~~~d~lViAtGs~p~~~-- 149 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPN--TVRVMTEDGEQ--------TYTAKNIILATGSRPREL-- 149 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCC--EEEEecCCCcE--------EEEeCEEEEeCCCCCCCC--
Confidence 11111000 011233456888888888877654 44443222223 899999999999998754
Q ss_pred CCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 018704 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (351)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~ 267 (351)
||.+.....+.+..+...+. . ..++++|||||++|+|+|..|.+++
T Consensus 150 pg~~~~~~~v~~~~~~~~~~----------~----------~~~~vvVvGgG~~g~E~A~~l~~~g-------------- 195 (462)
T PRK06416 150 PGIEIDGRVIWTSDEALNLD----------E----------VPKSLVVIGGGYIGVEFASAYASLG-------------- 195 (462)
T ss_pred CCCCCCCCeEEcchHhhCcc----------c----------cCCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 45432211222222222111 1 1259999999999999999998876
Q ss_pred cEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC--e--EEecCC---cEEeccEEEEecCCCCc-c
Q 018704 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K--LILNDG---TEVPYGLLVWSTGVGPS-T 337 (351)
Q Consensus 268 ~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~--~--v~~~~g---~~~~~D~vi~a~G~~p~-~ 337 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++.+ + +.+.+| +++++|.||+|+|++|+ .
T Consensus 196 ~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 196 AEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred CeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 899999996 57788899999999999999999999994 9888753 3 344555 67999999999999999 5
Q ss_pred cc--ccCCCCCCCCC
Q 018704 338 LV--KSLDLPKSPGG 350 (351)
Q Consensus 338 ~~--~~~gl~~~~~G 350 (351)
++ +.+|++++ +|
T Consensus 276 ~l~l~~~gl~~~-~g 289 (462)
T PRK06416 276 NLGLEELGVKTD-RG 289 (462)
T ss_pred CCCchhcCCeec-CC
Confidence 53 56677765 44
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=227.72 Aligned_cols=240 Identities=19% Similarity=0.209 Sum_probs=166.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC--------ccccchhhhhhh---------------------cccc-
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFTPLLASTC---------------------VGTL- 111 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~--------~~~~~~~~~~~~---------------------~~~~- 111 (351)
++||+||||||+|+.+|..+++.|.+|+|||+.. .+... ++...| .|..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGt-c~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGT-CVNVGCIPKKLMHQAALLGQALKDSRNYGWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccc-ccccCcCchhHHHHHHHHHHHHhhhhhcCccc
Confidence 4799999999999999999999999999999631 11100 000000 0000
Q ss_pred cc---cccc----------cchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEec
Q 018704 112 EF---RSVA----------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (351)
Q Consensus 112 ~~---~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAt 178 (351)
.. .++. ..+...........++.++.+...-++. +.+.+... ++. ...+.||+|||||
T Consensus 81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~-~g~------~~~~~~d~lVIAT 151 (484)
T TIGR01438 81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK--HRIKATNK-KGK------EKIYSAERFLIAT 151 (484)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEecc-CCC------ceEEEeCEEEEec
Confidence 00 0010 0011111123445578888887776654 45655322 221 1279999999999
Q ss_pred CCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHH
Q 018704 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (351)
Q Consensus 179 G~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~ 258 (351)
|+.|+.|++||.++..++. ++... +...| ++++|||||.+|+|+|..|.+++
T Consensus 152 Gs~p~~p~ipG~~~~~~~~---~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~l~~~G----- 203 (484)
T TIGR01438 152 GERPRYPGIPGAKELCITS---DDLFS----------LPYCP----------GKTLVVGASYVALECAGFLAGIG----- 203 (484)
T ss_pred CCCCCCCCCCCccceeecH---HHhhc----------ccccC----------CCEEEECCCHHHHHHHHHHHHhC-----
Confidence 9999999999975433222 12111 11223 38999999999999999999887
Q ss_pred hhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCC---cEEeccEEEEe
Q 018704 259 QRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDG---TEVPYGLLVWS 330 (351)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g---~~~~~D~vi~a 330 (351)
.+|+++++..+++.+++++.+.+.+.|++.||+++++. +.+++. + .+.+.++ .++++|.||+|
T Consensus 204 ---------~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a 274 (484)
T TIGR01438 204 ---------LDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLA 274 (484)
T ss_pred ---------CcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEE
Confidence 89999998778899999999999999999999999994 777753 2 3555555 37999999999
Q ss_pred cCCCCc-cc--cccCCCCCCC
Q 018704 331 TGVGPS-TL--VKSLDLPKSP 348 (351)
Q Consensus 331 ~G~~p~-~~--~~~~gl~~~~ 348 (351)
+|++|+ ++ ++.+|+++++
T Consensus 275 ~G~~pn~~~l~l~~~gv~~~~ 295 (484)
T TIGR01438 275 IGRDACTRKLNLENVGVKINK 295 (484)
T ss_pred ecCCcCCCcCCcccccceecC
Confidence 999999 54 4677777654
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-27 Score=223.85 Aligned_cols=244 Identities=21% Similarity=0.289 Sum_probs=170.5
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc---------cchhhhhh----------hcccc---------ccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV---------FTPLLAST----------CVGTL---------EFR 114 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~---------~~~~~~~~----------~~~~~---------~~~ 114 (351)
++|+|||||++|+.||..+++.|.+|+|||++.... .-.++... ..|.. ++.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP 81 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence 589999999999999999999999999999864210 00011000 00110 000
Q ss_pred ccccch-------hccchhhhcCCCeEEEEEEeeeEe--CCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 115 SVAEPI-------ARIQPAISREPGSYFFLSHCAGID--TDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 115 ~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~i~--~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
.+.... ...........++.++.+.+..++ .+.+.+.+.. .++. ...+.||+||||||+.|+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~-~~g~------~~~~~~d~lViATGs~p~~~ 154 (466)
T PRK07845 82 AVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTT-ADGG------EETLDADVVLIATGASPRIL 154 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEe-CCCc------eEEEecCEEEEcCCCCCCCC
Confidence 000000 111112233457899999888865 5567776643 2332 12689999999999999877
Q ss_pred CCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 186 GIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 186 ~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
++++.+ +.++++.++.+. ...| ++++|||+|.+|+|+|..|.+++
T Consensus 155 p~~~~~~~~v~~~~~~~~~-------------~~~~----------~~vvVIGgG~ig~E~A~~l~~~g----------- 200 (466)
T PRK07845 155 PTAEPDGERILTWRQLYDL-------------DELP----------EHLIVVGSGVTGAEFASAYTELG----------- 200 (466)
T ss_pred CCCCCCCceEEeehhhhcc-------------cccC----------CeEEEECCCHHHHHHHHHHHHcC-----------
Confidence 655432 234433322211 1122 49999999999999999999887
Q ss_pred CCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecCCcEEeccEEEEecCCCCc-c
Q 018704 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS-T 337 (351)
Q Consensus 265 ~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~g~~~~~D~vi~a~G~~p~-~ 337 (351)
.+|+++++. .+++.+++++.+.+.+.|+++||+++.+. |.+++. ++ +.+.+|+++++|.||+|+|++|+ .
T Consensus 201 ---~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 201 ---VKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred ---CeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 899999986 57788899999999999999999999994 888853 33 45578889999999999999999 4
Q ss_pred c--cccCCCCCCCCC
Q 018704 338 L--VKSLDLPKSPGG 350 (351)
Q Consensus 338 ~--~~~~gl~~~~~G 350 (351)
+ ++++|++++++|
T Consensus 278 ~l~l~~~gl~~~~~G 292 (466)
T PRK07845 278 GLGLEEAGVELTPSG 292 (466)
T ss_pred CCCchhhCceECCCC
Confidence 3 577888887766
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=227.93 Aligned_cols=244 Identities=15% Similarity=0.169 Sum_probs=167.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----hhh---------------hhh--cccc------cc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLA---------------STC--VGTL------EF 113 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----~~~---------------~~~--~~~~------~~ 113 (351)
..+||+||||||+|++||..|++.|.+|+|||++ .+.... +.+ ... .|.. .+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 4689999999999999999999999999999986 321110 000 000 0110 00
Q ss_pred cccccchhc---------cchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC
Q 018704 114 RSVAEPIAR---------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 114 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
..+...... +...+....++.++.+.+..++.. .+.+.. .++. ...+.||+||||||+.|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~-~~g~------~~~~~~d~lviAtGs~p~~ 246 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQ--TLIVRL-NDGG------ERVVAFDRCLIATGASPAV 246 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCC--EEEEEe-CCCc------eEEEEcCEEEEcCCCCCCC
Confidence 000000000 001122233788888888877654 454432 2332 1379999999999999999
Q ss_pred CCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 185 p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
|++||.+...+ +... + .+. ... ..++++|||||.+|+|+|..|.+++
T Consensus 247 p~i~g~~~~~~-~~~~-~--~~~--------~~~----------~~~~vvViGgG~ig~E~A~~l~~~g----------- 293 (561)
T PRK13748 247 PPIPGLKETPY-WTST-E--ALV--------SDT----------IPERLAVIGSSVVALELAQAFARLG----------- 293 (561)
T ss_pred CCCCCCCccce-EccH-H--Hhh--------ccc----------CCCeEEEECCCHHHHHHHHHHHHcC-----------
Confidence 99999753211 1111 1 111 111 2259999999999999999999887
Q ss_pred CCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeEEec-CCcEEeccEEEEecCCCCc-cc-
Q 018704 265 KDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLILN-DGTEVPYGLLVWSTGVGPS-TL- 338 (351)
Q Consensus 265 ~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v~~~-~g~~~~~D~vi~a~G~~p~-~~- 338 (351)
.+|+++++.++++.+++++.+.+.+.+++.||+++.+. |++++. +.+.+. ++.++++|.||+|+|++|+ .+
T Consensus 294 ---~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l 370 (561)
T PRK13748 294 ---SKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSL 370 (561)
T ss_pred ---CEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCc
Confidence 89999999877777899999999999999999999994 888864 333332 2346999999999999999 54
Q ss_pred -cccCCCCCCCCC
Q 018704 339 -VKSLDLPKSPGG 350 (351)
Q Consensus 339 -~~~~gl~~~~~G 350 (351)
++++|++++++|
T Consensus 371 ~l~~~g~~~~~~g 383 (561)
T PRK13748 371 ALDAAGVTVNAQG 383 (561)
T ss_pred CchhcCceECCCC
Confidence 467788887766
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=226.40 Aligned_cols=242 Identities=18% Similarity=0.212 Sum_probs=164.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----hhhh------h----------hccc------ccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLAS------T----------CVGT------LEFRS 115 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----~~~~------~----------~~~~------~~~~~ 115 (351)
++||+||||||+|++||..|++.|.+|+|||+.+.+.... +.+. . ..|. .++..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDK 83 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHH
Confidence 5899999999999999999999999999999865432110 0000 0 0000 00111
Q ss_pred cccch-------hccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC-CCC
Q 018704 116 VAEPI-------ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST-FGI 187 (351)
Q Consensus 116 ~~~~~-------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~-p~i 187 (351)
+.... ......+....++.++.+.+..++ .+.+.+.. .+++ ...+.||+||||||+.|+. |.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~--~~~v~v~~-~~g~------~~~~~~d~lViATGs~p~~~p~~ 154 (471)
T PRK06467 84 MRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTG--GNTLEVTG-EDGK------TTVIEFDNAIIAAGSRPIQLPFI 154 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEec-CCCc------eEEEEcCEEEEeCCCCCCCCCCC
Confidence 10000 001112234457888888777654 46666643 2331 1279999999999999974 556
Q ss_pred CCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 018704 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (351)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~ 267 (351)
++..+.+++. .++.. +...| ++++|||||.+|+|+|..+.+++
T Consensus 155 ~~~~~~v~~~---~~~~~----------~~~~~----------~~vvIiGgG~iG~E~A~~l~~~G-------------- 197 (471)
T PRK06467 155 PHDDPRIWDS---TDALE----------LKEVP----------KRLLVMGGGIIGLEMGTVYHRLG-------------- 197 (471)
T ss_pred CCCCCcEECh---HHhhc----------cccCC----------CeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 6543333322 22221 11122 49999999999999999999887
Q ss_pred cEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecC--C--cEEeccEEEEecCCCCc-
Q 018704 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILND--G--TEVPYGLLVWSTGVGPS- 336 (351)
Q Consensus 268 ~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~--g--~~~~~D~vi~a~G~~p~- 336 (351)
.+|+++++. .+++.+++++.+.+.+.+++. |+++++. |.+++. ++ +.+.+ | +++++|.||+|+|++|+
T Consensus 198 ~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 198 SEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred CCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccC
Confidence 899999997 578889999999999999888 9999994 888863 33 33433 2 36999999999999999
Q ss_pred cc--cccCCCCCCCCC
Q 018704 337 TL--VKSLDLPKSPGG 350 (351)
Q Consensus 337 ~~--~~~~gl~~~~~G 350 (351)
++ ++..|++++++|
T Consensus 277 ~~l~~~~~gl~~~~~G 292 (471)
T PRK06467 277 KLLDAEKAGVEVDERG 292 (471)
T ss_pred CccChhhcCceECCCC
Confidence 53 456678877766
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=225.99 Aligned_cols=238 Identities=22% Similarity=0.258 Sum_probs=165.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc-------h---hh-----hhhh----cc------cccccccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LL-----ASTC----VG------TLEFRSVA 117 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~-------~---~~-----~~~~----~~------~~~~~~~~ 117 (351)
+||+||||||+|++||.+|++.|.+|+|||++... .. | ++ .... .+ .+++..+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~G-G~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLG-GTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCccc-CCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 58999999999999999999999999999986421 11 0 00 0000 00 00111000
Q ss_pred cc-------hhc-cchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCC
Q 018704 118 EP-------IAR-IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (351)
Q Consensus 118 ~~-------~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g 189 (351)
.. +.. ....+....++.++.+++..++ .+.+.+. ++. ..+.||+||||||+.|+.|++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v~---~g~-------~~~~~~~lIiATGs~p~~p~i~G 147 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--PKTVKVD---LGR-------EVRGAKRFLIATGARPAIPPIPG 147 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--CCEEEEc---CCe-------EEEEeCEEEEcCCCCCCCCCCCC
Confidence 00 111 0112334457888888776554 4566552 221 26899999999999999999999
Q ss_pred cccc-ccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 018704 190 VKEN-ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (351)
Q Consensus 190 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~ 268 (351)
.+.. .++. .++.. .... .++++|||+|.+|+|+|..|.+++ .
T Consensus 148 ~~~~~~~~~---~~~~~----------~~~~----------~~~vvIIGgG~~g~E~A~~l~~~g--------------~ 190 (463)
T TIGR02053 148 LKEAGYLTS---EEALA----------LDRI----------PESLAVIGGGAIGVELAQAFARLG--------------S 190 (463)
T ss_pred cccCceECc---hhhhC----------cccC----------CCeEEEECCCHHHHHHHHHHHHcC--------------C
Confidence 7532 2222 12111 1111 249999999999999999999877 8
Q ss_pred EEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEec---CCcEEeccEEEEecCCCCc-c-
Q 018704 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILN---DGTEVPYGLLVWSTGVGPS-T- 337 (351)
Q Consensus 269 ~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~---~g~~~~~D~vi~a~G~~p~-~- 337 (351)
+|+++++. .+++.+++++...+.+.+++.||+++.+. |++++.+ .+.+. +++++++|.||+|+|++|+ +
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 191 EVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred cEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 99999997 57788899999999999999999999995 9888642 23333 2357999999999999999 5
Q ss_pred c-cccCCCCCCCCC
Q 018704 338 L-VKSLDLPKSPGG 350 (351)
Q Consensus 338 ~-~~~~gl~~~~~G 350 (351)
+ ++..|++++++|
T Consensus 271 l~l~~~g~~~~~~G 284 (463)
T TIGR02053 271 LGLEKAGVKLDERG 284 (463)
T ss_pred CCccccCCEECCCC
Confidence 4 677778777665
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=207.39 Aligned_cols=229 Identities=22% Similarity=0.361 Sum_probs=164.0
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEc---CCCccccchhhhhhhcc---------------------------
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVS---PRNHMVFTPLLASTCVG--------------------------- 109 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie---~~~~~~~~~~~~~~~~~--------------------------- 109 (351)
.-.+|.+|||||.+||+||++++..|.+|.++| |.+. ...+.+.+.|.+
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~-GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW 95 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQ-GTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW 95 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCC-CCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCC
Confidence 456999999999999999999999999999999 2221 112223333322
Q ss_pred -------cccccccccchhccchhhhcCCCeE---EEEEEeeeEeC-----CCCEEEEEeecCccccCCCceeEeeccEE
Q 018704 110 -------TLEFRSVAEPIARIQPAISREPGSY---FFLSHCAGIDT-----DNHVVHCETVTDELRTLEPWKFKISYDKL 174 (351)
Q Consensus 110 -------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~d~l 174 (351)
..++..+.+.+++ .+......+ .+..+|..++. +.+.+..+.. .++ .+.++++.+
T Consensus 96 ~~~e~~ikhdW~~l~~sVqn---hI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~-~gk------~~~~ta~~f 165 (503)
T KOG4716|consen 96 NVDEQKIKHDWNKLVKSVQN---HIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNK-KGK------ERFLTAENF 165 (503)
T ss_pred CCccccccccHHHHHHHHHH---HhhhccceEEEEeccceeeeeecceeecccceEEEecC-CCc------eEEeecceE
Confidence 0011111112222 222222222 23335555542 3445554332 332 358999999
Q ss_pred EEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHH
Q 018704 175 VIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM 254 (351)
Q Consensus 175 viAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~ 254 (351)
|||||.+|++|+|||..+.+++++++ |.+...|+ +.+|||+|++|+|+|.+|..+|
T Consensus 166 vIatG~RPrYp~IpG~~Ey~ITSDDl-------------Fsl~~~PG----------kTLvVGa~YVaLECAgFL~gfg- 221 (503)
T KOG4716|consen 166 VIATGLRPRYPDIPGAKEYGITSDDL-------------FSLPYEPG----------KTLVVGAGYVALECAGFLKGFG- 221 (503)
T ss_pred EEEecCCCCCCCCCCceeeeeccccc-------------ccccCCCC----------ceEEEccceeeeehhhhHhhcC-
Confidence 99999999999999988888888766 66778888 9999999999999999999988
Q ss_pred HHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE---EeCCeEEe--c---CCc--EEe
Q 018704 255 RDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD---VDSQKLIL--N---DGT--EVP 323 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~---v~~~~v~~--~---~g~--~~~ 323 (351)
.+|+++.|+-++++||.++++.+.++|+++||++.... +.+ ++..++.. + .++ +-+
T Consensus 222 -------------~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ 288 (503)
T KOG4716|consen 222 -------------YDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEE 288 (503)
T ss_pred -------------CCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccch
Confidence 89999999999999999999999999999999999883 444 44444222 1 222 356
Q ss_pred ccEEEEecCCCCc
Q 018704 324 YGLLVWSTGVGPS 336 (351)
Q Consensus 324 ~D~vi~a~G~~p~ 336 (351)
+|.|+||+|..+.
T Consensus 289 ydTVl~AiGR~~~ 301 (503)
T KOG4716|consen 289 YDTVLWAIGRKAL 301 (503)
T ss_pred hhhhhhhhccccc
Confidence 9999999999998
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=220.41 Aligned_cols=236 Identities=19% Similarity=0.245 Sum_probs=161.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc---cchhhhh-----------h-----hccc------ccccccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV---FTPLLAS-----------T-----CVGT------LEFRSVA 117 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~---~~~~~~~-----------~-----~~~~------~~~~~~~ 117 (351)
+||+||||||+|.+||..+ .|.+|+|||++.... +..+.+. . ..|. .++..+.
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIV 79 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHH
Confidence 7999999999999998764 599999999753210 0000000 0 0011 0111111
Q ss_pred cch----hcc----chhh-hcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCC
Q 018704 118 EPI----ARI----QPAI-SREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (351)
Q Consensus 118 ~~~----~~~----~~~~-~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~ 188 (351)
... .++ .... ....++.++.++...+ +.+++.+ .+++ .+.||+||||||+.|+.|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~V~v---~~g~--------~~~~d~lViATGs~p~~p~i~ 146 (451)
T PRK07846 80 SRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI--GPKTLRT---GDGE--------EITADQVVIAAGSRPVIPPVI 146 (451)
T ss_pred HHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe--cCCEEEE---CCCC--------EEEeCEEEEcCCCCCCCCCCC
Confidence 111 111 1111 3345677777776665 4667766 2454 799999999999999999999
Q ss_pred CccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 018704 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (351)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~ 268 (351)
|.+.. .+.+.++...+.. ..++++|||||++|+|+|..|.+++ .
T Consensus 147 g~~~~--~~~~~~~~~~l~~--------------------~~~~vvIIGgG~iG~E~A~~l~~~G--------------~ 190 (451)
T PRK07846 147 ADSGV--RYHTSDTIMRLPE--------------------LPESLVIVGGGFIAAEFAHVFSALG--------------V 190 (451)
T ss_pred CcCCc--cEEchHHHhhhhh--------------------cCCeEEEECCCHHHHHHHHHHHHcC--------------C
Confidence 86422 1223333322211 1249999999999999999999877 8
Q ss_pred EEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCCCCc-ccc--
Q 018704 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLV-- 339 (351)
Q Consensus 269 ~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~-~~~-- 339 (351)
+|+++++. .+++.+++++.+.+.+.+ +.+|+++.+. |++++.+ .+.+.+|+++++|.|++|+|++|+ +++
T Consensus 191 ~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~ 269 (451)
T PRK07846 191 RVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDA 269 (451)
T ss_pred eEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCc
Confidence 99999997 577888999888777655 5679999994 8888642 355668889999999999999999 664
Q ss_pred ccCCCCCCCCC
Q 018704 340 KSLDLPKSPGG 350 (351)
Q Consensus 340 ~~~gl~~~~~G 350 (351)
+.+|++++++|
T Consensus 270 ~~~gl~~~~~G 280 (451)
T PRK07846 270 AAAGVDVDEDG 280 (451)
T ss_pred hhcCceECCCC
Confidence 56788887766
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-27 Score=225.86 Aligned_cols=229 Identities=14% Similarity=0.230 Sum_probs=156.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhh---------------------ccc-----ccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC---------------------VGT-----LEF 113 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~---------------------~~~-----~~~ 113 (351)
..++||+|||||++|++||..+++.|.+|+|||++. +... ++...| .|. .++
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGt-Cln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGT-CVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-cccc-ccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 466899999999999999999999999999999753 1110 000000 010 011
Q ss_pred cccc-------cchhccchhhhcCCCeEEEEEEeeeEeCCCCEEE--------------------EE-----eecCcccc
Q 018704 114 RSVA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVH--------------------CE-----TVTDELRT 161 (351)
Q Consensus 114 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~--------------------~~-----~~~~~~~~ 161 (351)
..+. ..+.+.........++.++.+...-++ .+++. +. ...++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~--~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~-- 199 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLS--ENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQ-- 199 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEec--CCEEEeeccccccccccccccccceeeeccceecCCCc--
Confidence 1100 011111122334457777776554333 22222 21 112333
Q ss_pred CCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChH
Q 018704 162 LEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241 (351)
Q Consensus 162 ~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~ 241 (351)
.+.||+||||||+.|+.|++||.+ .+++. ++.. + + ...++++|||||.+
T Consensus 200 ------~i~ad~lVIATGS~P~~P~IpG~~-~v~ts---~~~~---~-------l-----------~~pk~VvIIGgG~i 248 (561)
T PTZ00058 200 ------VIEGKNILIAVGNKPIFPDVKGKE-FTISS---DDFF---K-------I-----------KEAKRIGIAGSGYI 248 (561)
T ss_pred ------EEECCEEEEecCCCCCCCCCCCce-eEEEH---HHHh---h-------c-----------cCCCEEEEECCcHH
Confidence 799999999999999999999963 33322 1211 1 1 11359999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC---eE--
Q 018704 242 GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ---KL-- 314 (351)
Q Consensus 242 a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~---~v-- 314 (351)
|+|+|..+.+++ .+|+++++. ++++.+++++.+.+.+.+++.||+++++. |.+++++ ++
T Consensus 249 GlE~A~~l~~~G--------------~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v 314 (561)
T PTZ00058 249 AVELINVVNRLG--------------AESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTI 314 (561)
T ss_pred HHHHHHHHHHcC--------------CcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEE
Confidence 999999999887 899999997 57888999999999999999999999995 8888742 23
Q ss_pred EecCC-cEEeccEEEEecCCCCc-ccc
Q 018704 315 ILNDG-TEVPYGLLVWSTGVGPS-TLV 339 (351)
Q Consensus 315 ~~~~g-~~~~~D~vi~a~G~~p~-~~~ 339 (351)
.+.++ +++++|.|++|+|++|+ +++
T Consensus 315 ~~~~~~~~i~aD~VlvA~Gr~Pn~~~L 341 (561)
T PTZ00058 315 YLSDGRKYEHFDYVIYCVGRSPNTEDL 341 (561)
T ss_pred EECCCCEEEECCEEEECcCCCCCcccc
Confidence 33344 57999999999999999 544
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=222.36 Aligned_cols=233 Identities=14% Similarity=0.158 Sum_probs=154.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhh-----------------------hhhhcc-------c
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL-----------------------ASTCVG-------T 110 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~-----------------------~~~~~~-------~ 110 (351)
..++|+|||||+|||+||++|++.|++|+|+|+++........ ...... .
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 3589999999999999999999999999999988754321111 000000 0
Q ss_pred ccc---cc------------cccchhccchhhhcCCCeE---EEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeecc
Q 018704 111 LEF---RS------------VAEPIARIQPAISREPGSY---FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYD 172 (351)
Q Consensus 111 ~~~---~~------------~~~~~~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d 172 (351)
.++ .. ....+.++...+....++. .++.+|+.++...+.|.++....+. ...+..||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~-----~~~~~~~d 163 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGG-----FSKDEIFD 163 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCC-----ceEEEEcC
Confidence 000 00 0112333333344444433 4567999999888888876543221 12257899
Q ss_pred EEEEecC--CCcCCCCCCCccc---cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHH
Q 018704 173 KLVIALG--AEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSG 247 (351)
Q Consensus 173 ~lviAtG--~~p~~p~i~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~ 247 (351)
+||+||| ..|+.|.+||.+. ..+++..+..... .++|+|+|||+|++|+|+|.
T Consensus 164 ~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~----------------------~~gk~VvVVG~G~Sg~diA~ 221 (461)
T PLN02172 164 AVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDP----------------------FKNEVVVVIGNFASGADISR 221 (461)
T ss_pred EEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccc----------------------cCCCEEEEECCCcCHHHHHH
Confidence 9999999 5699999999853 2234433332222 34569999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeC-CeEEecCCcEEecc
Q 018704 248 ELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS-QKLILNDGTEVPYG 325 (351)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~-~~v~~~~g~~~~~D 325 (351)
+|...+ .+|+++.|....... ..+.....+++.+ .|..+.+ ++|+++||+.+++|
T Consensus 222 ~L~~~a--------------~~V~l~~r~~~~~~~---------~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D 278 (461)
T PLN02172 222 DIAKVA--------------KEVHIASRASESDTY---------EKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYAD 278 (461)
T ss_pred HHHHhC--------------CeEEEEEeecccccc---------ccCcCCCCceEECCcccceecCCeEEECCCCCccCC
Confidence 999887 899999986422100 1111122334444 4655543 56999999999999
Q ss_pred EEEEecCCCCc-cccccCC
Q 018704 326 LLVWSTGVGPS-TLVKSLD 343 (351)
Q Consensus 326 ~vi~a~G~~p~-~~~~~~g 343 (351)
.||+|||++++ +|++..+
T Consensus 279 ~Ii~~TGy~~~~pfL~~~~ 297 (461)
T PLN02172 279 TIVHCTGYKYHFPFLETNG 297 (461)
T ss_pred EEEECCcCCccccccCccc
Confidence 99999999999 9998755
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=218.47 Aligned_cols=244 Identities=16% Similarity=0.169 Sum_probs=165.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhh---------------hhh-----cccccc---cccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA---------------STC-----VGTLEF---RSVA 117 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~---------------~~~-----~~~~~~---~~~~ 117 (351)
.++||+|||||++|+++|+.|++.|.+|+|||+++.+....... ... .|.... .++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 94 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG 94 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence 45899999999999999999999999999999874332111000 000 011000 0010
Q ss_pred cch-------hc-----cchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 118 EPI-------AR-----IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 118 ~~~-------~~-----~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
... .. +...+....++.++.+...-++ .+.+.+.. .+++ ..++.||+||||||+.|+.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~--~~~v~v~~-~~g~------~~~~~~d~lViATGs~p~~p 165 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD--GNTLVVRL-HDGG------ERVLAADRCLIATGSTPTIP 165 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec--CCEEEEEe-CCCc------eEEEEeCEEEEecCCCCCCC
Confidence 000 00 0111111236777777765554 45565543 2332 13799999999999999999
Q ss_pred CCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 186 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
++||.+...++ .. .+. +. ....| ++++|||+|.+|+|+|..+.+++
T Consensus 166 ~i~G~~~~~~~-~~-~~~--l~--------~~~~~----------k~vvVIGgG~iG~E~A~~l~~~G------------ 211 (479)
T PRK14727 166 PIPGLMDTPYW-TS-TEA--LF--------SDELP----------ASLTVIGSSVVAAEIAQAYARLG------------ 211 (479)
T ss_pred CCCCcCcccee-cc-hHH--hc--------cccCC----------CeEEEECCCHHHHHHHHHHHHcC------------
Confidence 99997432111 11 111 11 11122 59999999999999999999887
Q ss_pred CccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeEE--ecCCcEEeccEEEEecCCCCc-cc-
Q 018704 266 DYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLI--LNDGTEVPYGLLVWSTGVGPS-TL- 338 (351)
Q Consensus 266 ~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v~--~~~g~~~~~D~vi~a~G~~p~-~~- 338 (351)
.+|+++++.++++.+++++.+.+.+.+++.||+++.+. |++++. +.+. +.++ ++++|.||+|+|++|+ .+
T Consensus 212 --~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l 288 (479)
T PRK14727 212 --SRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDL 288 (479)
T ss_pred --CEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCC
Confidence 89999999878888899999999999999999999994 888753 3333 3344 6999999999999999 54
Q ss_pred -cccCCCCCCCCC
Q 018704 339 -VKSLDLPKSPGG 350 (351)
Q Consensus 339 -~~~~gl~~~~~G 350 (351)
++.+|++++++|
T Consensus 289 ~l~~~g~~~~~~G 301 (479)
T PRK14727 289 NLEAVGVTTDTSG 301 (479)
T ss_pred CchhhCceecCCC
Confidence 466688777666
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=218.64 Aligned_cols=240 Identities=18% Similarity=0.218 Sum_probs=164.3
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc----hhhh---------------hhh-cccccccccccchh-
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT----PLLA---------------STC-VGTLEFRSVAEPIA- 121 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~----~~~~---------------~~~-~~~~~~~~~~~~~~- 121 (351)
+||+||||||||++||.+|++.|.+|+|||+ +.+... ...+ ... .+. ........+.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~ 79 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGI-EVENVSVDWEK 79 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCC-CCCCCcCCHHH
Confidence 7999999999999999999999999999998 433111 0000 000 000 0000000000
Q ss_pred -------------ccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCC
Q 018704 122 -------------RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (351)
Q Consensus 122 -------------~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~ 188 (351)
.....+....++.++.+.+..++ .+.+.+....... .+.||+||||||+.|+.|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~--------~~~~d~lVlAtG~~p~~~~~~ 149 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLD--PGTVLVTGENGEE--------TLTAKNIIIATGSRPRSLPGP 149 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEecCCCcE--------EEEeCEEEEcCCCCCCCCCCC
Confidence 01112333456788888777665 4455554321113 799999999999999988776
Q ss_pred -CccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 018704 189 -GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (351)
Q Consensus 189 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~ 267 (351)
+.+.. .+.+..+...+ . ...++++|||||.+|+|+|..|.+++
T Consensus 150 ~~~~~~--~~~~~~~~~~~----------~----------~~~~~vvViGgG~~g~e~A~~l~~~g-------------- 193 (461)
T TIGR01350 150 FDFDGE--VVITSTGALNL----------K----------EVPESLVIIGGGVIGIEFASIFASLG-------------- 193 (461)
T ss_pred CCCCCc--eEEcchHHhcc----------c----------cCCCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 43211 12222222211 1 12259999999999999999998876
Q ss_pred cEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeEE--ecCC--cEEeccEEEEecCCCCc-c-
Q 018704 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLI--LNDG--TEVPYGLLVWSTGVGPS-T- 337 (351)
Q Consensus 268 ~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v~--~~~g--~~~~~D~vi~a~G~~p~-~- 337 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++. +++. +.+| +++++|.||+|+|.+|+ +
T Consensus 194 ~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~ 273 (461)
T TIGR01350 194 SKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEG 273 (461)
T ss_pred CcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCC
Confidence 899999997 47788889999999999999999999994 887753 4443 3466 47999999999999999 5
Q ss_pred -ccccCCCCCCCCC
Q 018704 338 -LVKSLDLPKSPGG 350 (351)
Q Consensus 338 -~~~~~gl~~~~~G 350 (351)
+++.++++++++|
T Consensus 274 l~~~~~gl~~~~~g 287 (461)
T TIGR01350 274 LGLENLGVELDERG 287 (461)
T ss_pred CCcHhhCceECCCC
Confidence 5777788777665
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=224.25 Aligned_cols=269 Identities=16% Similarity=0.172 Sum_probs=163.7
Q ss_pred cceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhh
Q 018704 28 NLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC 107 (351)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~ 107 (351)
....+.++++..+..... .............++|+|||||++||++|..|++.|++|+|||+.+...... .
T Consensus 103 ~v~i~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l-----~ 173 (449)
T TIGR01316 103 PVSIGALERFVADWERQH----GIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV-----T 173 (449)
T ss_pred CccHHHHHHHHHhHHHhc----CCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe-----e
Confidence 345666777766543211 1111111223456899999999999999999999999999999876532110 0
Q ss_pred cccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC-CcCCCC
Q 018704 108 VGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTFG 186 (351)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~p~~p~ 186 (351)
.+.+.+. +...+...........++.++...+. .+.+.+ . +. ...||+||||||+ .|+.|+
T Consensus 174 ~gip~~~-~~~~~~~~~~~~l~~~gv~~~~~~~v-----~~~v~~---~-~~--------~~~yd~viiAtGa~~p~~~~ 235 (449)
T TIGR01316 174 YGIPEFR-LPKEIVVTEIKTLKKLGVTFRMNFLV-----GKTATL---E-EL--------FSQYDAVFIGTGAGLPKLMN 235 (449)
T ss_pred ecCCCcc-CCHHHHHHHHHHHHhCCcEEEeCCcc-----CCcCCH---H-HH--------HhhCCEEEEeCCCCCCCcCC
Confidence 1111111 11111111112223446777665433 122222 1 11 3469999999998 699999
Q ss_pred CCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 187 IHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 187 i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
+||.+ .++++..++.....+. ...+.|... .....+++|+|||||++|+|+|..+.++|
T Consensus 236 ipG~~~~gv~~~~~~l~~~~~~-------~~~~~~~~~-~~~~~gk~VvVIGgG~~a~d~A~~l~~~G------------ 295 (449)
T TIGR01316 236 IPGEELCGVYSANDFLTRANLM-------KAYEFPHAD-TPVYAGKSVVVIGGGNTAVDSARTALRLG------------ 295 (449)
T ss_pred CCCCCCCCcEEHHHHHHHHhhc-------ccccccccC-CcccCCCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 99975 2333322222111110 011111000 00124579999999999999999999887
Q ss_pred CccEEEEEeCCCC--CCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---C---eEEec---------CC--------
Q 018704 266 DYIHVTLIEANEI--LSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---Q---KLILN---------DG-------- 319 (351)
Q Consensus 266 ~~~~v~~~~~~~~--l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~---~v~~~---------~g-------- 319 (351)
.+|+++++... ++.. ....+.+++.||+++++. ++++.. + +|.+. +|
T Consensus 296 --~~Vtlv~~~~~~~~~~~-----~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~ 368 (449)
T TIGR01316 296 --AEVHCLYRRTREDMTAR-----VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCG 368 (449)
T ss_pred --CEEEEEeecCcccCCCC-----HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecC
Confidence 78999998632 2221 223356788899999984 777753 1 23332 23
Q ss_pred ---cEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 320 ---TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 320 ---~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.++++|.||+|+|+.|+ .+++.+|++++++|
T Consensus 369 ~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G 403 (449)
T TIGR01316 369 DAECKLEADAVIVAIGNGSNPIMAETTRLKTSERG 403 (449)
T ss_pred CceEEEECCEEEECCCCCCCchhhhccCcccCCCC
Confidence 26899999999999999 78888888888766
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=219.47 Aligned_cols=240 Identities=22% Similarity=0.292 Sum_probs=163.5
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCcccc---c---h---hhhh----------hhcccccc-----cccccc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF---T---P---LLAS----------TCVGTLEF-----RSVAEP 119 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~---~---~---~~~~----------~~~~~~~~-----~~~~~~ 119 (351)
+|+||||||||++||.+|++.|.+|+|||++....- . | ++.. ...|.... .++..-
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 799999999999999999999999999998643210 0 0 0000 00111100 011100
Q ss_pred h----------hccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCC
Q 018704 120 I----------ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (351)
Q Consensus 120 ~----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g 189 (351)
. ..-...+....++.++.+++..++ .+.+.+.. +++. .++.||+||||||+.|+.|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~v~v~~-~~~~-------~~~~~d~lviATGs~p~~~p~~~ 151 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFET--DHRVRVEY-GDKE-------EVVDAEQFIIAAGSEPTELPFAP 151 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcc--CCEEEEee-CCCc-------EEEECCEEEEeCCCCCCCCCCCC
Confidence 0 011122334557888888887775 45555543 2221 27999999999999998887777
Q ss_pred cc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 018704 190 VK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (351)
Q Consensus 190 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~ 268 (351)
.+ ..+++. .++.. +...| ++++|||||++|+|+|..+.+++ .
T Consensus 152 ~~~~~v~~~---~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~l~~~g--------------~ 194 (458)
T PRK06912 152 FDGKWIINS---KHAMS----------LPSIP----------SSLLIVGGGVIGCEFASIYSRLG--------------T 194 (458)
T ss_pred CCCCeEEcc---hHHhC----------ccccC----------CcEEEECCCHHHHHHHHHHHHcC--------------C
Confidence 64 223322 12211 12223 49999999999999999998776 8
Q ss_pred EEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC--eEEec-CC--cEEeccEEEEecCCCCc-cc--
Q 018704 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--KLILN-DG--TEVPYGLLVWSTGVGPS-TL-- 338 (351)
Q Consensus 269 ~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~--~v~~~-~g--~~~~~D~vi~a~G~~p~-~~-- 338 (351)
+|+++++. .+++.+++++.+.+.+.+++.||+++++. |++++.+ .+.+. +| .++++|.||+|+|.+|+ ++
T Consensus 195 ~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~ 274 (458)
T PRK06912 195 KVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLN 274 (458)
T ss_pred eEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCC
Confidence 99999997 57788889999999999999999999995 8888653 34443 44 36899999999999999 43
Q ss_pred cccCCCCCCCCC
Q 018704 339 VKSLDLPKSPGG 350 (351)
Q Consensus 339 ~~~~gl~~~~~G 350 (351)
++..|++.+++|
T Consensus 275 l~~~gv~~~~~g 286 (458)
T PRK06912 275 LEKAGVQFSNKG 286 (458)
T ss_pred chhcCceecCCC
Confidence 355566655443
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-26 Score=217.46 Aligned_cols=243 Identities=21% Similarity=0.268 Sum_probs=157.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----------hh-----hhhhc-------cccc--ccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----------LL-----ASTCV-------GTLE--FRSVA 117 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----------~~-----~~~~~-------~~~~--~~~~~ 117 (351)
++||+||||||||++||.++++.|.+|+|||++..+...- ++ ..... |... ..++.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 4899999999999999999999999999999744322110 00 00000 0000 00010
Q ss_pred cch----------hccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 118 EPI----------ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 118 ~~~----------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
..+ ..-........++.++.+.. .++ +.+.+.+.. .+++ ..++.||+||||||+.|. .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~-~~~~v~v~~-~~g~------~~~~~~d~lVIATGs~p~--~i 151 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLD-GVGKVVVKA-EDGS------ETQLEAKDIVIATGSEPT--PL 151 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEc-cCCEEEEEc-CCCc------eEEEEeCEEEEeCCCCCC--CC
Confidence 000 01111222334577776654 232 234455432 2332 127999999999999885 35
Q ss_pred CCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 018704 188 HGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (351)
Q Consensus 188 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~ 266 (351)
||.+ +....+ +..++. .+... .++++|||||.+|+|+|..+.+++
T Consensus 152 pg~~~~~~~~~-~~~~~~----------~~~~~----------~~~vvIIGgG~ig~E~A~~l~~~G------------- 197 (466)
T PRK06115 152 PGVTIDNQRII-DSTGAL----------SLPEV----------PKHLVVIGAGVIGLELGSVWRRLG------------- 197 (466)
T ss_pred CCCCCCCCeEE-CHHHHh----------CCccC----------CCeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 6653 111111 111111 11122 359999999999999999999877
Q ss_pred ccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeE--Eec---C--CcEEeccEEEEecCCCC
Q 018704 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKL--ILN---D--GTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 267 ~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v--~~~---~--g~~~~~D~vi~a~G~~p 335 (351)
.+|+++++. ++++.+++++.+.+.+.+++.||+++++. |++++. +++ .+. + ++++++|.||+|+|++|
T Consensus 198 -~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 198 -AQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRP 276 (466)
T ss_pred -CeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcc
Confidence 899999986 57888999999999999999999999994 888874 343 332 2 35799999999999999
Q ss_pred c-cc--cccCCCCCCCCC
Q 018704 336 S-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 336 ~-~~--~~~~gl~~~~~G 350 (351)
+ .. ++..|++++++|
T Consensus 277 n~~~l~~~~~g~~~~~~G 294 (466)
T PRK06115 277 YTQGLGLETVGLETDKRG 294 (466)
T ss_pred ccccCCcccccceeCCCC
Confidence 9 53 455567666554
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=201.45 Aligned_cols=243 Identities=19% Similarity=0.237 Sum_probs=172.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCC---------------Cccccchhhhhhh-----ccccc----cccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR---------------NHMVFTPLLASTC-----VGTLE----FRSV 116 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~---------------~~~~~~~~~~~~~-----~~~~~----~~~~ 116 (351)
..+|.+|||||..|+++|++.+..|.++.|+|.. .-|+|...+.... .|++. .++|
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW 98 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDW 98 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcH
Confidence 4689999999999999999999999999999943 3333332221111 11111 1223
Q ss_pred ccchhccchhhhcCCC----------eEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 117 AEPIARIQPAISREPG----------SYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 117 ~~~~~~~~~~~~~~~~----------~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..-.+....++.+..+ +..+.+...-+++.+-.+.+ .++. +..+++.+++||||..|.+|+
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~---~d~~------~~~Ytak~iLIAtGg~p~~Pn 169 (478)
T KOG0405|consen 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEV---NDGT------KIVYTAKHILIATGGRPIIPN 169 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEe---cCCe------eEEEecceEEEEeCCccCCCC
Confidence 2223333333333333 33444444434443334433 2342 236999999999999999999
Q ss_pred CCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 018704 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (351)
Q Consensus 187 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~ 266 (351)
|||. +..+.++...+ +.+.| ||++|||+|++|+|+|..++.+|
T Consensus 170 IpG~-E~gidSDgff~-------------Lee~P----------kr~vvvGaGYIavE~Agi~~gLg------------- 212 (478)
T KOG0405|consen 170 IPGA-ELGIDSDGFFD-------------LEEQP----------KRVVVVGAGYIAVEFAGIFAGLG------------- 212 (478)
T ss_pred CCch-hhccccccccc-------------hhhcC----------ceEEEEccceEEEEhhhHHhhcC-------------
Confidence 9998 66676665543 33444 39999999999999999999998
Q ss_pred ccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEEEEecCCCCc---
Q 018704 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPS--- 336 (351)
Q Consensus 267 ~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p~--- 336 (351)
.+++++.|. ..|+.||+.+...+.++++..||++|.++ ++++.. + .+....|....+|.++||+|+.|+
T Consensus 213 -sethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 213 -SETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred -CeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCccc
Confidence 999999997 58999999999999999999999999995 777754 2 334455654559999999999999
Q ss_pred cccccCCCCCCCCC
Q 018704 337 TLVKSLDLPKSPGG 350 (351)
Q Consensus 337 ~~~~~~gl~~~~~G 350 (351)
--++..|+++|+.|
T Consensus 292 L~le~vGVk~~~~g 305 (478)
T KOG0405|consen 292 LNLENVGVKTDKNG 305 (478)
T ss_pred ccchhcceeeCCCC
Confidence 23456678888776
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=219.60 Aligned_cols=231 Identities=24% Similarity=0.288 Sum_probs=157.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc-------hh---hh------h----hhcccc------ccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------PL---LA------S----TCVGTL------EFR 114 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~-------~~---~~------~----~~~~~~------~~~ 114 (351)
..+||+||||||||++||.+|++.|.+|+|||+.. +... |. +. . ...|.. ++.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 35899999999999999999999999999999853 2111 00 00 0 000100 110
Q ss_pred ccccc-------hhccchhhhcCCCeEEEEEEeeeEeCC-----CCEEEEEeecCccccCCCceeEeeccEEEEecCCCc
Q 018704 115 SVAEP-------IARIQPAISREPGSYFFLSHCAGIDTD-----NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (351)
Q Consensus 115 ~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p 182 (351)
.+... +......+....++.++.+.+..++.. .+.+.+.. .++. ...+.||+||||||+.|
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~-~~g~------~~~~~~d~lViATGs~p 154 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVET-ETGE------NEMIIPENLLIATGSRP 154 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEe-CCCc------eEEEEcCEEEEeCCCCC
Confidence 00000 111112233456899999999988876 33565543 2331 12799999999999998
Q ss_pred CCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhh
Q 018704 183 STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261 (351)
Q Consensus 183 ~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~ 261 (351)
..++....+ ..+++ ..++.. +...| ++++|||||++|+|+|..|.+++
T Consensus 155 ~~~p~~~~~~~~~~~---~~~~~~----------~~~~~----------~~vvIIGgG~~G~E~A~~l~~~g-------- 203 (472)
T PRK05976 155 VELPGLPFDGEYVIS---SDEALS----------LETLP----------KSLVIVGGGVIGLEWASMLADFG-------- 203 (472)
T ss_pred CCCCCCCCCCceEEc---chHhhC----------ccccC----------CEEEEECCCHHHHHHHHHHHHcC--------
Confidence 754222111 11222 222211 11122 49999999999999999999877
Q ss_pred cCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEe---CCeE---EecCCc--EEeccEEEEec
Q 018704 262 SHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD---SQKL---ILNDGT--EVPYGLLVWST 331 (351)
Q Consensus 262 ~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~---~~~v---~~~~g~--~~~~D~vi~a~ 331 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++ .+++ .+.+|+ ++++|.||+|+
T Consensus 204 ------~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 204 ------VEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSV 277 (472)
T ss_pred ------CeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEee
Confidence 899999997 57788899999999999999999999995 88886 3433 234663 69999999999
Q ss_pred CCCCc
Q 018704 332 GVGPS 336 (351)
Q Consensus 332 G~~p~ 336 (351)
|.+|+
T Consensus 278 G~~p~ 282 (472)
T PRK05976 278 GRRPN 282 (472)
T ss_pred CCccC
Confidence 99999
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=221.77 Aligned_cols=240 Identities=17% Similarity=0.200 Sum_probs=158.1
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcccc--chhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF--TPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
...+||+|||||||||+||.+|++.|++|+|||..-.... ...+... .+.+. ... ..+.+.........++.++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~-~~~~~-~~~-~~l~~~l~~~l~~~gv~i~~ 286 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENL-ISVPY-TTG-SQLAANLEEHIKQYPIDLME 286 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccc-cccCC-CCH-HHHHHHHHHHHHHhCCeEEc
Confidence 4468999999999999999999999999999975311000 0001100 01110 111 11122222222334666654
Q ss_pred -EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhc
Q 018704 138 -SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 138 -~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
.+|+.++.+.+.+.+.. .++. .+.||+||+|||+.|+.|++||..+.. ...+.....+.+.+
T Consensus 287 ~~~V~~I~~~~~~~~v~~-~~g~--------~i~~d~lIlAtGa~~~~~~ipG~~~~~--~~~v~~~~~~~~~~------ 349 (515)
T TIGR03140 287 NQRAKKIETEDGLIVVTL-ESGE--------VLKAKSVIVATGARWRKLGVPGEKEYI--GKGVAYCPHCDGPF------ 349 (515)
T ss_pred CCEEEEEEecCCeEEEEE-CCCC--------EEEeCEEEECCCCCcCCCCCCCHHHcC--CCeEEEeeccChhh------
Confidence 58888987776666543 4555 799999999999999999999863211 11110000000111
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~ 296 (351)
..+++|+|||||++|+|+|..|..++ .+|+++++.+.+. ....+.+.+++
T Consensus 350 -----------~~~k~VvViGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~l~-----~~~~l~~~l~~ 399 (515)
T TIGR03140 350 -----------FKGKDVAVIGGGNSGIEAAIDLAGIV--------------RHVTVLEFADELK-----ADKVLQDKLKS 399 (515)
T ss_pred -----------cCCCEEEEECCcHHHHHHHHHHHhcC--------------cEEEEEEeCCcCC-----hhHHHHHHHhc
Confidence 23469999999999999999998876 8999999865332 12345666665
Q ss_pred -cCcEEEcCe-EEEEeCC-----eEEecC---C--cEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 297 -SGVRLVRGI-VKDVDSQ-----KLILND---G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 297 -~gV~~~~~~-v~~v~~~-----~v~~~~---g--~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.||+++.+. ++++.++ +|.+.+ | +++++|.||+|+|++|+ ++++.+ ++++++|
T Consensus 400 ~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G 465 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRG 465 (515)
T ss_pred CCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCC
Confidence 699999995 8888764 366643 2 46899999999999999 788765 7766655
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=219.60 Aligned_cols=243 Identities=19% Similarity=0.231 Sum_probs=162.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcC------CCccccc-------hh---hh------hh-----hcccccc-
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP------RNHMVFT-------PL---LA------ST-----CVGTLEF- 113 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~------~~~~~~~-------~~---~~------~~-----~~~~~~~- 113 (351)
.+||+||||||||++||.++++.|.+|+|||+ ...+... |. +. .. ..|....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~ 83 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG 83 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence 58999999999999999999999999999998 1111110 10 00 00 0010000
Q ss_pred --ccccc----------chhccchhhhcCCCeEEEEEEeeeEeCC--CCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 114 --RSVAE----------PIARIQPAISREPGSYFFLSHCAGIDTD--NHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 114 --~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
.++.. .+......+....++.++.+.+..++.. .+.+.+.. .++. .+.||+||||||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~-~~~~--------~~~~d~lViATG 154 (475)
T PRK06327 84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTG-EDET--------VITAKHVIIATG 154 (475)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEec-CCCe--------EEEeCEEEEeCC
Confidence 00000 0111122334456788888888877744 34454421 2233 799999999999
Q ss_pred CCcCCCC-CCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHH
Q 018704 180 AEASTFG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (351)
Q Consensus 180 ~~p~~p~-i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~ 258 (351)
+.|+.++ ++......+.. .+... +... .++++|||+|++|+|+|..+.+++
T Consensus 155 s~p~~~p~~~~~~~~~~~~---~~~~~----------~~~~----------~~~vvVvGgG~~g~E~A~~l~~~g----- 206 (475)
T PRK06327 155 SEPRHLPGVPFDNKIILDN---TGALN----------FTEV----------PKKLAVIGAGVIGLELGSVWRRLG----- 206 (475)
T ss_pred CCCCCCCCCCCCCceEECc---HHHhc----------cccc----------CCeEEEECCCHHHHHHHHHHHHcC-----
Confidence 9987543 32211112221 11111 1112 259999999999999999998877
Q ss_pred hhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeCC--e--EEecC--C--cEEeccEEE
Q 018704 259 QRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILND--G--TEVPYGLLV 328 (351)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~~--~--v~~~~--g--~~~~~D~vi 328 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+ +|++++.+ + +.+.+ | .++++|.|+
T Consensus 207 ---------~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl 277 (475)
T PRK06327 207 ---------AEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLI 277 (475)
T ss_pred ---------CeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEE
Confidence 899999997 4677788999999999999999999999 49888643 3 34444 3 469999999
Q ss_pred EecCCCCc-c--ccccCCCCCCCCC
Q 018704 329 WSTGVGPS-T--LVKSLDLPKSPGG 350 (351)
Q Consensus 329 ~a~G~~p~-~--~~~~~gl~~~~~G 350 (351)
+|+|++|+ + .++.+|++++++|
T Consensus 278 ~a~G~~p~~~~l~~~~~g~~~~~~G 302 (475)
T PRK06327 278 VSIGRVPNTDGLGLEAVGLKLDERG 302 (475)
T ss_pred EccCCccCCCCCCcHhhCceeCCCC
Confidence 99999999 5 3456778777665
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-27 Score=222.38 Aligned_cols=271 Identities=17% Similarity=0.188 Sum_probs=163.0
Q ss_pred CcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhh
Q 018704 27 SNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST 106 (351)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~ 106 (351)
.++....++++..+.+.... +.. ..+.....++|+|||||||||+||.+|++.|++|+|+|+.+......
T Consensus 110 ~~v~I~~l~r~~~~~~~~~~----~~~-~~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l----- 179 (464)
T PRK12831 110 EPVAIGKLERFVADWARENG----IDL-SETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVL----- 179 (464)
T ss_pred CCeehhHHHHHHHHHHHHcC----CCC-CCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCee-----
Confidence 34556677777766433211 111 12223456899999999999999999999999999999876532110
Q ss_pred hcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC-CcCCC
Q 018704 107 CVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTF 185 (351)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~p~~p 185 (351)
..+.+.+......+...........++.++.....+ +.+.+ ++.. ..+.||+||||||+ .|+.+
T Consensus 180 ~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~-----~~v~~---~~~~-------~~~~~d~viiAtGa~~~~~l 244 (464)
T PRK12831 180 VYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVG-----KTVTI---DELL-------EEEGFDAVFIGSGAGLPKFM 244 (464)
T ss_pred eecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEEC-----CcCCH---HHHH-------hccCCCEEEEeCCCCCCCCC
Confidence 012222211111122211122333467766554331 12211 1111 14579999999998 59999
Q ss_pred CCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 186 GIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 186 ~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
++||.+ +++++..++.....+... +. +.. ......+++|+|||||++|+|+|..+.++|
T Consensus 245 ~ipG~~~~gV~~~~~~l~~~~~~~~------~~--~~~-~~~~~~gk~VvVIGgG~va~d~A~~l~r~G----------- 304 (464)
T PRK12831 245 GIPGENLNGVFSANEFLTRVNLMKA------YK--PEY-DTPIKVGKKVAVVGGGNVAMDAARTALRLG----------- 304 (464)
T ss_pred CCCCcCCcCcEEHHHHHHHHHhccc------cc--ccc-cCcccCCCeEEEECCcHHHHHHHHHHHHcC-----------
Confidence 999975 344443332222111100 00 000 001134579999999999999999999988
Q ss_pred CCccEEEEEeCCC--CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C----eEEec------------------
Q 018704 265 KDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q----KLILN------------------ 317 (351)
Q Consensus 265 ~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~----~v~~~------------------ 317 (351)
.+|+++++.. .++....++ +.+++.||+++++. ++++.. + +|.+.
T Consensus 305 ---a~Vtlv~r~~~~~m~a~~~e~-----~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~ 376 (464)
T PRK12831 305 ---AEVHIVYRRSEEELPARVEEV-----HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEI 376 (464)
T ss_pred ---CEEEEEeecCcccCCCCHHHH-----HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceec
Confidence 7899999863 333322221 34567899999984 777642 1 13221
Q ss_pred CCc--EEeccEEEEecCCCCc-ccccc-CCCCCCCCC
Q 018704 318 DGT--EVPYGLLVWSTGVGPS-TLVKS-LDLPKSPGG 350 (351)
Q Consensus 318 ~g~--~~~~D~vi~a~G~~p~-~~~~~-~gl~~~~~G 350 (351)
+|+ ++++|.||+|+|+.|+ .++.. .|++++++|
T Consensus 377 ~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G 413 (464)
T PRK12831 377 EGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRG 413 (464)
T ss_pred CCceEEEECCEEEECCCCCCChhhhcccCCceECCCC
Confidence 222 5899999999999999 66665 678777665
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-26 Score=217.78 Aligned_cols=241 Identities=21% Similarity=0.286 Sum_probs=156.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc------cch---hhhh-----hh------ccccc--ccccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV------FTP---LLAS-----TC------VGTLE--FRSVAEP 119 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~------~~~---~~~~-----~~------~~~~~--~~~~~~~ 119 (351)
.+||+||||||||++||.+|++.|.+|+|||++.... ..| ++.. .. .+... ..++...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 83 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGAA 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHHH
Confidence 4899999999999999999999999999999852110 001 0000 00 00000 0000000
Q ss_pred hhc----------cchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCC
Q 018704 120 IAR----------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (351)
Q Consensus 120 ~~~----------~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g 189 (351)
..+ -...+....++..+.+...- .+.+.+.+.. .+++ ..++.||+||||||+.|+.| ||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~--~~~~~v~v~~-~~g~------~~~~~~d~lViATGs~p~~~--pg 152 (466)
T PRK07818 84 FDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTF--TDANTLEVDL-NDGG------TETVTFDNAIIATGSSTRLL--PG 152 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE--cCCCEEEEEe-cCCC------eeEEEcCEEEEeCCCCCCCC--CC
Confidence 000 00011112244444443222 3456666643 2221 12799999999999998764 55
Q ss_pred cc--ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 018704 190 VK--ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (351)
Q Consensus 190 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~ 267 (351)
.+ ..++++ .+. +.....| ++++|||||.+|+|+|..+.+++
T Consensus 153 ~~~~~~v~~~---~~~----------~~~~~~~----------~~vvVIGgG~ig~E~A~~l~~~G-------------- 195 (466)
T PRK07818 153 TSLSENVVTY---EEQ----------ILSRELP----------KSIVIAGAGAIGMEFAYVLKNYG-------------- 195 (466)
T ss_pred CCCCCcEEch---HHH----------hccccCC----------CeEEEECCcHHHHHHHHHHHHcC--------------
Confidence 43 222221 111 0111122 49999999999999999999887
Q ss_pred cEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC--e--EEec--CC--cEEeccEEEEecCCCCc-
Q 018704 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVGPS- 336 (351)
Q Consensus 268 ~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~--~--v~~~--~g--~~~~~D~vi~a~G~~p~- 336 (351)
.+|+++++. ++++.+++++.+.+.+.+++.||+++.+. |++++.+ . +.+. +| +++++|.||+|+|++|+
T Consensus 196 ~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 196 VDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred CeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 899999986 57888899999999999999999999994 8888653 2 3443 66 36999999999999999
Q ss_pred cc--cccCCCCCCCCC
Q 018704 337 TL--VKSLDLPKSPGG 350 (351)
Q Consensus 337 ~~--~~~~gl~~~~~G 350 (351)
++ ++..|++++++|
T Consensus 276 ~~l~l~~~g~~~~~~g 291 (466)
T PRK07818 276 EGYGLEKTGVALTDRG 291 (466)
T ss_pred CCCCchhcCcEECCCC
Confidence 53 567777776665
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-26 Score=217.54 Aligned_cols=238 Identities=24% Similarity=0.291 Sum_probs=158.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchh----------hh---------hh-hccc------cccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----------LA---------ST-CVGT------LEFR 114 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~----------~~---------~~-~~~~------~~~~ 114 (351)
.++||+||||||+|++||.+|++.|.+|+|||++ .+..... +. .. ..+. ..+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 80 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG-PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK 80 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence 3589999999999999999999999999999984 3211100 00 00 0010 0111
Q ss_pred ccccchhccc--------hhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 115 SVAEPIARIQ--------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 115 ~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
.+........ .......++.++.+.+..++. +.+.+ ++. ++.||+||||||+. .|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~v~v----~~~--------~~~~d~lIiATGs~--~p~ 144 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP--NTVEV----NGE--------RIEAKNIVIATGSR--VPP 144 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccC--CEEEE----CcE--------EEEeCEEEEeCCCC--CCC
Confidence 1111111111 111233456677666655543 34443 333 79999999999998 556
Q ss_pred CCCccc-cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 187 IHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 187 i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
+||... ....+.+..+...+ . ...++++|||+|++|+|+|..|.+++
T Consensus 145 ipg~~~~~~~~~~~~~~~~~~----------~----------~~~k~v~VIGgG~~g~E~A~~l~~~g------------ 192 (460)
T PRK06292 145 IPGVWLILGDRLLTSDDAFEL----------D----------KLPKSLAVIGGGVIGLELGQALSRLG------------ 192 (460)
T ss_pred CCCCcccCCCcEECchHHhCc----------c----------ccCCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 666521 11111122222111 1 12259999999999999999999887
Q ss_pred CccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC---eEEe--cCC--cEEeccEEEEecCCCCc
Q 018704 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ---KLIL--NDG--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 266 ~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~---~v~~--~~g--~~~~~D~vi~a~G~~p~ 336 (351)
.+|+++++. .+++.+++++.+.+.+.+++. |+++++. |++++.+ .+.+ .++ .++++|.|++|+|++|+
T Consensus 193 --~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 193 --VKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPN 269 (460)
T ss_pred --CcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccC
Confidence 899999997 477888999999999999999 9999994 8888643 3553 233 46999999999999999
Q ss_pred -c--ccccCCCCCCCCC
Q 018704 337 -T--LVKSLDLPKSPGG 350 (351)
Q Consensus 337 -~--~~~~~gl~~~~~G 350 (351)
+ .++.+|++++++|
T Consensus 270 ~~~l~l~~~g~~~~~~g 286 (460)
T PRK06292 270 TDGLGLENTGIELDERG 286 (460)
T ss_pred CCCCCcHhhCCEecCCC
Confidence 5 3567788777665
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=201.52 Aligned_cols=239 Identities=22% Similarity=0.370 Sum_probs=188.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCccccch-hhhhhhcccccccccccchhccchhhhcCCCeEE-EE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYF-FL 137 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 137 (351)
..+++|||+|++|..|+..+++.|+ +++++-+..+++|.+ .++.... .....+....+.+....++.+ +.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~------~~~~~~a~r~~e~Yke~gIe~~~~ 147 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLL------TVGEGLAKRTPEFYKEKGIELILG 147 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhccccee------eccccccccChhhHhhcCceEEEc
Confidence 5799999999999999999999776 588887777777653 2222221 111222222233344445554 55
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhc
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
..|+++|...+++.+ ++|+ ++.|++++||||+.+++|++||.+ +++..+++++++..+...+
T Consensus 148 t~v~~~D~~~K~l~~---~~Ge--------~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~------ 210 (478)
T KOG1336|consen 148 TSVVKADLASKTLVL---GNGE--------TLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAI------ 210 (478)
T ss_pred ceeEEeeccccEEEe---CCCc--------eeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHh------
Confidence 699999999999987 5677 999999999999999999999997 7788889999888877665
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHHHHh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQL 294 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~l 294 (351)
...++|+|+|+|.+|+|+|..|.... .+||++++.. .++ -+.+.+.+.+++++
T Consensus 211 -----------~~~~~vV~vG~G~ig~Evaa~l~~~~--------------~~VT~V~~e~~~~~~lf~~~i~~~~~~y~ 265 (478)
T KOG1336|consen 211 -----------QLGGKVVCVGGGFIGMEVAAALVSKA--------------KSVTVVFPEPWLLPRLFGPSIGQFYEDYY 265 (478)
T ss_pred -----------ccCceEEEECchHHHHHHHHHHHhcC--------------ceEEEEccCccchhhhhhHHHHHHHHHHH
Confidence 23458999999999999999998754 8999999974 333 57789999999999
Q ss_pred hhcCcEEEcCe-EEEEeCC------eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCC
Q 018704 295 SKSGVRLVRGI-VKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPG 349 (351)
Q Consensus 295 ~~~gV~~~~~~-v~~v~~~------~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~ 349 (351)
+++||+++.++ +.+++.+ .|.+.||++++||.||+.+|.+|+ ++++. |.-.++.
T Consensus 266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~ 327 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK-GILLDSK 327 (478)
T ss_pred HhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc-cceeccc
Confidence 99999999997 8888653 578899999999999999999999 77774 4333433
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=210.96 Aligned_cols=236 Identities=19% Similarity=0.315 Sum_probs=179.2
Q ss_pred HHHHhhhcc--CceEEEEcCCCccccchh-hhhhhcccccccccccchhccchhhhcCCCeEEE-EEEeeeEeCCCCEEE
Q 018704 76 RLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHCAGIDTDNHVVH 151 (351)
Q Consensus 76 ~aA~~L~~~--g~~v~vie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~v~ 151 (351)
+||.+|++. +.+|+|||+++.+.|.+. ++....+...... ..+......+....++.++ ..+|+.++++.+.+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~ 78 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRN--KLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV 78 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHH--HcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE
Confidence 478888875 578999999999887763 4443333222110 1111111223334467764 679999999999988
Q ss_pred EEeecCccccCCCceeEee--ccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhc
Q 018704 152 CETVTDELRTLEPWKFKIS--YDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 228 (351)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~--~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 228 (351)
+....++. .+. ||+||||||+.|+.|++||++ +.++...++.++..+++.+.. .
T Consensus 79 ~~~~~~~~--------~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~---------------~ 135 (427)
T TIGR03385 79 VRNNKTNE--------TYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDK---------------N 135 (427)
T ss_pred EEECCCCC--------EEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh---------------c
Confidence 86433333 566 999999999999999999986 567777888888777766421 2
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-C-CCCCcHHHHHHHHHHhhhcCcEEEcCe-
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-LSSFDDRLRHYATTQLSKSGVRLVRGI- 305 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-l~~~~~~~~~~~~~~l~~~gV~~~~~~- 305 (351)
..++|+|||||++|+|+|..|.+.+ .+|+++++.. + .+.+++++.+.+.+.+++.||+++.+.
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~ 201 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERG--------------KNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEE 201 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCE
Confidence 3469999999999999999998776 7899999974 4 466888889999999999999999994
Q ss_pred EEEEeCCe--EEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 306 VKDVDSQK--LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 306 v~~v~~~~--v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
|++++.++ +.+.+|+++++|.||+|+|++|+ ++++.+|++++++|
T Consensus 202 v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G 249 (427)
T TIGR03385 202 VDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETG 249 (427)
T ss_pred EEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCC
Confidence 99987643 36778889999999999999999 89999899887766
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=217.13 Aligned_cols=236 Identities=17% Similarity=0.205 Sum_probs=157.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc--hhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
...+||+|||||||||+||.+|++.|++|+||++.....+. ..+... .+. ..... ..+...........++.++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~-~~~-~~~~~-~~l~~~l~~~~~~~gv~i~~ 285 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENF-ISV-PETEG-PKLAAALEEHVKEYDVDIMN 285 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCccccc-CCC-CCCCH-HHHHHHHHHHHHHCCCEEEc
Confidence 34689999999999999999999999999999864111110 001000 000 01111 11222222223333566554
Q ss_pred -EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcccc----ccccCCHHHHHHHHHHHHH
Q 018704 138 -SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN----ATFLREVHHAQEIRRKLLL 212 (351)
Q Consensus 138 -~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~----~~~~~~~~~~~~~~~~~~~ 212 (351)
.+|+.++.....+.+.. .++. .+.||.||+|||+.|+.|++||.++. +...... .+..
T Consensus 286 ~~~V~~I~~~~~~~~V~~-~~g~--------~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~------~~~~-- 348 (517)
T PRK15317 286 LQRASKLEPAAGLIEVEL-ANGA--------VLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHC------DGPL-- 348 (517)
T ss_pred CCEEEEEEecCCeEEEEE-CCCC--------EEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeecc------Cchh--
Confidence 58999988766666543 4555 79999999999999999999986421 1111110 0100
Q ss_pred hhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHH
Q 018704 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292 (351)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~ 292 (351)
.++++|+|||||++|+|+|..|..++ .+|+++++++.+.. .+.+.+
T Consensus 349 ---------------~~gk~VvVVGgG~~g~e~A~~L~~~~--------------~~Vtlv~~~~~l~~-----~~~l~~ 394 (517)
T PRK15317 349 ---------------FKGKRVAVIGGGNSGVEAAIDLAGIV--------------KHVTVLEFAPELKA-----DQVLQD 394 (517)
T ss_pred ---------------cCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEECccccc-----cHHHHH
Confidence 24469999999999999999999876 89999998754321 133445
Q ss_pred Hhhh-cCcEEEcCe-EEEEeCC-----eEEec---CC--cEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 293 QLSK-SGVRLVRGI-VKDVDSQ-----KLILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 293 ~l~~-~gV~~~~~~-v~~v~~~-----~v~~~---~g--~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.+.+ .||+++.+. +.++.++ .+.+. +| +++++|.|++++|++|+ +|++.. ++++++|
T Consensus 395 ~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g 464 (517)
T PRK15317 395 KLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRG 464 (517)
T ss_pred HHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCC
Confidence 5554 699999995 8888765 35554 33 35899999999999999 788765 6666655
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=219.40 Aligned_cols=240 Identities=17% Similarity=0.175 Sum_probs=154.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhccccccccc-ccchhccchhhhcCCCeEEEEEEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSV-AEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
.+||+|||||||||+||.+|++.|++|+|||++......... ......+..... ...+.+.........++.++..+|
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~-~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~V 82 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITIT-SEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAEV 82 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEec-cccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccEE
Confidence 489999999999999999999999999999986532111100 000011111100 011222222233344677888899
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (351)
+.++.+.+.+.+.+ .++ .+.|++||||||+.|+.|++||.+.. ....+..+..+.+..
T Consensus 83 ~~i~~~~~~~~V~~-~~g---------~~~a~~lVlATGa~p~~~~ipG~~~~--~~~~v~~~~~~~~~~---------- 140 (555)
T TIGR03143 83 LDVDFDGDIKTIKT-ARG---------DYKTLAVLIATGASPRKLGFPGEEEF--TGRGVAYCATCDGEF---------- 140 (555)
T ss_pred EEEEecCCEEEEEe-cCC---------EEEEeEEEECCCCccCCCCCCCHHHh--CCceEEEEeecChhh----------
Confidence 99998776555543 223 68899999999999999999996421 111110000000111
Q ss_pred CCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcE
Q 018704 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300 (351)
Q Consensus 221 ~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~ 300 (351)
..+++++|||||++|+|+|..|.+++ .+|+++++.+.+. ..... ..+.+++.||+
T Consensus 141 -------~~g~~VvVIGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~~~-~~~~~---~~~~~~~~gV~ 195 (555)
T TIGR03143 141 -------FTGMDVFVIGGGFAAAEEAVFLTRYA--------------SKVTVIVREPDFT-CAKLI---AEKVKNHPKIE 195 (555)
T ss_pred -------cCCCEEEEECCCHHHHHHHHHHHccC--------------CEEEEEEeCCccc-cCHHH---HHHHHhCCCcE
Confidence 23469999999999999999998876 8999999975321 12222 22334456999
Q ss_pred EEcCe-EEEEeCC-e---EEe---cCCcEE----eccE----EEEecCCCCc-cccccCCCCCCCCC
Q 018704 301 LVRGI-VKDVDSQ-K---LIL---NDGTEV----PYGL----LVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 301 ~~~~~-v~~v~~~-~---v~~---~~g~~~----~~D~----vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
++++. |+++.++ . +.+ .+|++. ++|. ||+|+|++|+ .+++. +++++++|
T Consensus 196 i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G 261 (555)
T TIGR03143 196 VKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRG 261 (555)
T ss_pred EEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCC
Confidence 99995 9998764 2 222 356543 3676 9999999999 66654 56776655
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-25 Score=222.35 Aligned_cols=276 Identities=16% Similarity=0.181 Sum_probs=166.6
Q ss_pred cccccCCCCCCCCCcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcC
Q 018704 14 KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
.|+..+.+... -.++....+.+++.+...... ...+ ..+......++|+|||||||||+||+.|++.|++|+|+|+
T Consensus 495 ~Ce~~C~R~~~-d~pV~I~~Lkr~a~d~~~~~~-~~~~--~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek 570 (1019)
T PRK09853 495 QCQYNCTRLDY-DEAVNIRELKKVALEKGWDEY-KQRW--HKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFER 570 (1019)
T ss_pred hhHHHhcCCCC-CCCeeccHHHHHHHhhHHHhc-cccc--CCCCccCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 45555554432 245566777777765432110 0011 0111224568999999999999999999999999999998
Q ss_pred CCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccE
Q 018704 94 RNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDK 173 (351)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~ 173 (351)
.+..... +. .+.+.+......+...... ....++.+..+....+ .+ .+.. ...||+
T Consensus 571 ~~~~GG~--lr---~~IP~~Rlp~evL~~die~-l~~~GVe~~~gt~Vdi-------~l---e~L~--------~~gYDa 626 (1019)
T PRK09853 571 EENAGGV--VK---NIIPQFRIPAELIQHDIEF-VKAHGVKFEFGCSPDL-------TV---EQLK--------NEGYDY 626 (1019)
T ss_pred ccccCcc--ee---eecccccccHHHHHHHHHH-HHHcCCEEEeCceeEE-------Eh---hhhe--------eccCCE
Confidence 8764211 10 1122222111122222222 2334677765533211 11 1122 567999
Q ss_pred EEEecCCC-cCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHH
Q 018704 174 LVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF 252 (351)
Q Consensus 174 lviAtG~~-p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~ 252 (351)
||||||+. ++.+++||.+++++. .++....+.+. .. ....+++|+|||||++|+|+|..+.++
T Consensus 627 VILATGA~~~~~l~IpG~~~gV~s--aldfL~~~k~~-------~~-------~~~~GKrVVVIGGGnVAmD~Ar~a~Rl 690 (1019)
T PRK09853 627 VVVAIGADKNGGLKLEGGNQNVIK--ALPFLEEYKNK-------GT-------ALKLGKHVVVVGGGNTAMDAARAALRV 690 (1019)
T ss_pred EEECcCCCCCCCCCCCCccCCcee--hHHHHHHHhhh-------cc-------cccCCCEEEEECCChHHHHHHHHHHhc
Confidence 99999997 566688886543332 12222211110 00 013457999999999999999988776
Q ss_pred HHHHHHhhhcCCCCccEEEEEeCC--CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC-CeEE-------------
Q 018704 253 IMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-QKLI------------- 315 (351)
Q Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~~--~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~-~~v~------------- 315 (351)
+. ..+|++++|+ ..++..+.++.. . .+.||+++.+. +.++.. +.+.
T Consensus 691 gG------------akeVTLVyRr~~~~MPA~~eEle~----A-leeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~G 753 (1019)
T PRK09853 691 PG------------VEKVTVVYRRTKQEMPAWREEYEE----A-LEDGVEFKELLNPESFDADGTLTCRVMKLGEPDESG 753 (1019)
T ss_pred CC------------CceEEEEEccCcccccccHHHHHH----H-HHcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCC
Confidence 30 1489999996 355655444322 2 34699999884 666652 2221
Q ss_pred ------ecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 316 ------LNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 316 ------~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
..++.++++|.||+|+|+.|+ ++++..|++++++|
T Consensus 754 r~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G 795 (1019)
T PRK09853 754 RRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKG 795 (1019)
T ss_pred ceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCC
Confidence 123357999999999999999 88888888877766
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=206.90 Aligned_cols=237 Identities=18% Similarity=0.232 Sum_probs=155.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc----cc-----hhh-----hhh-----hccc------cccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV----FT-----PLL-----AST-----CVGT------LEFRSV 116 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~----~~-----~~~-----~~~-----~~~~------~~~~~~ 116 (351)
++||+|||+||+|+.||..+ .|.+|+|||++.... +. .++ ... ..|. .++..+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 79 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI 79 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHH
Confidence 48999999999999987554 699999999753110 00 000 000 0011 011111
Q ss_pred ccchhc-cc-------hhh-h--cCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 117 AEPIAR-IQ-------PAI-S--REPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 117 ~~~~~~-~~-------~~~-~--~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
...... .. ..+ . +..++.++.+...-. +.+.+.+ .++. ++.||+||||||+.|..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~V~~---~~g~--------~~~~d~lIiATGs~p~~p 146 (452)
T TIGR03452 80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV--GPRTLRT---GDGE--------EITGDQIVIAAGSRPYIP 146 (452)
T ss_pred HHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe--cCCEEEE---CCCc--------EEEeCEEEEEECCCCCCC
Confidence 111100 00 011 1 124677776654434 4556655 2444 799999999999999888
Q ss_pred CCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 186 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
++++.. . ..+.+..++..+.. . .++++|||||++|+|+|..|.+++
T Consensus 147 ~~~~~~-~-~~~~~~~~~~~l~~----------~----------~k~vvVIGgG~ig~E~A~~l~~~G------------ 192 (452)
T TIGR03452 147 PAIADS-G-VRYHTNEDIMRLPE----------L----------PESLVIVGGGYIAAEFAHVFSALG------------ 192 (452)
T ss_pred CCCCCC-C-CEEEcHHHHHhhhh----------c----------CCcEEEECCCHHHHHHHHHHHhCC------------
Confidence 654421 1 22334444433321 1 249999999999999999998877
Q ss_pred CccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeC--Ce--EEecCCcEEeccEEEEecCCCCc-cc
Q 018704 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS-TL 338 (351)
Q Consensus 266 ~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~--v~~~~g~~~~~D~vi~a~G~~p~-~~ 338 (351)
.+|+++++. .+++.+++++.+.+.+.+ +.+|+++++ +|++++. ++ +.+.+|+++++|.|++|+|++|+ ++
T Consensus 193 --~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 193 --TRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred --CcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 899999997 467778888888877655 468999999 4888863 33 45567888999999999999999 66
Q ss_pred --cccCCCCCCCCC
Q 018704 339 --VKSLDLPKSPGG 350 (351)
Q Consensus 339 --~~~~gl~~~~~G 350 (351)
++.+|++++++|
T Consensus 270 l~~~~~gl~~~~~G 283 (452)
T TIGR03452 270 LDAEAAGVEVDEDG 283 (452)
T ss_pred cCchhcCeeECCCC
Confidence 356678877665
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-25 Score=223.28 Aligned_cols=242 Identities=18% Similarity=0.193 Sum_probs=152.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEe
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
..++|+|||||||||+||.+|++.|++|+|||+.+..... ...|.+.+.. ...+.+.........++.|....+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~-----l~yGIP~~rl-p~~vi~~~i~~l~~~Gv~f~~n~~ 378 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV-----LRYGIPEFRL-PNQLIDDVVEKIKLLGGRFVKNFV 378 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce-----EEccCCCCcC-hHHHHHHHHHHHHhhcCeEEEeEE
Confidence 4689999999999999999999999999999997653211 1124444432 222222222233445888877655
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
.+ +.+.+. +.. ...||+||||||+. |+.+++||.+ +++++..++.......... .....
T Consensus 379 vG-----~dit~~---~l~--------~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~---~~~~~ 439 (944)
T PRK12779 379 VG-----KTATLE---DLK--------AAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGL---DDDYE 439 (944)
T ss_pred ec-----cEEeHH---Hhc--------cccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccc---ccccc
Confidence 43 333332 222 45799999999995 9999999965 3343322222111111000 00000
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhhh
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSK 296 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~ 296 (351)
.+. ....+|+|+|||||++|+|+|..+.++| .+|++++++. .++....+ +.+ +.+
T Consensus 440 ~~~----~~~~Gk~VvVIGGG~tA~D~A~ta~R~G--------------a~Vtlv~rr~~~~mpa~~~e----~~~-a~e 496 (944)
T PRK12779 440 TPL----PEVKGKEVFVIGGGNTAMDAARTAKRLG--------------GNVTIVYRRTKSEMPARVEE----LHH-ALE 496 (944)
T ss_pred ccc----cccCCCEEEEECCCHHHHHHHHHHHHcC--------------CEEEEEEecCcccccccHHH----HHH-HHH
Confidence 000 0125679999999999999999999988 7899999863 33332222 222 346
Q ss_pred cCcEEEcCe-EEEEeCC----eE---Ee---------c--------CC--cEEeccEEEEecCCCCccccc--cCCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQ----KL---IL---------N--------DG--TEVPYGLLVWSTGVGPSTLVK--SLDLPKS 347 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~----~v---~~---------~--------~g--~~~~~D~vi~a~G~~p~~~~~--~~gl~~~ 347 (351)
.||+++.+. ++++..+ .+ .+ . +| .+++||.||+|+|+.|++.+. ..|++++
T Consensus 497 eGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~ 576 (944)
T PRK12779 497 EGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTN 576 (944)
T ss_pred CCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceEC
Confidence 799999884 7777432 12 11 1 22 358999999999999994332 3467777
Q ss_pred CCC
Q 018704 348 PGG 350 (351)
Q Consensus 348 ~~G 350 (351)
++|
T Consensus 577 ~~G 579 (944)
T PRK12779 577 KWG 579 (944)
T ss_pred CCC
Confidence 665
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=210.76 Aligned_cols=144 Identities=18% Similarity=0.238 Sum_probs=109.0
Q ss_pred EeeccEEEEecCCCcCCCCCCCccc-cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHH
Q 018704 168 KISYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 246 (351)
Q Consensus 168 ~~~~d~lviAtG~~p~~p~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a 246 (351)
++.||+||||||+.|..|++++.+. .++++ +++..+.. .| ++++|||||.+|+|+|
T Consensus 272 ~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts---~d~~~l~~----------lp----------k~VvIVGgG~iGvE~A 328 (659)
T PTZ00153 272 EFKVKNIIIATGSTPNIPDNIEVDQKSVFTS---DTAVKLEG----------LQ----------NYMGIVGMGIIGLEFM 328 (659)
T ss_pred EEECCEEEEcCCCCCCCCCCCCCCCCcEEeh---HHhhhhhh----------cC----------CceEEECCCHHHHHHH
Confidence 7999999999999999887666542 23332 33322211 12 4899999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHh-hhcCcEEEcCe-EEEEeCC----eEEe--c
Q 018704 247 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQL-SKSGVRLVRGI-VKDVDSQ----KLIL--N 317 (351)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l-~~~gV~~~~~~-v~~v~~~----~v~~--~ 317 (351)
..+..++ .+|+++++. .+++.+++++.+.+.+.+ ++.||+++.+. |++++.+ .+.+ .
T Consensus 329 ~~l~~~G--------------~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~ 394 (659)
T PTZ00153 329 DIYTALG--------------SEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHS 394 (659)
T ss_pred HHHHhCC--------------CeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEe
Confidence 9998877 899999997 578889999999888875 67899999995 8888653 1433 2
Q ss_pred C-------C--------cEEeccEEEEecCCCCc-cc--cccCCCCCCC
Q 018704 318 D-------G--------TEVPYGLLVWSTGVGPS-TL--VKSLDLPKSP 348 (351)
Q Consensus 318 ~-------g--------~~~~~D~vi~a~G~~p~-~~--~~~~gl~~~~ 348 (351)
+ + +++++|.||+|+|++|+ ++ ++.+++++++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~ 443 (659)
T PTZ00153 395 ERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKR 443 (659)
T ss_pred ccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccC
Confidence 1 1 26999999999999999 54 3566666543
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-25 Score=213.49 Aligned_cols=240 Identities=17% Similarity=0.221 Sum_probs=130.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhh------------hhhcc----------ccccccc----
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA------------STCVG----------TLEFRSV---- 116 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~------------~~~~~----------~~~~~~~---- 116 (351)
++|+|||||++||++|+.|.+.|++++++|+++......... ..... .+.+.++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 689999999999999999999999999999988764332111 11100 0000000
Q ss_pred -ccchhccchhhhcCCC---eEEEEEEeeeEeCCC-----CEEEEEeecCccccCCCceeEeeccEEEEecCCC--cCCC
Q 018704 117 -AEPIARIQPAISREPG---SYFFLSHCAGIDTDN-----HVVHCETVTDELRTLEPWKFKISYDKLVIALGAE--ASTF 185 (351)
Q Consensus 117 -~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~--p~~p 185 (351)
...+.++...++...+ ...++.+|+++.... ..|.+++..++. ..+..||+||+|||.. |++|
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~------~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGK------EETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTE------EEEEEECEEEEEE-SSSCESB-
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCe------EEEEEeCeEEEcCCCcCCCCCC
Confidence 1122233333333222 334567888886532 467776544443 2367799999999964 8888
Q ss_pred C--CCCcc---ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhh
Q 018704 186 G--IHGVK---ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (351)
Q Consensus 186 ~--i~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~ 260 (351)
. +||++ ..++++.++.+... -++|+|+|||+|+||+|+|.+|+..+
T Consensus 156 ~~~~~G~e~F~G~i~HS~~yr~~~~----------------------f~gKrVlVVG~g~Sg~DIa~el~~~a------- 206 (531)
T PF00743_consen 156 EPSFPGLEKFKGEIIHSKDYRDPEP----------------------FKGKRVLVVGGGNSGADIAVELSRVA------- 206 (531)
T ss_dssp ----CTGGGHCSEEEEGGG--TGGG----------------------GTTSEEEEESSSHHHHHHHHHHTTTS-------
T ss_pred hhhhhhhhcCCeeEEccccCcChhh----------------------cCCCEEEEEeCCHhHHHHHHHHHHhc-------
Confidence 4 89986 34566666655433 34569999999999999999998754
Q ss_pred hcCCCCccEEEEEeCCC--CCCCC-----------------------cHHHH----------------------------
Q 018704 261 YSHVKDYIHVTLIEANE--ILSSF-----------------------DDRLR---------------------------- 287 (351)
Q Consensus 261 ~~~~~~~~~v~~~~~~~--~l~~~-----------------------~~~~~---------------------------- 287 (351)
.+|++..|+. +++.+ +..+.
T Consensus 207 -------~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~ 279 (531)
T PF00743_consen 207 -------KKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQ 279 (531)
T ss_dssp -------CCEEEECC-----------------------------------------------------------------
T ss_pred -------CCeEEEEeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5566665542 11110 00000
Q ss_pred -----HHHHHHhhhcCcEEEcCeEEEEeCCeEEecCCcEE-eccEEEEecCCCCc-cccccCCCC
Q 018704 288 -----HYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPS-TLVKSLDLP 345 (351)
Q Consensus 288 -----~~~~~~l~~~gV~~~~~~v~~v~~~~v~~~~g~~~-~~D~vi~a~G~~p~-~~~~~~gl~ 345 (351)
+.+...+....|++. ..|+++++++|+++||+++ ++|.||+|||+..+ +|+++.-++
T Consensus 280 ~~~ind~l~~~i~~G~i~vk-~~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~ 343 (531)
T PF00743_consen 280 HPTINDELPNRIRSGRIKVK-PDIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIK 343 (531)
T ss_dssp -------------------E-E-EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-
T ss_pred cccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 111112223334433 2477888899999999876 69999999999999 998864333
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=207.56 Aligned_cols=236 Identities=19% Similarity=0.233 Sum_probs=148.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
...++|+||||||+||++|..|++.|++|+|+|+.+...... ..+.+.+. +...+...........++.++...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l-----~~gip~~~-~~~~~~~~~~~~l~~~gv~~~~~~ 211 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL-----RYGIPEFR-LPKDIVDREVERLLKLGVEIRTNT 211 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEe-----eccCCCcc-CCHHHHHHHHHHHHHcCCEEEeCC
Confidence 456899999999999999999999999999999987642110 01122211 111111211122233467766554
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
... ..+.+ ++. .+.||+||+|||+. |+.+++||.+ .++++. ..+...........
T Consensus 212 ~v~-----~~v~~----~~~--------~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~------~~~l~~~~~~~~~~ 268 (457)
T PRK11749 212 EVG-----RDITL----DEL--------RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSA------VDFLTRVNQAVADY 268 (457)
T ss_pred EEC-----CccCH----HHH--------HhhCCEEEEccCCCCCCCCCCCCccCCCcEEH------HHHHHHHhhccccc
Confidence 331 11211 111 46799999999986 8888899874 222221 12222111000001
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLS 295 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~ 295 (351)
.. ..+++|+|||||++|+|+|..+.+++. .+|+++++.. .++.... ..+.++
T Consensus 269 ~~--------~~g~~VvViGgG~~g~e~A~~l~~~G~-------------~~Vtlv~~~~~~~~~~~~~-----~~~~~~ 322 (457)
T PRK11749 269 DL--------PVGKRVVVIGGGNTAMDAARTAKRLGA-------------ESVTIVYRRGREEMPASEE-----EVEHAK 322 (457)
T ss_pred cC--------CCCCeEEEECCCHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHH-----HHHHHH
Confidence 11 235699999999999999999988761 3899999853 3433222 245677
Q ss_pred hcCcEEEcCe-EEEEeCCe-----EEec-------------------CCcEEeccEEEEecCCCCc-cccc-cCCCCCCC
Q 018704 296 KSGVRLVRGI-VKDVDSQK-----LILN-------------------DGTEVPYGLLVWSTGVGPS-TLVK-SLDLPKSP 348 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~~~-----v~~~-------------------~g~~~~~D~vi~a~G~~p~-~~~~-~~gl~~~~ 348 (351)
+.||+++++. ++++.++. |++. ++.++++|.||+|+|++|+ .++. ..++++++
T Consensus 323 ~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~ 402 (457)
T PRK11749 323 EEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNR 402 (457)
T ss_pred HCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCC
Confidence 8899999995 88886432 5542 2346999999999999999 5554 45777776
Q ss_pred CC
Q 018704 349 GG 350 (351)
Q Consensus 349 ~G 350 (351)
+|
T Consensus 403 ~g 404 (457)
T PRK11749 403 WG 404 (457)
T ss_pred CC
Confidence 65
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=204.35 Aligned_cols=241 Identities=24% Similarity=0.382 Sum_probs=191.5
Q ss_pred CCcEEEECCchhHHHHHHhhhc---cCceEEEEcCCCccccc-hhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
..++||||-|++|..+..++.+ .-++++++-..++..|. .++.....+.-........-. . ++...++..+.
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~---d-wy~~~~i~L~~ 78 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRN---D-WYEENGITLYT 78 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccch---h-hHHHcCcEEEc
Confidence 4689999999999999999977 55789999988887765 444444433222222222222 2 23344555554
Q ss_pred -EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhh
Q 018704 138 -SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (351)
Q Consensus 138 -~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (351)
.+|+.||++.+.+.. +.|. .+.||.||+|||+.|..+++||.+ +.++.++++++........
T Consensus 79 ~~~v~~idr~~k~V~t---~~g~--------~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~a----- 142 (793)
T COG1251 79 GEKVIQIDRANKVVTT---DAGR--------TVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCA----- 142 (793)
T ss_pred CCeeEEeccCcceEEc---cCCc--------EeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHH-----
Confidence 589999999999976 4666 999999999999999999999987 6788899999988877652
Q ss_pred ccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--CCCCcHHHHHHHHHH
Q 018704 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--LSSFDDRLRHYATTQ 293 (351)
Q Consensus 216 ~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--l~~~~~~~~~~~~~~ 293 (351)
+..++-+|||||.-|+|+|..|.+.| .++++++-.+. -..+|+.....+++.
T Consensus 143 ------------r~~~~avVIGGGLLGlEaA~~L~~~G--------------m~~~Vvh~~~~lMerQLD~~ag~lL~~~ 196 (793)
T COG1251 143 ------------RNKKKAVVIGGGLLGLEAARGLKDLG--------------MEVTVVHIAPTLMERQLDRTAGRLLRRK 196 (793)
T ss_pred ------------hccCCcEEEccchhhhHHHHHHHhCC--------------CceEEEeecchHHHHhhhhHHHHHHHHH
Confidence 34457899999999999999999988 88999888753 266888889999999
Q ss_pred hhhcCcEEEcCe-EEEEeC----CeEEecCCcEEeccEEEEecCCCCc-cccccCCCCCCC
Q 018704 294 LSKSGVRLVRGI-VKDVDS----QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSP 348 (351)
Q Consensus 294 l~~~gV~~~~~~-v~~v~~----~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~ 348 (351)
+++.|++++++. ..++.+ .++.++||..+++|.||+|+|++|| ++.+..|+.+++
T Consensus 197 le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr 257 (793)
T COG1251 197 LEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR 257 (793)
T ss_pred HHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCC
Confidence 999999999985 444432 5899999999999999999999999 899999998875
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-25 Score=224.13 Aligned_cols=283 Identities=14% Similarity=0.119 Sum_probs=169.1
Q ss_pred cccccCCCCCCCCCcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcC
Q 018704 14 KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
.|...|.+.... .++....++++..+++... .+.. +......++|+|||||||||+||.+|++.|++|+|||+
T Consensus 389 ~Ce~~C~~~~~~-~pv~I~~ler~~~d~~~~~----~~~~--~~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~ 461 (1006)
T PRK12775 389 QCEAQCIIAKKH-ESVGIGRLERFVGDNARAK----PVKP--PRFSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEA 461 (1006)
T ss_pred CHHHhCcCCCCC-CCeeecHHHHHHHHHHHHc----CCCC--CCCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEec
Confidence 455556544332 4567788888877654321 1111 11223467999999999999999999999999999998
Q ss_pred CCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccE
Q 018704 94 RNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDK 173 (351)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~ 173 (351)
.+..... ...+.+.+....+.+...... ....++.+....+.+. .+.+..+. . ...||+
T Consensus 462 ~~~~GG~-----l~~gip~~rl~~e~~~~~~~~-l~~~Gv~~~~~~~vg~-----~~~~~~l~--~--------~~~yDa 520 (1006)
T PRK12775 462 LHVVGGV-----LQYGIPSFRLPRDIIDREVQR-LVDIGVKIETNKVIGK-----TFTVPQLM--N--------DKGFDA 520 (1006)
T ss_pred CCCCcce-----eeccCCccCCCHHHHHHHHHH-HHHCCCEEEeCCccCC-----ccCHHHHh--h--------ccCCCE
Confidence 7654211 111333332222222223333 3345788877655432 22221110 0 346999
Q ss_pred EEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHH
Q 018704 174 LVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD 251 (351)
Q Consensus 174 lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~ 251 (351)
||||||+. |+.++|||.+ +++++.. .+...+... .....+..+. ....+|+|+|||||++|+|+|..+.+
T Consensus 521 ViIATGa~~pr~l~IpG~~l~gV~~a~------~fL~~~~~~-~~~~~~~~~~-~~~~Gk~VvVIGgG~tA~D~A~~a~r 592 (1006)
T PRK12775 521 VFLGVGAGAPTFLGIPGEFAGQVYSAN------EFLTRVNLM-GGDKFPFLDT-PISLGKSVVVIGAGNTAMDCLRVAKR 592 (1006)
T ss_pred EEEecCCCCCCCCCCCCcCCCCcEEHH------HHHHHHHhc-CccccccccC-CccCCCEEEEECCcHHHHHHHHHHHH
Confidence 99999995 8999999975 3333322 222221100 0000010000 01346799999999999999999998
Q ss_pred HHHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---C---eEEec-----
Q 018704 252 FIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---Q---KLILN----- 317 (351)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~---~v~~~----- 317 (351)
+|. ..|++++|.. .++....+ .+.+++.||+++++. ++++.. + +|.+.
T Consensus 593 lGa-------------~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~ 654 (1006)
T PRK12775 593 LGA-------------PTVRCVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELG 654 (1006)
T ss_pred cCC-------------CEEEEEeecCcccCCCCHHH-----HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEec
Confidence 872 4688888752 23322111 245677899999984 777642 2 23221
Q ss_pred ----CC----------cEEeccEEEEecCCCCc-ccccc-CCCCCCCCC
Q 018704 318 ----DG----------TEVPYGLLVWSTGVGPS-TLVKS-LDLPKSPGG 350 (351)
Q Consensus 318 ----~g----------~~~~~D~vi~a~G~~p~-~~~~~-~gl~~~~~G 350 (351)
+| .++++|.||+|+|+.|+ .++.. .|++++++|
T Consensus 655 ~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G 703 (1006)
T PRK12775 655 EPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWG 703 (1006)
T ss_pred ccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCC
Confidence 12 25899999999999999 55543 367776665
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=215.87 Aligned_cols=275 Identities=16% Similarity=0.164 Sum_probs=163.4
Q ss_pred cccccCCCCCCCCCcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcC
Q 018704 14 KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
.|+..+.+... -.++....+.+++.+++..... ..+ ..+......++|+|||||||||+||++|++.|++|+|||+
T Consensus 493 ~Ce~~C~R~~~-d~pV~I~~Lkr~a~d~~~~~~~-~~~--~~~~~~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek 568 (1012)
T TIGR03315 493 QCQYKCTRLDY-DESVNIREMKKVAAEKGYDEYK-TRW--HKPQGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEK 568 (1012)
T ss_pred chHHHhcCCCC-CCCCcccHHHHHHHhhHHHhcC-ccC--CCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 44555544322 2345567777777665321100 011 1111223568999999999999999999999999999999
Q ss_pred CCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccE
Q 018704 94 RNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDK 173 (351)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~ 173 (351)
.+...... ..+.+.+......+.+....+. ..++.++.+.. ..+.+ .+.. ...||+
T Consensus 569 ~~~lGG~l-----~~~IP~~rlp~e~l~~~ie~l~-~~GVe~~~g~~-------~d~~v---e~l~--------~~gYDa 624 (1012)
T TIGR03315 569 KEKPGGVV-----KNIIPEFRISAESIQKDIELVK-FHGVEFKYGCS-------PDLTV---AELK--------NQGYKY 624 (1012)
T ss_pred ccccCcee-----eecccccCCCHHHHHHHHHHHH-hcCcEEEEecc-------cceEh---hhhh--------cccccE
Confidence 87642211 0012222111112222222222 34666655421 11222 1111 567999
Q ss_pred EEEecCCC-cCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHH
Q 018704 174 LVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF 252 (351)
Q Consensus 174 lviAtG~~-p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~ 252 (351)
||||||+. ++.+.++|..+.++. .++ +...+.. .. .....+++|+|||||++|+|+|..+.+.
T Consensus 625 VIIATGA~~~~~l~I~G~~~~v~~--ave----fL~~~~~----~~------~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl 688 (1012)
T TIGR03315 625 VILAIGAWKHGPLRLEGGGERVLK--SLE----FLRAFKE----GP------TINPLGKHVVVVGGGNTAMDAARAALRV 688 (1012)
T ss_pred EEECCCCCCCCCCCcCCCCcceee--HHH----HHHHhhc----cc------cccccCCeEEEECCCHHHHHHHHHHHHh
Confidence 99999997 555678875433321 122 2221110 00 0013457999999999999999988765
Q ss_pred -HHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCCeEEe------------
Q 018704 253 -IMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLIL------------ 316 (351)
Q Consensus 253 -~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~~v~~------------ 316 (351)
|. .+|++++|+. .++..+.++. + +.+.||+++.+. +.+++++++.+
T Consensus 689 ~Ga-------------~kVtLVyRr~~~~Mpa~~eEl~----~-aleeGVe~~~~~~p~~I~~g~l~v~~~~l~~~d~sG 750 (1012)
T TIGR03315 689 PGV-------------EKVTVVYRRTKRYMPASREELE----E-ALEDGVDFKELLSPESFEDGTLTCEVMKLGEPDASG 750 (1012)
T ss_pred CCC-------------ceEEEEEccCccccccCHHHHH----H-HHHcCCEEEeCCceEEEECCeEEEEEEEeecccCCC
Confidence 31 4799999863 4555544432 2 235699999884 66666443322
Q ss_pred -----cCCc--EEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 317 -----NDGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 317 -----~~g~--~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.+|+ ++++|.||+|+|+.|+ .+++.+|++++++|
T Consensus 751 r~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G 792 (1012)
T TIGR03315 751 RRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYG 792 (1012)
T ss_pred ceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCC
Confidence 1233 5899999999999999 88888898887766
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=218.84 Aligned_cols=241 Identities=20% Similarity=0.234 Sum_probs=149.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
...++|+|||||||||+||.+|++.|++|+|||+.+.+... ...+.+.+. +...+.+.........++.+....
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~-----l~~gip~~r-lp~~~~~~~~~~l~~~gv~~~~~~ 502 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGV-----LKYGIPEFR-LPKKIVDVEIENLKKLGVKFETDV 502 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCe-----eeecCCCCC-CCHHHHHHHHHHHHHCCCEEECCC
Confidence 45689999999999999999999999999999986543211 111233322 112222222222334477776554
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC-CcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
+. .+.+.+ ++.. ...||+||||||+ .|+.+++||.+ +++++..++.....+.... ....
T Consensus 503 ~v-----~~~v~~---~~l~--------~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~---~~~~ 563 (752)
T PRK12778 503 IV-----GKTITI---EELE--------EEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAA---SPDS 563 (752)
T ss_pred EE-----CCcCCH---HHHh--------hcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccc---cccc
Confidence 33 122222 1112 5679999999999 49999999975 3344333222211111100 0000
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCC--CCCCCcHHHHHHHHHHh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANE--ILSSFDDRLRHYATTQL 294 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~-v~~~~~~~--~l~~~~~~~~~~~~~~l 294 (351)
..| ...+++|+|||||++|+|+|..+.++| .+ |+++++.. .++....++ +.+
T Consensus 564 ~~~------~~~gk~VvVIGgG~~a~d~A~~~~r~G--------------a~~Vtlv~r~~~~~~~~~~~e~-----~~~ 618 (752)
T PRK12778 564 DTP------IKFGKKVAVVGGGNTAMDSARTAKRLG--------------AERVTIVYRRSEEEMPARLEEV-----KHA 618 (752)
T ss_pred cCc------ccCCCcEEEECCcHHHHHHHHHHHHcC--------------CCeEEEeeecCcccCCCCHHHH-----HHH
Confidence 111 134579999999999999999999887 54 99999863 334322221 346
Q ss_pred hhcCcEEEcCe-EEEEeC---C---eEEec---------CC-----------cEEeccEEEEecCCCCc-cccccC-CCC
Q 018704 295 SKSGVRLVRGI-VKDVDS---Q---KLILN---------DG-----------TEVPYGLLVWSTGVGPS-TLVKSL-DLP 345 (351)
Q Consensus 295 ~~~gV~~~~~~-v~~v~~---~---~v~~~---------~g-----------~~~~~D~vi~a~G~~p~-~~~~~~-gl~ 345 (351)
++.||+++++. ++++.. + +|.+. +| .+++||.||+|+|+.|+ .++..+ |++
T Consensus 619 ~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~ 698 (752)
T PRK12778 619 KEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLE 698 (752)
T ss_pred HHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCce
Confidence 77899999884 766642 1 23331 22 25899999999999999 555554 777
Q ss_pred CCCCC
Q 018704 346 KSPGG 350 (351)
Q Consensus 346 ~~~~G 350 (351)
++++|
T Consensus 699 ~~~~G 703 (752)
T PRK12778 699 LNRKG 703 (752)
T ss_pred ECCCC
Confidence 77665
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-24 Score=204.58 Aligned_cols=289 Identities=19% Similarity=0.222 Sum_probs=169.3
Q ss_pred ccCcccccccCCCCCCCCCcceeccccccccCCCCCccccccc-cCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCce
Q 018704 9 RNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQY-SGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYD 87 (351)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~ 87 (351)
++....|...|.... .-..+.+..++++..++.... .+ .+. .+.....++|+|||||||||++|..|++.|++
T Consensus 95 ~vC~~~Ce~~C~~~~-~~~~v~i~~l~r~~~~~~~~~----~~~~~~-~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~ 168 (471)
T PRK12810 95 RVCPAPCEGACTLNI-NFGPVTIKNIERYIIDKAFEE----GWVKPD-PPVKRTGKKVAVVGSGPAGLAAADQLARAGHK 168 (471)
T ss_pred CcCCchhHHhccCCC-CCCCccHHHHHHHHHHHHHHc----CCCCCC-CCcCCCCCEEEEECcCHHHHHHHHHHHhCCCc
Confidence 334444666665543 224556777777777643321 11 111 12224567999999999999999999999999
Q ss_pred EEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCcee
Q 018704 88 VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKF 167 (351)
Q Consensus 88 v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~ 167 (351)
|+|||+.+..... ...+.+.+......+..... .....++.++.......+... +..
T Consensus 169 V~vie~~~~~GG~-----l~~gip~~~~~~~~~~~~~~-~~~~~gv~~~~~~~v~~~~~~---------~~~-------- 225 (471)
T PRK12810 169 VTVFERADRIGGL-----LRYGIPDFKLEKEVIDRRIE-LMEAEGIEFRTNVEVGKDITA---------EEL-------- 225 (471)
T ss_pred EEEEecCCCCCce-----eeecCCcccCCHHHHHHHHH-HHHhCCcEEEeCCEECCcCCH---------HHH--------
Confidence 9999998764211 01122222111111222222 233346776655443322110 111
Q ss_pred EeeccEEEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccC-CCCCCHhhhcccCeEEEECCChHHHH
Q 018704 168 KISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD-VPGISEEEKSRLLHCVVVGGGPTGVE 244 (351)
Q Consensus 168 ~~~~d~lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~v~VvGgG~~a~e 244 (351)
...||+||+|||+. |+.+.+||.+ .++++.. .+.....+...... .+. ....+++|+|||||++|+|
T Consensus 226 ~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~------~~l~~~~~~~~~~~~~~~----~~~~gk~VvVIGgG~~g~e 295 (471)
T PRK12810 226 LAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAM------DFLIQNTRRVLGDETEPF----ISAKGKHVVVIGGGDTGMD 295 (471)
T ss_pred HhhCCEEEEecCCCCCCcCCCCCccCCCcEEHH------HHHHHHHhhhcccccccc----ccCCCCEEEEECCcHHHHH
Confidence 45799999999997 8888999975 2333211 11111100000000 000 0134579999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcH-------H-HHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce
Q 018704 245 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDD-------R-LRHYATTQLSKSGVRLVRGI-VKDVDS--QK 313 (351)
Q Consensus 245 ~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~-------~-~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~ 313 (351)
+|..+.+.+. .+|+++...... ..+. . ......+.+++.||+++++. ++++.. +.
T Consensus 296 ~A~~~~~~ga-------------~~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~ 361 (471)
T PRK12810 296 CVGTAIRQGA-------------KSVTQRDIMPMP-PSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGK 361 (471)
T ss_pred HHHHHHHcCC-------------CeEEEccccCCC-ccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCE
Confidence 9998887762 478866554321 1111 0 01113456778899999995 888863 22
Q ss_pred E---E-----ecCC---------cEEeccEEEEecCCCCc--cccccCCCCCCCCC
Q 018704 314 L---I-----LNDG---------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGG 350 (351)
Q Consensus 314 v---~-----~~~g---------~~~~~D~vi~a~G~~p~--~~~~~~gl~~~~~G 350 (351)
+ . +.+| .++++|.||+|+|+.|+ .|++.+|++++++|
T Consensus 362 v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g 417 (471)
T PRK12810 362 VTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERG 417 (471)
T ss_pred EEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCC
Confidence 2 2 2232 46999999999999998 48888888888766
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-24 Score=185.94 Aligned_cols=245 Identities=21% Similarity=0.251 Sum_probs=162.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----------h-----hhhhhc------ccccccccccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----------L-----LASTCV------GTLEFRSVAEP 119 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----------~-----~~~~~~------~~~~~~~~~~~ 119 (351)
..+||+|||+||+|..||++.++.|++.+++|++..+..+- + +..... ...........
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 35999999999999999999999999999999865532210 0 000000 00111111111
Q ss_pred hhccc--------------hhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCC
Q 018704 120 IARIQ--------------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-AST 184 (351)
Q Consensus 120 ~~~~~--------------~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~ 184 (351)
++..+ ..+.....+.++.+.-.- .+.+.+.+.. .++. .+.+.++++|||||+. +.+
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf--~~p~~V~v~k-~dg~------~~ii~aKnIiiATGSeV~~~ 188 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSF--LDPNKVSVKK-IDGE------DQIIKAKNIIIATGSEVTPF 188 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEee--cCCceEEEec-cCCC------ceEEeeeeEEEEeCCccCCC
Confidence 11111 111112223333332222 2445555543 2333 3489999999999995 444
Q ss_pred CCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 185 p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
|+|.--++.+.++... +.+..+|. +++|||+|.+|+|+..-..++|
T Consensus 189 PGI~IDekkIVSStgA-------------LsL~~vPk----------~~~viG~G~IGLE~gsV~~rLG----------- 234 (506)
T KOG1335|consen 189 PGITIDEKKIVSSTGA-------------LSLKEVPK----------KLTVIGAGYIGLEMGSVWSRLG----------- 234 (506)
T ss_pred CCeEecCceEEecCCc-------------cchhhCcc----------eEEEEcCceeeeehhhHHHhcC-----------
Confidence 4332211334443332 34555664 9999999999999999999998
Q ss_pred CCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEec---CC--cEEeccEEEEecC
Q 018704 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILN---DG--TEVPYGLLVWSTG 332 (351)
Q Consensus 265 ~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~---~g--~~~~~D~vi~a~G 332 (351)
.+||+++.. ++.+.+|.++++.+++.|+..|+++++++ |...+. + .+++. ++ .+++||++++++|
T Consensus 235 ---seVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiG 311 (506)
T KOG1335|consen 235 ---SEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIG 311 (506)
T ss_pred ---CeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEcc
Confidence 999999986 57788999999999999999999999995 888764 3 23332 23 3589999999999
Q ss_pred CCCc-c--ccccCCCCCCCCCC
Q 018704 333 VGPS-T--LVKSLDLPKSPGGR 351 (351)
Q Consensus 333 ~~p~-~--~~~~~gl~~~~~G~ 351 (351)
++|- + =++++|++.|++||
T Consensus 312 RrP~t~GLgle~iGi~~D~r~r 333 (506)
T KOG1335|consen 312 RRPFTEGLGLEKIGIELDKRGR 333 (506)
T ss_pred CcccccCCChhhcccccccccc
Confidence 9998 2 34566888888886
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-24 Score=210.51 Aligned_cols=233 Identities=18% Similarity=0.241 Sum_probs=146.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
...++|+||||||+||++|..|++.|++|+|||+.+...... ..+.+.+. +...+.+.........++.+....
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l-----~~gip~~~-~~~~~~~~~~~~l~~~Gv~i~~~~ 264 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMM-----RYGIPRFR-LPESVIDADIAPLRAMGAEFRFNT 264 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcee-----eecCCCCC-CCHHHHHHHHHHHHHcCCEEEeCC
Confidence 355799999999999999999999999999999987642111 01122221 111111111112233466665544
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCc-CCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p-~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
+.+++ +.+ .+. ...||+||+|||+.+ +.+++||.+ ++++. ...+..... ..
T Consensus 265 ~v~~d-----v~~---~~~---------~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~------~~~~l~~~~----~~ 317 (652)
T PRK12814 265 VFGRD-----ITL---EEL---------QKEFDAVLLAVGAQKASKMGIPGEELPGVIS------GIDFLRNVA----LG 317 (652)
T ss_pred cccCc-----cCH---HHH---------HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEe------HHHHHHHhh----cC
Confidence 33222 111 111 335999999999984 577899864 22222 111111110 00
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLS 295 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~ 295 (351)
. ....+++|+|||||++|+|+|..+.+++. .+|+++++.. .++..+.++. + +.
T Consensus 318 ~-------~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga-------------~~Vtlv~r~~~~~mpa~~~ei~----~-a~ 372 (652)
T PRK12814 318 T-------ALHPGKKVVVIGGGNTAIDAARTALRLGA-------------ESVTILYRRTREEMPANRAEIE----E-AL 372 (652)
T ss_pred C-------cccCCCeEEEECCCHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHHH----H-HH
Confidence 0 01345799999999999999999988762 4799999863 4555444332 2 23
Q ss_pred hcCcEEEcCe-EEEEeC--CeE-----Eec---------------CCc--EEeccEEEEecCCCCc-cccccCCCCCCCC
Q 018704 296 KSGVRLVRGI-VKDVDS--QKL-----ILN---------------DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPG 349 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~--~~v-----~~~---------------~g~--~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~ 349 (351)
+.||+++++. ++++.. +++ .+. +|+ ++++|.||+|+|+.|+ .+++..|++++++
T Consensus 373 ~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~ 452 (652)
T PRK12814 373 AEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRN 452 (652)
T ss_pred HcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCC
Confidence 5699999984 777653 222 111 122 5899999999999999 7888888888776
Q ss_pred C
Q 018704 350 G 350 (351)
Q Consensus 350 G 350 (351)
|
T Consensus 453 G 453 (652)
T PRK12814 453 G 453 (652)
T ss_pred C
Confidence 6
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-23 Score=211.18 Aligned_cols=245 Identities=17% Similarity=0.147 Sum_probs=158.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (351)
..+||+|||||||||+||.+|++.|++|+|||+++.......... .................++....++.++. .+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~ 238 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---ETIDGKPAADWAAATVAELTAMPEVTLLPRTT 238 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---cccCCccHHHHHHHHHHHHhcCCCcEEEcCCE
Confidence 357999999999999999999999999999999876432111110 01111111112233333444444566554 57
Q ss_pred eeeEeCCCCEEEEEeecCc-----cccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHh
Q 018704 140 CAGIDTDNHVVHCETVTDE-----LRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLN 213 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~ 213 (351)
|.+++.......+...... .....+....+.|++||||||+.++.|++||.+ +.++....... +....
T Consensus 239 V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~---~l~~~--- 312 (985)
T TIGR01372 239 AFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAART---YLNRY--- 312 (985)
T ss_pred EEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHH---HHHhh---
Confidence 7777654332222211100 000011123689999999999999999999975 34444322222 11110
Q ss_pred hhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHH
Q 018704 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (351)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~ 293 (351)
.. ..+++|+|||+|++|+++|..|.+.+. ..|+++++.+. +...+.+.
T Consensus 313 ---~~---------~~gk~VvViG~G~~g~e~A~~L~~~G~-------------~vV~vv~~~~~-------~~~~l~~~ 360 (985)
T TIGR01372 313 ---GV---------APGKRIVVATNNDSAYRAAADLLAAGI-------------AVVAIIDARAD-------VSPEARAE 360 (985)
T ss_pred ---Cc---------CCCCeEEEECCCHHHHHHHHHHHHcCC-------------ceEEEEccCcc-------hhHHHHHH
Confidence 00 234699999999999999999998761 34778876532 23345677
Q ss_pred hhhcCcEEEcCe-EEEEeCC----eEEec----CCcEEeccEEEEecCCCCc-cccccCCCCC
Q 018704 294 LSKSGVRLVRGI-VKDVDSQ----KLILN----DGTEVPYGLLVWSTGVGPS-TLVKSLDLPK 346 (351)
Q Consensus 294 l~~~gV~~~~~~-v~~v~~~----~v~~~----~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~ 346 (351)
+++.||+++.+. |+++.++ +|++. ++++++||.|++++|++|+ +++..+|+++
T Consensus 361 L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~ 423 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKL 423 (985)
T ss_pred HHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCe
Confidence 889999999995 8888764 45554 4567999999999999999 8888877654
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=207.63 Aligned_cols=273 Identities=15% Similarity=0.197 Sum_probs=160.9
Q ss_pred CcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhh
Q 018704 27 SNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST 106 (351)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~ 106 (351)
..+....++++..+.+.... +...........++|+|||||||||++|..|++.|++|+|||+.+.+... +
T Consensus 296 ~~v~I~~l~r~~~d~~~~~~----~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~--l--- 366 (654)
T PRK12769 296 GAVTIGNIERYISDQALAKG----WRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGL--L--- 366 (654)
T ss_pred CCeecCHHHHHHHHHHHHhC----CCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce--e---
Confidence 35667777777766443211 11111111235689999999999999999999999999999987664211 0
Q ss_pred hcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCC
Q 018704 107 CVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTF 185 (351)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p 185 (351)
..+.+.+. +...+...........++.+......+.+ +.++ .. ...||+||+|||+. ++.+
T Consensus 367 ~~gip~~~-l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-----i~~~----~~--------~~~~DavilAtGa~~~~~l 428 (654)
T PRK12769 367 TFGIPAFK-LDKSLLARRREIFSAMGIEFELNCEVGKD-----ISLE----SL--------LEDYDAVFVGVGTYRSMKA 428 (654)
T ss_pred eecCCCcc-CCHHHHHHHHHHHHHCCeEEECCCEeCCc-----CCHH----HH--------HhcCCEEEEeCCCCCCCCC
Confidence 01222221 22222222222233446666544322111 1110 11 34699999999986 5567
Q ss_pred CCCCccc-cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 186 GIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 186 ~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
.+||.+. +++.. ..........+ ..+..... .......+++|+|||||++|+|+|..+.+++.
T Consensus 429 ~i~g~~~~Gv~~a--~~~l~~~~~~~---~~~~~~~~-~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga---------- 492 (654)
T PRK12769 429 GLPNEDAPGVYDA--LPFLIANTKQV---MGLEELPE-EPFINTAGLNVVVLGGGDTAMDCVRTALRHGA---------- 492 (654)
T ss_pred CCCCCCCCCeEEh--HHHHHHHHhhh---ccCccccc-cccccCCCCeEEEECCcHHHHHHHHHHHHcCC----------
Confidence 8888752 22221 11111100010 01110000 00001345799999999999999999888762
Q ss_pred CCccEEEEEeCCC--CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---C---eEEe---------cCCc------
Q 018704 265 KDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---Q---KLIL---------NDGT------ 320 (351)
Q Consensus 265 ~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~---~v~~---------~~g~------ 320 (351)
.+|+++++.. .++..+.+ .+.+++.||+++++. ++++.. + +|++ .+|+
T Consensus 493 ---~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~ 564 (654)
T PRK12769 493 ---SNVTCAYRRDEANMPGSKKE-----VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPI 564 (654)
T ss_pred ---CeEEEeEecCCCCCCCCHHH-----HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeC
Confidence 4799999863 24443332 345778899999984 777742 2 2333 1232
Q ss_pred -----EEeccEEEEecCCCCc--cccccCCCCCCCCC
Q 018704 321 -----EVPYGLLVWSTGVGPS--TLVKSLDLPKSPGG 350 (351)
Q Consensus 321 -----~~~~D~vi~a~G~~p~--~~~~~~gl~~~~~G 350 (351)
++++|.||+|+|+.|+ .+++.+|++++++|
T Consensus 565 ~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G 601 (654)
T PRK12769 565 PGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWG 601 (654)
T ss_pred CCceEEEECCEEEECccCCCCccccccccCCcCCCCC
Confidence 5999999999999998 47888889888776
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=192.51 Aligned_cols=251 Identities=22% Similarity=0.215 Sum_probs=148.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-E
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (351)
..++|+|||||++|+++|..|++.|++|++||+.+....... .+..........+......+... ++.++.. .
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~-----~~~~~~~~~~~~~~~~~~~l~~~-~i~~~~~~~ 90 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML-----FGIPEFRIPIERVREGVKELEEA-GVVFHTRTK 90 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee-----ecCcccccCHHHHHHHHHHHHhC-CeEEecCcE
Confidence 457999999999999999999999999999999876431110 01111110111122222333333 6666554 3
Q ss_pred eeeEeC----CCCEEEEEeec-CccccCCCceeEeeccEEEEecCC-CcCCCCCCCccc-cccccCCHHHHHHHHHHHHH
Q 018704 140 CAGIDT----DNHVVHCETVT-DELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVKE-NATFLREVHHAQEIRRKLLL 212 (351)
Q Consensus 140 v~~i~~----~~~~v~~~~~~-~~~~~~~~~~~~~~~d~lviAtG~-~p~~p~i~g~~~-~~~~~~~~~~~~~~~~~~~~ 212 (351)
+..++. ....+...... ++. .+.||+||||||+ .|+.|++||.+. .++.. ......+......
T Consensus 91 v~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~--~~~~~~~~~~~~~ 160 (352)
T PRK12770 91 VCCGEPLHEEEGDEFVERIVSLEEL--------VKKYDAVLIATGTWKSRKLGIPGEDLPGVYSA--LEYLFRIRAAKLG 160 (352)
T ss_pred EeeccccccccccccccccCCHHHH--------HhhCCEEEEEeCCCCCCcCCCCCccccCceeH--HHHHHHhhhcccc
Confidence 333322 11111111000 111 4789999999999 488899998752 23221 1111111110000
Q ss_pred hhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCCCCCCCcHHHHHHHH
Q 018704 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEILSSFDDRLRHYAT 291 (351)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~l~~~~~~~~~~~~ 291 (351)
.+.....| ...+++++|||+|++|+|+|..|...+ .+ |+++++...... .......
T Consensus 161 ~~~~~~~~------~~~g~~vvViG~G~~g~e~A~~l~~~g--------------~~~Vtvi~~~~~~~~---~~~~~~~ 217 (352)
T PRK12770 161 YLPWEKVP------PVEGKKVVVVGAGLTAVDAALEAVLLG--------------AEKVYLAYRRTINEA---PAGKYEI 217 (352)
T ss_pred cccccccc------ccCCCEEEEECCCHHHHHHHHHHHHcC--------------CCeEEEEeecchhhC---CCCHHHH
Confidence 00011111 123569999999999999999998765 54 999988642211 1113344
Q ss_pred HHhhhcCcEEEcCe-EEEEeCC----eEEec--------------------CCcEEeccEEEEecCCCCc-ccccc-CCC
Q 018704 292 TQLSKSGVRLVRGI-VKDVDSQ----KLILN--------------------DGTEVPYGLLVWSTGVGPS-TLVKS-LDL 344 (351)
Q Consensus 292 ~~l~~~gV~~~~~~-v~~v~~~----~v~~~--------------------~g~~~~~D~vi~a~G~~p~-~~~~~-~gl 344 (351)
+.|+++||+++++. +++++++ .+.+. ++.++++|.||+++|++|+ .+..+ +|+
T Consensus 218 ~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~ 297 (352)
T PRK12770 218 ERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGI 297 (352)
T ss_pred HHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCc
Confidence 56889999999994 8888642 22221 2346999999999999999 56555 677
Q ss_pred CCCCCC
Q 018704 345 PKSPGG 350 (351)
Q Consensus 345 ~~~~~G 350 (351)
+++++|
T Consensus 298 ~~~~~g 303 (352)
T PRK12770 298 ELNRKG 303 (352)
T ss_pred eecCCC
Confidence 766554
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-23 Score=195.35 Aligned_cols=285 Identities=16% Similarity=0.177 Sum_probs=166.5
Q ss_pred cccccCCCCCCCCCcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcC
Q 018704 14 KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
.|++.|..... -.++....++++..++.... .+...........++|+||||||+||++|..|++.|++|+|+|+
T Consensus 98 ~Ce~~C~~~~~-~~~v~i~~l~r~~~~~~~~~----~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~ 172 (467)
T TIGR01318 98 LCEGACTLNDE-FGAVTIGNLERYITDTALAM----GWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDR 172 (467)
T ss_pred ChHHhCcCCCC-CCCccHHHHHHHHHHHHHHh----CCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 45556655432 23455677777776644321 11111111223568999999999999999999999999999999
Q ss_pred CCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccE
Q 018704 94 RNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDK 173 (351)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~ 173 (351)
.+..... + ..+.+.+. +...+...........++.++...... ..+.+ ++. ...||+
T Consensus 173 ~~~~gG~--l---~~gip~~~-~~~~~~~~~~~~~~~~Gv~~~~~~~v~-----~~~~~----~~~--------~~~~D~ 229 (467)
T TIGR01318 173 HPEIGGL--L---TFGIPSFK-LDKAVLSRRREIFTAMGIEFHLNCEVG-----RDISL----DDL--------LEDYDA 229 (467)
T ss_pred CCCCCce--e---eecCcccc-CCHHHHHHHHHHHHHCCCEEECCCEeC-----CccCH----HHH--------HhcCCE
Confidence 8764211 0 01222221 112222222223334466665432111 11111 111 357999
Q ss_pred EEEecCCCc-CCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHH
Q 018704 174 LVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD 251 (351)
Q Consensus 174 lviAtG~~p-~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~ 251 (351)
||+|||+.+ +.+++||.+ +++++. .++........ +.....+.. ......+++++|||+|++|+|+|..+.+
T Consensus 230 vilAtGa~~~~~~~i~g~~~~gV~~a---~~~l~~~~~~~--~~~~~~~~~-~~~~~~gk~VvVIGgG~~a~d~A~~a~~ 303 (467)
T TIGR01318 230 VFLGVGTYRSMRGGLPGEDAPGVLQA---LPFLIANTRQL--MGLPESPEE-PLIDVEGKRVVVLGGGDTAMDCVRTAIR 303 (467)
T ss_pred EEEEeCCCCCCcCCCCCcCCCCcEEH---HHHHHHHHHHh--cCCCccccc-cccccCCCEEEEECCcHHHHHHHHHHHH
Confidence 999999986 456899875 233321 11111101100 001100000 0011245799999999999999999888
Q ss_pred HHHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---Ce---EEec-----
Q 018704 252 FIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---QK---LILN----- 317 (351)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~~---v~~~----- 317 (351)
++. .+|++++|.. .++..+.++ +.+++.||+++++. ++++.. +. |++.
T Consensus 304 ~Ga-------------~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 365 (467)
T TIGR01318 304 LGA-------------ASVTCAYRRDEANMPGSRREV-----ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALG 365 (467)
T ss_pred cCC-------------CeEEEEEecCcccCCCCHHHH-----HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEec
Confidence 762 4799999863 345444332 34567899999995 878753 12 2321
Q ss_pred ----CC-----------cEEeccEEEEecCCCCc--cccccCCCCCCCCC
Q 018704 318 ----DG-----------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGG 350 (351)
Q Consensus 318 ----~g-----------~~~~~D~vi~a~G~~p~--~~~~~~gl~~~~~G 350 (351)
+| .++++|.||+|+|+.|+ .+++.++++++++|
T Consensus 366 ~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g 415 (467)
T TIGR01318 366 EPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWG 415 (467)
T ss_pred ccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCC
Confidence 12 36899999999999998 57777788887766
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=201.01 Aligned_cols=272 Identities=16% Similarity=0.170 Sum_probs=162.7
Q ss_pred CcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhh
Q 018704 27 SNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST 106 (351)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~ 106 (351)
..+....++++..+++... .+...........++|+||||||+||++|..|++.|++|+|+|+.+..... .
T Consensus 279 ~~v~i~~l~r~~~d~~~~~----~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~-----l 349 (639)
T PRK12809 279 GAVSIGNLERYITDTALAM----GWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM-----L 349 (639)
T ss_pred CCcChhHHHHHHHHHHHHh----CCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCe-----e
Confidence 3456677777777654321 121211112234689999999999999999999999999999998764211 1
Q ss_pred hcccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCC
Q 018704 107 CVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTF 185 (351)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p 185 (351)
..+.+.+. +...+.+.........++.++.....+. .+.+ . .. ...||+||+|||+. ++.+
T Consensus 350 ~~gip~~~-l~~~~~~~~~~~~~~~Gv~~~~~~~v~~-----~~~~---~-~l--------~~~~DaV~latGa~~~~~~ 411 (639)
T PRK12809 350 TFGIPPFK-LDKTVLSQRREIFTAMGIDFHLNCEIGR-----DITF---S-DL--------TSEYDAVFIGVGTYGMMRA 411 (639)
T ss_pred eccCCccc-CCHHHHHHHHHHHHHCCeEEEcCCccCC-----cCCH---H-HH--------HhcCCEEEEeCCCCCCCCC
Confidence 11233322 2222222222333445777655432211 1111 1 11 45799999999997 5567
Q ss_pred CCCCccc-cccccCCHHHHHHHHHHHHHhh-hccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcC
Q 018704 186 GIHGVKE-NATFLREVHHAQEIRRKLLLNL-MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (351)
Q Consensus 186 ~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~ 263 (351)
++||.+. .++. +..+.....+.. ..... .........+|+|+|||+|++|+|+|..+.++|.
T Consensus 412 ~i~g~~~~gv~~------a~~~l~~~~~~~~~~~~~-~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga--------- 475 (639)
T PRK12809 412 DLPHEDAPGVIQ------ALPFLTAHTRQLMGLPES-EEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNA--------- 475 (639)
T ss_pred CCCCCccCCcEe------HHHHHHHHHHhhccCccc-cccccccCCCCeEEEECCcHHHHHHHHHHHHcCC---------
Confidence 8888752 2222 111111110000 01000 0000112346799999999999999998887762
Q ss_pred CCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---CeE---Ee---c------CC------
Q 018704 264 VKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---QKL---IL---N------DG------ 319 (351)
Q Consensus 264 ~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~~v---~~---~------~g------ 319 (351)
.+|++++|+. .++..+.++ ..+++.||+++++. ++++.. +.| .+ . +|
T Consensus 476 ----~~Vt~v~rr~~~~~~~~~~e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~ 546 (639)
T PRK12809 476 ----ASVTCAYRRDEVSMPGSRKEV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRP 546 (639)
T ss_pred ----CeEEEeeecCcccCCCCHHHH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCcccee
Confidence 4799999863 244443333 23567899999995 777752 222 22 1 22
Q ss_pred -----cEEeccEEEEecCCCCc--cccccCCCCCCCCC
Q 018704 320 -----TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGG 350 (351)
Q Consensus 320 -----~~~~~D~vi~a~G~~p~--~~~~~~gl~~~~~G 350 (351)
.++++|.||+|+|+.|+ .+++.+|++++++|
T Consensus 547 ~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G 584 (639)
T PRK12809 547 VAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWG 584 (639)
T ss_pred cCCceEEEECCEEEECcCCCCCccccccccCcccCCCC
Confidence 25899999999999997 57788888888766
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=187.55 Aligned_cols=247 Identities=21% Similarity=0.229 Sum_probs=141.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEe
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
..++|+|||||++||++|..|++.|++|+|||+.+..... + ..+.+.+. +...+...........++.++....
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~--l---~~gip~~~-~~~~~~~~~~~~~~~~Gv~~~~~~~ 215 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGL--L---MYGIPNMK-LDKAIVDRRIDLLSAEGIDFVTNTE 215 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCce--e---eccCCCcc-CCHHHHHHHHHHHHhCCCEEECCCE
Confidence 4579999999999999999999999999999988764211 0 01122211 1111211111223334777665543
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
...+... +.. ...||+||+|||+. |+.+++||.+ +.++.. ..+.....+......
T Consensus 216 v~~~~~~---------~~~--------~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~------~~~l~~~~~~~~~~~ 272 (485)
T TIGR01317 216 IGVDISA---------DEL--------KEQFDAVVLAGGATKPRDLPIPGRELKGIHYA------MEFLPSATKALLGKD 272 (485)
T ss_pred eCCccCH---------HHH--------HhhCCEEEEccCCCCCCcCCCCCcCCCCcEeH------HHHHHHHhhhhcccc
Confidence 3221110 111 46799999999998 8999999975 233321 111111100000000
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC-C---------CCCcHH--H
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-L---------SSFDDR--L 286 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-l---------~~~~~~--~ 286 (351)
. .........+|+|+|||||++|+|+|..+.+++. .+|+++++.+. + +.++.. .
T Consensus 273 ~-~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga-------------~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~ 338 (485)
T TIGR01317 273 F-KDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGA-------------ASVHQFEIMPKPPEARAKDNPWPEWPRVYRV 338 (485)
T ss_pred c-cccccccCCCCEEEEECCcHHHHHHHHHHHHcCC-------------CEEEEEEecCCChhhcccccCCCccchhhhh
Confidence 0 0000011345799999999999999988887662 57999987531 1 111111 1
Q ss_pred HHHHHHHhhhcCcEE-EcC-eEEEEeC---C---eEE-----e---cCCc-----------EEeccEEEEecCCC-Cc-c
Q 018704 287 RHYATTQLSKSGVRL-VRG-IVKDVDS---Q---KLI-----L---NDGT-----------EVPYGLLVWSTGVG-PS-T 337 (351)
Q Consensus 287 ~~~~~~~l~~~gV~~-~~~-~v~~v~~---~---~v~-----~---~~g~-----------~~~~D~vi~a~G~~-p~-~ 337 (351)
....++.++..||.+ +++ .++++.. + ++. + ++|+ ++++|.||+|+|+. |+ .
T Consensus 339 ~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~ 418 (485)
T TIGR01317 339 DYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQI 418 (485)
T ss_pred HHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccc
Confidence 122333344456543 333 2555432 1 122 1 1332 69999999999996 77 7
Q ss_pred ccccCCCCCCCCC
Q 018704 338 LVKSLDLPKSPGG 350 (351)
Q Consensus 338 ~~~~~gl~~~~~G 350 (351)
+++.+|++++++|
T Consensus 419 ~~~~~gl~~~~~G 431 (485)
T TIGR01317 419 LLDDFGVKKTRRG 431 (485)
T ss_pred cccccCcccCCCC
Confidence 8888899887766
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=184.52 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=94.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhc--cCceEEEEcCCCccccchhhhhhhccc-ccccccccchhccchhhhcCCCeEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGT-LEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
..++|+|||||||||+||..|++ .|++|+|||+.+..... + ..+. +++. ....+......+....++.++.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl--v---r~gvaP~~~-~~k~v~~~~~~~~~~~~v~~~~ 98 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL--V---RSGVAPDHP-ETKNVTNQFSRVATDDRVSFFG 98 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce--E---eeccCCCcc-hhHHHHHHHHHHHHHCCeEEEc
Confidence 45789999999999999999986 79999999998764211 1 1111 2222 1122222222334445676665
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCc-CCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhh
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p-~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (351)
....+ +.+.+. +- ...||+||+|||+.+ +.++|||.+ ++++... .+..++....+
T Consensus 99 nv~vg-----~dvtl~---~L---------~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~------~fl~~~ng~~d 155 (491)
T PLN02852 99 NVTLG-----RDVSLS---EL---------RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAR------EFVWWYNGHPD 155 (491)
T ss_pred CEEEC-----ccccHH---HH---------hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHH------HHHHHhhcchh
Confidence 32222 222221 11 447999999999985 788999975 3334322 22222211000
Q ss_pred ccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHH
Q 018704 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF 252 (351)
Q Consensus 216 ~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~ 252 (351)
..... .....+++|+|||+|++|+|+|..|.+.
T Consensus 156 ~~~~~----~~~~~gk~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 156 CVHLP----PDLKSSDTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred hhhhh----hcccCCCEEEEECCCHHHHHHHHHHHhC
Confidence 00000 0012457999999999999999999874
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-21 Score=189.86 Aligned_cols=168 Identities=15% Similarity=0.184 Sum_probs=91.2
Q ss_pred CCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc--------------ccchhhhhhh---c-cccccc---ccc
Q 018704 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM--------------VFTPLLASTC---V-GTLEFR---SVA 117 (351)
Q Consensus 59 ~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~--------------~~~~~~~~~~---~-~~~~~~---~~~ 117 (351)
....++|+|||||||||+||++|++.|++|+++|+.+.. .|.+++.... . |...+. .+.
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~ 459 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWD 459 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccch
Confidence 346789999999999999999999999999999985421 1111111111 1 111111 111
Q ss_pred cchhccch-hhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC-CcCCCCCCCccc-cc
Q 018704 118 EPIARIQP-AISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVKE-NA 194 (351)
Q Consensus 118 ~~~~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~p~~p~i~g~~~-~~ 194 (351)
....+... .+....++.++.+...+.+.+...+ ....||+||||||+ .|+.+++||.+. ++
T Consensus 460 k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl----------------~~~gyDAV~IATGA~kpr~L~IPGeda~GV 523 (1028)
T PRK06567 460 KNNLDILRLILERNNNFKYYDGVALDFNITKEQA----------------FDLGFDHIAFCIGAGQPKVLDIENFEAKGV 523 (1028)
T ss_pred HHHHHHHHHHHhcCCceEEECCeEECccCCHHHH----------------hhcCCCEEEEeCCCCCCCCCCCCCccCCCe
Confidence 11111111 1122234555444333222221111 14679999999999 599999999752 23
Q ss_pred cccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHH
Q 018704 195 TFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD 251 (351)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~ 251 (351)
+. ..++....+... .+..... .....+++|+|||||++|+|+|.....
T Consensus 524 ~s---A~DfL~~l~~~~-~~~~~~~-----~~~~~Gk~VVVIGGGnTAmD~ArtAlr 571 (1028)
T PRK06567 524 KT---ASDFLMTLQSGG-AFLKNSN-----TNMVIRMPIAVIGGGLTSLDAATESLY 571 (1028)
T ss_pred EE---HHHHHHHHhhcc-ccccccc-----CcccCCCCEEEEcCcHHHHHHHHHHHh
Confidence 32 222211111100 0000000 001234689999999999999995543
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-21 Score=180.54 Aligned_cols=234 Identities=15% Similarity=0.160 Sum_probs=150.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhh--------h-----------hhcccccc---cc---
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA--------S-----------TCVGTLEF---RS--- 115 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~--------~-----------~~~~~~~~---~~--- 115 (351)
+.++|+|||||+|||++|+.|.+.|++++|+|+.+.....+... . .+.+.+++ ..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 45899999999999999999999999999999887663321111 1 11111111 00
Q ss_pred ---cccchhccchhhhcCCCe---EEEEEEeeeEeCCC-CEEEEEeecCccccCCCceeEeeccEEEEecCCC--cCCCC
Q 018704 116 ---VAEPIARIQPAISREPGS---YFFLSHCAGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIALGAE--ASTFG 186 (351)
Q Consensus 116 ---~~~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~-~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~--p~~p~ 186 (351)
-...+.++...++...++ ..++.+|..++... ..|.+...+.+.. ....-||.|++|||.. |+.|.
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~-----~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ-----IEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc-----eeEEEeeEEEEcccCcCCCCCCc
Confidence 011233333444444443 34566778888777 5777765444320 2378899999999976 89998
Q ss_pred CCCc--c---ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhh
Q 018704 187 IHGV--K---ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261 (351)
Q Consensus 187 i~g~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~ 261 (351)
++|. + ...+++.++..... -..|+|+|||+|+||+|++.+++..+
T Consensus 160 ~~g~~~~~f~G~~iHS~~Yk~~e~----------------------f~~k~VlVIG~g~SG~DIs~d~~~~a-------- 209 (448)
T KOG1399|consen 160 IPGPGIESFKGKIIHSHDYKSPEK----------------------FRDKVVLVVGCGNSGMDISLDLLRVA-------- 209 (448)
T ss_pred CCCCchhhcCCcceehhhccCccc----------------------ccCceEEEECCCccHHHHHHHHHHhc--------
Confidence 8883 2 23455555543333 33469999999999999999988766
Q ss_pred cCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEEEeCCeEEe-cCCcEEeccEEEEecCCCCc-ccc
Q 018704 262 SHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL-NDGTEVPYGLLVWSTGVGPS-TLV 339 (351)
Q Consensus 262 ~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~-~~g~~~~~D~vi~a~G~~p~-~~~ 339 (351)
.+|++..+..... ... ......++..+.. |+.+++++..+ +++....+|.+|+|||+.-. +|+
T Consensus 210 ------k~v~~~~~~~~~~---~~~-----~~~~~~~~~~~~~-i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl 274 (448)
T KOG1399|consen 210 ------KEVHLSVVSPKVH---VEP-----PEILGENLWQVPS-IKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFL 274 (448)
T ss_pred ------cCcceeeeccccc---ccc-----cceeecceEEccc-cccccCcceEEEcCceeEEeeeEEEeeeeEeeccee
Confidence 5666654310000 000 0001123444444 77788887555 55666789999999999988 888
Q ss_pred ccCCC
Q 018704 340 KSLDL 344 (351)
Q Consensus 340 ~~~gl 344 (351)
+..++
T Consensus 275 ~~~~~ 279 (448)
T KOG1399|consen 275 ETLGL 279 (448)
T ss_pred ccCCc
Confidence 87653
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-21 Score=187.58 Aligned_cols=233 Identities=18% Similarity=0.215 Sum_probs=134.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
...++|+|||+|++|+++|..|++.|++|+|+|+.+....... .+.+.+......+..... .....++.++...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~-----~~i~~~~~~~~~~~~~~~-~~~~~gv~~~~~~ 354 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR-----YGIPSYRLPDEALDKDIA-FIEALGVKIHLNT 354 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe-----ecCCcccCCHHHHHHHHH-HHHHCCcEEECCC
Confidence 4567999999999999999999999999999998775421110 111111111111111122 2233466665443
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCccc-cccccCCHHHHHHHHHHHHHhhhcc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
....+ +.. +.. ...||+||+|||+. |+.+++||.+. +++. ..+....+...+.. ..
T Consensus 355 ~v~~~-----~~~----~~~--------~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~--a~~~l~~~~~~~~~---~~ 412 (604)
T PRK13984 355 RVGKD-----IPL----EEL--------REKHDAVFLSTGFTLGRSTRIPGTDHPDVIQ--ALPLLREIRDYLRG---EG 412 (604)
T ss_pred EeCCc-----CCH----HHH--------HhcCCEEEEEcCcCCCccCCCCCcCCcCeEe--HHHHHHHHHhhhcc---CC
Confidence 22211 111 111 45799999999987 78889999752 2222 22222222222110 00
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC---CCCCCcHHHHHHHHHHh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE---ILSSFDDRLRHYATTQL 294 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~l~~~~~~~~~~~~~~l 294 (351)
.. ...+++|+|||||++|+|+|..+.+++.. .+ ...+|+++...+ .++....+ +.+ +
T Consensus 413 ~~-------~~~~k~VvVIGGG~~g~e~A~~l~r~~~~----~~----g~~~V~v~~~~r~~~~~~~~~~e----~~~-~ 472 (604)
T PRK13984 413 PK-------PKIPRSLVVIGGGNVAMDIARSMARLQKM----EY----GEVNVKVTSLERTFEEMPADMEE----IEE-G 472 (604)
T ss_pred Cc-------CCCCCcEEEECCchHHHHHHHHHHhcccc----cc----CceEEEEeccccCcccCCCCHHH----HHH-H
Confidence 00 02246999999999999999999876410 00 014677764332 23322222 222 3
Q ss_pred hhcCcEEEcCe-EEEEeC--C---eEEec--------CC-----------cEEeccEEEEecCCCCc-cccc
Q 018704 295 SKSGVRLVRGI-VKDVDS--Q---KLILN--------DG-----------TEVPYGLLVWSTGVGPS-TLVK 340 (351)
Q Consensus 295 ~~~gV~~~~~~-v~~v~~--~---~v~~~--------~g-----------~~~~~D~vi~a~G~~p~-~~~~ 340 (351)
.+.||+++++. ++++.. + +|++. +| .++++|.||+|+|+.|+ .++.
T Consensus 473 ~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~ 544 (604)
T PRK13984 473 LEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLP 544 (604)
T ss_pred HHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhh
Confidence 45799999884 666542 1 22221 12 36999999999999998 5553
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-20 Score=163.94 Aligned_cols=233 Identities=18% Similarity=0.207 Sum_probs=147.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEE-cCCCcc-ccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCV-SPRNHM-VFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vi-e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
...+||+||||||||-+||.+.+|.|.+.-++ |+-.-- .-+..+.+. .+.+.-. ...+....+...+...+...+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENf-Isv~~te--Gpkl~~ale~Hv~~Y~vDimn 285 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENF-ISVPETE--GPKLAAALEAHVKQYDVDVMN 285 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhhe-ecccccc--chHHHHHHHHHHhhcCchhhh
Confidence 45689999999999999999999999986444 331100 000000000 0011100 011111111111222333332
Q ss_pred E-EeeeEeC---CCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccc-------cccccCCHHHHHHH
Q 018704 138 S-HCAGIDT---DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE-------NATFLREVHHAQEI 206 (351)
Q Consensus 138 ~-~v~~i~~---~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~-------~~~~~~~~~~~~~~ 206 (351)
. .+.++.+ ....+.+ .+.+|. .+.++.+|+|||++.+..++||.++ +|.+++..
T Consensus 286 ~qra~~l~~a~~~~~l~ev-~l~nGa--------vLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGP------ 350 (520)
T COG3634 286 LQRASKLEPAAVEGGLIEV-ELANGA--------VLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP------ 350 (520)
T ss_pred hhhhhcceecCCCCccEEE-EecCCc--------eeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCc------
Confidence 2 3333333 2223333 335666 8999999999999999999999863 22222221
Q ss_pred HHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHH
Q 018704 207 RRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRL 286 (351)
Q Consensus 207 ~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~ 286 (351)
+ -++|+|+|||||+||+|.|..|+..- .+||+++-.+.+ ..
T Consensus 351 ---L-----------------F~gK~VAVIGGGNSGvEAAIDLAGiv--------------~hVtllEF~~eL-----kA 391 (520)
T COG3634 351 ---L-----------------FKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEL-----KA 391 (520)
T ss_pred ---c-----------------cCCceEEEECCCcchHHHHHhHHhhh--------------heeeeeecchhh-----hh
Confidence 1 35579999999999999999999887 899999876443 23
Q ss_pred HHHHHHHhhhc-CcEEEcCe-EEEEeCC-----eEEecC---C--cEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 287 RHYATTQLSKS-GVRLVRGI-VKDVDSQ-----KLILND---G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 287 ~~~~~~~l~~~-gV~~~~~~-v~~v~~~-----~v~~~~---g--~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
-+.+++.+... +|.++.+. -+++.++ ++...| | ..++-+.|++-+|..|| +|++.. ++++++|
T Consensus 392 D~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rG 467 (520)
T COG3634 392 DAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRG 467 (520)
T ss_pred HHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCc
Confidence 34556666554 89999994 7788764 444432 3 34778999999999999 999986 7777666
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-19 Score=157.10 Aligned_cols=251 Identities=20% Similarity=0.316 Sum_probs=175.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhc--cCceEEEEcCCCccccc-hhhhhhhc--cc------ccccccccchhccc-----
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFT-PLLASTCV--GT------LEFRSVAEPIARIQ----- 124 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~~~~~~~-~~~~~~~~--~~------~~~~~~~~~~~~~~----- 124 (351)
.+...+|||+|.+..+++..... .+.+|.+|..++.++|. |-+..-.. +. ..+..|.-..+.+.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 45678999999999999888765 67789999988777664 22221111 10 11111111000000
Q ss_pred -------hhhhcCCCeEEEEE-EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC-CCc----c
Q 018704 125 -------PAISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI-HGV----K 191 (351)
Q Consensus 125 -------~~~~~~~~~~~~~~-~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i-~g~----~ 191 (351)
---....++-..++ +|..||...+.+.+ .+|. +|.||.++||||..|+...+ ... .
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~L---nDG~--------~I~YdkcLIATG~~Pk~l~~~~~A~~evk 325 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVIL---NDGT--------TIGYDKCLIATGVRPKKLQVFEEASEEVK 325 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEe---cCCc--------EeehhheeeecCcCcccchhhhhcCHHhh
Confidence 00112234445554 89999999999877 5777 99999999999999887632 221 1
Q ss_pred ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 018704 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (351)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~ 271 (351)
+.+..++...++..+..-+ ...++|.|||+|..|.|+|+.|.+... ..+.+|+
T Consensus 326 ~kit~fr~p~DF~rlek~~-----------------aek~siTIiGnGflgSELacsl~rk~r----------~~g~eV~ 378 (659)
T KOG1346|consen 326 QKITYFRYPADFKRLEKGL-----------------AEKQSITIIGNGFLGSELACSLKRKYR----------NEGVEVH 378 (659)
T ss_pred hheeEEecchHHHHHHHhh-----------------hhcceEEEEcCcchhhhHHHHHHHhhh----------ccCcEEE
Confidence 4556677777777766544 122599999999999999999987641 2457787
Q ss_pred EEeCC--CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC----CeEEecCCcEEeccEEEEecCCCCc-cccccCC
Q 018704 272 LIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS----QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLD 343 (351)
Q Consensus 272 ~~~~~--~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~----~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~g 343 (351)
-+-.. .+-..++.-+.++..+.++..||.++.+. |.++.. -.+.++||+++..|+||+|+|-.|| ++++..|
T Consensus 379 QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sg 458 (659)
T KOG1346|consen 379 QVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASG 458 (659)
T ss_pred EeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccccc
Confidence 66553 22233456788888889999999999995 776643 2567789999999999999999999 8999999
Q ss_pred CCCCCC
Q 018704 344 LPKSPG 349 (351)
Q Consensus 344 l~~~~~ 349 (351)
|++|+.
T Consensus 459 LeiD~~ 464 (659)
T KOG1346|consen 459 LEIDEK 464 (659)
T ss_pred ceeecc
Confidence 999865
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=163.21 Aligned_cols=229 Identities=25% Similarity=0.316 Sum_probs=168.7
Q ss_pred EEEECCchhHHHHHHhhhc--cCceEEEEcCCCccccc--hhhhhhhcccccccccccchhccchhhhcCCCeE-EEEEE
Q 018704 65 VVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSY-FFLSH 139 (351)
Q Consensus 65 VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 139 (351)
++|||+|++|+++|..|++ .+.+++++..++...|. +.......+......+..... +....++. +....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~ 75 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-----FNRATGIDVRTGTE 75 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-----hHHhhCCEEeeCCE
Confidence 5899999999999999988 45568877776655443 222222222222221111111 11222444 44468
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDV 219 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (351)
|+.+|...+.+.+. ++ .+.||++|+|||+.|..++ .......+..+...+...+.+...
T Consensus 76 v~~id~~~~~v~~~---~g---------~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------- 134 (415)
T COG0446 76 VTSIDPENKVVLLD---DG---------EIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAE-------- 134 (415)
T ss_pred EEEecCCCCEEEEC---CC---------cccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHh--------
Confidence 99999999999873 22 6899999999999999886 221245677888888888777642
Q ss_pred CCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCc-HHHHHHHHHHhhhc
Q 018704 220 PGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFD-DRLRHYATTQLSKS 297 (351)
Q Consensus 220 p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~-~~~~~~~~~~l~~~ 297 (351)
..++++|||+|..|+++|..+.+.| .+|++++.. ++++.+. +.+.+.+.+.++..
T Consensus 135 ---------~~~~v~vvG~G~~gle~A~~~~~~G--------------~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (415)
T COG0446 135 ---------PPKDVVVVGAGPIGLEAAEAAAKRG--------------KKVTLIEAADRLGGQLLDPEVAEELAELLEKY 191 (415)
T ss_pred ---------ccCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEcccccchhhhhHHHHHHHHHHHHHC
Confidence 1359999999999999999999887 999999997 4555555 78899999999999
Q ss_pred CcEEEcCe-EEEEeCCe-------EEecCCcEEeccEEEEecCCCCc-cccccC
Q 018704 298 GVRLVRGI-VKDVDSQK-------LILNDGTEVPYGLLVWSTGVGPS-TLVKSL 342 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~-------v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~ 342 (351)
||+++.+. +.+++... +...++..+++|.+++++|.+|+ .+....
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~ 245 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDA 245 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhC
Confidence 99999995 89987642 57778889999999999999998 555544
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-20 Score=167.46 Aligned_cols=178 Identities=14% Similarity=0.093 Sum_probs=101.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCccccchhh--hhhhcccc---------------------------
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVFTPLL--ASTCVGTL--------------------------- 111 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~~~~~~~~--~~~~~~~~--------------------------- 111 (351)
.+|+++||.||++|+.|..|...+ .+++++|+++.+.|++.+ .+.....+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 379999999999999999998865 899999999998887533 22222111
Q ss_pred -------cccccccchhccchhhhcCCCe-EEEEEEeeeEeCCCC----EEEEEee-cCccccCCCceeEeeccEEEEec
Q 018704 112 -------EFRSVAEPIARIQPAISREPGS-YFFLSHCAGIDTDNH----VVHCETV-TDELRTLEPWKFKISYDKLVIAL 178 (351)
Q Consensus 112 -------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~----~v~~~~~-~~~~~~~~~~~~~~~~d~lviAt 178 (351)
.+......+.++..+.+..... ..+..+|+.|++... .+.+.+. .+|. ...+.+++||+||
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~------~~~~~ar~vVla~ 155 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGD------GETYRARNVVLAT 155 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-------EEEEEESEEEE--
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCC------eeEEEeCeEEECc
Confidence 0111122223333334433333 455678999887553 3665542 2232 3489999999999
Q ss_pred CCCcCCCCCCC-c--cccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHH
Q 018704 179 GAEASTFGIHG-V--KENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR 255 (351)
Q Consensus 179 G~~p~~p~i~g-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~ 255 (351)
|..|.+|.+-. . .+.++++.++...... ....++|+|||||.||+|++..|.+.+
T Consensus 156 G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~--------------------~~~~~~V~VVGgGQSAAEi~~~L~~~~-- 213 (341)
T PF13434_consen 156 GGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQ--------------------SLAGKRVAVVGGGQSAAEIFLDLLRRG-- 213 (341)
T ss_dssp --EE---GGGGGGTT-TTEEEGGGHHHHHT-------------------------EEEEEE-SSHHHHHHHHHHHHH---
T ss_pred CCCCCCCcchhhcCCCCCEEEehHhhhcccc--------------------ccCCCeEEEECCcHhHHHHHHHHHhCC--
Confidence 98898885332 2 1456666555443211 134469999999999999999998765
Q ss_pred HHHhhhcCCCCccEEEEEeCCC
Q 018704 256 DVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 256 ~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
+..+|+++.|+.
T Consensus 214 ----------~~~~V~~i~R~~ 225 (341)
T PF13434_consen 214 ----------PEAKVTWISRSP 225 (341)
T ss_dssp ----------TTEEEEEEESSS
T ss_pred ----------CCcEEEEEECCC
Confidence 227899999974
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-19 Score=176.30 Aligned_cols=232 Identities=18% Similarity=0.172 Sum_probs=138.7
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
....+|+|||+||+||++|..|++.|++|+|+|+.+...... ..+.+.+......+..... .....++.+....
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l-----~~gip~~~~~~~~~~~~l~-~~~~~Gv~~~~~~ 208 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMM-----RYGIPAYRLPREVLDAEIQ-RILDLGVEVRLGV 208 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCee-----eecCCCccCCHHHHHHHHH-HHHHCCCEEEeCC
Confidence 456799999999999999999999999999999887643211 1122222111111111112 2223455544332
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCcccc-ccccCCHHHHHHHHHHHHHhhhcc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVKEN-ATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
..+.+... +.. ...||.||+|||+. +..+.+++.+.. .+. ...+...... ..
T Consensus 209 ~~~~~~~~---------~~~--------~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~------~~~~l~~~~~---~~ 262 (564)
T PRK12771 209 RVGEDITL---------EQL--------EGEFDAVFVAIGAQLGKRLPIPGEDAAGVLD------AVDFLRAVGE---GE 262 (564)
T ss_pred EECCcCCH---------HHH--------HhhCCEEEEeeCCCCCCcCCCCCCccCCcEE------HHHHHHHhhc---cC
Confidence 11111100 001 34599999999987 455678875421 111 1111111100 00
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHHHHHhh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLS 295 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~~~~l~ 295 (351)
....+++++|||+|++|+|++..+.+++. .+|+++++.. .++.....+ +.+.
T Consensus 263 --------~~~~gk~v~ViGgg~~a~d~a~~a~~lga-------------~~v~ii~r~~~~~~~~~~~~~-----~~a~ 316 (564)
T PRK12771 263 --------PPFLGKRVVVIGGGNTAMDAARTARRLGA-------------EEVTIVYRRTREDMPAHDEEI-----EEAL 316 (564)
T ss_pred --------CcCCCCCEEEECChHHHHHHHHHHHHcCC-------------CEEEEEEecCcccCCCCHHHH-----HHHH
Confidence 01235699999999999999988877652 5789988863 334333332 2345
Q ss_pred hcCcEEEcCe-EEEEeCC--e--------EEe----cCC---------cEEeccEEEEecCCCCc-ccccc-CCCCCCCC
Q 018704 296 KSGVRLVRGI-VKDVDSQ--K--------LIL----NDG---------TEVPYGLLVWSTGVGPS-TLVKS-LDLPKSPG 349 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~~--~--------v~~----~~g---------~~~~~D~vi~a~G~~p~-~~~~~-~gl~~~~~ 349 (351)
+.||+++++. +.++..+ + +.+ .+| .++++|.||+|+|+.|+ +++++ .+++ +++
T Consensus 317 ~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~ 395 (564)
T PRK12771 317 REGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGR 395 (564)
T ss_pred HcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCC
Confidence 6799999984 8787542 1 111 122 36899999999999999 77775 4665 555
Q ss_pred C
Q 018704 350 G 350 (351)
Q Consensus 350 G 350 (351)
|
T Consensus 396 G 396 (564)
T PRK12771 396 G 396 (564)
T ss_pred C
Confidence 5
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.3e-20 Score=173.06 Aligned_cols=175 Identities=18% Similarity=0.169 Sum_probs=114.3
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCce-EEEEcCCCccccch---hhhhhhcc-------cc-----------cccccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTP---LLASTCVG-------TL-----------EFRSVA 117 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~~~~~~~---~~~~~~~~-------~~-----------~~~~~~ 117 (351)
.+.+||+|||||++||++|+.|.++|.+ ++|+|++......+ ...+.+.. .+ .+....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 4568999999999999999999999999 99999987553221 11111111 00 000011
Q ss_pred cchhccchhhhcCCCeEEEE-EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC--CcCCCCCCCccc--
Q 018704 118 EPIARIQPAISREPGSYFFL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHGVKE-- 192 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~p~~p~i~g~~~-- 192 (351)
..+..+.+.+.....+.+.. .++...+.+.+.|.++...++. .++.+|+||+|||. .|+.|.++|.++
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~-------~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~ 158 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT-------GELTADFVVVATGHLSEPYIPDFAGLDEFK 158 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe-------eeEecCEEEEeecCCCCCCCCCCCCccCCC
Confidence 12222222222222222222 2444445555678876543332 12779999999996 499999999873
Q ss_pred -cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 018704 193 -NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (351)
Q Consensus 193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~ 271 (351)
..+|..++.+... -++|+|+|||+|+||++++.+|...+ .+|+
T Consensus 159 g~~~HS~~~~~~~~----------------------~~GKrV~VIG~GaSA~di~~~l~~~g--------------a~vt 202 (443)
T COG2072 159 GRILHSADWPNPED----------------------LRGKRVLVIGAGASAVDIAPELAEVG--------------ASVT 202 (443)
T ss_pred ceEEchhcCCCccc----------------------cCCCeEEEECCCccHHHHHHHHHhcC--------------CeeE
Confidence 3455555554444 34469999999999999999999877 8999
Q ss_pred EEeCCC
Q 018704 272 LIEANE 277 (351)
Q Consensus 272 ~~~~~~ 277 (351)
+++|+.
T Consensus 203 ~~qRs~ 208 (443)
T COG2072 203 LSQRSP 208 (443)
T ss_pred EEecCC
Confidence 999974
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-20 Score=159.52 Aligned_cols=167 Identities=21% Similarity=0.208 Sum_probs=95.9
Q ss_pred EEECCchhHHHHHHhhhccCce-EEEEcCCCccccchh------------hhhhhcccccc----------------ccc
Q 018704 66 VVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTPL------------LASTCVGTLEF----------------RSV 116 (351)
Q Consensus 66 vIIG~G~aGl~aA~~L~~~g~~-v~vie~~~~~~~~~~------------~~~~~~~~~~~----------------~~~ 116 (351)
+||||||+||++|.+|.+.|.+ ++|||+++....... ......+...+ ...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 7999999999999999999999 999998855421110 00000000000 001
Q ss_pred ccchhccchhhhcCCCeEE-EEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC--CcCCCCCCC-ccc
Q 018704 117 AEPIARIQPAISREPGSYF-FLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHG-VKE 192 (351)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~p~~p~i~g-~~~ 192 (351)
...+.++...+....+..+ ...+|+++..+.+.|.++. .++. ++.+|+||+|||. .|+.|.+|| ...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~-~~~~--------~~~a~~VVlAtG~~~~p~~p~~~g~~~~ 151 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTT-RDGR--------TIRADRVVLATGHYSHPRIPDIPGSAFR 151 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEE-TTS---------EEEEEEEEE---SSCSB---S-TTGGCS
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEE-Eecc--------eeeeeeEEEeeeccCCCCcccccccccc
Confidence 1112233333333444433 4468899988877787765 4444 8899999999996 699999999 434
Q ss_pred cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEE
Q 018704 193 NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTL 272 (351)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~ 272 (351)
..++...+.+... ...|+|+|||+|+||+|++..|.+.+ .+|++
T Consensus 152 ~~~h~~~~~~~~~----------------------~~~k~V~VVG~G~SA~d~a~~l~~~g--------------~~V~~ 195 (203)
T PF13738_consen 152 PIIHSADWRDPED----------------------FKGKRVVVVGGGNSAVDIAYALAKAG--------------KSVTL 195 (203)
T ss_dssp EEEEGGG-STTGG----------------------CTTSEEEEE--SHHHHHHHHHHTTTC--------------SEEEE
T ss_pred ceEehhhcCChhh----------------------cCCCcEEEEcChHHHHHHHHHHHhhC--------------CEEEE
Confidence 4444433322211 34469999999999999999999876 89999
Q ss_pred EeCCC
Q 018704 273 IEANE 277 (351)
Q Consensus 273 ~~~~~ 277 (351)
+.|.+
T Consensus 196 ~~R~~ 200 (203)
T PF13738_consen 196 VTRSP 200 (203)
T ss_dssp EESS-
T ss_pred EecCC
Confidence 99974
|
... |
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=163.93 Aligned_cols=244 Identities=18% Similarity=0.191 Sum_probs=150.1
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
.+..+|+|||||||||+||..|++.|++|+++|+.+..... ...|.+.+. +...+.+..-.+....++.|....
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl-----l~yGIP~~k-l~k~i~d~~i~~l~~~Gv~~~~~~ 194 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL-----LLYGIPDFK-LPKDILDRRLELLERSGVEFKLNV 194 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCcee-----EEecCchhh-ccchHHHHHHHHHHHcCeEEEEcc
Confidence 44589999999999999999999999999999997764211 222455554 333444444444455568887665
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhc-
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML- 216 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (351)
..+.+.....+ ...||++++|||+. |+..++||.+ +++. .+..+...+......
T Consensus 195 ~vG~~it~~~L-----------------~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~------~A~dfL~~~~~~~~~~ 251 (457)
T COG0493 195 RVGRDITLEEL-----------------LKEYDAVFLATGAGKPRPLDIPGEDAKGVA------FALDFLTRLNKEVLGD 251 (457)
T ss_pred eECCcCCHHHH-----------------HHhhCEEEEeccccCCCCCCCCCcCCCcch------HHHHHHHHHHHHHhcc
Confidence 55443332222 34569999999986 9999999975 2333 333333222211111
Q ss_pred ---cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC--C-CCCCCcHHHHHHH
Q 018704 217 ---SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--E-ILSSFDDRLRHYA 290 (351)
Q Consensus 217 ---~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~l~~~~~~~~~~~ 290 (351)
...|. ..+|+|+|||||++++|++....++|. ..|+.+++. + -....+.......
T Consensus 252 ~~~~~~~~------~~gk~vvVIGgG~Ta~D~~~t~~r~Ga-------------~~v~~~~~~~~~~~~~~~~~~~~~~~ 312 (457)
T COG0493 252 FAEDRTPP------AKGKRVVVIGGGDTAMDCAGTALRLGA-------------KSVTCFYREDRDDETNEWPTWAAQLE 312 (457)
T ss_pred cccccCCC------CCCCeEEEECCCCCHHHHHHHHhhcCC-------------eEEEEeccccccccCCcccccchhhh
Confidence 12231 334799999999999999999888884 578888643 1 1121222223444
Q ss_pred HHHhhhcCcEEEcC-eEEEEeC-----------CeEEec--------------CC--cEEeccEEEEecCCCCc--ccc-
Q 018704 291 TTQLSKSGVRLVRG-IVKDVDS-----------QKLILN--------------DG--TEVPYGLLVWSTGVGPS--TLV- 339 (351)
Q Consensus 291 ~~~l~~~gV~~~~~-~v~~v~~-----------~~v~~~--------------~g--~~~~~D~vi~a~G~~p~--~~~- 339 (351)
.+.+.+.|+..+.. .-.++.. ..+... .| ..+++|.|+.|+|+.++ .+.
T Consensus 313 ~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~ 392 (457)
T COG0493 313 VRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLL 392 (457)
T ss_pred hhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccc
Confidence 56667777766654 2333321 122111 12 24789999999999988 322
Q ss_pred ccCCCCCCCCCC
Q 018704 340 KSLDLPKSPGGR 351 (351)
Q Consensus 340 ~~~gl~~~~~G~ 351 (351)
...++..+++|+
T Consensus 393 ~~~~~~~~~~g~ 404 (457)
T COG0493 393 LEFGLKLDKRGR 404 (457)
T ss_pred cccccccCCCCc
Confidence 222566666663
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.8e-19 Score=170.97 Aligned_cols=215 Identities=20% Similarity=0.203 Sum_probs=133.4
Q ss_pred cccccccCcccccccCCCCCCCCCcceeccccccccCCCCCccccccccCCCCCCCCCCCcEEEECCchhHHHHHHhhhc
Q 018704 4 FKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDT 83 (351)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIG~G~aGl~aA~~L~~ 83 (351)
.+|-=+..-+.|.-.|... ...++....+.+...-+++-. ..|...-++...+.++|.|||+|||||+||.+|.+
T Consensus 1732 peftgrvcpapcegactlg-iie~pv~iksie~aiid~af~----egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk 1806 (2142)
T KOG0399|consen 1732 PEFTGRVCPAPCEGACTLG-IIEPPVGIKSIECAIIDKAFE----EGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNK 1806 (2142)
T ss_pred ccccCccCCCCcCcceeee-cccCCccccchhhHHHHHHHH----hcCCccCCcccccCcEEEEEccCchhhhHHHHHhh
Confidence 3333444445555555333 233344556666665555443 23323333344667999999999999999999999
Q ss_pred cCceEEEEcCCCccccchhhhhhh-cccccccccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccC
Q 018704 84 SLYDVVCVSPRNHMVFTPLLASTC-VGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162 (351)
Q Consensus 84 ~g~~v~vie~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~ 162 (351)
.|+.|+|+|+.++.. +.. .|.+.. .+.+.+.+.+-.+....++.|+...-.+-+ +.+ ++-
T Consensus 1807 ~gh~v~vyer~dr~g------gll~ygipnm-kldk~vv~rrv~ll~~egi~f~tn~eigk~-----vs~----d~l--- 1867 (2142)
T KOG0399|consen 1807 AGHTVTVYERSDRVG------GLLMYGIPNM-KLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-----VSL----DEL--- 1867 (2142)
T ss_pred cCcEEEEEEecCCcC------ceeeecCCcc-chhHHHHHHHHHHHHhhCceEEeecccccc-----ccH----HHH---
Confidence 999999999988743 222 233333 344445555555666678888765444322 322 222
Q ss_pred CCceeEeeccEEEEecCCC-cCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChH
Q 018704 163 EPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241 (351)
Q Consensus 163 ~~~~~~~~~d~lviAtG~~-p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~ 241 (351)
.-.+|+||+|+|+. |+.+++||-+- ..+..+.++.++-...+-.+..-+. -...++|+|+|||||++
T Consensus 1868 -----~~~~daiv~a~gst~prdlpv~grd~-----kgv~fame~l~~ntk~lld~~~d~~--~~~~~gkkvivigggdt 1935 (2142)
T KOG0399|consen 1868 -----KKENDAIVLATGSTTPRDLPVPGRDL-----KGVHFAMEFLEKNTKSLLDSVLDGN--YISAKGKKVIVIGGGDT 1935 (2142)
T ss_pred -----hhccCeEEEEeCCCCCcCCCCCCccc-----cccHHHHHHHHHhHHhhhccccccc--eeccCCCeEEEECCCCc
Confidence 56799999999986 99999999752 2333444444433222222222111 11245689999999999
Q ss_pred HHHHHHHHHHHHH
Q 018704 242 GVEFSGELSDFIM 254 (351)
Q Consensus 242 a~e~a~~l~~~~~ 254 (351)
|-|+...-.+.|+
T Consensus 1936 g~dcigtsvrhg~ 1948 (2142)
T KOG0399|consen 1936 GTDCIGTSVRHGC 1948 (2142)
T ss_pred cccccccchhhcc
Confidence 9999998888775
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.9e-17 Score=145.18 Aligned_cols=252 Identities=15% Similarity=0.152 Sum_probs=148.2
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCccccchhh--hhhhcccc-------------------------
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVFTPLL--ASTCVGTL------------------------- 111 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~~~~~~~~--~~~~~~~~------------------------- 111 (351)
+...|++.||-||+-|+.|..|...+ .+...+|+++.+.|+|.. .+.....+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 45689999999999999999999855 789999999999888432 22111111
Q ss_pred ---------cccccccchhccchhhhcCCCeEEEEEEee---eEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 112 ---------EFRSVAEPIARIQPAISREPGSYFFLSHCA---GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
.+........++..+.+.......+..+|+ .++.+..........++. ++.+++||+++|
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~--------~y~ar~lVlg~G 154 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGT--------VYRARNLVLGVG 154 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCc--------EEEeeeEEEccC
Confidence 000111122222222333333333456777 455554443222223444 899999999999
Q ss_pred CCcCCCC-CCCcc-ccccccCCHHH-HHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHH
Q 018704 180 AEASTFG-IHGVK-ENATFLREVHH-AQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (351)
Q Consensus 180 ~~p~~p~-i~g~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~ 256 (351)
.+|.+|+ +..+. +.+++...+.+ ..++ ...++|+|||+|.||+|+-..|..-.
T Consensus 155 ~~P~IP~~f~~l~~~~vfHss~~~~~~~~~---------------------~~~~~V~ViG~GQSAAEi~~~Ll~~~--- 210 (436)
T COG3486 155 TQPYIPPCFRSLIGERVFHSSEYLERHPEL---------------------LQKRSVTVIGSGQSAAEIFLDLLNSQ--- 210 (436)
T ss_pred CCcCCChHHhCcCccceeehHHHHHhhHHh---------------------hcCceEEEEcCCccHHHHHHHHHhCC---
Confidence 9999983 22221 45665444321 1111 12235999999999999988876421
Q ss_pred HHhhhcCCCCccEEEEEeCCC-CCCC---------C-----------cH-------------------HHHHHHHHHhh-
Q 018704 257 VRQRYSHVKDYIHVTLIEANE-ILSS---------F-----------DD-------------------RLRHYATTQLS- 295 (351)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~~-~l~~---------~-----------~~-------------------~~~~~~~~~l~- 295 (351)
+. ...++.++.|+. ++|. + ++ +....+.+.|.
T Consensus 211 -----~~--~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~ 283 (436)
T COG3486 211 -----PP--QDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYE 283 (436)
T ss_pred -----CC--cCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHH
Confidence 11 113578888863 2221 1 11 11222222222
Q ss_pred ------hcCcEEEcC-eEEEEeCCe---EEec-------CCcEEeccEEEEecCCCCc--cccccCC--CCCCCCC
Q 018704 296 ------KSGVRLVRG-IVKDVDSQK---LILN-------DGTEVPYGLLVWSTGVGPS--TLVKSLD--LPKSPGG 350 (351)
Q Consensus 296 ------~~gV~~~~~-~v~~v~~~~---v~~~-------~g~~~~~D~vi~a~G~~p~--~~~~~~g--l~~~~~G 350 (351)
+..|.++.+ +|..++..+ +.+. +..+++.|.||+|||++.. +|++.+. |..|++|
T Consensus 284 ~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g 359 (436)
T COG3486 284 QSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDG 359 (436)
T ss_pred HHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccC
Confidence 345777877 488887632 4441 2346899999999999966 4777653 4445544
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-14 Score=131.67 Aligned_cols=174 Identities=22% Similarity=0.338 Sum_probs=97.2
Q ss_pred CceeEeeccEEEEecCCCcCCCCCCCccccccc-cCCHHHHHHHHHHHHHhhhccCCCC--CCHhhhcccCeEEE---EC
Q 018704 164 PWKFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPG--ISEEEKSRLLHCVV---VG 237 (351)
Q Consensus 164 ~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~v~V---vG 237 (351)
++..++....+|+|||-.+..+.-.. +..+. +.++-...++-+.+..+ +..-| ..+...+..|+|+. ||
T Consensus 294 ~e~ve~~vGaIIvAtGy~~~Da~~k~--EyGYG~~~nVIT~lElErml~~~---GPT~GkvlrpSdg~~pKrVaFIqCVG 368 (622)
T COG1148 294 PEEVELEVGAIIVATGYKPFDATRKE--EYGYGKYPNVITNLELERMLNPN---GPTGGKVLRPSDGKPPKRVAFIQCVG 368 (622)
T ss_pred CcEEEEEeceEEEEccccccCcchhh--hcCCCCCcchhhHHHHHHHhccC---CCCCceEEecCCCCCCceEEEEEEec
Confidence 34568899999999998876653221 11111 11222223333222100 00000 11223344567776 46
Q ss_pred CCh--------HHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEEE
Q 018704 238 GGP--------TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (351)
Q Consensus 238 gG~--------~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~v 309 (351)
+-+ |-+-++..|.+ +..++++||. .+|++++-+- +.++....+...+.-++.||+++.|++.++
T Consensus 369 SRD~~~~n~YCSrvCCm~slKq--A~~Ike~~Pd----~~v~I~YmDi--RafG~~yEefY~~~Q~~~gV~fIRGrvaei 440 (622)
T COG1148 369 SRDFQVGNPYCSRVCCMVSLKQ--AQLIKERYPD----TDVTIYYMDI--RAFGKDYEEFYVRSQEDYGVRFIRGRVAEI 440 (622)
T ss_pred CcCcccCChhhHHHHHHHHHhh--hhhhhhcCCC----cceeEEEEEe--eccCccHHHHHHhhhhhhchhhhcCChHHh
Confidence 554 33334434433 4567777877 8899887752 222222223333333367999999975555
Q ss_pred e---CCe--EEecC---C--cEEeccEEEEecCCCCc----cccccCCCCCCCCC
Q 018704 310 D---SQK--LILND---G--TEVPYGLLVWSTGVGPS----TLVKSLDLPKSPGG 350 (351)
Q Consensus 310 ~---~~~--v~~~~---g--~~~~~D~vi~a~G~~p~----~~~~~~gl~~~~~G 350 (351)
. +++ |..+| | .++++|+||+++|+.|. .+.+.|||+.+++|
T Consensus 441 ~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~g 495 (622)
T COG1148 441 AEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDG 495 (622)
T ss_pred eeCCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCC
Confidence 3 344 33332 3 36889999999999986 46677899998877
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-15 Score=138.65 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=32.9
Q ss_pred CCCcEEEECCchhHHHHHHhhh-ccCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGID-TSLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~-~~g~~v~vie~~~~~~ 98 (351)
..++|+|||||||||+||.+|. +.|++|+|+|+.+...
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 3578999999999999999864 6899999999988753
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=126.43 Aligned_cols=251 Identities=16% Similarity=0.213 Sum_probs=164.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhc-cCc-eEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT-SLY-DVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~-~g~-~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
.+++|+|||||.+|+++|..+.+ .+. +|.|+|+.+.+.|.|.+.-...|......-.....+..+ .+..|+..
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP-----~~a~wi~e 112 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIP-----KGATWIKE 112 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCccccccc-----CCcHHHHH
Confidence 56899999999999999999976 443 699999999999999887766665444333333333322 24666778
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-----ccccccCCHHHHHHHHHHHHHh
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-----ENATFLREVHHAQEIRRKLLLN 213 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-----~~~~~~~~~~~~~~~~~~~~~~ 213 (351)
+|...+++.+.+.+ ++|+ +|+||++|||+|.+-++-.|+|+- +.+.+..+.......-..+..
T Consensus 113 kv~~f~P~~N~v~t---~gg~--------eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~- 180 (446)
T KOG3851|consen 113 KVKEFNPDKNTVVT---RGGE--------EISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMN- 180 (446)
T ss_pred HHHhcCCCcCeEEc---cCCc--------EEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHh-
Confidence 89999999999987 4677 999999999999987777788774 455555565555555444421
Q ss_pred hhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCc-HHHHHHHHH
Q 018704 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD-DRLRHYATT 292 (351)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~-~~~~~~~~~ 292 (351)
| +.+.-+--.-.+++-|--|.+-.-+..++++++... + .++.++..-.+..-|+ ....+.+++
T Consensus 181 f-------------k~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gv-R--d~a~iiy~Tsl~~iFgVk~Y~~AL~k 244 (446)
T KOG3851|consen 181 F-------------KKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGV-R--DNANIIYNTSLPTIFGVKHYADALEK 244 (446)
T ss_pred c-------------cCCceEEecCCCccccCCCchhhhhhhHHHHHHhCc-c--ccccEEEecCccceecHHHHHHHHHH
Confidence 1 222233334444444433333333334444444322 2 3455555533322333 456678888
Q ss_pred HhhhcCcEEEcCe-EEEEeCC--eEEec---C-C--cEEeccEEEEecCCCCccccccCCC
Q 018704 293 QLSKSGVRLVRGI-VKDVDSQ--KLILN---D-G--TEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 293 ~l~~~gV~~~~~~-v~~v~~~--~v~~~---~-g--~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
..++++|++...+ ..+|..+ ..+++ + | .+++++++-+.+...+.+++....+
T Consensus 245 ~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~ 305 (446)
T KOG3851|consen 245 VIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDL 305 (446)
T ss_pred HHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCcc
Confidence 8899999998875 7777653 23332 2 4 3588999999998888766665543
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=121.03 Aligned_cols=160 Identities=21% Similarity=0.300 Sum_probs=108.7
Q ss_pred cEEEECCchhHHHHHHhhhc--cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCe---EEEEE
Q 018704 64 RVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGS---YFFLS 138 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 138 (351)
+.+|||||+||.+||..|+. ...+++|+...+..-...++-... ...+.+++.+.- ....+- .++..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~-~ylekfdv~eq~-------~~elg~~f~~~~~~ 72 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIG-QYLEKFDVKEQN-------CHELGPDFRRFLND 72 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHH-HHHHhcCccccc-------hhhhcccHHHHHHh
Confidence 36899999999999999987 556899988755432111111110 000111110000 000111 12233
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
|..++.+++.+++ .+|. ++.|++|++|||..|.... .|.++.+...++.+.+..++.++
T Consensus 73 -v~~~~s~ehci~t---~~g~--------~~ky~kKOG~tg~kPklq~-E~~n~~Iv~irDtDsaQllq~kl-------- 131 (334)
T KOG2755|consen 73 -VVTWDSSEHCIHT---QNGE--------KLKYFKLCLCTGYKPKLQV-EGINPKIVGIRDTDSAQLLQCKL-------- 131 (334)
T ss_pred -hhhhccccceEEe---cCCc--------eeeEEEEEEecCCCcceee-cCCCceEEEEecCcHHHHHHHHH--------
Confidence 7778888888877 4666 9999999999999998763 33557778888898888888887
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.++|.|.++|.|-+++|++.++.. .+|++...++
T Consensus 132 ---------~kaK~VlilgnGgia~El~yElk~----------------~nv~w~ikd~ 165 (334)
T KOG2755|consen 132 ---------VKAKIVLILGNGGIAMELTYELKI----------------LNVTWKIKDE 165 (334)
T ss_pred ---------hhcceEEEEecCchhHHHHHHhhc----------------ceeEEEecch
Confidence 677899999999999999999875 6677776654
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-15 Score=128.55 Aligned_cols=149 Identities=26% Similarity=0.306 Sum_probs=94.5
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch-hhhh-hhcccccccccccchh--ccchhhhcCCCeEE-EEE
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP-LLAS-TCVGTLEFRSVAEPIA--RIQPAISREPGSYF-FLS 138 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~ 138 (351)
||||||||+|||+||.+|++.+.+++|+|+.+...+.. .+.. ................ .+.+.+ ...++.+ +..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQL-KNRGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHH-HHHTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccccccccccccccccccccccccccccccc-ccceEEEeecc
Confidence 79999999999999999999999999999877654321 1111 1000000000000000 111111 2245666 567
Q ss_pred EeeeEeCCCCEE-----EEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHh
Q 018704 139 HCAGIDTDNHVV-----HCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN 213 (351)
Q Consensus 139 ~v~~i~~~~~~v-----~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (351)
++..++...+.+ .......+. ..++.||+||+|||..|++|.+||. +.......+.++..+.+..
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~--- 149 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVETGD------GREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFLELL--- 149 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEETTT------EEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHHTHS---
T ss_pred ccccccccccccccCcccceeeccCC------ceEecCCeeeecCccccceeecCCC-ccccccccccccccccccc---
Confidence 889999888853 221111111 2389999999999999999999997 3445557777777777654
Q ss_pred hhccCCCCCCHhhhcccCeEEEEC
Q 018704 214 LMLSDVPGISEEEKSRLLHCVVVG 237 (351)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~v~VvG 237 (351)
...++++|||
T Consensus 150 --------------~~~~~v~VvG 159 (201)
T PF07992_consen 150 --------------ESPKRVAVVG 159 (201)
T ss_dssp --------------STTSEEEEES
T ss_pred --------------cccccccccc
Confidence 2234999999
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=121.55 Aligned_cols=180 Identities=19% Similarity=0.180 Sum_probs=103.4
Q ss_pred CcEEEECCchhHHHHHHhhhc--cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEe
Q 018704 63 PRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
++|+|||+||||+.+|..|.+ .+++|+|+|+.+....- .-++.....++.......+... ++.....|+..--
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL-vRyGVAPDHpEvKnvintFt~~----aE~~rfsf~gNv~ 95 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL-VRYGVAPDHPEVKNVINTFTKT----AEHERFSFFGNVK 95 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccce-eeeccCCCCcchhhHHHHHHHH----hhccceEEEecce
Confidence 589999999999999999977 57899999997753211 0112222222222222222222 2223333332211
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
. +..+.+..+ +-.||+||+|+|+. ++.++|||.+ ..++ .+.++.++. ..
T Consensus 96 v-----G~dvsl~eL------------~~~ydavvLaYGa~~dR~L~IPGe~l~~V~------Sarefv~Wy------ng 146 (468)
T KOG1800|consen 96 V-----GRDVSLKEL------------TDNYDAVVLAYGADGDRRLDIPGEELSGVI------SAREFVGWY------NG 146 (468)
T ss_pred e-----cccccHHHH------------hhcccEEEEEecCCCCcccCCCCcccccce------ehhhhhhhc------cC
Confidence 1 122322221 56799999999987 9999999975 2232 445555553 22
Q ss_pred CCCCC-HhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHH-hhhc-------CCCCccEEEEEeCC
Q 018704 219 VPGIS-EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR-QRYS-------HVKDYIHVTLIEAN 276 (351)
Q Consensus 219 ~p~~~-~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~-~~~~-------~~~~~~~v~~~~~~ 276 (351)
.|... .+....+.+|+|||.|++++|+|+.|........+ ..++ ...+-.+|+++-|+
T Consensus 147 ~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRR 213 (468)
T KOG1800|consen 147 LPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRR 213 (468)
T ss_pred CCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEecc
Confidence 23211 01112356999999999999999999763321110 0111 11244678888875
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.7e-12 Score=112.87 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=59.9
Q ss_pred cEEEEEeCCCCCCC--CcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecC--CCCc--
Q 018704 268 IHVTLIEANEILSS--FDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTG--VGPS-- 336 (351)
Q Consensus 268 ~~v~~~~~~~~l~~--~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G--~~p~-- 336 (351)
+..+.=+.+++.|. -...+.+.+...+++.||+++++. |.+++.+ .+.+.+|.++.||.+|+|+| ..|.
T Consensus 93 i~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~lG 172 (408)
T COG2081 93 IALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKLG 172 (408)
T ss_pred CeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCCC
Confidence 44444444466554 236788999999999999999995 9999765 45567888899999999999 5662
Q ss_pred ------cccccCCCCCC
Q 018704 337 ------TLVKSLDLPKS 347 (351)
Q Consensus 337 ------~~~~~~gl~~~ 347 (351)
++++++|+++.
T Consensus 173 stg~gy~iA~~~G~~I~ 189 (408)
T COG2081 173 STGFGYPIARQFGHTIT 189 (408)
T ss_pred CCchhhHHHHHcCCccc
Confidence 57777777653
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=87.53 Aligned_cols=74 Identities=34% Similarity=0.577 Sum_probs=65.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEE
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v 309 (351)
+++|||||++|+|+|..|.+++ .+|+++++++ +++.+++++.+.+.+.+++.||+++++. ++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--------------~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--------------KEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC--------------cEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 5899999999999999999887 9999999984 6688999999999999999999999995 9988
Q ss_pred eC--Ce--EEecCC
Q 018704 310 DS--QK--LILNDG 319 (351)
Q Consensus 310 ~~--~~--v~~~~g 319 (351)
+. ++ |.++||
T Consensus 67 ~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 67 EKDGDGVEVTLEDG 80 (80)
T ss_dssp EEETTSEEEEEETS
T ss_pred EEeCCEEEEEEecC
Confidence 75 34 777776
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-10 Score=106.14 Aligned_cols=176 Identities=14% Similarity=0.093 Sum_probs=101.1
Q ss_pred CcEEEECCchhHHHHHHhhhc---cCceEEEEcCCCcc----ccchhhhhhh-----------------------ccc--
Q 018704 63 PRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHM----VFTPLLASTC-----------------------VGT-- 110 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~~~----~~~~~~~~~~-----------------------~~~-- 110 (351)
++|+|||+|++|+.+|.+|.+ ....+.|||+.+.+ .|.+..+... .+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 689999999999999999976 22239999977654 2221111000 000
Q ss_pred ---------------ccccccccchhccchhhhcCCC---eEEEEEEeeeEeCC--CCEEEEEeecCccccCCCceeEee
Q 018704 111 ---------------LEFRSVAEPIARIQPAISREPG---SYFFLSHCAGIDTD--NHVVHCETVTDELRTLEPWKFKIS 170 (351)
Q Consensus 111 ---------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~~--~~~v~~~~~~~~~~~~~~~~~~~~ 170 (351)
+...-+..++.+....+..... +.++..+++++..+ ...+.+. ..+|. ...
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~-~~~g~--------~~~ 152 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVT-TADGP--------SEI 152 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEe-cCCCC--------eee
Confidence 0001112223333333333333 67778888888776 3344443 35666 889
Q ss_pred ccEEEEecCCCcCCCCCCCcc--ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHH
Q 018704 171 YDKLVIALGAEASTFGIHGVK--ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGE 248 (351)
Q Consensus 171 ~d~lviAtG~~p~~p~i~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~ 248 (351)
+|-+|+|||..+-++..-..+ +..-.+.+......+.+ .+..-+|+|+|+|.+-+|....
T Consensus 153 ad~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~------------------v~~~drVli~GsgLt~~D~v~~ 214 (474)
T COG4529 153 ADIIVLATGHSAPPADPAARDLKGSPRLIADPYPANALDG------------------VDADDRVLIVGSGLTSIDQVLV 214 (474)
T ss_pred eeEEEEeccCCCCCcchhhhccCCCcceeccccCCccccc------------------ccCCCceEEecCCchhHHHHHH
Confidence 999999999864444321111 00001111111111111 1222379999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 249 LSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
|.+.| ++..+|++.|..
T Consensus 215 l~~~g------------h~g~It~iSRrG 231 (474)
T COG4529 215 LRRRG------------HKGPITAISRRG 231 (474)
T ss_pred HhccC------------CccceEEEeccc
Confidence 98755 347888888853
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-10 Score=108.26 Aligned_cols=185 Identities=12% Similarity=0.081 Sum_probs=100.9
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCcc----ccchhh--hhhhcc-------------------------
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHM----VFTPLL--ASTCVG------------------------- 109 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~----~~~~~~--~~~~~~------------------------- 109 (351)
++|+||||||+|+++|..|.+. .++|+|||++..+ .|.+.- ......
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 5899999999999999999764 4589999986543 233210 000000
Q ss_pred --------------cccccccccchhccchhhhc---CCC--eEEE-EEEeeeEeCCCCEEEEEeecCccccCCCceeEe
Q 018704 110 --------------TLEFRSVAEPIARIQPAISR---EPG--SYFF-LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKI 169 (351)
Q Consensus 110 --------------~~~~~~~~~~~~~~~~~~~~---~~~--~~~~-~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~ 169 (351)
.+....+..++.+....+.. ..+ +.++ ..+|+.++.....+.+...+++. .+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~--------~i 153 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLP--------SE 153 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCe--------EE
Confidence 00000111222222222211 112 3444 45899998887777775433344 78
Q ss_pred eccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHH
Q 018704 170 SYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGEL 249 (351)
Q Consensus 170 ~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l 249 (351)
.+|+||+|||..+..+ .++. . .+. ...+.... +..+| ..+|+|+|.|-+++|++..|
T Consensus 154 ~aD~VVLAtGh~~p~~-~~~~-~-~yi-~~pw~~~~----------~~~i~---------~~~V~I~GtGLt~iD~v~~L 210 (534)
T PRK09897 154 TFDLAVIATGHVWPDE-EEAT-R-TYF-PSPWSGLM----------EAKVD---------ACNVGIMGTSLSGLDAAMAV 210 (534)
T ss_pred EcCEEEECCCCCCCCC-Chhh-c-ccc-CCCCcchh----------hcCCC---------CCeEEEECCCHHHHHHHHHH
Confidence 9999999999753111 1111 1 111 11111100 01111 24999999999999999999
Q ss_pred HHHHHH-------HHHhhhcCCCCccEEEEEeCCCC
Q 018704 250 SDFIMR-------DVRQRYSHVKDYIHVTLIEANEI 278 (351)
Q Consensus 250 ~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~ 278 (351)
...+.. .+.-.|.......+++++-|+.+
T Consensus 211 t~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 211 AIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred HhcCCceeccCCCcceeeecCCCCCceEEEEeCCCC
Confidence 854210 00011122235568888888643
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-10 Score=105.65 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHhhhcCcEEEcCe-EEEEe--CCe---EEecCCcEEeccEEEEecCCCCc----------cccccCCCC
Q 018704 283 DDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQK---LILNDGTEVPYGLLVWSTGVGPS----------TLVKSLDLP 345 (351)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~~~~~~-v~~v~--~~~---v~~~~g~~~~~D~vi~a~G~~p~----------~~~~~~gl~ 345 (351)
..++.+.+.+.+++.||++++++ |.++. +++ |.++++.++.||.||+|+|-... .|++.+|..
T Consensus 108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~ 186 (409)
T PF03486_consen 108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHT 186 (409)
T ss_dssp HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCc
Confidence 36778889999999999999995 99885 344 56667788999999999985432 356666654
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=100.22 Aligned_cols=86 Identities=19% Similarity=0.297 Sum_probs=58.2
Q ss_pred HHHhhhcCCCCccEEEEEeCCC-CCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeC--C---eEEecCCcEEeccEEE
Q 018704 256 DVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLV 328 (351)
Q Consensus 256 ~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~---~v~~~~g~~~~~D~vi 328 (351)
++.+.+|...+...-.+..... .+ .+..+.+.+.+.+++.|++++.+ +|+++.. + +|.+.+|+ +.+|.||
T Consensus 120 ~~~~~~p~~~~~~~~~~~~~~~g~i--~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV 196 (358)
T PF01266_consen 120 ELRELFPFLNPRIEGGVFFPEGGVI--DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVV 196 (358)
T ss_dssp HHHHHSTTSSTTTEEEEEETTEEEE--EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEE
T ss_pred hhhhhhcccccchhhhhcccccccc--cccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeE
Confidence 3444455544444444544432 11 24678888889999999999999 5998863 3 37788887 9999999
Q ss_pred EecCCCCccccccCCC
Q 018704 329 WSTGVGPSTLVKSLDL 344 (351)
Q Consensus 329 ~a~G~~p~~~~~~~gl 344 (351)
+|+|.+...++..+++
T Consensus 197 ~a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 197 LAAGAWSPQLLPLLGL 212 (358)
T ss_dssp E--GGGHHHHHHTTTT
T ss_pred ecccccceeeeecccc
Confidence 9999887777776665
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=103.50 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=73.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhh---hh--cc--------cccc-------------
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---TC--VG--------TLEF------------- 113 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~---~~--~~--------~~~~------------- 113 (351)
...+||+||||||||+++|..|++.|++|+|+|+.+...+...+.. .. .+ ....
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 3458999999999999999999999999999998764433211100 00 00 0000
Q ss_pred ccc----ccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 114 RSV----AEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 114 ~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..+ ...+.+.........++.+...+|+.++.+...+.+.. ++|. ++.+|.||.|+|......
T Consensus 106 ~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~-~dG~--------~i~A~lVI~AdG~~s~l~ 172 (447)
T PLN02463 106 RPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVC-DDGV--------KIQASLVLDATGFSRCLV 172 (447)
T ss_pred CcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEE-CCCC--------EEEcCEEEECcCCCcCcc
Confidence 000 00011111111123467787889999988777666544 4565 899999999999875543
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-09 Score=97.09 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcE-EeccEEEEecCCCCccccccCCCCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTE-VPYGLLVWSTGVGPSTLVKSLDLPKS 347 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~-~~~D~vi~a~G~~p~~~~~~~gl~~~ 347 (351)
.++...+.+.++++|++++.++ |++++. + .+.+.+|++ ++|+.||.|.|.-...++...|++.+
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~ 223 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPED 223 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcc
Confidence 4567778888888899999994 998864 4 344567766 99999999999988888888777653
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=97.90 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhh----cC--cEEEcCe-EEEEeCC-----eEEecCCcEEeccEEEEecCCCCccccccCCCC
Q 018704 284 DRLRHYATTQLSK----SG--VRLVRGI-VKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (351)
Q Consensus 284 ~~~~~~~~~~l~~----~g--V~~~~~~-v~~v~~~-----~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~ 345 (351)
..+...+.+.+++ .| ++++.++ |++++.+ .|.+.+| ++.+|.||+|+|.+...++..+|+.
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~ 283 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYG 283 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCC
Confidence 4667778888888 67 8899984 9888642 3555666 6999999999998888777777664
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-09 Score=98.68 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=65.7
Q ss_pred EEECCChHHHHHH-HHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEe
Q 018704 234 VVVGGGPTGVEFS-GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD 310 (351)
Q Consensus 234 ~VvGgG~~a~e~a-~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~ 310 (351)
+|++.+.+|+|.+ ..+.++.. .-+.+|+++... +.++.. ++.+.+.+.+++.|++++.+. |.+++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~----------~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~ 286 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEE----------ALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAE 286 (422)
T ss_pred EEEECceecCCChHHHHHHHHH----------HHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 6788899999998 55543210 012899999876 355543 788889999999999999994 88875
Q ss_pred C--CeEE---ecCCc--EEeccEEEEecCCCCc
Q 018704 311 S--QKLI---LNDGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 311 ~--~~v~---~~~g~--~~~~D~vi~a~G~~p~ 336 (351)
. +++. ..+|+ .+++|.||+|+|..+.
T Consensus 287 ~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 287 FEGGRVTAVWTRNHGDIPLRARHFVLATGSFFS 319 (422)
T ss_pred EeCCEEEEEEeeCCceEEEECCEEEEeCCCccc
Confidence 3 3332 33443 4899999999998766
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=94.73 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhc-CcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCccccc
Q 018704 284 DRLRHYATTQLSKS-GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVK 340 (351)
Q Consensus 284 ~~~~~~~~~~l~~~-gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 340 (351)
..+...+.+.+.+. |++++.++ |.+++.+.|.+.+|. +.||.||+|+|...+.++.
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g~-i~a~~VV~A~G~~s~~l~~ 202 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETGTVRTSRGD-VHADQVFVCPGADFETLFP 202 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecCeEEeCCCc-EEeCEEEECCCCChhhhCc
Confidence 45666777777665 99999984 999987778887774 7899999999987665443
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.5e-08 Score=90.31 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecCCcEEeccEEEEecCCCCccccccCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
..+.+.+.+.+++.|++++.++ |.+++. +. |.+.+| ++.+|.||+|+|.+...+...+|+
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~ 209 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGI 209 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhccc
Confidence 4566777788888999999994 888864 32 444555 799999999999876655555543
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.9e-09 Score=94.04 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=32.5
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+||+|||||++|+++|+.|++.|++|+|+|+....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 58999999999999999999999999999988653
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.3e-09 Score=97.67 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=35.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~ 100 (351)
+++||+||||||||++||+.|++.|++|+|+|+++...+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k 41 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAK 41 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCC
Confidence 4689999999999999999999999999999988765443
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.6e-08 Score=92.24 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+++.|++++.+. |++++. + .+++++|.++.+|.||.|.|..+.
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 556666777778899999994 888754 3 356678888999999999999885
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.9e-08 Score=92.06 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhcCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCccccccCCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~ 345 (351)
..+.+.+.+.+++.|++++.+ +|.+++. + .|.+.+| ++.+|.||+|+|.+...+++.+|++
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 577888888899999999999 4888753 3 3455555 7999999999999887666665554
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.7e-09 Score=95.62 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=67.7
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEc-CCCccccc---hhhhhhhcc---------------------c--------
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVS-PRNHMVFT---PLLASTCVG---------------------T-------- 110 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie-~~~~~~~~---~~~~~~~~~---------------------~-------- 110 (351)
||+|||||+||+.||+.+++.|++|+|+. ..+.+... |.+.+...+ .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 79999999999999999999999999993 22222111 111111100 0
Q ss_pred --cccccc------ccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC
Q 018704 111 --LEFRSV------AEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (351)
Q Consensus 111 --~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 180 (351)
+..... ...-......+...+++.++..+|+.+..+.+.+.--...+|. .+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~--------~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGE--------EIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSE--------EEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCC--------EEecCEEEEeccc
Confidence 111111 0111222334556688999999999999887776544446776 9999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.1e-08 Score=90.33 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhcCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCccccccCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~g 343 (351)
..+...+.+.+.+.|++++.+ +|+++.. + .+.+.+| ++.+|.||+|+|.+...++..++
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~~ 212 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDLLPPLE 212 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhhccccc
Confidence 455666667778889999998 4888754 2 3555566 79999999999988665555443
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=96.92 Aligned_cols=115 Identities=16% Similarity=0.108 Sum_probs=68.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc-----cchhhhhhh-----c----c----cccccc------
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV-----FTPLLASTC-----V----G----TLEFRS------ 115 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~-----~~~~~~~~~-----~----~----~~~~~~------ 115 (351)
...+||+||||||||+++|..|++.|++|+|||+..... |...+.... . + ......
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 446899999999999999999999999999999753221 110000000 0 0 000000
Q ss_pred cc-c---chhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCc
Q 018704 116 VA-E---PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (351)
Q Consensus 116 ~~-~---~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p 182 (351)
+. . .+.+.........++.++..+|+.+..+...+.+....++. ++.++.||+|+|...
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~--------~i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGR--------VIPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCc--------EEECCEEEECCCcCh
Confidence 00 0 00011111112346777888999988665554332224555 899999999999875
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-08 Score=98.31 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=69.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC-ccccc---hhhhhhh----------cc-c---------cccccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN-HMVFT---PLLASTC----------VG-T---------LEFRSV 116 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~-~~~~~---~~~~~~~----------~~-~---------~~~~~~ 116 (351)
..+||+|||||+||+.||..+++.|.+|+|||++. ...+. |...+.. .| . ..+..+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 45899999999999999999999999999999873 22211 1111100 00 0 000000
Q ss_pred ---------c--------cchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 117 ---------A--------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 117 ---------~--------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
. .........+....++.++...|..+..+.+.+.-....+|. .+.++.||+|||
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~--------~I~Ak~VIlATG 154 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGL--------EFRAKAVVLTTG 154 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCC--------EEECCEEEEeeC
Confidence 0 000111122334457788888898887666654422224565 899999999999
Q ss_pred CC
Q 018704 180 AE 181 (351)
Q Consensus 180 ~~ 181 (351)
..
T Consensus 155 TF 156 (618)
T PRK05192 155 TF 156 (618)
T ss_pred cc
Confidence 74
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=84.76 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=35.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP 101 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~ 101 (351)
..||+||||||+||+||++|++.|++|+|||++..+..-.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~ 69 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI 69 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcc
Confidence 4699999999999999999999999999999987764433
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-09 Score=106.98 Aligned_cols=39 Identities=23% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
....||||||+|++||+||+.+++.|.+|+|+|+.....
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~g 45 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFG 45 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 346899999999999999999999999999999987643
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-08 Score=94.55 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=66.1
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhh---hhh--------h-----cccc--cccc--------c-
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL---AST--------C-----VGTL--EFRS--------V- 116 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~---~~~--------~-----~~~~--~~~~--------~- 116 (351)
||+|||||+||+++|+.|++.|++|+|||+++...+...+ ... + .+.. .... +
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 7999999999999999999999999999987654321000 000 0 0000 0000 0
Q ss_pred c---cchhccchhhhcCCCeEEEEEEeeeEeCC-CCEEEEEeecCccccCCCceeEeeccEEEEecCCCc
Q 018704 117 A---EPIARIQPAISREPGSYFFLSHCAGIDTD-NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (351)
Q Consensus 117 ~---~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p 182 (351)
. ..+.+.........++.++..+|..+..+ ...+.+.. .++. ++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~-~~g~--------~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYC-AGGQ--------RIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEe-CCCC--------EEEeCEEEECCCCch
Confidence 0 00001111111223566777788888766 44454433 3454 899999999999876
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.5e-08 Score=93.74 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=33.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 358999999999999999999999999999998754
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-07 Score=90.43 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=32.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+||+|||||.+|+++|++|++.|.+|+|+|++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999864
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-08 Score=95.09 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++||+||||||||++||+.|++.|++|+|+|+.+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~ 39 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS 39 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 358999999999999999999999999999998754
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.79 E-value=6e-08 Score=87.75 Aligned_cols=91 Identities=23% Similarity=0.321 Sum_probs=74.1
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------------CCCC-----cHHHHHHHHHHh
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQL 294 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------l~~~-----~~~~~~~~~~~l 294 (351)
+|+|||||++|+.+|..|.+.+ .+|+++++.+. .+.+ +.++...+.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARAN--------------LKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHH
Confidence 6999999999999999998876 88999997531 1222 256778888888
Q ss_pred hhcCcEEEcCeEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 295 SKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 295 ~~~gV~~~~~~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
++.|++++..+|.+++.+ .+.+.+|.++.+|.||+|+|.+|+
T Consensus 68 ~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 68 VKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred HHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 899999998668888653 466677888999999999999887
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-08 Score=85.04 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=31.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
..+||+||||||+||+||++|++.|++|+|||++....
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~G 53 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPG 53 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-B
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 34899999999999999999999999999999987654
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-08 Score=94.75 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=33.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||+||||||||++||+.|++.|++|+|||+.+..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3589999999999999999999999999999987653
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.5e-08 Score=90.97 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=69.5
Q ss_pred cEEEECCchhHHHHHHhh--hccCceEEEEcCCCccccchhh------hh------hhcc-cc-------ccc------c
Q 018704 64 RVVVLGSGWAGCRLMKGI--DTSLYDVVCVSPRNHMVFTPLL------AS------TCVG-TL-------EFR------S 115 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L--~~~g~~v~vie~~~~~~~~~~~------~~------~~~~-~~-------~~~------~ 115 (351)
||+|||||+||+++|.+| ++.|.+|+|||+++...|.... .. .... +. ... .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 7899999999987655222110 00 0000 00 000 0
Q ss_pred c-ccchhccchh---hhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcC
Q 018704 116 V-AEPIARIQPA---ISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (351)
Q Consensus 116 ~-~~~~~~~~~~---~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~ 183 (351)
+ ...-..+... .....++.++...|..|+.....+.+.. ++|. .+.++.||-|+|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~-~~g~--------~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVL-ADGR--------TIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEE-CCCC--------EEEeeEEEECCCcccc
Confidence 0 0000111111 1123467788889999998888555533 5666 8999999999996544
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-08 Score=92.26 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=34.0
Q ss_pred CCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 59 ~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+++||+||||||||+++|..|++.|++|+|+|++.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3566999999999999999999999999999999874
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.3e-08 Score=85.99 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=33.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||+|||||||||+||++|++.|++|+|+|++...
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~ 60 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 4589999999999999999999999999999987654
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.8e-08 Score=91.48 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=32.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..||+|||||++||++|..|++.|++|+|+|+.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 57999999999999999999999999999998754
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.6e-08 Score=79.78 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=64.6
Q ss_pred EEECCchhHHHHHHhhhcc-----CceEEEEcCCCcc---ccchh-hhhhhcc----c---------cccccc-------
Q 018704 66 VVLGSGWAGCRLMKGIDTS-----LYDVVCVSPRNHM---VFTPL-LASTCVG----T---------LEFRSV------- 116 (351)
Q Consensus 66 vIIG~G~aGl~aA~~L~~~-----g~~v~vie~~~~~---~~~~~-~~~~~~~----~---------~~~~~~------- 116 (351)
+|||+|++|++++.+|.+. ..+|+|||+++.. .|.+. ......+ . ..+..|
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999775 5689999986542 12111 0111111 0 011101
Q ss_pred ----------------ccchhccchhhhcC----CCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEE
Q 018704 117 ----------------AEPIARIQPAISRE----PGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176 (351)
Q Consensus 117 ----------------~~~~~~~~~~~~~~----~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lvi 176 (351)
..++.+....+... ..+.++..+|+.++.....+.+.. .+|. .+.||+||+
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~-~~g~--------~~~~d~VvL 151 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVT-ADGQ--------SIRADAVVL 151 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEE-CCCC--------EEEeCEEEE
Confidence 11112222221111 135677889999998888776644 5566 899999999
Q ss_pred ecCC
Q 018704 177 ALGA 180 (351)
Q Consensus 177 AtG~ 180 (351)
|||.
T Consensus 152 a~Gh 155 (156)
T PF13454_consen 152 ATGH 155 (156)
T ss_pred CCCC
Confidence 9996
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-07 Score=88.27 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhcCcEEEcC-eEEEEeC--Ce---EEecCCcEEeccEEEEecCCCCccccccCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~---v~~~~g~~~~~D~vi~a~G~~p~~~~~~~g 343 (351)
..+...+.+.+++.|++++.+ +|++++. ++ +.+. +.++.+|.||+|+|.+...++..+|
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~g 265 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPLG 265 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHhC
Confidence 456677778888899999998 4888854 33 4444 4478999999999988766555444
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-07 Score=88.36 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcCcEEEcC-eEEEEeC---C---eEEecCCcEEeccEEEEecCCCCccccccCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS---Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~-~v~~v~~---~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
..+...+.+.+.+.|++++.+ +|++++. + .|.+.+| ++.+|.||+|+|-....+.+.+++
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~ 249 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGF 249 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCC
Confidence 455666778888999999999 5988852 2 2555566 699999999887665544444443
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-08 Score=92.74 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=30.9
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
+||+||||||||+++|+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 58999999999999999999999999999987
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.3e-08 Score=90.69 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=33.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+++||+||||||+|+++|+.|++.|++|+|+|+.+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 4579999999999999999999999999999987653
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-07 Score=89.78 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhh-hcCcEEEcCe-EEEEeC--C-e--EE---ecCCc--EEeccEEEEecCCCCccccccCCCC
Q 018704 284 DRLRHYATTQLS-KSGVRLVRGI-VKDVDS--Q-K--LI---LNDGT--EVPYGLLVWSTGVGPSTLVKSLDLP 345 (351)
Q Consensus 284 ~~~~~~~~~~l~-~~gV~~~~~~-v~~v~~--~-~--v~---~~~g~--~~~~D~vi~a~G~~p~~~~~~~gl~ 345 (351)
..+.+.+.+.+. ..|++++.+. |.+++. + + +. ..+|+ ++++|.||+|.|.+...+++.+|++
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 456677777775 4599999994 888753 2 2 33 23442 6899999999999998888877765
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-08 Score=98.82 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=63.6
Q ss_pred eEEEECCChHHHHHHHH-------HHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEc
Q 018704 232 HCVVVGGGPTGVEFSGE-------LSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVR 303 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~-------l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~ 303 (351)
..+++|++.++++++.. +.+++ .+|+++... ..+..+...+...+.+.+++.||++++
T Consensus 162 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~ 227 (557)
T PRK07843 162 NMVVMQQDYVWLNLLKRHPRGVLRALKVG--------------ARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLL 227 (557)
T ss_pred cccccHHHHHHHHhhhcCchhHHHHHHHH--------------HHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEe
Confidence 78899999999988754 44444 444443332 233345667788888889999999999
Q ss_pred Ce-EEEEeC--C---eEEec-CCc--EEecc-EEEEecC-CCCc-ccccc
Q 018704 304 GI-VKDVDS--Q---KLILN-DGT--EVPYG-LLVWSTG-VGPS-TLVKS 341 (351)
Q Consensus 304 ~~-v~~v~~--~---~v~~~-~g~--~~~~D-~vi~a~G-~~p~-~~~~~ 341 (351)
+. ++++.. + +|+.. +|+ .+.++ .||+|+| +.+| ++++.
T Consensus 228 ~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 228 NTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred CCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 94 777753 2 34443 453 47785 6888775 6676 44443
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.1e-08 Score=84.25 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=34.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||+|||||||||+||+.|++.|++|+|+|++...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3589999999999999999999999999999998764
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.2e-08 Score=90.04 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 457999999999999999999999999999998754
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-07 Score=89.85 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhhcCcEEEcC-eEEEEeC--C-e--EEe---cCC--cEEeccEEEEecCCCCccccccCCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-K--LIL---NDG--TEVPYGLLVWSTGVGPSTLVKSLDLP 345 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~-~--v~~---~~g--~~~~~D~vi~a~G~~p~~~~~~~gl~ 345 (351)
..+...+.+.+++.|++++.+ +|++++. + . +.+ .+| .++.+|.||+|+|.+...+++.+|++
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 567788888888899999999 4988864 2 2 332 223 25899999999999888887777765
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-07 Score=86.60 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=47.4
Q ss_pred cEEEEEeCCCCCCC--CcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCC
Q 018704 268 IHVTLIEANEILSS--FDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 268 ~~v~~~~~~~~l~~--~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p 335 (351)
.+++....+.+.|. ....+.+.+.+.+++.|++++.+. |.++.. + .+.+ ++.++.+|.||+|+|...
T Consensus 87 v~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 87 LELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred CeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 55555544443332 346778888889999999999994 888754 2 2333 566799999999999743
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-07 Score=91.55 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=32.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+||+||||||+||++|..|++.|++|+|||+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 48999999999999999999999999999997753
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.5e-07 Score=86.32 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=33.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc----CceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS----LYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~----g~~v~vie~~~~~~ 98 (351)
.+++|+|||||.|||+||.+|.+. |.+|+|+|+.+...
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G 62 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG 62 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence 357999999999999999999984 78999999988753
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-06 Score=84.82 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeCC---eEEecCCcEEeccEEEEecCCCCcccc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPSTLV 339 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~---~v~~~~g~~~~~D~vi~a~G~~p~~~~ 339 (351)
..+...+.+.+++.|++++.++ |.+++.+ .|.+.+| ++.||.||+|+|.....++
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g-~v~A~~VV~Atga~s~~l~ 241 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVRTPDG-QVTADKVVLALNAWMASHF 241 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEEeCCc-EEECCEEEEcccccccccC
Confidence 4667888888899999999995 8888653 2555556 6999999999997654333
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.9e-07 Score=79.03 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=58.2
Q ss_pred HHHHHhhhcC-CC-CccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEe----C---CeEEecCCcEE
Q 018704 254 MRDVRQRYSH-VK-DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD----S---QKLILNDGTEV 322 (351)
Q Consensus 254 ~~~~~~~~~~-~~-~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~----~---~~v~~~~g~~~ 322 (351)
.++++++||. .+ +...+-++... .+. ......+.++..+++.|+.++.|+ |+.+. . ..|.+.+|..+
T Consensus 122 seEvrk~fP~~~~l~d~~~G~~n~~gGvi--~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y 199 (399)
T KOG2820|consen 122 SEEVRKRFPSNIPLPDGWQGVVNESGGVI--NAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIY 199 (399)
T ss_pred HHHHHHhCCCCccCCcchhhcccccccEe--eHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCee
Confidence 4577788883 22 22222222221 111 234567788899999999999995 66554 2 36788899999
Q ss_pred eccEEEEecCCCCccccc
Q 018704 323 PYGLLVWSTGVGPSTLVK 340 (351)
Q Consensus 323 ~~D~vi~a~G~~p~~~~~ 340 (351)
.++.+|+++|.+-+.++.
T Consensus 200 ~akkiI~t~GaWi~klL~ 217 (399)
T KOG2820|consen 200 HAKKIIFTVGAWINKLLP 217 (399)
T ss_pred ecceEEEEecHHHHhhcC
Confidence 999999999999886665
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=89.78 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=31.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~ 96 (351)
++||+||||||+||++|..|++.| ++|+|+|+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 379999999999999999999985 99999998754
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.2e-07 Score=83.37 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=33.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhcc-CceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~-g~~v~vie~~~~~ 97 (351)
....||+|||||++|++||+.|++. |++|+|||+....
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 3467999999999999999999975 8999999987654
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-07 Score=87.78 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=33.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+++||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 358999999999999999999999999999998764
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-06 Score=80.21 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHhhhcCcEEEcC-eEEEEe--CC---eEEecCC--cEEeccEEEEecCCC-CccccccC
Q 018704 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ---KLILNDG--TEVPYGLLVWSTGVG-PSTLVKSL 342 (351)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~~~~~-~v~~v~--~~---~v~~~~g--~~~~~D~vi~a~G~~-p~~~~~~~ 342 (351)
+.++.+.+.+.+++.|++++.+ +|.++. ++ .+.+.++ .++++|.+|+|+|.+ ...+++.+
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence 3678888999999999999999 588865 33 2444554 479999999999999 66666554
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.9e-08 Score=81.87 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=30.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+|+|||+|++||+||+.|+..|+.|+|||+..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 469999999999999999999999999999653
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.8e-07 Score=90.38 Aligned_cols=87 Identities=11% Similarity=0.076 Sum_probs=54.9
Q ss_pred HHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeC--C---eEEec---CC--cEEe
Q 018704 255 RDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILN---DG--TEVP 323 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~---~v~~~---~g--~~~~ 323 (351)
+++.+.+|.++++..=.+...+... -+..+...+.+.+.+.|++++++ +|+++.. + +|.+. +| .++.
T Consensus 122 ~e~~~~eP~l~~~~~ga~~~~dg~v--dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~ 199 (546)
T PRK11101 122 QQALILEPAVNPALIGAVKVPDGTV--DPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIH 199 (546)
T ss_pred HHHHHhCCCcCccceEEEEecCcEE--CHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEE
Confidence 3445556665544333333333211 23566666777788899999999 4888753 3 34442 23 3689
Q ss_pred ccEEEEecCCCCccccccCC
Q 018704 324 YGLLVWSTGVGPSTLVKSLD 343 (351)
Q Consensus 324 ~D~vi~a~G~~p~~~~~~~g 343 (351)
+|.||.|+|.+...+.+..+
T Consensus 200 A~~VVnAaG~wa~~l~~~~g 219 (546)
T PRK11101 200 APVVVNAAGIWGQHIAEYAD 219 (546)
T ss_pred CCEEEECCChhHHHHHHhcC
Confidence 99999999998876655444
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-07 Score=90.74 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=32.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++||+||||||+||++|..|++.|++|+|||+.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 47999999999999999999999999999998754
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3e-07 Score=87.03 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3799999999999999999999999999999875
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=3e-07 Score=86.71 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc---CceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~---g~~v~vie~~ 94 (351)
..+||+||||||+|+++|+.|++. |++|+|+|+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 347999999999999999999998 9999999984
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-07 Score=86.64 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=33.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+..+|+|||||++||++|..|++.|++|+|+|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 458999999999999999999999999999998764
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.2e-07 Score=89.72 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecCCcEEeccEEEEecCCCCccccc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVK 340 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~g~~~~~D~vi~a~G~~p~~~~~ 340 (351)
..+...+.+.+.+ |++++.+. |+++.. ++ |.+.+|..+.+|.||+|+|.....++.
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~ 468 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAARFAQ 468 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcccccc
Confidence 5677888888888 99999984 888753 33 455667667899999999988765444
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.2e-07 Score=85.44 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+||+||||||+|+++|..|++.|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 3799999999999999999999999999999764
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.8e-07 Score=86.95 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=31.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+||+||||||||++||+.|++.|++|+|+|++..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4899999999999999999999999999998743
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.55 E-value=3e-07 Score=86.30 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=31.1
Q ss_pred cEEEECCchhHHHHHHhhhccC-ceEEEEcCCCc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~ 96 (351)
||+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 7999999999999999999999 99999998754
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.3e-07 Score=86.49 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=33.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
++.||+|||||++||++|..|++.|++|+|+|+.+..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 3479999999999999999999999999999987643
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.4e-07 Score=84.88 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=32.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+||+||||||+|+++|..|++.|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 45899999999999999999999999999999875
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.3e-07 Score=85.12 Aligned_cols=94 Identities=18% Similarity=0.306 Sum_probs=69.0
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----CCCcHHHH-----H----HHHHHhhhc
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDDRLR-----H----YATTQLSKS 297 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l----~~~~~~~~-----~----~~~~~l~~~ 297 (351)
++|+|||||+.|+.+|..|.+.+ ...+|+++.+.... +.+...+. + .-.+.+.+.
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~------------~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 71 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQG------------FTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQEN 71 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhC------------CCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHC
Confidence 48999999999999999998754 23689999876322 12222110 0 012335667
Q ss_pred CcEEEcCe-EEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+|+++.++ |..++. ..+.+.+|+++.+|.+|+|||.+|.
T Consensus 72 ~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 72 NVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred CCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 99999995 888865 4678888999999999999999986
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.8e-07 Score=85.22 Aligned_cols=62 Identities=23% Similarity=0.371 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhcC-cEEEcC-eEEEEeC--C---eEEec---CCc--EEeccEEEEecCCCCccccccCCCC
Q 018704 284 DRLRHYATTQLSKSG-VRLVRG-IVKDVDS--Q---KLILN---DGT--EVPYGLLVWSTGVGPSTLVKSLDLP 345 (351)
Q Consensus 284 ~~~~~~~~~~l~~~g-V~~~~~-~v~~v~~--~---~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~~~gl~ 345 (351)
..+.+.+.+.+++.| ++++.+ +|++++. + .+.+. +|+ ++.+|.||+|.|.+...+++.+|++
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 466777888888876 899999 4888763 3 24433 353 5899999999999888777777665
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-07 Score=89.08 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=32.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+||+||||||+||++|..|++.|++|+|||+.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47999999999999999999999999999997654
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.3e-08 Score=66.07 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=28.6
Q ss_pred EECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 67 VLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 67 IIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
|||||++||++|+.|++.|++|+|+|+++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 8999999999999999999999999998875
|
... |
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.4e-07 Score=84.92 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=32.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+|+|||||++||++|..|++.|++|+|+|+++..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 37999999999999999999999999999987653
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.7e-07 Score=85.59 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=70.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
+.+|+|||||++|+.+|..|++.|.+|+++++.+.+.-. ....+...........++.++. ..|
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---------------~~~~~~~~~~~~l~~~GI~i~~~~~V 221 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR---------------EEPSVAALAKQYMEEDGITFLLNAHT 221 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC---------------CCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 468999999999999999999999999999997763200 0111112222223344677665 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.++.++..+.+.. ++. ++.||.||+|+|..|....
T Consensus 222 ~~i~~~~~~v~v~~--~g~--------~i~~D~viva~G~~p~~~~ 257 (438)
T PRK07251 222 TEVKNDGDQVLVVT--EDE--------TYRFDALLYATGRKPNTEP 257 (438)
T ss_pred EEEEecCCEEEEEE--CCe--------EEEcCEEEEeeCCCCCccc
Confidence 88887666665532 344 7999999999999988653
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.3e-07 Score=83.20 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=31.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+||+||||||||+++|..|++. ++|+|+|+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 7999999999999999999999 99999998764
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.4e-07 Score=84.85 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=31.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
.+||+||||||+||++|..|++.|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 479999999999999999999999999999985
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.1e-07 Score=84.03 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=33.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||+||||||+||++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4579999999999999999999999999999977653
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.8e-07 Score=85.17 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=33.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+.+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 558999999999999999999999999999998753
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.4e-07 Score=84.78 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
.+||+||||||+||++|..|++.|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 479999999999999999999999999999997
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.4e-06 Score=83.91 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=57.6
Q ss_pred HHHHHhhhcCCCCc-----cEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeC----C---eEEe---c
Q 018704 254 MRDVRQRYSHVKDY-----IHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS----Q---KLIL---N 317 (351)
Q Consensus 254 ~~~~~~~~~~~~~~-----~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~----~---~v~~---~ 317 (351)
..++.+.+|.+.+. ..=.++..+... -+..+...+.+.+++.|++++.+ +|.++.. + +|.+ .
T Consensus 199 ~~e~~~~~P~L~~~~~~~~l~ga~~~~Dg~v--dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~ 276 (627)
T PLN02464 199 AKESLELFPTLAKKGKDGSLKGTVVYYDGQM--NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNL 276 (627)
T ss_pred HHHHHHhCCCCCccccccceeEEEEecCcEE--cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECC
Confidence 44566677776644 332333333222 24577778888899999999999 5888742 2 2343 2
Q ss_pred CCc--EEeccEEEEecCCCCccccccCC
Q 018704 318 DGT--EVPYGLLVWSTGVGPSTLVKSLD 343 (351)
Q Consensus 318 ~g~--~~~~D~vi~a~G~~p~~~~~~~g 343 (351)
+|+ ++.+|.||+|+|.+...+.+.++
T Consensus 277 tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 277 TGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred CCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 344 57999999999988776665553
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.8e-07 Score=86.88 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=33.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...++|+||||||+||++|..|++.|++|+|||+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 3458999999999999999999999999999997653
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.1e-07 Score=83.27 Aligned_cols=94 Identities=22% Similarity=0.321 Sum_probs=70.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---CCCc---------HHHHHHHHHHhhhcCc
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFD---------DRLRHYATTQLSKSGV 299 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---~~~~---------~~~~~~~~~~l~~~gV 299 (351)
+|+|||||..|+.+|..+.+.. .++.+|++++++... +.++ .++...+.+.+++.||
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-----------~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv 69 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-----------LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGA 69 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-----------CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence 4899999999999988875321 234899999987421 2111 1233334556677899
Q ss_pred EEEcCeEEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 300 RLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 300 ~~~~~~v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+++.++|++++. ..|.+.+|+++++|.+|+|||..|+
T Consensus 70 ~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 70 RFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred EEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCC
Confidence 999998988875 5788899989999999999999887
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.1e-07 Score=85.15 Aligned_cols=102 Identities=15% Similarity=0.211 Sum_probs=70.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||++|+.+|..|++.|.+|+++++.+.+.. . ....+.+.........++.++. ..+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-----~----------~d~e~~~~l~~~L~~~GI~i~~~~~V 234 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-----G----------EDEDIAHILREKLENDGVKIFTGAAL 234 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-----c----------ccHHHHHHHHHHHHHCCCEEEECCEE
Confidence 46899999999999999999999999999998775321 0 0111222222223344777665 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.++.+...+.+.. +++ ..++.||.|++|+|..|+...
T Consensus 235 ~~i~~~~~~v~~~~--~g~------~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 235 KGLNSYKKQALFEY--EGS------IQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred EEEEEcCCEEEEEE--CCc------eEEEEeCEEEEecCCccCCCC
Confidence 88887666665542 232 126899999999999887653
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-06 Score=83.11 Aligned_cols=105 Identities=16% Similarity=0.231 Sum_probs=73.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-E
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (351)
.+.+++|||||+.|+..|..+++.|.+|||+|+.+++.- .....+.+.........++.++.. +
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp---------------~~D~ei~~~~~~~l~~~gv~i~~~~~ 236 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP---------------GEDPEISKELTKQLEKGGVKILLNTK 236 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC---------------cCCHHHHHHHHHHHHhCCeEEEccce
Confidence 347899999999999999999999999999999887420 112333333333344456766654 6
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
+..+....+.+.++. .++. ...+.+|.|++|+|-.|+..++
T Consensus 237 v~~~~~~~~~v~v~~-~~g~------~~~~~ad~vLvAiGR~Pn~~~L 277 (454)
T COG1249 237 VTAVEKKDDGVLVTL-EDGE------GGTIEADAVLVAIGRKPNTDGL 277 (454)
T ss_pred EEEEEecCCeEEEEE-ecCC------CCEEEeeEEEEccCCccCCCCC
Confidence 777766555444433 2332 0168899999999999988753
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=7e-07 Score=84.17 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=32.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.||+|||||++||++|..|++.|++|+|+|+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 47999999999999999999999999999987643
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=85.41 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=31.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+||+|||||+||+.+|..+++.|.+|+|+|++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 589999999999999999999999999999864
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.2e-07 Score=84.57 Aligned_cols=95 Identities=25% Similarity=0.368 Sum_probs=69.7
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---CCC--------c-HHHHHHHHHHhh
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSF--------D-DRLRHYATTQLS 295 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---~~~--------~-~~~~~~~~~~l~ 295 (351)
...++|+|||||..|+.+|..|.+ .+.+|++|++++.. +.+ + ..+...+.+.++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~--------------~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 73 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP--------------KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALA 73 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc--------------CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhc
Confidence 344699999999999999877642 23789999986421 211 1 223333455666
Q ss_pred hcCcEEEcCeEEEEeC--CeEEe----------cCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGIVKDVDS--QKLIL----------NDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~v~~v~~--~~v~~----------~~g~~~~~D~vi~a~G~~p~ 336 (351)
..+++++.++|++++. +.|.+ .+|.++++|.+|+|||..|.
T Consensus 74 ~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 74 KLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred cCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC
Confidence 7789999999998875 46777 46778999999999999876
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-07 Score=91.03 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=34.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
...+||+|||+|.+|+++|..+++.|.+|+|||+.+..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 34689999999999999999999999999999997654
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-07 Score=89.94 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=28.5
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
||||||||+||++||+.+++.|.+|+|||+.+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~l 34 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFL 34 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccC
Confidence 7999999999999999999999999999998765
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=84.67 Aligned_cols=102 Identities=12% Similarity=0.204 Sum_probs=69.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||++|+.+|..|++.|.+|+++|+.+.+.- . +...+...........++.++. ..|
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~--~-------------~~~~~~~~~~~~l~~~gi~i~~~~~v 234 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP--G-------------EDAEVSKVVAKALKKKGVKILTNTKV 234 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC--C-------------CCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 46899999999999999999999999999999775310 0 0011111111222334676655 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.+.+.+.+... ++. ...+.+|.||+|+|..|+..
T Consensus 235 ~~i~~~~~~v~v~~~-~g~------~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 235 TAVEKNDDQVVYENK-GGE------TETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEEEEeCCEEEEEEe-CCc------EEEEEeCEEEEecCCcccCC
Confidence 888876666655432 331 12799999999999998766
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=81.39 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=32.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+||+|||||++||++|..|++.|++|+|||+.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 58999999999999999999999999999977543
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.3e-07 Score=83.33 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=31.3
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
||+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 699999999999999999999999999998864
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=85.08 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=33.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||+||||||+||++|..|++.|.+|+|||+.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 347999999999999999999999999999998754
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-06 Score=85.35 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=33.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...+||+||||||+||++|..|++.|++|+|||+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3458999999999999999999999999999998754
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=82.07 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=32.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+.||+||||||+||++|..|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47999999999999999999999999999998864
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-06 Score=83.43 Aligned_cols=93 Identities=22% Similarity=0.436 Sum_probs=67.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-------CCC-----c--HHHHHHHHHHhhhc
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-------SSF-----D--DRLRHYATTQLSKS 297 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l-------~~~-----~--~~~~~~~~~~l~~~ 297 (351)
+|+|||||+.|+.+|..|.+++ ++.+|+++++++.+ +.+ + .++.....+.+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~------------~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN------------KELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKS 69 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC------------CCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHC
Confidence 7999999999999999998754 23689999997521 111 1 11222334557778
Q ss_pred CcEEEcC-eEEEEeC--CeEEecC---CcEEe--ccEEEEecCCCCc
Q 018704 298 GVRLVRG-IVKDVDS--QKLILND---GTEVP--YGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~-~v~~v~~--~~v~~~~---g~~~~--~D~vi~a~G~~p~ 336 (351)
||+++.+ +|.+++. +.+.+.+ |..++ +|.+|+|||.+|.
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 9999887 5888864 4677654 56666 9999999999987
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=98.42 E-value=2e-06 Score=83.64 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 59 ~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3556899999999999999999999999999999764
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-06 Score=81.28 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=69.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. . +...............++.++. ..+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~---------~-----~~~~~~~~l~~~l~~~gV~i~~~~~v 206 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS---------L-----MPPEVSSRLQHRLTEMGVHLLLKSQL 206 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch---------h-----CCHHHHHHHHHHHHhCCCEEEECCeE
Confidence 368999999999999999999999999999997763210 0 0011111111223334677654 578
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
..++.+...+.+.. .+++ ++.+|.||+|+|..|+.
T Consensus 207 ~~i~~~~~~~~v~~-~~g~--------~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 207 QGLEKTDSGIRATL-DSGR--------SIEVDAVIAAAGLRPNT 241 (377)
T ss_pred EEEEccCCEEEEEE-cCCc--------EEECCEEEECcCCCcch
Confidence 88887766655543 4565 89999999999998764
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-06 Score=83.51 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=31.3
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+||||||||.|||+||..+++.|.+|+|+|+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999999999999864
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=83.68 Aligned_cols=103 Identities=15% Similarity=0.246 Sum_probs=67.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+. + . ....+...........++.++.. .|
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-----~-------~---~~~~~~~~l~~~l~~~gI~i~~~~~v 244 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-----P-------T---EDAELSKEVARLLKKLGVRVVTGAKV 244 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-----C-------c---CCHHHHHHHHHHHHhcCCEEEeCcEE
Confidence 4699999999999999999999999999999877531 0 0 01111111111233446776654 67
Q ss_pred eeEeC--CCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDT--DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~--~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.++. +.+...+ ...+++ ...+.||.||+|+|..|....
T Consensus 245 ~~i~~~~~~~~~~~-~~~~g~------~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 245 LGLTLKKDGGVLIV-AEHNGE------EKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred EEEEEecCCCEEEE-EEeCCc------eEEEEeCEEEEeeCCccCCCC
Confidence 78864 3333322 222332 127999999999999987654
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.7e-06 Score=85.11 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=33.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||+||||||+||++|..|++.|++|+|||+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 457999999999999999999999999999998764
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-06 Score=83.60 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=70.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . ....+...........++.++.. .|
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--~-------------~~~~~~~~l~~~l~~~gV~i~~~~~V 236 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP--G-------------EDKEISKLAERALKKRGIKIKTGAKA 236 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC--c-------------CCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 36899999999999999999999999999999776320 0 01111122222233446776654 78
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..++.+.+.+.+...+++. ...+.+|.||+|+|..|....
T Consensus 237 ~~i~~~~~~v~v~~~~gg~------~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 237 KKVEQTDDGVTVTLEDGGK------EETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEEEEeCCEEEEEEEeCCe------eEEEEeCEEEEeeCCccCCCC
Confidence 8888766655554322221 127899999999999987654
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=83.03 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.3
Q ss_pred CcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~~ 97 (351)
.+|+|||||++||++|..|++.| ++|+|+|+.+..
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 37999999999999999999998 599999987653
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-06 Score=76.70 Aligned_cols=92 Identities=16% Similarity=0.257 Sum_probs=58.1
Q ss_pred HHHHHHHhhhcCCC-CccEEEEEeCCCCCCCCc-HHHHHHHHHHhhhcCcEEEcCeEEEEeCC-----------------
Q 018704 252 FIMRDVRQRYSHVK-DYIHVTLIEANEILSSFD-DRLRHYATTQLSKSGVRLVRGIVKDVDSQ----------------- 312 (351)
Q Consensus 252 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~~-~~~~~~~~~~l~~~gV~~~~~~v~~v~~~----------------- 312 (351)
+.+++++.+||-+. +++....+--.. -..++ ..+...+.+.....|+.+..|+|++++-.
T Consensus 210 ls~d~Lt~rfPwlntegVaLa~lG~e~-EGwfdpw~LLs~~rrk~~~lGv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~ 288 (509)
T KOG2853|consen 210 LSPDELTKRFPWLNTEGVALASLGVEK-EGWFDPWALLSGIRRKAITLGVQFVKGEVVGFEFESQRAVHAFTDDGTAKLR 288 (509)
T ss_pred cCHHHHhhhCCcccccceeeeeccccc-ccccCHHHHHHHHHHHhhhhcceEecceEEEEEEecccceeeecccchhhhh
Confidence 34677888888754 333333222211 12233 46677788888889999999998887521
Q ss_pred -----e--EEecCC--cEEeccEEEEecCCCCccccccCCC
Q 018704 313 -----K--LILNDG--TEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 313 -----~--v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
+ |.+.|+ +.++|+.+|.|.|.+....++..|+
T Consensus 289 ~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~QvArlAgI 329 (509)
T KOG2853|consen 289 AQRISGVVVRMNDALARPVKFALCVNAAGAWSGQVARLAGI 329 (509)
T ss_pred hcccceeEEecCchhcCceeEEEEEeccCccHHHHHHHhcc
Confidence 1 222333 4588999999999887755544433
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=90.78 Aligned_cols=92 Identities=24% Similarity=0.278 Sum_probs=72.3
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--------CCC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--------LSS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------l~~--~~~~~~~~~~~~l~~~ 297 (351)
.++|+|+|||||+.|+.+|..|++.| .+|+++++... +|. ++.++.+...+.+++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G--------------~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~ 369 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEG--------------FPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLL 369 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhh
Confidence 45789999999999999999999887 89999998631 122 3566777777788899
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCC-Cc
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~-p~ 336 (351)
||+++.|...+ ..+.+++.....+|.||+|||.. |.
T Consensus 370 Gv~f~~n~~vG---~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 370 GGRFVKNFVVG---KTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred cCeEEEeEEec---cEEeHHHhccccCCEEEEeCCCCCCC
Confidence 99999986432 34666666667899999999984 54
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-05 Score=73.91 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=55.3
Q ss_pred CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEEEEecCCCCcccccc----CCCCCC
Q 018704 278 ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKS----LDLPKS 347 (351)
Q Consensus 278 ~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~~----~gl~~~ 347 (351)
+-...-+.+.+.+.+.+++.|+++++++ |.+++- + .+.+++|.++++|.||+|+|+..++|+++ +|+...
T Consensus 167 iGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~~ 246 (486)
T COG2509 167 IGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKMR 246 (486)
T ss_pred cCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCcccc
Confidence 3333446888899999999999999995 977753 2 67889999999999999999999866654 466543
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=62.54 Aligned_cols=73 Identities=23% Similarity=0.382 Sum_probs=50.8
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEeee
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHCAG 142 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 142 (351)
+|+|||||+.|+.+|..|++.|.+|+|+++.+.+. + .+...............++.++. ..+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--~-------------~~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 65 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--P-------------GFDPDAAKILEEYLRKRGVEVHTNTKVKE 65 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--T-------------TSSHHHHHHHHHHHHHTTEEEEESEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--h-------------hcCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 58999999999999999999999999999988743 1 11122222222233344777665 47888
Q ss_pred EeCCCCEEE
Q 018704 143 IDTDNHVVH 151 (351)
Q Consensus 143 i~~~~~~v~ 151 (351)
++.++..+.
T Consensus 66 i~~~~~~~~ 74 (80)
T PF00070_consen 66 IEKDGDGVE 74 (80)
T ss_dssp EEEETTSEE
T ss_pred EEEeCCEEE
Confidence 877665543
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.6e-06 Score=81.77 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=69.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEE-EEEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+. + . ....+.+....+.. .++.++ ...+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-----~-----~-----~d~~~~~~l~~l~~-~~v~i~~~~~v 229 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-----R-----H-----LDDDISERFTELAS-KRWDVRLGRNV 229 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-----c-----c-----cCHHHHHHHHHHHh-cCeEEEeCCEE
Confidence 4689999999999999999999999999999977532 0 0 01111111111222 245554 4578
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
+.++.+.+.+.+.. .+++ .+.+|.|++|+|..|+...+
T Consensus 230 ~~i~~~~~~v~v~~-~~g~--------~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 230 VGVSQDGSGVTLRL-DDGS--------TVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred EEEEEcCCEEEEEE-CCCc--------EeecCEEEEEECCccCcccc
Confidence 88876655554433 3455 89999999999999887643
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-06 Score=83.01 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=69.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||+|++|+.+|..|++.|.+|+++++.+.+... ....+...........++.++.. +|
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~---------------~d~~~~~~l~~~l~~~gV~i~~~~~V 230 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR---------------EEPEISAAVEEALAEEGIEVVTSAQV 230 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc---------------cCHHHHHHHHHHHHHcCCEEEcCcEE
Confidence 368999999999999999999999999999987653210 01111122222233456776654 68
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.++.+...+.+....++. ..++.+|.||+|+|..|....
T Consensus 231 ~~i~~~~~~~~v~~~~~~~------~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 231 KAVSVRGGGKIITVEKPGG------QGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EEEEEcCCEEEEEEEeCCC------ceEEEeCEEEEeECCCcCCCC
Confidence 8887655444333211111 127999999999999888763
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.7e-06 Score=80.67 Aligned_cols=91 Identities=24% Similarity=0.361 Sum_probs=69.5
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC---------C---------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---------S--------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~---------~--------------------- 281 (351)
.|+|||||+.|+.+|..+++.| .+|.+++++.+-. .
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G--------------~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 69 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHG--------------AKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGW 69 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCc
Confidence 7999999999999999999887 8999999742110 0
Q ss_pred ------Cc------------HHHHHHHHHHhhhcCcEEEcCeEEEEeCCeEEe-cCCcEEeccEEEEecCCCCc
Q 018704 282 ------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL-NDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 282 ------~~------------~~~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~-~~g~~~~~D~vi~a~G~~p~ 336 (351)
++ ..+.+.+++.+++.||+++.+++..++.+.+.. .+|+++++|.||+|||.+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 70 TVGKARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQ 143 (446)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCC
Confidence 00 012234445577789999999888887766655 46778999999999999987
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-06 Score=80.03 Aligned_cols=32 Identities=13% Similarity=0.354 Sum_probs=30.3
Q ss_pred cEEEECCchhHHHHHHhhhcc--CceEEEEcCCC
Q 018704 64 RVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~ 95 (351)
||+|||||+||+++|..|++. |++|+|+|+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 799999999999999999986 99999999976
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.3e-06 Score=81.44 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=68.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. ....+.+.........++.++. ..|
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~---------------~~~~~~~~l~~~l~~~GV~i~~~~~V 235 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR---------------EDEDVAAAVREILEREGIDVRLNAEC 235 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc---------------cCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 479999999999999999999999999999997763210 0111111222223345777665 478
Q ss_pred eeEeCCCCEEEEEee--cCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETV--TDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~--~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.++..+.+... .++. .+.+|.||+|+|..|+..
T Consensus 236 ~~i~~~~~~~~v~~~~~~~~~--------~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 236 IRVERDGDGIAVGLDCNGGAP--------EITGSHILVAVGRVPNTD 274 (463)
T ss_pred EEEEEcCCEEEEEEEeCCCce--------EEEeCEEEECcCCCcCCC
Confidence 888776554433221 1223 799999999999998865
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.8e-06 Score=78.33 Aligned_cols=53 Identities=19% Similarity=0.431 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhcCcEEEcCeEEEEe--CC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGIVKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~v~~v~--~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
....+.+.+...+.||+++.++|.++. ++ .|++++|+++++|.||=|+|+...
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 366777888888999999999876663 22 577889999999999999998655
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.4e-07 Score=86.57 Aligned_cols=39 Identities=26% Similarity=0.513 Sum_probs=35.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
..+++|+|||||+|||+||++|.+.|++|+|+|.+++..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence 456899999999999999999999999999999888754
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.4e-06 Score=81.31 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=69.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.- . +...+...........++.++. ..+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~----------~-----~d~~~~~~l~~~l~~~gI~v~~~~~v 239 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS----------F-----LDDEISDALSYHLRDSGVTIRHNEEV 239 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC----------c-----CCHHHHHHHHHHHHHcCCEEEECCEE
Confidence 47899999999999999999999999999998775310 0 0111111111122334676654 578
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
+.++.++..+.++. .++. ++.+|.||+|+|..|+..
T Consensus 240 ~~i~~~~~~~~v~~-~~g~--------~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 240 EKVEGGDDGVIVHL-KSGK--------KIKADCLLYANGRTGNTD 275 (461)
T ss_pred EEEEEeCCeEEEEE-CCCC--------EEEeCEEEEeecCCcccc
Confidence 88876555555542 4455 799999999999998765
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.7e-06 Score=80.75 Aligned_cols=90 Identities=28% Similarity=0.472 Sum_probs=68.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------CC---------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SS--------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---------~~--------------------- 281 (351)
.|+|||||+.|+.+|..+++.| .+|.++++..+. |.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G--------------~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g 71 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYG--------------AKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYG 71 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcC
Confidence 7999999999999999999887 899999985320 00
Q ss_pred -------Cc-HH-----------HHHHHHHHhhhcCcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 282 -------FD-DR-----------LRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 282 -------~~-~~-----------~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
++ .. +.+.+.+.+++.||+++.++++.++...|.+ +|+++.+|.||+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~ 144 (450)
T PRK06116 72 FDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPS 144 (450)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCC
Confidence 00 00 1111233456679999999887787788888 7778999999999999987
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.5e-06 Score=80.86 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=74.0
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC---CCC------------CCCcHHHHHHHHHH
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL------------SSFDDRLRHYATTQ 293 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~l------------~~~~~~~~~~~~~~ 293 (351)
...+|+|||||+.|+.+|..+++.| .+|+++... .+. ....+++.+.+.+.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 276 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKG--------------LRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEH 276 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHH
Confidence 3469999999999999999999877 889888641 111 11335677788888
Q ss_pred hhhcCcEEEcC-eEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 294 LSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 294 l~~~gV~~~~~-~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+++.||+++.+ +|.+++.+ .+.+++|..+.+|.+|+|+|..|.
T Consensus 277 l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 277 IKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred HHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC
Confidence 88999999998 48888543 456678888999999999998876
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-06 Score=81.60 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=31.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|+|||||.+|+.+|..|++.|++|+|||+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 3799999999999999999999999999997665
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.6e-06 Score=78.15 Aligned_cols=94 Identities=28% Similarity=0.452 Sum_probs=73.2
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC---CCC--------C-cHHHHHHHHHHhhhcC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---LSS--------F-DDRLRHYATTQLSKSG 298 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---l~~--------~-~~~~~~~~~~~l~~~g 298 (351)
++|+|||||..|+..+..|.+.- ++.+++++++... .|. + ..++...+.+.++..+
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~------------~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~ 71 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKL------------PDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSG 71 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcC------------CCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccC
Confidence 49999999999999998887531 1378999999742 111 1 2344455666677555
Q ss_pred -cEEEcCeEEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 299 -VRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 299 -V~~~~~~v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
|+++.++|++|+. .+|.++++.++++|.+|+|+|..++
T Consensus 72 ~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~ 112 (405)
T COG1252 72 NVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETN 112 (405)
T ss_pred ceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCC
Confidence 9999999999875 5899999888999999999999988
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.1e-06 Score=79.90 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=67.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||++|+.+|..|++.|.+|+++++.+..... .+...+...........++.++. ..+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~--------------~~~~~~~~~~~~~l~~~gV~v~~~~~v 202 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK--------------LFDEEMNQIVEEELKKHEINLRLNEEV 202 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc--------------ccCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 368999999999999999999999999999987653100 00111111112223344677664 578
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.+...+.+ .+++ ++.||.||+|+|..|...
T Consensus 203 ~~i~~~~~~v~~---~~g~--------~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 203 DSIEGEERVKVF---TSGG--------VYQADMVILATGIKPNSE 236 (427)
T ss_pred EEEecCCCEEEE---cCCC--------EEEeCEEEECCCccCCHH
Confidence 888876553222 3455 899999999999987754
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.7e-07 Score=83.02 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=72.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC----ccccchhhhhhhcccc--------------------cc----
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN----HMVFTPLLASTCVGTL--------------------EF---- 113 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~----~~~~~~~~~~~~~~~~--------------------~~---- 113 (351)
.+||+|||||.||+.||...+|.|.++.++--+. .++..|.+.+...|.. .+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 4899999999999999999999999998886442 2223343433333311 00
Q ss_pred -------c------ccccchhccchhhhcCCCeEEEEEEeeeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 114 -------R------SVAEPIARIQPAISREPGSYFFLSHCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 114 -------~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
. +-..+-......+....+...+.+.|+.+..++. .+.-.....|. .+.++.||++||
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~--------~~~a~aVVlTTG 155 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGP--------EFHAKAVVLTTG 155 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCC--------eeecCEEEEeec
Confidence 0 0011112222335556678888888888877544 34433446777 999999999999
Q ss_pred CC
Q 018704 180 AE 181 (351)
Q Consensus 180 ~~ 181 (351)
..
T Consensus 156 TF 157 (621)
T COG0445 156 TF 157 (621)
T ss_pred cc
Confidence 64
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.9e-06 Score=79.71 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=68.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+... + .. ...+...........++.++. ..|
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-----~-------~~---d~~~~~~l~~~l~~~gV~i~~~~~v 236 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-----P-------NE---DAEVSKEIAKQYKKLGVKILTGTKV 236 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-----C-------cc---CHHHHHHHHHHHHHCCCEEEECCEE
Confidence 4689999999999999999999999999999866531 0 00 111111212223344777665 478
Q ss_pred eeEeCCCCEEEEEee-cCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~-~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
+.++.+...+.+... .++. ..++.+|.||+|+|..|+..
T Consensus 237 ~~i~~~~~~~~v~~~~~~g~------~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 237 ESIDDNGSKVTVTVSKKDGK------AQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEEEEeCCeEEEEEEecCCC------eEEEEeCEEEECcCcccCCC
Confidence 888766554443221 2332 13799999999999988765
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.9e-06 Score=79.83 Aligned_cols=92 Identities=15% Similarity=0.240 Sum_probs=73.6
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC---CC--------CC----CCcHHHHHHHHHHhh
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------LS----SFDDRLRHYATTQLS 295 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~--------l~----~~~~~~~~~~~~~l~ 295 (351)
.+|+|||||+.|+.+|..+++.| .+|+++... .+ ++ .....+.+.+.++++
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 277 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKG--------------IRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVK 277 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999887 888888652 11 11 123577788888999
Q ss_pred hcCcEEEcC-eEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~-~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.|++++.+ +|.+++.. .+.+.+|.++.+|.||+|+|..|+
T Consensus 278 ~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 278 EYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred HCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 999999998 48888642 456678888999999999998776
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.6e-06 Score=79.94 Aligned_cols=99 Identities=15% Similarity=0.193 Sum_probs=68.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||+|+.|+.+|..|++.|.+|+++++...+. . ....+...........++.++. ..+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~------~----------~~~~~~~~l~~~l~~~GI~v~~~~~v 241 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS------Q----------EDPAVGEAIEAAFRREGIEVLKQTQA 241 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC------C----------CCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 4689999999999999999999999999998743211 0 0111122222223345777766 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..++.++..+.+.. ++. ++.+|.||+|+|..|+...
T Consensus 242 ~~i~~~~~~~~v~~--~~~--------~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 242 SEVDYNGREFILET--NAG--------TLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred EEEEEcCCEEEEEE--CCC--------EEEeCEEEEccCCCCCcCC
Confidence 88887666555432 333 7999999999999987753
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=7e-06 Score=79.40 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=69.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+... . ...+...........++.++. ..|
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------~-----d~~~~~~~~~~l~~~gi~i~~~~~v 247 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA----------A-----DEQVAKEAAKAFTKQGLDIHLGVKI 247 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc----------C-----CHHHHHHHHHHHHHcCcEEEeCcEE
Confidence 469999999999999999999999999999997753210 0 011111111122234677665 478
Q ss_pred eeEeCCCCEEEEEeec-CccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVT-DELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~-~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.++.+...+.+...+ +++ ...+.+|.|++|+|..|....
T Consensus 248 ~~i~~~~~~v~v~~~~~~g~------~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 248 GEIKTGGKGVSVAYTDADGE------AQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EEEEEcCCEEEEEEEeCCCc------eeEEEcCEEEEccCCccCCCC
Confidence 8888766555443212 121 137999999999999988763
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.3e-06 Score=78.70 Aligned_cols=100 Identities=14% Similarity=0.196 Sum_probs=68.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEE-EEEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 140 (351)
..+++|||||+.|+.+|..|++.|.+|++|++.+.+.- ..+ ..+...+. .+.. .++.++ ...|
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~----------~~d-~~~~~~l~----~~~~-~gI~i~~~~~V 232 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR----------HLD-EDISDRFT----EIAK-KKWDIRLGRNV 232 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc----------ccC-HHHHHHHH----HHHh-cCCEEEeCCEE
Confidence 46899999999999999999999999999998765310 000 01111111 1122 245555 4578
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..++.+...+.+.. .+++ .+.+|.|++|+|..|+...
T Consensus 233 ~~i~~~~~~v~v~~-~~g~--------~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 233 TAVEQDGDGVTLTL-DDGS--------TVTADVLLVATGRVPNGDL 269 (452)
T ss_pred EEEEEcCCeEEEEE-cCCC--------EEEcCEEEEeeccCcCCCC
Confidence 88876655555533 3455 7999999999999987753
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.6e-07 Score=82.28 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=30.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+||+||||||+||++|..|++.|++|+|||+++..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 68999999999999999999999999999987654
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.4e-06 Score=77.47 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=31.9
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|+|||||++||++|..|++.|++|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999997764
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.3e-06 Score=83.81 Aligned_cols=93 Identities=23% Similarity=0.391 Sum_probs=69.1
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----CCc---------HHHHHHHHHHhhhcCc
Q 018704 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFD---------DRLRHYATTQLSKSGV 299 (351)
Q Consensus 233 v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~----~~~---------~~~~~~~~~~l~~~gV 299 (351)
|+|||||+.|+.+|..|.++. ..+.+|+++.+.+.++ .++ .++.....+.+++.||
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~-----------~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv 69 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN-----------RHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGI 69 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC-----------CCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCC
Confidence 589999999999999887643 2347999999864321 111 1111122345677899
Q ss_pred EEEcC-eEEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 300 RLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 300 ~~~~~-~v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+++.+ +|+.++. ..|.+.+|+++++|.||+|||..|.
T Consensus 70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC
Confidence 99999 4888875 4688889989999999999999887
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=82.64 Aligned_cols=96 Identities=19% Similarity=0.307 Sum_probs=69.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC---C-Cc--------HHHHHHHHHHhhhcC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---S-FD--------DRLRHYATTQLSKSG 298 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~---~-~~--------~~~~~~~~~~l~~~g 298 (351)
++|+|||+|+.|+.+|..|.+... ..+.+|+++.+.+.++ . +. ..+.....+.+++.|
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~----------~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~g 73 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKAD----------AANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHG 73 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCC----------CCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCC
Confidence 389999999999999998875420 1347999998864321 0 11 111112234566789
Q ss_pred cEEEcCe-EEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 299 VRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 299 V~~~~~~-v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
|+++.++ |..++. ..|.+.+|+++++|.+|+|||.+|.
T Consensus 74 I~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 74 IKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW 114 (847)
T ss_pred CEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC
Confidence 9999995 888865 3567788889999999999999887
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.8e-06 Score=84.93 Aligned_cols=89 Identities=21% Similarity=0.252 Sum_probs=67.1
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
.++|+|+|||||++|+.+|..|++.| .+|+++++.+.+ |. ++.+......+.+++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--------------~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~ 602 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAG--------------HPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAH 602 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHc
Confidence 56789999999999999999999877 899999986321 22 2344555555677888
Q ss_pred CcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
||+++.+. + . +.+.+.+...+|.||+|||.++.
T Consensus 603 GVe~~~gt~V-d-----i~le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 603 GVKFEFGCSP-D-----LTVEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred CCEEEeCcee-E-----EEhhhheeccCCEEEECcCCCCC
Confidence 99999995 4 2 33344455669999999998754
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.5e-06 Score=78.30 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=31.7
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccC----ceEEEEcCCC
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSL----YDVVCVSPRN 95 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g----~~v~vie~~~ 95 (351)
.+.+||+||||||+|+++|..|++.| ++|+|+|+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 34589999999999999999999986 5799999864
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.5e-06 Score=79.00 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=67.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
+.+|+|||||+.|+.+|..|++.|.+|+|+++.+... . .+...+...........++.++. ..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-----~----------~~d~~~~~~~~~~l~~~gI~i~~~~~v 230 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-----R----------SFDSMISETITEEYEKEGINVHKLSKP 230 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-----c----------ccCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 4699999999999999999999999999999876531 0 01111222222223344676665 467
Q ss_pred eeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.+..+.. .+.+.. +++. ..+.+|.|++|+|..|+...
T Consensus 231 ~~i~~~~~~~~~v~~-~~g~-------~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 231 VKVEKTVEGKLVIHF-EDGK-------SIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred EEEEEeCCceEEEEE-CCCc-------EEEEcCEEEEeeCCCcCccc
Confidence 77765432 233322 2341 27999999999999988753
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.8e-06 Score=79.39 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=69.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+... . .+...+...........++.++.. .|
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-----~----------~~d~~~~~~l~~~l~~~GI~i~~~~~V 267 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-----R----------GFDDEMRAVVARNLEGRGINLHPRTNL 267 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-----c----------ccCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 4689999999999999999999999999999866421 0 011112222222233446776554 77
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..++.+.+.+.+.. .++. .+.+|.|++|+|..|....
T Consensus 268 ~~i~~~~~~~~v~~-~~g~--------~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 268 TQLTKTEGGIKVIT-DHGE--------EFVADVVLFATGRAPNTKR 304 (499)
T ss_pred EEEEEeCCeEEEEE-CCCc--------EEEcCEEEEeecCCCCCCC
Confidence 88876545554433 3455 7999999999999988753
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.5e-06 Score=78.59 Aligned_cols=103 Identities=18% Similarity=0.179 Sum_probs=67.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.++.. +. ....+...........++.++. ..+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-----~~----------~d~~~~~~l~~~l~~~gV~i~~~~~V 238 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-----PG----------TDTETAKTLQKALTKQGMKFKLGSKV 238 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-----CC----------CCHHHHHHHHHHHHhcCCEEEECcEE
Confidence 4789999999999999999999999999999876531 00 0111111111123334777664 478
Q ss_pred eeEeCCCCEEEEE--eecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCE--TVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~--~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..+..+...+.+. ...++. ...+.+|.|++|+|..|+..
T Consensus 239 ~~i~~~~~~v~v~~~~~~~g~------~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 239 TGATAGADGVSLTLEPAAGGA------AETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EEEEEcCCeEEEEEEEcCCCc------eeEEEeCEEEEccCCccccc
Confidence 8887654444332 111221 12799999999999988764
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-06 Score=84.80 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhcCcEEEcC-eEEEEeC-----CeEEecCCcEEeccEEEEecCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS-----QKLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~-~v~~v~~-----~~v~~~~g~~~~~D~vi~a~G~ 333 (351)
..+.+.+.+.+++.|++|+++ +|++|.. .+++..+|..+++|.||.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 467888999999999999999 4998863 2456666767899999998876
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=76.54 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=30.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||||||+|.|||+||..++ .|.+|+|||+...
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~ 37 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKL 37 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCC
Confidence 3579999999999999999985 6999999998654
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.7e-06 Score=79.60 Aligned_cols=89 Identities=21% Similarity=0.317 Sum_probs=67.1
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
...++|+|||||+.|+.+|..|.+.+ .+|+++++...+ +. .+.++.....+.+++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g--------------~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~ 203 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKG--------------YDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKL 203 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHc
Confidence 45579999999999999999998776 899999986422 21 3456777777888889
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCC
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
||+++.+... ...+.+.+.. +.+|.||+|||..
T Consensus 204 gv~~~~~~~v---~~~v~~~~~~-~~~d~vvlAtGa~ 236 (457)
T PRK11749 204 GVEIRTNTEV---GRDITLDELR-AGYDAVFIGTGAG 236 (457)
T ss_pred CCEEEeCCEE---CCccCHHHHH-hhCCEEEEccCCC
Confidence 9999999632 1223333333 7899999999985
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.3e-06 Score=78.31 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=69.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+++|||+|+.|+.+|..|++.|.+|+++++.+...-. ................++.++. .++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~---------------~d~~~~~~l~~~L~~~gV~i~~~~~v 241 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG---------------EDADAAEVLEEVFARRGMTVLKRSRA 241 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC---------------CCHHHHHHHHHHHHHCCcEEEcCCEE
Confidence 368999999999999999999999999999987653110 0111111222223345777664 477
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..++.+.+.+.+.. .++. .+.+|.|++|+|..|+...
T Consensus 242 ~~v~~~~~~~~v~~-~~g~--------~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 242 ESVERTGDGVVVTL-TDGR--------TVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EEEEEeCCEEEEEE-CCCc--------EEEecEEEEeecCCcCCCC
Confidence 88865555554433 3455 8999999999999988753
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-06 Score=82.02 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=32.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 47999999999999999999999999999998764
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.7e-06 Score=81.53 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=32.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47999999999999999999999999999998774
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-05 Score=67.85 Aligned_cols=86 Identities=24% Similarity=0.408 Sum_probs=58.7
Q ss_pred EEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCC-CC--------------CC-C--------------
Q 018704 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANE-IL--------------SS-F-------------- 282 (351)
Q Consensus 234 ~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-~l--------------~~-~-------------- 282 (351)
+|||||++|+-+|..|.+.+ .+ +.+++++. +. +. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--------------~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--------------IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----------------EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhCC--------------CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc
Confidence 69999999999999999877 56 88888752 10 00 0
Q ss_pred --------------cHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCC
Q 018704 283 --------------DDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 283 --------------~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~ 333 (351)
.+++.+.+++.+++.++++..+. |+++..+ .|.+.+++++.||.||+|||.
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---S
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeec
Confidence 02345667777888899999985 8888642 578888888999999999997
|
... |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.4e-05 Score=73.28 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhcCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+++.|++++.+ +|++++. + .+.+.+|+++.+|.||.|+|.++.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 45566677777789999999 4888764 2 466778989999999999998876
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-05 Score=78.57 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=65.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+. + . +...+.+.........++.++. ..+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il--~----------~---~d~~i~~~l~~~L~~~GV~i~~~~~V 301 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL--R----------K---FDETIINELENDMKKNNINIITHANV 301 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc--c----------c---CCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 5789999999999999999999999999999876521 0 0 0111111111122334666554 367
Q ss_pred eeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.+.. .+.+....++. .+.+|.|++|+|..|...
T Consensus 302 ~~I~~~~~~~v~v~~~~~~~--------~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 302 EEIEKVKEKNLTIYLSDGRK--------YEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred EEEEecCCCcEEEEECCCCE--------EEECCEEEECcCCCCCcc
Confidence 77765432 23332212233 799999999999888765
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-05 Score=76.34 Aligned_cols=99 Identities=20% Similarity=0.285 Sum_probs=68.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||+|+.|+.+|..|++.|.+|+|+++.+.+.-. . ...+...........++.++. ..+
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------~---~~~~~~~l~~~l~~~gV~v~~~~~v 222 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------E---DRDIADNIATILRDQGVDIILNAHV 222 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------c---CHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 468999999999999999999999999999997653100 0 011111112223345777664 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.++..+.+.. ++. ++.+|.|++|+|..|+..
T Consensus 223 ~~i~~~~~~v~v~~--~~g--------~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 223 ERISHHENQVQVHS--EHA--------QLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEEEcCCEEEEEE--cCC--------eEEeCEEEEeecCCcCCC
Confidence 88876665555532 223 688999999999998764
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.3e-06 Score=76.76 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=70.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEE-EEEEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYF-FLSHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v 140 (351)
..+++|||+|++||.+|..|++.|++|+++|..++....... ..+...........++.+ ....+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~--------------~~~~~~~~~~l~~~gi~~~~~~~~ 201 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD--------------PEVAEELAELLEKYGVELLLGTKV 201 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh--------------HHHHHHHHHHHHHCCcEEEeCCce
Confidence 479999999999999999999999999999998874321100 122222222344445665 45578
Q ss_pred eeEeCCCCEEEE--EeecCccccCCCceeEeeccEEEEecCCCcC
Q 018704 141 AGIDTDNHVVHC--ETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (351)
Q Consensus 141 ~~i~~~~~~v~~--~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~ 183 (351)
..++...+.... .....+. .+.+|.+++++|..|+
T Consensus 202 ~~i~~~~~~~~~~~~~~~~~~--------~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 202 VGVEGKGNTLVVERVVGIDGE--------EIKADLVIIGPGERPN 238 (415)
T ss_pred EEEEcccCcceeeEEEEeCCc--------EEEeeEEEEeeccccc
Confidence 888887665432 1223454 8999999999999885
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.4e-05 Score=71.71 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=66.2
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------------CCC-----CcHHHHHHHH
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSS-----FDDRLRHYAT 291 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------l~~-----~~~~~~~~~~ 291 (351)
+.++|+|||||+.|+.+|..+.+.+ .++.+++..+. ++. ..+.+.+.+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g--------------~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARAN--------------LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMH 70 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--------------CCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHH
Confidence 4469999999999999999999876 56777653211 011 1234566677
Q ss_pred HHhhhcCcEEEcCeEEEEeC--CeEEec-CCcEEeccEEEEecCCCCc
Q 018704 292 TQLSKSGVRLVRGIVKDVDS--QKLILN-DGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 292 ~~l~~~gV~~~~~~v~~v~~--~~v~~~-~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+...++++..++|.+++. +.+.+. +..++.+|.||+|||..|+
T Consensus 71 ~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 71 EHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASAR 118 (321)
T ss_pred HHHHHCCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCC
Confidence 77777788888877666643 444443 2346899999999999887
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.8e-05 Score=76.43 Aligned_cols=102 Identities=13% Similarity=0.171 Sum_probs=65.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhcc-chhhhcCCCeEEE-EEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARI-QPAISREPGSYFF-LSH 139 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 139 (351)
..+|+|||||+.|+.+|..|++.|.+|+|||+.+...- . +...+... ...+... +.++ ...
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~------------~---~d~~~~~~~~~~l~~~--v~i~~~~~ 236 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP------------A---ADKDIVKVFTKRIKKQ--FNIMLETK 236 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC------------c---CCHHHHHHHHHHHhhc--eEEEcCCE
Confidence 36899999999999999999999999999998775310 0 01111111 1112222 3433 346
Q ss_pred eeeEeCCCCEEEEEeec-CccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 140 CAGIDTDNHVVHCETVT-DELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~-~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
|+.+....+.+.+...+ ++. ..++.+|.||+|+|..|+...
T Consensus 237 v~~i~~~~~~~~v~~~~~~~~------~~~i~~D~vi~a~G~~pn~~~ 278 (471)
T PRK06467 237 VTAVEAKEDGIYVTMEGKKAP------AEPQRYDAVLVAVGRVPNGKL 278 (471)
T ss_pred EEEEEEcCCEEEEEEEeCCCc------ceEEEeCEEEEeecccccCCc
Confidence 77776554544443211 121 126999999999999988753
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.9e-05 Score=76.43 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=66.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||+|+.|+.+|..|++.|.+|+|+++...+.. ....+...........++.++. ..|
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~----------------~d~~~~~~l~~~L~~~GV~i~~~~~V 251 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR----------------EDPLLGETLTACFEKEGIEVLNNTQA 251 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc----------------chHHHHHHHHHHHHhCCCEEEcCcEE
Confidence 46899999999999999999999999999987432110 0011111112223344676664 577
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.+..+...+.+.. ++. ++.+|.||+|+|..|+...
T Consensus 252 ~~i~~~~~~~~v~~--~~g--------~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 252 SLVEHDDNGFVLTT--GHG--------ELRAEKLLISTGRHANTHD 287 (479)
T ss_pred EEEEEeCCEEEEEE--cCC--------eEEeCEEEEccCCCCCccC
Confidence 77776555555432 233 6889999999999987653
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.10 E-value=2e-05 Score=76.45 Aligned_cols=34 Identities=29% Similarity=0.278 Sum_probs=30.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..||||||+|.|||+||..+++.|. |+|+|+.+.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~ 35 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPV 35 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCC
Confidence 3699999999999999999999997 999998743
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.7e-06 Score=78.09 Aligned_cols=91 Identities=23% Similarity=0.278 Sum_probs=67.8
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--CCcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (351)
.+.++|+|||+|+.|+.+|..|.+.+ .+|+++++...+ + .++.++.....+.+++.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 196 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAG--------------HSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKL 196 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhC
Confidence 45579999999999999999998876 899999986311 2 24556666667778889
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCC-CCc
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~-~p~ 336 (351)
||+++.+.+. ...+.+.+. ..++|.||+|||. .|.
T Consensus 197 gv~~~~~~~v---~~~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 197 GVTFRMNFLV---GKTATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred CcEEEeCCcc---CCcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 9999999632 223444433 3469999999997 565
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.9e-05 Score=78.04 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=66.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+++...+. . ....+...........++.++. ..+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~------~----------~d~~~~~~l~~~l~~~gI~i~~~~~v 333 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF------R----------EDPAIGEAVTAAFRAEGIEVLEHTQA 333 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc------c----------cCHHHHHHHHHHHHHCCCEEEcCCEE
Confidence 4689999999999999999999999999999743211 0 0011111112223344666654 477
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..+..+...+.+.. ++. .+.+|.|++|+|..|+...
T Consensus 334 ~~i~~~~~~~~v~~--~~~--------~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 334 SQVAHVDGEFVLTT--GHG--------ELRADKLLVATGRAPNTRS 369 (561)
T ss_pred EEEEecCCEEEEEe--cCC--------eEEeCEEEEccCCCcCCCC
Confidence 77776555554432 233 6899999999999988753
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.2e-06 Score=81.93 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=34.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
..+||+|||||++||+||+.|++.|++|+|+|+.++..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G 40 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG 40 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 45799999999999999999999999999999988753
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.7e-05 Score=75.85 Aligned_cols=96 Identities=10% Similarity=0.165 Sum_probs=65.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. +...+...........++.++. ..+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--~~-------------~d~~~~~~l~~~l~~~gI~i~~~~~v 212 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN--KL-------------MDADMNQPILDELDKREIPYRLNEEI 212 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc--hh-------------cCHHHHHHHHHHHHhcCCEEEECCeE
Confidence 3689999999999999999999999999999877532 00 0111111222223344677654 577
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++. ..+.+ .+++ .+.+|.|++|+|..|+..
T Consensus 213 ~~i~~--~~v~~---~~g~--------~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 213 DAING--NEVTF---KSGK--------VEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred EEEeC--CEEEE---CCCC--------EEEeCEEEECcCCCcChH
Confidence 77763 34433 3455 789999999999988764
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-05 Score=77.61 Aligned_cols=93 Identities=19% Similarity=0.362 Sum_probs=67.1
Q ss_pred hcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcH-HHHHHHHHHhh
Q 018704 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDD-RLRHYATTQLS 295 (351)
Q Consensus 227 ~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~-~~~~~~~~~l~ 295 (351)
..+.++|+|||||+.|+.+|..|.+.+ .+|+++++...+ +. ++. .+.....+.++
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~ 202 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMG--------------YDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIK 202 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHH
Confidence 356789999999999999999999877 899999975321 11 222 25555667788
Q ss_pred hcCcEEEcCeEEEEeCCeEEecCC-cEEeccEEEEecCC-CCc
Q 018704 296 KSGVRLVRGIVKDVDSQKLILNDG-TEVPYGLLVWSTGV-GPS 336 (351)
Q Consensus 296 ~~gV~~~~~~v~~v~~~~v~~~~g-~~~~~D~vi~a~G~-~p~ 336 (351)
+.||+++.+... ...+.+.+. +.+.+|.||+|||. .|.
T Consensus 203 ~~gv~i~~~~~v---~~~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 203 KLGVKIETNVVV---GKTVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred HcCCEEEcCCEE---CCcCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 889999999632 122334333 33569999999997 565
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.9e-06 Score=81.49 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=32.6
Q ss_pred CcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMV 98 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~~ 98 (351)
++|+|||||+|||+||+.|++.| ++|+|+|++++..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 47999999999999999999987 8999999987753
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=74.58 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=62.8
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--------C--CcHHHHHHHHHHhhhcC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------S--FDDRLRHYATTQLSKSG 298 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~--------~--~~~~~~~~~~~~l~~~g 298 (351)
..++|+|||+|++|+++|..|.+.+ .+|+++++.+.+. . .+.+......+.+.+.|
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLG--------------YEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAG 82 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCC
Confidence 4469999999999999999998766 8999999964221 1 22233333445566779
Q ss_pred cEEEcCe-EEEEeC------CeEE--e--cCCcEEeccEEEEecCCC-Cc
Q 018704 299 VRLVRGI-VKDVDS------QKLI--L--NDGTEVPYGLLVWSTGVG-PS 336 (351)
Q Consensus 299 V~~~~~~-v~~v~~------~~v~--~--~~g~~~~~D~vi~a~G~~-p~ 336 (351)
++++.+. +..+.. +... . .++..+++|.||+|||.. |.
T Consensus 83 i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~ 132 (352)
T PRK12770 83 VVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSR 132 (352)
T ss_pred eEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCC
Confidence 9999995 543321 1111 1 112247899999999984 44
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.7e-06 Score=80.40 Aligned_cols=37 Identities=24% Similarity=0.488 Sum_probs=34.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~ 99 (351)
++|+|||||.|||+||+.|.+.|++|+|+|++++...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 4799999999999999999999999999999988643
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.9e-05 Score=76.46 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=68.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC------------CC----CcHHHHHHHHHHhh
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------SS----FDDRLRHYATTQLS 295 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l------------~~----~~~~~~~~~~~~l~ 295 (351)
.|+|||||+.|+.+|..+.+.+ .+|++++++.+. +. ....+.+.+.+.++
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g--------------~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~ 71 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAK--------------LDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQ 71 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHH
Confidence 8999999999999999998866 889999875321 11 12456677777788
Q ss_pred hcCcEEEcCeEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.|++++.++|..++.+ .+.+.+| ++.+|.||+|||.+|.
T Consensus 72 ~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 72 DFGVKFLQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred HcCCEEeccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence 88999987778777642 3445444 6899999999999887
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.6e-05 Score=75.78 Aligned_cols=100 Identities=13% Similarity=0.180 Sum_probs=64.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+++...+. . +...+.+.........++.++.. .+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~---~-------------~d~~~~~~l~~~l~~~GV~i~~~~~v 245 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR---G-------------FDRQCSEKVVEYMKEQGTLFLEGVVP 245 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc---c-------------CCHHHHHHHHHHHHHcCCEEEcCCeE
Confidence 3589999999999999999999999999998632110 0 01111111122233346766554 55
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..+......+.+.. .+++ ++.+|.|++|+|..|+...
T Consensus 246 ~~v~~~~~~~~v~~-~~g~--------~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 246 INIEKMDDKIKVLF-SDGT--------TELFDTVLYATGRKPDIKG 282 (499)
T ss_pred EEEEEcCCeEEEEE-CCCC--------EEEcCEEEEeeCCCCCccc
Confidence 56654433343332 3455 7899999999999988654
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.4e-05 Score=75.69 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=64.1
Q ss_pred CCcEEEECCchhHHHHHHhhhc---cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL- 137 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (351)
..+|+|||||+.|+.+|..++. .|.+|+|+++.+...- . +...+.+.........++.++.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~------------~---~d~~~~~~l~~~L~~~GI~i~~~ 251 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR------------G---FDSTLRKELTKQLRANGINIMTN 251 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc------------c---cCHHHHHHHHHHHHHcCCEEEcC
Confidence 4689999999999999976654 4999999998776310 0 1111111212223334666655
Q ss_pred EEeeeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 138 SHCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 138 ~~v~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.+..+.. ...+.. .++. .+.+|.|++|+|..|+..
T Consensus 252 ~~v~~i~~~~~~~~~v~~-~~g~--------~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 252 ENPAKVTLNADGSKHVTF-ESGK--------TLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred CEEEEEEEcCCceEEEEE-cCCC--------EEEcCEEEEeeCCCcCcc
Confidence 46777765422 223322 3454 799999999999988765
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.8e-05 Score=74.90 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=66.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEE-EEEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 140 (351)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+...- . ....+........... +.++ ...+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--~-------------~d~~~~~~~~~~l~~~-I~i~~~~~v 232 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP--L-------------EDPEVSKQAQKILSKE-FKIKLGAKV 232 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc--c-------------hhHHHHHHHHHHHhhc-cEEEcCCEE
Confidence 47899999999999999999999999999999775320 0 0111111111112223 5544 3577
Q ss_pred eeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..++.+.+ .+.+.. .+++ ...+.+|.|++|+|..|+...
T Consensus 233 ~~i~~~~~~~v~~~~-~~~~------~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 233 TSVEKSGDEKVEELE-KGGK------TETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred EEEEEcCCceEEEEE-cCCc------eEEEEeCEEEEccCCccCCCC
Confidence 77765543 344321 1221 127999999999999888763
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.6e-06 Score=79.23 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=33.0
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
++|+|+|||.|||+||++|+++|++|+|+|.++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~ 35 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCcc
Confidence 48999999999999999999999999999998874
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=81.97 Aligned_cols=92 Identities=21% Similarity=0.387 Sum_probs=69.0
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--------CCC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--------LSS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------l~~--~~~~~~~~~~~~l~~~ 297 (351)
.++++|+|||||+.|+.+|..|.+.| .+|+++++... ++. ++.++.....+.+++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~ 494 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRG--------------YDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKL 494 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHC
Confidence 46789999999999999999999877 89999998531 121 2455666666778889
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCC-CCc
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~-~p~ 336 (351)
||+++.+... ...+.+++..+..+|.||+|||. .|.
T Consensus 495 gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 495 GVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred CCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 9999998633 23355555455679999999998 465
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.9e-05 Score=73.26 Aligned_cols=91 Identities=24% Similarity=0.421 Sum_probs=66.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--C-C---------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--S-S--------------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--~-~--------------------------- 281 (351)
.|+|||||++|+-+|..|++.| .+|.++++.+.. + .
T Consensus 30 DVvIVGaGpAGLalA~~La~~G--------------l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~ 95 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAG--------------LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVY 95 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEE
Confidence 8999999999999999998755 667777664210 0 0
Q ss_pred ---------------C-cHHHHHHHHHHhhhcCcEEEcCeEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 282 ---------------F-DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 282 ---------------~-~~~~~~~~~~~l~~~gV~~~~~~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+ ...+.+.+.+.+.+.||+++..+|++++.+ .|.+++|.++++|.||.|+|..+.
T Consensus 96 ~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 96 IDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred EeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0 122334555666778999987778887642 577789989999999999998764
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.1e-05 Score=84.18 Aligned_cols=91 Identities=20% Similarity=0.393 Sum_probs=67.8
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhcC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKSG 298 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~g 298 (351)
++++|+|||||+.|+.+|..|++.| .+|+++++.+.+ +. .+.++.....+.+++.|
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G--------------~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~G 494 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYG--------------VDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIG 494 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCC
Confidence 4689999999999999999999887 899999986422 21 35677777778889999
Q ss_pred cEEEcCeEEEEeCCeEEecCCc-EEeccEEEEecCCC-Cc
Q 018704 299 VRLVRGIVKDVDSQKLILNDGT-EVPYGLLVWSTGVG-PS 336 (351)
Q Consensus 299 V~~~~~~v~~v~~~~v~~~~g~-~~~~D~vi~a~G~~-p~ 336 (351)
|+++++.+.+ ..+.+.+-. ...+|.||+|||.. |.
T Consensus 495 v~~~~~~~vg---~~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 495 VKIETNKVIG---KTFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred CEEEeCCccC---CccCHHHHhhccCCCEEEEecCCCCCC
Confidence 9999996432 223332211 24589999999984 55
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.5e-05 Score=76.56 Aligned_cols=92 Identities=21% Similarity=0.279 Sum_probs=63.4
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------CCCc--HHHHHHHHHHhhh
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SSFD--DRLRHYATTQLSK 296 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---------~~~~--~~~~~~~~~~l~~ 296 (351)
...++|+|||+|+.|+.+|..|.... .+.+|+++++.+.+ |... ..+...+.+.+..
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~------------~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~ 91 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAH------------DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATD 91 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhC------------CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHH
Confidence 34569999999999999999997511 23899999997422 1111 2344455666777
Q ss_pred cCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 297 SGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+|+++.+. + +..+.+.+-. ..+|.||+|+|..+.
T Consensus 92 ~~v~~~~nv~v----g~dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 92 DRVSFFGNVTL----GRDVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred CCeEEEcCEEE----CccccHHHHh-hhCCEEEEecCCCCC
Confidence 889998874 3 2234444432 469999999998764
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.8e-05 Score=75.23 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=63.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Eee
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (351)
.+++|||||+.|+.+|..|++.|.+|+|+++...+. . +...+...........++.++.. .+.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~---~-------------~d~~~~~~l~~~L~~~gV~i~~~~~v~ 244 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR---G-------------FDQDCANKVGEHMEEHGVKFKRQFVPI 244 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc---c-------------cCHHHHHHHHHHHHHcCCEEEeCceEE
Confidence 579999999999999999999999999998732110 0 01111112122233446776654 455
Q ss_pred eEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 142 ~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
.+......+.++. .++. ...++.+|.|++|+|..|+...
T Consensus 245 ~v~~~~~~~~v~~-~~~~-----~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 245 KVEQIEAKVKVTF-TDST-----NGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred EEEEcCCeEEEEE-ecCC-----cceEEEeCEEEEEecCCcCCCc
Confidence 6654444433322 1221 0127899999999999887653
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=5e-06 Score=77.90 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=30.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
.||+||||||+|+++|..|++.|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 68999999999999999999999999999975
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.2e-05 Score=70.85 Aligned_cols=88 Identities=28% Similarity=0.469 Sum_probs=61.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-C-C--C---CC-----------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-I--L---SS----------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~--l---~~----------------------- 281 (351)
.|+|||||..|+|.|..+++.| .+|.++... + + + +.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G--------------~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~ 66 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMG--------------AKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA 66 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----------------EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH
Confidence 4899999999999999999988 888888432 2 1 1 10
Q ss_pred -------------------------Cc-HHHHHHHHHHhhh-cCcEEEcCeEEEEeC-----CeEEecCCcEEeccEEEE
Q 018704 282 -------------------------FD-DRLRHYATTQLSK-SGVRLVRGIVKDVDS-----QKLILNDGTEVPYGLLVW 329 (351)
Q Consensus 282 -------------------------~~-~~~~~~~~~~l~~-~gV~~~~~~v~~v~~-----~~v~~~~g~~~~~D~vi~ 329 (351)
.| ....+.+.+.+++ .+++++.++|+++.. .+|.+.+|..+.+|.||+
T Consensus 67 aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVl 146 (392)
T PF01134_consen 67 ADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVL 146 (392)
T ss_dssp HHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE
T ss_pred HhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEE
Confidence 01 1123444455555 689999888988853 378899999999999999
Q ss_pred ecCC
Q 018704 330 STGV 333 (351)
Q Consensus 330 a~G~ 333 (351)
|||.
T Consensus 147 aTGt 150 (392)
T PF01134_consen 147 ATGT 150 (392)
T ss_dssp -TTT
T ss_pred eccc
Confidence 9998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.4e-06 Score=79.73 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeE--EecCCcEEeccEEEEecCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKL--ILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v--~~~~g~~~~~D~vi~a~G~ 333 (351)
..+.+.+.+.+++.|++++.+. |++++. +++ ...+|..+++|.||+|++.
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCH
Confidence 4677888888989999999995 888863 333 3456778999999999975
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=7e-05 Score=65.19 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=31.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccC------ceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL------YDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g------~~v~vie~~~~~ 97 (351)
.++|+|||||..|..+|++|++.+ .+|+|||...-.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA 51 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIA 51 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccc
Confidence 379999999999999999999866 789999976543
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=5e-06 Score=78.97 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+||+|||||++||++|..|++.|++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4899999999999999999999999999998764
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.5e-06 Score=77.35 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+.||+|||||++|+.+|+.|++.|++|+|+|+.+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 36999999999999999999999999999996544
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.4e-05 Score=72.13 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=66.1
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-----CC------------------------
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-----IL------------------------ 279 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~l------------------------ 279 (351)
..++|+|||||.+|+-+|..|.+.| .+|++++++. +.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G--------------~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y 74 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREG--------------HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVY 74 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcC--------------CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhh
Confidence 3469999999999999999998765 7788887742 10
Q ss_pred -----------------CC-------------C--cHHHHHHHHHHhhhcCcE--EEcC-eEEEEeC--C--eEEecCC-
Q 018704 280 -----------------SS-------------F--DDRLRHYATTQLSKSGVR--LVRG-IVKDVDS--Q--KLILNDG- 319 (351)
Q Consensus 280 -----------------~~-------------~--~~~~~~~~~~~l~~~gV~--~~~~-~v~~v~~--~--~v~~~~g- 319 (351)
|. + ..++.++++++++..|+. +..+ +|++++. + .|.+.++
T Consensus 75 ~~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~ 154 (461)
T PLN02172 75 ESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSG 154 (461)
T ss_pred hhhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCC
Confidence 00 0 034667777778888887 7777 4888864 2 3444432
Q ss_pred -c--EEeccEEEEecC--CCCc
Q 018704 320 -T--EVPYGLLVWSTG--VGPS 336 (351)
Q Consensus 320 -~--~~~~D~vi~a~G--~~p~ 336 (351)
. +..+|.||+|+| ..|+
T Consensus 155 ~~~~~~~~d~VIvAtG~~~~P~ 176 (461)
T PLN02172 155 GFSKDEIFDAVVVCNGHYTEPN 176 (461)
T ss_pred CceEEEEcCEEEEeccCCCCCc
Confidence 2 357999999999 4565
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.4e-05 Score=75.21 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=58.1
Q ss_pred HHHHhhhcCCC-CccEEEEEeCCCCCCCCcH-HHHHHHHHHhhhcCcEEEcCe-EEEEeC-----CeEEecCCcEEeccE
Q 018704 255 RDVRQRYSHVK-DYIHVTLIEANEILSSFDD-RLRHYATTQLSKSGVRLVRGI-VKDVDS-----QKLILNDGTEVPYGL 326 (351)
Q Consensus 255 ~~~~~~~~~~~-~~~~v~~~~~~~~l~~~~~-~~~~~~~~~l~~~gV~~~~~~-v~~v~~-----~~v~~~~g~~~~~D~ 326 (351)
.+.++.||.+. ++..-.+..+.+ ..+|| .+-+.+...+++.|+.++.+. |+++.- .+|.+.-|. +++.+
T Consensus 158 ee~~~~~pLLn~d~v~g~Ly~P~D--G~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~ 234 (856)
T KOG2844|consen 158 EETQELFPLLNVDDVYGGLYSPGD--GVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETEC 234 (856)
T ss_pred HHHHHhCcccchhHheeeeecCCC--cccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecce
Confidence 34555666644 344445554432 12343 556677778888999999995 888753 368887774 99999
Q ss_pred EEEecCCCCccccccCCC
Q 018704 327 LVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 327 vi~a~G~~p~~~~~~~gl 344 (351)
||-|+|++.++.-...|+
T Consensus 235 ~VNaaGvWAr~Vg~m~gv 252 (856)
T KOG2844|consen 235 VVNAAGVWAREVGAMAGV 252 (856)
T ss_pred EEechhHHHHHhhhhcCC
Confidence 999999998744333333
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=97.99 E-value=2e-05 Score=81.30 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=65.0
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
...++|+|||||+.|+.+|..|++.| .+|+++++.+.+ |. .+.+......+.+.+.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G--------------~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~ 600 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAG--------------HPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFH 600 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhc
Confidence 45679999999999999999999877 899999986321 21 2344555555667788
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
||+++.|.-. .+.+.+.+...+|.||+|||.++.
T Consensus 601 GVe~~~g~~~-----d~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 601 GVEFKYGCSP-----DLTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred CcEEEEeccc-----ceEhhhhhcccccEEEECCCCCCC
Confidence 9999888311 122333445669999999998754
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.7e-06 Score=80.02 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=34.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc-CceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~-g~~v~vie~~~~~~ 98 (351)
..+||+|||||++||+||++|.+. |++|+|+|++++..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 346899999999999999999999 99999999988753
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.2e-06 Score=79.71 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=33.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.||||||||++||+||..|++.|++|+|+|+++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 68999999999999999999999999999998765
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.96 E-value=7e-06 Score=79.15 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=32.9
Q ss_pred CcEEEECCchhHHHHHHhhhcc----CceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS----LYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~----g~~v~vie~~~~~ 97 (351)
+||+|||||++||+||+.|++. |++|+|+|++++.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV 41 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence 6899999999999999999998 9999999998875
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=8e-06 Score=76.74 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=34.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+++||+|||||.+|+++|++|++.|.+|+++|++...
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 5689999999999999999999999999999987653
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.95 E-value=8e-06 Score=69.26 Aligned_cols=91 Identities=29% Similarity=0.445 Sum_probs=63.0
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----CCCcH-----------HHH--H--HHHH
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDD-----------RLR--H--YATT 292 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l----~~~~~-----------~~~--~--~~~~ 292 (351)
+|+|||||+.|+.+|..|.+.+ .+++++++.... ..+.. ... . .+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~--------------~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG--------------AKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVD 66 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCC--------------CeEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 5899999999999999999765 899999765311 10000 011 1 3344
Q ss_pred HhhhcCcEEEcC-eEEEEeC--Ce-------E---EecCCcEEeccEEEEecCCCCc
Q 018704 293 QLSKSGVRLVRG-IVKDVDS--QK-------L---ILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 293 ~l~~~gV~~~~~-~v~~v~~--~~-------v---~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+...+++++.+ ++.+++. .. + ...++.++.+|.||+|+|..|+
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc
Confidence 457789999777 4777754 21 1 2235567999999999998877
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.7e-05 Score=75.07 Aligned_cols=90 Identities=17% Similarity=0.265 Sum_probs=66.2
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--CCcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (351)
.+.++|+|||+|++|+.+|..|.+.| .+|+++++.+.+ + .++.++.....+.+++.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G--------------~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~ 204 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAG--------------VQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAM 204 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHC
Confidence 45679999999999999999998876 889999886422 2 13456666666778889
Q ss_pred CcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
||+++.+. +.. .+.+.+ ....+|.||+|||..+.
T Consensus 205 Gv~~~~~~~v~~----~~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 205 GIEFHLNCEVGR----DISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred CCEEECCCEeCC----ccCHHH-HHhcCCEEEEEeCCCCC
Confidence 99999985 421 122221 22479999999998764
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.2e-06 Score=78.08 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=30.2
Q ss_pred CcEEEECCchhHHHHHHhhhc----cCceEEEEcCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPR 94 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~----~g~~v~vie~~ 94 (351)
+||+||||||+|+++|..|++ .|++|+|||++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 589999999999999999998 89999999984
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.8e-06 Score=79.46 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=32.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45899999999999999999999999999999875
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=1e-05 Score=78.77 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=33.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||+|||||..|+++|+.|+++|++|+|||+++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 458999999999999999999999999999998643
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.1e-05 Score=75.01 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=32.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+||+|||||++|+++|..|++.|.+|+|+|++++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 68999999999999999999999999999997664
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.6e-06 Score=76.72 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=32.3
Q ss_pred CcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~ 97 (351)
++|+|||||++||+||++|++.+ .+++|+|++++.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 47999999999999999999998 999999998764
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.3e-05 Score=74.85 Aligned_cols=85 Identities=24% Similarity=0.285 Sum_probs=64.4
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~ 308 (351)
.++|+|||+|.+|+++|..|...| .+|+++++.+ ......+.+.+++.||+++.+. +.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G--------------~~V~~~d~~~------~~~~~~~~~~l~~~gv~~~~~~~~~- 74 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELG--------------ARVTVVDDGD------DERHRALAAILEALGATVRLGPGPT- 74 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCc------hhhhHHHHHHHHHcCCEEEECCCcc-
Confidence 358999999999999999998877 8899998753 1233445567888899999884 32
Q ss_pred EeCCeEEecCCcEEeccEEEEecCCCCc-cc---cccCCCCC
Q 018704 309 VDSQKLILNDGTEVPYGLLVWSTGVGPS-TL---VKSLDLPK 346 (351)
Q Consensus 309 v~~~~v~~~~g~~~~~D~vi~a~G~~p~-~~---~~~~gl~~ 346 (351)
....+|.||+++|..|+ ++ +++.|+++
T Consensus 75 -----------~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v 105 (480)
T PRK01438 75 -----------LPEDTDLVVTSPGWRPDAPLLAAAADAGIPV 105 (480)
T ss_pred -----------ccCCCCEEEECCCcCCCCHHHHHHHHCCCee
Confidence 12459999999999999 65 34556654
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.4e-05 Score=73.78 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=65.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+... . .+...+...........++.++. ..+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-----~----------~~d~~~~~~l~~~L~~~GV~i~~~~~v 316 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-----R----------GFDEEVRDFVAEQMSLRGIEFHTEESP 316 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-----c----------ccCHHHHHHHHHHHHHCCcEEEeCCEE
Confidence 4699999999999999999999999999999876521 0 01122222222223345777664 467
Q ss_pred eeEeCC-CCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTD-NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~-~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..+... ...+.+.. .++. ...+|.||+|+|..|+..
T Consensus 317 ~~i~~~~~g~v~v~~-~~g~--------~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 317 QAIIKSADGSLSLKT-NKGT--------VEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EEEEEcCCCEEEEEE-CCeE--------EEecCEEEEeeccccCCC
Confidence 777542 33344432 2232 455899999999988765
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.1e-05 Score=77.78 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=32.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||||||+|++||+||+.+++.|.+|+|||+.+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35799999999999999999999999999999875
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.2e-05 Score=78.25 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=33.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++||+|||||+.|+++|+.|+++|++|+|||+++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~ 40 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDL 40 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 458999999999999999999999999999998753
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.7e-05 Score=69.80 Aligned_cols=104 Identities=18% Similarity=0.336 Sum_probs=76.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE-e
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH-C 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 140 (351)
...|+|+|+|..|+.+|..|...+.+||+|++++... ..-+...+.+....+.+..++.++.+. +
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~--------------~~lf~~~i~~~~~~y~e~kgVk~~~~t~~ 278 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL--------------PRLFGPSIGQFYEDYYENKGVKFYLGTVV 278 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch--------------hhhhhHHHHHHHHHHHHhcCeEEEEecce
Confidence 4679999999999999999999999999999977531 112334455555666777889988764 4
Q ss_pred eeEeCCC--CEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCC
Q 018704 141 AGIDTDN--HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (351)
Q Consensus 141 ~~i~~~~--~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~ 188 (351)
.++.... +...+ .+.++. .+.+|-||+.+|+.|......
T Consensus 279 s~l~~~~~Gev~~V-~l~dg~--------~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 279 SSLEGNSDGEVSEV-KLKDGK--------TLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred eecccCCCCcEEEE-EeccCC--------EeccCeEEEeecccccccccc
Confidence 4444333 33333 446676 999999999999999988655
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.1e-05 Score=79.80 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=33.3
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+.+|+|||||++||++|..|++.|++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999865
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.1e-05 Score=68.57 Aligned_cols=105 Identities=16% Similarity=0.236 Sum_probs=75.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (351)
.+.+++|||||..||..+.--.+.|.+||++|-.++. +. . +...+......+....++.|.. .+
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i---------~~-~-----mD~Eisk~~qr~L~kQgikF~l~tk 274 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQI---------GG-V-----MDGEISKAFQRVLQKQGIKFKLGTK 274 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhh---------cc-c-----cCHHHHHHHHHHHHhcCceeEeccE
Confidence 4578999999999999999999999999999986552 11 1 1122333333345556777765 48
Q ss_pred eeeEeCCCC-E--EEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 140 CAGIDTDNH-V--VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 140 v~~i~~~~~-~--v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
|.++..... . +.++...+++ +.++.+|.+.+|+|.+|..-+
T Consensus 275 v~~a~~~~dg~v~i~ve~ak~~k------~~tle~DvlLVsiGRrP~t~G 318 (506)
T KOG1335|consen 275 VTSATRNGDGPVEIEVENAKTGK------KETLECDVLLVSIGRRPFTEG 318 (506)
T ss_pred EEEeeccCCCceEEEEEecCCCc------eeEEEeeEEEEEccCcccccC
Confidence 888887766 4 4444444444 458999999999999988764
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.2e-05 Score=74.16 Aligned_cols=110 Identities=12% Similarity=0.029 Sum_probs=67.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchh-hhcCCCeEEEE-EE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPA-ISREPGSYFFL-SH 139 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~ 139 (351)
..+|+|||||+.|+..|..|++.|.+|+|||+.+++.- . +...+...... +....++.++. ..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~------------~---~d~eis~~l~~~ll~~~GV~I~~~~~ 376 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP------------L---LDADVAKYFERVFLKSKPVRVHLNTL 376 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc------------c---CCHHHHHHHHHHHhhcCCcEEEcCCE
Confidence 46899999999999999999999999999999776320 0 11112222111 22334666654 46
Q ss_pred eeeEeCCCC--EEEEEeecC--cccc----CCCceeEeeccEEEEecCCCcCCCC
Q 018704 140 CAGIDTDNH--VVHCETVTD--ELRT----LEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 140 v~~i~~~~~--~v~~~~~~~--~~~~----~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
|..++.+.. .+.+...+. ++.. ...+..++.+|.|++|+|..|+...
T Consensus 377 V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 377 IEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 777765442 244322110 1000 0001137999999999999988754
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.3e-05 Score=76.16 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=30.3
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
||||||+|.|||+||+.+++.|.+|+|||+.+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~ 34 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRL 34 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccc
Confidence 7999999999999999999999999999998763
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.4e-05 Score=79.58 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=32.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||||||||.|||+||..+++.|.+|+|||+..
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~ 83 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 83 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 45799999999999999999999999999999764
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.5e-05 Score=76.04 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=33.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+..+||||||+|.||++||+.+++.|.+|+|||+.+.
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~ 95 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV 95 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 3468999999999999999999999999999998764
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.9e-05 Score=74.30 Aligned_cols=91 Identities=23% Similarity=0.332 Sum_probs=65.4
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
..+++|+|||+|++|+.+|..|.+.+ .+|+++++...+ +. ++.++.....+.+++.
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g--------------~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAG--------------HTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAE 206 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhC
Confidence 45579999999999999999998876 889999886421 21 3455666666778889
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCC-Cc
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~-p~ 336 (351)
||+++.+.....+ +.. ++...++|.||+|||.. |.
T Consensus 207 Gv~~~~~~~v~~~---~~~-~~~~~~~d~VilAtGa~~~~ 242 (485)
T TIGR01317 207 GIDFVTNTEIGVD---ISA-DELKEQFDAVVLAGGATKPR 242 (485)
T ss_pred CCEEECCCEeCCc---cCH-HHHHhhCCEEEEccCCCCCC
Confidence 9999999622211 111 12235799999999987 44
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00014 Score=65.73 Aligned_cols=90 Identities=24% Similarity=0.389 Sum_probs=69.2
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCCC------------CCC-----CcHHHHHHHHHH
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEI------------LSS-----FDDRLRHYATTQ 293 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~------------l~~-----~~~~~~~~~~~~ 293 (351)
.|+|||||+.|+-.|-++.+.+ .+ +.+++.... .|. ..+++.+.+.++
T Consensus 5 DviIIG~GPAGl~AAiya~r~~--------------l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~ 70 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAG--------------LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQ 70 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHH
Confidence 8999999999999999999876 55 444444210 122 346788888888
Q ss_pred hhhcCcEEEcCeEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 294 LSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 294 l~~~gV~~~~~~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
....++++....|..++.. .|.+.+|. ++++.||+|||..+.
T Consensus 71 a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 71 AEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred HhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence 8889999999778888765 35556666 999999999998877
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.87 E-value=1e-05 Score=78.83 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEEEEecCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
..+.+.+.+.+++.|++++.++ |.++.. + +|++.+|+++.+|.||+|++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 4677888888999999999994 888753 3 5777888889999999998853
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.2e-05 Score=78.40 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=32.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhc-cCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie~~~~ 96 (351)
...||+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 35799999999999999999999 4999999997653
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.1e-05 Score=77.01 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=34.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+++|+|||||++||++|+.|++.|++|+|+|+.+..
T Consensus 73 g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~ 110 (569)
T PLN02487 73 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFI 110 (569)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCC
Confidence 34579999999999999999999999999999988764
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.4e-05 Score=77.20 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=31.9
Q ss_pred CcEEEECCchhHHHHHHhhhcc------CceEEEEcCCCccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS------LYDVVCVSPRNHMV 98 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~------g~~v~vie~~~~~~ 98 (351)
++|+|||||++||+||+.|++. |++|+|+|++++..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 5799999999999999999985 48999999988753
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.2e-05 Score=72.65 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=31.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
...+||||||||.||..||...+|.|.+.+++-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 35689999999999999999999999999988754
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.9e-05 Score=77.13 Aligned_cols=37 Identities=30% Similarity=0.595 Sum_probs=33.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccC-----ceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSL-----YDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g-----~~v~vie~~~~~ 97 (351)
+.+||+|||||++||+||..|++.| ++|+|+|++...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 3479999999999999999999877 899999998765
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.5e-05 Score=73.67 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=64.4
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--------C--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------S--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~--------~--~~~~~~~~~~~~l~~~ 297 (351)
...++|+|||+|+.|+.+|..|.+.+ .+|+++++...+. . ++.++.....+.+.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~ 206 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAG--------------HKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAE 206 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhC
Confidence 45679999999999999999999876 8899999864221 1 2445555566678888
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCC
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
||+++.++....+ +.. +.....+|.||+|||..
T Consensus 207 gv~~~~~~~v~~~---~~~-~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 207 GIEFRTNVEVGKD---ITA-EELLAEYDAVFLGTGAY 239 (471)
T ss_pred CcEEEeCCEECCc---CCH-HHHHhhCCEEEEecCCC
Confidence 9999999633221 111 11235799999999997
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.6e-05 Score=77.39 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEEEEecCCCCc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..+.+.+.+.+++.|++++.++ |+++.. + +|.+.+|+++++|.||+++|....
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDT 287 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence 4677888899999999999995 888753 2 677888989999999999986543
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.1e-05 Score=65.31 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=33.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhh--ccCceEEEEcCCCccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGID--TSLYDVVCVSPRNHMV 98 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~--~~g~~v~vie~~~~~~ 98 (351)
...+|+||||||..|++.|++|. ..+.+|.|+|+...+.
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 45699999999999999999985 4699999999987754
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.3e-05 Score=69.81 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=30.6
Q ss_pred CcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMV 98 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~~~ 98 (351)
+|+||||+|++|..+|.+|++.+ .+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 59999999999999999999987 7999999987643
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.6e-05 Score=76.54 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=32.4
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
+|+|||||++||+||+.|.+.|++|+|+|+.+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~G 35 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLG 35 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 58999999999999999999999999999987643
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=3e-05 Score=75.34 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=33.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||||||+|.|||+||+.+++.|.+|+|+|+....
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~ 55 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA 55 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4689999999999999999999999999999987653
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.6e-05 Score=72.28 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=36.8
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~ 100 (351)
....||+|||+|.+||++|+.|.+.|++|+|+|.+++...+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 34589999999999999999999999999999998887544
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.5e-05 Score=69.91 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=30.3
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
||+|||+|.|||++|..|.+. ++|+|+.+.+.-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999999 999999976554
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.80 E-value=2e-05 Score=71.83 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=32.1
Q ss_pred CCCCCcEEEECCchhHHHHHHhhhc------cCceEEEEcCCCcc
Q 018704 59 ANEKPRVVVLGSGWAGCRLMKGIDT------SLYDVVCVSPRNHM 97 (351)
Q Consensus 59 ~~~~~~VvIIG~G~aGl~aA~~L~~------~g~~v~vie~~~~~ 97 (351)
....+||+|||||||||+||++|.+ ..++|+|+|+....
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~ 117 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEV 117 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeecccc
Confidence 3456899999999999999999965 35689999976543
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00026 Score=63.63 Aligned_cols=91 Identities=25% Similarity=0.387 Sum_probs=66.5
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~------------------------------ 281 (351)
.|+|||||.+|+-+|..|++.| .+|+++++......
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g--------------~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 67 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKG--------------LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGAR 67 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEE
Confidence 6999999999999999998766 78888887632100
Q ss_pred --------------------Cc-HHHHHHHHHHhhhcCcEEEcC-eEEEEe--CCe--EEecC-CcEEeccEEEEecCCC
Q 018704 282 --------------------FD-DRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK--LILND-GTEVPYGLLVWSTGVG 334 (351)
Q Consensus 282 --------------------~~-~~~~~~~~~~l~~~gV~~~~~-~v~~v~--~~~--v~~~~-g~~~~~D~vi~a~G~~ 334 (351)
++ ..+.+.+.+.+++.|++++.+ +++++. +++ +.+.+ +.++++|.||.|+|..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 68 FFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred EEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 11 245566777788889999998 487754 343 33343 4579999999999986
Q ss_pred Cc
Q 018704 335 PS 336 (351)
Q Consensus 335 p~ 336 (351)
..
T Consensus 148 s~ 149 (295)
T TIGR02032 148 SI 149 (295)
T ss_pred hH
Confidence 54
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.1e-05 Score=76.12 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=66.0
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
...++|+|||+|+.|+.+|..|.+.| .+|+++++...+ +. ++.++.....+.+.+.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 256 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKG--------------HDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAM 256 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHc
Confidence 45679999999999999999999876 889999986422 21 3455666666778888
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
|++++.+...+.+ +.+.+. ...+|.||+|||..+.
T Consensus 257 Gv~i~~~~~v~~d---v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 257 GAEFRFNTVFGRD---ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred CCEEEeCCcccCc---cCHHHH-HhhcCEEEEEcCCCCC
Confidence 9999998643221 222222 2359999999998753
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.9e-05 Score=74.69 Aligned_cols=90 Identities=14% Similarity=0.271 Sum_probs=66.3
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
.++++|+|||+|++|+.+|..|.+.| .+|+++++.+.+ +. ++..+.+...+.+++.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 373 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAG--------------VQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAM 373 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcC--------------CcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHC
Confidence 35789999999999999999999877 889999987422 11 4556666666778889
Q ss_pred CcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
||+++.+. +.. .+.+.+ ....+|.||+|+|..+.
T Consensus 374 Gv~~~~~~~v~~----~~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 374 GIDFHLNCEIGR----DITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred CeEEEcCCccCC----cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 99999985 421 122222 23468999999998643
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00017 Score=67.92 Aligned_cols=92 Identities=21% Similarity=0.195 Sum_probs=64.0
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCC------CcHHHHHHHHH-----------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS------FDDRLRHYATT----------- 292 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~------~~~~~~~~~~~----------- 292 (351)
.+|+|||||.+|+.+|..|.+.| .+|+++++.+ .... +.+...+.+.+
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~ 72 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAG--------------WDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGV 72 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccccc
Confidence 38999999999999999999876 8899998863 2211 12222222221
Q ss_pred --------------------------------Hhhh--cCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCC
Q 018704 293 --------------------------------QLSK--SGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 293 --------------------------------~l~~--~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~ 333 (351)
.|.+ .+++++.+. |++++. + .+.+++|+++.+|.||.|-|.
T Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~ 152 (386)
T PRK07236 73 PSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGG 152 (386)
T ss_pred CccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC
Confidence 1111 135688884 888864 2 367789999999999999997
Q ss_pred CCc
Q 018704 334 GPS 336 (351)
Q Consensus 334 ~p~ 336 (351)
...
T Consensus 153 ~S~ 155 (386)
T PRK07236 153 RST 155 (386)
T ss_pred Cch
Confidence 665
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.2e-05 Score=77.66 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=35.0
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
...++|+|||||++||+||..|++.|++|+|+|++++..
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G 196 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPG 196 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCc
Confidence 346799999999999999999999999999999987643
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=66.53 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=73.0
Q ss_pred CCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc-------hh----hhh----hhc---------c-----
Q 018704 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------PL----LAS----TCV---------G----- 109 (351)
Q Consensus 59 ~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~-------~~----~~~----~~~---------~----- 109 (351)
.+...||+|||||.+|-+.|+.|++.|.+|.|||++-..+-+ |. +.. -|. |
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk 121 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK 121 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe
Confidence 355689999999999999999999999999999965221100 00 000 000 0
Q ss_pred ------cccc------------cccccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEE---EEeecCccccCCCceeE
Q 018704 110 ------TLEF------------RSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVH---CETVTDELRTLEPWKFK 168 (351)
Q Consensus 110 ------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~---~~~~~~~~~~~~~~~~~ 168 (351)
.+.+ ..-...+++.++.....+++.+..+.|+.+-.++..+. ..+ +.++ ..+
T Consensus 122 ~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~-k~ge------e~~ 194 (509)
T KOG1298|consen 122 DGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKN-KEGE------EVE 194 (509)
T ss_pred CCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEec-CCCc------eEE
Confidence 0000 01123345556667778889999999988877776543 222 2232 236
Q ss_pred eeccEEEEecCCC
Q 018704 169 ISYDKLVIALGAE 181 (351)
Q Consensus 169 ~~~d~lviAtG~~ 181 (351)
..+.-=|+|-|..
T Consensus 195 ~~ApLTvVCDGcf 207 (509)
T KOG1298|consen 195 AFAPLTVVCDGCF 207 (509)
T ss_pred EecceEEEecchh
Confidence 6677789999964
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=97.71 E-value=3e-05 Score=74.23 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=31.1
Q ss_pred cEEEECCchhHHHHHHhhhccC-ceEEEEcCCCc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~ 96 (351)
||||||||.|||+||+.+++.| .+|+|||+.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCC
Confidence 7999999999999999999999 99999998754
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00043 Score=67.17 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=38.2
Q ss_pred HHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+++.||+++.+. +++++. + .+++.+|.++.+|.||.|.|.++.
T Consensus 103 e~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 103 ERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 3445556677799999994 888754 3 355567888999999999998875
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00028 Score=65.97 Aligned_cols=93 Identities=22% Similarity=0.328 Sum_probs=62.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----------CCcHHHH--------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----------SFDDRLR-------------- 287 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~----------~~~~~~~-------------- 287 (351)
.|+|||||..|+.+|..|.+. .++.+|.++++.+... ..++...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~------------~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~ 68 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA------------RPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGY 68 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc------------CCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCC
Confidence 389999999999999988753 1238899998864111 1111110
Q ss_pred --------------------HHHHHHh-hhcCcEEEcC-eEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 288 --------------------HYATTQL-SKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 --------------------~~~~~~l-~~~gV~~~~~-~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..+.+.+ ++.+..++.+ +|.+++.+++++.+|+++.+|.||.|.|..+.
T Consensus 69 ~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 69 EVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred EEECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCCC
Confidence 0111221 1113335556 58899888899999999999999999998875
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.1e-05 Score=70.07 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|||||||.+||++|..|.+.|++|+|+|+.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 46899999999999999999999999999997544
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00039 Score=65.40 Aligned_cols=90 Identities=24% Similarity=0.409 Sum_probs=63.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~------------------------------- 280 (351)
.|+|||||.+|+-+|..|++.| .+|.++++.+..+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g--------------~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPG--------------LRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEY 66 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEE
Confidence 3899999999999999988755 6677766532000
Q ss_pred --------------CC-cHHHHHHHHHHhhhcCcEEEcCeEEEEeCC-----eEEecCCcEEeccEEEEecCCCC
Q 018704 281 --------------SF-DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 281 --------------~~-~~~~~~~~~~~l~~~gV~~~~~~v~~v~~~-----~v~~~~g~~~~~D~vi~a~G~~p 335 (351)
.. ...+.+.+.+.+.+.|++++.+++..+..+ .|.+.+|.++.+|.||.|+|..+
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 67 RFPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ecCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00 022334555556677899987777777532 35667888899999999999876
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00012 Score=73.68 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=64.2
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
.++++|+|||+|++|+.+|..|.+.| .+|+++++...+ +. ++.++.....+.+++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--------------~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 390 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNG--------------VAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAM 390 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHC
Confidence 45789999999999999999999877 889999986422 21 3455555556677888
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCCC
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p 335 (351)
||+++.+..... .+.+.+ ....+|.||+|+|...
T Consensus 391 Gv~~~~~~~v~~---~i~~~~-~~~~~DavilAtGa~~ 424 (654)
T PRK12769 391 GIEFELNCEVGK---DISLES-LLEDYDAVFVGVGTYR 424 (654)
T ss_pred CeEEECCCEeCC---cCCHHH-HHhcCCEEEEeCCCCC
Confidence 999999852211 122211 1236999999999754
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00045 Score=67.72 Aligned_cols=91 Identities=25% Similarity=0.322 Sum_probs=63.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC---C---C---------------C-------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL---S---S---------------F------- 282 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l---~---~---------------~------- 282 (351)
.|+|||||+.|+++|..+++.| .+|.++++.. .+ + . +
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G--------------~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMG--------------AKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcC--------------CcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHH
Confidence 7999999999999999999877 7788887751 11 0 0 0
Q ss_pred --------------------------cH-HHHHHHHHHhhhc-CcEEEcCeEEEEe--CC---eEEecCCcEEeccEEEE
Q 018704 283 --------------------------DD-RLRHYATTQLSKS-GVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 329 (351)
Q Consensus 283 --------------------------~~-~~~~~~~~~l~~~-gV~~~~~~v~~v~--~~---~v~~~~g~~~~~D~vi~ 329 (351)
|. .....+.+.+++. |++++.++|.++. ++ +|.+.+|..+.|+.||+
T Consensus 72 ~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIl 151 (618)
T PRK05192 72 IDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVL 151 (618)
T ss_pred HhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEE
Confidence 00 0122333344443 8888877777764 22 57788999999999999
Q ss_pred ecCCCCc
Q 018704 330 STGVGPS 336 (351)
Q Consensus 330 a~G~~p~ 336 (351)
|+|...+
T Consensus 152 ATGTFL~ 158 (618)
T PRK05192 152 TTGTFLR 158 (618)
T ss_pred eeCcchh
Confidence 9996543
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=3.8e-05 Score=76.10 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=31.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+.||||||+|.|||+||..+++.|.+|+|+|+..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~ 36 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVP 36 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccC
Confidence 4699999999999999999999999999999654
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.7e-05 Score=73.68 Aligned_cols=38 Identities=18% Similarity=0.441 Sum_probs=34.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~~~ 98 (351)
..+||+|||||++||+||++|++.|. +|+|+|+++...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G 63 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG 63 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence 35799999999999999999999998 599999988753
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.7e-05 Score=74.15 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=33.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...||||||+|.|||+||..+++.|.+|+|+|+...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 458999999999999999999999999999998764
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.1e-05 Score=74.72 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=32.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...||||||+| +||+||+.+++.|.+|+|||+...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 35899999999 999999999999999999997754
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.7e-05 Score=76.30 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=34.8
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
....+|+|||||++||+||+.|.+.|++|+|+|++...
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 44689999999999999999999999999999998765
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.3e-05 Score=73.84 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=31.9
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+|+|||||++||++|+.|++.|++|+|+|+++..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~ 34 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFI 34 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 5899999999999999999999999999998764
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.3e-05 Score=74.64 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=33.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||||||+|.|||+||..+++.|.+|+|||+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45899999999999999999999999999999877
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.7e-05 Score=74.25 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=34.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+.||||||+|.|||+||+.+++.|.+|+|+|+....
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 4589999999999999999999999999999988654
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.2e-05 Score=74.63 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=32.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||||||||.|||+||..+++.|.+|+|||+..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 45799999999999999999999999999999863
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.1e-05 Score=74.90 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=32.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||||||||.|||+||..+++.|.+|+|+|+..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~ 38 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVF 38 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence 45799999999999999999999999999999764
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.9e-05 Score=73.93 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce----EEecCCcEEeccEEEEecC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK----LILNDGTEVPYGLLVWSTG 332 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~----v~~~~g~~~~~D~vi~a~G 332 (351)
..+.+.+.+++++.|++++++. |++|.. ++ +.+.+|+++++|.||+|+.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 4677888888888999999995 998863 33 6677898899999999985
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.5e-05 Score=67.55 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=33.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~ 100 (351)
.++|+|||+|++||+||+.|.++ .+||++|.+.+...+
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 47899999999999999999998 799999998876543
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.2e-05 Score=75.25 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=32.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
....||||||||.|||+||..+++.|.+|+|+|++.
T Consensus 33 ~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~ 68 (640)
T PRK07573 33 KRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD 68 (640)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence 346799999999999999999999999999999754
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=5e-05 Score=75.80 Aligned_cols=36 Identities=28% Similarity=0.231 Sum_probs=32.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||||||||.|||+||..+++.|.+|+|||+...
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 457999999999999999999999999999998643
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.2e-05 Score=77.46 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=31.9
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~ 97 (351)
++|+|||||||||++|+.|++. |++|+|+|+.+..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 4799999999999999999997 8999999988753
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.4e-05 Score=73.44 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=31.7
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...+||||||+|.|||+||+.+++ |.+|+|||+...
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~ 42 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTL 42 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCC
Confidence 445899999999999999999974 999999998754
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=6.7e-05 Score=74.52 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=32.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||||||||.|||+||+.+++.|.+|+|+|+..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 45799999999999999999999999999999764
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00061 Score=64.29 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=35.7
Q ss_pred HHHHHHhhhc-CcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~-gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+. +|+++.+ ++++++. + .+.+.+|+++.+|.||.|.|....
T Consensus 113 ~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 113 LSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 3344445444 5999999 4888864 2 355678888999999999998765
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=6.3e-05 Score=74.92 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=32.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...||||||||.|||+||+.+++.|.+|+|+|+...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 457999999999999999999999999999997654
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.1e-05 Score=70.86 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEe--CC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~--~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.++.+.+.+.++..|.+++.++ |+++. ++ +|++.+|+++.|+.||....+.|.
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 4788888888899999999995 99884 22 377889999999999999888877
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00016 Score=73.83 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=32.2
Q ss_pred hcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 227 ~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
..++|+|+|||+|+.|+.+|..|++.| .+|+++++.
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~G--------------h~Vtv~E~~ 415 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSG--------------HNVTAIDGL 415 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCC--------------CeEEEEccc
Confidence 357789999999999999999999877 899999974
|
|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=7.4e-05 Score=69.46 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=32.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~~~ 98 (351)
...+|||||||.|||+||.+|-+.|+ +++|+|..++..
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 34689999999999999999997666 599999887753
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00089 Score=59.05 Aligned_cols=91 Identities=19% Similarity=0.316 Sum_probs=65.2
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------C-------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------S------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~-----------~------------------- 281 (351)
.|+|||||++|+-+|..+++.+ .+|.++++...+. .
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G--------------~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~ 88 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNG--------------LKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYE 88 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCee
Confidence 8999999999999999998866 7888888853210 0
Q ss_pred ---------CcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C-----eEEec-----------CCcEEeccEEEEecCC
Q 018704 282 ---------FDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q-----KLILN-----------DGTEVPYGLLVWSTGV 333 (351)
Q Consensus 282 ---------~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~-----~v~~~-----------~g~~~~~D~vi~a~G~ 333 (351)
...++.+.+.+.+.+.|++++.+. +.++.. + +++++ |...++++.||.|||.
T Consensus 89 ~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 89 DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 012344555666778899999994 777642 2 44443 2246899999999998
Q ss_pred CCc
Q 018704 334 GPS 336 (351)
Q Consensus 334 ~p~ 336 (351)
...
T Consensus 169 ~a~ 171 (254)
T TIGR00292 169 DAE 171 (254)
T ss_pred Cch
Confidence 765
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00022 Score=67.90 Aligned_cols=89 Identities=12% Similarity=0.189 Sum_probs=57.5
Q ss_pred ccCeEEEECCChHHHHHHHHHHH-HHHHHHHhhhcCCCCccEEEEEeCCCCC---------CCCc--HHHHHHHHHHhhh
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEANEIL---------SSFD--DRLRHYATTQLSK 296 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~l---------~~~~--~~~~~~~~~~l~~ 296 (351)
+.++|+|||+|++|+.+|..|.. .+ .+|+++++.+.+ |... ..+.+.+.+.+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g--------------~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~ 103 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHER--------------VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLS 103 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC--------------CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhh
Confidence 34699999999999999997653 33 889999997422 1111 2344455555666
Q ss_pred cCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 297 SGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+++++.+. |- ..+.+++= .-.+|.||+|+|..+.
T Consensus 104 ~~v~f~gnv~VG----~Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 104 PNYRFFGNVHVG----VDLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred CCeEEEeeeEec----CccCHHHH-HhcCCEEEEEcCCCCC
Confidence 788887442 21 11222211 2368999999998765
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00075 Score=66.09 Aligned_cols=91 Identities=21% Similarity=0.295 Sum_probs=63.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC----CC------------------C---------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE----IL------------------S--------- 280 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~l------------------~--------- 280 (351)
.|+|||+|.+|+++|..+++.+ .+|.++++.. .+ .
T Consensus 2 DViVIGaG~AGl~aA~ala~~G--------------~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~ 67 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMG--------------AKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKA 67 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCC--------------CCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHH
Confidence 6899999999999999999876 5666666531 00 0
Q ss_pred ------------------------CCcH-HHHHHHHHHhhhc-CcEEEcCeEEEEe---CC---eEEecCCcEEeccEEE
Q 018704 281 ------------------------SFDD-RLRHYATTQLSKS-GVRLVRGIVKDVD---SQ---KLILNDGTEVPYGLLV 328 (351)
Q Consensus 281 ------------------------~~~~-~~~~~~~~~l~~~-gV~~~~~~v~~v~---~~---~v~~~~g~~~~~D~vi 328 (351)
.+|. .+...+.+.+++. ++.++.+++.++. ++ +|.+.+|..+.||.||
T Consensus 68 ~d~~~i~~r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VI 147 (617)
T TIGR00136 68 ADKAGLQFRVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVI 147 (617)
T ss_pred HHhhceeheecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEE
Confidence 0111 1123444555555 8999888776663 22 5788889899999999
Q ss_pred EecCCCCc
Q 018704 329 WSTGVGPS 336 (351)
Q Consensus 329 ~a~G~~p~ 336 (351)
+|+|...+
T Consensus 148 LATGtfL~ 155 (617)
T TIGR00136 148 ITTGTFLR 155 (617)
T ss_pred EccCcccC
Confidence 99998865
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=6.5e-05 Score=74.40 Aligned_cols=36 Identities=33% Similarity=0.348 Sum_probs=32.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccC---ceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSL---YDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g---~~v~vie~~~~ 96 (351)
...||+|||||.|||+||..+++.| .+|+|+|+...
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 4579999999999999999999998 89999997643
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=7.1e-05 Score=74.13 Aligned_cols=36 Identities=28% Similarity=0.207 Sum_probs=32.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...||||||||.|||+||..+++.|.+|+|+|+...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 357999999999999999999999999999998743
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0006 Score=66.58 Aligned_cols=90 Identities=22% Similarity=0.351 Sum_probs=60.8
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-------------------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------------------------- 279 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l------------------------------- 279 (351)
|+|+|||||.+|+-.+..|.+.| .+++++++++-+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g--------------~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG--------------LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT---------------EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSC
T ss_pred CEEEEECccHHHHHHHHHHHHCC--------------CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhc
Confidence 59999999999999999998876 899999885311
Q ss_pred -CCCc-----------HHHHHHHHHHhhhcCc--EEEcCe-EEEEeC--C-------eEEec-CCc--EEeccEEEEecC
Q 018704 280 -SSFD-----------DRLRHYATTQLSKSGV--RLVRGI-VKDVDS--Q-------KLILN-DGT--EVPYGLLVWSTG 332 (351)
Q Consensus 280 -~~~~-----------~~~~~~~~~~l~~~gV--~~~~~~-v~~v~~--~-------~v~~~-~g~--~~~~D~vi~a~G 332 (351)
+.++ .++.++++.++++.++ .+.+++ |.+++. + .|++. +|+ +..+|.||+|+|
T Consensus 68 fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 68 FSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATG 147 (531)
T ss_dssp CTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-
T ss_pred CCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCC
Confidence 0011 3567788888887776 477784 887753 1 35554 343 346899999999
Q ss_pred CC
Q 018704 333 VG 334 (351)
Q Consensus 333 ~~ 334 (351)
.-
T Consensus 148 ~~ 149 (531)
T PF00743_consen 148 HF 149 (531)
T ss_dssp SS
T ss_pred Cc
Confidence 74
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=97.55 E-value=6.3e-05 Score=74.41 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=30.4
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
||||||||.|||+||..+++.|.+|+|||+..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~ 32 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY 32 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 79999999999999999999999999999865
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.001 Score=58.80 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=64.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------C-------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------S------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~-----------~------------------- 281 (351)
.|+|||||++|+-+|..+++.+ .+|.++++...+. .
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G--------------~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAG--------------LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 8999999999999999998766 8888888753110 0
Q ss_pred ---------CcHHHHHHHHHHhhhcCcEEEcCe-EEEEe--CC----eEEec-----------CCcEEeccEEEEecCCC
Q 018704 282 ---------FDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ----KLILN-----------DGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 282 ---------~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~--~~----~v~~~-----------~g~~~~~D~vi~a~G~~ 334 (351)
-...+...+.+.+.+.|++++.+. |.++. ++ ++... +...+.++.||.|+|..
T Consensus 93 ~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 93 EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 012344556666778899999994 77764 23 22221 22468999999999976
Q ss_pred Cc
Q 018704 335 PS 336 (351)
Q Consensus 335 p~ 336 (351)
..
T Consensus 173 a~ 174 (257)
T PRK04176 173 AE 174 (257)
T ss_pred cH
Confidence 65
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=8e-05 Score=66.05 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=31.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
+++||+|||||.|||+||..|.+.|.++.||...
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 4589999999999999999999999999999855
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00071 Score=63.97 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCccccccCCCC
Q 018704 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~ 345 (351)
.+.+.+.+.+.+.|++++.+. |++++. + .+++.+|.++.+|.||.|.|.++. +.+.+|++
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~g~~ 176 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK-LRELAGIK 176 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHcCCC
Confidence 455666677777899999984 888854 3 356678888999999999998766 23334443
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=7.1e-05 Score=75.00 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=32.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...||||||||.|||.||..+++.|.+|+|+|+...
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 457999999999999999999999999999997654
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=6.9e-05 Score=74.55 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=32.1
Q ss_pred CCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~ 96 (351)
..||||||||.|||+||..+++. |.+|+|||+...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 47999999999999999999997 999999998753
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=71.99 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=34.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~ 99 (351)
+..+||||||+| +|++||..+++.|.+|+|||+.+....
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 457899999999 899999999999999999999866533
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0008 Score=63.37 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=33.0
Q ss_pred hcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..|++++.+. |++++. + .|.+++|+++++|.||.|.|..+.
T Consensus 123 ~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 123 QDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred CCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 4589999994 887753 3 466678889999999999998776
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00016 Score=68.83 Aligned_cols=89 Identities=21% Similarity=0.290 Sum_probs=66.4
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
..+++|+|||+|+.|+.+|..|++.| ..|+++++.... |. ++.++.+...+.|++.
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G--------------~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~ 186 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAG--------------HDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERS 186 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCC--------------CeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHc
Confidence 45579999999999999999999887 899999885321 22 4567788888899999
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCC
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
|++|+.+.-.+. .+.+++= .-++|.|++|+|..
T Consensus 187 Gv~~~~~~~vG~---~it~~~L-~~e~Dav~l~~G~~ 219 (457)
T COG0493 187 GVEFKLNVRVGR---DITLEEL-LKEYDAVFLATGAG 219 (457)
T ss_pred CeEEEEcceECC---cCCHHHH-HHhhCEEEEecccc
Confidence 999999853322 1333221 23469999999964
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.50 E-value=9.2e-05 Score=72.96 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=33.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.++||||||+|.+||++|..+++.|.+|+|||+....
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3589999999999999999999999999999987543
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00084 Score=63.56 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=36.9
Q ss_pred HHHHHHhhhcCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+++.|++++.+ ++.+++. + .|.+.+|+++.+|.||.|.|....
T Consensus 116 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 116 DALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 34445566678999988 4888754 3 356678888999999999998765
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00093 Score=65.07 Aligned_cols=92 Identities=23% Similarity=0.382 Sum_probs=64.3
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC------------------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL------------------------------ 279 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l------------------------------ 279 (351)
..|+|||||++|+-+|..+++.| .+|.++++.. +.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~G--------------l~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~ 174 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLG--------------LNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYL 174 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCC--------------CcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEe
Confidence 38999999999999999998755 5566655421 10
Q ss_pred ---------CC---Cc-HHHHHHHHHHhhhcCcEEEcCeEEEEeC--Ce---EEecCCcEEeccEEEEecCCCCc
Q 018704 280 ---------SS---FD-DRLRHYATTQLSKSGVRLVRGIVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 280 ---------~~---~~-~~~~~~~~~~l~~~gV~~~~~~v~~v~~--~~---v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.. ++ ..+.+.+.+.+.+.|++++..+|+++.. ++ +.+.+|.++.+|.||.|+|..+.
T Consensus 175 ~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 175 DDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG 249 (529)
T ss_pred cCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence 00 01 2233555566677799996667888853 33 35577888999999999998774
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=9.4e-05 Score=73.22 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=31.1
Q ss_pred CCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~ 96 (351)
.+||||||||.|||+||+.+++. |.+|+|+|+...
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 47999999999999999999976 589999998754
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=9.5e-05 Score=72.89 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=32.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~ 96 (351)
..+||||||||.|||+||..+++. |.+|+|+|+...
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 457999999999999999999976 789999998764
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=61.84 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhcC-cEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKSG-VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~g-V~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+++.| ++++ + +++++.. + .+.+.+|.++.+|.||.|.|....
T Consensus 113 l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 113 IERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred HHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence 3445555666666 8888 6 5887753 3 456678888999999999998765
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=97.47 E-value=9.1e-05 Score=71.99 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=33.5
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
+||+|||+||+|+.+|+.|++.|++|++||++....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 589999999999999999999999999999987754
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00013 Score=72.07 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=32.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
...||||||+|.|||+||+.+++.| +|+|+|+....
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~ 63 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH 63 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence 4579999999999999999999999 99999987653
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00055 Score=60.69 Aligned_cols=31 Identities=29% Similarity=0.271 Sum_probs=28.3
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
.|||||+|.|||+|+..+-..|-.|+++|+.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~ 41 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKA 41 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEecc
Confidence 6999999999999999999887789999944
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0012 Score=61.71 Aligned_cols=41 Identities=7% Similarity=0.269 Sum_probs=32.9
Q ss_pred hcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..|++++.+. |++++. + .+.+++|.++++|+||-|-|.+..
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 3578899884 888753 3 466789999999999999998776
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=62.37 Aligned_cols=40 Identities=15% Similarity=0.339 Sum_probs=32.2
Q ss_pred cCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 297 SGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+++++.+. |++++. + .+.+++|+++++|.||-|-|.+..
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 479999994 888764 3 366789988999999999998765
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00037 Score=69.59 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=64.2
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--CCcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (351)
.+.++|+|||+|+.|+.+|..|.+.| .+|+++++.+.. + .++.++.....+.+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G--------------~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMG--------------YEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL 346 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHC
Confidence 56789999999999999999999877 899999886422 1 12345555555678888
Q ss_pred CcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCC
Q 018704 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p 335 (351)
|++++.+. |.. .+.+++ ...++|.||+|||..+
T Consensus 347 gv~~~~~~~v~~----~~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 347 GVKIHLNTRVGK----DIPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred CcEEECCCEeCC----cCCHHH-HHhcCCEEEEEcCcCC
Confidence 99999995 421 111221 2357999999999763
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00013 Score=72.39 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=30.1
Q ss_pred cEEEECCchhHHHHHHhhh----ccCceEEEEcCCCc
Q 018704 64 RVVVLGSGWAGCRLMKGID----TSLYDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~----~~g~~v~vie~~~~ 96 (351)
||||||||.|||+||+.++ +.|.+|+|+|+...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999998653
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00016 Score=71.43 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=33.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhc-cCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie~~~~ 96 (351)
..+|+||||||.+|+.+|.+|++ .|++|+|||+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 34899999999999999999999 8999999999864
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00017 Score=63.85 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=33.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.|++|||||.+|+.+|..|++.|.+|+|||++++.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HI 36 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI 36 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccC
Confidence 68999999999999999999999999999999885
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00017 Score=71.24 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=33.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
...||+|||+|.+|+++|+.+++.|.+|+|||+....
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4689999999999999999999999999999987543
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00043 Score=70.37 Aligned_cols=94 Identities=18% Similarity=0.266 Sum_probs=70.6
Q ss_pred CCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--------CCC--CcHHHHHHHH
Q 018704 222 ISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--------LSS--FDDRLRHYAT 291 (351)
Q Consensus 222 ~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------l~~--~~~~~~~~~~ 291 (351)
+.++...++++|+|||+|++|+-+|..|.+.| ..|++.+|.+- .|. +|..+.++-.
T Consensus 1777 p~pp~~rtg~~vaiigsgpaglaaadqlnk~g--------------h~v~vyer~dr~ggll~ygipnmkldk~vv~rrv 1842 (2142)
T KOG0399|consen 1777 PCPPAFRTGKRVAIIGSGPAGLAAADQLNKAG--------------HTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRV 1842 (2142)
T ss_pred cCCcccccCcEEEEEccCchhhhHHHHHhhcC--------------cEEEEEEecCCcCceeeecCCccchhHHHHHHHH
Confidence 34567788999999999999999999999887 89999999631 122 4556666667
Q ss_pred HHhhhcCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCC
Q 018704 292 TQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 292 ~~l~~~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
+.|.+.||+++++. |-. .+. -|+-.-+.|.||+|+|..
T Consensus 1843 ~ll~~egi~f~tn~eigk----~vs-~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1843 DLLEQEGIRFVTNTEIGK----HVS-LDELKKENDAIVLATGST 1881 (2142)
T ss_pred HHHHhhCceEEeeccccc----ccc-HHHHhhccCeEEEEeCCC
Confidence 78899999999884 421 122 234445689999999965
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00016 Score=70.44 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=30.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..||||||+|.|||+||..+++ |.+|+|+|+.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 4799999999999999999987 899999997754
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00015 Score=71.45 Aligned_cols=34 Identities=32% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||||||+|.|||+||..+ +.|.+|+|+|+..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~ 39 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGL 39 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccC
Confidence 347999999999999999999 8999999999864
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0015 Score=63.84 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhcCcEEEcC-eEEEEeC--Ce--EEe---cCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LIL---NDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~--v~~---~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.+.|++++.+ ++++++. ++ +.+ .+++++.+|.||.|.|.+..
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 3455667777789999999 4888864 33 344 45667999999999998765
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00021 Score=68.50 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=34.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
...||+|||||..|+.+|..++.+|++|+|+|+++.-
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~A 47 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLA 47 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCccc
Confidence 5689999999999999999999999999999987654
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0017 Score=61.96 Aligned_cols=57 Identities=21% Similarity=0.398 Sum_probs=39.3
Q ss_pred HHHHHHHhhhcCcEEEcC-eEEEEe--CCeE--EecCCcEEeccEEEEecCCCCccccccCCC
Q 018704 287 RHYATTQLSKSGVRLVRG-IVKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 287 ~~~~~~~l~~~gV~~~~~-~v~~v~--~~~v--~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
.+.+.+.+++.|++++.+ +|+++. ++.+ ...+|.++.||.||.|+|.... +.+.+|+
T Consensus 111 D~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s~-l~~~lgl 172 (428)
T PRK10157 111 DAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSI-LAEKLGM 172 (428)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCHH-HHHHcCC
Confidence 345666677789999999 488764 3333 3356778999999999997543 3344444
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00039 Score=67.39 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+|+|||+|.+|+++|..|++.|++|+++|..+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3689999999999999999999999999999754
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0021 Score=61.06 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=33.6
Q ss_pred HHHHHHHhhh-cCcEEEcC-eEEEEeC--C--eEEecC-C--cEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSK-SGVRLVRG-IVKDVDS--Q--KLILND-G--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~-~gV~~~~~-~v~~v~~--~--~v~~~~-g--~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+ .+|+++.+ ++++++. + .+.+.+ + .++++|+||.|.|....
T Consensus 124 ~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 124 LEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence 3344444444 37999988 4888754 3 355543 2 36999999999998765
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00017 Score=71.51 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=31.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~ 96 (351)
...||||||||.|||+||+.+++. |.+|+|+|+...
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~ 40 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYP 40 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 347999999999999999999976 579999997643
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00019 Score=65.91 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=32.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCce--EEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~--v~vie~~~~~ 97 (351)
..++|+|+|||.+||++|++|++++.+ ++|+|.+++.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 457999999999999999999998776 5669998875
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0023 Score=59.96 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=36.6
Q ss_pred HHHHHHHhhhcC-cEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSKSG-VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~~g-V~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+.| ++++.+ +|++++. + .+.+++|+++.+|.||.|.|....
T Consensus 109 ~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 109 QQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 344445555666 899988 4888753 3 356678888999999999997655
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0016 Score=60.02 Aligned_cols=52 Identities=19% Similarity=0.352 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEec---CCc--EEeccEEEEecCCCCc
Q 018704 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILN---DGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~---~g~--~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+++.|++++.+. +.+++. ++ +.+. +|+ ++++|+||-|-|....
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 345566667777889999994 776643 33 2332 343 6899999999998875
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0016 Score=63.31 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhcCcEEEcC-eEEEEeC--CeE--Eec--CC-cEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--QKL--ILN--DG-TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~v--~~~--~g-~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+++.|++++.+ ++++++. +++ .+. +| .++++|.||-|.|.++.
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 3455556677789999999 4888753 333 343 45 46999999999998875
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0021 Score=60.52 Aligned_cols=91 Identities=27% Similarity=0.400 Sum_probs=67.0
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC--CCCCC-----Cc---------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSS-----FD--------------------- 283 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~l~~-----~~--------------------- 283 (351)
+|+|||||++|+-+|..|.+.| .+|+++++. +..+. +.
T Consensus 4 dV~IvGaG~aGl~lA~~L~~~G--------------~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~ 69 (387)
T COG0654 4 DVAIVGAGPAGLALALALARAG--------------LDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGV 69 (387)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccC
Confidence 7999999999999999999876 778887775 11100 00
Q ss_pred ----------------------------------HHHHHHHHHHhhhcC-cEEEcC-eEEEEeCC----eEEec-CCcEE
Q 018704 284 ----------------------------------DRLRHYATTQLSKSG-VRLVRG-IVKDVDSQ----KLILN-DGTEV 322 (351)
Q Consensus 284 ----------------------------------~~~~~~~~~~l~~~g-V~~~~~-~v~~v~~~----~v~~~-~g~~~ 322 (351)
..+.+.+.+.+.+.+ |+++.+ +|+.++.+ .++++ ||+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~ 149 (387)
T COG0654 70 PPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETL 149 (387)
T ss_pred CceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEE
Confidence 123344555555554 899998 48888753 37777 99999
Q ss_pred eccEEEEecCCCCc
Q 018704 323 PYGLLVWSTGVGPS 336 (351)
Q Consensus 323 ~~D~vi~a~G~~p~ 336 (351)
.||+||-|=|....
T Consensus 150 ~a~llVgADG~~S~ 163 (387)
T COG0654 150 DADLLVGADGANSA 163 (387)
T ss_pred ecCEEEECCCCchH
Confidence 99999999997665
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0024 Score=60.10 Aligned_cols=51 Identities=25% Similarity=0.370 Sum_probs=37.8
Q ss_pred HHHHHHHHhh-hcCcEEEcCe-EEEEeC--C----eEEecCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLS-KSGVRLVRGI-VKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~-~~gV~~~~~~-v~~v~~--~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+. ..|++++.+. +++++. + .|.+.+|+++.+|.||-|.|....
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 3444555554 3579999994 888754 2 467788999999999999998875
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0003 Score=71.43 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=34.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
...+|+|||||++||++|..|++.|++|+|+|++++..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG 220 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG 220 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence 45899999999999999999999999999999987653
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00022 Score=70.57 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=31.0
Q ss_pred CCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~ 96 (351)
..||+|||||.|||+||..+++. |.+|+|+|+...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 47999999999999999999976 689999997644
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00025 Score=70.38 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=30.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..||||||||.|||+||+.+++. .+|+|+|+..
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~ 37 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLY 37 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCC
Confidence 47999999999999999999976 8999999764
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0029 Score=59.62 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhc-CcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~-gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+++. |++++.+ +++++.. + .|.+.+|.++.+|.||.|.|....
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 334455555555 8999988 4888753 3 356678888999999999998775
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00027 Score=69.41 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=31.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...||||||+|.|||+||..+++. .+|+|+|+...
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~ 41 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPL 41 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCC
Confidence 457999999999999999999886 89999997653
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0027 Score=59.31 Aligned_cols=39 Identities=15% Similarity=0.372 Sum_probs=29.9
Q ss_pred CcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+++++. |++++. + .+++++|+++++|+||-|-|.+..
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 35677784 888754 2 466788989999999999997765
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00078 Score=66.68 Aligned_cols=89 Identities=21% Similarity=0.318 Sum_probs=62.2
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--CCcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (351)
..+++|+|||+|++|+-+|..|.+.| .+|+++++.+.+ + .++.+....-.+.+++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~ 200 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMG--------------HAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDL 200 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence 56789999999999999999998877 789999975322 1 12344445445567788
Q ss_pred CcEEEcCe-E-EEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-V-KDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v-~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
|++++.+. + .++..+. ....+|.||+|+|..+.
T Consensus 201 Gv~~~~~~~~~~~~~~~~------~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 201 GVEVRLGVRVGEDITLEQ------LEGEFDAVFVAIGAQLG 235 (564)
T ss_pred CCEEEeCCEECCcCCHHH------HHhhCCEEEEeeCCCCC
Confidence 99998884 4 3321111 11248999999998754
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00031 Score=75.01 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=34.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+.||||||+|.|||+||..+++.|.+|+|+|+.+..
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 44689999999999999999999999999999987654
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0026 Score=51.71 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=26.8
Q ss_pred cEEEcCeEEEEeC--C--eEEecCCcEEeccEEEEecCC
Q 018704 299 VRLVRGIVKDVDS--Q--KLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 299 V~~~~~~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~ 333 (351)
|+++..+|+++.. + .+.+.+|..+.+|.||+|+|.
T Consensus 117 v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 117 VRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred EEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 4444456877764 2 477789999999999999996
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.002 Score=60.35 Aligned_cols=92 Identities=20% Similarity=0.390 Sum_probs=63.3
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--C----------CCc-----------------
Q 018704 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--S----------SFD----------------- 283 (351)
Q Consensus 233 v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--~----------~~~----------------- 283 (351)
|+|||||++|+-+|..|.+. +.+.+|.++++.... + ..+
T Consensus 2 viIvGaGpAGlslA~~l~~~------------~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA------------RPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc------------CCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEe
Confidence 89999999999999999321 123788888764211 0 000
Q ss_pred -----------------HHHHHHHHHHhhhcCcEEEcCeEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 284 -----------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 284 -----------------~~~~~~~~~~l~~~gV~~~~~~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..+.+.+.+.+.+.++.++...|.+++.+ .+++++|+++.++.||-|.|..+.
T Consensus 70 ~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 70 PDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred CCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 12334445555555776666678888764 457889999999999999996544
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0029 Score=59.50 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=32.4
Q ss_pred cCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 297 SGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+++++.+. +++++. + .+.+++|.++++|+||.|.|..+.
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred CCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 368888884 888753 3 567788999999999999998776
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00043 Score=68.64 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=33.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+.++||+|||+|.+|+++|..+++.|.+|+|||+....
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34679999999999999999999999999999987543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00026 Score=73.68 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=32.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||||||||.|||+||..+++.|.+|+|+|+...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457999999999999999999999999999998753
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0027 Score=61.59 Aligned_cols=51 Identities=14% Similarity=0.274 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhcCcEEEcC-eEEEEeC--Ce--EEecCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~--v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+...+.+.+++.|++++.+ +|++++. ++ +.+.+|+++.|+.||.|.|.+..
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSF 166 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHH
Confidence 3344556677889999999 4888853 33 45567888999999999998654
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00053 Score=64.61 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=28.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
+|+|||||.+|+++|..|++.| .+|++++++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G--------------~~V~LiE~r 32 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAG--------------VPVILYEMR 32 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecc
Confidence 7999999999999999999877 899999875
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00023 Score=70.71 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=29.7
Q ss_pred EEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 65 VVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 65 VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
|||||+|.|||+||..+++.|.+|+|+|+..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999999999999876
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00056 Score=72.27 Aligned_cols=37 Identities=19% Similarity=0.489 Sum_probs=33.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..++|+|||||++|+++|+.|++.|++|+|||+.+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 4589999999999999999999999999999987664
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00016 Score=60.11 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=30.8
Q ss_pred CCcEEEECCchhHHHHHHhhhc--cCceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~~~~ 97 (351)
..||+|||+|.+||++|+.+++ ..++|.|||..-..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 4699999999999999999974 67899999976443
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00036 Score=68.29 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++||||||||.|||.||..++..|.+|+|+|+...
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 458999999999999999999999999999996543
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0043 Score=58.65 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=35.7
Q ss_pred HHHHHHhhhc-CcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKS-GVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~-gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+. ||+++.+. +.+++. + .+.+.+|+++.+|+||-|-|....
T Consensus 115 ~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 115 YALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 3444445553 78999884 887753 3 456678989999999999998765
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0045 Score=58.64 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=33.9
Q ss_pred HHHhhh-cCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 291 TTQLSK-SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 291 ~~~l~~-~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+ .||+++.+ +|++++. + .|.+.+|+++.+|+||-|.|....
T Consensus 118 ~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 118 LEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 333433 47889888 4887743 2 567788999999999999997654
|
|
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00058 Score=60.86 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=32.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...||+|||+|.|||.||.+|+..|.+|+|+|.+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 35799999999999999999999999999999654
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00048 Score=67.25 Aligned_cols=35 Identities=29% Similarity=0.291 Sum_probs=30.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
....||||||+|.|||+||..++ +.+|+|+|+...
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 34589999999999999999997 569999998765
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0044 Score=52.25 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=66.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHH-hhh--cCCCCccEEEEEeCCCCCCCC-----cHHHHHHHHHHhhhcCcEEEc
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVR-QRY--SHVKDYIHVTLIEANEILSSF-----DDRLRHYATTQLSKSGVRLVR 303 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~-~~~--~~~~~~~~v~~~~~~~~l~~~-----~~~~~~~~~~~l~~~gV~~~~ 303 (351)
+|+|||+|+.|...|..+++.--+.+. +-+ ....++-+++--..-+-.|+| .+++.+.+.++..+.|.++++
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~t 89 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEIIT 89 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceeee
Confidence 899999999999999888763200000 000 001112222211111112333 368889999999999999999
Q ss_pred CeEEEEeCC---eEEecCCcEEeccEEEEecCCCCc
Q 018704 304 GIVKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 304 ~~v~~v~~~---~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+|.+++.. -..+.|.+.+.+|.||+|||....
T Consensus 90 EtVskv~~sskpF~l~td~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 90 ETVSKVDLSSKPFKLWTDARPVTADAVILATGASAK 125 (322)
T ss_pred eehhhccccCCCeEEEecCCceeeeeEEEeccccee
Confidence 888777653 123346677999999999998766
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00063 Score=67.26 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=31.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|+||||||.||+.+|.+|++ +.+|+|||+.+.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 45999999999999999999999 689999999864
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0065 Score=59.30 Aligned_cols=41 Identities=22% Similarity=0.176 Sum_probs=28.5
Q ss_pred hcC--cEEEcC-eEEEEeC--Ce--EEecC-CcEEeccEEEEecCCCCc
Q 018704 296 KSG--VRLVRG-IVKDVDS--QK--LILND-GTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~g--V~~~~~-~v~~v~~--~~--v~~~~-g~~~~~D~vi~a~G~~p~ 336 (351)
+.| ++++.+ +|++++. ++ +.+.+ |..+.+|.||+|+|..+.
T Consensus 119 ~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p 167 (534)
T PRK09897 119 QQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWP 167 (534)
T ss_pred HcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCC
Confidence 445 677777 5888854 33 34444 467899999999997543
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0073 Score=57.82 Aligned_cols=91 Identities=21% Similarity=0.338 Sum_probs=61.1
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCC-CC----------------------CC--C--
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANE-IL----------------------SS--F-- 282 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-~l----------------------~~--~-- 282 (351)
.+|+|||||.+|+-+|..|.+.+ .. +.+++++. +- +. +
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g--------------~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~ 74 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAG--------------VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRW 74 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCC
Confidence 38999999999999999999887 44 77777752 10 00 1
Q ss_pred ----c--HHHHHHHHHHhhhcCcEEEcC-----eEEEEeCC----eEEecCCcE--EeccEEEEecCCCC
Q 018704 283 ----D--DRLRHYATTQLSKSGVRLVRG-----IVKDVDSQ----KLILNDGTE--VPYGLLVWSTGVGP 335 (351)
Q Consensus 283 ----~--~~~~~~~~~~l~~~gV~~~~~-----~v~~v~~~----~v~~~~g~~--~~~D~vi~a~G~~p 335 (351)
+ ..+..++.+++++.++..... ++...+.+ .|++++|.+ +.+|.||+|||+-.
T Consensus 75 ~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~ 144 (443)
T COG2072 75 DEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLS 144 (443)
T ss_pred cccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCC
Confidence 1 125677777777776654432 23333332 577777765 45999999999743
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0044 Score=65.33 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=63.6
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------CCc-HHHHHHHHHHhhhc
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------SFD-DRLRHYATTQLSKS 297 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~-----------~~~-~~~~~~~~~~l~~~ 297 (351)
.++|+|||||+.|+..|..+.+.+ .+|++++....+. ..+ .+....+.+.+...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G--------------~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 228 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAG--------------ARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAM 228 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcC
Confidence 358999999999999999998876 8999999853211 111 23334455555555
Q ss_pred -CcEEEcCe-EEEEeCCe-EEe----c-------CC------cEEeccEEEEecCCCCc
Q 018704 298 -GVRLVRGI-VKDVDSQK-LIL----N-------DG------TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 -gV~~~~~~-v~~v~~~~-v~~----~-------~g------~~~~~D~vi~a~G~~p~ 336 (351)
+|+++.++ |..+.... +.. . ++ .++.+|.||+|||..+.
T Consensus 229 ~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r 287 (985)
T TIGR01372 229 PEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER 287 (985)
T ss_pred CCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc
Confidence 59999884 77765421 110 0 11 15889999999998876
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0013 Score=60.62 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=28.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~ 97 (351)
...++|+|||||.++..++..|.+.+ .+|+++-+...+
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 34579999999999999999998865 489999877544
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.008 Score=56.35 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=38.3
Q ss_pred HHHHHHHHhhh-cCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSK-SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~-~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.+ .|++++.+ +|++++. + .+.+++|.++.+|.||.|.|....
T Consensus 107 l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 107 LGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChH
Confidence 44555566666 49999988 4888853 3 366678888999999999997754
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00072 Score=66.35 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=33.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..++|+||||+|.+|..+|.+|++.|++|+|+|....
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 4568999999999999999999999999999998754
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.006 Score=57.68 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=34.7
Q ss_pred HHHHHHHHhhh-cCcEEEcCe-EEEEeC--Ce--EEe---cCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSK-SGVRLVRGI-VKDVDS--QK--LIL---NDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~-~gV~~~~~~-v~~v~~--~~--v~~---~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.+ .+++++.+. |++++. ++ +++ .+++++++|+||-|-|....
T Consensus 109 l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 109 LQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 34445555544 479999994 888854 33 334 33457999999999998765
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.009 Score=50.42 Aligned_cols=91 Identities=21% Similarity=0.357 Sum_probs=61.0
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------CCC--Cc--------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------LSS--FD-------------------- 283 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------l~~--~~-------------------- 283 (351)
.|+|||+|++|+-+|.+|++.+ .+|.+++|+-. +.+ |+
T Consensus 32 DViIVGaGPsGLtAAyyLAk~g--------------~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKAG--------------LKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred cEEEECcCcchHHHHHHHHhCC--------------ceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcce
Confidence 8999999999999999999876 99999999621 111 11
Q ss_pred -----------HHHHHHHHHHhhhcCcEEEcCe-EEEEe--CC----eEEec-----------CCcEEeccEEEEecCCC
Q 018704 284 -----------DRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ----KLILN-----------DGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 284 -----------~~~~~~~~~~l~~~gV~~~~~~-v~~v~--~~----~v~~~-----------~g~~~~~D~vi~a~G~~ 334 (351)
.++...+....-+.|.++..+. |.++. ++ +++++ |--.++++.||=|||+.
T Consensus 98 ~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 98 EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 1112222223335578888773 66652 22 33332 33468899999999998
Q ss_pred Cc
Q 018704 335 PS 336 (351)
Q Consensus 335 p~ 336 (351)
..
T Consensus 178 a~ 179 (262)
T COG1635 178 AE 179 (262)
T ss_pred hH
Confidence 77
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0059 Score=57.39 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=33.2
Q ss_pred HHHHHHHhhhc-CcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~~-gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+. ++. +.+ +|.+++. + .+.+++|+++.+|.||.|.|....
T Consensus 114 ~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 114 NRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred HHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence 34444455554 455 556 4777743 3 356678888999999999998765
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00059 Score=67.06 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=30.7
Q ss_pred cEEEECCchhHHHHHHhhhccC-ceEEEEcCCCc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~ 96 (351)
|+||||||.||+.+|.+|++.+ ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999988 79999999864
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0065 Score=58.02 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhcCcEEEcC-eEEEEeC--CeEE--ecCCcEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--QKLI--LNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~v~--~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+++.|++++.+ +|+++.. +++. ..++.++.||.||.|.|....
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s~ 165 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSM 165 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcchh
Confidence 3345666777889999999 4877643 3433 234567999999999997543
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0012 Score=62.70 Aligned_cols=91 Identities=23% Similarity=0.352 Sum_probs=61.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-C---CC---CC---------------Cc------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E---IL---SS---------------FD------ 283 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~---~l---~~---------------~~------ 283 (351)
.|+|||||..|+|.|...+++| .++.++.-+ + .+ |. ++
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG--------------~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~ 71 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMG--------------AKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKA 71 (621)
T ss_pred ceEEECCCccchHHHHhhhccC--------------CeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHh
Confidence 7999999999999999999987 666666543 1 11 10 01
Q ss_pred ---------------------------HH-HHHHHHHHhh-hcCcEEEcCeEEEEeC------CeEEecCCcEEeccEEE
Q 018704 284 ---------------------------DR-LRHYATTQLS-KSGVRLVRGIVKDVDS------QKLILNDGTEVPYGLLV 328 (351)
Q Consensus 284 ---------------------------~~-~~~~~~~~l~-~~gV~~~~~~v~~v~~------~~v~~~~g~~~~~D~vi 328 (351)
.. ....+++.++ ..++.++.++|.++.. .+|++.+|..+.|+.||
T Consensus 72 ~D~~~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVV 151 (621)
T COG0445 72 ADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVV 151 (621)
T ss_pred hhhcCCchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEE
Confidence 01 1122333333 3478888886665432 37889999999999999
Q ss_pred EecCCCCc
Q 018704 329 WSTGVGPS 336 (351)
Q Consensus 329 ~a~G~~p~ 336 (351)
++||.--.
T Consensus 152 lTTGTFL~ 159 (621)
T COG0445 152 LTTGTFLR 159 (621)
T ss_pred Eeeccccc
Confidence 99996444
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0043 Score=56.92 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=31.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||+|+.||..|.-|++.|++|+++|-++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4799999999999999999999999999997653
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0091 Score=56.21 Aligned_cols=46 Identities=30% Similarity=0.387 Sum_probs=33.5
Q ss_pred HHHhhh-cCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 291 TTQLSK-SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 291 ~~~l~~-~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+ .|++++.+ +++++.. + .+.+.+|..+.+|.||.|.|.+..
T Consensus 119 ~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 119 FALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred HHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 333433 47888888 4877753 3 356678888999999999998765
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0089 Score=56.28 Aligned_cols=49 Identities=18% Similarity=0.415 Sum_probs=33.7
Q ss_pred HHHHHHhhhcCcEEEcCeEEEEeC--C--eEEecC------C--cEEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKSGVRLVRGIVKDVDS--Q--KLILND------G--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~gV~~~~~~v~~v~~--~--~v~~~~------g--~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.|++++.++++++.. + .+.+.+ | .++.+|.||-|.|....
T Consensus 96 ~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 96 SYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred HHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 445556667799998777777643 2 344442 2 36899999999997654
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0097 Score=56.35 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=34.6
Q ss_pred HHHHHHHHhhh-cCcEEEcC-eEEEEeC--Ce---EEe--cCCc-EEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSK-SGVRLVRG-IVKDVDS--QK---LIL--NDGT-EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~-~gV~~~~~-~v~~v~~--~~---v~~--~~g~-~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.+ .|++++.+ ++.++.. +. +.+ .+|+ ++.+|.||.|.|....
T Consensus 110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR 170 (407)
T ss_pred HHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH
Confidence 34455555554 48999988 4887743 32 333 3564 6999999999998764
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0047 Score=57.03 Aligned_cols=96 Identities=21% Similarity=0.304 Sum_probs=64.5
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC------CCCCC------cHHHHHHHHHHhh
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE------ILSSF------DDRLRHYATTQLS 295 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~l~~~------~~~~~~~~~~~l~ 295 (351)
.+.|+|+|+|+|-.|+-++..|.... .+|+++.++. ++|.. -..+.+-+.....
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~--------------YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r 118 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSL--------------YDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIAR 118 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccc--------------cceEEeccccceEEeeccCCccccceeehhhhhhHHHHhh
Confidence 34469999999999999988776543 7899998874 23221 2345555544444
Q ss_pred hc--CcEEEcCeEEEEeC--CeEEe----cCC----cEEeccEEEEecCCCCcc
Q 018704 296 KS--GVRLVRGIVKDVDS--QKLIL----NDG----TEVPYGLLVWSTGVGPST 337 (351)
Q Consensus 296 ~~--gV~~~~~~v~~v~~--~~v~~----~~g----~~~~~D~vi~a~G~~p~~ 337 (351)
.. +++++..+-..++. ..|.. +++ -.+.+|.+|+|+|..++.
T Consensus 119 ~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T 172 (491)
T KOG2495|consen 119 KKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT 172 (491)
T ss_pred ccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence 33 67787776555544 33333 344 358899999999999983
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0079 Score=57.21 Aligned_cols=92 Identities=24% Similarity=0.285 Sum_probs=61.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC-----C------------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-----S------------------------ 280 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l-----~------------------------ 280 (351)
++|+|||+|++|+-.|..|.+.| .++++++|.+ +. .
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g--------------~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~ 72 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREG--------------HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMG 72 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCC--------------CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhc
Confidence 59999999999999999998865 7788877742 10 0
Q ss_pred --CC----------c--HHHHHHHHHHhhhcCcE--EEcC-eEEEEeC-----CeEEecCC----cEEeccEEEEecCCC
Q 018704 281 --SF----------D--DRLRHYATTQLSKSGVR--LVRG-IVKDVDS-----QKLILNDG----TEVPYGLLVWSTGVG 334 (351)
Q Consensus 281 --~~----------~--~~~~~~~~~~l~~~gV~--~~~~-~v~~v~~-----~~v~~~~g----~~~~~D~vi~a~G~~ 334 (351)
.+ + .++.++++.++++-++. +..+ +|..++. -.|.+.++ ++.-+|.|++|+|.-
T Consensus 73 ~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 73 YSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred CCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 00 0 14566777777777753 3344 2444432 25666543 345699999999976
Q ss_pred --Cc
Q 018704 335 --PS 336 (351)
Q Consensus 335 --p~ 336 (351)
|+
T Consensus 153 ~~P~ 156 (448)
T KOG1399|consen 153 VEPR 156 (448)
T ss_pred CCCC
Confidence 55
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.011 Score=55.85 Aligned_cols=48 Identities=17% Similarity=0.396 Sum_probs=32.5
Q ss_pred HHHHHhhhcCcEEEcCeEEEEeC-----C--eEEe--cC-----C--cEEeccEEEEecCCCCc
Q 018704 289 YATTQLSKSGVRLVRGIVKDVDS-----Q--KLIL--ND-----G--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 289 ~~~~~l~~~gV~~~~~~v~~v~~-----~--~v~~--~~-----g--~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.|++++.+++.++.. + +|.+ .+ | .++++|.||-|.|..+.
T Consensus 98 ~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~ 161 (398)
T TIGR02028 98 FLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSR 161 (398)
T ss_pred HHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchH
Confidence 45555677899999887665531 1 3433 11 3 36899999999997665
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.01 Score=58.38 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=35.8
Q ss_pred HHHHHHHHhhh-cCcEEEcC-eEEEEeC--Ce--EEec--CC--cEEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSK-SGVRLVRG-IVKDVDS--QK--LILN--DG--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~-~gV~~~~~-~v~~v~~--~~--v~~~--~g--~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.+ .|++++.+ ++++++. ++ +.++ +| .++.+|.||-|.|....
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 33445555555 48999999 5888864 33 4444 56 46899999999998765
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.011 Score=55.42 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=33.4
Q ss_pred HHHHHHHhhhc-CcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~~-gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+. +++++.+ +++++.. + .+.+.++ ++.+|+||-|-|....
T Consensus 107 ~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 107 KKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 34444444454 4888888 4777643 2 4566665 8999999999998766
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0098 Score=56.51 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=28.9
Q ss_pred cEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 299 VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 299 V~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.++.+ +|++++. + .+.+++|.++++|.||.|.|.+..
T Consensus 118 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 118 GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 456667 4777753 2 466788989999999999997765
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0048 Score=57.70 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=29.4
Q ss_pred CcEEEcCeEEEEe---C-------CeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGIVKDVD---S-------QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~---~-------~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+..+..+.|.++. + .+|++.||..+.++.||+.||.--.
T Consensus 139 nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL~ 187 (679)
T KOG2311|consen 139 NLEIREGAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFLR 187 (679)
T ss_pred cchhhhhhhhheeeccCCCCceEEEEEEEecCcEeccceEEEeecccee
Confidence 5667777665542 1 3789999999999999999995433
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.017 Score=55.30 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=36.3
Q ss_pred HHHHHHhhhc---CcEEEcC-eEEEEe---------CC--eEEecCCcEEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKS---GVRLVRG-IVKDVD---------SQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~---gV~~~~~-~v~~v~---------~~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+. +++++.+ ++.+++ .+ .+.+.+|+++.+|+||-|-|....
T Consensus 121 ~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 121 NSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 3344455554 4999999 488874 12 566788999999999999998766
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.01 Score=58.58 Aligned_cols=94 Identities=23% Similarity=0.374 Sum_probs=67.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-------CCC-CCc-----HHHHHHHHHHhhhcC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-------ILS-SFD-----DRLRHYATTQLSKSG 298 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~l~-~~~-----~~~~~~~~~~l~~~g 298 (351)
+++|||.|..|.-+..++.+.. +.-.++|++-..+ .++ .+. .++...-.+-.+++|
T Consensus 5 klvvvGnGmag~r~iEell~~~-----------~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~ 73 (793)
T COG1251 5 KLVIIGNGMAGHRTIEELLESA-----------PDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENG 73 (793)
T ss_pred eEEEEecccchhhHHHHHHhcC-----------cccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcC
Confidence 8999999999999998887743 2336778775431 111 111 122222234467889
Q ss_pred cEEEcCe-EEEEeCC--eEEecCCcEEeccEEEEecCCCCc
Q 018704 299 VRLVRGI-VKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 299 V~~~~~~-v~~v~~~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
|+++.++ +..++.+ .|+.++|.++.+|-+|+|||..|.
T Consensus 74 i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 74 ITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred cEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCcccc
Confidence 9999996 9888763 677788999999999999998887
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.015 Score=54.96 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhcCcEEEcC-eEEEEeC--Ce--EEecCC---cEEeccEEEEecCCC
Q 018704 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDG---TEVPYGLLVWSTGVG 334 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~--v~~~~g---~~~~~D~vi~a~G~~ 334 (351)
.+.+.+.+.+.+.|++++.+ ++.+++. ++ +.+.+| +++.+|+||-|-|..
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCC
Confidence 45566777778889999999 4877754 34 444543 579999999999954
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=54.88 Aligned_cols=99 Identities=23% Similarity=0.402 Sum_probs=65.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-----C--------------CCc---------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-----S--------------SFD--------- 283 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l-----~--------------~~~--------- 283 (351)
.|+|||+|++|.-+|..|++.| .+|.++++.... . ...
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G--------------~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~ 70 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAG--------------LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTG 70 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcC--------------CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeee
Confidence 7999999999999999999876 677777764210 0 000
Q ss_pred ------------------------HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeE---EecCCcEEeccEEEEecCC
Q 018704 284 ------------------------DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKL---ILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 284 ------------------------~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v---~~~~g~~~~~D~vi~a~G~ 333 (351)
..+-+++.+..++.|++++.+. ++.+.. +++ +..++.++.++.||.|.|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 71 ARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred eEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCc
Confidence 1223445566677889999884 776652 222 2233468999999999996
Q ss_pred CCccccccCCCC
Q 018704 334 GPSTLVKSLDLP 345 (351)
Q Consensus 334 ~p~~~~~~~gl~ 345 (351)
... +.+.+|+.
T Consensus 151 ~s~-l~~~lg~~ 161 (396)
T COG0644 151 NSA-LARKLGLK 161 (396)
T ss_pred chH-HHHHhCCC
Confidence 554 33344443
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.011 Score=55.69 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=29.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhc--cCceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~ 94 (351)
..+|||+||||+.|.+.+..|++ ...+|.|+|+-
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl 37 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERL 37 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 35899999999999999999998 56789999943
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.02 Score=54.97 Aligned_cols=49 Identities=12% Similarity=0.333 Sum_probs=32.9
Q ss_pred HHHHHHhhhcCcEEEcCeEEEEeC-----C--eEEecC-------C--cEEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKSGVRLVRGIVKDVDS-----Q--KLILND-------G--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~gV~~~~~~v~~v~~-----~--~v~~~~-------g--~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.|++++.+.+++++. + .+.+.+ | .++++|.||-|.|....
T Consensus 136 ~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~ 200 (450)
T PLN00093 136 SFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSR 200 (450)
T ss_pred HHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchH
Confidence 345555667799998877666641 2 244432 3 47999999999997654
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.017 Score=57.12 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=35.1
Q ss_pred HHHHHHHHhhhc-CcEEEcCe-EEEEeC--CeE--Ee--cCCc-EEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKS-GVRLVRGI-VKDVDS--QKL--IL--NDGT-EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~-gV~~~~~~-v~~v~~--~~v--~~--~~g~-~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.+. +++++.+. +++++. +++ .+ .+|. ++.+|.||.|.|....
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence 334455555554 79999994 888864 333 33 3454 6899999999998776
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.003 Score=53.75 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=47.7
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEE
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 308 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~ 308 (351)
.+++|+|||||.+|..-+..|.+.| .+|+++.+. +.++ +.+..++.+|+++.+....
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~g--------------a~VtVvsp~-----~~~~----l~~l~~~~~i~~~~~~~~~ 64 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAG--------------AQLRVIAEE-----LESE----LTLLAEQGGITWLARCFDA 64 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC--------------CEEEEEcCC-----CCHH----HHHHHHcCCEEEEeCCCCH
Confidence 3469999999999999999999877 899999753 1223 2333344456665543210
Q ss_pred EeCCeEEecCCcEEeccEEEEecCCC
Q 018704 309 VDSQKLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 309 v~~~~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
+.--.+|.||.|||-.
T Consensus 65 ----------~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 65 ----------DILEGAFLVIAATDDE 80 (205)
T ss_pred ----------HHhCCcEEEEECCCCH
Confidence 1111377888888775
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.026 Score=53.19 Aligned_cols=49 Identities=8% Similarity=0.042 Sum_probs=34.9
Q ss_pred HHHHHHhhhcCcEEEcCe-EEEEeC---C--eEEe-cCCc--EEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKSGVRLVRGI-VKDVDS---Q--KLIL-NDGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~gV~~~~~~-v~~v~~---~--~v~~-~~g~--~~~~D~vi~a~G~~p~ 336 (351)
+.+.+...+.|++++.+. +++++. + .|.+ .+|+ ++.+|+||-|-|....
T Consensus 107 ~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 107 RDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 344444566789999994 777753 2 4566 4664 5899999999998765
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.025 Score=51.89 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=26.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.|+|||+|.+|+-+|..|++. ++.+|+++++.
T Consensus 94 DVlIVGaG~AGl~AA~~La~~-------------~g~kV~viEk~ 125 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKN-------------PNVKVAIIEQS 125 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHc-------------CCCeEEEEecC
Confidence 899999999999999999853 12788888885
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0032 Score=47.27 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=31.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+..+|+|||||..|..-+..|.+.|.+|+|+.++.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 35799999999999999999999999999999854
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.04 Score=46.69 Aligned_cols=91 Identities=20% Similarity=0.314 Sum_probs=55.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC------CC--Cc--------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------SS--FD-------------------- 283 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l------~~--~~-------------------- 283 (351)
.|+|||+|++|+-+|..|++.+ .+|.+++++... .. |+
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g--------------~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~ 84 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAG--------------LKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE 84 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHT--------------S-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E
T ss_pred CEEEECCChhHHHHHHHHHHCC--------------CeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE
Confidence 8999999999999999999887 999999986311 10 10
Q ss_pred -----------HHHHHHHHHHhhhcCcEEEcCe-EEEEe--C-C---eEEec-----------CCcEEeccEEEEecCCC
Q 018704 284 -----------DRLRHYATTQLSKSGVRLVRGI-VKDVD--S-Q---KLILN-----------DGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 284 -----------~~~~~~~~~~l~~~gV~~~~~~-v~~v~--~-~---~v~~~-----------~g~~~~~D~vi~a~G~~ 334 (351)
.++...+....-+.|+++.... |.++- + + +++++ |--.+++..||=|||+.
T Consensus 85 ~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 85 EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 1122333333345889998884 76652 2 2 33332 22468999999999998
Q ss_pred Cc
Q 018704 335 PS 336 (351)
Q Consensus 335 p~ 336 (351)
..
T Consensus 165 a~ 166 (230)
T PF01946_consen 165 AE 166 (230)
T ss_dssp SS
T ss_pred hH
Confidence 76
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.023 Score=55.46 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEe--cCC--cEEeccEEEEecC-CCCc-cccc
Q 018704 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLIL--NDG--TEVPYGLLVWSTG-VGPS-TLVK 340 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~--~~g--~~~~~D~vi~a~G-~~p~-~~~~ 340 (351)
.+...+.+.+++.||+++++. ++++.. + ++.+ .+| ..+.+|.||+|+| +..+ ++++
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~ 258 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIA 258 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHH
Confidence 345556666778899999984 877753 2 2444 333 3588999999997 6666 4444
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0048 Score=57.82 Aligned_cols=67 Identities=24% Similarity=0.360 Sum_probs=49.5
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC--------CcH------HHHHHHHHHhhh
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS--------FDD------RLRHYATTQLSK 296 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~--------~~~------~~~~~~~~~l~~ 296 (351)
++++|||||.+|++.|.+|++.| .+|+++++.+.+.+ |+. -+...+.+.-..
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G--------------~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~h 190 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMG--------------FKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNH 190 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcC--------------CeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccC
Confidence 69999999999999999999988 99999999754322 221 123344445556
Q ss_pred cCcEEEcC-eEEEEeC
Q 018704 297 SGVRLVRG-IVKDVDS 311 (351)
Q Consensus 297 ~gV~~~~~-~v~~v~~ 311 (351)
.+|++++. +|+++.+
T Consensus 191 p~i~l~TyaeV~ev~G 206 (622)
T COG1148 191 PNIELITYAEVEEVSG 206 (622)
T ss_pred Cceeeeeeeeeeeecc
Confidence 68999988 4887643
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0017 Score=62.17 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=28.3
Q ss_pred EECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 67 VLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 67 IIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
|||+|.+||+||..+++.|.+|+|+|+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999998764
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0076 Score=52.11 Aligned_cols=90 Identities=26% Similarity=0.300 Sum_probs=59.2
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEE-----c----
Q 018704 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLV-----R---- 303 (351)
Q Consensus 233 v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~-----~---- 303 (351)
.+|||||..|+-+|..|+.+. +..++.++..+.+... -.-.+.+.+++++-.|+=- .
T Consensus 2 fivvgggiagvscaeqla~~~------------psa~illitass~vks--vtn~~~i~~ylekfdv~eq~~~elg~~f~ 67 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLE------------PSAEILLITASSFVKS--VTNYQKIGQYLEKFDVKEQNCHELGPDFR 67 (334)
T ss_pred eEEEcCccccccHHHHHHhhC------------CCCcEEEEeccHHHHH--HhhHHHHHHHHHhcCccccchhhhcccHH
Confidence 689999999999999998753 3468888887653321 1222333344443333211 0
Q ss_pred ---CeEEEEe--CCeEEecCCcEEeccEEEEecCCCCc
Q 018704 304 ---GIVKDVD--SQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 304 ---~~v~~v~--~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.|+..+ +.-+++++|.++.++.+++|+|++|-
T Consensus 68 ~~~~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 68 RFLNDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPK 105 (334)
T ss_pred HHHHhhhhhccccceEEecCCceeeEEEEEEecCCCcc
Confidence 1122221 24789999999999999999999998
|
|
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0029 Score=58.70 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC-----CeEEecCCcEEeccEEEEecC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS-----QKLILNDGTEVPYGLLVWSTG 332 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~-----~~v~~~~g~~~~~D~vi~a~G 332 (351)
..++..+.+-+++.|-++.+.. |.+|.- .+|.++||+++.+..|+--++
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt 318 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNAT 318 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCc
Confidence 3567778888899999999984 888753 389999999999977766554
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0021 Score=57.09 Aligned_cols=99 Identities=23% Similarity=0.446 Sum_probs=63.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC---CCCCC---cHHHHHHHH-----HHhhhcCcE
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE---ILSSF---DDRLRHYAT-----TQLSKSGVR 300 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~l~~~---~~~~~~~~~-----~~l~~~gV~ 300 (351)
+|+|||||.-|+.+|..+.+.. ..-+|.+++..+ ..|.+ +..+...-. ..+.-.|.+
T Consensus 41 kvLVvGGGsgGi~~A~k~~rkl------------~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~ 108 (446)
T KOG3851|consen 41 KVLVVGGGSGGIGMAAKFYRKL------------GSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGAT 108 (446)
T ss_pred EEEEEcCCcchhHHHHHHHhhc------------CCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcH
Confidence 8999999999999998887643 226788888753 22221 111111100 001111233
Q ss_pred EEcCeEEEEeC--CeEEecCCcEEeccEEEEecCCCCc-cccccC
Q 018704 301 LVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSL 342 (351)
Q Consensus 301 ~~~~~v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~ 342 (351)
.+...|+++++ +.|.+.+|++|.+|.+|+|.|..-+ ..++.+
T Consensus 109 wi~ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl 153 (446)
T KOG3851|consen 109 WIKEKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGL 153 (446)
T ss_pred HHHHHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcCh
Confidence 33334677765 5899999999999999999998777 555554
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.045 Score=50.77 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=29.7
Q ss_pred hcCcEEEcCe-EEEEeC--Ce--EEe-cCCc--EEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGI-VKDVDS--QK--LIL-NDGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~--~~--v~~-~~g~--~~~~D~vi~a~G~~p~ 336 (351)
..||+++.+. +++++. ++ +.+ .+|+ ++.+|.||.|.|....
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 4679999984 777753 33 343 4664 6899999999998654
|
|
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0068 Score=58.99 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=34.2
Q ss_pred CCCCcEEEECCchhHHHHHHhhhc-cCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie~~~~~ 97 (351)
...+|.+|||||.||...|.+|.+ ..++|+|+|+....
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 456999999999999999999998 57899999988765
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.028 Score=53.08 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=19.5
Q ss_pred eEEEECCChHHHHHHHHHHHH
Q 018704 232 HCVVVGGGPTGVEFSGELSDF 252 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~ 252 (351)
+|+|||||.+|+.+|..|.+.
T Consensus 3 ~VAIIGgG~sGi~~A~~Ll~~ 23 (474)
T COG4529 3 KVAIIGGGFSGIYMAAHLLKS 23 (474)
T ss_pred eEEEECCchHHHHHHHHHHhC
Confidence 899999999999999999864
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0042 Score=50.51 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=30.4
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+|+|||||..|.++|..|++.|.+|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999876
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0041 Score=59.36 Aligned_cols=98 Identities=30% Similarity=0.414 Sum_probs=26.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC---------C--------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS---------F-------------------- 282 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~---------~-------------------- 282 (351)
.|+|||||..|+-.|..+++.| .+|.++++...+.+ +
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G--------------~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~ 66 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAG--------------AKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNR 66 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--------------S-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHS
T ss_pred CEEEECccHHHHHHHHHHHHCC--------------CEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHH
Confidence 3899999999999999999987 89999998653311 0
Q ss_pred ---------------------cHH-HHHHHHHHhhhcCcEEEcCe-EEEEeCC-----eEEecC---CcEEeccEEEEec
Q 018704 283 ---------------------DDR-LRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILND---GTEVPYGLLVWST 331 (351)
Q Consensus 283 ---------------------~~~-~~~~~~~~l~~~gV~~~~~~-v~~v~~~-----~v~~~~---g~~~~~D~vi~a~ 331 (351)
+++ ....+.+.+.+.||+++.++ |.++..+ +|++.+ ..++.|+.||=||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaT 146 (428)
T PF12831_consen 67 LRARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDAT 146 (428)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred Hhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 01122334556788888885 7766532 455543 3568999999999
Q ss_pred CCCCccccccCCCC
Q 018704 332 GVGPSTLVKSLDLP 345 (351)
Q Consensus 332 G~~p~~~~~~~gl~ 345 (351)
|- . .++...|++
T Consensus 147 G~-g-~l~~~aG~~ 158 (428)
T PF12831_consen 147 GD-G-DLAALAGAP 158 (428)
T ss_dssp --------------
T ss_pred cc-c-ccccccccc
Confidence 93 2 344444444
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0063 Score=51.79 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++|+|||||.+|+.-|..|.+.|.+|+|++++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 46899999999999999999999999999998643
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.04 Score=51.96 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=33.4
Q ss_pred HHHHHHhhhcCcEEEcCe-EEEEeC-----CeEEec-CCc--EEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKSGVRLVRGI-VKDVDS-----QKLILN-DGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~gV~~~~~~-v~~v~~-----~~v~~~-~g~--~~~~D~vi~a~G~~p~ 336 (351)
..+.+.+.+.|+.++.+. ++.+.. ..|.+. +|+ ++++|+||-|-|....
T Consensus 107 ~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 107 RDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred HHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence 334445556678888773 555421 367775 775 6899999999997765
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.046 Score=53.47 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhc-CcEEEcCeEEEEeC--C---eEEe--cCCcE--EeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKS-GVRLVRGIVKDVDS--Q---KLIL--NDGTE--VPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~-gV~~~~~~v~~v~~--~---~v~~--~~g~~--~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+.+. +|+++.++++++.. + +|++ .+|++ +.+|+||.|.|....
T Consensus 149 l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~ 209 (514)
T PLN02985 149 FVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSN 209 (514)
T ss_pred HHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchH
Confidence 344455555444 78888887665532 2 3554 35654 568999999998766
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.015 Score=55.94 Aligned_cols=80 Identities=29% Similarity=0.318 Sum_probs=56.9
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEEE
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~v 309 (351)
.|+++|+|+|.+|+.+|..|+..| .+|+++++... ..+ +...+.+...|++++.+....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G--------------~~V~~~d~~~~-----~~~-~~~~~~l~~~~~~~~~~~~~~- 63 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG--------------AKVILTDEKEE-----DQL-KEALEELGELGIELVLGEYPE- 63 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCch-----HHH-HHHHHHHHhcCCEEEeCCcch-
Confidence 469999999999999999999887 89999988531 122 222344566688877664322
Q ss_pred eCCeEEecCCcEEeccEEEEecCCCCc-ccc
Q 018704 310 DSQKLILNDGTEVPYGLLVWSTGVGPS-TLV 339 (351)
Q Consensus 310 ~~~~v~~~~g~~~~~D~vi~a~G~~p~-~~~ 339 (351)
...-.+|.||.++|..++ +++
T Consensus 64 ---------~~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 64 ---------EFLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ---------hHhhcCCEEEECCCCCCCCHHH
Confidence 111248999999999887 544
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.031 Score=55.13 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=35.0
Q ss_pred HHHHHHHHhhh-cCcEEEcCe-EEEEeC--Ce--EEe---cCCc--EEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSK-SGVRLVRGI-VKDVDS--QK--LIL---NDGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~-~gV~~~~~~-v~~v~~--~~--v~~---~~g~--~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+++ .+++++++. +++++. ++ +.+ .+|+ ++.+|.||.|.|.+..
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 33445555554 489999994 888864 33 333 3454 6899999999998765
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.01 Score=53.42 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=65.3
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-E
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (351)
..+++++|||||+.++..|--++..|.++-++=+++... +.+.+.+++.........++++.. .
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL---------------R~FD~~i~~~v~~~~~~~ginvh~~s 251 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL---------------RGFDEMISDLVTEHLEGRGINVHKNS 251 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh---------------cchhHHHHHHHHHHhhhcceeecccc
Confidence 346899999999999999999999999988887766531 112223333333333444666554 2
Q ss_pred EeeeEeCCCCE-EEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 139 HCAGIDTDNHV-VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 139 ~v~~i~~~~~~-v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
.++.+...... ..+.+ +.+. ....|.|+-|+|..|+.-.
T Consensus 252 ~~~~v~K~~~g~~~~i~-~~~~--------i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 252 SVTKVIKTDDGLELVIT-SHGT--------IEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred cceeeeecCCCceEEEE-eccc--------cccccEEEEEecCCCCccc
Confidence 44444333222 22211 3444 5669999999999888764
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0044 Score=55.31 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
...|-|||||.||-.||++++++|..|.++|-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMR 35 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMR 35 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcc
Confidence 467999999999999999999999999999944
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.01 Score=54.62 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=65.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhc----cCceE-EEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT----SLYDV-VCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYF 135 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~----~g~~v-~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (351)
.+..|.|||.|+-|-..|..|.+ .|.+| -||+.+..+. .-+.+++.++--+-.+..++.+
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~---------------kiLPeyls~wt~ekir~~GV~V 410 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME---------------KILPEYLSQWTIEKIRKGGVDV 410 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh---------------hhhHHHHHHHHHHHHHhcCcee
Confidence 34789999999999888888865 46665 4555433221 0011222222222334456766
Q ss_pred EE-EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 136 FL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 136 ~~-~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
+. ..|.++....+.+.+. +++|. ++..|.||+|+|..|+..
T Consensus 411 ~pna~v~sv~~~~~nl~lk-L~dG~--------~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 411 RPNAKVESVRKCCKNLVLK-LSDGS--------ELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred ccchhhhhhhhhccceEEE-ecCCC--------eeeeeeEEEEecCCCchh
Confidence 65 4677777777766663 47787 999999999999998864
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0085 Score=48.68 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=30.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
...+|+|||||..|+.-|..|.+.|.+|+||+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 3578999999999999999999999999999754
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0058 Score=52.84 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=31.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++++|||+|..|.+.|..|.+.|++|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999999764
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.047 Score=51.85 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred eEEEECCChHHHHHHHHHHHHH
Q 018704 232 HCVVVGGGPTGVEFSGELSDFI 253 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~ 253 (351)
+|+|||||..|+-+|..|.+.|
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G 23 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRG 23 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCC
Confidence 7999999999999999998754
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0068 Score=50.51 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=29.0
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+|.|||+|..|...|..+++.|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999999765
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0061 Score=51.02 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=27.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||.|..||..|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998765
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.029 Score=50.64 Aligned_cols=102 Identities=19% Similarity=0.272 Sum_probs=69.6
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHH--HHhhhcCCCCccEEE--E-EeCC-CCCCCCcHHHHHHHHHHhhhcCcEE
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRD--VRQRYSHVKDYIHVT--L-IEAN-EILSSFDDRLRHYATTQLSKSGVRL 301 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~--~~~~~~~~~~~~~v~--~-~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~ 301 (351)
+..-.|+|||||+.|.-.|-+.++.|-+. +.++|. -+|- + ++.- .......+.+...+++++++..|.+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG-----GQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDi 283 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG-----GQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDV 283 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC-----CeeccccchhheeccccccchHHHHHHHHHHhhcCchh
Confidence 44458999999999999999988876211 111221 1110 0 0000 0112345788999999999999998
Q ss_pred EcCe-EEEEeC-------CeEEecCCcEEeccEEEEecCCC
Q 018704 302 VRGI-VKDVDS-------QKLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 302 ~~~~-v~~v~~-------~~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
+... .+.+++ -.|++++|-.+++..+|++||.+
T Consensus 284 mn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 284 MNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 8873 555543 26889999999999999999965
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.04 Score=50.30 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=58.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC---------CCCCc--HHHHHHHHHHhhhcCcE
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---------LSSFD--DRLRHYATTQLSKSGVR 300 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------l~~~~--~~~~~~~~~~l~~~gV~ 300 (351)
+|+|||+|+.|+=.|..|.+. .++.+|++++..+. .|+.+ +.+.+.+.+.+++....
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~------------~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfs 89 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKR------------HPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFS 89 (468)
T ss_pred eEEEECCCchHHHHHHHHHhc------------CCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceE
Confidence 899999999999998888752 13489999998642 23222 34566677777777777
Q ss_pred EEcC-eEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 301 LVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 301 ~~~~-~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+..| .| ++-+.+.+ -+-.+|+||+|.|....
T Consensus 90 f~gNv~v----G~dvsl~e-L~~~ydavvLaYGa~~d 121 (468)
T KOG1800|consen 90 FFGNVKV----GRDVSLKE-LTDNYDAVVLAYGADGD 121 (468)
T ss_pred EEeccee----cccccHHH-HhhcccEEEEEecCCCC
Confidence 7666 23 11122221 12358899999987655
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.008 Score=57.96 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=31.2
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+|+|||.|++|+++|..|.+.|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5999999999999999999999999999987643
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.018 Score=48.86 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.5
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 275 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~ 275 (351)
.+++|+|||||.+|...+..|...+ .+|+++.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g--------------a~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG--------------AHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEcC
Confidence 3469999999999999999998766 88999965
|
|
| >KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0041 Score=58.99 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=34.2
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
....||+|||||..|-.||...+.+|+++.++|.++.-
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~ 102 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFA 102 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEeccccc
Confidence 45689999999999999999999999999999977543
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.11 Score=50.21 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhcCcEEEcCeEEEEe--CCe---EEecCCcEEeccEEEEecCCCCc
Q 018704 285 RLRHYATTQLSKSGVRLVRGIVKDVD--SQK---LILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~v~~v~--~~~---v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+++.||+++.+.++.+. ++. +.. +|..+.+|.||+|||-...
T Consensus 121 ~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 121 HIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 34455555666778888776555543 222 333 5667899999999997766
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.017 Score=49.55 Aligned_cols=53 Identities=13% Similarity=0.286 Sum_probs=37.3
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG 304 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~ 304 (351)
+.++|+|||||.+|..=+..|.+.+ .+|+++-+. +.+++ .+..+...|+++..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~g--------------A~VtVVap~-----i~~el----~~l~~~~~i~~~~r 76 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKG--------------CYVYILSKK-----FSKEF----LDLKKYGNLKLIKG 76 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEcCC-----CCHHH----HHHHhCCCEEEEeC
Confidence 3469999999999999888888876 899999642 22333 33344456666553
|
|
| >KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0083 Score=55.19 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=29.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhc----cCceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~----~g~~v~vie~~ 94 (351)
..+|||||||||+|++.|..|.. ...+|+|+|..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 36899999999999999999975 45689999965
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.034 Score=44.64 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=49.0
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC
Q 018704 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS 311 (351)
Q Consensus 233 v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~ 311 (351)
|+|+|+|.+|+-+|..|...+ .+|+++.|. . ..+.+++.|+.+.... -..+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--------------~~V~l~~r~--------~----~~~~~~~~g~~~~~~~~~~~~~- 53 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--------------HDVTLVSRS--------P----RLEAIKEQGLTITGPDGDETVQ- 53 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--------------CEEEEEESH--------H----HHHHHHHHCEEEEETTEEEEEE-
T ss_pred CEEECcCHHHHHHHHHHHHCC--------------CceEEEEcc--------c----cHHhhhheeEEEEecccceecc-
Confidence 689999999999999998866 899999883 1 2234677788887764 11111
Q ss_pred CeEEecCC--cEEeccEEEEecCCC
Q 018704 312 QKLILNDG--TEVPYGLLVWSTGVG 334 (351)
Q Consensus 312 ~~v~~~~g--~~~~~D~vi~a~G~~ 334 (351)
......+. ..-++|.||+|+=..
T Consensus 54 ~~~~~~~~~~~~~~~D~viv~vKa~ 78 (151)
T PF02558_consen 54 PPIVISAPSADAGPYDLVIVAVKAY 78 (151)
T ss_dssp EEEEESSHGHHHSTESEEEE-SSGG
T ss_pred cccccCcchhccCCCcEEEEEeccc
Confidence 11222221 234689999997543
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.035 Score=53.37 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=55.7
Q ss_pred cccCeEEEECC-ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeE
Q 018704 228 SRLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIV 306 (351)
Q Consensus 228 ~~~~~v~VvGg-G~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v 306 (351)
-++|+|.|-|| |-+|-+++..+++.++ .++.++.+++..- ..+...+.+......++.+.|.|
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p-------------~~i~l~~~~E~~~---~~i~~el~~~~~~~~~~~~igdV 311 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNP-------------KEIILFSRDEYKL---YLIDMELREKFPELKLRFYIGDV 311 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCC-------------CEEEEecCchHHH---HHHHHHHHhhCCCcceEEEeccc
Confidence 35589999886 5689999999988653 7888998874210 12222222222223444444444
Q ss_pred EEEeCCeEEecCCcEEeccEEEEecCCCCcccccc
Q 018704 307 KDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKS 341 (351)
Q Consensus 307 ~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~ 341 (351)
.+.+. +.-. =+.+..|.|+.|.-++.-|+++.
T Consensus 312 rD~~~--~~~~-~~~~kvd~VfHAAA~KHVPl~E~ 343 (588)
T COG1086 312 RDRDR--VERA-MEGHKVDIVFHAAALKHVPLVEY 343 (588)
T ss_pred ccHHH--HHHH-HhcCCCceEEEhhhhccCcchhc
Confidence 32211 1000 02366899999998887665554
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.014 Score=49.48 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
..++|+|||||-.|...|..|.+.|.+|+|++++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3479999999999999999999999999999874
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.013 Score=56.26 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.++|+|||+|.+|+++|..|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4789999999999999999999999999999864
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.038 Score=56.82 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=28.1
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
+|+|||||+.|+-+|..|.+.+ ++.+|+++++..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~------------~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLD------------PAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEecCC
Confidence 7999999999999999998761 127888888864
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.078 Score=49.07 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=28.2
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
+|+|||||..|+-.|..|.+.| .+|.+++.+
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G--------------~~v~VlE~~ 34 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKG--------------IDVVVLESR 34 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcC--------------CeEEEEeec
Confidence 8999999999999999999987 888888775
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.019 Score=47.27 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=29.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+.+|+|+|+|.+|..||..|...|.+|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 34799999999999999999999999999999754
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.018 Score=45.14 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=31.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..++++||.| .|.+.|..|++.|++|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3689999999 999999999999999999998765
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.031 Score=38.32 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=26.4
Q ss_pred EECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC
Q 018704 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL 279 (351)
Q Consensus 235 VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l 279 (351)
|||+|.+|+-+|..|.+.+ .+|+++++.+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g--------------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--------------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--------------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCC--------------CcEEEEecCccc
Confidence 7999999999999999866 899999997543
|
... |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.012 Score=52.69 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=62.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE---
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS--- 138 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 138 (351)
+-+.+|||||..+|.||-.|+..|++|++.=+.=. .+-+...+...........++.|...
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~----------------LrGFDqdmae~v~~~m~~~Gikf~~~~vp 261 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSIL----------------LRGFDQDMAELVAEHMEERGIKFLRKTVP 261 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEee----------------cccccHHHHHHHHHHHHHhCCceeecccc
Confidence 35789999999999999999999999988766321 11122233333333344456666543
Q ss_pred -EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 139 -~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
.|+.++...-.+.......++ .....||.|+.|.|..+...
T Consensus 262 ~~Veq~~~g~l~v~~k~t~t~~------~~~~~ydTVl~AiGR~~~~~ 303 (503)
T KOG4716|consen 262 ERVEQIDDGKLRVFYKNTNTGE------EGEEEYDTVLWAIGRKALTD 303 (503)
T ss_pred eeeeeccCCcEEEEeecccccc------cccchhhhhhhhhccccchh
Confidence 555555443222222212222 12677999999999876654
|
|
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.1 Score=48.70 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=50.9
Q ss_pred CCCCC--CcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC--eEEecCC-cEEeccEEEEecCCCCc----------cccc
Q 018704 277 EILSS--FDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--KLILNDG-TEVPYGLLVWSTGVGPS----------TLVK 340 (351)
Q Consensus 277 ~~l~~--~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~--~v~~~~g-~~~~~D~vi~a~G~~p~----------~~~~ 340 (351)
++.|. -..++.+.+.+.+++.||+++++. |++++++ .+.+.++ ..++||.||+|+|-.+. .+++
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~ 156 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLD 156 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHH
Confidence 44443 347888999999999999999995 9999554 3444333 46999999999997542 3566
Q ss_pred cCCCCC
Q 018704 341 SLDLPK 346 (351)
Q Consensus 341 ~~gl~~ 346 (351)
++|..+
T Consensus 157 ~lGh~i 162 (376)
T TIGR03862 157 QRGVSV 162 (376)
T ss_pred HCCCcc
Confidence 666554
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.021 Score=45.07 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=28.2
Q ss_pred EEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 65 VVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 65 VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|+|+|+.+.+.|..++..|++|+++|+++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999764
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.032 Score=50.14 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=31.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|.|||+|..|...|..+++.|++|+++|..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4899999999999999999999999999998765
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.034 Score=44.67 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=29.2
Q ss_pred EEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 65 VVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 65 VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
|+|||+|..|...|..|++.|.+|+++.+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999855
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.039 Score=51.55 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=31.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...+|+|||+|.+|+.+|..|.+.|.+|+++|++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 34679999999999999999999999999999854
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.028 Score=51.17 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=31.5
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||+|..|.+.|..|++.|++|+++|+.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4799999999999999999999999999998754
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.053 Score=52.01 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=30.3
Q ss_pred CCCCcEEEECC-chhHHHHHHhhhccCceEEEEcC
Q 018704 60 NEKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 60 ~~~~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
-+.++|+|.|| |..|...+..|.+.|++|+++|+
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN 79 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence 34578999996 99999999999999999999984
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.041 Score=50.17 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=31.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|.|||+|..|...|..++..|++|+++|+.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998754
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.043 Score=43.35 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=31.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCce-EEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~ 95 (351)
...+++|||+|-+|-+++..|...|.+ ++|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 357999999999999999999999987 99998854
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.031 Score=54.09 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=32.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...+|+|||+|++||.++..++..|.+|+++|.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357999999999999999999999999999998654
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.15 Score=47.24 Aligned_cols=42 Identities=10% Similarity=0.057 Sum_probs=28.3
Q ss_pred EEeeeEeCCCCE-EEEEe--ecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 138 SHCAGIDTDNHV-VHCET--VTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 138 ~~v~~i~~~~~~-v~~~~--~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
.+|..+...+.. +.+.. ...++ .+++.+|.||+|||-....|
T Consensus 299 ~ev~~~~~~G~g~~~l~~~~~~~~~------~~t~~~D~vIlATGY~~~~P 343 (436)
T COG3486 299 SEVQSVEPAGDGRYRLTLRHHETGE------LETVETDAVILATGYRRAVP 343 (436)
T ss_pred cceeeeecCCCceEEEEEeeccCCC------ceEEEeeEEEEecccccCCc
Confidence 477888777643 44432 22233 35899999999999886666
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.041 Score=49.68 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 36799999999999999999999999999998654
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.045 Score=49.95 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.++|+|||+|..|...|..|++.|++|+++.+++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4689999999999999999999999999998854
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 351 | ||||
| 4g6g_A | 502 | Crystal Structure Of Ndh With Trt Length = 502 | 5e-40 | ||
| 4g9k_A | 471 | Structure Of The Ndi1 Protein From Saccharomyces Ce | 2e-39 | ||
| 3hyw_A | 430 | 3-D X-Ray Structure Of The Sulfide:quinone Oxidored | 2e-06 | ||
| 3hyv_A | 430 | 3-D X-Ray Structure Of The Sulfide:quinone Oxidored | 2e-06 | ||
| 1q1r_A | 431 | Crystal Structure Of Putidaredoxin Reductase From P | 3e-04 | ||
| 3lb8_A | 436 | Crystal Structure Of The Covalent Putidaredoxin Red | 3e-04 |
| >pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt Length = 502 | Back alignment and structure |
|
| >pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces Cerevisiae Length = 471 | Back alignment and structure |
|
| >pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase Of The Hyperthermophilic Bacterium Aquifex Aeolicus In Complex With Decylubiquinone Length = 430 | Back alignment and structure |
|
| >pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase From The Hyperthermophilic Bacterium Aquifex Aeolicus Length = 430 | Back alignment and structure |
|
| >pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431 | Back alignment and structure |
|
| >pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 3e-35
Identities = 52/300 (17%), Positives = 106/300 (35%), Gaps = 25/300 (8%)
Query: 63 PRVVVLGSGWAGC----RLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAE 118
+V+VLG + L + + + DV ++ F P L +G + +
Sbjct: 2 TKVLVLGGRFGALTAAYTLKRLVGSKA-DVKVINKSRFSYFRPALPHVAIGVRDVDELKV 60
Query: 119 PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178
++ P E G F ID + +V+ + YD +++ +
Sbjct: 61 DLSEALP----EKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAE-------EEYDYVIVGI 109
Query: 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKLL----LNLMLSDVPGISEEEKSRLLHCV 234
GA +T + G + + E A ++R KL N+ + P +
Sbjct: 110 GAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPEN 169
Query: 235 VVGGGP-TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V E+S ++ ++ + D +HVT+ E LS R +
Sbjct: 170 FVPNADSACEGPVFEMS-LMLHGYFKKK-GMLDKVHVTVFSPGEYLSDLSPNSRKAVASI 227
Query: 294 LSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVK-SLDLPKSPGGR 351
++ G++LV +K++ +++ G +P + + + +K S GG
Sbjct: 228 YNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGF 287
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 45/310 (14%), Positives = 92/310 (29%), Gaps = 44/310 (14%)
Query: 60 NEKPRVVVLGSGWAGC----RLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS 115
VV+LG+G G + + + + +V +S ++ F P VG E
Sbjct: 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGH-EVTLISANDYFQFVPSNPWVGVGWKERDD 60
Query: 116 VAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLV 175
+A PI + R+ G +F ID + + + YD L+
Sbjct: 61 IAFPIRHY---VERK-GIHFIAQSAEQIDAEAQNITLADGN-----------TVHYDYLM 105
Query: 176 IALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235
IA G + + + G + ++ + R + +
Sbjct: 106 IATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAE---------YQALLREPGPIVIG 156
Query: 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDR----LRHYAT 291
G + + E + I+ ++ T I + + + + T
Sbjct: 157 AMAGASCFGPAYEYA-MIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILT 215
Query: 292 TQLSKSGVRLVRG-IVKDVDSQKLILNDGT---------EVPYGLLVWSTGVGPSTLVKS 341
L + G+ V V+ K+ + +P + V
Sbjct: 216 KGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAG 275
Query: 342 LDLPKSPGGR 351
++ +PGG
Sbjct: 276 VEGLCNPGGF 285
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 1e-21
Identities = 38/212 (17%), Positives = 81/212 (38%), Gaps = 42/212 (19%)
Query: 143 IDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHH 202
I+ + V +V + +T E +F+ SYDKL+++ GA A++ G + LR +
Sbjct: 84 INDERQTV---SVLN-RKTNE--QFEESYDKLILSPGASANSLGFES--DITFTLRNLED 135
Query: 203 AQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQRY 261
I + + + + +VVG G +E + + R
Sbjct: 136 TDAIDQFI-------------KANQVD--KVLVVGAGYVSLE----VLENLYERG----- 171
Query: 262 SHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDG 319
+H TLI +++I D + +L K + + ++ ++ G
Sbjct: 172 ------LHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSG 225
Query: 320 TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGG 350
Y +++ G P++ ++S ++ G
Sbjct: 226 KVEHYDMIIEGVGTHPNSKFIESSNIKLDRKG 257
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 43/218 (19%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
ID H V + + LRT E + + YDKLV+ALG++A+ + G+ T + +
Sbjct: 91 AIDRAAHTV---EIEN-LRTGE--RRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNL 144
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260
A+ ++ + + V+VGGG G+E + L+D
Sbjct: 145 DEAEFVQHAI-------------SAGEVS--KAVIVGGGFIGLEMAVSLAD--------- 180
Query: 261 YSHVKDYIHVTLIE-ANEILSSFDDR-LRHYATTQLSKSGVRL-----VRGIVKDVDSQK 313
I T++E A++I+ F + L L K+ V + V + +
Sbjct: 181 ----MWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVA 236
Query: 314 LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGG 350
++ D + L++ + GV P+T L + L P G
Sbjct: 237 RVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRG 274
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 5e-20
Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 48/219 (21%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK--ENATFLRE 199
I+ + + T+ + + T E + +YD L+++ GA+ I G++ + LR
Sbjct: 118 KINKEEKTI---TIKN-VTTNE--TYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRN 171
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVR 258
V I+ + +E+K R H V+GGG GVE + + R
Sbjct: 172 VPDTDRIKAYI-------------DEKKPR--HATVIGGGFIGVE----MVENLRERG-- 210
Query: 259 QRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
I VTL+E AN+++ D + Y + V L V + ++
Sbjct: 211 ---------IEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEEN--GA 259
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGG 350
+ L G+ + +L+ + GV P + L K L G
Sbjct: 260 VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRG 298
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 5e-20
Identities = 41/218 (18%), Positives = 82/218 (37%), Gaps = 46/218 (21%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
+DT+ +V +T + F+ SYD+L+IA G G + L+ +
Sbjct: 118 KVDTEKKIV---YAEH-TKTKD--VFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTI 171
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
A+ I + L E K ++GGG G+E +++ F+
Sbjct: 172 PDAERILKTL-------------ETNKVE--DVTIIGGGAIGLE----MAETFVELG--- 209
Query: 260 RYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQK 313
V +IE + I + +D + Y + K + + V+ + + +
Sbjct: 210 --------KKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGN-ERVE 260
Query: 314 LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGG 350
+ D L++ S GV P+T ++ ++ + G
Sbjct: 261 AVETDKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKG 298
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 6e-18
Identities = 43/205 (20%), Positives = 75/205 (36%), Gaps = 46/205 (22%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
I H V TV D L + E + +YDKL+I+ GA I G +N +R
Sbjct: 81 AIQPKEHQV---TVKD-LVSGE--ERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGR 134
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
A ++++K + + + VV+G G G+E ++ F
Sbjct: 135 QWAIKLKQKT-------------VDPEVN--NVVVIGSGYIGIE----AAEAFAKAG--- 172
Query: 260 RYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
VT+I+ + L D T ++ + + + V D
Sbjct: 173 --------KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD-GRV 223
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST 337
+ ++ D L+V + GV P+T
Sbjct: 224 QKVVTDKNAYDADLVVVAVGVRPNT 248
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 82.5 bits (205), Expect = 1e-17
Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 47/205 (22%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
+D + + V D L T E + +YDKL++ G++ + I G+ +
Sbjct: 83 NVDPETKTI---KVKD-LITNE--EKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNY 136
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
+ A+++ + K++ ++G G G E L++ + ++
Sbjct: 137 NDAKKLFEEA---------------PKAK--TITIIGSGYIGAE----LAEAYSNQN--- 172
Query: 260 RYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
+V LI+ +L FD GV L V + D
Sbjct: 173 --------YNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEI 224
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST 337
DG E+ + + G P+T
Sbjct: 225 ITKTLDGKEIKSDIAILCIGFRPNT 249
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 49/237 (20%), Positives = 83/237 (35%), Gaps = 64/237 (27%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
ID +V TV L +++ SYD L+++ GA I GV LR +
Sbjct: 83 AIDRAAKLV---TVRR-LLDGS--EYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNI 136
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
I + + + + + H VVGGG G+ E+ +
Sbjct: 137 PDMDRILQTI---------------QMNNVEHATVVGGGFIGL----EMMESLHHLG--- 174
Query: 260 RYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ- 312
I TL+E A+++++ D + +A + GV L + + V +
Sbjct: 175 --------IKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHV 226
Query: 313 ------------------KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGG 350
L L++G + LL+ + GV P T L + L G
Sbjct: 227 ASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELG 283
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 79.8 bits (198), Expect = 8e-17
Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 52/219 (23%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
+DT V + +D LV A GA I GV +
Sbjct: 84 EVDTGYVRV---RENGG-------EKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLP 133
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
A IR + EK ++ + V++GGG G+E +++ F +
Sbjct: 134 PDALAIREYM---------------EKYKVENVVIIGGGYIGIE----MAEAFAAQG--- 171
Query: 260 RYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
+VT+I +L SFD + +L K V L I + +
Sbjct: 172 --------KNVTMIVRGERVLRRSFDKEVTDILEEKLKK-HVNLRLQEITMKIEGE-ERV 221
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGG 350
+ ++ D E L++ +TG+ P+ L K L + G
Sbjct: 222 EKVVTDAGEYKAELVILATGIKPNIELAKQLGVRIGETG 260
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 79.4 bits (197), Expect = 1e-16
Identities = 37/205 (18%), Positives = 64/205 (31%), Gaps = 50/205 (24%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
+D +N ++ ++ SYDKL++A GA + I G E + +
Sbjct: 83 AMDVENQLIAWTRKEEQ--------QWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFL 134
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
A L E S+ V+G GP G+E D +
Sbjct: 135 SGALAAVPLL---------------ENSQ--TVAVIGAGPIGME----AIDFLVKMK--- 170
Query: 260 RYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
V + E +L FD + L K V V GI + +
Sbjct: 171 --------KTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEET-ANG 221
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST 337
++ E+ +++ + P
Sbjct: 222 IVLETSEQEISCDSGIFALNLHPQL 246
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 42/216 (19%), Positives = 76/216 (35%), Gaps = 59/216 (27%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK---------- 191
ID D V + +YDKL+ A G++ I G +
Sbjct: 117 SIDYDAKTVTALV-DGK-------NHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEA 168
Query: 192 --ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGEL 249
EN F++ ++ ++ KL E + VVG G GVE L
Sbjct: 169 TLENLQFVKLYQNSADVIAKL---------------ENKDIKRVAVVGAGYIGVE----L 209
Query: 250 SD-FIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL----- 301
++ F + V LI+ + L+ +D L + + G++L
Sbjct: 210 AEAFQRKG-----------KEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGET 258
Query: 302 VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 337
V+ + + + I+ D E +++ + G P+T
Sbjct: 259 VKEVAGN-GKVEKIITDKNEYDVDMVILAVGFRPNT 293
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 6e-13
Identities = 57/286 (19%), Positives = 103/286 (36%), Gaps = 61/286 (21%)
Query: 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVA 117
+ +VV++G+G G L K + Y+V + ++ P+L+ G +
Sbjct: 5 HHHGSKVVIVGNGPGGFELAKQLS-QTYEVTVIDKEPVPYYSKPMLSHYIAGFIP----R 59
Query: 118 EPIARIQPAISREPGSYFFLSHCA-GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176
+ R+ G L+ A ID VV E ++ YD LV+
Sbjct: 60 NRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEK------------GEVPYDTLVL 107
Query: 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236
A GA A I G KE LR + A I+ + E S +++
Sbjct: 108 ATGARAREPQIKG-KEYLLTLRTIFDADRIKESI---------------ENSG--EAIII 149
Query: 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296
GGG G+E +G L++ V LI + D+ L + L +
Sbjct: 150 GGGFIGLELAGNLAEAGYH--------------VKLIHRGAMFLGLDEELSNMIKDMLEE 195
Query: 297 SGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 337
+GV+ + ++ +L + + + + + G+ P+
Sbjct: 196 TGVKFFLNSELLEANEEG-----VLTNSGFIEGKVKICAIGIVPNV 236
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 8e-11
Identities = 33/209 (15%), Positives = 70/209 (33%), Gaps = 50/209 (23%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG-----VKENAT 195
+D +++V + +I+Y+K +IA G + VK T
Sbjct: 114 VQLDVRDNMVKLNDGS-----------QITYEKCLIATGGTPRSLSAIDRAGAEVKSRTT 162
Query: 196 FLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR 255
R++ + + + E + ++GGG G E + L R
Sbjct: 163 LFRKIGDFRSLEKIS--------------REVKSI---TIIGGGFLGSELACALG----R 201
Query: 256 DVRQRYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQLSKSGVRL-----VRGIVKD 308
R V + + + L ++ ++ + GV++ V+ +
Sbjct: 202 KARAL------GTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS 255
Query: 309 VDSQKLILNDGTEVPYGLLVWSTGVGPST 337
+ L DG +V +V + G+ P+
Sbjct: 256 SGKLLIKLKDGRKVETDHIVAAVGLEPNV 284
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 42/287 (14%), Positives = 91/287 (31%), Gaps = 67/287 (23%)
Query: 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVA 117
++ ++++LG+G AG K D+ ++ ++ + P L
Sbjct: 6 HHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSI---- 61
Query: 118 EPIARIQPAISREPGSYFFLSHCA-GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176
+ I + + S A ID +N +V ++ KI Y+KL+I
Sbjct: 62 DDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGE-----------KIKYEKLII 110
Query: 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236
A G+ A+ + + L A +I+ + + ++
Sbjct: 111 ASGSIANKIKVPH-ADEIFSLYSYDDALKIKDEC---------------KNKG--KAFII 152
Query: 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRL--RHYATTQL 294
GGG G+E + + D ++ + R QL
Sbjct: 153 GGGILGIELAQAIIDSGTP--------------ASIGI-------ILEYPLER-----QL 186
Query: 295 SKSGVRLVRGIVKD----VDSQKLILNDGTEVPYGLLVWSTGVGPST 337
+ G ++ + + + G + ++ + GV P+
Sbjct: 187 DRDGGLFLKDKLDRLGIKIYTNSNFEEMGDLIRSSCVITAVGVKPNL 233
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 6e-10
Identities = 52/300 (17%), Positives = 100/300 (33%), Gaps = 78/300 (26%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGI---DTSLYDVVCVSPRNHMVFT---------PLLASTC 107
+E+ +V++G+G AG L + D ++ + T P+L++
Sbjct: 2 SERAPLVIIGTGLAGYNLAREWRKLDGE-TPLL--------MITADDGRSYSKPMLSTGF 52
Query: 108 VGTLEFRSVAEPIARIQPAISREPGSYFFLSHC--AGIDTDNHVVHCETVTDELRTLEPW 165
+ A+ +A +P E + L+H GID + +
Sbjct: 53 SKNKD----ADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEE--------- 99
Query: 166 KFKISYDKLVIALGAEASTFGIHGV-KENATFLREVHHAQEIRRKLLLNLMLSDVPGISE 224
+ Y LV+A GAE + G ++ + ++ R+
Sbjct: 100 ---VRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAA-------------- 142
Query: 225 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--SSF 282
R +++G G G EF+ +LS + ++ E +
Sbjct: 143 -AGKR--RVLLLGAGLIGCEFANDLSSGGY--------------QLDVVAPCEQVMPGLL 185
Query: 283 DDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 337
L GVR + + K + + L+DG +P L+V + G+ P T
Sbjct: 186 HPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRT 245
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 50/243 (20%), Positives = 82/243 (33%), Gaps = 56/243 (23%)
Query: 120 IARIQPAISREPGSY-FFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKIS 170
IA A+S SY + G+ DNH V V + +
Sbjct: 95 IAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTV---LVRESADPNSAVLETLD 151
Query: 171 YDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRL 230
+ +++A G+ GI G + E L + P
Sbjct: 152 TEYILLATGSWPQHLGIEG-DDLCITSNEA-------------FYLDEAPK--------- 188
Query: 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHY 289
+ VGGG +EF+G + + R V L + IL FD LR
Sbjct: 189 -RALCVGGGYISIEFAGIFNAYKARGG-----------QVDLAYRGDMILRGFDSELRKQ 236
Query: 290 ATTQLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPSTLVKSLD 343
T QL +G+ + + K+ D + + G E Y +++ + G P + ++L
Sbjct: 237 LTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS--QTLQ 294
Query: 344 LPK 346
L K
Sbjct: 295 LEK 297
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 6e-09
Identities = 39/205 (19%), Positives = 71/205 (34%), Gaps = 50/205 (24%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLRE 199
+D + + T +S D +VIA G+ A T + G + LR
Sbjct: 81 TALDVQTRTISLDDGT-----------TLSADAIVIATGSRARTMALPGSQLPGVVTLRT 129
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259
Q +R +RL ++VGGG G E + R+
Sbjct: 130 YGDVQVLRDSW--------------TSATRL---LIVGGGLIGCEVATTA--------RK 164
Query: 260 RYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
+ VT++EA + L R+ + L++ GV++ V G + +
Sbjct: 165 L------GLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLE 218
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST 337
+++ +DG + G P+
Sbjct: 219 QVMASDGRSFVADSALICVGAEPAD 243
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 6e-09
Identities = 47/238 (19%), Positives = 80/238 (33%), Gaps = 62/238 (26%)
Query: 120 IARIQPAISREPGSY-FFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKIS 170
IA A+ SY + G+D +VV V + K ++
Sbjct: 99 IAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVV---VVRETADPKSAVKERLQ 155
Query: 171 YDKLVIALGAEASTFGI----HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEE 226
D +++A G+ I H + N F L + P
Sbjct: 156 ADHILLATGSWPQMPAIPGIEHCISSNEAF------------------YLPEPPR----- 192
Query: 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDR 285
+ VGGG VEF+G + + + VTL N IL FD+
Sbjct: 193 -----RVLTVGGGFISVEFAGIFNAYKPPGGK-----------VTLCYRNNLILRGFDET 236
Query: 286 LRHYATTQLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPST 337
+R T QL+ +G+ ++ + + D K + G + +++ + G P T
Sbjct: 237 IREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT 294
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 46/201 (22%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLRE 199
D H V + Y LV+A GA LR
Sbjct: 83 QSFDPQAHTVALSDGR-----------TLPYGTLVLATGAAPRALPTLQGATMPVHTLRT 131
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259
+ A+ I+ L +SRL ++VGGG G+E + R
Sbjct: 132 LEDARRIQAGL--------------RPQSRL---LIVGGGVIGLELAATA--------RT 166
Query: 260 RYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLIL 316
+HV+L+E L + L + + GV L V ++L
Sbjct: 167 A------GVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLL 220
Query: 317 NDGTEVPYGLLVWSTGVGPST 337
+DGT + ++V GV +
Sbjct: 221 DDGTRIAADMVVVGIGVLAND 241
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 7e-08
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 20/110 (18%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
V+VGGG GVEF+ VK TL+ + IL +FD LR
Sbjct: 195 VIVGGGYIGVEFANIFHGL----------GVK----TTLLHRGDLILRNFDYDLRQLLND 240
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 337
+ G+ ++ + + ++L +G + ++ +TG P+T
Sbjct: 241 AMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNT 290
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 9e-08
Identities = 51/364 (14%), Positives = 103/364 (28%), Gaps = 107/364 (29%)
Query: 12 TAKSYSYSSPSIIMPSNLILTCLSHFTTDA---SPSTV-------QLTQYSGLGPTKANE 61
+ PS M + + + D + V +L Q L +
Sbjct: 96 SPIKTEQRQPS--MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--AL--LELRP 149
Query: 62 KPRVVVLGSGWAGCRLMKGI-DTSL-------YDVVCVSPRNHMVF--------TP---- 101
V++ G + G T + Y V C +F +P
Sbjct: 150 AKNVLIDG--------VLGSGKTWVALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVL 199
Query: 102 -LLASTCVG-TLEFRSVAEPIARIQPAIS--REPGSYFFLSHCAGIDTDNHVVHCETVTD 157
+L + S ++ + I+ I + S + +C V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-------PYE-NCLLVLL 251
Query: 158 ELRTLEPWK-FKI-------SYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRK 209
++ + W F + + K V + A+T I + T + + + K
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLK 309
Query: 210 LLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH 269
L + D+P E + ++ + D + + HV
Sbjct: 310 YL-DCRPQDLP--REVLTTNPRRLSIIAE---------SIRDGLAT--WDNWKHVNCDKL 355
Query: 270 VTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLL- 327
T+IE++ +L + R + + +LS + +P LL
Sbjct: 356 TTIIESSLNVLEPAEYR-KMF--DRLS-------------------VFPPSAHIPTILLS 393
Query: 328 -VWS 330
+W
Sbjct: 394 LIWF 397
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 5e-06
Identities = 44/290 (15%), Positives = 93/290 (32%), Gaps = 85/290 (29%)
Query: 74 GCR-LMKGIDTSLYDVVCVSPRNHMV-------FTP-----LLASTCVGTLEFRSVAEPI 120
C+ L+ + D + + H+ TP LL + + + +
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDC-RPQDLPREV 322
Query: 121 ARIQP-AIS------RE-PGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYD 172
P +S R+ ++ H ++ D + L LEP +++ +D
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKH---VNCDKLT---TIIESSLNVLEPAEYRKMFD 376
Query: 173 KLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLL----LNLMLSDVPGISEE-EK 227
+L + F H I LL +++ SDV + + K
Sbjct: 377 RLSV-------------------FPPSAH----IPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD--DR 285
L+ E + + I +++ + + +H ++++ I +FD D
Sbjct: 414 YSLVEK-------QPKESTISIPS-IYLELKVKLENEYA-LHRSIVDHYNIPKTFDSDDL 464
Query: 286 L-------------RHYATTQLSKSGVRLVRGIVKDVD--SQKLILNDGT 320
+ H + + + L R + D QK+ +D T
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPER-MTLFRMVFLDFRFLEQKIR-HDST 512
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 50/206 (24%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLRE 199
+D H V + I Y KL+ A G + G +R
Sbjct: 89 VSLDPAAHTVKLGDGS-----------AIEYGKLIWATGGDPRRLSCVGADLAGVHAVRT 137
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259
A + +L + ++ + VV+GGG G+E + L +
Sbjct: 138 KEDADRLMAEL--------------DAGAK--NAVVIGGGYIGLEAAAVL--------TK 173
Query: 260 RYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDS- 311
++VTL+EA + + L + + GV L + I D
Sbjct: 174 F------GVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKV 227
Query: 312 QKLILNDGTEVPYGLLVWSTGVGPST 337
+ + DG+ +P +++ G+ P
Sbjct: 228 TGVRMQDGSVIPADIVIVGIGIVPCV 253
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 39/206 (18%), Positives = 75/206 (36%), Gaps = 51/206 (24%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLRE 199
ID + + + T I Y LV+A GA + + +LR
Sbjct: 80 VSIDREGRKLLLASGT-----------AIEYGHLVLATGARNRMLDVPNASLPDVLYLRT 128
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259
+ ++ +R+++ +K + VV+G G G+EF+ R
Sbjct: 129 LDESEVLRQRM--------------PDKKHV---VVIGAGFIGLEFAATA--------RA 163
Query: 260 RYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDS- 311
+ + V ++E + + Y + S +G+R+ I + D
Sbjct: 164 K------GLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRV 217
Query: 312 QKLILNDGTEVPYGLLVWSTGVGPST 337
++L+DG +P L+V GV P+
Sbjct: 218 TGVVLSDGNTLPCDLVVVGVGVIPNV 243
|
| >1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 26/129 (20%), Positives = 38/129 (29%), Gaps = 32/129 (24%)
Query: 62 KPRVVVLGSGWAGC-------RLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV--GTLE 112
+VVV+G G G I +V + P L S V G +
Sbjct: 2 GRKVVVVGGGTGGATAAKYIKLADPSI-----EVTLIEPNTDYYTCYL--SNEVIGGDRK 54
Query: 113 FRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYD 172
S+ ++ G GID D +V + YD
Sbjct: 55 LESIKHGYDGLRA-----HGIQVVHDSATGIDPDKKLVKTAGGA-----------EFGYD 98
Query: 173 KLVIALGAE 181
+ V+A G E
Sbjct: 99 RCVVAPGIE 107
|
| >1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 6e-06
Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 29/115 (25%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-------------LS 280
VVVGGG G + + I VTLIE N
Sbjct: 6 VVVGGGTGGATAAKYIKLA------------DPSIEVTLIEPNTDYYTCYLSNEVIGGDR 53
Query: 281 SFDDRLRHYATTQLSKSGVRLVRGIVKDVD--SQKLILNDGTEVPYGLLVWSTGV 333
+ Y L G+++V +D + + G E Y V + G+
Sbjct: 54 KLESIKHGYD--GLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGI 106
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 56/211 (26%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG----VKENATF 196
I+ D V + YD+LV+A G + N +
Sbjct: 84 TAINRDRQQVILSDGR-----------ALDYDRLVLATGGRPRPLPVASGAVGKANNFRY 132
Query: 197 LREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256
LR + A+ IRR+L +RL VV+GGG G+E + + I +
Sbjct: 133 LRTLEDAECIRRQL--------------IADNRL---VVIGGGYIGLEVA---ATAIKAN 172
Query: 257 VRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDV 309
+ HVTL++ +L + + ++GV + V G
Sbjct: 173 M-----------HVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMST 221
Query: 310 DSQK---LILNDGTEVPYGLLVWSTGVGPST 337
D QK ++ DGT +P L++ G+ P+
Sbjct: 222 DQQKVTAVLCEDGTRLPADLVIAGIGLIPNC 252
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 6e-07
Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 21/111 (18%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
VVG G GVE G ++ K L E + L SFD +
Sbjct: 171 AVVGAGYIGVELGGVINGL----------GAK----THLFEMFDAPLPSFDPMISETLVE 216
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPST 337
++ G +L +VK+ D + L DG L+W+ G P+
Sbjct: 217 VMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAN 267
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 6e-07
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 23/120 (19%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
++ GGG VEF+ VK TLI EILS FD +R
Sbjct: 174 LIAGGGYIAVEFANIFHGL----------GVK----TTLIYRGKEILSRFDQDMRRGLHA 219
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346
+ + G+R++ + D D +++ E+ ++ + G P+T L L
Sbjct: 220 AMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNT--NGLGLEA 277
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 23/113 (20%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
VVVG G G+E +G + L+ +L FD+ +++ T
Sbjct: 189 VVVGAGYIGIELAGVFHGL----------GSE----THLVIRGETVLRKFDECIQNTITD 234
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKL--ILNDGTEV-PYGLLVWSTGVGPST 337
K G+ + + + K+V++ KL +ND + L+W+ G
Sbjct: 235 HYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL 287
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 22/112 (19%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
+VG G VE + + + N IL FD+ + +
Sbjct: 180 GIVGSGYIAVELINVIKRL----------GID----SYIFARGNRILRKFDESVINVLEN 225
Query: 293 QLSKSGVRL-----VRGIVKDVDSQKLI-LNDGTEV-PYGLLVWSTGVGPST 337
+ K+ + + V I K D I L+DG + +++ G P T
Sbjct: 226 DMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT 277
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 5e-06
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 23/120 (19%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
++G G G+E +G L F + VT++ + +L FD L
Sbjct: 170 AIIGAGYIGIELAGLLRSF----------GSE----VTVVALEDRLLFQFDPLLSATLAE 215
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPSTLVKSLDLPK 346
+ G+ + +D L+ DGT + + ++W+ G P+T + L L
Sbjct: 216 NMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT--RDLGLEA 273
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 40/246 (16%), Positives = 75/246 (30%), Gaps = 66/246 (26%)
Query: 120 IARIQPAISREPGSYFFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKISY 171
+ +Q I ++ D+H + + + E I+
Sbjct: 100 VQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERT--------ITA 151
Query: 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 231
VIA+G I G E ++ L PG
Sbjct: 152 QTFVIAVGGRPRYPDIPGAVEYGITSDDL-------------FSLDREPG---------- 188
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
+VVG G G+E +G L + T++ + +L FD ++
Sbjct: 189 KTLVVGAGYIGLECAGFLKGL----------GYE----PTVMVRSIVLRGFDQQMAELVA 234
Query: 292 TQLSKSGVRLVRG-----IVKDVDSQKLI------LNDGTEVPYGLLVWSTGVGPSTLVK 340
+ + G+ +R + K D + L+ + +E Y ++W+ G
Sbjct: 235 ASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLV--D 292
Query: 341 SLDLPK 346
L+LP
Sbjct: 293 DLNLPN 298
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 33/244 (13%), Positives = 66/244 (27%), Gaps = 70/244 (28%)
Query: 120 IARIQPAISREPGSYFFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKISY 171
+ +Q I Y + H V ++ I+
Sbjct: 198 VEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEV-------QITDKNQKVSTITG 250
Query: 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 231
+K+++A G I G E ++ L PG
Sbjct: 251 NKIILATGERPKYPEIPGAVEYGITSDDL-------------FSLPYFPG---------- 287
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
+V+G +E +G L+ VT++ + +L FD ++
Sbjct: 288 KTLVIGASYVALECAGFLASL----------GGD----VTVMVRSILLRGFDQQMAEKVG 333
Query: 292 TQLSKSGVRLVRG-------------IVKDVDSQKLI---LNDGT--EVPYGLLVWSTGV 333
+ GV+ + + L+ DG E + ++++ G
Sbjct: 334 DYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGR 393
Query: 334 GPST 337
P
Sbjct: 394 EPQL 397
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 8e-05
Identities = 16/152 (10%), Positives = 43/152 (28%), Gaps = 39/152 (25%)
Query: 218 DVPGISEEEKSRLLHC-------------VVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264
+P + E L C +++ ++ +
Sbjct: 121 SIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTL---HMTKLV----------- 166
Query: 265 KDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS-----QKLILNDG 319
++ +I N + L +LS + ++ ++ + +K+ + G
Sbjct: 167 YNWSTDLVIATN------GNELSQTIMDELSNKNIPVITESIRTLQGEGGYLKKVEFHSG 220
Query: 320 TEVPY-GLLVWSTGVGPSTLVKSLDLPKSPGG 350
+ G + T P+ ++ L G
Sbjct: 221 LRIERAGGFIVPTFFRPNQFIEQLGCELQSNG 252
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 38/247 (15%), Positives = 73/247 (29%), Gaps = 66/247 (26%)
Query: 120 IARIQPAISREPGSYFFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKISY 171
+Q + + + D H V +S
Sbjct: 96 AEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTV-------RGVDKGGKATLLSA 148
Query: 172 DKLVIALGAEASTF-GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRL 230
+ +VIA G + G E ++ L + PG
Sbjct: 149 EHIVIATGGRPRYPTQVKGALEYGITSDDI-------------FWLKESPG--------- 186
Query: 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 290
+VVG +E +G L+ + T++ + L FD ++
Sbjct: 187 -KTLVVGASYVALECAGFLTGI----------GLD----TTVMMRSIPLRGFDQQMSSLV 231
Query: 291 TTQLSKSGVRLVRG-----IVKDVDSQ-KLILNDGT-----EVPYGLLVWSTGVGPSTLV 339
T + G + ++G I K +Q ++ D + ++W+ G P T
Sbjct: 232 TEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPET-- 289
Query: 340 KSLDLPK 346
++L+L K
Sbjct: 290 RTLNLEK 296
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 29/119 (24%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
V+VG G VE +G LS K +L+ +++L SFD + T
Sbjct: 191 VIVGAGYIAVEMAGILSAL----------GSK----TSLMIRHDKVLRSFDSMISTNCTE 236
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLILNDGTE---------VPYGLLVWSTGVGPST 337
+L +GV +++ + K + ++ + L+W+ G P+T
Sbjct: 237 ELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT 295
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 35/240 (14%), Positives = 67/240 (27%), Gaps = 66/240 (27%)
Query: 120 IARIQPAISREPGSYFFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKISY 171
I +Q I Y + H + + + S
Sbjct: 122 IEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKI-------YSA 174
Query: 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 231
++ +IA G GI G KE ++ L PG
Sbjct: 175 ERFLIATGERPRYLGIPGDKEYCISSDDL-------------FSLPYCPG---------- 211
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
+VVG +E +G L+ + VT++ + +L FD + +
Sbjct: 212 KTLVVGASYVALECAGFLAGI----------GLD----VTVMVRSILLRGFDQDMANKIG 257
Query: 292 TQLSKSGVRLVRG-----IVKDVDSQKLIL---------NDGTEVPYGLLVWSTGVGPST 337
+ + G++ +R + + L + E Y ++ + G T
Sbjct: 258 EHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT 317
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 20/123 (16%), Positives = 33/123 (26%), Gaps = 17/123 (13%)
Query: 232 HCVVVGGGPTGVEFSGELSD-------------FIMRDVRQRYSHVKDYIHVTLIEANEI 278
++GGG +G + E+S F+ DV R + +
Sbjct: 165 RVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGRE 224
Query: 279 LSSFDDRLRHYATT----QLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334
GV + DGTE + ++W TG
Sbjct: 225 PDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFR 284
Query: 335 PST 337
P+
Sbjct: 285 PAL 287
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 18/142 (12%), Positives = 39/142 (27%), Gaps = 36/142 (25%)
Query: 218 DVPGISEEEKSRLLHC-------------VVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264
++ G+ E S + HC V+ P + + L D+
Sbjct: 116 EIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDW---------GET 166
Query: 265 KDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD-SQKLILNDGTEVP 323
L+ GVR+ ++++ ++L DG +
Sbjct: 167 -----TFFTN-------GIVEPDADQHALLAARGVRVETTRIREIAGHADVVLADGRSIA 214
Query: 324 YGLLVWSTGVGPST-LVKSLDL 344
L + + ++ L
Sbjct: 215 LAGLFTQPKLRITVDWIEKLGC 236
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 9e-04
Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 54/186 (29%)
Query: 169 ISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN---LMLSDVPGISEE 225
+ +D+ ++A GA + I G+KE + L +P
Sbjct: 137 VMFDRCLVATGASPAVPPIPGLKE---------------SPYWTSTEALASDTIPE---- 177
Query: 226 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH--VKDYIHVTLIEANEILSSFD 283
RL V+G +E + Q ++ K VT++ N + D
Sbjct: 178 ---RL---AVIGSSVVALELA------------QAFARLGSK----VTVLARNTLFFRED 215
Query: 284 DRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 338
+ T G+ + + L G LLV +TG P+T
Sbjct: 216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHGELRADKLLV-ATGRTPNT- 273
Query: 339 VKSLDL 344
+SL L
Sbjct: 274 -RSLAL 278
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 351 | |||
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 99.98 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 99.98 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 99.98 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 99.97 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 99.97 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 99.97 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 99.97 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 99.97 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.97 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.97 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 99.97 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 99.97 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 99.97 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 99.97 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 99.97 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 99.96 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 99.96 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 99.96 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 99.96 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 99.96 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 99.96 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 99.96 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 99.96 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 99.96 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 99.96 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 99.96 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 99.96 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 99.96 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 99.96 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 99.96 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 99.96 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.96 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 99.96 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 99.96 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 99.96 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 99.96 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 99.96 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 99.96 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 99.95 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 99.95 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 99.95 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 99.95 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 99.95 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 99.95 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 99.95 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 99.95 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 99.95 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.95 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 99.95 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 99.95 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 99.95 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 99.95 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.95 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 99.95 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 99.95 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 99.95 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.95 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 99.95 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 99.95 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 99.95 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 99.95 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.95 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 99.94 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 99.94 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 99.94 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.94 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 99.94 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.94 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.94 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.93 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 99.93 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.93 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.92 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.92 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.91 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.91 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.91 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.9 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.9 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.9 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.89 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.89 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.29 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.21 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 99.2 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.18 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.13 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 99.08 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.07 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.99 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.98 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.97 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 98.96 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.96 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.95 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.95 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 98.93 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.91 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.9 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.89 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.88 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.88 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.88 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.87 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 98.85 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.83 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 98.83 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.82 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.81 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.8 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.79 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.79 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.79 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.78 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.78 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.78 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.77 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.74 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.73 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.72 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.71 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.66 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.66 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.65 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.65 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.64 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.64 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.64 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 98.63 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.62 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.61 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.61 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.6 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.58 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.56 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.56 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.55 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.55 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.55 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.54 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.54 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 98.54 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.53 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.52 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.52 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.51 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 98.51 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.5 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 98.49 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.48 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.47 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.47 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 98.46 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.46 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.45 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.45 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.45 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.44 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.43 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.42 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.42 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.41 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.41 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.41 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.4 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.39 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.39 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.39 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.38 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.38 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.37 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.37 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.36 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.36 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.36 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.35 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.34 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.34 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 98.33 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 98.31 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.3 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.3 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 98.3 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.29 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 98.29 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.29 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.29 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.29 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 98.28 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.27 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.26 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.26 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 98.25 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.24 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 98.24 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 98.23 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 98.23 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 98.23 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.22 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 98.22 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.21 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 98.21 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 98.2 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 98.19 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.19 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 98.19 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 98.18 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.18 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 98.18 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 98.18 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 98.18 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 98.18 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.18 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.17 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 98.17 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 98.17 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 98.15 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 98.15 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.15 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 98.15 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 98.15 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.14 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.14 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 98.14 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 98.14 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 98.14 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.13 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.13 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 98.13 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.13 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 98.13 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 98.12 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 98.12 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 98.12 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.11 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 98.11 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 98.1 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 98.1 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 98.1 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 98.1 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 98.1 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 98.09 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 98.09 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 98.08 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 98.08 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 98.05 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 98.05 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 98.04 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 98.04 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.03 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 98.02 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 98.02 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.02 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.98 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 97.98 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.96 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.96 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.96 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 97.95 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.95 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.95 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.94 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.94 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.94 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.93 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.92 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 97.92 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 97.91 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 97.91 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 97.91 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.9 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.87 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 97.87 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 97.87 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.87 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 97.86 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.86 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 97.85 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.83 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.81 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 97.81 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.8 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 97.8 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 97.8 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 97.79 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 97.79 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 97.78 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 97.76 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 97.76 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.75 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 97.75 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 97.74 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 97.73 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.73 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 97.73 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 97.72 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 97.72 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.71 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 97.71 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 97.7 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 97.7 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.7 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 97.7 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.68 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 97.67 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 97.66 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 97.65 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 97.65 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 97.64 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.63 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.61 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 97.6 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 97.6 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 97.58 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 97.57 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 97.49 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 97.46 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.42 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.41 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 97.41 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 97.41 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 97.39 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 97.39 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 97.38 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 97.38 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.35 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.34 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.31 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.31 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.25 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 97.22 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 97.2 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 97.2 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 97.17 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 97.17 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 97.1 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 97.04 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 97.02 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.0 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 96.97 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 96.85 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 96.79 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 96.77 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 96.69 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 96.67 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.59 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.53 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.5 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.49 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 96.45 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 96.24 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 96.21 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.11 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 96.03 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 95.99 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 95.94 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 95.94 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.91 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 95.9 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.85 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 95.84 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 95.73 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.66 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 95.65 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 95.62 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.57 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 95.54 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.45 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 95.41 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.38 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 95.35 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 95.27 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 95.23 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.15 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.06 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 94.99 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 94.97 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 94.93 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 94.92 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 94.89 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 94.87 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 94.81 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 94.74 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.72 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 94.7 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 94.68 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 94.65 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 94.64 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 94.57 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 94.56 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 94.54 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 94.54 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 94.52 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 94.51 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 94.51 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 94.42 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 94.4 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 94.39 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 94.3 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 94.24 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 94.21 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 94.21 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 94.2 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 94.18 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 94.18 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 94.17 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 94.17 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 94.09 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 94.08 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 94.06 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 94.05 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 94.04 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 94.04 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 93.98 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 93.98 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 93.97 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 93.93 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 93.91 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 93.89 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 93.83 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 93.79 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 93.79 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 93.79 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 93.77 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 93.77 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 93.75 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 93.75 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 93.71 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 93.68 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 93.65 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 93.6 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 93.57 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 93.57 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 93.55 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 93.54 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 93.51 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 93.44 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 93.41 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 93.41 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 93.35 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 93.33 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 93.32 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 93.32 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 93.3 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 93.23 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 93.23 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 93.22 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 93.17 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 93.16 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 93.16 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 93.1 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 93.05 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 93.03 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 93.03 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 93.01 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 92.98 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 92.97 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 92.89 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 92.89 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 92.89 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 92.87 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 92.87 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 92.86 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 92.85 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 92.84 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 92.77 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 92.76 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 92.76 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 92.73 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 92.72 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 92.7 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.67 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 92.67 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 92.65 | |
| 2we8_A | 386 | Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc | 92.62 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 92.59 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 92.56 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 92.55 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 92.51 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 92.5 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 92.5 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 92.5 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 92.43 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 92.42 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 92.41 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 92.41 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 92.38 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 92.38 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 92.37 |
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-39 Score=308.05 Aligned_cols=289 Identities=35% Similarity=0.650 Sum_probs=236.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
..+++|||||||+||+++|..|++.+++|+|||+++++.|.|+++....|..+......++.+.. .....++.++.++
T Consensus 40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~--~~~~~~v~~~~~~ 117 (502)
T 4g6h_A 40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFA--LKKKGNVTYYEAE 117 (502)
T ss_dssp CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHH--TTCSSCEEEEEEE
T ss_pred CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHH--HhhcCCeEEEEEE
Confidence 34579999999999999999999999999999999999999999998888877776655555442 2344578999999
Q ss_pred eeeEeCCCCEEEEEeecC---------ccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHH
Q 018704 140 CAGIDTDNHVVHCETVTD---------ELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKL 210 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~---------~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~ 210 (351)
|++||++.+.+.+..... .......+..++.||+||||||+.|+++++||++++++.++++.++..+++.+
T Consensus 118 v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l 197 (502)
T 4g6h_A 118 ATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTF 197 (502)
T ss_dssp EEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHH
T ss_pred EEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHHH
Confidence 999999999998764211 00001112348999999999999999999999989999999999999999998
Q ss_pred HHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHH
Q 018704 211 LLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHY 289 (351)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~ 289 (351)
..++.....+....+++...++++|||||++|+|+|.+|.+++...+...|+......+|+++++. .+++.+++++.+.
T Consensus 198 ~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~ 277 (502)
T 4g6h_A 198 AANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSY 277 (502)
T ss_dssp HHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHH
T ss_pred HHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHH
Confidence 777766665554445666678999999999999999999999887777777776677899999997 5889999999999
Q ss_pred HHHHhhhcCcEEEcCe-EEEEeCCeEEe----cCCc----EEeccEEEEecCCCCcccc----ccCCCCCCCCC
Q 018704 290 ATTQLSKSGVRLVRGI-VKDVDSQKLIL----NDGT----EVPYGLLVWSTGVGPSTLV----KSLDLPKSPGG 350 (351)
Q Consensus 290 ~~~~l~~~gV~~~~~~-v~~v~~~~v~~----~~g~----~~~~D~vi~a~G~~p~~~~----~~~gl~~~~~G 350 (351)
+.+.|++.||+++++. |++++++++.+ .||+ ++++|.||||+|.+|++++ ..++++.+++|
T Consensus 278 ~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g 351 (502)
T 4g6h_A 278 AQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKR 351 (502)
T ss_dssp HHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCS
T ss_pred HHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCC
Confidence 9999999999999995 99999987765 3553 5999999999999998544 34455555544
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=270.18 Aligned_cols=250 Identities=19% Similarity=0.283 Sum_probs=200.1
Q ss_pred CcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCccccc-hhhhhhhcccccccccccchhccchhhhcCCCeEEEE-E
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (351)
++||||||||||++||.+|++.| .+|+|||+++.+.|. +.++....+...... ..+......+....++.++. .
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~ 78 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRR--YALAYTPEKFYDRKQITVKTYH 78 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGG--GTBCCCHHHHHHHHCCEEEETE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchh--hhhhcCHHHHHHhcCCEEEeCC
Confidence 47999999999999999999977 569999999887765 334433322222111 11111111223334566544 5
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
+|+.+|.+.+.+.+.....++ ..++.||+||||||+.|+.|++|| +..+..+++.++..+++.+..
T Consensus 79 ~V~~id~~~~~~~~~~~~~~~------~~~~~yd~lVIATGs~p~~p~i~g--~~~~~~~~~~~~~~l~~~~~~------ 144 (437)
T 4eqs_A 79 EVIAINDERQTVSVLNRKTNE------QFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA------ 144 (437)
T ss_dssp EEEEEETTTTEEEEEETTTTE------EEEEECSEEEECCCEEECCCCCCC--TTEECCSSHHHHHHHHHHHHH------
T ss_pred eEEEEEccCcEEEEEeccCCc------eEEEEcCEEEECCCCccccccccC--ceEEeeccHHHHHHHHHhhhc------
Confidence 899999999998876544333 347999999999999999999998 566778888888888776532
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhc
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 297 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~ 297 (351)
...++++|||||++|+|+|..+.+++ .+|+++++. ++++.+++++.+.+.+.+++.
T Consensus 145 ---------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~ 201 (437)
T 4eqs_A 145 ---------NQVDKVLVVGAGYVSLEVLENLYERG--------------LHPTLIHRSDKINKLMDADMNQPILDELDKR 201 (437)
T ss_dssp ---------HTCCEEEEECCSHHHHHHHHHHHHHT--------------CEEEEEESSSCCSTTSCGGGGHHHHHHHHHT
T ss_pred ---------cCCcEEEEECCccchhhhHHHHHhcC--------------CcceeeeeeccccccccchhHHHHHHHhhcc
Confidence 33469999999999999999999988 899999997 578889999999999999999
Q ss_pred CcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCCC
Q 018704 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGR 351 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G~ 351 (351)
||+++.+. |++++++.+.+++|+++++|.|++|+|++|+ ++++..|+++|++|.
T Consensus 202 gV~i~~~~~v~~~~~~~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~ 257 (437)
T 4eqs_A 202 EIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGF 257 (437)
T ss_dssp TCCEEESCCEEEEETTEEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSC
T ss_pred ceEEEeccEEEEecCCeeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCc
Confidence 99999995 9999999999999999999999999999999 899999999988773
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=260.66 Aligned_cols=235 Identities=24% Similarity=0.392 Sum_probs=190.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc-hhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-E
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (351)
..||+|||||+||++||..|++.| +|+|||+++...|. +.+.....+...+..+..... .+....++.++.. +
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~----~~~~~~~v~~~~g~~ 82 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSL----DWYRKRGIEIRLAEE 82 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCH----HHHHHHTEEEECSCC
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCH----HHHHhCCcEEEECCE
Confidence 369999999999999999999999 99999999876553 445444434333332222211 1223347787776 6
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDV 219 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (351)
|+.+++..+.+. .++. ++.||+||||||+.|+.|++||. ++++++++..++..+++.+.
T Consensus 83 v~~id~~~~~V~----~~g~--------~~~~d~lViATGs~p~~p~i~G~-~~v~~~~~~~~~~~l~~~~~-------- 141 (367)
T 1xhc_A 83 AKLIDRGRKVVI----TEKG--------EVPYDTLVLATGARAREPQIKGK-EYLLTLRTIFDADRIKESIE-------- 141 (367)
T ss_dssp EEEEETTTTEEE----ESSC--------EEECSEEEECCCEEECCCCSBTG-GGEECCCSHHHHHHHHHHHH--------
T ss_pred EEEEECCCCEEE----ECCc--------EEECCEEEECCCCCCCCCCCCCc-CCEEEEcCHHHHHHHHHHhh--------
Confidence 999999887765 2455 89999999999999999999994 67778888888888776542
Q ss_pred CCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcC
Q 018704 220 PGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSG 298 (351)
Q Consensus 220 p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~g 298 (351)
..++++|||||.+|+|+|..|.+++ .+|+++++. .+++ +++++.+.+.+.+++.|
T Consensus 142 ---------~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~g 197 (367)
T 1xhc_A 142 ---------NSGEAIIIGGGFIGLELAGNLAEAG--------------YHVKLIHRGAMFLG-LDEELSNMIKDMLEETG 197 (367)
T ss_dssp ---------HHSEEEEEECSHHHHHHHHHHHHTT--------------CEEEEECSSSCCTT-CCHHHHHHHHHHHHHTT
T ss_pred ---------cCCcEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeCCCeecc-CCHHHHHHHHHHHHHCC
Confidence 2359999999999999999999887 899999997 4667 99999999999999999
Q ss_pred cEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 299 VRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 299 V~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
|+++++. |++++.+++++++|+ +++|.||+|+|++|+ ++++.+|++.+
T Consensus 198 V~i~~~~~v~~i~~~~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~ 247 (367)
T 1xhc_A 198 VKFFLNSELLEANEEGVLTNSGF-IEGKVKICAIGIVPNVDLARRSGIHTG 247 (367)
T ss_dssp EEEECSCCEEEECSSEEEETTEE-EECSCEEEECCEEECCHHHHHTTCCBS
T ss_pred CEEEcCCEEEEEEeeEEEECCCE-EEcCEEEECcCCCcCHHHHHhCCCCCC
Confidence 9999995 999988889999988 999999999999999 78888888764
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=262.96 Aligned_cols=238 Identities=21% Similarity=0.355 Sum_probs=194.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCce--EEEEcCCCccccc-hhh-hhhhcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHMVFT-PLL-ASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~--v~vie~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
++|+|||||+||++||..|++.|++ |+|||+++.+.|. +.+ .....+......+ ... ..+....++.++..
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~-~~~----~~~~~~~~i~~~~~ 77 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPI-LAE----ADWYGEARIDMLTG 77 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCB-SSC----TTHHHHTTCEEEES
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHh-cCC----HHHHHHCCCEEEeC
Confidence 5899999999999999999999987 9999999988775 333 2233333333322 111 11223347888777
Q ss_pred -EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhc
Q 018704 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 139 -~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
+|+.++...+.+.+ .++. .+.||+||+|||+.|+.|++||.+ ++++++++..++..+++.+
T Consensus 78 ~~v~~id~~~~~v~~---~~g~--------~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~~------ 140 (410)
T 3ef6_A 78 PEVTALDVQTRTISL---DDGT--------TLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSW------ 140 (410)
T ss_dssp CCEEEEETTTTEEEE---TTSC--------EEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHHHHHHC------
T ss_pred CEEEEEECCCCEEEE---CCCC--------EEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHHHHHHh------
Confidence 99999999998876 4565 899999999999999999999986 5677788888888877653
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHHHHh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQL 294 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~l 294 (351)
...++++|||+|.+|+|+|..+.+++ .+|+++++.+ +++ .+++.+.+.+.+.+
T Consensus 141 -----------~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l 195 (410)
T 3ef6_A 141 -----------TSATRLLIVGGGLIGCEVATTARKLG--------------LSVTILEAGDELLVRVLGRRIGAWLRGLL 195 (410)
T ss_dssp -----------CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSHHHHCHHHHHHHHHHH
T ss_pred -----------ccCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCccchhhcCHHHHHHHHHHH
Confidence 34569999999999999999999877 8999999974 443 37888999999999
Q ss_pred hhcCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 295 SKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 295 ~~~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
++.||+++++. |++++.+ +|+++||++++||.||+|+|++|+ ++++.+|++++
T Consensus 196 ~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~ 254 (410)
T 3ef6_A 196 TELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACD 254 (410)
T ss_dssp HHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBS
T ss_pred HHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCccC
Confidence 99999999995 9999865 689999999999999999999999 79999888875
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=263.80 Aligned_cols=231 Identities=18% Similarity=0.280 Sum_probs=190.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcccc-chhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF-TPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS- 138 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (351)
+.++|+|||||+||++||..|++.+.+|+|||+++++.| .+.++....+......+.....+ +....++.++..
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~----~~~~~~i~~~~~~ 83 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKND----WYEKNNIKVITSE 83 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHH----HHHHTTCEEECSC
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHH----HHHHCCCEEEeCC
Confidence 457999999999999999999889999999999998876 56666655554443333222222 223347777654
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
+|+.+|++.+.+.+ .+++ ++.||+||||||+.|+.|++||.+ +++++++.+++..+++.+.
T Consensus 84 ~V~~id~~~~~v~~---~~g~--------~~~yd~lvlAtG~~p~~p~i~G~~-~v~~~~~~~d~~~l~~~l~------- 144 (385)
T 3klj_A 84 FATSIDPNNKLVTL---KSGE--------KIKYEKLIIASGSIANKIKVPHAD-EIFSLYSYDDALKIKDECK------- 144 (385)
T ss_dssp CEEEEETTTTEEEE---TTSC--------EEECSEEEECCCEEECCCCCTTCS-CEECCSSHHHHHHHHHHHH-------
T ss_pred EEEEEECCCCEEEE---CCCC--------EEECCEEEEecCCCcCCCCCCCCC-CeEEeCCHHHHHHHHHHhh-------
Confidence 89999999998876 4566 899999999999999999999986 7888899999988887652
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCC-CcHHHHHHHHHHhhh
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS-FDDRLRHYATTQLSK 296 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~-~~~~~~~~~~~~l~~ 296 (351)
.+++++|||||.+|+|+|..|.+.+ .+|+++++.+ +++. +++.+.+.+.+.+++
T Consensus 145 ----------~~~~vvVIGgG~~g~E~A~~l~~~g--------------~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~ 200 (385)
T 3klj_A 145 ----------NKGKAFIIGGGILGIELAQAIIDSG--------------TPASIGIILEYPLERQLDRDGGLFLKDKLDR 200 (385)
T ss_dssp ----------HHSCEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSSSSCTTTSCHHHHHHHHHHHHT
T ss_pred ----------cCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEcCCccchhhcCHHHHHHHHHHHHh
Confidence 3469999999999999999999887 8999999974 5554 899999999999999
Q ss_pred cCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
.||+++.+. |+++ |+++++|.||+|+|++|+ ++++.+|++.+
T Consensus 201 ~gV~~~~~~~v~~i---------g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~ 244 (385)
T 3klj_A 201 LGIKIYTNSNFEEM---------GDLIRSSCVITAVGVKPNLDFIKDTEIASK 244 (385)
T ss_dssp TTCEEECSCCGGGC---------HHHHHHSEEEECCCEEECCGGGTTSCCCBS
T ss_pred CCCEEEeCCEEEEc---------CeEEecCeEEECcCcccChhhhhhcCCCcC
Confidence 999999994 7665 678999999999999999 89999888765
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=258.01 Aligned_cols=241 Identities=21% Similarity=0.369 Sum_probs=194.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCce--EEEEcCCCccccc-hhhh-hhhcccccccccccchhccchhhhcCCCeEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHMVFT-PLLA-STCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~--v~vie~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (351)
+++||||||||+||++||..|++.|++ |+|||+++...|. +.+. ....+......+.. ....+....++.++
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~ 83 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICI----RPAQFWEDKAVEMK 83 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBS----SCHHHHHHTTEEEE
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhcc----CCHHHHHHCCcEEE
Confidence 457999999999999999999999987 9999999987765 2222 22222222222211 11222334578887
Q ss_pred EE-EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhh
Q 018704 137 LS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNL 214 (351)
Q Consensus 137 ~~-~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (351)
.. +|+.++...+.+.+ .++. .+.||+||+|||+.|+.|++||.+ +.++++++..++..+...+.
T Consensus 84 ~~~~v~~id~~~~~v~~---~~g~--------~~~~d~lvlAtG~~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~--- 149 (415)
T 3lxd_A 84 LGAEVVSLDPAAHTVKL---GDGS--------AIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELD--- 149 (415)
T ss_dssp ETCCEEEEETTTTEEEE---TTSC--------EEEEEEEEECCCEECCCCBTTSSCCBTEECCCSHHHHHHHHHHHH---
T ss_pred eCCEEEEEECCCCEEEE---CCCC--------EEEeeEEEEccCCccCCCCCCCccccCEEEEcCHHHHHHHHHHhh---
Confidence 76 89999999998876 4565 899999999999999999999986 56777888888888877652
Q ss_pred hccCCCCCCHhhhcc-cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHH
Q 018704 215 MLSDVPGISEEEKSR-LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYAT 291 (351)
Q Consensus 215 ~~~~~p~~~~~~~~~-~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~ 291 (351)
. .++++|||+|.+|+|+|..+.+++ .+|+++++.+ +++ .+++.+.+.+.
T Consensus 150 --------------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtvv~~~~~~l~~~~~~~~~~~l~ 201 (415)
T 3lxd_A 150 --------------AGAKNAVVIGGGYIGLEAAAVLTKFG--------------VNVTLLEALPRVLARVAGEALSEFYQ 201 (415)
T ss_dssp --------------TTCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTSCHHHHHHHH
T ss_pred --------------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecCCchhhhhcCHHHHHHHH
Confidence 2 569999999999999999999877 8999999974 444 47899999999
Q ss_pred HHhhhcCcEEEcCe-EEEEeCC-----eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 292 TQLSKSGVRLVRGI-VKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 292 ~~l~~~gV~~~~~~-v~~v~~~-----~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
+.+++.||+++++. |++++.+ +|.+.+|++++||.||+|+|++|+ ++++.+|++.+
T Consensus 202 ~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~ 264 (415)
T 3lxd_A 202 AEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGG 264 (415)
T ss_dssp HHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHTTCCCS
T ss_pred HHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhCCCCcC
Confidence 99999999999995 9988753 588899999999999999999999 78888888765
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=256.19 Aligned_cols=239 Identities=20% Similarity=0.400 Sum_probs=192.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCccccc-hhhh-hhhcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLLA-STCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
++|+|||||+||++||..|++.|+ +|+|||+++.+.|. +.+. ....+......+.... .......++.++..
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~----~~~~~~~~i~~~~~ 77 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRP----EKFFQDQAIELISD 77 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSC----HHHHHHTTEEEECC
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCC----HHHHHhCCCEEEEE
Confidence 689999999999999999999998 89999999987764 3222 2332322222221111 12233357777779
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
+|+.++.+.+.+.+ .++. .+.||+||+|||+.|+.|++||.+ +++++.++..++..+...+
T Consensus 78 ~v~~id~~~~~v~~---~~g~--------~~~~d~lvlAtG~~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~~------- 139 (404)
T 3fg2_P 78 RMVSIDREGRKLLL---ASGT--------AIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRM------- 139 (404)
T ss_dssp CEEEEETTTTEEEE---SSSC--------EEECSEEEECCCEEECCCCSTTTTSTTEECCSSHHHHHHHHHHG-------
T ss_pred EEEEEECCCCEEEE---CCCC--------EEECCEEEEeeCCCccCCCCCCCCCCcEEEECCHHHHHHHHHHh-------
Confidence 99999999998866 4555 899999999999999999999976 5677788888888877654
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHHHHhh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQLS 295 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~l~ 295 (351)
...++++|||+|.+|+|+|..+.+.+ .+|+++++.+ +++ .+++.+.+.+.+.++
T Consensus 140 ----------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~ 195 (404)
T 3fg2_P 140 ----------PDKKHVVVIGAGFIGLEFAATARAKG--------------LEVDVVELAPRVMARVVTPEISSYFHDRHS 195 (404)
T ss_dssp ----------GGCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSTTTTTSCHHHHHHHHHHHH
T ss_pred ----------hcCCeEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeCCCcchhhccCHHHHHHHHHHHH
Confidence 34579999999999999999999877 8999999974 444 478999999999999
Q ss_pred hcCcEEEcCe-EEEEeCC-----eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 296 KSGVRLVRGI-VKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~~-----~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
+.||+++++. |++++.+ +|.+.+|++++||.||+|+|++|+ ++++.+|++++
T Consensus 196 ~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~ 254 (404)
T 3fg2_P 196 GAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTA 254 (404)
T ss_dssp HTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS
T ss_pred hCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCCC
Confidence 9999999994 9988753 588899999999999999999999 79998888775
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-32 Score=264.98 Aligned_cols=254 Identities=22% Similarity=0.338 Sum_probs=202.3
Q ss_pred CCCCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCccccchh-hhhhhcccccccccccchhccchhhhcCCCeEE-
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYF- 135 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 135 (351)
++++||+|||||+|||+||..|++. |++|+|||+++...|.+. ++....+..... ...+......+....++.+
T Consensus 34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~--~~~~~~~~~~~~~~~gi~v~ 111 (588)
T 3ics_A 34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITER--QKLLVQTVERMSKRFNLDIR 111 (588)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCG--GGGBSSCHHHHHHHTTCEEE
T ss_pred ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCCh--HHhhccCHHHHHHhcCcEEE
Confidence 4458999999999999999999997 899999999998877642 333232222111 1112222333343446666
Q ss_pred EEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCc-c-ccccccCCHHHHHHHHHHHHHh
Q 018704 136 FLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-K-ENATFLREVHHAQEIRRKLLLN 213 (351)
Q Consensus 136 ~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~-~-~~~~~~~~~~~~~~~~~~~~~~ 213 (351)
+..+|+.++.+.+.+.+....++. ...+.||+||+|||+.|+.|++||. + +.+++.+++.+...+...+..
T Consensus 112 ~~~~V~~id~~~~~v~v~~~~~g~------~~~~~~d~lviAtG~~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~- 184 (588)
T 3ics_A 112 VLSEVVKINKEEKTITIKNVTTNE------TYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDE- 184 (588)
T ss_dssp CSEEEEEEETTTTEEEEEETTTCC------EEEEECSEEEECCCEEECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHH-
T ss_pred ECCEEEEEECCCCEEEEeecCCCC------EEEEeCCEEEECCCCCCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhh-
Confidence 457999999999999886544443 2378999999999999999999998 3 567778888888877766521
Q ss_pred hhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHH
Q 018704 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATT 292 (351)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~ 292 (351)
...++++|||||.+|+|+|..+.+++ .+|+++++. .+++.+++++.+.+.+
T Consensus 185 --------------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~ 236 (588)
T 3ics_A 185 --------------KKPRHATVIGGGFIGVEMVENLRERG--------------IEVTLVEMANQVMPPIDYEMAAYVHE 236 (588)
T ss_dssp --------------HCCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCTTSCHHHHHHHHH
T ss_pred --------------cCCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCcccccCCHHHHHHHHH
Confidence 23469999999999999999999887 899999997 5778899999999999
Q ss_pred HhhhcCcEEEcCe-EEEEeC--CeEEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 293 QLSKSGVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 293 ~l~~~gV~~~~~~-v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.+++.||+++.+. |++++. +++.+.+|+++++|.||+|+|++|+ ++++.+|++++++|
T Consensus 237 ~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g 298 (588)
T 3ics_A 237 HMKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRG 298 (588)
T ss_dssp HHHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGG
T ss_pred HHHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCC
Confidence 9999999999995 999976 6899999999999999999999999 78888898887655
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=256.45 Aligned_cols=237 Identities=24% Similarity=0.368 Sum_probs=188.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCce--EEEEcCCCccccc-hhhh-hhhcccccccccccchhccchhhhcCCCeEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHMVFT-PLLA-STCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~--v~vie~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (351)
+++||+|||||++|+++|..|++.|.+ |+|||+++...|. +.+. ....+.. ...+ .+. .....++.++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~-----~~~~~~v~~~ 77 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGD-AEKI--RLD-----CKRAPEVEWL 77 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCC-GGGS--BCC-----CTTSCSCEEE
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCc-hhhh--hHH-----HHHHCCCEEE
Confidence 457999999999999999999999885 9999999876654 2222 1221211 1111 011 2234577877
Q ss_pred EE-EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC-CCccccccccCCHHHHHHHHHHHHHhh
Q 018704 137 LS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI-HGVKENATFLREVHHAQEIRRKLLLNL 214 (351)
Q Consensus 137 ~~-~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (351)
.. +|+.++.+.+.+.+ .++. .+.||+||+|||+.|+.|++ ||.+++++++++.+++..+.+.+
T Consensus 78 ~~~~v~~i~~~~~~v~~---~~g~--------~~~~d~lviAtG~~~~~~~i~~G~~~~v~~~~~~~~~~~l~~~~---- 142 (408)
T 2gqw_A 78 LGVTAQSFDPQAHTVAL---SDGR--------TLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGL---- 142 (408)
T ss_dssp ETCCEEEEETTTTEEEE---TTSC--------EEECSEEEECCCEEECCCGGGTTCSSCEEECCSHHHHHHHHTTC----
T ss_pred cCCEEEEEECCCCEEEE---CCCC--------EEECCEEEECCCCCCCCCCccCCCCCcEEEECCHHHHHHHHHHh----
Confidence 76 59999998888765 3555 89999999999999999999 99865667778888877765532
Q ss_pred hccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHHH
Q 018704 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATT 292 (351)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~ 292 (351)
...++++|||||.+|+|+|..|.+++ .+|+++++.+ +++ .+++++.+.+.+
T Consensus 143 -------------~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~ 195 (408)
T 2gqw_A 143 -------------RPQSRLLIVGGGVIGLELAATARTAG--------------VHVSLVETQPRLMSRAAPATLADFVAR 195 (408)
T ss_dssp -------------CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTTSCHHHHHHHHH
T ss_pred -------------hcCCeEEEECCCHHHHHHHHHHHhCC--------------CEEEEEEeCCcccccccCHHHHHHHHH
Confidence 23469999999999999999999877 8999999974 565 488999999999
Q ss_pred HhhhcCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 293 QLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 293 ~l~~~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
.+++.||+++.+. |++++++.|++.+|+++++|.||+|+|++|+ ++++.+|++++
T Consensus 196 ~l~~~GV~i~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~ 252 (408)
T 2gqw_A 196 YHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACD 252 (408)
T ss_dssp HHHHTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSCEEECCHHHHHHTCCBS
T ss_pred HHHHcCcEEEeCCEEEEEECCEEEECCCCEEEcCEEEECcCCCccHHHHHhCCCCCC
Confidence 9999999999994 9999855889999999999999999999999 78888887764
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=260.09 Aligned_cols=254 Identities=22% Similarity=0.321 Sum_probs=182.5
Q ss_pred CCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCccccchh-hhhhhcccccc-ccc---ccchhccchhhhcCCCeE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEF-RSV---AEPIARIQPAISREPGSY 134 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~~~~-~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~ 134 (351)
++||+|||||++||+||..|++. |++|+|||+++.+.|.+. ++....+.... ..+ ...+......+....++.
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 82 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE 82 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence 47999999999999999999997 999999999998776532 22222222111 111 000222223333344666
Q ss_pred E-EEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHH
Q 018704 135 F-FLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLL 212 (351)
Q Consensus 135 ~-~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~ 212 (351)
+ ...+|+.++.+.+.+.+....++. ...+.||+||+|||+.|..|++||.+ +.++++.+..++..+.+.+.
T Consensus 83 ~~~~~~V~~id~~~~~v~~~~~~~g~------~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~- 155 (472)
T 3iwa_A 83 ALVETRAHAIDRAAHTVEIENLRTGE------RRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAIS- 155 (472)
T ss_dssp EECSEEEEEEETTTTEEEEEETTTCC------EEEEECSEEEECCCEEECCCSCTTTTSBTEEECCSHHHHHHHHHHCC-
T ss_pred EEECCEEEEEECCCCEEEEeecCCCC------EEEEECCEEEEeCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhh-
Confidence 5 457999999999999886543343 23789999999999999999999985 56677788888777665431
Q ss_pred hhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHH-HHHHHHhhhcCCCCccEEEEEeCC-CCCC-CCcHHHHHH
Q 018704 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHY 289 (351)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~l~-~~~~~~~~~ 289 (351)
....++++|||+|.+|+|+|..+.++ + .+|+++++. .+++ .+++++.+.
T Consensus 156 --------------~~~~~~vvViGgG~~g~e~A~~l~~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~ 207 (472)
T 3iwa_A 156 --------------AGEVSKAVIVGGGFIGLEMAVSLADMWG--------------IDTTVVELADQIMPGFTSKSLSQM 207 (472)
T ss_dssp --------------TTSCSEEEEECCSHHHHHHHHHHHHHHC--------------CEEEEECSSSSSSTTTSCHHHHHH
T ss_pred --------------cCCCCEEEEECCCHHHHHHHHHHHHhcC--------------CcEEEEEccCcccccccCHHHHHH
Confidence 01246999999999999999999987 6 899999997 4677 889999999
Q ss_pred HHHHhhhcCcEEEcC-eEEEEeC-C-e--EEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 290 ATTQLSKSGVRLVRG-IVKDVDS-Q-K--LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 290 ~~~~l~~~gV~~~~~-~v~~v~~-~-~--v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
+.+.+++.||+++.+ +|++++. + + +.+.+|+++++|.||+|+|++|+ ++++.+|++++++|
T Consensus 208 l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g 274 (472)
T 3iwa_A 208 LRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRG 274 (472)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTC
T ss_pred HHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCC
Confidence 999999999999999 4998875 2 2 67788999999999999999999 78888899888766
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=262.85 Aligned_cols=251 Identities=21% Similarity=0.329 Sum_probs=197.0
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCccccchh-hhhhhcccccccccccchhccchhhhcCCCeEEE-EE
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LS 138 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 138 (351)
+||+|||||+|||+||..|++. +++|+|||+++.+.|.+. ++....+.... ....+.+....+....++.++ ..
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~ 79 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQ--RSALVLQTPESFKARFNVEVRVKH 79 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCC--GGGGBCCCHHHHHHHHCCEEETTE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCC--hHHhhccCHHHHHHhcCcEEEECC
Confidence 6899999999999999999987 889999999998877642 33222222211 111122222333333466664 57
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
+|+.++.+.+.+.+....++. ...+.||+||||||+.|+.|++||.+ ..+++.+++.++..+.+.+..
T Consensus 80 ~V~~id~~~~~v~~~~~~~g~------~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~----- 148 (565)
T 3ntd_A 80 EVVAIDRAAKLVTVRRLLDGS------EYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQM----- 148 (565)
T ss_dssp EEEEEETTTTEEEEEETTTCC------EEEEECSEEEECCCEEECCCCCTTCCSTTEECCSSHHHHHHHHHHHHH-----
T ss_pred EEEEEECCCCEEEEEecCCCC------eEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhh-----
Confidence 999999999999887544343 23789999999999999999999985 566778888888777765421
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSK 296 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~ 296 (351)
...++++|||||++|+|+|..|.+++ .+|+++++. .+++.+++++.+.+.+.+++
T Consensus 149 ----------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 204 (565)
T 3ntd_A 149 ----------NNVEHATVVGGGFIGLEMMESLHHLG--------------IKTTLLELADQVMTPVDREMAGFAHQAIRD 204 (565)
T ss_dssp ----------TTCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSCTTSCHHHHHHHHHHHHH
T ss_pred ----------CCCCEEEEECCCHHHHHHHHHHHhcC--------------CcEEEEEcCCccchhcCHHHHHHHHHHHHH
Confidence 33469999999999999999999887 899999997 57788899999999999999
Q ss_pred cCcEEEcCe-EEEEeC---------------------C--eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 297 SGVRLVRGI-VKDVDS---------------------Q--KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~---------------------~--~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.||+++.+. |++++. + .+++.+|+++++|.||+|+|++|+ ++++.+|++++++|
T Consensus 205 ~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g 283 (565)
T 3ntd_A 205 QGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELG 283 (565)
T ss_dssp TTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTS
T ss_pred CCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCC
Confidence 999999994 888864 2 466788999999999999999999 78888888887766
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=250.69 Aligned_cols=252 Identities=21% Similarity=0.334 Sum_probs=192.2
Q ss_pred CCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCccccchh-hhhhhcccccccccccchhccchhhhcCCCeEEEE-
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL- 137 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (351)
++||+|||||++|+++|..|++. |.+|+|||+++...|.+. ++....+... .+..........+....++.++.
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~gv~~~~~ 113 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIA--STEKLIARNVKTFRDKYGIDAKVR 113 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSS--CGGGGBSSCHHHHHHTTCCEEESS
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcC--CHHHhhhcCHHHHHhhcCCEEEeC
Confidence 46999999999999999999986 899999999987765532 2222222111 11111222223343445777765
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhc
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
..|+.++.+.+.+.+....+++ ..++.||+||||||+.|+.|++||.+ +.++++.+.+++..+.+.+..
T Consensus 114 ~~v~~i~~~~~~v~v~~~~~g~------~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~---- 183 (480)
T 3cgb_A 114 HEVTKVDTEKKIVYAEHTKTKD------VFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLET---- 183 (480)
T ss_dssp EEEEEEETTTTEEEEEETTTCC------EEEEECSEEEECCCEEECCCCCBTTTSBTEECCSSHHHHHHHHHHHHS----
T ss_pred CEEEEEECCCCEEEEEEcCCCc------eEEEEcCEEEECCCCcccCCCCCCccCCCEEEeCCHHHHHHHHHHhhh----
Confidence 6899999999988876422332 13689999999999999999999986 457777888888877765420
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLS 295 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~ 295 (351)
...++++|||||++|+|+|..|.+++ .+|+++++. .+++.+++++.+.+.+.++
T Consensus 184 -----------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~ 238 (480)
T 3cgb_A 184 -----------NKVEDVTIIGGGAIGLEMAETFVELG--------------KKVRMIERNDHIGTIYDGDMAEYIYKEAD 238 (480)
T ss_dssp -----------SCCCEEEEECCHHHHHHHHHHHHHTT--------------CEEEEECCGGGTTSSSCHHHHHHHHHHHH
T ss_pred -----------cCCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEEeCCchhhcCCHHHHHHHHHHHH
Confidence 13469999999999999999999877 899999997 4777889999999999999
Q ss_pred hcCcEEEcCe-EEEEeCC-eE--EecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 296 KSGVRLVRGI-VKDVDSQ-KL--ILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~~-~v--~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
+.||+++.+. |++++.+ ++ ...++.++++|.||+|+|++|+ ++++.+|++++++|
T Consensus 239 ~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G 298 (480)
T 3cgb_A 239 KHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKG 298 (480)
T ss_dssp HTTCEEECSCCEEEEEESSBEEEEEETTEEEECSEEEECSCEEESCGGGTTSCCCBCTTS
T ss_pred HcCcEEEcCCEEEEEEcCCcEEEEEECCCEEEcCEEEECcCCCcChHHHHhCCcccCCCC
Confidence 9999999995 9888754 22 2234568999999999999999 79998898887665
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-31 Score=253.13 Aligned_cols=246 Identities=22% Similarity=0.297 Sum_probs=182.6
Q ss_pred CCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCccccchh-hhhhhcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
++||+|||||+|||++|..|++. +++|+|||+++.+.+.+. ++....+..... .........+....++.++..
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~~gi~v~~~ 79 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPD---KLMYYPPEVFIKKRGIDLHLN 79 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC---------------------------CTHHHHTTCEEETT
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHH---HhhhcCHHHHHHhcCcEEEec
Confidence 47999999999999999999997 889999999987765542 222211111111 111112222333456777765
Q ss_pred -EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhc
Q 018704 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 139 -~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
+|+.++...+.+.. .++. ..+.||+||+|||+.|+.|++||.+ +.+++.++..++..+.+.+.
T Consensus 80 ~~v~~i~~~~~~v~~---~~g~-------~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~----- 144 (449)
T 3kd9_A 80 AEVIEVDTGYVRVRE---NGGE-------KSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYME----- 144 (449)
T ss_dssp CEEEEECSSEEEEEC---SSSE-------EEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHHHHHHHHHS-----
T ss_pred CEEEEEecCCCEEEE---CCce-------EEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHH-----
Confidence 88888877655532 2331 2799999999999999999999986 45677777778777766531
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCC-CcHHHHHHHHHHh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQL 294 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~-~~~~~~~~~~~~l 294 (351)
....++++|||||.+|+|+|..|.+++ .+|+++++. ++++. +++++.+.+.+.+
T Consensus 145 ----------~~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l 200 (449)
T 3kd9_A 145 ----------KYKVENVVIIGGGYIGIEMAEAFAAQG--------------KNVTMIVRGERVLRRSFDKEVTDILEEKL 200 (449)
T ss_dssp ----------SSCCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTSCHHHHHHHHHHH
T ss_pred ----------hcCCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEcCCccchhhcCHHHHHHHHHHH
Confidence 014569999999999999999999887 899999997 46776 8999999999999
Q ss_pred hhcCcEEEcCe-EEEEeCCe---EEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 295 SKSGVRLVRGI-VKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 295 ~~~gV~~~~~~-v~~v~~~~---v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
++. |+++.+. |.+++.+. ..+.+|.++++|.||+|+|++|+ ++++.+|++++++|
T Consensus 201 ~~~-v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G 260 (449)
T 3kd9_A 201 KKH-VNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIKPNIELAKQLGVRIGETG 260 (449)
T ss_dssp TTT-SEEEESCCEEEEECSSSCCEEEETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTS
T ss_pred HhC-cEEEeCCeEEEEeccCcEEEEEeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCC
Confidence 999 9999995 99987642 34567889999999999999999 88898999888776
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=246.86 Aligned_cols=246 Identities=19% Similarity=0.303 Sum_probs=187.5
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCccccchh-hhhhhcccc---cccccccchhccchhhhcCCCeEE-
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTL---EFRSVAEPIARIQPAISREPGSYF- 135 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~- 135 (351)
+||+|||||++|+++|..|++. |.+|+|||+++...|.+. +.....+.. .+..+... ... .....++.+
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~-~~~~~gv~~~ 76 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYS---SPE-ELSNLGANVQ 76 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSC---CHH-HHHHTTCEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhc---CHH-HHHHcCCEEE
Confidence 5899999999999999999997 999999999987655432 221222221 12211111 111 222346666
Q ss_pred EEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhh
Q 018704 136 FLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNL 214 (351)
Q Consensus 136 ~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (351)
...+|..++.+.+.+.+.+..+++ ...+.||+||+|||+.|+.|++||.+ +.+++++++.+...+.+..
T Consensus 77 ~~~~v~~i~~~~~~v~v~~~~~g~------~~~~~~d~lviAtGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~---- 146 (452)
T 2cdu_A 77 MRHQVTNVDPETKTIKVKDLITNE------EKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEA---- 146 (452)
T ss_dssp ESEEEEEEEGGGTEEEEEETTTCC------EEEEECSEEEECCCEEECCCCCTTTTSTTEEECSSHHHHHHHHHHG----
T ss_pred eCCEEEEEEcCCCEEEEEecCCCc------eEEEECCEEEEccCCCcCCCCCCCCCCCCEEEeCcHHHHHHHHHHh----
Confidence 445799999888888875432221 12799999999999999999999986 4577788888887776643
Q ss_pred hccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC-CCcHHHHHHHHH
Q 018704 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATT 292 (351)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~-~~~~~~~~~~~~ 292 (351)
...++++|||||.+|+|+|..|.+++ .+|+++++. .+++ .+++++.+.+.+
T Consensus 147 -------------~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~ 199 (452)
T 2cdu_A 147 -------------PKAKTITIIGSGYIGAELAEAYSNQN--------------YNVNLIDGHERVLYKYFDKEFTDILAK 199 (452)
T ss_dssp -------------GGCSEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred -------------ccCCeEEEECcCHHHHHHHHHHHhcC--------------CEEEEEEcCCchhhhhhhhhHHHHHHH
Confidence 34469999999999999999998876 899999997 4666 689999999999
Q ss_pred HhhhcCcEEEcCe-EEEEeC--CeE--EecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 293 QLSKSGVRLVRGI-VKDVDS--QKL--ILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 293 ~l~~~gV~~~~~~-v~~v~~--~~v--~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.+++.||+++++. |++++. +++ ...+|+++++|.||+|+|++|+ ++++.. ++++++|
T Consensus 200 ~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~ll~~~-l~~~~~G 262 (452)
T 2cdu_A 200 DYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGK-VAMLDNG 262 (452)
T ss_dssp HHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCGGGTTT-SCBCTTS
T ss_pred HHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHHHHHHh-hhcCCCC
Confidence 9999999999995 988865 333 2347888999999999999999 788776 7776655
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-31 Score=249.25 Aligned_cols=241 Identities=24% Similarity=0.368 Sum_probs=186.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCccccc-hhhhh-hhcccccccccccchhccchhhhcCCCeEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLLAS-TCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (351)
+.+||+|||||++|+++|..|++.|+ +|+|||+++...|. +.+.. ...+......+... . .......++.++
T Consensus 3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~-~~~~~~~gv~~~ 78 (431)
T 1q1r_A 3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLR---T-PDAYAAQNIQLL 78 (431)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSS---C-HHHHHHTTEEEE
T ss_pred CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhccc---C-HHHHHhCCCEEE
Confidence 35899999999999999999999998 79999998876653 22211 11121111111111 1 112233477776
Q ss_pred E-EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-cc---ccccCCHHHHHHHHHHHH
Q 018704 137 L-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-EN---ATFLREVHHAQEIRRKLL 211 (351)
Q Consensus 137 ~-~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~---~~~~~~~~~~~~~~~~~~ 211 (351)
. ..|+.++.+.+.+.+ .++. ++.||+||+|||+.|+.|++||.+ +. ++++++.+++..+.+.+
T Consensus 79 ~~~~v~~i~~~~~~v~~---~~g~--------~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l- 146 (431)
T 1q1r_A 79 GGTQVTAINRDRQQVIL---SDGR--------ALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQL- 146 (431)
T ss_dssp CSCCEEEEETTTTEEEE---TTSC--------EEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTC-
T ss_pred eCCEEEEEECCCCEEEE---CCCC--------EEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHHh-
Confidence 6 478999998887765 3555 899999999999999999999975 33 66677888877766543
Q ss_pred HhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCC-CcHHHHHH
Q 018704 212 LNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS-FDDRLRHY 289 (351)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~-~~~~~~~~ 289 (351)
...++++|||||.+|+|+|..|.+.+ .+|+++++.+ +++. +++++.+.
T Consensus 147 ----------------~~~~~vvViGgG~~g~E~A~~l~~~G--------------~~Vtlv~~~~~~l~~~~~~~~~~~ 196 (431)
T 1q1r_A 147 ----------------IADNRLVVIGGGYIGLEVAATAIKAN--------------MHVTLLDTAARVLERVTAPPVSAF 196 (431)
T ss_dssp ----------------CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSTTTTTSCHHHHHH
T ss_pred ----------------hcCCeEEEECCCHHHHHHHHHHHhCC--------------CEEEEEEeCCccccchhhHHHHHH
Confidence 23469999999999999999999887 8999999974 5553 88999999
Q ss_pred HHHHhhhcCcEEEcCe-EEEEeC----C---eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 290 ATTQLSKSGVRLVRGI-VKDVDS----Q---KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 290 ~~~~l~~~gV~~~~~~-v~~v~~----~---~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
+.+.+++.||+++++. |++++. + .+.+.+|+++++|.||+|+|++|+ ++++.+|++++
T Consensus 197 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~ 263 (431)
T 1q1r_A 197 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD 263 (431)
T ss_dssp HHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS
T ss_pred HHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCC
Confidence 9999999999999994 988864 2 577889999999999999999999 88888888764
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-31 Score=250.96 Aligned_cols=243 Identities=17% Similarity=0.250 Sum_probs=177.9
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCccccchh-hhhhhcccc-cccccccchhccchhhhcCCCeEEE-E
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTL-EFRSVAEPIARIQPAISREPGSYFF-L 137 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~ 137 (351)
+||+|||||+|||+||..|++. |++|+|||+++...|.+. +.....+.. ....+... ....+ ...++.++ .
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~gi~~~~~ 78 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYI---TEEEL-RRQKIQLLLN 78 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCC---CHHHH-HHTTEEEECS
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcC---CHHHH-HHCCCEEEEC
Confidence 6999999999999999999997 899999999998776532 111111111 11111111 11112 23466654 5
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhc
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
.+|+.++.+.+.+.+....++ ..+.||+||||||+.|..|++||.+ +.+++++++.+...+.+..
T Consensus 79 ~~V~~id~~~~~v~v~~~~~~--------~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~------ 144 (452)
T 3oc4_A 79 REVVAMDVENQLIAWTRKEEQ--------QWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLL------ 144 (452)
T ss_dssp CEEEEEETTTTEEEEEETTEE--------EEEECSEEEECCCCCBCCCCCBTTTCTTEEEGGGCC----CCHHH------
T ss_pred CEEEEEECCCCEEEEEecCce--------EEEEcCEEEECCCcccCCCCCCCCCCCCEEEeCCHHHHHHHHHHH------
Confidence 689999999999887522223 3899999999999999999999986 4566666665555544432
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCC-CcHHHHHHHHHHh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQL 294 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~-~~~~~~~~~~~~l 294 (351)
...++++|||+|.+|+|+|..+.+++ .+|+++++. .+++. +++++.+.+.+.+
T Consensus 145 -----------~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l 199 (452)
T 3oc4_A 145 -----------ENSQTVAVIGAGPIGMEAIDFLVKMK--------------KTVHVFESLENLLPKYFDKEMVAEVQKSL 199 (452)
T ss_dssp -----------HTCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTTCCHHHHHHHHHHH
T ss_pred -----------hcCCEEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEccCccccccCCHHHHHHHHHHH
Confidence 23469999999999999999999887 899999997 46665 8999999999999
Q ss_pred hhcCcEEEcCe-EEEEe--CCe--EEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 295 SKSGVRLVRGI-VKDVD--SQK--LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 295 ~~~gV~~~~~~-v~~v~--~~~--v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
++.||+++.+. |++++ +++ +.+.+| ++++|.||+|+|++|+ ++++.. ++++++|
T Consensus 200 ~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~-~~~~~~g 259 (452)
T 3oc4_A 200 EKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQLAYLDKK-IQRNLDQ 259 (452)
T ss_dssp HTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCCCSSCCTT-SCBCTTS
T ss_pred HHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCChHHHHhh-hccCCCC
Confidence 99999999995 99987 333 566666 8999999999999999 776653 6666555
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=244.05 Aligned_cols=247 Identities=21% Similarity=0.319 Sum_probs=186.4
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCccccchh-hhhhhcccc-cccccccchhccchhhhcCCCeEE-EE
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTL-EFRSVAEPIARIQPAISREPGSYF-FL 137 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~ 137 (351)
+||+|||||+||+++|..|++. |.+|+|||+++...|.+. +.....+.. ....+.. .....+. ..++.+ ..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~gv~~~~~ 76 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRY---MTGEKME-SRGVNVFSN 76 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBS---CCHHHHH-HTTCEEEET
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhc---CCHHHHH-HCCCEEEEC
Confidence 4899999999999999999997 999999999987665432 221222221 1121111 1112222 236666 55
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhc
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
..|..++.+.+.+.+....+++ ..++.||+||||||+.|+.|++||.+ +++++++++.++..+.+.+.
T Consensus 77 ~~v~~i~~~~~~v~~~~~~~g~------~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~----- 145 (447)
T 1nhp_A 77 TEITAIQPKEHQVTVKDLVSGE------ERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV----- 145 (447)
T ss_dssp EEEEEEETTTTEEEEEETTTCC------EEEEECSEEEECCCEEECCCCSTTTTSBSEECCCHHHHHHHHHHHHT-----
T ss_pred CEEEEEeCCCCEEEEEecCCCc------eEEEeCCEEEEcCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHhh-----
Confidence 7899999999988875433343 12589999999999999999999986 45777777878777766541
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-CCcHHHHHHHHHHh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQL 294 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~l 294 (351)
....++++|||+|.+|+|+|..+.+++ .+|+++++.+ +++ .+++++.+.+.+.+
T Consensus 146 ----------~~~~~~vvIiG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l 201 (447)
T 1nhp_A 146 ----------DPEVNNVVVIGSGYIGIEAAEAFAKAG--------------KKVTVIDILDRPLGVYLDKEFTDVLTEEM 201 (447)
T ss_dssp ----------CTTCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTCCHHHHHHHHHHH
T ss_pred ----------hcCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCcccccccCCHHHHHHHHHHH
Confidence 013469999999999999999999877 8999999974 566 58899999999999
Q ss_pred hhcCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 295 SKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 295 ~~~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
++.||+++.+. |++++.+ .+.+ +|.++++|.||+|+|++|+ ++++.+ ++++++|
T Consensus 202 ~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~-~~~~~~G 261 (447)
T 1nhp_A 202 EANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPNTAWLKGT-LELHPNG 261 (447)
T ss_dssp HTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEESCGGGTTT-SCBCTTS
T ss_pred HhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCChHHHHhh-hhhcCCC
Confidence 99999999995 9998764 2444 5678999999999999999 788776 7666555
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=242.89 Aligned_cols=239 Identities=19% Similarity=0.349 Sum_probs=185.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCccccc-hhhhhhhcccccccccccch-hccchhhhcCCCeEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPI-ARIQPAISREPGSYFFL 137 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 137 (351)
++||+|||||+||+++|..|++.| .+|+|+|++....|. +.+......... ...+ ......+....++.++.
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~ 79 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKD----ADGLAMAEPGAMAEQLNARILT 79 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCC----HHHHEEECHHHHHHHTTCEEEC
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCC----HHHhhccCHHHHHHhCCcEEEe
Confidence 479999999999999999999988 569999998754443 333332211111 1111 11222233345677764
Q ss_pred -EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhh
Q 018704 138 -SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (351)
Q Consensus 138 -~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (351)
.+|..++.+.+.+.+ ++. .+.||+||+|||+.|+.|++||.+ +.+++.+++.++..+++.+
T Consensus 80 ~~~v~~i~~~~~~v~~----~~~--------~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~----- 142 (384)
T 2v3a_A 80 HTRVTGIDPGHQRIWI----GEE--------EVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAA----- 142 (384)
T ss_dssp SCCCCEEEGGGTEEEE----TTE--------EEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHHHHH-----
T ss_pred CCEEEEEECCCCEEEE----CCc--------EEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHHHhh-----
Confidence 578999988887765 233 799999999999999999999976 5678888888888777654
Q ss_pred ccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCC-CcHHHHHHHHHH
Q 018704 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS-FDDRLRHYATTQ 293 (351)
Q Consensus 216 ~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~-~~~~~~~~~~~~ 293 (351)
...++++|||+|.+|+|+|..|.+++ .+|+++++.+ +++. +++.+.+.+.+.
T Consensus 143 ------------~~~~~v~ViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~~~~~~~~~~~~l~~~ 196 (384)
T 2v3a_A 143 ------------AGKRRVLLLGAGLIGCEFANDLSSGG--------------YQLDVVAPCEQVMPGLLHPAAAKAVQAG 196 (384)
T ss_dssp ------------TTCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTTSCHHHHHHHHHH
T ss_pred ------------ccCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCcchhhcccCHHHHHHHHHH
Confidence 23469999999999999999999887 8999999974 5555 488899999999
Q ss_pred hhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 294 LSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 294 l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
+++.||+++.+. |++++. + .+.+.+|+++++|.||+|+|++|+ ++++.+|++++
T Consensus 197 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~ 256 (384)
T 2v3a_A 197 LEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVN 256 (384)
T ss_dssp HHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHHHHHTTCCBS
T ss_pred HHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCCC
Confidence 999999999995 988864 2 577788989999999999999999 68888888775
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=244.30 Aligned_cols=247 Identities=20% Similarity=0.295 Sum_probs=194.5
Q ss_pred CcEEEECCchhHHHHHHhhhc---cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 63 PRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
++|||||||++||++|..|++ .|++|+|||+++.+.+.+.+.....+......+...+.+. ....++.++..+
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~gv~~~~~~ 77 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEA----LPEKGIQFQEGT 77 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHH----TGGGTCEEEECE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHH----HhhCCeEEEEee
Confidence 589999999999999999999 8999999999998888776655444444444333333332 334478888889
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDV 219 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (351)
|+.++.+.+.+.+... .+. ..++.||+||+|||..|+.|.+||+++...++.+..++..+++.+..
T Consensus 78 v~~i~~~~~~V~~~~g-~~~------~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~~------- 143 (409)
T 3h8l_A 78 VEKIDAKSSMVYYTKP-DGS------MAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLES------- 143 (409)
T ss_dssp EEEEETTTTEEEEECT-TSC------EEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHHHHHH-------
T ss_pred EEEEeCCCCEEEEccC-Ccc------cceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHHHHHH-------
Confidence 9999999998877531 111 23699999999999999999999987667777788888888877632
Q ss_pred CCCCHhhhcccCeEEEECCC-------------------h------HHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEe
Q 018704 220 PGISEEEKSRLLHCVVVGGG-------------------P------TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE 274 (351)
Q Consensus 220 p~~~~~~~~~~~~v~VvGgG-------------------~------~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~ 274 (351)
..++++|||+| . .++|+|..+..... + ...+++.+|++++
T Consensus 144 ---------~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~----~--~g~~~~~~v~~~~ 208 (409)
T 3h8l_A 144 ---------FQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFK----K--KGMLDKVHVTVFS 208 (409)
T ss_dssp ---------CCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHH----T--TTCTTTEEEEEEC
T ss_pred ---------hcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHH----H--cCCCCCeEEEEEe
Confidence 11367899999 2 47888877654321 1 1112346999999
Q ss_pred CCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCccccccC
Q 018704 275 ANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSL 342 (351)
Q Consensus 275 ~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~ 342 (351)
+.+.++.+++.+.+.+.+.+++.||+++++. |++++.+++++++|+++++|.||+|+|++|+++++.+
T Consensus 209 ~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~~~l~~~ 277 (409)
T 3h8l_A 209 PGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGNPALKNS 277 (409)
T ss_dssp SSSSSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEECCHHHHTS
T ss_pred CCccccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCccHHHHhc
Confidence 9887788889999999999999999999995 9999999999999999999999999999999888777
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-30 Score=242.55 Aligned_cols=248 Identities=25% Similarity=0.341 Sum_probs=190.7
Q ss_pred CcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEe
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
++|||||||+||++||.+|++.+ ++|||||+++++.|.|.++....|.....++..++... ....++.++.++|
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~----~~~~gv~~i~~~v 78 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPL----LPKFNIEFINEKA 78 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTT----GGGGTEEEECSCE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHH----HHHCCcEEEEeEE
Confidence 68999999999999999999854 78999999999999999998888887776665555544 3345899999999
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (351)
+.||++.+.+.+ ++|+ ++.||+||||||+.+. +++||.+++.+.+++++++..+++++...
T Consensus 79 ~~Id~~~~~V~~---~~g~--------~i~YD~LViAtG~~~~-~~i~G~~e~~~~~~~~~~a~~~~~~l~~~------- 139 (430)
T 3hyw_A 79 ESIDPDANTVTT---QSGK--------KIEYDYLVIATGPKLV-FGAEGQEENSTSICTAEHALETQKKLQEL------- 139 (430)
T ss_dssp EEEETTTTEEEE---TTCC--------EEECSEEEECCCCEEE-CCSBTHHHHSCCCSSHHHHHHHHHHHHHH-------
T ss_pred EEEECCCCEEEE---CCCC--------EEECCEEEEeCCCCcc-CCccCcccCcCCcccHHHHHHHHHHHHhh-------
Confidence 999999999976 4666 8999999999999865 46899888888899999999988877432
Q ss_pred CCCHhhhcccCeEEEECCCh------HHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----CCcHHHHHHH
Q 018704 221 GISEEEKSRLLHCVVVGGGP------TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFDDRLRHYA 290 (351)
Q Consensus 221 ~~~~~~~~~~~~v~VvGgG~------~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~----~~~~~~~~~~ 290 (351)
...+.++|+||+. .+.|++..+... +.++ ..+.+.+|++++..+.+. ...+...+.+
T Consensus 140 -------~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~----l~~~--g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l 206 (430)
T 3hyw_A 140 -------YANPGPVVIGAIPGVSCFGPAYEFALMLHYE----LKKR--GIRYKVPMTFITSEPYLGHFGVGGIGASKRLV 206 (430)
T ss_dssp -------HHSCCCEEEEECTTCCCCHHHHHHHHHHHHH----HHHT--TCGGGCCEEEECSSSSTTCTTTTCSTTHHHHH
T ss_pred -------ccCCceEEEeCCCcEEEhHHHHHHHHHHHHH----HHHh--cccccceeeeecccchhhhccchhhHHHHHHH
Confidence 1222456666553 223443333321 2221 223457899998875443 3446677888
Q ss_pred HHHhhhcCcEEEcCe-EEEEeCCeEEecC----CcEEeccEEEEecCCCCccccccCCCCC
Q 018704 291 TTQLSKSGVRLVRGI-VKDVDSQKLILND----GTEVPYGLLVWSTGVGPSTLVKSLDLPK 346 (351)
Q Consensus 291 ~~~l~~~gV~~~~~~-v~~v~~~~v~~~~----g~~~~~D~vi~a~G~~p~~~~~~~gl~~ 346 (351)
++.++++||+++++. |++++.+++.+++ ++++++|.+++++|++|++++...++.+
T Consensus 207 ~~~l~~~GV~~~~~~~v~~v~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~l 267 (430)
T 3hyw_A 207 EDLFAERNIDWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGDKV 267 (430)
T ss_dssp HHHHHHTTCEEECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECEEECCHHHHTTCTTT
T ss_pred HHHHHhCCeEEEeCceEEEEeCCceEEEeeCCCceEeecceEEEeccCCCchHHHhccccc
Confidence 899999999999995 9999999888764 3479999999999999998777665443
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=243.41 Aligned_cols=250 Identities=18% Similarity=0.288 Sum_probs=182.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCccccc-hhhhhhh-ccccc-------cccc--------ccchh
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFT-PLLASTC-VGTLE-------FRSV--------AEPIA 121 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~~-~~~~~~~-~~~~~-------~~~~--------~~~~~ 121 (351)
..+||||||||+||++||..|++. +.+|+|||+++++.|. +.+.... .+... +..+ .....
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS 89 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchH
Confidence 457999999999999999999876 8899999999877654 2221111 11000 0000 00000
Q ss_pred ccc--hhhh--cCCCeEEEEE-EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCc-----c
Q 018704 122 RIQ--PAIS--REPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-----K 191 (351)
Q Consensus 122 ~~~--~~~~--~~~~~~~~~~-~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~-----~ 191 (351)
.+. ..+. ...++.++.. +|+.++.+.+.+.+ .++. ++.||+||||||+.|+.|++++. .
T Consensus 90 ~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~---~~g~--------~i~yd~lviATGs~p~~~~~~~~~~~~~~ 158 (493)
T 1m6i_A 90 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKL---NDGS--------QITYEKCLIATGGTPRSLSAIDRAGAEVK 158 (493)
T ss_dssp GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEE---TTSC--------EEEEEEEEECCCEEECCCHHHHTSCHHHH
T ss_pred hhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEE---CCCC--------EEECCEEEECCCCCCCCCCCccccccccc
Confidence 000 0111 1346777775 89999998888766 4565 89999999999999988776552 1
Q ss_pred ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 018704 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (351)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~ 271 (351)
+.++.+++..++..+.+.+ ...++++|||||.+|+|+|..|.+.+.+ .+.+|+
T Consensus 159 ~~v~~~~~~~d~~~l~~~~-----------------~~~~~vvViGgG~iG~E~A~~l~~~~~~----------~g~~V~ 211 (493)
T 1m6i_A 159 SRTTLFRKIGDFRSLEKIS-----------------REVKSITIIGGGFLGSELACALGRKARA----------LGTEVI 211 (493)
T ss_dssp HTEEECCSHHHHHHHHHHH-----------------HHCSEEEEECCSHHHHHHHHHHHHHHHH----------HTCEEE
T ss_pred CceEEEcCHHHHHHHHHHh-----------------hcCCeEEEECCCHHHHHHHHHHHhhhhh----------cCCEEE
Confidence 3456677888888777654 2346999999999999999999875421 127899
Q ss_pred EEeCCC--CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc-cccccCC
Q 018704 272 LIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLD 343 (351)
Q Consensus 272 ~~~~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~g 343 (351)
++++.. +.+.+++.+.+.+.+.+++.||+++++. |++++. + .+++.+|++++||.||+|+|++|+ ++++.+|
T Consensus 212 ~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~g 291 (493)
T 1m6i_A 212 QLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGG 291 (493)
T ss_dssp EECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHT
T ss_pred EEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcC
Confidence 998864 2345678889999999999999999994 998864 2 477889999999999999999999 7888888
Q ss_pred CCCCC
Q 018704 344 LPKSP 348 (351)
Q Consensus 344 l~~~~ 348 (351)
+++++
T Consensus 292 l~~~~ 296 (493)
T 1m6i_A 292 LEIDS 296 (493)
T ss_dssp CCBCT
T ss_pred Ccccc
Confidence 88875
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=231.32 Aligned_cols=231 Identities=16% Similarity=0.206 Sum_probs=167.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccc--cccccchhccchhhhcCCCeEEEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEF--RSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
++||+|||||++||++|..|++.|++|+|||++......+... .+.+.. .............+....++.++..+
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 78 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHS---HGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGR 78 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCC---CSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhh---cCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeE
Confidence 4799999999999999999999999999999875432111110 011111 11112222333334444578888889
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcccc---ccccCCHHHHHHHHHHHHHhhhc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
|+.++.+.+.+.+.. .++. ++.||+||+|||..|+.|.+||.+.. ..+...+.+.
T Consensus 79 v~~i~~~~~~~~v~~-~~g~--------~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~------------- 136 (297)
T 3fbs_A 79 VTDAKGSFGEFIVEI-DGGR--------RETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHG------------- 136 (297)
T ss_dssp EEEEEEETTEEEEEE-TTSC--------EEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHT-------------
T ss_pred EEEEEEcCCeEEEEE-CCCC--------EEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcc-------------
Confidence 999998877776654 4555 89999999999999999999997531 1111111110
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~ 296 (351)
.....++++|||+|++|+|+|..|.+. + +|+++++... .+ .+.+.+.+++
T Consensus 137 ---------~~~~~~~v~vvG~G~~~~e~a~~l~~~--------------g-~v~~v~~~~~--~~----~~~~~~~l~~ 186 (297)
T 3fbs_A 137 ---------YELDQGKIGVIAASPMAIHHALMLPDW--------------G-ETTFFTNGIV--EP----DADQHALLAA 186 (297)
T ss_dssp ---------GGGTTCEEEEECCSTTHHHHHHHGGGT--------------S-EEEEECTTTC--CC----CHHHHHHHHH
T ss_pred ---------hhhcCCEEEEEecCccHHHHHHHhhhc--------------C-cEEEEECCCC--CC----CHHHHHHHHH
Confidence 002346999999999999999988753 3 8999998643 22 2345677888
Q ss_pred cCcEEEcCeEEEEeCC-eEEecCCcEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 297 SGVRLVRGIVKDVDSQ-KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 297 ~gV~~~~~~v~~v~~~-~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
.||+++..+|++++.+ .+.+.+|+++++|.||+|+|++|+ +|++.++++++
T Consensus 187 ~gv~i~~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~ 239 (297)
T 3fbs_A 187 RGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVE 239 (297)
T ss_dssp TTCEEECSCEEEEETTEEEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEE
T ss_pred CCcEEEcceeeeeecCCeEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccc
Confidence 9999997569999887 899999999999999999999999 88888887765
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=242.75 Aligned_cols=240 Identities=23% Similarity=0.300 Sum_probs=171.4
Q ss_pred CCcEEEECCchhHHHHHHhhhc-cCceEEEEcC--------CCccccchhhhhhh---------------------cccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSP--------RNHMVFTPLLASTC---------------------VGTL 111 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie~--------~~~~~~~~~~~~~~---------------------~~~~ 111 (351)
++||+|||||++|+++|++|++ .|++|+|||+ ...+... +....| .+..
T Consensus 7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~-~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~ 85 (495)
T 2wpf_A 7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGT-CVNVGCVPKKLMVTGAQYMDHLRESAGFGWE 85 (495)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHH-HHHHSHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred ccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCe-eecCCcchHHHHHHHHHHHHHHhHHHhcCcc
Confidence 4799999999999999999999 9999999992 2322111 000000 0000
Q ss_pred c-----ccccccch---hcc-------chhhhcCC-CeEEEEEEeeeEeCCCCEEEEEeecC-----ccccCCCceeEee
Q 018704 112 E-----FRSVAEPI---ARI-------QPAISREP-GSYFFLSHCAGIDTDNHVVHCETVTD-----ELRTLEPWKFKIS 170 (351)
Q Consensus 112 ~-----~~~~~~~~---~~~-------~~~~~~~~-~~~~~~~~v~~i~~~~~~v~~~~~~~-----~~~~~~~~~~~~~ 170 (351)
. ..++.... ... ........ ++.++...+..++. +.+.+....+ +. .+.
T Consensus 86 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~--~~v~v~~~~~~~~~~~~--------~~~ 155 (495)
T 2wpf_A 86 FDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESK--NVVVVRETADPKSAVKE--------RLQ 155 (495)
T ss_dssp CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEET--TEEEEESSSSTTSCEEE--------EEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeC--CEEEEeecCCccCCCCe--------EEE
Confidence 0 00110000 000 01112234 88888888887764 6666642122 33 799
Q ss_pred ccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHH
Q 018704 171 YDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELS 250 (351)
Q Consensus 171 ~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~ 250 (351)
||+||||||+.|+.|++||. +.+++ ..++ +.+... .++++|||||.+|+|+|..|.
T Consensus 156 ~d~lViATGs~p~~p~i~G~-~~~~~---~~~~----------~~~~~~----------~~~vvViGgG~ig~E~A~~l~ 211 (495)
T 2wpf_A 156 ADHILLATGSWPQMPAIPGI-EHCIS---SNEA----------FYLPEP----------PRRVLTVGGGFISVEFAGIFN 211 (495)
T ss_dssp EEEEEECCCEEECCCCCTTG-GGCEE---HHHH----------TTCSSC----------CSEEEEECSSHHHHHHHHHHH
T ss_pred cCEEEEeCCCCcCCCCCCCc-ccccc---HHHH----------Hhhhhc----------CCeEEEECCCHHHHHHHHHHH
Confidence 99999999999999999997 33332 2221 112222 359999999999999999998
Q ss_pred HH---HHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC-----eEEecCCc
Q 018704 251 DF---IMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILNDGT 320 (351)
Q Consensus 251 ~~---~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~-----~v~~~~g~ 320 (351)
++ + .+|+++++. .+++.+++++.+.+.+.+++.||+++++. |.+++.+ .+.+.+|+
T Consensus 212 ~~~~~g--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~ 277 (495)
T 2wpf_A 212 AYKPPG--------------GKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGK 277 (495)
T ss_dssp HHCCTT--------------CEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSC
T ss_pred hhCCCC--------------CeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCc
Confidence 87 6 899999997 57888999999999999999999999995 9888642 57778898
Q ss_pred EEeccEEEEecCCCCc-c-c-cccCCCCCCCCC
Q 018704 321 EVPYGLLVWSTGVGPS-T-L-VKSLDLPKSPGG 350 (351)
Q Consensus 321 ~~~~D~vi~a~G~~p~-~-~-~~~~gl~~~~~G 350 (351)
++++|.||+|+|++|+ + + ++.+|++++++|
T Consensus 278 ~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G 310 (495)
T 2wpf_A 278 TLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKG 310 (495)
T ss_dssp EEEESEEEECSCEEECCGGGTGGGTTCCBCTTS
T ss_pred EEEcCEEEECCCCcccccccchhhcCccCCCCC
Confidence 9999999999999999 5 3 678888887666
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=230.13 Aligned_cols=239 Identities=18% Similarity=0.222 Sum_probs=164.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccc-cccchhccchhhhcCCCeEEEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS-VAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
+++||+|||||++||++|+.|++.|++|+|||++ ..............+.+.. ....+...........++.++..+
T Consensus 14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 91 (323)
T 3f8d_A 14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDI 91 (323)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEESC
T ss_pred CccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence 3579999999999999999999999999999997 1110000000001111111 011222222233344466666689
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccc---cccccCCHHHHHHHHHHHHHhhhc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
|+.++.+.+.+.+.. .++. .+.||+||+|||+.|+.|.+||.+. ...+.....+ ..
T Consensus 92 v~~i~~~~~~~~v~~-~~g~--------~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~-----~~------- 150 (323)
T 3f8d_A 92 VEKIENRGDEFVVKT-KRKG--------EFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVAD-----AP------- 150 (323)
T ss_dssp EEEEEEC--CEEEEE-SSSC--------EEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHH-----GG-------
T ss_pred EEEEEecCCEEEEEE-CCCC--------EEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCC-----Hh-------
Confidence 999998877776654 3445 8999999999999999999999753 2222211111 00
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~ 296 (351)
....++++|||+|.+|+|+|..|.+.+ .+|+++++...+.. ++. .+.+.+++
T Consensus 151 ----------~~~~~~v~vvG~G~~~~e~a~~l~~~g--------------~~v~~~~~~~~~~~-~~~---~~~~~~~~ 202 (323)
T 3f8d_A 151 ----------LFKNRVVAVIGGGDSALEGAEILSSYS--------------TKVYLIHRRDTFKA-QPI---YVETVKKK 202 (323)
T ss_dssp ----------GGTTCEEEEECCSHHHHHHHHHHHHHS--------------SEEEEECSSSSCCS-CHH---HHHHHHTC
T ss_pred ----------HcCCCEEEEECCCHHHHHHHHHHHHhC--------------CeEEEEEeCCCCCc-CHH---HHHHHHhC
Confidence 123469999999999999999999876 89999999753322 222 22333445
Q ss_pred cCcEEEcCe-EEEEeCC----eEEecC---Cc--EEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQ----KLILND---GT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~----~v~~~~---g~--~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.||+++.+. |++++.+ ++++.+ |+ ++++|.||+|+|++|+ ++++.+|++++++|
T Consensus 203 ~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g 267 (323)
T 3f8d_A 203 PNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNG 267 (323)
T ss_dssp TTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTS
T ss_pred CCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCC
Confidence 599999995 9998765 477765 76 6899999999999999 99999999887766
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=237.35 Aligned_cols=252 Identities=21% Similarity=0.276 Sum_probs=189.1
Q ss_pred CCcEEEECCchhHHHHHHhhhc---cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
++||||||||++|+++|..|++ .|++|+|||+++.+.|.+.+.....+......+...+.. +....++.++.+
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~~~gv~~~~~ 79 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRH----YVERKGIHFIAQ 79 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHH----HHHTTTCEEECS
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHH----HHHHCCCEEEEe
Confidence 3799999999999999999999 899999999999998888777766665544444333333 334568888889
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccc---cccccCCHHHHHHHHHHHHHhhh
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNLM 215 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~---~~~~~~~~~~~~~~~~~~~~~~~ 215 (351)
+|+.++.+.+.+.+ .++. ++.||+||+|||+.|+.|.+||.++ +.+.+.++.++..+.+.+...+
T Consensus 80 ~v~~id~~~~~V~~---~~g~--------~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~- 147 (437)
T 3sx6_A 80 SAEQIDAEAQNITL---ADGN--------TVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALL- 147 (437)
T ss_dssp CEEEEETTTTEEEE---TTSC--------EEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHH-
T ss_pred EEEEEEcCCCEEEE---CCCC--------EEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHH-
Confidence 99999999887765 4555 7999999999999999999999863 4566778888888877653211
Q ss_pred ccCCCCCCHhhhcccCeEEEECCChHH------HHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCCCC-----CCCc
Q 018704 216 LSDVPGISEEEKSRLLHCVVVGGGPTG------VEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEIL-----SSFD 283 (351)
Q Consensus 216 ~~~~p~~~~~~~~~~~~v~VvGgG~~a------~e~a~~l~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~l-----~~~~ 283 (351)
..++++|||+|++| +|+|..++....+ . ..+...+ |+++++.+.+ +.++
T Consensus 148 -------------~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~----~--g~~~~~~~Vtlv~~~~~~~~~~l~~~~ 208 (437)
T 3sx6_A 148 -------------REPGPIVIGAMAGASCFGPAYEYAMIVASDLKK----R--GMRDKIPSFTFITSEPYIGHLGIQGVG 208 (437)
T ss_dssp -------------HSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHH----T--TCGGGCSCEEEEESSSSTTCTTTTCCT
T ss_pred -------------hCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHH----c--CCcccCcEEEEEcCCccccccccCcch
Confidence 12367899997654 8988777654311 1 1112244 9999997533 3233
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeCCeEEecC---------CcEEeccEEEEecCCCCccccc-cCCCCCCCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILND---------GTEVPYGLLVWSTGVGPSTLVK-SLDLPKSPGG 350 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~~v~~~~---------g~~~~~D~vi~a~G~~p~~~~~-~~gl~~~~~G 350 (351)
+..+.+.+.+++.||+++++. |++++++++.+.+ ++++++|.+++++|+.++.++. ..|+ .+++|
T Consensus 209 -~~~~~~~~~l~~~gI~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl-~~~~G 284 (437)
T 3sx6_A 209 -DSKGILTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL-CNPGG 284 (437)
T ss_dssp -THHHHHHHHHHHTTCEEECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT-BCTTS
T ss_pred -HHHHHHHHHHHHCCCEEEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccc-cCCCC
Confidence 477888899999999999995 9999999887764 6779999999999999884443 3465 45555
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-29 Score=237.68 Aligned_cols=243 Identities=21% Similarity=0.291 Sum_probs=171.9
Q ss_pred CCcEEEECCchhHHHHHHhhhc-cCceEEEEcC--------CCccccchhhhhhh---------------------cccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSP--------RNHMVFTPLLASTC---------------------VGTL 111 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie~--------~~~~~~~~~~~~~~---------------------~~~~ 111 (351)
++||+|||||++|+++|++|++ .|++|+|||+ +..+... +....| .+..
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~-c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~ 81 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGT-CVNVGCVPKKLMVTGANYMDTIRESAGFGWE 81 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCH-HHHHSHHHHHHHHHHHHHHHHHHHGGGGTEE
T ss_pred cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCcc-ccCCCcchhhHHHHHHHHHHHHHHHHhcCcc
Confidence 4799999999999999999999 9999999992 3322111 000000 0000
Q ss_pred c-----ccccccchh----------ccchhhhcCC-CeEEEEEEeeeEeCCCCEEEEEee--cCccccCCCceeEeeccE
Q 018704 112 E-----FRSVAEPIA----------RIQPAISREP-GSYFFLSHCAGIDTDNHVVHCETV--TDELRTLEPWKFKISYDK 173 (351)
Q Consensus 112 ~-----~~~~~~~~~----------~~~~~~~~~~-~~~~~~~~v~~i~~~~~~v~~~~~--~~~~~~~~~~~~~~~~d~ 173 (351)
. ..++..... .......... ++.++.+.+..++. +.+.+... .++. ....+.||+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~--~~v~v~~~~~~~g~-----~~~~~~~d~ 154 (490)
T 1fec_A 82 LDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDN--HTVLVRESADPNSA-----VLETLDTEY 154 (490)
T ss_dssp CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEET--TEEEEESSSSTTSC-----EEEEEEEEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeC--CEEEEEeeccCCCC-----ceEEEEcCE
Confidence 0 000100000 0111122344 89998888888774 56665321 1330 002899999
Q ss_pred EEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHH-
Q 018704 174 LVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF- 252 (351)
Q Consensus 174 lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~- 252 (351)
||||||+.|..|++||. +.++ +..++ +.+...| ++++|||||.+|+|+|..|.++
T Consensus 155 lviAtGs~p~~p~i~g~-~~~~---~~~~~----------~~~~~~~----------~~vvViGgG~ig~E~A~~l~~~~ 210 (490)
T 1fec_A 155 ILLATGSWPQHLGIEGD-DLCI---TSNEA----------FYLDEAP----------KRALCVGGGYISIEFAGIFNAYK 210 (490)
T ss_dssp EEECCCEEECCCCSBTG-GGCB---CHHHH----------TTCSSCC----------SEEEEECSSHHHHHHHHHHHHHS
T ss_pred EEEeCCCCCCCCCCCCc-ccee---cHHHH----------hhhhhcC----------CeEEEECCCHHHHHHHHHHHhhc
Confidence 99999999999999987 3332 22221 1122223 5999999999999999999887
Q ss_pred --HHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC-----eEEecCCcEEe
Q 018704 253 --IMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILNDGTEVP 323 (351)
Q Consensus 253 --~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~-----~v~~~~g~~~~ 323 (351)
+ .+|+++++. .+++.+++++.+.+.+.+++.||+++++. |++++.+ .+.+.+|++++
T Consensus 211 ~~g--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~ 276 (490)
T 1fec_A 211 ARG--------------GQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEAD 276 (490)
T ss_dssp CTT--------------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEE
T ss_pred cCc--------------CeEEEEEcCCCcccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEE
Confidence 6 899999997 57888999999999999999999999995 9988642 56778888999
Q ss_pred ccEEEEecCCCCc-c-c-cccCCCCCCCCC
Q 018704 324 YGLLVWSTGVGPS-T-L-VKSLDLPKSPGG 350 (351)
Q Consensus 324 ~D~vi~a~G~~p~-~-~-~~~~gl~~~~~G 350 (351)
+|.||+|+|++|+ + + ++.+|++++++|
T Consensus 277 ~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G 306 (490)
T 1fec_A 277 YDVVMLAIGRVPRSQTLQLEKAGVEVAKNG 306 (490)
T ss_dssp ESEEEECSCEEESCTTSCGGGGTCCBCTTS
T ss_pred cCEEEEccCCCcCccccCchhcCccCCCCC
Confidence 9999999999999 5 4 678888887665
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=231.89 Aligned_cols=247 Identities=15% Similarity=0.201 Sum_probs=165.7
Q ss_pred CCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch--hhhhh--hcccccccc--cccchhccchhhhcCCC
Q 018704 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP--LLAST--CVGTLEFRS--VAEPIARIQPAISREPG 132 (351)
Q Consensus 59 ~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~--~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~ 132 (351)
..+++||+|||||++||++|+.|++.|++|+|||+.+...+.+ .+... ....+.+.. ....+...........+
T Consensus 19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 98 (338)
T 3itj_A 19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFG 98 (338)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcC
Confidence 3456899999999999999999999999999999965211110 00000 000011110 01122222223333447
Q ss_pred eEEEEEEeeeEeCCCCEEEEEee--cCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHH
Q 018704 133 SYFFLSHCAGIDTDNHVVHCETV--TDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKL 210 (351)
Q Consensus 133 ~~~~~~~v~~i~~~~~~v~~~~~--~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~ 210 (351)
+.++...|+.++.+.+.+.+... .++. .+.||+||+|||..|+.|.+||.+.. ....+.....+.+.+
T Consensus 99 v~i~~~~v~~i~~~~~~~~v~~~~~~~~~--------~~~~d~vvlAtG~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~ 168 (338)
T 3itj_A 99 TEIITETVSKVDLSSKPFKLWTEFNEDAE--------PVTTDAIILATGASAKRMHLPGEETY--WQKGISACAVCDGAV 168 (338)
T ss_dssp CEEECSCEEEEECSSSSEEEEETTCSSSC--------CEEEEEEEECCCEEECCCCCTTHHHH--BTTTEESCHHHHTTS
T ss_pred CEEEEeEEEEEEEcCCEEEEEEEecCCCc--------EEEeCEEEECcCCCcCCCCCCCchhc--cCccEEEchhcccch
Confidence 77877779999999888877553 2333 79999999999999999999997421 111111111111110
Q ss_pred HHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHH
Q 018704 211 LLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 290 (351)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~ 290 (351)
.....++++|||+|.+|+|+|..|.+.+ .+|+++++...+.. .+.+
T Consensus 169 ---------------~~~~~~~v~vvG~G~~g~e~a~~l~~~g--------------~~v~~v~~~~~~~~-----~~~~ 214 (338)
T 3itj_A 169 ---------------PIFRNKPLAVIGGGDSACEEAQFLTKYG--------------SKVFMLVRKDHLRA-----STIM 214 (338)
T ss_dssp ---------------GGGTTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCS-----CHHH
T ss_pred ---------------hhcCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEcCCccCC-----CHHH
Confidence 0134469999999999999999998876 89999999754322 2334
Q ss_pred HHHhhhc-CcEEEcCe-EEEEeCC-----eEEecC-----CcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 291 TTQLSKS-GVRLVRGI-VKDVDSQ-----KLILND-----GTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 291 ~~~l~~~-gV~~~~~~-v~~v~~~-----~v~~~~-----g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.+.+.+. ||+++.+. |++++.+ +|++.+ +.++++|.||+|+|++|+ .+++. +++++++|
T Consensus 215 ~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G 286 (338)
T 3itj_A 215 QKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAG 286 (338)
T ss_dssp HHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT-TBCBCTTS
T ss_pred HHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC-ceEecCCC
Confidence 4555554 99999995 9998764 277765 467999999999999999 67766 88877666
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=235.80 Aligned_cols=241 Identities=17% Similarity=0.203 Sum_probs=171.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchh----hh-----------hhhc-----cccc---------
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LA-----------STCV-----GTLE--------- 112 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~----~~-----------~~~~-----~~~~--------- 112 (351)
++||+|||||++|+++|+.|++.|.+|+|||++... .... .+ .... +...
T Consensus 11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~~G-G~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (479)
T 2hqm_A 11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAKALG-GTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHL 89 (479)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSCTT-HHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGGC
T ss_pred cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCCcC-CcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccccccC
Confidence 479999999999999999999999999999997421 1000 00 0000 0000
Q ss_pred ccccccc----------hhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCc
Q 018704 113 FRSVAEP----------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (351)
Q Consensus 113 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p 182 (351)
..++... +...........++.++...+..++.. .+.+.. .+++ ...+.||+||+|||+.|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~--~~~v~~-~~g~------~~~~~~d~lviAtGs~p 160 (479)
T 2hqm_A 90 TFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDG--NVEVQK-RDNT------TEVYSANHILVATGGKA 160 (479)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTS--CEEEEE-SSSC------CEEEEEEEEEECCCEEE
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCC--EEEEEe-CCCc------EEEEEeCEEEEcCCCCC
Confidence 0000000 000111122345788888887776543 454433 2332 13689999999999999
Q ss_pred CCC-CCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhh
Q 018704 183 STF-GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261 (351)
Q Consensus 183 ~~p-~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~ 261 (351)
..| ++||.+ .+++ ..+... +.. ..++++|||||.+|+|+|..|.+++
T Consensus 161 ~~p~~i~g~~-~~~~---~~~~~~----------l~~----------~~~~vvViGgG~ig~E~A~~l~~~g-------- 208 (479)
T 2hqm_A 161 IFPENIPGFE-LGTD---SDGFFR----------LEE----------QPKKVVVVGAGYIGIELAGVFHGLG-------- 208 (479)
T ss_dssp CCCTTSTTGG-GSBC---HHHHHH----------CSS----------CCSEEEEECSSHHHHHHHHHHHHTT--------
T ss_pred CCCCCCCCcc-cccc---hHHHhc----------ccc----------cCCeEEEECCCHHHHHHHHHHHHcC--------
Confidence 999 899873 3322 222211 122 2359999999999999999999887
Q ss_pred cCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC------eEEecCC-cEEeccEEEEecC
Q 018704 262 SHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ------KLILNDG-TEVPYGLLVWSTG 332 (351)
Q Consensus 262 ~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~------~v~~~~g-~~~~~D~vi~a~G 332 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++++. |++++.+ .+.+.+| +++++|.||+|+|
T Consensus 209 ------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G 282 (479)
T 2hqm_A 209 ------SETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIG 282 (479)
T ss_dssp ------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSC
T ss_pred ------CceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCC
Confidence 899999997 57888999999999999999999999995 9988642 4777888 7899999999999
Q ss_pred CCCc-cc-cccCCCCCCCCC
Q 018704 333 VGPS-TL-VKSLDLPKSPGG 350 (351)
Q Consensus 333 ~~p~-~~-~~~~gl~~~~~G 350 (351)
++|+ .+ ++.+|++++++|
T Consensus 283 ~~p~~~l~l~~~gl~~~~~G 302 (479)
T 2hqm_A 283 RKSHLGMGSENVGIKLNSHD 302 (479)
T ss_dssp EEECCCSSGGGGTCCBCTTS
T ss_pred CCCccccChhhcCceECCCC
Confidence 9999 56 688888887766
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-29 Score=241.11 Aligned_cols=245 Identities=18% Similarity=0.235 Sum_probs=168.8
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch--hhhhhhc--------------------------ccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP--LLASTCV--------------------------GTL 111 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~--~~~~~~~--------------------------~~~ 111 (351)
...+||+||||||||++||..|++.|++|+|||+++...+.. .+.+.|. +..
T Consensus 30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~ 109 (519)
T 3qfa_A 30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWK 109 (519)
T ss_dssp SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcc
Confidence 345899999999999999999999999999999854111000 0011000 100
Q ss_pred c----ccccc---cchhc-------cchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEe
Q 018704 112 E----FRSVA---EPIAR-------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIA 177 (351)
Q Consensus 112 ~----~~~~~---~~~~~-------~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviA 177 (351)
. ..++. ..... .........++.++...+..++.. .+.+.. .+++ ..++.||+||||
T Consensus 110 ~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~--~v~v~~-~~g~------~~~i~~d~lViA 180 (519)
T 3qfa_A 110 VEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPH--RIKATN-NKGK------EKIYSAERFLIA 180 (519)
T ss_dssp CCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETT--EEEEEC-TTCC------CCEEEEEEEEEC
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCC--EEEEEc-CCCC------EEEEECCEEEEE
Confidence 0 00111 00010 111123345788888888877755 444432 2332 137999999999
Q ss_pred cCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHH
Q 018704 178 LGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV 257 (351)
Q Consensus 178 tG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~ 257 (351)
||+.|+.|++||.++.+++ ..++ +.+...| ++++|||||.+|+|+|..|.+++
T Consensus 181 TGs~p~~p~i~G~~~~~~t---~~~~----------~~l~~~~----------~~vvVIGgG~ig~E~A~~l~~~G---- 233 (519)
T 3qfa_A 181 TGERPRYLGIPGDKEYCIS---SDDL----------FSLPYCP----------GKTLVVGASYVALECAGFLAGIG---- 233 (519)
T ss_dssp CCEEECCCCCTTHHHHCBC---HHHH----------TTCSSCC----------CSEEEECCSHHHHHHHHHHHHTT----
T ss_pred CCCCcCCCCCCCccCceEc---HHHH----------hhhhhcC----------CeEEEECCcHHHHHHHHHHHHcC----
Confidence 9999999999997543332 1111 2233334 48999999999999999999887
Q ss_pred HhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC------CeEEe----cCCc---EEe
Q 018704 258 RQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS------QKLIL----NDGT---EVP 323 (351)
Q Consensus 258 ~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~------~~v~~----~~g~---~~~ 323 (351)
.+|++++++.+++.+++++.+.+.+.+++.||+++.+. ++++.. +.+.+ .+|. +++
T Consensus 234 ----------~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~ 303 (519)
T 3qfa_A 234 ----------LDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGE 303 (519)
T ss_dssp ----------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEE
T ss_pred ----------CeEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEE
Confidence 89999999888899999999999999999999999994 555532 23322 3552 578
Q ss_pred ccEEEEecCCCCc-cc--cccCCCCCC-CCC
Q 018704 324 YGLLVWSTGVGPS-TL--VKSLDLPKS-PGG 350 (351)
Q Consensus 324 ~D~vi~a~G~~p~-~~--~~~~gl~~~-~~G 350 (351)
+|.||+|+|++|+ ++ ++.+|++++ ++|
T Consensus 304 ~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G 334 (519)
T 3qfa_A 304 YNTVMLAIGRDACTRKIGLETVGVKINEKTG 334 (519)
T ss_dssp ESEEEECSCEEESCSSSCSTTTTCCCCTTTC
T ss_pred CCEEEEecCCcccCCCCChhhcCcEEcCCCC
Confidence 9999999999999 55 677888887 455
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=239.29 Aligned_cols=243 Identities=20% Similarity=0.274 Sum_probs=171.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhc---------------------ccccccccccc-
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV---------------------GTLEFRSVAEP- 119 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~- 119 (351)
++||+|||||++|+++|..|++.|++|+|||+++.+.......+... ....+..+...
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRK 83 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHH
Confidence 47999999999999999999999999999998776532211100000 00011101000
Q ss_pred -----hh--ccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccc
Q 018704 120 -----IA--RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE 192 (351)
Q Consensus 120 -----~~--~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~ 192 (351)
+. .....+....++.++...+..++.. .+.+.. .+++ ..++.||+||+|||+.|+.|++||.+
T Consensus 84 ~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~--~~~V~~-~~g~------~~~~~~d~lviAtG~~p~~p~i~G~~- 153 (466)
T 3l8k_A 84 DYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPT--HVIVKT-DEGK------EIEAETRYMIIASGAETAKLRLPGVE- 153 (466)
T ss_dssp HHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETT--EEEEEE-TTSC------EEEEEEEEEEECCCEEECCCCCTTGG-
T ss_pred HhheeccccchHHHHHHhCCCEEEEeEEEEecCC--eEEEEc-CCCc------EEEEecCEEEECCCCCccCCCCCCcc-
Confidence 11 2223344566889988899988865 444432 3454 11299999999999999999999985
Q ss_pred cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEE
Q 018704 193 NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTL 272 (351)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~ 272 (351)
.+ .+..++..++. .+. ...++++|||||.+|+|+|..|.+++ .+|++
T Consensus 154 ~~---~t~~~~~~~~~------~l~----------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtl 200 (466)
T 3l8k_A 154 YC---LTSDDIFGYKT------SFR----------KLPQDMVIIGAGYIGLEIASIFRLMG--------------VQTHI 200 (466)
T ss_dssp GS---BCHHHHHSTTC------SCC----------SCCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEE
T ss_pred ce---EeHHHHHHHHH------HHh----------hCCCeEEEECCCHHHHHHHHHHHHcC--------------CEEEE
Confidence 32 23333321111 111 12359999999999999999999887 89999
Q ss_pred EeCC-CCCCCC-cHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---Ce--EEec--CCc--EEeccEEEEecCCCCc-cc-
Q 018704 273 IEAN-EILSSF-DDRLRHYATTQLSKSGVRLVRGI-VKDVDS---QK--LILN--DGT--EVPYGLLVWSTGVGPS-TL- 338 (351)
Q Consensus 273 ~~~~-~~l~~~-~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~~--v~~~--~g~--~~~~D~vi~a~G~~p~-~~- 338 (351)
+++. .+++.+ ++++.+.+.+.++ |+++.+. |++++. ++ +.+. +|+ ++++|.||+|+|++|+ ++
T Consensus 201 v~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~ 277 (466)
T 3l8k_A 201 IEMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEG 277 (466)
T ss_dssp ECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTT
T ss_pred EEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccc
Confidence 9997 577777 9999998888876 9999994 888876 33 5666 676 7999999999999999 53
Q ss_pred cccCCCCCCCCC
Q 018704 339 VKSLDLPKSPGG 350 (351)
Q Consensus 339 ~~~~gl~~~~~G 350 (351)
++.+|++++++|
T Consensus 278 l~~~gl~~~~~G 289 (466)
T 3l8k_A 278 AREIGLSISKTG 289 (466)
T ss_dssp TGGGTCCBCSSS
T ss_pred hhhcCceeCCCC
Confidence 678888887665
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=243.43 Aligned_cols=242 Identities=18% Similarity=0.207 Sum_probs=173.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchh----hhhhh----------------cc-ccccc----
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LASTC----------------VG-TLEFR---- 114 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~----~~~~~----------------~~-~~~~~---- 114 (351)
..++||+|||||++|+++|++|++.|++|+|||+++.+..... .+... .+ .....
T Consensus 41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 120 (523)
T 1mo9_A 41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVV 120 (523)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhh
Confidence 3458999999999999999999999999999999874321100 00000 00 00000
Q ss_pred ---ccccchhccch---hhh-----cCCCeEEE-EEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCc
Q 018704 115 ---SVAEPIARIQP---AIS-----REPGSYFF-LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (351)
Q Consensus 115 ---~~~~~~~~~~~---~~~-----~~~~~~~~-~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p 182 (351)
.+...+..... .+. ...++.++ ...+..++. +.+.+ . +. .+.||+||+|||+.|
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~---~-g~--------~~~~d~lViATGs~p 186 (523)
T 1mo9_A 121 GIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEA---A-GK--------VFKAKNLILAVGAGP 186 (523)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEE---T-TE--------EEEBSCEEECCCEEC
T ss_pred hHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEE---C-CE--------EEEeCEEEECCCCCC
Confidence 00011111011 122 44567776 777877775 45554 2 44 799999999999999
Q ss_pred CCCCCCCcccc-ccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhh
Q 018704 183 STFGIHGVKEN-ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261 (351)
Q Consensus 183 ~~p~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~ 261 (351)
..|++||.+.. +++ ..++. +. +...| .++++|||||.+|+|+|..+.+++
T Consensus 187 ~~p~i~G~~~~~v~~---~~~~~---~~------l~~~~---------g~~vvViGgG~~g~E~A~~l~~~G-------- 237 (523)
T 1mo9_A 187 GTLDVPGVNAKGVFD---HATLV---EE------LDYEP---------GSTVVVVGGSKTAVEYGCFFNATG-------- 237 (523)
T ss_dssp CCCCSTTTTSBTEEE---HHHHH---HH------CCSCC---------CSEEEEECCSHHHHHHHHHHHHTT--------
T ss_pred CCCCCCCcccCcEee---HHHHH---HH------HHhcC---------CCeEEEECCCHHHHHHHHHHHHcC--------
Confidence 99999997532 332 22221 11 12223 159999999999999999999887
Q ss_pred cCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce------EEecCCc-EEeccEEEEe
Q 018704 262 SHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK------LILNDGT-EVPYGLLVWS 330 (351)
Q Consensus 262 ~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~------v~~~~g~-~~~~D~vi~a 330 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++++. |++++. ++ |.+.+|+ ++++|.||+|
T Consensus 238 ------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A 311 (523)
T 1mo9_A 238 ------RRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLG 311 (523)
T ss_dssp ------CEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEEC
T ss_pred ------CeEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEEC
Confidence 899999997 57788899999999999999999999994 998864 33 5667887 8999999999
Q ss_pred cCCCCc-c-ccccCCCCCCCCC
Q 018704 331 TGVGPS-T-LVKSLDLPKSPGG 350 (351)
Q Consensus 331 ~G~~p~-~-~~~~~gl~~~~~G 350 (351)
+|++|+ + +++.+|++++++|
T Consensus 312 ~G~~p~~~~~l~~~gl~~~~~G 333 (523)
T 1mo9_A 312 LGEQPRSAELAKILGLDLGPKG 333 (523)
T ss_dssp CCCEECCHHHHHHHTCCBCTTS
T ss_pred cCCccCCccCHHHcCCccCCCC
Confidence 999999 5 7888888887666
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-29 Score=240.78 Aligned_cols=245 Identities=18% Similarity=0.166 Sum_probs=168.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcccc--chhhhhhhc---------------------------ccc-
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF--TPLLASTCV---------------------------GTL- 111 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~--~~~~~~~~~---------------------------~~~- 111 (351)
.|||+||||||+|++||.++++.|.+|+|||+...... ...+.+.|. |..
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~ 121 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF 121 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence 48999999999999999999999999999997542100 000111110 000
Q ss_pred -----cccccccchh-------ccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 112 -----EFRSVAEPIA-------RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 112 -----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
++..+..... ..........++.++.+...-++. +++.+....+.. +...++++++|||||
T Consensus 122 ~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~--~~v~V~~~~~~~-----~~~~i~a~~iiIATG 194 (542)
T 4b1b_A 122 DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDK--NTVSYYLKGDLS-----KEETVTGKYILIATG 194 (542)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEET--TEEEEEEC--CC-----CEEEEEEEEEEECCC
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCC--CcceEeecccCC-----ceEEEeeeeEEeccC
Confidence 0000000000 011112234467777776665554 444432211100 123899999999999
Q ss_pred CCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHH
Q 018704 180 AEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (351)
Q Consensus 180 ~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~ 258 (351)
++|..|+.++.+ +..+++++ .|.+..+|. +++|||||++|+|+|..+.++|
T Consensus 195 s~P~~P~~~~~~~~~~~ts~~-------------~l~l~~lP~----------~lvIIGgG~IGlE~A~~~~~lG----- 246 (542)
T 4b1b_A 195 CRPHIPDDVEGAKELSITSDD-------------IFSLKKDPG----------KTLVVGASYVALECSGFLNSLG----- 246 (542)
T ss_dssp EEECCCSSSBTHHHHCBCHHH-------------HTTCSSCCC----------SEEEECCSHHHHHHHHHHHHHT-----
T ss_pred CCCCCCCcccCCCccccCchh-------------hhccccCCc----------eEEEECCCHHHHHHHHHHHhcC-----
Confidence 999998654433 33333221 155677775 9999999999999999999998
Q ss_pred hhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCC
Q 018704 259 QRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~ 333 (351)
.+||+++++++++.+|+++.+.+.+.+++.||+++++. +.+++. + .+.+.++.++++|.|++|+|+
T Consensus 247 ---------~~VTii~~~~~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR 317 (542)
T 4b1b_A 247 ---------YDVTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGR 317 (542)
T ss_dssp ---------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE
T ss_pred ---------CeEEEecccccccccchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccc
Confidence 99999999889999999999999999999999999995 777754 3 456678888999999999999
Q ss_pred CCc-cc--cccCCCCCCCCC
Q 018704 334 GPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 334 ~p~-~~--~~~~gl~~~~~G 350 (351)
+|| +. ++.+|++++.+|
T Consensus 318 ~Pnt~~L~le~~gv~~~~~~ 337 (542)
T 4b1b_A 318 KGDIDGLNLESLNMNVNKSN 337 (542)
T ss_dssp EESCGGGCGGGTTCCEETTT
T ss_pred cCCccccCcccceeeecccC
Confidence 999 43 345566665443
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=234.49 Aligned_cols=237 Identities=19% Similarity=0.253 Sum_probs=169.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc------hh---hh-----hhh------cccc------cccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT------PL---LA-----STC------VGTL------EFRS 115 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~------~~---~~-----~~~------~~~~------~~~~ 115 (351)
++||+|||||++|+++|++|++.|++|+|||++...... |. +. ... .+.. .+..
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWET 83 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCCCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence 479999999999999999999999999999997421100 00 00 000 0000 0000
Q ss_pred cccc-------hhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCC
Q 018704 116 VAEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (351)
Q Consensus 116 ~~~~-------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~ 188 (351)
+... +...........++.++...+..++. +.+.+ ++. .+.||+||||||+.|..|++|
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~~----~g~--------~~~~d~lviAtGs~p~~p~i~ 149 (450)
T 1ges_A 84 LIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--KTLEV----NGE--------TITADHILIATGGRPSHPDIP 149 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--TEEEE----TTE--------EEEEEEEEECCCEEECCCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CEEEE----CCE--------EEEeCEEEECCCCCCCCCCCC
Confidence 0000 00000111233578888887777764 45544 344 799999999999999999999
Q ss_pred CccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 018704 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (351)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~ 268 (351)
|. +.++ +..++.. +... .++++|||||.+|+|+|..|.+++ .
T Consensus 150 g~-~~~~---~~~~~~~----------~~~~----------~~~vvViGgG~~g~e~A~~l~~~g--------------~ 191 (450)
T 1ges_A 150 GV-EYGI---DSDGFFA----------LPAL----------PERVAVVGAGYIGVELGGVINGLG--------------A 191 (450)
T ss_dssp TG-GGSB---CHHHHHH----------CSSC----------CSEEEEECCSHHHHHHHHHHHHTT--------------C
T ss_pred Cc-ccee---cHHHhhh----------hhhc----------CCeEEEECCCHHHHHHHHHHHhcC--------------C
Confidence 87 3332 2222211 1222 359999999999999999999887 8
Q ss_pred EEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC-----eEEecCCcEEeccEEEEecCCCCc-c-c-
Q 018704 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPS-T-L- 338 (351)
Q Consensus 269 ~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~-----~v~~~~g~~~~~D~vi~a~G~~p~-~-~- 338 (351)
+|+++++. .+++.+++++.+.+.+.+++.||+++++. |++++.+ .+.+.+|+++++|.||+|+|++|+ + +
T Consensus 192 ~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~ 271 (450)
T 1ges_A 192 KTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNIN 271 (450)
T ss_dssp EEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSC
T ss_pred EEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCC
Confidence 99999997 57788999999999999999999999995 9888642 577789989999999999999999 5 3
Q ss_pred cccCCCCCCCCC
Q 018704 339 VKSLDLPKSPGG 350 (351)
Q Consensus 339 ~~~~gl~~~~~G 350 (351)
++.+|++++++|
T Consensus 272 ~~~~gl~~~~~g 283 (450)
T 1ges_A 272 LEAAGVKTNEKG 283 (450)
T ss_dssp HHHHTCCBCTTS
T ss_pred chhcCceECCCC
Confidence 577788887666
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=237.34 Aligned_cols=239 Identities=14% Similarity=0.199 Sum_probs=162.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcccc---chhhhh-----------hh-----ccccc--ccccc---
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF---TPLLAS-----------TC-----VGTLE--FRSVA--- 117 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~---~~~~~~-----------~~-----~~~~~--~~~~~--- 117 (351)
++||+|||||++|+++|..|++.|++|+|||+++.... ....+. .. .+... ..++.
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLV 81 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHHH
Confidence 47999999999999999999999999999999852100 000000 00 01000 00010
Q ss_pred -------cchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEee----------cCccccCCCceeEeeccEEEEecCC
Q 018704 118 -------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETV----------TDELRTLEPWKFKISYDKLVIALGA 180 (351)
Q Consensus 118 -------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~----------~~~~~~~~~~~~~~~~d~lviAtG~ 180 (351)
..+...........++.++...+..++. +.+.+... .++. .+.||+||||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~--~~v~v~~~~~~~~~~~~~~~~~--------~~~~d~lViAtGs 151 (500)
T 1onf_A 82 ERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSE--NRILIKGTKDNNNKDNGPLNEE--------ILEGRNILIAVGN 151 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC------------------------------------CBSSEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEEeccccccccccCCCce--------EEEeCEEEECCCC
Confidence 0011111122234578888777666553 45544321 1133 7999999999999
Q ss_pred CcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhh
Q 018704 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (351)
Q Consensus 181 ~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~ 260 (351)
.|..|++||.+ .+++ ..++ +.+.. .++++|||||.+|+|+|..|.+++
T Consensus 152 ~p~~p~i~G~~-~~~~---~~~~----------~~~~~-----------~~~vvViGgG~ig~E~A~~l~~~g------- 199 (500)
T 1onf_A 152 KPVFPPVKGIE-NTIS---SDEF----------FNIKE-----------SKKIGIVGSGYIAVELINVIKRLG------- 199 (500)
T ss_dssp CBCCCSCTTGG-GCEE---HHHH----------TTCCC-----------CSEEEEECCSHHHHHHHHHHHTTT-------
T ss_pred CCCCCCCCCCC-cccC---HHHH----------hccCC-----------CCeEEEECChHHHHHHHHHHHHcC-------
Confidence 99999999973 3332 2111 11111 359999999999999999999877
Q ss_pred hcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC-----eEEecCCcE-EeccEEEEecC
Q 018704 261 YSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILNDGTE-VPYGLLVWSTG 332 (351)
Q Consensus 261 ~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~-----~v~~~~g~~-~~~D~vi~a~G 332 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++++. |++++.+ .+.+.+|++ +++|.||+|+|
T Consensus 200 -------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G 272 (500)
T 1onf_A 200 -------IDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVG 272 (500)
T ss_dssp -------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCC
T ss_pred -------CeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCC
Confidence 899999997 57888999999999999999999999995 9998642 477788988 99999999999
Q ss_pred CCCc-c-c-cccCCCCCCCCC
Q 018704 333 VGPS-T-L-VKSLDLPKSPGG 350 (351)
Q Consensus 333 ~~p~-~-~-~~~~gl~~~~~G 350 (351)
++|+ + + ++.+|+++ ++|
T Consensus 273 ~~p~~~~l~~~~~g~~~-~~G 292 (500)
T 1onf_A 273 RSPDTENLKLEKLNVET-NNN 292 (500)
T ss_dssp BCCTTTTSSCTTTTCCB-SSS
T ss_pred CCcCCCCCCchhcCccc-cCC
Confidence 9999 4 4 57888887 455
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=235.43 Aligned_cols=236 Identities=19% Similarity=0.279 Sum_probs=169.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchh----hhh-----------hh-----ccccc---ccccc-
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS-----------TC-----VGTLE---FRSVA- 117 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~----~~~-----------~~-----~~~~~---~~~~~- 117 (351)
++||+|||||++|+++|.+|++.|++|+|||++.. ..... .+. .. .+... ..++.
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~-GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKAL-GGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWPR 82 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHHH
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCCC-CCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHH
Confidence 58999999999999999999999999999999742 11100 000 00 00000 00000
Q ss_pred --cc-------hhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCC
Q 018704 118 --EP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (351)
Q Consensus 118 --~~-------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~ 188 (351)
.. +...........++.++...+..++. +.+.+ ++. .+.||+||||||+.|..|++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~--~~v~~----~g~--------~~~~d~lviAtGs~p~~p~i~ 148 (463)
T 2r9z_A 83 LVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDA--HTIEV----EGQ--------RLSADHIVIATGGRPIVPRLP 148 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEE----TTE--------EEEEEEEEECCCEEECCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccC--CEEEE----CCE--------EEEcCEEEECCCCCCCCCCCC
Confidence 00 00001111234578888877766653 45554 344 799999999999999999999
Q ss_pred CccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 018704 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (351)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~ 268 (351)
|. +.++ +..++.. +... .++++|||||.+|+|+|..|.+++ .
T Consensus 149 G~-~~~~---~~~~~~~----------~~~~----------~~~vvVvGgG~~g~e~A~~l~~~G--------------~ 190 (463)
T 2r9z_A 149 GA-ELGI---TSDGFFA----------LQQQ----------PKRVAIIGAGYIGIELAGLLRSFG--------------S 190 (463)
T ss_dssp TG-GGSB---CHHHHHH----------CSSC----------CSEEEEECCSHHHHHHHHHHHHTT--------------C
T ss_pred Cc-ccee---cHHHHhh----------hhcc----------CCEEEEECCCHHHHHHHHHHHhcC--------------C
Confidence 97 3332 2222211 1122 359999999999999999999887 8
Q ss_pred EEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCCc-EEeccEEEEecCCCCc-c-c-
Q 018704 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGT-EVPYGLLVWSTGVGPS-T-L- 338 (351)
Q Consensus 269 ~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g~-~~~~D~vi~a~G~~p~-~-~- 338 (351)
+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++.+ .+.+.+|+ ++++|.||+|+|++|+ + +
T Consensus 191 ~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~ 270 (463)
T 2r9z_A 191 EVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLG 270 (463)
T ss_dssp EEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSC
T ss_pred EEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCC
Confidence 99999997 57788999999999999999999999995 9888642 57778998 8999999999999999 5 3
Q ss_pred cccCCCCCCCCC
Q 018704 339 VKSLDLPKSPGG 350 (351)
Q Consensus 339 ~~~~gl~~~~~G 350 (351)
++.+|++++++|
T Consensus 271 ~~~~g~~~~~~G 282 (463)
T 2r9z_A 271 LEAAGIEVQSNG 282 (463)
T ss_dssp HHHHTCCCCTTS
T ss_pred chhcCCccCCCC
Confidence 466788877665
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=237.11 Aligned_cols=241 Identities=17% Similarity=0.206 Sum_probs=168.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc---------cccchhhhhhh---------------------cc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH---------MVFTPLLASTC---------------------VG 109 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~---------~~~~~~~~~~~---------------------~~ 109 (351)
...+||+|||||++|++||..|++.|++|+|||+... +.. .++...| .+
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG-~c~~~gciPsk~l~~~~~~~~~~~~~~~~g 85 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGG-TCVNVGCIPKKLMHQASLLGEAVHEAAAYG 85 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSC-HHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCC-eecccCchhhHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999999999999999999999999994211 110 0000000 01
Q ss_pred cccc----cccc---cchhcc-------chhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEE
Q 018704 110 TLEF----RSVA---EPIARI-------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLV 175 (351)
Q Consensus 110 ~~~~----~~~~---~~~~~~-------~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lv 175 (351)
.... .++. ...... ........++.++...+..++.. .+.+.. .++. ..+.||+||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~--~v~v~~-~~g~-------~~~~~d~lv 155 (483)
T 3dgh_A 86 WNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSH--TLLAKL-KSGE-------RTITAQTFV 155 (483)
T ss_dssp BCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETT--EEEEEC-TTCC-------EEEEEEEEE
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCC--EEEEEe-CCCe-------EEEEcCEEE
Confidence 1000 0110 001111 01122334677777777666543 444432 2332 279999999
Q ss_pred EecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHH
Q 018704 176 IALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR 255 (351)
Q Consensus 176 iAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~ 255 (351)
||||+.|+.|++||.++..++ ..+. +.+...| ++++|||||.+|+|+|..|.+++
T Consensus 156 iATGs~p~~p~i~G~~~~~~~---~~~~----------~~~~~~~----------~~vvViGgG~~g~E~A~~l~~~g-- 210 (483)
T 3dgh_A 156 IAVGGRPRYPDIPGAVEYGIT---SDDL----------FSLDREP----------GKTLVVGAGYIGLECAGFLKGLG-- 210 (483)
T ss_dssp ECCCEEECCCSSTTHHHHCBC---HHHH----------TTCSSCC----------CEEEEECCSHHHHHHHHHHHHTT--
T ss_pred EeCCCCcCCCCCCCcccccCc---HHHH----------hhhhhcC----------CcEEEECCCHHHHHHHHHHHHcC--
Confidence 999999999999997544332 1111 1222333 49999999999999999999887
Q ss_pred HHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCc-----EEec
Q 018704 256 DVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGT-----EVPY 324 (351)
Q Consensus 256 ~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~-----~~~~ 324 (351)
.+|+++++..+++.+++++.+.+.+.+++.||+++.+. |.+++. + .+.+.++. ++++
T Consensus 211 ------------~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~ 278 (483)
T 3dgh_A 211 ------------YEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVY 278 (483)
T ss_dssp ------------CEEEEEESSCSSTTSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEE
T ss_pred ------------CEEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEc
Confidence 89999999888899999999999999999999999995 888864 2 36666553 6899
Q ss_pred cEEEEecCCCCc-ccc--ccCCCCCCC
Q 018704 325 GLLVWSTGVGPS-TLV--KSLDLPKSP 348 (351)
Q Consensus 325 D~vi~a~G~~p~-~~~--~~~gl~~~~ 348 (351)
|.||+|+|++|+ +++ +.+|+++++
T Consensus 279 D~vi~a~G~~p~~~~l~l~~~gl~~~~ 305 (483)
T 3dgh_A 279 DTVLWAIGRKGLVDDLNLPNAGVTVQK 305 (483)
T ss_dssp SEEEECSCEEECCGGGTGGGTTCCCBT
T ss_pred CEEEECcccccCcCcCCchhcCccccC
Confidence 999999999999 665 777888776
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=236.69 Aligned_cols=244 Identities=21% Similarity=0.252 Sum_probs=173.8
Q ss_pred CCcEEEECCchhHHHHHHhhhcc---CceEEEEcCCCccccc-------h---hhhh-----h-----hccccc-c----
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPRNHMVFT-------P---LLAS-----T-----CVGTLE-F---- 113 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~---g~~v~vie~~~~~~~~-------~---~~~~-----~-----~~~~~~-~---- 113 (351)
++||+|||||++|+++|++|++. |++|+|||+++ +... | ++.. . ..+... .
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAK 80 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------C
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence 47999999999999999999998 99999999986 2111 0 0000 0 001110 0
Q ss_pred cccccc----------hhccchhhhcCCCeEEEEEEeeeEeCC----CCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 114 RSVAEP----------IARIQPAISREPGSYFFLSHCAGIDTD----NHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 114 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~i~~~----~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
.++... +......+....++.++...+..++.. .+.+.+.. .+++ ...+.||+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~-~~g~------~~~~~~d~lviATG 153 (499)
T 1xdi_A 81 ISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATA-ADGS------TSEHEADVVLVATG 153 (499)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEEC-TTSC------EEEEEESEEEECCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEe-CCCc------EEEEEeCEEEEcCC
Confidence 001000 111112223345788888888777763 35565543 2231 12689999999999
Q ss_pred CCcCCCCCCCcccc-ccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHH
Q 018704 180 AEASTFGIHGVKEN-ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (351)
Q Consensus 180 ~~p~~p~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~ 258 (351)
+.|..|++||.+.. +++..+.. .+.. ..++++|||+|.+|+|+|..+.+++
T Consensus 154 s~p~~p~i~g~~~~~v~~~~~~~-------------~~~~----------~~~~vvViGgG~ig~E~A~~l~~~g----- 205 (499)
T 1xdi_A 154 ASPRILPSAQPDGERILTWRQLY-------------DLDA----------LPDHLIVVGSGVTGAEFVDAYTELG----- 205 (499)
T ss_dssp EEECCCGGGCCCSSSEEEGGGGG-------------GCSS----------CCSSEEEESCSHHHHHHHHHHHHTT-----
T ss_pred CCCCCCCCCCCCcCcEEehhHhh-------------hhhc----------cCCeEEEECCCHHHHHHHHHHHHcC-----
Confidence 99999989987532 33332221 1111 2259999999999999999999887
Q ss_pred hhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecC
Q 018704 259 QRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTG 332 (351)
Q Consensus 259 ~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G 332 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++++. |++++.+ .+.+.+|+++++|.||+|+|
T Consensus 206 ---------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G 276 (499)
T 1xdi_A 206 ---------VPVTVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIG 276 (499)
T ss_dssp ---------CCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCC
T ss_pred ---------CeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCC
Confidence 899999997 57788999999999999999999999995 9988753 34556888999999999999
Q ss_pred CCCc-cc--cccCCCCCCCCC
Q 018704 333 VGPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 333 ~~p~-~~--~~~~gl~~~~~G 350 (351)
++|+ ++ ++.+|++++++|
T Consensus 277 ~~p~~~~l~l~~~gl~~~~~G 297 (499)
T 1xdi_A 277 SVPNTSGLGLERVGIQLGRGN 297 (499)
T ss_dssp EEECCSSSCTTTTTCCCBTTT
T ss_pred CCcCCCcCCchhcCceECCCC
Confidence 9999 67 778888887766
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=222.04 Aligned_cols=238 Identities=16% Similarity=0.186 Sum_probs=163.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhccccccccc-ccchhccchhhhcCCCeEEEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSV-AEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
+.+||+|||||++|+++|..|++.|++|+|||+..... ...........+.+... ...+...........++.++..+
T Consensus 15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (319)
T 3cty_A 15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGG-LTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGVE 93 (319)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTG-GGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETCC
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCc-cccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEee
Confidence 35799999999999999999999999999999853211 00000000000111000 01122222223344577777788
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcccc---ccccCCHHHHHHHHHHHHHhhhc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
|..++.+.+.+.+.. ++. .+.||+||+|||+.|+.|++||.+.. ..+. .... ...
T Consensus 94 v~~i~~~~~~~~v~~--~~~--------~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~--~~~~---~~~------- 151 (319)
T 3cty_A 94 VRSIKKTQGGFDIET--NDD--------TYHAKYVIITTGTTHKHLGVKGESEYFGKGTSY--CSTC---DGY------- 151 (319)
T ss_dssp EEEEEEETTEEEEEE--SSS--------EEEEEEEEECCCEEECCCCCBTTTTTBTTTEES--CHHH---HGG-------
T ss_pred EEEEEEeCCEEEEEE--CCC--------EEEeCEEEECCCCCcccCCCCChHHhCCceEEE--EEec---chh-------
Confidence 999988777666643 444 79999999999999999999887431 1111 1111 110
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~ 296 (351)
....++++|||+|.+|+|+|..|.+++ .+|+++++.+.+. .++ .+.+.+++
T Consensus 152 ----------~~~~~~v~viG~G~~g~e~a~~l~~~g--------------~~V~~i~~~~~~~-~~~----~l~~~l~~ 202 (319)
T 3cty_A 152 ----------LFKGKRVVTIGGGNSGAIAAISMSEYV--------------KNVTIIEYMPKYM-CEN----AYVQEIKK 202 (319)
T ss_dssp ----------GGBTSEEEEECCSHHHHHHHHHHTTTB--------------SEEEEECSSSSCC-SCH----HHHHHHHH
T ss_pred ----------hcCCCeEEEECCCHHHHHHHHHHHhhC--------------CcEEEEEcCCccC-CCH----HHHHHHhc
Confidence 023469999999999999999998776 8999999975432 222 34455668
Q ss_pred cCcEEEcCe-EEEEeCC-----eEEec---CCc--EEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQ-----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~-----~v~~~---~g~--~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.||+++.+. |+++..+ ++.+. +|+ ++++|.||+|+|+.|+ ++++.+|++++++|
T Consensus 203 ~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g 268 (319)
T 3cty_A 203 RNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERG 268 (319)
T ss_dssp TTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTS
T ss_pred CCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCc
Confidence 899999995 8888753 46665 675 6899999999999999 89988888887665
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=234.50 Aligned_cols=244 Identities=18% Similarity=0.202 Sum_probs=170.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----------hhh-----------h-hhcccccc---cc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----------LLA-----------S-TCVGTLEF---RS 115 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----------~~~-----------~-~~~~~~~~---~~ 115 (351)
.++||+|||||++|+++|..|++.|++|+|||+++.+.... ++. . ...+.... .+
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLN 84 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEEC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccC
Confidence 34799999999999999999999999999999986542110 000 0 00011000 00
Q ss_pred cccc----------hhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 116 VAEP----------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 116 ~~~~----------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
+... +...........++.++...+..++. +.+.+...+++. .++.||+||+|||+.|..|
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~~~v~~~~gg~-------~~~~~d~lViAtGs~p~~p 155 (474)
T 1zmd_A 85 LDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGK--NQVTATKADGGT-------QVIDTKNILIATGSEVTPF 155 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEET--TEEEEECTTSCE-------EEEEEEEEEECCCEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecC--CEEEEEecCCCc-------EEEEeCEEEECCCCCCCCC
Confidence 0000 00001122334578888777776654 455554322121 2799999999999999999
Q ss_pred CCCCcccc-ccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 186 GIHGVKEN-ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 186 ~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
+++|.+.. ++ +..++. .+...| ++++|||||.+|+|+|..|.+++
T Consensus 156 ~i~g~~~~~v~---t~~~~~----------~~~~~~----------~~vvViGgG~~g~E~A~~l~~~g----------- 201 (474)
T 1zmd_A 156 PGITIDEDTIV---SSTGAL----------SLKKVP----------EKMVVIGAGVIGVELGSVWQRLG----------- 201 (474)
T ss_dssp TTCCCCSSSEE---CHHHHT----------TCSSCC----------SEEEEECCSHHHHHHHHHHHHTT-----------
T ss_pred CCCCCCcCcEE---cHHHHh----------hccccC----------ceEEEECCCHHHHHHHHHHHHcC-----------
Confidence 99987532 22 222221 112222 59999999999999999999887
Q ss_pred CCccEEEEEeCC-CCCC-CCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC--e-EEe-------cCCcEEeccEEEEec
Q 018704 265 KDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K-LIL-------NDGTEVPYGLLVWST 331 (351)
Q Consensus 265 ~~~~~v~~~~~~-~~l~-~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~--~-v~~-------~~g~~~~~D~vi~a~ 331 (351)
.+|+++++. .+++ .+++++.+.+.+.+++.||+++.+. |++++.+ + +.+ .+++++++|.||+|+
T Consensus 202 ---~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~ 278 (474)
T 1zmd_A 202 ---ADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCI 278 (474)
T ss_dssp ---CEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECS
T ss_pred ---CEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECc
Confidence 899999997 5777 8999999999999999999999995 9998742 2 433 356789999999999
Q ss_pred CCCCc-cc--cccCCCCCCCCC
Q 018704 332 GVGPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 332 G~~p~-~~--~~~~gl~~~~~G 350 (351)
|++|+ ++ ++.+|++++++|
T Consensus 279 G~~p~~~~l~l~~~g~~~~~~G 300 (474)
T 1zmd_A 279 GRRPFTKNLGLEELGIELDPRG 300 (474)
T ss_dssp CEEECCTTSSHHHHTCCCCTTS
T ss_pred CCCcCCCcCCchhcCCccCCCC
Confidence 99999 66 677788877665
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-28 Score=230.82 Aligned_cols=242 Identities=16% Similarity=0.137 Sum_probs=169.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhh---------------hhhhc------ccc------cc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL---------------ASTCV------GTL------EF 113 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~---------------~~~~~------~~~------~~ 113 (351)
.++||+|||||++|+++|++|++.|++|+|||++. +...... ..... +.. .+
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 81 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-TTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC-CCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCH
Confidence 35899999999999999999999999999999873 2110000 00000 110 00
Q ss_pred ccccc-------chhc-cchhhhcCC-CeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC
Q 018704 114 RSVAE-------PIAR-IQPAISREP-GSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 114 ~~~~~-------~~~~-~~~~~~~~~-~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
..+.. .+.. ....+.... ++.++...+..++.. .+.+.. .+++ ...+.||+||||||+.|+.
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~-~~g~------~~~~~~d~lviAtGs~p~~ 152 (467)
T 1zk7_A 82 SKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQ--SLTVRL-NEGG------ERVVMFDRCLVATGASPAV 152 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETT--EEEEEE-TTSS------EEEEECSEEEECCCEEECC
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCC--EEEEEe-CCCc------eEEEEeCEEEEeCCCCCCC
Confidence 00000 0000 011222334 888888888888754 454433 3441 1279999999999999999
Q ss_pred CCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 185 p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
|++||.+... +.+..+... +.. ..++++|||||.+|+|+|..+.+++
T Consensus 153 p~i~G~~~~~--~~~~~~~~~----------~~~----------~~~~vvViGgG~~g~E~A~~l~~~g----------- 199 (467)
T 1zk7_A 153 PPIPGLKESP--YWTSTEALA----------SDT----------IPERLAVIGSSVVALELAQAFARLG----------- 199 (467)
T ss_dssp CCCTTTTTSC--CBCHHHHHH----------CSS----------CCSEEEEECCSHHHHHHHHHHHHTT-----------
T ss_pred CCCCCCCcCc--eecHHHHhc----------ccc----------cCCEEEEECCCHHHHHHHHHHHHcC-----------
Confidence 9999975321 122222221 112 2359999999999999999999887
Q ss_pred CCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCc-c
Q 018704 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS-T 337 (351)
Q Consensus 265 ~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~-~ 337 (351)
.+|+++++. .+++ +++++.+.+.+.+++.||+++.+. |++++. + .+.+. +.++++|.||+|+|++|+ +
T Consensus 200 ---~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~ 274 (467)
T 1zk7_A 200 ---SKVTVLARNTLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTR 274 (467)
T ss_dssp ---CEEEEECSSCTTTT-SCHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCT
T ss_pred ---CEEEEEEECCccCC-CCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCC
Confidence 899999997 4677 899999999999999999999994 888864 2 24454 568999999999999999 5
Q ss_pred c--cccCCCCCCCCC
Q 018704 338 L--VKSLDLPKSPGG 350 (351)
Q Consensus 338 ~--~~~~gl~~~~~G 350 (351)
+ ++.+|++++++|
T Consensus 275 ~l~l~~~gl~~~~~G 289 (467)
T 1zk7_A 275 SLALDAAGVTVNAQG 289 (467)
T ss_dssp TSCGGGGTCCBCTTS
T ss_pred cCCchhcCCcCCCCC
Confidence 3 567788887666
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=236.33 Aligned_cols=239 Identities=21% Similarity=0.242 Sum_probs=170.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhh----h-----------hhh-----cccc------ccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A-----------STC-----VGTL------EFR 114 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~----~-----------~~~-----~~~~------~~~ 114 (351)
.++||+|||||++||++|+.|++.|++|+|||++... ..... + ... .+.. .+.
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~~G-G~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 97 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHKLG-GTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWR 97 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT-HHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC-CcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 4589999999999999999999999999999976421 10000 0 000 0000 000
Q ss_pred ccc-------cchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC--
Q 018704 115 SVA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF-- 185 (351)
Q Consensus 115 ~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p-- 185 (351)
.+. ..+...........++.++...+..++.....+.. ++. ++.||+||||||+.|..|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~----~g~--------~~~~d~lviAtG~~p~~p~~ 165 (478)
T 3dk9_A 98 VIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV----SGK--------KYTAPHILIATGGMPSTPHE 165 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEE----TTE--------EEECSCEEECCCEEECCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEE----CCE--------EEEeeEEEEccCCCCCCCCc
Confidence 000 00111112223345788888877777766555542 444 899999999999999999
Q ss_pred -CCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 186 -GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 186 -~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
++||.+ .+.+ ..+. +.+...| ++++|||||++|+|+|..|.+++
T Consensus 166 ~~i~G~~-~~~~---~~~~----------~~~~~~~----------~~vvViGgG~~g~E~A~~l~~~g----------- 210 (478)
T 3dk9_A 166 SQIPGAS-LGIT---SDGF----------FQLEELP----------GRSVIVGAGYIAVEMAGILSALG----------- 210 (478)
T ss_dssp TTSTTGG-GSBC---HHHH----------TTCCSCC----------SEEEEECCSHHHHHHHHHHHHTT-----------
T ss_pred CCCCCCc-eeEc---hHHh----------hchhhcC----------ccEEEECCCHHHHHHHHHHHHcC-----------
Confidence 899974 2222 2211 2223333 59999999999999999999887
Q ss_pred CCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce----EEecC---C----cEEeccEEEE
Q 018704 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK----LILND---G----TEVPYGLLVW 329 (351)
Q Consensus 265 ~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~----v~~~~---g----~~~~~D~vi~ 329 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++. ++ +.+.+ | .++++|.||+
T Consensus 211 ---~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~ 287 (478)
T 3dk9_A 211 ---SKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLW 287 (478)
T ss_dssp ---CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEE
T ss_pred ---CeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEE
Confidence 899999996 57889999999999999999999999995 888864 23 45554 2 5789999999
Q ss_pred ecCCCCc-c-c-cccCCCCCCCCC
Q 018704 330 STGVGPS-T-L-VKSLDLPKSPGG 350 (351)
Q Consensus 330 a~G~~p~-~-~-~~~~gl~~~~~G 350 (351)
|+|++|+ + + ++.+|++++++|
T Consensus 288 a~G~~p~~~~l~l~~~g~~~~~~G 311 (478)
T 3dk9_A 288 AIGRVPNTKDLSLNKLGIQTDDKG 311 (478)
T ss_dssp CSCEEESCTTSCGGGGTCCBCTTC
T ss_pred eeccccCCCCCCchhcCCeeCCCC
Confidence 9999999 4 4 678888887776
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-29 Score=223.66 Aligned_cols=239 Identities=10% Similarity=0.107 Sum_probs=158.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhccccccc--ccccchhccchhhhcCCCeEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFR--SVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
++++||+|||||||||+||++|+|.|++|+|||++..... +.....+.+... ...........++.++..+.+..
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNR---VTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYE 80 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGG---GSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEE
T ss_pred CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCe---eeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEe
Confidence 3468999999999999999999999999999998653211 000000111111 01111122233345556677777
Q ss_pred EEeeeEeCC-CCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhc
Q 018704 138 SHCAGIDTD-NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 138 ~~v~~i~~~-~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
..+..++.. ...+.+.. .++. ++.||+||||||+.|+.|++||.+... ...+.........
T Consensus 81 ~~~~~~~~~~~~~~~v~~-~~g~--------~~~a~~liiATGs~p~~p~i~G~~~~~--~~~v~~~~~~~~~------- 142 (304)
T 4fk1_A 81 KTVVMITKQSTGLFEIVT-KDHT--------KYLAERVLLATGMQEEFPSIPNVREYY--GKSLFSCPYCDGW------- 142 (304)
T ss_dssp CCEEEEEECTTSCEEEEE-TTCC--------EEEEEEEEECCCCEEECCSCTTHHHHB--TTTEESCHHHHSG-------
T ss_pred eEEEEeeecCCCcEEEEE-CCCC--------EEEeCEEEEccCCccccccccCccccc--cceeeeccccchh-------
Confidence 777766543 33444433 4565 899999999999999999999975311 1111111111111
Q ss_pred cCCCCCCHhhhcccCeEEEECCChH-HHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPT-GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS 295 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~-a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~ 295 (351)
..+.++++|||||.. ++++|..+.+++ .+|+++.++..+ .+.+.+.++
T Consensus 143 ----------~~~~~~~~VIggG~~~~~e~a~~~~~~~--------------~~v~i~~~~~~~-------~~~~~~~l~ 191 (304)
T 4fk1_A 143 ----------ELKDQPLIIISENEDHTLHMTKLVYNWS--------------TDLVIATNGNEL-------SQTIMDELS 191 (304)
T ss_dssp ----------GGTTSCEEEECCSHHHHHHHHHHHTTTC--------------SCEEEECSSCCC-------CHHHHHHHH
T ss_pred ----------HhcCCceeeecCCCchhhhHHHHHHhCC--------------ceEEEEeccccc-------hhhhhhhhh
Confidence 023357888888875 567777776655 889999886533 234556788
Q ss_pred hcCcEEEcCeEEEEeC-----CeEEecCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 296 KSGVRLVRGIVKDVDS-----QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 296 ~~gV~~~~~~v~~v~~-----~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
+.|++++.+.++.+.. ..+.+++|+++++|.+|+++|.+|+ ++++++|+++|++|
T Consensus 192 ~~g~~~~~~~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G 252 (304)
T 4fk1_A 192 NKNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNG 252 (304)
T ss_dssp TTTCCEECSCEEEEESGGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTS
T ss_pred ccceeEeeeeEEEeecCCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCC
Confidence 8999999988777765 3688999999999988888776665 88999999998887
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=234.50 Aligned_cols=243 Identities=19% Similarity=0.224 Sum_probs=169.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchh----hhh-----------------hhccccc----cccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS-----------------TCVGTLE----FRSV 116 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~----~~~-----------------~~~~~~~----~~~~ 116 (351)
++||+|||||++|+++|..|++.|++|+|||+++.+..... .+. ...+... ..++
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDS 81 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence 47999999999999999999999999999999865422100 000 0001100 0001
Q ss_pred ccc----------hhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 117 AEP----------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 117 ~~~----------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
... +......+....++.++...+..++. +.+.+.. .++. ...+.||+||+|||+.|..|+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~--~~~~v~~-~~G~------~~~~~~d~lviAtG~~p~~p~ 152 (468)
T 2qae_A 82 AKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETA--HSIRVNG-LDGK------QEMLETKKTIIATGSEPTELP 152 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEET--TEEEEEE-TTSC------EEEEEEEEEEECCCEEECCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeC--CEEEEEe-cCCc------eEEEEcCEEEECCCCCcCCCC
Confidence 000 00001122233467787777766664 4555543 3441 128999999999999999998
Q ss_pred CCCccc-cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 187 IHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 187 i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
++|.+. .++ +..++.. +... .++++|||||.+|+|+|..|.+++
T Consensus 153 ~~g~~~~~v~---t~~~~~~----------~~~~----------~~~vvViGgG~~g~E~A~~l~~~g------------ 197 (468)
T 2qae_A 153 FLPFDEKVVL---SSTGALA----------LPRV----------PKTMVVIGGGVIGLELGSVWARLG------------ 197 (468)
T ss_dssp TBCCCSSSEE---CHHHHHT----------CSSC----------CSEEEEECCSHHHHHHHHHHHHTT------------
T ss_pred CCCCCcCcee---chHHHhh----------cccC----------CceEEEECCCHHHHHHHHHHHHhC------------
Confidence 888753 222 2322221 1122 359999999999999999999887
Q ss_pred CccEEEEEeCC-CCCCCCcHHHHHHHHHHh-hhcCcEEEcC-eEEEEeCC----eEEec--CC--cEEeccEEEEecCCC
Q 018704 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQL-SKSGVRLVRG-IVKDVDSQ----KLILN--DG--TEVPYGLLVWSTGVG 334 (351)
Q Consensus 266 ~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l-~~~gV~~~~~-~v~~v~~~----~v~~~--~g--~~~~~D~vi~a~G~~ 334 (351)
.+|+++++. .+++.+++++.+.+.+.+ ++.||+++.+ +|++++.+ .+.+. +| +++++|.||+|+|++
T Consensus 198 --~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~ 275 (468)
T 2qae_A 198 --AEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRR 275 (468)
T ss_dssp --CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEE
T ss_pred --CEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcc
Confidence 899999997 578889999999999999 9999999999 49988753 24554 67 679999999999999
Q ss_pred Cc-cc--cccCCCCCCCCC
Q 018704 335 PS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 335 p~-~~--~~~~gl~~~~~G 350 (351)
|+ ++ ++.+|++++++|
T Consensus 276 p~~~~l~l~~~gl~~~~~G 294 (468)
T 2qae_A 276 PFTGGLGLDKINVAKNERG 294 (468)
T ss_dssp ECCTTSCHHHHTCCBCTTS
T ss_pred cCCCCCCchhcCCccCCCC
Confidence 99 66 677788877665
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=224.03 Aligned_cols=239 Identities=17% Similarity=0.167 Sum_probs=163.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccc--cccchhccchhhhcCCCeEEEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS--VAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
.+||+|||||++|+++|..|++.|++|+|||+..... ...........+.+.. ....+...........++.++...
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGG-QLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH 83 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTG-GGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCc-eEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee
Confidence 4799999999999999999999999999999642111 0000000000111100 011122222223334467777778
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccc-cccCCHHHHHHHHHHHHHhhhccC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA-TFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
++.++.+.+.+.+ . .++. .+.||+||+|||+.|..|++||.+... ........ ....+
T Consensus 84 v~~i~~~~~~~~v-~-~~~~--------~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~-------- 142 (320)
T 1trb_A 84 INKVDLQNRPFRL-N-GDNG--------EYTCDALIIATGASARYLGLPSEEAFKGRGVSACAT---SDGFF-------- 142 (320)
T ss_dssp EEEEECSSSSEEE-E-ESSC--------EEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHH---HHGGG--------
T ss_pred eeEEEecCCEEEE-E-eCCC--------EEEcCEEEECCCCCcCCCCCCChHHhCCceeEeccc---CCccc--------
Confidence 9999988777765 2 3555 899999999999999999888864210 01111111 11110
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcC
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSG 298 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~g 298 (351)
...++++|||+|.+|+|+|..|.+++ .+|+++++...+. .++.+.+.+.+.+++.|
T Consensus 143 ---------~~~~~v~ViG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~~g 198 (320)
T 1trb_A 143 ---------YRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR-AEKILIKRLMDKVENGN 198 (320)
T ss_dssp ---------GTTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCC-CCHHHHHHHHHHHHTSS
T ss_pred ---------cCCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEEeCCccc-cCHHHHHHHHHhcccCC
Confidence 23469999999999999999998776 8999999975432 35677778888899999
Q ss_pred cEEEcC-eEEEEeCCe-----EEecC----C--cEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 299 VRLVRG-IVKDVDSQK-----LILND----G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 299 V~~~~~-~v~~v~~~~-----v~~~~----g--~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
|+++.+ +|+++..+. |.+.+ | .++++|.||+|+|++|+ ++++ .+++++
T Consensus 199 v~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~-~~l~~~ 259 (320)
T 1trb_A 199 IILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE-GQLELE 259 (320)
T ss_dssp EEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGT-TTSCEE
T ss_pred eEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhc-cccccc
Confidence 999999 499987543 77764 4 47999999999999999 6766 355544
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=233.00 Aligned_cols=240 Identities=18% Similarity=0.246 Sum_probs=169.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----hhhh-----------hh-----ccccc-c--ccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLAS-----------TC-----VGTLE-F--RSVAE 118 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----~~~~-----------~~-----~~~~~-~--~~~~~ 118 (351)
++||+|||||++|+++|..|++.|++|+|||++ .+.... ..+. .. .+... . .++..
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 81 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAK 81 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHH
Confidence 479999999999999999999999999999997 321100 0000 00 00000 0 00000
Q ss_pred c----------hhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCc-cccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 119 P----------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE-LRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 119 ~----------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
. +...........++.++...+..++. +.+.+.. .++ . ++.||+||+|||+.|..|++
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~--~~v~V~~-~~G~~--------~i~~d~lViATGs~p~~~~~ 150 (455)
T 1ebd_A 82 VQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDA--NTVRVVN-GDSAQ--------TYTFKNAIIATGSRPIELPN 150 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEET--TEEEEEE-TTEEE--------EEECSEEEECCCEEECCBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CeEEEEe-CCCcE--------EEEeCEEEEecCCCCCCCCC
Confidence 0 11111223345578888777666654 4555543 233 3 79999999999999999988
Q ss_pred CCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 018704 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (351)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~ 267 (351)
+|.+..+ .+..+... +.. ..++++|||||.+|+|+|..|.+++
T Consensus 151 ~g~~~~v---~~~~~~~~----------~~~----------~~~~vvViGgG~~g~e~A~~l~~~g-------------- 193 (455)
T 1ebd_A 151 FKFSNRI---LDSTGALN----------LGE----------VPKSLVVIGGGYIGIELGTAYANFG-------------- 193 (455)
T ss_dssp BCCCSSE---ECHHHHHT----------CSS----------CCSEEEEECCSHHHHHHHHHHHHTT--------------
T ss_pred CCccceE---ecHHHHhc----------ccc----------CCCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 8875432 22322211 112 2359999999999999999999887
Q ss_pred cEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeE--Eec---CCcEEeccEEEEecCCCCc-c
Q 018704 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKL--ILN---DGTEVPYGLLVWSTGVGPS-T 337 (351)
Q Consensus 268 ~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v--~~~---~g~~~~~D~vi~a~G~~p~-~ 337 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++. +++ .+. +++++++|.||+|+|++|+ +
T Consensus 194 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~ 273 (455)
T 1ebd_A 194 TKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD 273 (455)
T ss_dssp CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCS
T ss_pred CcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccC
Confidence 899999997 57788899999999999999999999994 988864 334 333 4567999999999999999 6
Q ss_pred c--cccCCCCCCCCC
Q 018704 338 L--VKSLDLPKSPGG 350 (351)
Q Consensus 338 ~--~~~~gl~~~~~G 350 (351)
+ ++.+|++++++|
T Consensus 274 ~l~~~~~g~~~~~~G 288 (455)
T 1ebd_A 274 ELGLEQIGIKMTNRG 288 (455)
T ss_dssp SSSTTTTTCCBCTTS
T ss_pred cCChhhcCCccCCCC
Confidence 6 678888887666
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=235.50 Aligned_cols=243 Identities=16% Similarity=0.214 Sum_probs=169.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC--------ccccchhhhhh---------------------hcccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFTPLLAST---------------------CVGTL 111 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~--------~~~~~~~~~~~---------------------~~~~~ 111 (351)
.++||+|||||||||+||..|++.|++|+|||+.+ .+... ++... ..+..
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGt-c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~ 83 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGT-CVNVGCIPKKLMHQAALLGGMIRDAHHYGWE 83 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCH-HHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCe-ecccCCcccHHHHHHHHHHHHHHHHHhcCcc
Confidence 45899999999999999999999999999999732 11110 00000 00000
Q ss_pred ----cccccccchhc----------cchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEe
Q 018704 112 ----EFRSVAEPIAR----------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIA 177 (351)
Q Consensus 112 ----~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviA 177 (351)
...++...... .........++.++...+..++. +.+.+.. .++. ...+.||+||||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~--~~v~v~~-~~g~------~~~~~~d~lViA 154 (488)
T 3dgz_A 84 VAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDE--HTVRGVD-KGGK------ATLLSAEHIVIA 154 (488)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSS--SEEEEEC-TTSC------EEEEEEEEEEEC
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CeEEEEe-CCCc------eEEEECCEEEEc
Confidence 00011100110 01112233477787777766554 4555533 2332 238999999999
Q ss_pred cCCCcCCCC-CCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHH
Q 018704 178 LGAEASTFG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (351)
Q Consensus 178 tG~~p~~p~-i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~ 256 (351)
||+.|+.|+ +||.++.+++. .+. +.+...| ++++|||||.+|+|+|..|.+++
T Consensus 155 TGs~p~~p~~i~G~~~~~~~~---~~~----------~~~~~~~----------~~vvViGgG~ig~E~A~~l~~~g--- 208 (488)
T 3dgz_A 155 TGGRPRYPTQVKGALEYGITS---DDI----------FWLKESP----------GKTLVVGASYVALECAGFLTGIG--- 208 (488)
T ss_dssp CCEEECCCSSCBTHHHHCBCH---HHH----------TTCSSCC----------CSEEEECCSHHHHHHHHHHHHTT---
T ss_pred CCCCCCCCCCCCCcccccCcH---HHH----------HhhhhcC----------CeEEEECCCHHHHHHHHHHHHcC---
Confidence 999999998 99975443321 111 2223333 48999999999999999999887
Q ss_pred HHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---C--eEEecC---Cc--EEecc
Q 018704 257 VRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---Q--KLILND---GT--EVPYG 325 (351)
Q Consensus 257 ~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~--~v~~~~---g~--~~~~D 325 (351)
.+|+++++.++++.+++++.+.+.+.+++.||+++.+. +.+++. + .+.+.+ |+ ++++|
T Consensus 209 -----------~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D 277 (488)
T 3dgz_A 209 -----------LDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFD 277 (488)
T ss_dssp -----------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEES
T ss_pred -----------CceEEEEcCcccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECC
Confidence 89999999888899999999999999999999999994 888853 2 355544 54 47899
Q ss_pred EEEEecCCCCc-cc--cccCCCCCC-CCC
Q 018704 326 LLVWSTGVGPS-TL--VKSLDLPKS-PGG 350 (351)
Q Consensus 326 ~vi~a~G~~p~-~~--~~~~gl~~~-~~G 350 (351)
.||+|+|++|+ ++ ++.+|++++ ++|
T Consensus 278 ~vi~a~G~~p~~~~l~l~~~g~~~~~~~G 306 (488)
T 3dgz_A 278 TVLWAIGRVPETRTLNLEKAGISTNPKNQ 306 (488)
T ss_dssp EEEECSCEEESCGGGTGGGGTCCBCSSSC
T ss_pred EEEEcccCCcccCcCCccccCcEecCCCC
Confidence 99999999999 65 567788887 555
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=220.91 Aligned_cols=240 Identities=17% Similarity=0.179 Sum_probs=157.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccc--cccchhccchhhhcCCCeEEEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS--VAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
.+||+|||||++|+++|..|++.|++|+|||++. ..............+.+.. ....+...........++.++..+
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~ 86 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-PGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEMDE 86 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEECC
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC-CCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEeee
Confidence 4799999999999999999999999999999973 2111000000000011100 011122222222334467777788
Q ss_pred eeeEeCC--CCE-EEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccc-cccCCHHHHHHHHHHHHHhhh
Q 018704 140 CAGIDTD--NHV-VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA-TFLREVHHAQEIRRKLLLNLM 215 (351)
Q Consensus 140 v~~i~~~--~~~-v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 215 (351)
|+.++.+ .+. +.+.. .++. .+.||+||+|||+.|+.|++||.+... ......... ...
T Consensus 87 v~~i~~~~~~~~~~~v~~-~~g~--------~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~---~~~------ 148 (325)
T 2q7v_A 87 VQGVQHDATSHPYPFTVR-GYNG--------EYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATC---DGF------ 148 (325)
T ss_dssp EEEEEECTTSSSCCEEEE-ESSC--------EEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHH---HGG------
T ss_pred EEEEEeccCCCceEEEEE-CCCC--------EEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccC---CHH------
Confidence 9999876 432 33322 3455 899999999999999999999875311 011111111 111
Q ss_pred ccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhh
Q 018704 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS 295 (351)
Q Consensus 216 ~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~ 295 (351)
....++++|||+|.+|+|+|..|.+.+ .+|+++++.+.+. .++.+. .+.++
T Consensus 149 -----------~~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~~~~---~~l~~ 199 (325)
T 2q7v_A 149 -----------FYKGKKVVVIGGGDAAVEEGMFLTKFA--------------DEVTVIHRRDTLR-ANKVAQ---ARAFA 199 (325)
T ss_dssp -----------GGTTCEEEEECCSHHHHHHHHHHTTTC--------------SEEEEECSSSSCC-SCHHHH---HHHHT
T ss_pred -----------HcCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEeCCCcCC-cchHHH---HHHHh
Confidence 023469999999999999999998776 8999999975432 223322 22334
Q ss_pred hcCcEEEcCe-EEEEeCC----eEEec---CCc--EEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 296 KSGVRLVRGI-VKDVDSQ----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~~----~v~~~---~g~--~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
+.||+++.+. |+++..+ +|.+. +|+ ++++|.||+|+|++|+ ++++.+ ++++++|
T Consensus 200 ~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g 264 (325)
T 2q7v_A 200 NPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRDDG 264 (325)
T ss_dssp CTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTS
T ss_pred cCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhh-cccCCCc
Confidence 4699999995 9988764 57775 675 6899999999999999 788876 6666554
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=230.28 Aligned_cols=248 Identities=16% Similarity=0.137 Sum_probs=168.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchh----hhh---------------h-hcccccc---ccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS---------------T-CVGTLEF---RSVAE 118 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~----~~~---------------~-~~~~~~~---~~~~~ 118 (351)
++||+|||||++|+++|..|++.|++|+|||+++.+..... .+. . ..+.... .++..
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 85 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDM 85 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHHH
Confidence 47999999999999999999999999999999765421100 000 0 0010000 00000
Q ss_pred chh----------ccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccc----cCCCceeEeeccEEEEecCCCcCC
Q 018704 119 PIA----------RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR----TLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 119 ~~~----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~----~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
.+. ..........++.++...+..++ .+.+.+... ++.. .......++.||+||+|||+.|..
T Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~v~~~-~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~ 162 (482)
T 1ojt_A 86 LRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLD--PHHLEVSLT-AGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTK 162 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE--TTEEEEEEE-EEEETTEEEEEEEEEEEEEEEEEECCCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEcc--CCEEEEEec-CCcccccccccCcceEEEcCEEEECCCCCCCC
Confidence 000 00111223457777777655544 355555321 1200 000001279999999999999988
Q ss_pred CC-CCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcC
Q 018704 185 FG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (351)
Q Consensus 185 p~-i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~ 263 (351)
|+ +| .+..+ .+..++. .+... .++++|||||.+|+|+|..|.+++
T Consensus 163 ~~~i~-~~~~v---~~~~~~~----------~~~~~----------~~~vvViGgG~ig~E~A~~l~~~G---------- 208 (482)
T 1ojt_A 163 LPFIP-EDPRI---IDSSGAL----------ALKEV----------PGKLLIIGGGIIGLEMGTVYSTLG---------- 208 (482)
T ss_dssp CSSCC-CCTTE---ECHHHHT----------TCCCC----------CSEEEEESCSHHHHHHHHHHHHHT----------
T ss_pred CCCCC-ccCcE---EcHHHHh----------ccccc----------CCeEEEECCCHHHHHHHHHHHHcC----------
Confidence 86 66 32322 2332221 12222 359999999999999999999887
Q ss_pred CCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeCC----eEEecC----CcEEeccEEEEecCC
Q 018704 264 VKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILND----GTEVPYGLLVWSTGV 333 (351)
Q Consensus 264 ~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~~----~v~~~~----g~~~~~D~vi~a~G~ 333 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++++ +|.+++.+ .+.+.+ |+++++|.||+|+|+
T Consensus 209 ----~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~ 284 (482)
T 1ojt_A 209 ----SRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 284 (482)
T ss_dssp ----CEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred ----CeEEEEEECCccccccCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCC
Confidence 899999997 5788899999999999999999999999 49888642 466666 778999999999999
Q ss_pred CCc-cc--cccCCCCCCCCC
Q 018704 334 GPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 334 ~p~-~~--~~~~gl~~~~~G 350 (351)
+|+ ++ ++.+|++++++|
T Consensus 285 ~p~~~~l~~~~~gl~~~~~G 304 (482)
T 1ojt_A 285 APNGKLISAEKAGVAVTDRG 304 (482)
T ss_dssp EECGGGTTGGGTTCCCCTTS
T ss_pred CcCCCCCChhhcCceeCCCC
Confidence 999 66 688898887766
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-28 Score=222.08 Aligned_cols=240 Identities=13% Similarity=0.129 Sum_probs=164.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhh--hhh-hccccccccc-ccchhccchhhhcCCCeEE-E
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL--AST-CVGTLEFRSV-AEPIARIQPAISREPGSYF-F 136 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~--~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~ 136 (351)
++||+|||||++|+++|..|++.|++|+|||+++.+...... +.. ....+.+..+ ...+...........++.+ .
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 84 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSL 84 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEE
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEe
Confidence 479999999999999999999999999999998765322110 000 0000000000 0111111111222234454 3
Q ss_pred EEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC---CcCCCCCCCcccccc-cc-CCHHHHHHHHHHHH
Q 018704 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA---EASTFGIHGVKENAT-FL-REVHHAQEIRRKLL 211 (351)
Q Consensus 137 ~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~---~p~~p~i~g~~~~~~-~~-~~~~~~~~~~~~~~ 211 (351)
..+|+.++.+.+.+.+.. .++. .+.||+||+|||. .|..|+++|.+.... .. ..+.+.
T Consensus 85 ~~~v~~i~~~~~~~~v~~-~~g~--------~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~~~~-------- 147 (335)
T 2zbw_A 85 GERAETLEREGDLFKVTT-SQGN--------AYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSK-------- 147 (335)
T ss_dssp SCCEEEEEEETTEEEEEE-TTSC--------EEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSCSCG--------
T ss_pred CCEEEEEEECCCEEEEEE-CCCC--------EEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEecCch--------
Confidence 458888887766666643 4455 7999999999999 577888888642110 00 001000
Q ss_pred HhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHH
Q 018704 212 LNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291 (351)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~ 291 (351)
.....++++|||+|.+|+|+|..|.+.+ .+|+++++.+.+.. .+...+.+.
T Consensus 148 --------------~~~~~~~v~viG~G~~g~e~a~~l~~~g--------------~~V~~v~~~~~~~~-~~~~~~~l~ 198 (335)
T 2zbw_A 148 --------------AEFQGKRVLIVGGGDSAVDWALNLLDTA--------------RRITLIHRRPQFRA-HEASVKELM 198 (335)
T ss_dssp --------------GGGTTCEEEEECSSHHHHHHHHHTTTTS--------------SEEEEECSSSSCCS-CHHHHHHHH
T ss_pred --------------hhcCCCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEcCCccCc-cHHHHHHHH
Confidence 0023469999999999999999998765 89999999754322 246677788
Q ss_pred HHhhhcCcEEEcC-eEEEEeCC----eEEec---CC--cEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 292 TQLSKSGVRLVRG-IVKDVDSQ----KLILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 292 ~~l~~~gV~~~~~-~v~~v~~~----~v~~~---~g--~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
+.+++.||+++.+ .|++++.+ +|.+. +| .++++|.||+|+|++|+ ++++.++++++
T Consensus 199 ~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~ 265 (335)
T 2zbw_A 199 KAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALE 265 (335)
T ss_dssp HHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEE
T ss_pred hccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceecc
Confidence 8889999999999 49988764 57776 77 57999999999999999 79998887765
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-28 Score=233.38 Aligned_cols=242 Identities=17% Similarity=0.195 Sum_probs=167.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc-------h---hhhh------h-----hcccc-----cccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LLAS------T-----CVGTL-----EFRS 115 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~-------~---~~~~------~-----~~~~~-----~~~~ 115 (351)
++||+|||||++|+++|..|++.|++|+|||++. +... | ++.. . ..+.. .+..
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGI 81 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHH
Confidence 3799999999999999999999999999999973 2100 0 0000 0 00000 0000
Q ss_pred ccc-------chhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCC
Q 018704 116 VAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (351)
Q Consensus 116 ~~~-------~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~ 188 (351)
+.. .+...........++.++......+ +.+.+.+.. .++. ..++.||+||+|||+.|+.|+++
T Consensus 82 ~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~i--d~~~v~V~~-~~G~------~~~~~~d~lViAtG~~~~~~~~~ 152 (464)
T 2a8x_A 82 AYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFA--DANTLLVDL-NDGG------TESVTFDNAIIATGSSTRLVPGT 152 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEES--SSSEEEEEE-TTSC------CEEEEEEEEEECCCEEECCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEe--cCCeEEEEe-CCCc------eEEEEcCEEEECCCCCCCCCCCC
Confidence 000 0000011122335777776665443 455666643 3341 12899999999999999999888
Q ss_pred CccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 018704 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (351)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~ 268 (351)
|.+..+ .+..+... +.. ..++++|||||.+|+|+|..|.+++ .
T Consensus 153 g~~~~~---~~~~~~~~----------~~~----------~~~~vvViGgG~~g~E~A~~l~~~g--------------~ 195 (464)
T 2a8x_A 153 SLSANV---VTYEEQIL----------SRE----------LPKSIIIAGAGAIGMEFGYVLKNYG--------------V 195 (464)
T ss_dssp CCBTTE---ECHHHHHT----------CSS----------CCSEEEEECCSHHHHHHHHHHHHTT--------------C
T ss_pred CCCceE---EecHHHhh----------ccc----------cCCeEEEECCcHHHHHHHHHHHHcC--------------C
Confidence 875432 23322221 111 2359999999999999999999887 8
Q ss_pred EEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEec-CC--cEEeccEEEEecCCCCc-cc
Q 018704 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILN-DG--TEVPYGLLVWSTGVGPS-TL 338 (351)
Q Consensus 269 ~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~-~g--~~~~~D~vi~a~G~~p~-~~ 338 (351)
+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++.+ .+.+. +| +++++|.||+|+|++|+ ++
T Consensus 196 ~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~ 275 (464)
T 2a8x_A 196 DVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEG 275 (464)
T ss_dssp EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSS
T ss_pred eEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCC
Confidence 99999997 57888999999999999999999999994 9998753 24443 66 67999999999999999 66
Q ss_pred --cccCCCCCCCCC
Q 018704 339 --VKSLDLPKSPGG 350 (351)
Q Consensus 339 --~~~~gl~~~~~G 350 (351)
++.+|++++++|
T Consensus 276 l~~~~~gl~~~~~G 289 (464)
T 2a8x_A 276 YGLDKAGVALTDRK 289 (464)
T ss_dssp SCHHHHTCCBCTTS
T ss_pred CCchhcCCccCCCC
Confidence 677788877655
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-28 Score=233.44 Aligned_cols=244 Identities=20% Similarity=0.253 Sum_probs=170.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhh----hh-----------------hhcccccc---ccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----AS-----------------TCVGTLEF---RSV 116 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~----~~-----------------~~~~~~~~---~~~ 116 (351)
.++||+|||||++|+++|..|++.|++|+|||+++.+...... +. ...+.... .++
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 84 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDL 84 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence 4589999999999999999999999999999998654211000 00 00011000 000
Q ss_pred ccc----------hhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 117 AEP----------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 117 ~~~----------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
... +...........++.++...+..++. +.+.+.. .++. ...+.||+||+|||+.|+.|+
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~~~v~~-~~G~------~~~i~~d~lIiAtGs~p~~p~ 155 (470)
T 1dxl_A 85 AAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSP--SEISVDT-IEGE------NTVVKGKHIIIATGSDVKSLP 155 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEET--TEEEECC-SSSC------CEEEECSEEEECCCEEECCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CEEEEEe-CCCc------eEEEEcCEEEECCCCCCCCCC
Confidence 000 00001112223467777766655554 4555532 3331 127999999999999999998
Q ss_pred CCCccc-cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 187 IHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 187 i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
++|.+. .++ +..+.. .+... .++++|||||.+|+|+|..|.+++
T Consensus 156 ~~g~~~~~v~---~~~~~~----------~~~~~----------~~~vvViGgG~~g~e~A~~l~~~g------------ 200 (470)
T 1dxl_A 156 GVTIDEKKIV---SSTGAL----------ALSEI----------PKKLVVIGAGYIGLEMGSVWGRIG------------ 200 (470)
T ss_dssp TBCCCSSSEE---CHHHHT----------TCSSC----------CSEEEESCCSHHHHHHHHHHHHHT------------
T ss_pred CCCCCcccEE---eHHHhh----------hhhhc----------CCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 888753 232 222211 11222 359999999999999999999887
Q ss_pred CccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEec---CC--cEEeccEEEEecCCC
Q 018704 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILN---DG--TEVPYGLLVWSTGVG 334 (351)
Q Consensus 266 ~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~---~g--~~~~~D~vi~a~G~~ 334 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++.+ .+.+. +| +++++|.||+|+|++
T Consensus 201 --~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~ 278 (470)
T 1dxl_A 201 --SEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRT 278 (470)
T ss_dssp --CEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEE
T ss_pred --CcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCC
Confidence 899999997 57788999999999999999999999995 9999763 24443 45 679999999999999
Q ss_pred Cc-cc--cccCCCCCCCCC
Q 018704 335 PS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 335 p~-~~--~~~~gl~~~~~G 350 (351)
|+ ++ ++.+|++++++|
T Consensus 279 p~~~~l~~~~~gl~~~~~G 297 (470)
T 1dxl_A 279 PFTSGLNLDKIGVETDKLG 297 (470)
T ss_dssp ECCTTSCCTTTTCCBCSSS
T ss_pred cCCCCCCchhcCCccCCCC
Confidence 99 66 678888887665
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=228.90 Aligned_cols=238 Identities=21% Similarity=0.290 Sum_probs=170.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhh----hh---------------h-hcccc------cccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----AS---------------T-CVGTL------EFRS 115 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~----~~---------------~-~~~~~------~~~~ 115 (351)
.+||+|||||++||++|+.|++.|++|+|||++. +...... +. . ..+.. .+..
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~-~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 104 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEEYR-IGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWEK 104 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCCC-CCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHHH
Confidence 5799999999999999999999999999999943 2111000 00 0 00000 0000
Q ss_pred c-------ccchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcC-CCCC
Q 018704 116 V-------AEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS-TFGI 187 (351)
Q Consensus 116 ~-------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~-~p~i 187 (351)
+ ...+...........++.++...+..++. +.+.+. .++. .+.||+||+|||+.|. .|.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~v~--~~~~--------~~~~d~lviAtG~~p~~~p~i 172 (484)
T 3o0h_A 105 LVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDE--HTLELS--VTGE--------RISAEKILIATGAKIVSNSAI 172 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEET--TTCC--------EEEEEEEEECCCEEECCC--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEe--cCCe--------EEEeCEEEEccCCCcccCCCC
Confidence 0 00111111222334578888887777764 455542 1444 8999999999999999 8999
Q ss_pred CCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 018704 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (351)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~ 267 (351)
||.+ .+++..++.. +... .++++|||+|.+|+|+|..+.+++
T Consensus 173 ~G~~-~~~~~~~~~~-------------~~~~----------~~~v~ViGgG~~g~e~A~~l~~~g-------------- 214 (484)
T 3o0h_A 173 KGSD-LCLTSNEIFD-------------LEKL----------PKSIVIVGGGYIGVEFANIFHGLG-------------- 214 (484)
T ss_dssp BTGG-GSBCTTTGGG-------------CSSC----------CSEEEEECCSHHHHHHHHHHHHTT--------------
T ss_pred CCcc-ccccHHHHHh-------------HHhc----------CCcEEEECcCHHHHHHHHHHHHcC--------------
Confidence 9974 3433333321 1222 359999999999999999999887
Q ss_pred cEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCCCCc-cc--
Q 018704 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TL-- 338 (351)
Q Consensus 268 ~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~-~~-- 338 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++.+ .+.+.+|+++++|.||+|+|++|+ .+
T Consensus 215 ~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~ 294 (484)
T 3o0h_A 215 VKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLG 294 (484)
T ss_dssp CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTCC
T ss_pred CeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCC
Confidence 899999997 57888999999999999999999999995 9988754 578889989999999999999999 55
Q ss_pred cccCCCCCCCCC
Q 018704 339 VKSLDLPKSPGG 350 (351)
Q Consensus 339 ~~~~gl~~~~~G 350 (351)
++.+|++++++|
T Consensus 295 l~~~g~~~~~~G 306 (484)
T 3o0h_A 295 LERAGVKVNEFG 306 (484)
T ss_dssp HHHHTCCBCTTS
T ss_pred hhhcCceECCCC
Confidence 567788877766
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-28 Score=231.75 Aligned_cols=237 Identities=17% Similarity=0.236 Sum_probs=168.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchh----hhh-----------hh-----ccc------ccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS-----------TC-----VGT------LEFRS 115 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~----~~~-----------~~-----~~~------~~~~~ 115 (351)
++||+|||||++||++|+.|++.|++|+|||+.. +..... .+. .. .+. ..+..
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~~-~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFR-YGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAK 83 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHHH
Confidence 5899999999999999999999999999999943 211000 000 00 000 00000
Q ss_pred cc-------cchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcC-CCCC
Q 018704 116 VA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS-TFGI 187 (351)
Q Consensus 116 ~~-------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~-~p~i 187 (351)
+. ..+......+....++.++...+..++ .+.+.+. .++. .+.||+||+|||+.|. .|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~--~~~v~~~--~~~~--------~~~~d~lviAtG~~p~~~p~i 151 (463)
T 4dna_A 84 LVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAG--PNTVKLL--ASGK--------TVTAERIVIAVGGHPSPHDAL 151 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESS--SSEEEET--TTTE--------EEEEEEEEECCCEEECCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEee--CCEEEEe--cCCe--------EEEeCEEEEecCCCcccCCCC
Confidence 00 011111112223346777777666654 3455542 2344 8999999999999999 9999
Q ss_pred CCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 018704 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (351)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~ 267 (351)
||.+ .++ +..+. +.+... .++++|||+|.+|+|+|..+.+++
T Consensus 152 ~G~~-~~~---~~~~~----------~~~~~~----------~~~v~ViGgG~~g~e~A~~l~~~g-------------- 193 (463)
T 4dna_A 152 PGHE-LCI---TSNEA----------FDLPAL----------PESILIAGGGYIAVEFANIFHGLG-------------- 193 (463)
T ss_dssp TTGG-GCB---CHHHH----------TTCSSC----------CSEEEEECCSHHHHHHHHHHHHTT--------------
T ss_pred CCcc-ccc---cHHHH----------hhhhcC----------CCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 9974 222 22221 112222 359999999999999999999887
Q ss_pred cEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC-----eEE-ecCCcEEeccEEEEecCCCCc-cc
Q 018704 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLI-LNDGTEVPYGLLVWSTGVGPS-TL 338 (351)
Q Consensus 268 ~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~-----~v~-~~~g~~~~~D~vi~a~G~~p~-~~ 338 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++.+ .|. +.+|+ +++|.||+|+|++|+ .+
T Consensus 194 ~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~ 272 (463)
T 4dna_A 194 VKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNG 272 (463)
T ss_dssp CEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTT
T ss_pred CeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCC
Confidence 899999997 57788999999999999999999999995 9888653 577 77887 999999999999999 55
Q ss_pred --cccCCCCCCCCC
Q 018704 339 --VKSLDLPKSPGG 350 (351)
Q Consensus 339 --~~~~gl~~~~~G 350 (351)
++.+|++++++|
T Consensus 273 l~l~~~g~~~~~~G 286 (463)
T 4dna_A 273 LGLEAAGVRTNELG 286 (463)
T ss_dssp SSTGGGTCCBCTTS
T ss_pred CCccccCceECCCC
Confidence 678888888776
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=217.06 Aligned_cols=237 Identities=14% Similarity=0.076 Sum_probs=161.3
Q ss_pred CcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCccccchhhhhhhccccccc-cc-ccchhccchhhhcCCCeEEEEEE
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVFTPLLASTCVGTLEFR-SV-AEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
+||+|||||++|+++|..|++.|+ +|+|||++..... ..........+.+. .+ ...+...........++.++..+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ 80 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQ-ITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMTA 80 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCG-GGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEECSC
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcc-cccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence 689999999999999999999999 9999998632110 00000000001110 00 11122222223344577777788
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcccc---ccccCCHHHHHHHHHHHHHhhhc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
|+.++.+.+.+.+.. .++. .+.||+||+|||+.|+.|++||.++. ..+. .... ...
T Consensus 81 v~~i~~~~~~~~v~~-~~g~--------~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~--~~~~---~~~------- 139 (311)
T 2q0l_A 81 VQRVSKKDSHFVILA-EDGK--------TFEAKSVIIATGGSPKRTGIKGESEYWGKGVST--CATC---DGF------- 139 (311)
T ss_dssp EEEEEEETTEEEEEE-TTSC--------EEEEEEEEECCCEEECCCCCBTHHHHBTTTEES--CHHH---HGG-------
T ss_pred EEEEEEcCCEEEEEE-cCCC--------EEECCEEEECCCCCCCCCCCCChhhccCCcEEE--eecC---Chh-------
Confidence 999988777666543 4555 89999999999999999999987421 1111 1111 110
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhh-
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS- 295 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~- 295 (351)
....++|+|||+|.+|+|+|..|.+.+ .+|+++++.+.+. .++. +.+.+.
T Consensus 140 ----------~~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~~----~~~~l~~ 190 (311)
T 2q0l_A 140 ----------FYKNKEVAVLGGGDTAVEEAIYLANIC--------------KKVYLIHRRDGFR-CAPI----TLEHAKN 190 (311)
T ss_dssp ----------GGTTSEEEEECCSHHHHHHHHHHHTTS--------------SEEEEECSSSSCC-SCHH----HHHHHHT
T ss_pred ----------hcCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEeeCCccC-CCHH----HHHHHhh
Confidence 023469999999999999999998776 8999999975443 3333 333444
Q ss_pred hcCcEEEcCe-EEEEeCC-----eEEec---CCc--EEeccEEEEecCCCCc-cccccCC----CCCCCCC
Q 018704 296 KSGVRLVRGI-VKDVDSQ-----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLD----LPKSPGG 350 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~~-----~v~~~---~g~--~~~~D~vi~a~G~~p~-~~~~~~g----l~~~~~G 350 (351)
+.||+++.+. ++++..+ ++.+. +|+ ++++|.||+|+|++|+ ++++.++ ++++++|
T Consensus 191 ~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g 261 (311)
T 2q0l_A 191 NDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYG 261 (311)
T ss_dssp CTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTS
T ss_pred CCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCC
Confidence 4799999995 8888653 46775 675 6899999999999999 8888875 7776655
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-28 Score=218.40 Aligned_cols=243 Identities=15% Similarity=0.163 Sum_probs=156.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchh--hhhh--hcccccccc--cccchhccchhhhcCCCeEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL--LAST--CVGTLEFRS--VAEPIARIQPAISREPGSYF 135 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~--~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 135 (351)
.+||+|||||||||+||.+|++.|++|+|||+.......+. ++.. ..+.+.+.. ....+...........+..+
T Consensus 4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~ 83 (314)
T 4a5l_A 4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTI 83 (314)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEE
Confidence 48999999999999999999999999999998754222110 0000 000011100 00112222222334446667
Q ss_pred EEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcccc-ccccCCHHHHHHHHHHHHHhh
Q 018704 136 FLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN-ATFLREVHHAQEIRRKLLLNL 214 (351)
Q Consensus 136 ~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 214 (351)
....+..+......+...+ .++. ++.||+||||||+.|+.|++||.+.. ..............
T Consensus 84 ~~~~v~~~~~~~~~~~~~~-~~~~--------~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~------- 147 (314)
T 4a5l_A 84 ITETIDHVDFSTQPFKLFT-EEGK--------EVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAV------- 147 (314)
T ss_dssp ECCCEEEEECSSSSEEEEE-TTCC--------EEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTS-------
T ss_pred EEeEEEEeecCCCceEEEE-CCCe--------EEEEeEEEEcccccccccCCCccccccccceeeehhhhhhh-------
Confidence 6777777777666555433 3454 89999999999999999999998632 12222222111100
Q ss_pred hccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHh
Q 018704 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294 (351)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l 294 (351)
...+.++++|||||++|+|+|..|.++| .+|++++|...... ... ...+..
T Consensus 148 -----------~~~~~~~vvViGgG~ig~e~A~~l~~~G--------------~~Vt~v~~~~~~~~-~~~---~~~~~~ 198 (314)
T 4a5l_A 148 -----------PIFRNKVLMVVGGGDAAMEEALHLTKYG--------------SKVIILHRRDAFRA-SKT---MQERVL 198 (314)
T ss_dssp -----------GGGTTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCS-CHH---HHHHHH
T ss_pred -----------hhcCCCeEEEECCChHHHHHHHHHHHhC--------------Ceeeeecccccccc-cch---hhhhhh
Confidence 1134469999999999999999999887 89999998643221 122 233445
Q ss_pred hhcCcEEEcCe-EEEEeC-----CeEEe-----cCCcEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 295 SKSGVRLVRGI-VKDVDS-----QKLIL-----NDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 295 ~~~gV~~~~~~-v~~v~~-----~~v~~-----~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
...+++.+... +.++.. +++.+ .+++++++|.|++|+|++|+ ++++. +++++++|
T Consensus 199 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~-~~~~~~~G 265 (314)
T 4a5l_A 199 NHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGG-QVKTADDG 265 (314)
T ss_dssp TCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTT-SSCBCTTS
T ss_pred cccceeeEeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecccccChhHhcc-cceEcCCe
Confidence 56678888774 666543 23333 24567999999999999999 77653 56666665
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-28 Score=230.35 Aligned_cols=239 Identities=18% Similarity=0.190 Sum_probs=167.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchh----hhh------------h---hcccc------cccccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS------------T---CVGTL------EFRSVA 117 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~----~~~------------~---~~~~~------~~~~~~ 117 (351)
+||+|||||+||+++|..|++.|++|+|||+++.+..... .+. . ..+.. ++..+.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPALM 81 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHHH
Confidence 6999999999999999999999999999999865421100 000 0 00110 000000
Q ss_pred cc-------hhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCc
Q 018704 118 EP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV 190 (351)
Q Consensus 118 ~~-------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~ 190 (351)
.. +...........++.++...+..+ +.+.+.+.. ++. .+.||+||+|||+.|..|+++|.
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i--~~~~~~v~~--~g~--------~~~~d~lviAtG~~p~~~~~~g~ 149 (455)
T 2yqu_A 82 AHKDKVVQANTQGVEFLFKKNGIARHQGTARFL--SERKVLVEE--TGE--------ELEARYILIATGSAPLIPPWAQV 149 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEEESCEEES--SSSEEEETT--TCC--------EEEEEEEEECCCEEECCCTTBCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEe--cCCeEEEee--CCE--------EEEecEEEECCCCCCCCCCCCCC
Confidence 00 000011122234677777665544 345666533 344 89999999999999999988886
Q ss_pred cc-cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE
Q 018704 191 KE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH 269 (351)
Q Consensus 191 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~ 269 (351)
+. .+++ ..+. +.+... .++++|||||.+|+|+|..|.+++ .+
T Consensus 150 ~~~~v~~---~~~~----------~~~~~~----------~~~vvIiGgG~~g~e~A~~l~~~g--------------~~ 192 (455)
T 2yqu_A 150 DYERVVT---STEA----------LSFPEV----------PKRLIVVGGGVIGLELGVVWHRLG--------------AE 192 (455)
T ss_dssp CSSSEEC---HHHH----------TCCSSC----------CSEEEEECCSHHHHHHHHHHHHTT--------------CE
T ss_pred CcCcEec---hHHh----------hccccC----------CCeEEEECCCHHHHHHHHHHHHcC--------------CE
Confidence 53 2222 2221 111122 359999999999999999999877 89
Q ss_pred EEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecCCcEEeccEEEEecCCCCc-cc--cc
Q 018704 270 VTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS-TL--VK 340 (351)
Q Consensus 270 v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~g~~~~~D~vi~a~G~~p~-~~--~~ 340 (351)
|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++. ++ +.+.+|+++++|.||+|+|.+|+ ++ ++
T Consensus 193 V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~ 272 (455)
T 2yqu_A 193 VIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLE 272 (455)
T ss_dssp EEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCGG
T ss_pred EEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCChh
Confidence 9999997 46788899999999999999999999994 988864 33 44568889999999999999999 55 67
Q ss_pred cCCCCCCCCC
Q 018704 341 SLDLPKSPGG 350 (351)
Q Consensus 341 ~~gl~~~~~G 350 (351)
.+|++++++|
T Consensus 273 ~~g~~~~~~g 282 (455)
T 2yqu_A 273 NAGLSTDERG 282 (455)
T ss_dssp GGTCCCCTTS
T ss_pred hcCCccCCCC
Confidence 7788877655
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=229.26 Aligned_cols=244 Identities=19% Similarity=0.244 Sum_probs=167.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhc---------------------------cccc-
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV---------------------------GTLE- 112 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~---------------------------~~~~- 112 (351)
+++||+|||||++|+++|+.|++.|++|+|||+++.......+.+.|. +...
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~ 81 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG 81 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 358999999999999999999999999999999862211100111110 0000
Q ss_pred --ccccc----------cchhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC
Q 018704 113 --FRSVA----------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (351)
Q Consensus 113 --~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 180 (351)
..++. ..+......+....++.++...+..++. +.+.+.. .++. ...+.||+||||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~-~~g~------~~~~~~d~lvlAtG~ 152 (476)
T 3lad_A 82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAG--KKVEVTA-ADGS------SQVLDTENVILASGS 152 (476)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECST--TCEEEEC-TTSC------EEEECCSCEEECCCE
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CEEEEEc-CCCc------eEEEEcCEEEEcCCC
Confidence 00000 0000111122233467888877776554 3444432 3332 237999999999999
Q ss_pred CcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHh
Q 018704 181 EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (351)
Q Consensus 181 ~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~ 259 (351)
.|..|+.++.+ ..+++. .+. +.+... .++++|||+|++|+|+|..|.+++
T Consensus 153 ~p~~~~~~~~~~~~v~~~---~~~----------~~~~~~----------~~~v~ViGgG~~g~e~A~~l~~~g------ 203 (476)
T 3lad_A 153 KPVEIPPAPVDQDVIVDS---TGA----------LDFQNV----------PGKLGVIGAGVIGLELGSVWARLG------ 203 (476)
T ss_dssp EECCCTTSCCCSSSEEEH---HHH----------TSCSSC----------CSEEEEECCSHHHHHHHHHHHHTT------
T ss_pred CCCCCCCCCCCcccEEec---hhh----------hccccC----------CCeEEEECCCHHHHHHHHHHHHcC------
Confidence 98877555543 223322 111 112222 359999999999999999999887
Q ss_pred hhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCC---cEEeccEEEEe
Q 018704 260 RYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDG---TEVPYGLLVWS 330 (351)
Q Consensus 260 ~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g---~~~~~D~vi~a 330 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++.+ .+.+.++ +++++|.||+|
T Consensus 204 --------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a 275 (476)
T 3lad_A 204 --------AEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVA 275 (476)
T ss_dssp --------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEEC
T ss_pred --------CcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEe
Confidence 899999997 57888999999999999999999999994 8888742 3566654 67999999999
Q ss_pred cCCCCc-c--ccccCCCCCCCCC
Q 018704 331 TGVGPS-T--LVKSLDLPKSPGG 350 (351)
Q Consensus 331 ~G~~p~-~--~~~~~gl~~~~~G 350 (351)
+|++|+ + .++.+|++++++|
T Consensus 276 ~G~~p~~~~l~~~~~g~~~~~~G 298 (476)
T 3lad_A 276 VGRRPVTTDLLAADSGVTLDERG 298 (476)
T ss_dssp SCEEECCTTCCSSCCSCCBCTTS
T ss_pred eCCcccCCCCCccccCccccCCC
Confidence 999999 4 3677888887766
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-28 Score=229.56 Aligned_cols=233 Identities=12% Similarity=0.130 Sum_probs=156.8
Q ss_pred CcEEEECCchhHHHHHHhhhc---cCce---EEEEcCCCccccchhhh------------------hhhcc----ccccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDT---SLYD---VVCVSPRNHMVFTPLLA------------------STCVG----TLEFR 114 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~---~g~~---v~vie~~~~~~~~~~~~------------------~~~~~----~~~~~ 114 (351)
+||+|||||++||++|..|++ .|++ |+|||+++......... ..... ...+.
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 699999999999999999999 9999 99999986542111000 00000 00000
Q ss_pred cc---------------ccchhccchhhhcCCCe---EEEEEEeeeEeCCCC--EEEEEeec--CccccCCCceeEeecc
Q 018704 115 SV---------------AEPIARIQPAISREPGS---YFFLSHCAGIDTDNH--VVHCETVT--DELRTLEPWKFKISYD 172 (351)
Q Consensus 115 ~~---------------~~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~--~v~~~~~~--~~~~~~~~~~~~~~~d 172 (351)
.+ ...+.++...+....++ ..+..+|+.++...+ .|.++..+ ++. ..++.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~------~~~~~~d 156 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDT------IYSEEFD 156 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTE------EEEEEES
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCc------eEEEEcC
Confidence 00 01111111112222233 344678888886654 55544322 231 1378999
Q ss_pred EEEEecC--CCcCCCCCCCcccc---ccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHH
Q 018704 173 KLVIALG--AEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSG 247 (351)
Q Consensus 173 ~lviAtG--~~p~~p~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~ 247 (351)
+||+||| +.|+.|.+||.+.. .++...+.+.. ...+|+|+|||+|++|+|+|.
T Consensus 157 ~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~----------------------~~~~k~VvVVG~G~sg~eiA~ 214 (464)
T 2xve_A 157 YVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDAL----------------------EFKDKTVLLVGSSYSAEDIGS 214 (464)
T ss_dssp EEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGG----------------------GGTTSEEEEECCSTTHHHHHH
T ss_pred EEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHh----------------------HcCCCEEEEEcCCCCHHHHHH
Confidence 9999999 78999999997531 33333222111 123469999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCCCcHHHHHHHHHHhhhcCcEEEcCeEEEEeCCeEEecCCcEEeccE
Q 018704 248 ELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGL 326 (351)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~~~g~~~~~D~ 326 (351)
.|.+.+ .+|+++++.. +++.. ...||+++ ..|+++++++|++.||+++++|.
T Consensus 215 ~l~~~g--------------~~V~li~~~~~~~~~~------------~~~~V~~~-~~V~~i~~~~V~~~dG~~i~~D~ 267 (464)
T 2xve_A 215 QCYKYG--------------AKKLISCYRTAPMGYK------------WPENWDER-PNLVRVDTENAYFADGSSEKVDA 267 (464)
T ss_dssp HHHHTT--------------CSEEEEECSSCCCCCC------------CCTTEEEC-SCEEEECSSEEEETTSCEEECSE
T ss_pred HHHHhC--------------CeEEEEEECCCCCCCC------------CCCceEEc-CCeEEEeCCEEEECCCCEEeCCE
Confidence 999887 8999999864 33321 02478887 56999988999999999999999
Q ss_pred EEEecCCCCc-ccccc-CCCCCCCCC
Q 018704 327 LVWSTGVGPS-TLVKS-LDLPKSPGG 350 (351)
Q Consensus 327 vi~a~G~~p~-~~~~~-~gl~~~~~G 350 (351)
||+|||++|+ +|+.. +|++++++|
T Consensus 268 Vi~atG~~p~~~~l~~~~gl~~~~~~ 293 (464)
T 2xve_A 268 IILCTGYIHHFPFLNDDLRLVTNNRL 293 (464)
T ss_dssp EEECCCBCCCCTTBCTTTCCCCCSSS
T ss_pred EEECCCCCCCCCCcCcccccccCCCc
Confidence 9999999999 88876 688876653
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=228.85 Aligned_cols=245 Identities=21% Similarity=0.220 Sum_probs=165.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhh----h-----------------hhccccc---cccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA----S-----------------TCVGTLE---FRSV 116 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~----~-----------------~~~~~~~---~~~~ 116 (351)
+++||+|||||+||++||..|++.|++|+|||+++.+....... . ...+... ..++
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 103 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNL 103 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCH
Confidence 45899999999999999999999999999999876543211000 0 0000000 0000
Q ss_pred cc----------chhccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 117 AE----------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 117 ~~----------~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
.. .+...........++.++...+..++ .+.+.+.. .++. ...+.||+||||||+.| +.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~-~~g~------~~~~~~d~lViATGs~p--~~ 172 (491)
T 3urh_A 104 QKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLG--QGKVSVTN-EKGE------EQVLEAKNVVIATGSDV--AG 172 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECS--SSEEEEEC-TTSC------EEEEECSEEEECCCEEC--CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEec--CCEEEEEe-CCCc------eEEEEeCEEEEccCCCC--CC
Confidence 00 00011112233456778777766554 45555543 3332 23899999999999885 45
Q ss_pred CCCccc--cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 187 IHGVKE--NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 187 i~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
+||.++ ....+.+..+. +.+... .++++|||||.+|+|+|..|.+++
T Consensus 173 ipg~~~~~~~~~~~~~~~~----------~~~~~~----------~~~vvViGgG~~g~E~A~~l~~~g----------- 221 (491)
T 3urh_A 173 IPGVEVAFDEKTIVSSTGA----------LALEKV----------PASMIVVGGGVIGLELGSVWARLG----------- 221 (491)
T ss_dssp BTTBCCCCCSSSEECHHHH----------TSCSSC----------CSEEEEECCSHHHHHHHHHHHHHT-----------
T ss_pred CCCcccccCCeeEEehhHh----------hhhhhc----------CCeEEEECCCHHHHHHHHHHHHcC-----------
Confidence 676631 11112222221 112222 359999999999999999999887
Q ss_pred CCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecC---C--cEEeccEEEEecCC
Q 018704 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILND---G--TEVPYGLLVWSTGV 333 (351)
Q Consensus 265 ~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~---g--~~~~~D~vi~a~G~ 333 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++. + .+.+.+ | +++++|.||+|+|+
T Consensus 222 ---~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~ 298 (491)
T 3urh_A 222 ---AKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGR 298 (491)
T ss_dssp ---CEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCC
T ss_pred ---CEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCC
Confidence 899999997 57888999999999999999999999994 888864 3 255542 5 57999999999999
Q ss_pred CCc-cc--cccCCCCCCCCC
Q 018704 334 GPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 334 ~p~-~~--~~~~gl~~~~~G 350 (351)
+|+ ++ ++.+|++++++|
T Consensus 299 ~p~~~~l~l~~~g~~~~~~G 318 (491)
T 3urh_A 299 KPSTDGLGLAKAGVVLDSRG 318 (491)
T ss_dssp EECCTTSCHHHHTCCBCTTS
T ss_pred ccCCCccCchhcCceECCCC
Confidence 999 55 567788877766
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-28 Score=217.92 Aligned_cols=242 Identities=14% Similarity=0.068 Sum_probs=160.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEE-EcCCCccccchhhhhhhccccccc--ccccchhccchhhhcCCCeEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVC-VSPRNHMVFTPLLASTCVGTLEFR--SVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~v-ie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
.++||+|||||+|||++|..|++.|++|+| +|+.. ..............+.+. .....+...........++.++.
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 81 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGM-PGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEM 81 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSS-TTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEEC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCC-CCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEE
Confidence 457999999999999999999999999999 99843 211100000000011111 01122233333344555778877
Q ss_pred EEeeeEeCCC--CEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhh
Q 018704 138 SHCAGIDTDN--HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLM 215 (351)
Q Consensus 138 ~~v~~i~~~~--~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (351)
.+|..+ .+. +.+.+. ...+. .+.||+||+|||..|+.|.+||.+... ...+.........
T Consensus 82 ~~v~~i-~~~~~~~~~v~-~~~~~--------~~~~d~lvlAtG~~~~~~~~~g~~~~~--~~~~~~~~~~~~~------ 143 (315)
T 3r9u_A 82 VGVEQI-LKNSDGSFTIK-LEGGK--------TELAKAVIVCTGSAPKKAGFKGEDEFF--GKGVSTCATCDGF------ 143 (315)
T ss_dssp CCEEEE-EECTTSCEEEE-ETTSC--------EEEEEEEEECCCEEECCCCCBTTTTTB--TTTEESCHHHHGG------
T ss_pred EEEEEE-ecCCCCcEEEE-EecCC--------EEEeCEEEEeeCCCCCCCCCCChhhcC--CCeEEeeeccccc------
Confidence 788888 554 556521 12232 789999999999999999999975311 0111111111111
Q ss_pred ccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhh
Q 018704 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS 295 (351)
Q Consensus 216 ~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~ 295 (351)
....++++|||+|.+|+|+|..|.+.+ .+|+++++.+.+.. ++. .+.+.++
T Consensus 144 -----------~~~~~~v~viG~g~~~~e~a~~l~~~g--------------~~v~~~~~~~~~~~-~~~---~~~~~~~ 194 (315)
T 3r9u_A 144 -----------FYKNKEVAVLGGGDTALEEALYLANIC--------------SKIYLIHRRDEFRA-APS---TVEKVKK 194 (315)
T ss_dssp -----------GGTTSEEEEECCBHHHHHHHHHHHTTS--------------SEEEEECSSSSCBS-CHH---HHHHHHH
T ss_pred -----------ccCcCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEeCCCCCC-CHH---HHHHHHh
Confidence 023469999999999999999998776 89999999864432 233 2344556
Q ss_pred hcCcEEEcCe-EEEEeCC-----eEEec--CCc--EEeccEEEEecCCCCc-ccccc---CC-CCCCCCC
Q 018704 296 KSGVRLVRGI-VKDVDSQ-----KLILN--DGT--EVPYGLLVWSTGVGPS-TLVKS---LD-LPKSPGG 350 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~~-----~v~~~--~g~--~~~~D~vi~a~G~~p~-~~~~~---~g-l~~~~~G 350 (351)
+.||+++.+. |+++..+ ++++. +|+ ++++|.||+|+|++|+ .+++. +| ++++++|
T Consensus 195 ~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g 264 (315)
T 3r9u_A 195 NEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGG 264 (315)
T ss_dssp CTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTS
T ss_pred cCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCC
Confidence 8899999994 8888653 36665 775 7899999999999999 66665 55 8777665
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=228.58 Aligned_cols=238 Identities=17% Similarity=0.179 Sum_probs=165.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcccc---chhhhh----------------hhccccc--ccccccch
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF---TPLLAS----------------TCVGTLE--FRSVAEPI 120 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~---~~~~~~----------------~~~~~~~--~~~~~~~~ 120 (351)
++||+|||||+||+++|..|++.|++|+|||+++.... ....+. ...+... ..++...+
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 85 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGEVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKLG 85 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHHHH
Confidence 47999999999999999999999999999999862100 000000 0001100 00010000
Q ss_pred h----------ccchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC-CCC
Q 018704 121 A----------RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG-IHG 189 (351)
Q Consensus 121 ~----------~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~-i~g 189 (351)
. ..........++.++...+..++ .+.+.+. ++ ++.||+||||||+.|+.|+ +++
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~v~----g~--------~~~~d~lViATGs~p~~p~gi~~ 151 (464)
T 2eq6_A 86 GWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVG--PKEVEVG----GE--------RYGAKSLILATGSEPLELKGFPF 151 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEE--TTEEEET----TE--------EEEEEEEEECCCEEECCBTTBCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcc--CCEEEEc----cE--------EEEeCEEEEcCCCCCCCCCCCCC
Confidence 0 00111233457888777666665 3566552 44 7999999999999998885 776
Q ss_pred ccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE
Q 018704 190 VKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH 269 (351)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~ 269 (351)
. ..++ +..++..+ .. ...++++|||||.+|+|+|..|.+++ .+
T Consensus 152 ~-~~v~---~~~~~~~l----------~~---------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~ 194 (464)
T 2eq6_A 152 G-EDVW---DSTRALKV----------EE---------GLPKRLLVIGGGAVGLELGQVYRRLG--------------AE 194 (464)
T ss_dssp S-SSEE---CHHHHTCG----------GG---------CCCSEEEEECCSHHHHHHHHHHHHTT--------------CE
T ss_pred C-CcEE---cHHHHHhh----------hh---------hcCCEEEEECCCHHHHHHHHHHHHCC--------------Ce
Confidence 2 2222 33332211 11 02259999999999999999999877 89
Q ss_pred EEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEec-C--Cc--EEeccEEEEecCCCCc-c
Q 018704 270 VTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILN-D--GT--EVPYGLLVWSTGVGPS-T 337 (351)
Q Consensus 270 v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~-~--g~--~~~~D~vi~a~G~~p~-~ 337 (351)
|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++. + .+.+. + |+ ++++|.||+|+|++|+ +
T Consensus 195 Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 274 (464)
T 2eq6_A 195 VTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTE 274 (464)
T ss_dssp EEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCT
T ss_pred EEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCC
Confidence 9999997 57788899999999999999999999994 988864 2 35555 6 76 7999999999999999 5
Q ss_pred c--cccCCCCCCCCC
Q 018704 338 L--VKSLDLPKSPGG 350 (351)
Q Consensus 338 ~--~~~~gl~~~~~G 350 (351)
+ ++.+|++++++|
T Consensus 275 ~l~l~~~g~~~~~~G 289 (464)
T 2eq6_A 275 GLGLEKAGVKVDERG 289 (464)
T ss_dssp TSSHHHHTCCBCTTS
T ss_pred CCChhhcCceecCCC
Confidence 4 567788776655
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=222.04 Aligned_cols=249 Identities=17% Similarity=0.223 Sum_probs=184.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
.++|||||||+||++||.+|++.+ .+|+|||+++.+.+.|.+.....+......+...+..+. ..++.++.++
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~-----~~gv~~i~~~ 76 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLR-----AHGIQVVHDS 76 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHH-----HTTCEEECSC
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHH-----HCCCEEEEeE
Confidence 368999999999999999998854 689999999999999988887777766665544443332 2478999999
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcccc-----ccccCCHHHHHHHHHHHHHhh
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN-----ATFLREVHHAQEIRRKLLLNL 214 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~-----~~~~~~~~~~~~~~~~~~~~~ 214 (351)
|+.||++.+.+.+ .++. ++.||+||||||+.+.++.+||.++. .+.+...+++..+++.+...
T Consensus 77 v~~id~~~~~v~~---~~g~--------~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~- 144 (401)
T 3vrd_B 77 ALGIDPDKKLVKT---AGGA--------EFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESM- 144 (401)
T ss_dssp EEEEETTTTEEEE---TTSC--------EEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHS-
T ss_pred EEEEEccCcEEEe---cccc--------eeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhc-
Confidence 9999999999876 4666 89999999999999999999998632 24466777888777766321
Q ss_pred hccCCCCCCHhhhcccCeEEEECCC-------hHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---CCCcH
Q 018704 215 MLSDVPGISEEEKSRLLHCVVVGGG-------PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFDD 284 (351)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~v~VvGgG-------~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---~~~~~ 284 (351)
.. ...+|+++| ..+.+++.+++.+. ++. ....+|+++++.+.+ +.+++
T Consensus 145 -------------~~-~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~----~~~----~~~~~v~i~~~~~~~~~~~~~~~ 202 (401)
T 3vrd_B 145 -------------DD-GGVVIIAPPAPPFRCPPGPYERASQIAHYL----KAH----KSKSKVIILDNSQTFSKQAQFTK 202 (401)
T ss_dssp -------------CT-TCEEEEECCSSSCBCTTHHHHHHHHHHHHH----HHH----CTTCEEEEECSSSSCTTHHHHHH
T ss_pred -------------cc-CCcEEEecCCccEEeehHHHHHHHHHHHHH----Hhc----CCCCEEEEEcccccccccccccH
Confidence 11 234444433 34455555554322 111 233789999987533 33556
Q ss_pred HHHHHHHHHhhhcCcEEEcCe-EEEEeC----CeEEecCCcEEeccEEEEecCCCCccccccCCCCCCCCC
Q 018704 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS----QKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG 350 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~-v~~v~~----~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~~~~~G 350 (351)
.+.+.+.+.+++.||+++.+. +..++. ..+.+.+|+++++|.|++++|.+|+++++..+|. +++|
T Consensus 203 ~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~gl~-~~~G 272 (401)
T 3vrd_B 203 GWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQRAGKIAQSASLT-NDSG 272 (401)
T ss_dssp HHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCEEECHHHHHTTCC-CTTS
T ss_pred HHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCcCCchhHhhcccc-ccCC
Confidence 666667777889999999994 655542 3788999999999999999999999888888884 5555
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=234.16 Aligned_cols=243 Identities=17% Similarity=0.246 Sum_probs=164.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCC-Ccc---ccchhhhhhh--------------------------cc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR-NHM---VFTPLLASTC--------------------------VG 109 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~-~~~---~~~~~~~~~~--------------------------~~ 109 (351)
...+||+|||||||||+||.+|++.|++|+|||+. +.. .|. +.+.| .+
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~--~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g 182 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWG--LGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG 182 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCC--TTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccc--cCceEeccCCCchHHHHHHHHHHHHHhhHHhCC
Confidence 34589999999999999999999999999999973 210 000 01100 00
Q ss_pred cc--c---ccccc---cchhccc-------hhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEE
Q 018704 110 TL--E---FRSVA---EPIARIQ-------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKL 174 (351)
Q Consensus 110 ~~--~---~~~~~---~~~~~~~-------~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~l 174 (351)
.. . ..++. ..+.... .......++.++......++. +.+.+.+ .+|+ ...+.||+|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~--~~v~v~~-~~g~------~~~~~~d~l 253 (598)
T 2x8g_A 183 WSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISP--HEVQITD-KNQK------VSTITGNKI 253 (598)
T ss_dssp CCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEET--TEEEEEC-TTCC------EEEEEEEEE
T ss_pred ccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEEe-CCCC------eEEEEeCEE
Confidence 00 0 00000 0111000 001123467777666665654 3454433 2331 127899999
Q ss_pred EEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHH
Q 018704 175 VIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM 254 (351)
Q Consensus 175 viAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~ 254 (351)
|||||+.|+.|++||.++.+.+. .+. +.+...| ++++|||||++|+|+|..|.+++
T Consensus 254 viAtGs~p~~p~i~G~~~~~~~~---~~~----------~~~~~~~----------~~vvViGgG~~g~E~A~~l~~~g- 309 (598)
T 2x8g_A 254 ILATGERPKYPEIPGAVEYGITS---DDL----------FSLPYFP----------GKTLVIGASYVALECAGFLASLG- 309 (598)
T ss_dssp EECCCEEECCCSSTTHHHHCEEH---HHH----------TTCSSCC----------CSEEEECCSHHHHHHHHHHHHTT-
T ss_pred EEeCCCCCCCCCCCCcccceEcH---HHH----------hhCccCC----------CEEEEECCCHHHHHHHHHHHHcC-
Confidence 99999999999999975433221 111 1122223 48999999999999999999887
Q ss_pred HHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEe--------C---CeEE----ecC
Q 018704 255 RDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD--------S---QKLI----LND 318 (351)
Q Consensus 255 ~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~--------~---~~v~----~~~ 318 (351)
.+|+++++..+++.+++++.+.+.+.+++.||+++++. +.++. . +++. +.+
T Consensus 310 -------------~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~ 376 (598)
T 2x8g_A 310 -------------GDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTD 376 (598)
T ss_dssp -------------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETT
T ss_pred -------------CEEEEEECCcCcCcCCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCC
Confidence 88999999877888999999999999999999999994 66662 2 3332 357
Q ss_pred CcEEe--ccEEEEecCCCCc-cc--cccCCCCCCCCC
Q 018704 319 GTEVP--YGLLVWSTGVGPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 319 g~~~~--~D~vi~a~G~~p~-~~--~~~~gl~~~~~G 350 (351)
|++++ +|.||+|+|++|+ ++ ++.+|++++++|
T Consensus 377 g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G 413 (598)
T 2x8g_A 377 GKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNG 413 (598)
T ss_dssp SCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTS
T ss_pred CcEEeccCCEEEEEeCCccccCccCchhcCceECCCC
Confidence 77655 9999999999999 66 467788887766
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=211.23 Aligned_cols=237 Identities=16% Similarity=0.173 Sum_probs=157.3
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhccccccc-ccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFR-SVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
+||+|||||++|+++|..|++.|++|+|||+.....+.... . ........ .....+...........++.++.. +|
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 79 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTV-D-IENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSA 79 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCC-E-ECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceecccc-c-cccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEE
Confidence 69999999999999999999999999999874211111000 0 00000000 001122222223344557787776 89
Q ss_pred eeEeCCCC---EEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccc-cccCCHHHHHHHHHHHHHhhhc
Q 018704 141 AGIDTDNH---VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA-TFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 141 ~~i~~~~~---~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
+.++.+.+ .+.+.. .++. .+.||+||+|||+.|..|++||.++.. ....... .+...
T Consensus 80 ~~i~~~~~~~~~~~v~~-~~g~--------~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~---~~~~~------- 140 (310)
T 1fl2_A 80 SKLIPAAVEGGLHQIET-ASGA--------VLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCP---HCDGP------- 140 (310)
T ss_dssp EEEECCSSTTCCEEEEE-TTSC--------EEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCH---HHHGG-------
T ss_pred EEEEecccCCceEEEEE-CCCC--------EEEeCEEEECcCCCcCCCCCCChhhcccceeEEec---cCcHh-------
Confidence 99986532 454433 4555 899999999999999999999875321 0111111 11111
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhh
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~ 296 (351)
....++++|||+|.+|+|+|..|.+.+ .+|+++++.+.+. +++ .+.+.+++
T Consensus 141 ----------~~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~----~~~~~l~~ 191 (310)
T 1fl2_A 141 ----------LFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEMK-ADQ----VLQDKLRS 191 (310)
T ss_dssp ----------GGBTCEEEEECCSHHHHHHHHHHHTTB--------------SEEEEECSSSSCC-SCH----HHHHHHHT
T ss_pred ----------hcCCCEEEEECCCHHHHHHHHHHHHhC--------------CEEEEEEeCcccC-ccH----HHHHHHhh
Confidence 123469999999999999999998766 8999999975442 333 34455666
Q ss_pred -cCcEEEcCe-EEEEeCC-----eEEecC---Cc--EEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 297 -SGVRLVRGI-VKDVDSQ-----KLILND---GT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 297 -~gV~~~~~~-v~~v~~~-----~v~~~~---g~--~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.||+++.+. ++++..+ ++++.+ |+ ++++|.||+|+|++|+ ++++.. ++++++|
T Consensus 192 ~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g 257 (310)
T 1fl2_A 192 LKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMG 257 (310)
T ss_dssp CTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTS
T ss_pred CCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhcc-ccccCCC
Confidence 699999994 9988754 466653 53 6899999999999999 788763 6655544
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=216.81 Aligned_cols=233 Identities=13% Similarity=0.140 Sum_probs=162.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchh--hhhhh-cccccccc-cccchhccchhhhcCCCeEEE-
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL--LASTC-VGTLEFRS-VAEPIARIQPAISREPGSYFF- 136 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~--~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 136 (351)
.+||+|||||++||++|..|++.|++|+|||+++.+..... .+... ...+.+.. ....+...........++.++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICL 86 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEEC
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEc
Confidence 47999999999999999999999999999999876532110 00000 00111111 012222233333344466666
Q ss_pred EEEeeeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecCC---CcCCCCCCCccc---cccccCCHHHHHHHHHH
Q 018704 137 LSHCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGA---EASTFGIHGVKE---NATFLREVHHAQEIRRK 209 (351)
Q Consensus 137 ~~~v~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~---~p~~p~i~g~~~---~~~~~~~~~~~~~~~~~ 209 (351)
..+|+.++...+ .+.+.. .++ ++.||+||+|||. .|+.|.+||.+. ...+. .+.+..
T Consensus 87 ~~~v~~i~~~~~~~~~v~~-~~g---------~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~----- 150 (332)
T 3lzw_A 87 EQAVESVEKQADGVFKLVT-NEE---------THYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDLQ----- 150 (332)
T ss_dssp SCCEEEEEECTTSCEEEEE-SSE---------EEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCGG-----
T ss_pred cCEEEEEEECCCCcEEEEE-CCC---------EEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCHH-----
Confidence 478999998776 555533 233 5899999999999 799999999753 11211 111111
Q ss_pred HHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHH
Q 018704 210 LLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHY 289 (351)
Q Consensus 210 ~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~ 289 (351)
....++++|||+|.+|+|+|..|.+.+ .+|+++++.+.+...+..
T Consensus 151 -----------------~~~~~~v~vvG~g~~~~e~a~~l~~~~--------------~~v~~~~~~~~~~~~~~~---- 195 (332)
T 3lzw_A 151 -----------------KFAGRRVAILGGGDSAVDWALMLEPIA--------------KEVSIIHRRDKFRAHEHS---- 195 (332)
T ss_dssp -----------------GGBTCEEEEECSSHHHHHHHHHHTTTB--------------SEEEEECSSSSCSSCHHH----
T ss_pred -----------------HcCCCEEEEECCCHhHHHHHHHHHhhC--------------CeEEEEEecCcCCccHHH----
Confidence 123469999999999999999998765 899999998655444332
Q ss_pred HHHHhhhcCcEEEcCe-EEEEeCC----eEEecC-----CcEEeccEEEEecCCCCc-cccccCCCCC
Q 018704 290 ATTQLSKSGVRLVRGI-VKDVDSQ----KLILND-----GTEVPYGLLVWSTGVGPS-TLVKSLDLPK 346 (351)
Q Consensus 290 ~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~-----g~~~~~D~vi~a~G~~p~-~~~~~~gl~~ 346 (351)
.+.+++.||+++.+. |++++.+ .+.+.+ +.++++|.||+|+|++|+ ++++.++++.
T Consensus 196 -~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~ 262 (332)
T 3lzw_A 196 -VENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDI 262 (332)
T ss_dssp -HHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCE
T ss_pred -HHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccc
Confidence 244788999999995 9999874 377765 457999999999999999 8999888776
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-28 Score=234.23 Aligned_cols=236 Identities=14% Similarity=0.128 Sum_probs=156.3
Q ss_pred CCcEEEECCchhHHHHHHhhh-ccCceEEEEcCCCccccchhh---hhhhcccc----------------ccc---cccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGID-TSLYDVVCVSPRNHMVFTPLL---ASTCVGTL----------------EFR---SVAE 118 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~-~~g~~v~vie~~~~~~~~~~~---~~~~~~~~----------------~~~---~~~~ 118 (351)
.+||+|||||++|+++|..|+ +.|++|+|||+++........ ++.....+ .+. ....
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP 87 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence 479999999999999999999 999999999997654321110 01000000 000 0011
Q ss_pred chhccchhhhcCCCe---EEEEEEeeeEeCCCC--EEEEEeecCccccCCCceeEeeccEEEEecC--CCcCCCCCCCcc
Q 018704 119 PIARIQPAISREPGS---YFFLSHCAGIDTDNH--VVHCETVTDELRTLEPWKFKISYDKLVIALG--AEASTFGIHGVK 191 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~--~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG--~~p~~p~i~g~~ 191 (351)
.+..+........++ ..+..+|+.++.+.. .|.++. .+|+ ++.||+||+||| +.|+.|++||.+
T Consensus 88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~-~~G~--------~i~ad~lV~AtG~~s~p~~p~ipG~~ 158 (540)
T 3gwf_A 88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT-DHGE--------VYRAKYVVNAVGLLSAINFPNLPGLD 158 (540)
T ss_dssp HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEE-TTSC--------EEEEEEEEECCCSCCSBCCCCCTTGG
T ss_pred HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEE-cCCC--------EEEeCEEEECCcccccCCCCCCCCcc
Confidence 122222222222333 344567888876654 666654 4565 799999999999 579999999986
Q ss_pred c---cccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 018704 192 E---NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (351)
Q Consensus 192 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~ 268 (351)
. ..++...+.+. ....+|+|+|||+|.+|+|+|..|++.+ .
T Consensus 159 ~f~g~~~~~~~~~~~----------------------~~~~~krV~VIG~G~sgve~a~~l~~~~--------------~ 202 (540)
T 3gwf_A 159 TFEGETIHTAAWPEG----------------------KSLAGRRVGVIGTGSTGQQVITSLAPEV--------------E 202 (540)
T ss_dssp GCCSEEEEGGGCCSS----------------------CCCTTSEEEEECCSHHHHHHHHHHTTTC--------------S
T ss_pred ccCCCEEEeecCCCc----------------------cccccceEEEECCCchHHHHHHHHHhhC--------------C
Confidence 3 22322221110 0134479999999999999999998776 8
Q ss_pred EEEEEeCCC--CCCCC----cHHHHHHHH---------------------------------------------------
Q 018704 269 HVTLIEANE--ILSSF----DDRLRHYAT--------------------------------------------------- 291 (351)
Q Consensus 269 ~v~~~~~~~--~l~~~----~~~~~~~~~--------------------------------------------------- 291 (351)
+|++++|.+ +++.. .+...+.+.
T Consensus 203 ~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~ 282 (540)
T 3gwf_A 203 HLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFM 282 (540)
T ss_dssp EEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred EEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhh
Confidence 999999974 23322 222211111
Q ss_pred ----------------------H---------------------------------HhhhcCcEEE---cCeEEEEeCCe
Q 018704 292 ----------------------T---------------------------------QLSKSGVRLV---RGIVKDVDSQK 313 (351)
Q Consensus 292 ----------------------~---------------------------------~l~~~gV~~~---~~~v~~v~~~~ 313 (351)
+ .+.+.+|+++ ...|.++++++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~g 362 (540)
T 3gwf_A 283 FGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKG 362 (540)
T ss_dssp HTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSE
T ss_pred hhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCe
Confidence 0 0124589999 45699999999
Q ss_pred EEecCCcEEeccEEEEecCCCCcc-ccccC
Q 018704 314 LILNDGTEVPYGLLVWSTGVGPST-LVKSL 342 (351)
Q Consensus 314 v~~~~g~~~~~D~vi~a~G~~p~~-~~~~~ 342 (351)
|+++||+++++|+||+|||++++. ++..+
T Consensus 363 v~~~dG~~~~~DvIV~ATGf~~~~~~~~~~ 392 (540)
T 3gwf_A 363 VVTEDGVLHELDVLVFATGFDAVDGNYRRI 392 (540)
T ss_dssp EEETTCCEEECSEEEECCCBSCSSHHHHTS
T ss_pred EEcCCCCEEECCEEEECCccCccccCcCcc
Confidence 999999999999999999999984 66544
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-28 Score=219.73 Aligned_cols=241 Identities=17% Similarity=0.212 Sum_probs=156.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccc-c-ccchhccchhhhcCCCeEEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS-V-AEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
+.+||+|||||++|+++|..|++.|++|+|||+..... ...........+.+.. + ...+...........++.++..
T Consensus 13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~ 91 (335)
T 2a87_A 13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGG-ALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRME 91 (335)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSC-GGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC-ceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEe
Confidence 45899999999999999999999999999999752110 0000000000011100 0 0111222222233346777777
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccc-cccCCHHHHHHHHHHHHHhhhcc
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA-TFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
.|+.++. .+.+.+....++. .+.||+||+|||+.|..|++||.+... ..+..... ....+
T Consensus 92 ~v~~i~~-~~~~~v~~~~~g~--------~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~---~~~~~------- 152 (335)
T 2a87_A 92 DVESVSL-HGPLKSVVTADGQ--------THRARAVILAMGAAARYLQVPGEQELLGRGVSSCAT---CDGFF------- 152 (335)
T ss_dssp CEEEEEC-SSSSEEEEETTSC--------EEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHH---HHGGG-------
T ss_pred eEEEEEe-CCcEEEEEeCCCC--------EEEeCEEEECCCCCccCCCCCchHhccCCceEEeec---cchhh-------
Confidence 7888887 4434331224555 899999999999999999999864311 01111111 11110
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhc
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS 297 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~ 297 (351)
...++++|||+|.+|+|+|..|.+++ .+|+++++...+.. ...+. .+.+++.
T Consensus 153 ----------~~~~~v~ViG~G~~g~e~a~~l~~~g--------------~~V~l~~~~~~~~~-~~~~~---~~~~~~~ 204 (335)
T 2a87_A 153 ----------FRDQDIAVIGGGDSAMEEATFLTRFA--------------RSVTLVHRRDEFRA-SKIML---DRARNND 204 (335)
T ss_dssp ----------GTTCEEEEECSSHHHHHHHHHHTTTC--------------SEEEEECSSSSCSS-CTTHH---HHHHHCT
T ss_pred ----------cCCCEEEEECCCHHHHHHHHHHHHhC--------------CeEEEEEcCCcCCc-cHHHH---HHHhccC
Confidence 23469999999999999999998766 89999999753321 12222 2345678
Q ss_pred CcEEEcCe-EEEEeCCe----EEec---CC--cEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 298 GVRLVRGI-VKDVDSQK----LILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~----v~~~---~g--~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
||+++.+. |++++.+. +.+. +| +++++|.||+|+|++|+ ++++ .++++|++|
T Consensus 205 gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G 267 (335)
T 2a87_A 205 KIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVR-EAIDVDPDG 267 (335)
T ss_dssp TEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTB-TTBCBCTTS
T ss_pred CcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhh-cccccCCCc
Confidence 99999995 99998653 7775 45 57899999999999999 6776 467766555
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=222.54 Aligned_cols=244 Identities=18% Similarity=0.241 Sum_probs=165.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhh----------------hh-----hcccccccccccch
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA----------------ST-----CVGTLEFRSVAEPI 120 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~----------------~~-----~~~~~~~~~~~~~~ 120 (351)
++||+|||||++|+++|..|++.|++|+|||+++.+....... .. ..+...........
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 84 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV 84 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence 4799999999999999999999999999999966542110000 00 00100000000000
Q ss_pred hc--------------cchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeE------eeccEEEEecCC
Q 018704 121 AR--------------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFK------ISYDKLVIALGA 180 (351)
Q Consensus 121 ~~--------------~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~------~~~d~lviAtG~ 180 (351)
.. .........++.++......+ +.+.+.+.. .++. ... +.||+||+|||+
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~--~~~~v~V~~-~~G~------~~~~~~~~~i~~d~lViAtGs 155 (478)
T 1v59_A 85 ANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE--DETKIRVTP-VDGL------EGTVKEDHILDVKNIIVATGS 155 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES--SSSEEEEEC-CTTC------TTCCSSCEEEEEEEEEECCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCeEEEEe-cCCC------cccccccceEEeCEEEECcCC
Confidence 00 011122335777776654433 455666643 2331 015 999999999999
Q ss_pred CcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhh
Q 018704 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (351)
Q Consensus 181 ~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~ 260 (351)
.|+ .+||.+.....+.+..++.. +... .++++|||||.+|+|+|..|.+++
T Consensus 156 ~p~--~~~g~~~~~~~v~~~~~~~~----------~~~~----------~~~vvViGgG~~g~e~A~~l~~~g------- 206 (478)
T 1v59_A 156 EVT--PFPGIEIDEEKIVSSTGALS----------LKEI----------PKRLTIIGGGIIGLEMGSVYSRLG------- 206 (478)
T ss_dssp EEC--CCTTCCCCSSSEECHHHHTT----------CSSC----------CSEEEEECCSHHHHHHHHHHHHTT-------
T ss_pred CCC--CCCCCCCCCceEEcHHHHHh----------hhcc----------CceEEEECCCHHHHHHHHHHHHcC-------
Confidence 874 34554311112223332211 1122 359999999999999999999887
Q ss_pred hcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C----eEEec-----CCcEEeccEE
Q 018704 261 YSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q----KLILN-----DGTEVPYGLL 327 (351)
Q Consensus 261 ~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~----~v~~~-----~g~~~~~D~v 327 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++. + .+.+. +++++++|.|
T Consensus 207 -------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~v 279 (478)
T 1v59_A 207 -------SKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVL 279 (478)
T ss_dssp -------CEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEE
T ss_pred -------CEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEE
Confidence 899999997 57788999999999999999999999994 998864 2 35554 3567999999
Q ss_pred EEecCCCCc-c--ccccCCCCCCCCC
Q 018704 328 VWSTGVGPS-T--LVKSLDLPKSPGG 350 (351)
Q Consensus 328 i~a~G~~p~-~--~~~~~gl~~~~~G 350 (351)
|+|+|++|+ + +++.+|++++++|
T Consensus 280 v~a~G~~p~~~~l~l~~~g~~~~~~G 305 (478)
T 1v59_A 280 LVAVGRRPYIAGLGAEKIGLEVDKRG 305 (478)
T ss_dssp EECSCEEECCTTSCTTTTTCCBCTTS
T ss_pred EECCCCCcCCCCCCchhcCceeCCCC
Confidence 999999999 5 7888898887666
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=217.66 Aligned_cols=237 Identities=14% Similarity=0.131 Sum_probs=161.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchh--hhhh-hccccccccc-ccchhccchhhhcCCCeEEE-
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL--LAST-CVGTLEFRSV-AEPIARIQPAISREPGSYFF- 136 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~--~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 136 (351)
.+||+|||||++||++|..|++.|++|+|||+++.+..... .+.. ....+.+..+ ...+.+.........++.++
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 93 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL 93 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence 57999999999999999999999999999999876432211 0000 0000111000 01111122222333455554
Q ss_pred EEEeeeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecCC---CcCCCCCCC-cccc----ccc-cCCHHHHHHH
Q 018704 137 LSHCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGA---EASTFGIHG-VKEN----ATF-LREVHHAQEI 206 (351)
Q Consensus 137 ~~~v~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~---~p~~p~i~g-~~~~----~~~-~~~~~~~~~~ 206 (351)
..+|+.++.+.+ .+.+.. .++. .+.||+||+|||. .|..+++|| .+.. +.+ ..+..
T Consensus 94 ~~~v~~i~~~~~~~~~v~~-~~g~--------~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~----- 159 (360)
T 3ab1_A 94 NETVTKYTKLDDGTFETRT-NTGN--------VYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVE----- 159 (360)
T ss_dssp SCCEEEEEECTTSCEEEEE-TTSC--------EEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCGG-----
T ss_pred CCEEEEEEECCCceEEEEE-CCCc--------EEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCHH-----
Confidence 457888887654 555543 4555 8999999999998 577777887 5321 111 11111
Q ss_pred HHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHH
Q 018704 207 RRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRL 286 (351)
Q Consensus 207 ~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~ 286 (351)
....++|+|||+|.+|+|+|..|.+.+ .+|+++++.+.+... +..
T Consensus 160 --------------------~~~~~~vvVvG~G~~g~e~A~~l~~~g--------------~~V~lv~~~~~~~~~-~~~ 204 (360)
T 3ab1_A 160 --------------------DFKGKRVVIVGGGDSALDWTVGLIKNA--------------ASVTLVHRGHEFQGH-GKT 204 (360)
T ss_dssp --------------------GGTTCEEEEECSSHHHHHHHHHTTTTS--------------SEEEEECSSSSCSSC-SHH
T ss_pred --------------------HcCCCcEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEcCCCCCCC-HHH
Confidence 013459999999999999999998765 899999997543332 355
Q ss_pred HHHHHHHhhhcCcEEEcC-eEEEEeCC-----eEEec--CC--cEEeccEEEEecCCCCc-cccccCCCCCC
Q 018704 287 RHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILN--DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (351)
Q Consensus 287 ~~~~~~~l~~~gV~~~~~-~v~~v~~~-----~v~~~--~g--~~~~~D~vi~a~G~~p~-~~~~~~gl~~~ 347 (351)
.+.+.+.+++.||+++.+ +|++++.+ +|.+. +| .++++|.||+|+|++|+ ++++.++++++
T Consensus 205 ~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~ 276 (360)
T 3ab1_A 205 AHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELY 276 (360)
T ss_dssp HHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEE
T ss_pred HHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccc
Confidence 666777888899999999 59888753 57774 77 57999999999999999 79988887765
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=216.85 Aligned_cols=245 Identities=16% Similarity=0.176 Sum_probs=160.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcC----CCccccchhhhhhhcccccccc--cccchhccchhhhcCCCeEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP----RNHMVFTPLLASTCVGTLEFRS--VAEPIARIQPAISREPGSYF 135 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 135 (351)
.+||+|||||++|+++|+.|++.|++|+|||+ .................+.+.. ....+...........++.+
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~ 87 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI 87 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEE
Confidence 47999999999999999999999999999998 2221110000000000111100 01112222222233446777
Q ss_pred EEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcccc--ccccCCHHHHHHHHHHHHHh
Q 018704 136 FLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN--ATFLREVHHAQEIRRKLLLN 213 (351)
Q Consensus 136 ~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~--~~~~~~~~~~~~~~~~~~~~ 213 (351)
+...|..++.+.+.+.+.. ++. .+.||+||+|||..|..|++||.+.. .+....+.....+....
T Consensus 88 ~~~~v~~i~~~~~~~~v~~--~~~--------~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--- 154 (333)
T 1vdc_A 88 FTETVTKVDFSSKPFKLFT--DSK--------AILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAA--- 154 (333)
T ss_dssp ECCCCCEEECSSSSEEEEC--SSE--------EEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTS---
T ss_pred EEeEEEEEEEcCCEEEEEE--CCc--------EEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccch---
Confidence 7777999998877666654 444 89999999999999999999987531 12212221111111110
Q ss_pred hhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHH
Q 018704 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (351)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~ 293 (351)
.....++|+|||+|.+|+|+|..|.+.+ .+|+++++.+.+.. .+.+ ..+.
T Consensus 155 ------------~~~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~V~lv~~~~~~~~-~~~~---~~~~ 204 (333)
T 1vdc_A 155 ------------PIFRNKPLAVIGGGDSAMEEANFLTKYG--------------SKVYIIHRRDAFRA-SKIM---QQRA 204 (333)
T ss_dssp ------------GGGTTSEEEEECCSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCS-CHHH---HHHH
T ss_pred ------------hhcCCCeEEEECCChHHHHHHHHHHhcC--------------CeEEEEecCCcCCc-cHHH---HHHH
Confidence 0023469999999999999999998766 89999999754321 2222 2244
Q ss_pred hhhcCcEEEcCe-EEEEeCCe-------EEec---CC--cEEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 294 LSKSGVRLVRGI-VKDVDSQK-------LILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 294 l~~~gV~~~~~~-v~~v~~~~-------v~~~---~g--~~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
+++.||+++.+. |+++..+. +.+. +| .++++|.||+|+|++|+ ++++ .+++++++|
T Consensus 205 ~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G 274 (333)
T 1vdc_A 205 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLD-GGVELDSDG 274 (333)
T ss_dssp HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT-TSSCBCTTS
T ss_pred HhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhh-ccccccCCC
Confidence 567899999994 98887532 7775 45 56899999999999999 6765 467766555
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=221.24 Aligned_cols=234 Identities=21% Similarity=0.254 Sum_probs=161.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----hhhh-----------hh--------cccccc---cc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLAS-----------TC--------VGTLEF---RS 115 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----~~~~-----------~~--------~~~~~~---~~ 115 (351)
++||+|||||+||++||..|++.|++|+|||++ .+.... ..+. .. .+.... .+
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 83 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLD 83 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC-CCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCccC
Confidence 489999999999999999999999999999994 321110 0000 00 111100 00
Q ss_pred cccchhc----------cchhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 116 VAEPIAR----------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 116 ~~~~~~~----------~~~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
+...+.. ....+....++.++.+.+..++ .+.+.+. + . .+.||+||||||+.|+.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~v~---~-~--------~~~~d~lviATGs~p~~~ 149 (458)
T 1lvl_A 84 IGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLD--GKQVEVD---G-Q--------RIQCEHLLLATGSSSVEL 149 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEE--TTEEEET---T-E--------EEECSEEEECCCEEECCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEcc--CCEEEEe---e-E--------EEEeCEEEEeCCCCCCCC
Confidence 1000000 0112233457777776665554 4566542 2 3 899999999999998877
Q ss_pred C-CCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 018704 186 G-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (351)
Q Consensus 186 ~-i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~ 264 (351)
+ +|. +..+ .+..+.. .+.. ..++++|||||.+|+|+|..|.+++
T Consensus 150 ~~~~~-~~~v---~~~~~~~----------~~~~----------~~~~vvViGgG~~g~e~A~~l~~~g----------- 194 (458)
T 1lvl_A 150 PMLPL-GGPV---ISSTEAL----------APKA----------LPQHLVVVGGGYIGLELGIAYRKLG----------- 194 (458)
T ss_dssp TTBCC-BTTE---ECHHHHT----------CCSS----------CCSEEEEECCSHHHHHHHHHHHHHT-----------
T ss_pred CCCCc-cCcE---ecHHHHh----------hhhc----------cCCeEEEECcCHHHHHHHHHHHHCC-----------
Confidence 5 552 2222 2222221 1112 2359999999999999999999887
Q ss_pred CCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcC-eEEEEeCCeEEec--CC--cEEeccEEEEecCCCCc-c
Q 018704 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILN--DG--TEVPYGLLVWSTGVGPS-T 337 (351)
Q Consensus 265 ~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~~~v~~~--~g--~~~~~D~vi~a~G~~p~-~ 337 (351)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+ +|++++.+++.+. +| +++++|.||+|+|++|+ +
T Consensus 195 ---~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~ 271 (458)
T 1lvl_A 195 ---AQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTK 271 (458)
T ss_dssp ---CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECCS
T ss_pred ---CeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCCC
Confidence 899999997 5778889999999999999999999999 4999986545554 56 67999999999999999 5
Q ss_pred c--cccCCCCCCC
Q 018704 338 L--VKSLDLPKSP 348 (351)
Q Consensus 338 ~--~~~~gl~~~~ 348 (351)
+ ++.+|+++++
T Consensus 272 ~l~~~~~g~~~~~ 284 (458)
T 1lvl_A 272 GFNLECLDLKMNG 284 (458)
T ss_dssp SSSGGGSCCCEET
T ss_pred CCCcHhcCCcccC
Confidence 4 5777776543
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-27 Score=219.84 Aligned_cols=240 Identities=19% Similarity=0.199 Sum_probs=156.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc--hhhhh----------hhccccccc-----ccccchhccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT--PLLAS----------TCVGTLEFR-----SVAEPIARIQ 124 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~--~~~~~----------~~~~~~~~~-----~~~~~~~~~~ 124 (351)
++||+|||||++|+++|..|++.|++|+|||+++..... ..+.. ...+..... .....+..+.
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYL 82 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHH
Confidence 379999999999999999999999999999998754211 00000 000000000 0001222222
Q ss_pred hhhhcCCCeEEEE-EEeeeEeCCCCEEE-EEeecCccccCCCceeEeeccEEEEecCC--CcCCCCCCCcccc---cccc
Q 018704 125 PAISREPGSYFFL-SHCAGIDTDNHVVH-CETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHGVKEN---ATFL 197 (351)
Q Consensus 125 ~~~~~~~~~~~~~-~~v~~i~~~~~~v~-~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~p~~p~i~g~~~~---~~~~ 197 (351)
..+....++.++. .+|+.++.+.+.|. +++ ++. ++.||+||+|||. .|..|.+||.+.. .++.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~--~~g--------~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~ 152 (357)
T 4a9w_A 83 AQYEQKYALPVLRPIRVQRVSHFGERLRVVAR--DGR--------QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHS 152 (357)
T ss_dssp HHHHHHTTCCEECSCCEEEEEEETTEEEEEET--TSC--------EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEG
T ss_pred HHHHHHcCCEEEcCCEEEEEEECCCcEEEEEe--CCC--------EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEe
Confidence 2333334555544 58999998888877 643 223 7999999999995 5778999997531 2222
Q ss_pred CCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-
Q 018704 198 REVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN- 276 (351)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~- 276 (351)
..+.+. .....++|+|||+|.+|+|+|..|.+.+ +|+++.+.
T Consensus 153 ~~~~~~----------------------~~~~~~~v~VvG~G~~g~e~a~~l~~~~---------------~v~~v~~~~ 195 (357)
T 4a9w_A 153 AHYSTP----------------------APFAGMRVAIIGGGNSGAQILAEVSTVA---------------ETTWITQHE 195 (357)
T ss_dssp GGCCCS----------------------GGGTTSEEEEECCSHHHHHHHHHHTTTS---------------EEEEECSSC
T ss_pred ccCCCh----------------------hhcCCCEEEEECCCcCHHHHHHHHHhhC---------------CEEEEECCC
Confidence 111111 1123469999999999999999998653 59999886
Q ss_pred C-CCCCC--cHHHHHHHHHHhh----------------------------hcCcEEEcC-eEEEEeCCeEEecCCcEEec
Q 018704 277 E-ILSSF--DDRLRHYATTQLS----------------------------KSGVRLVRG-IVKDVDSQKLILNDGTEVPY 324 (351)
Q Consensus 277 ~-~l~~~--~~~~~~~~~~~l~----------------------------~~gV~~~~~-~v~~v~~~~v~~~~g~~~~~ 324 (351)
. +++.. ...+.+.+.+.+. +.|+ +..+ .+.+++.+++.+.+|+++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~~~v~~~~g~~i~~ 274 (357)
T 4a9w_A 196 PAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSPTGMQWADGTERAF 274 (357)
T ss_dssp CCBCCTTCCTHHHHTC----------------------CBCCCHHHHHHHHTTC-CCEECCCSEEETTEEECTTSCEEEC
T ss_pred CeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcccChhHHHHHhcCc-eEEecCcceEeCCeeEECCCCEecC
Confidence 2 33322 2333322222222 3444 3334 47788889999999999999
Q ss_pred cEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 325 GLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 325 D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
|.||+|+|++|+ +|++.++++ +++|
T Consensus 275 D~vi~a~G~~p~~~~l~~~gl~-~~~G 300 (357)
T 4a9w_A 275 DAVIWCTGFRPALSHLKGLDLV-TPQG 300 (357)
T ss_dssp SEEEECCCBCCCCGGGTTTTCB-CTTS
T ss_pred CEEEECCCcCCCCcccCccccc-CCCC
Confidence 999999999999 999999887 6655
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-27 Score=226.16 Aligned_cols=237 Identities=16% Similarity=0.196 Sum_probs=159.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch----hhh-----------hhh-----ccc------ccccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLA-----------STC-----VGT------LEFRS 115 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~----~~~-----------~~~-----~~~------~~~~~ 115 (351)
++||+||||||||++||..|++.|++|+|||++... ... +.+ ... .+. ..+..
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~~G-Gtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 86 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGAYG-TTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNGKA 86 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSCSS-CHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC-CcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCHHH
Confidence 479999999999999999999999999999997521 110 000 000 000 01100
Q ss_pred cccchhccc--------hhhhcCCCeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 116 VAEPIARIQ--------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 116 ~~~~~~~~~--------~~~~~~~~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
+...+.... ..+.....+.++.+.....+ .+.+.+ .++. .+.||+||||||+.|..|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~--~~~v~~---~~~~--------~~~~d~lViATGs~p~~p~~ 153 (492)
T 3ic9_A 87 VMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLD--EHTLQV---DDHS--------QVIAKRIVIATGSRPNYPEF 153 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEE--TTEEEE---TTTE--------EEEEEEEEECCCEECCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEec--CCEEEE---cCCc--------EEEeCEEEEccCCCCcCCCC
Confidence 001111100 11111122223333322222 345544 2444 89999999999999998876
Q ss_pred CCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 018704 188 HGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (351)
Q Consensus 188 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~ 266 (351)
++.. +.+++. .+. +.+... .++++|||||.+|+|+|..|.+++
T Consensus 154 ~~~~~~~v~t~---~~~----------~~~~~~----------~k~vvViGgG~ig~E~A~~l~~~g------------- 197 (492)
T 3ic9_A 154 LAAAGSRLLTN---DNL----------FELNDL----------PKSVAVFGPGVIGLELGQALSRLG------------- 197 (492)
T ss_dssp HHTTGGGEECH---HHH----------TTCSSC----------CSEEEEESSCHHHHHHHHHHHHTT-------------
T ss_pred CCccCCcEEcH---HHH----------hhhhhc----------CCeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 6532 223222 111 112222 359999999999999999999887
Q ss_pred ccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEec--CC--cEEeccEEEEecCCCCc
Q 018704 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILN--DG--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 267 ~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~--~g--~~~~~D~vi~a~G~~p~ 336 (351)
.+|+++++. .+++.+++++.+.+.+.+++. |+++.+. |++++. ++ +.+. +| .++++|.||+|+|++|+
T Consensus 198 -~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~ 275 (492)
T 3ic9_A 198 -VIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN 275 (492)
T ss_dssp -CEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred -CeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence 899999997 577888999999999999988 9999995 888864 33 4443 67 67999999999999999
Q ss_pred -cc--cccCCCCCCCCC
Q 018704 337 -TL--VKSLDLPKSPGG 350 (351)
Q Consensus 337 -~~--~~~~gl~~~~~G 350 (351)
++ ++.+|++++++|
T Consensus 276 ~~~l~l~~~gl~~~~~G 292 (492)
T 3ic9_A 276 VDKLGLENTSIELDKKN 292 (492)
T ss_dssp CSSSCGGGSCCCBCTTC
T ss_pred CCCCChhhcCCEECCCC
Confidence 66 778899888776
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-27 Score=211.79 Aligned_cols=235 Identities=15% Similarity=0.162 Sum_probs=142.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhc-cccccccc--ccchhccchhhhcCCCeEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV-GTLEFRSV--AEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 137 (351)
+++||+|||||||||+||.+|++.|++|+|||+..... .+....|. +.+.+... .+...................
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG--~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGG--QMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYG 82 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTG--GGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCC--eeecccccCCcCCccccchHHHHHHHHHHHhhccccccce
Confidence 46999999999999999999999999999999854211 01111110 11111110 011111112222222233332
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
..+...+........ .++. ++.||+||||||+.|+.|++||.+.... ..+..........
T Consensus 83 ~~~~~~~~~~~~~~~---~~~~--------~~~~d~liiAtGs~~~~~~ipG~~~~~~--~~v~~~~~~~~~~------- 142 (312)
T 4gcm_A 83 DIKSVEDKGEYKVIN---FGNK--------ELTAKAVIIATGAEYKKIGVPGEQELGG--RGVSYCAVCDGAF------- 142 (312)
T ss_dssp CCCEEEECSSCEEEE---CSSC--------EEEEEEEEECCCEEECCCCCTTTTTTBT--TTEESCHHHHGGG-------
T ss_pred eeeeeeeeecceeec---cCCe--------EEEeceeEEcccCccCcCCCCChhhhCC--ccEEeeeccCccc-------
Confidence 333333433333322 3454 8999999999999999999999863211 1111111111110
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCCCcHHHHHHHHHHhhh
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSK 296 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~ 296 (351)
...|+++|||||++|+|+|..|.+++ .+|+++++.+ +++.. ....+.++.
T Consensus 143 ----------~~~k~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~~~~~-----~~~~~~~~~ 193 (312)
T 4gcm_A 143 ----------FKNKRLFVIGGGDSAVEEGTFLTKFA--------------DKVTIVHRRDELRAQR-----ILQDRAFKN 193 (312)
T ss_dssp ----------GTTCEEEEECCSHHHHHHHHHHTTTC--------------SEEEEECSSSSCCSCH-----HHHHHHHHC
T ss_pred ----------cCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEecccccCcch-----hHHHHHHHh
Confidence 23469999999999999999999887 8999999975 33321 122345666
Q ss_pred cCcEEEcCe-EEEEeC--C---e--E-Ee--cCCcEEeccEEEEecCCCCc-cccccCCCCC
Q 018704 297 SGVRLVRGI-VKDVDS--Q---K--L-IL--NDGTEVPYGLLVWSTGVGPS-TLVKSLDLPK 346 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~--~---~--v-~~--~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~ 346 (351)
.++...... +..... . . . .. .++..+++|.|++++|..|+ .+++.+++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~ 255 (312)
T 4gcm_A 194 DKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITN 255 (312)
T ss_dssp TTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBC
T ss_pred cCcceeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceec
Confidence 778877774 333321 1 1 1 11 23456899999999999999 7777777653
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-27 Score=229.13 Aligned_cols=179 Identities=15% Similarity=0.119 Sum_probs=107.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhh---hhhhccc----------------ccccc---ccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL---ASTCVGT----------------LEFRS---VAE 118 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~---~~~~~~~----------------~~~~~---~~~ 118 (351)
..+||||||||++|+++|..|++.|++|+|||+++.+...... ++..... ..+.. ...
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ 87 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQP 87 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHH
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHH
Confidence 4579999999999999999999999999999998754221100 0000000 00000 011
Q ss_pred chhccchhhhcCCC---eEEEEEEeeeEeCCC--CEEEEEeecCccccCCCceeEeeccEEEEecC--CCcCCCCCCCcc
Q 018704 119 PIARIQPAISREPG---SYFFLSHCAGIDTDN--HVVHCETVTDELRTLEPWKFKISYDKLVIALG--AEASTFGIHGVK 191 (351)
Q Consensus 119 ~~~~~~~~~~~~~~---~~~~~~~v~~i~~~~--~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG--~~p~~p~i~g~~ 191 (351)
.+..+...+....+ ...+..+|+.++.+. ..|.++. .+|+ ++.||+||+||| +.|+.|++||.+
T Consensus 88 ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~-~~G~--------~~~ad~lV~AtG~~s~p~~p~ipG~~ 158 (545)
T 3uox_A 88 EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTL-DNEE--------VVTCRFLISATGPLSASRMPDIKGID 158 (545)
T ss_dssp HHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEE-TTTE--------EEEEEEEEECCCSCBC---CCCTTGG
T ss_pred HHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEE-CCCC--------EEEeCEEEECcCCCCCCcCCCCCCcc
Confidence 11222222222222 223455777776544 4666644 4565 899999999999 789999999986
Q ss_pred cc---ccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 018704 192 EN---ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (351)
Q Consensus 192 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~ 268 (351)
.. .++...+.+. ....|. .....+|+|+|||+|.+|+|+|..|++.+ .
T Consensus 159 ~f~g~~~h~~~~~~~------------~~~~~~---~~~~~~krV~VIG~G~tgve~a~~la~~~--------------~ 209 (545)
T 3uox_A 159 SFKGESFHSSRWPTD------------AEGAPK---GVDFTGKRVGVIGTGATGVQIIPIAAETA--------------K 209 (545)
T ss_dssp GCCSEEEEGGGCCBC------------TTSCBS---CCCCBTCEEEEECCSHHHHHHHHHHTTTB--------------S
T ss_pred ccCCCeEEccccccc------------cccccc---ccccCCCeEEEECCCccHHHHHHHHHhhC--------------C
Confidence 31 2222111000 000000 01134579999999999999999998766 8
Q ss_pred EEEEEeCCC
Q 018704 269 HVTLIEANE 277 (351)
Q Consensus 269 ~v~~~~~~~ 277 (351)
+|++++|.+
T Consensus 210 ~Vtv~~r~~ 218 (545)
T 3uox_A 210 ELYVFQRTP 218 (545)
T ss_dssp EEEEEESSC
T ss_pred EEEEEEcCC
Confidence 999999974
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=215.37 Aligned_cols=234 Identities=16% Similarity=0.192 Sum_probs=154.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCcccc------------chhhhhhhccccccc--------------
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVF------------TPLLASTCVGTLEFR-------------- 114 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~~~~------------~~~~~~~~~~~~~~~-------------- 114 (351)
.+||+|||||++|+++|..|++.|+ +|+|||+++ ... .+.+.....+.....
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNE 82 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCC
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccccc
Confidence 4799999999999999999999999 999999986 110 000000000110000
Q ss_pred c--cccchhccchhhhcCCCeEEEE-EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc
Q 018704 115 S--VAEPIARIQPAISREPGSYFFL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK 191 (351)
Q Consensus 115 ~--~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~ 191 (351)
. ....+..+...+....++.++. .+|+.++.+.+.+.+.. .+ . .+.||+||+|||..+. |.+|+
T Consensus 83 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~-g--------~~~~d~vVlAtG~~~~-p~ip~-- 149 (369)
T 3d1c_A 83 EHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIAT-TT-E--------TYHADYIFVATGDYNF-PKKPF-- 149 (369)
T ss_dssp SSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEE-SS-C--------CEEEEEEEECCCSTTS-BCCCS--
T ss_pred cCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEe-CC-C--------EEEeCEEEECCCCCCc-cCCCC--
Confidence 0 0011112222233344666655 47888988765565543 22 2 6899999999999865 55666
Q ss_pred ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 018704 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (351)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~ 271 (351)
+..++...+.+. ...+.++|+|||+|.+|+|+|..|.+.+ .+|+
T Consensus 150 ~~~~~~~~~~~~----------------------~~~~~~~vvVvG~G~~g~e~a~~l~~~g--------------~~V~ 193 (369)
T 3d1c_A 150 KYGIHYSEIEDF----------------------DNFNKGQYVVIGGNESGFDAAYQLAKNG--------------SDIA 193 (369)
T ss_dssp SSCEEGGGCSCG----------------------GGSCSSEEEEECCSHHHHHHHHHHHHTT--------------CEEE
T ss_pred CceechhhcCCh----------------------hhcCCCEEEEECCCcCHHHHHHHHHhcC--------------CeEE
Confidence 233332222111 0123469999999999999999999876 8999
Q ss_pred EEeCCC-CCC-------CCcHHHHHHHHHHhhhcC-cEEEcCe-EEEE--eCC--eEEecCCcEEe-ccEEEEecCCCCc
Q 018704 272 LIEANE-ILS-------SFDDRLRHYATTQLSKSG-VRLVRGI-VKDV--DSQ--KLILNDGTEVP-YGLLVWSTGVGPS 336 (351)
Q Consensus 272 ~~~~~~-~l~-------~~~~~~~~~~~~~l~~~g-V~~~~~~-v~~v--~~~--~v~~~~g~~~~-~D~vi~a~G~~p~ 336 (351)
++++.+ +++ .+++.+.+.+.+.+++.| |+++.+. |.++ +++ .+.+.+|++++ +|.||+|+|++|+
T Consensus 194 lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~ 273 (369)
T 3d1c_A 194 LYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDAT 273 (369)
T ss_dssp EECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGG
T ss_pred EEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCc
Confidence 999974 332 245677788888899997 9999994 9998 444 46778898775 6999999999999
Q ss_pred -cccccCCCC
Q 018704 337 -TLVKSLDLP 345 (351)
Q Consensus 337 -~~~~~~gl~ 345 (351)
+++.+.+++
T Consensus 274 ~~~~~~~~~~ 283 (369)
T 3d1c_A 274 KNPIVQQLFV 283 (369)
T ss_dssp GSHHHHHHSC
T ss_pred cchhhhhhcc
Confidence 466543444
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-27 Score=227.24 Aligned_cols=236 Identities=14% Similarity=0.130 Sum_probs=154.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhh---hhhhcccc----------------cc---ccccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL---ASTCVGTL----------------EF---RSVAE 118 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~---~~~~~~~~----------------~~---~~~~~ 118 (351)
..+||||||||++|+++|..|++.|++|+|||+++........ ++.....+ .+ .....
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ 99 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQP 99 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHH
T ss_pred CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHH
Confidence 3579999999999999999999999999999997754321110 01100000 00 00011
Q ss_pred chhccchhhhcCCCe---EEEEEEeeeEeCCCC--EEEEEeecCccccCCCceeEeeccEEEEecC--CCcCCCCCCCcc
Q 018704 119 PIARIQPAISREPGS---YFFLSHCAGIDTDNH--VVHCETVTDELRTLEPWKFKISYDKLVIALG--AEASTFGIHGVK 191 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~--~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG--~~p~~p~i~g~~ 191 (351)
.+..+........++ ..+..+|+.++.+.. .|.++. .+|+ ++.||+||+||| +.|+.|.+||.+
T Consensus 100 ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~-~~G~--------~i~ad~lV~AtG~~s~p~~p~ipG~~ 170 (549)
T 4ap3_A 100 EILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRT-DRGD--------EVSARFLVVAAGPLSNANTPAFDGLD 170 (549)
T ss_dssp HHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEE-TTCC--------EEEEEEEEECCCSEEECCCCCCTTGG
T ss_pred HHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEE-CCCC--------EEEeCEEEECcCCCCCCCCCCCCCcc
Confidence 122222222222232 334557888876554 666654 4565 799999999999 679999999986
Q ss_pred cc---ccccCCHH-HHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 018704 192 EN---ATFLREVH-HAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (351)
Q Consensus 192 ~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~ 267 (351)
.. .++...+. +.. ...+|+|+|||+|.+|+|+|..|++.+
T Consensus 171 ~f~g~~~~~~~~~~~~~----------------------~~~~krV~VIG~G~sgve~a~~l~~~~-------------- 214 (549)
T 4ap3_A 171 RFTGDIVHTARWPHDGV----------------------DFTGKRVGVIGTGSSGIQSIPIIAEQA-------------- 214 (549)
T ss_dssp GCCSEEEEGGGCCTTCC----------------------CCBTCEEEEECCSHHHHHHHHHHHHHB--------------
T ss_pred cCCCceEEecccccccc----------------------ccCCCEEEEECCCchHHHHHHHHHhhC--------------
Confidence 32 23322211 100 024469999999999999999999877
Q ss_pred cEEEEEeCCCC--CCCCcH----HHHHHH---------------------------------------------------
Q 018704 268 IHVTLIEANEI--LSSFDD----RLRHYA--------------------------------------------------- 290 (351)
Q Consensus 268 ~~v~~~~~~~~--l~~~~~----~~~~~~--------------------------------------------------- 290 (351)
.+|++++|.+. ++..+. ...+.+
T Consensus 215 ~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~ 294 (549)
T 4ap3_A 215 EQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFS 294 (549)
T ss_dssp SEEEEEESSCCCEEECC----CHHHHHHHHHTHHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHT
T ss_pred CEEEEEECCCCccccCcCCCCCHHHHHHHHhccHHHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHH
Confidence 89999999752 332221 111000
Q ss_pred --------------------H-----------------------------------HHhhhcCcEEE---cCeEEEEeCC
Q 018704 291 --------------------T-----------------------------------TQLSKSGVRLV---RGIVKDVDSQ 312 (351)
Q Consensus 291 --------------------~-----------------------------------~~l~~~gV~~~---~~~v~~v~~~ 312 (351)
. +.+.+.+|+++ ...|++++++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~ 374 (549)
T 4ap3_A 295 KAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDET 374 (549)
T ss_dssp TSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETT
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCC
Confidence 0 01224489998 6679999999
Q ss_pred eEEecCCcEEeccEEEEecCCCCcc-ccccC
Q 018704 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSL 342 (351)
Q Consensus 313 ~v~~~~g~~~~~D~vi~a~G~~p~~-~~~~~ 342 (351)
+|+++|| ++++|+||+|||++++. ++..+
T Consensus 375 gv~~~dG-~~~~D~iI~ATGf~~~~~~~~~~ 404 (549)
T 4ap3_A 375 GIVTTGA-HYDLDMIVLATGFDAMTGSLDKL 404 (549)
T ss_dssp EEEESSC-EEECSEEEECCCEEESSTTGGGS
T ss_pred cEEeCCC-ceecCEEEECCcccccccccCce
Confidence 9999999 99999999999999884 66554
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=220.79 Aligned_cols=226 Identities=15% Similarity=0.083 Sum_probs=148.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCccccchhhhhhh----------------------------ccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFTPLLASTC----------------------------VGT 110 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~~~~~~~~~~~~----------------------------~~~ 110 (351)
+.+||+|||||++||++|..|++.|. +|+|||+++............ ...
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~ 84 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL 84 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence 35899999999999999999999999 999999876442110000000 000
Q ss_pred c------------ccccc-----------ccchhccchhhhcCCC-eEEEEEEeeeEeCCCCEEEEEeec--CccccCCC
Q 018704 111 L------------EFRSV-----------AEPIARIQPAISREPG-SYFFLSHCAGIDTDNHVVHCETVT--DELRTLEP 164 (351)
Q Consensus 111 ~------------~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~v~~~~~~--~~~~~~~~ 164 (351)
. .+..+ ...+.++...+....+ ...+..+|+.++...+.|.++..+ ++.
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~----- 159 (447)
T 2gv8_A 85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGS----- 159 (447)
T ss_dssp CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTC-----
T ss_pred hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCC-----
Confidence 0 00000 0011111111111112 233467888888777766665432 121
Q ss_pred ceeEeeccEEEEecCC--CcCCCCCCCcccc-------ccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEE
Q 018704 165 WKFKISYDKLVIALGA--EASTFGIHGVKEN-------ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235 (351)
Q Consensus 165 ~~~~~~~d~lviAtG~--~p~~p~i~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~V 235 (351)
+..++.||+||+|||. .|+.|.+||.++. ++++..+.+.. ...+++|+|
T Consensus 160 ~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~----------------------~~~~k~VvV 217 (447)
T 2gv8_A 160 PISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPE----------------------LFVGESVLV 217 (447)
T ss_dssp CEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGG----------------------GGTTCCEEE
T ss_pred eeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChh----------------------hcCCCEEEE
Confidence 0126899999999998 6899999997521 33332222211 123469999
Q ss_pred ECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEEEe--CC
Q 018704 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD--SQ 312 (351)
Q Consensus 236 vGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~v~--~~ 312 (351)
||+|++|+|+|..|.+.+ .+ |++++|+..+ ++..||++. ..|+++. +.
T Consensus 218 vG~G~sg~e~A~~l~~~~--------------~~~V~l~~r~~~~--------------l~~~~i~~~-~~v~~~~~~~~ 268 (447)
T 2gv8_A 218 VGGASSANDLVRHLTPVA--------------KHPIYQSLLGGGD--------------IQNESLQQV-PEITKFDPTTR 268 (447)
T ss_dssp ECSSHHHHHHHHHHTTTS--------------CSSEEEECTTCCS--------------CBCSSEEEE-CCEEEEETTTT
T ss_pred EccCcCHHHHHHHHHHHh--------------CCcEEEEeCCCCc--------------CCCCCeEEe-cCeEEEecCCC
Confidence 999999999999999876 77 9999997432 455678743 3588884 46
Q ss_pred eEEecCCcE-EeccEEEEecCCCCc-cc-----cccC
Q 018704 313 KLILNDGTE-VPYGLLVWSTGVGPS-TL-----VKSL 342 (351)
Q Consensus 313 ~v~~~~g~~-~~~D~vi~a~G~~p~-~~-----~~~~ 342 (351)
+|++.||++ +++|.||+|||++|+ +| ++.+
T Consensus 269 ~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~ 305 (447)
T 2gv8_A 269 EIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSP 305 (447)
T ss_dssp EEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCST
T ss_pred EEEECCCCEeccCCEEEECCCCCcCCCCCcccccccc
Confidence 899999987 799999999999999 89 8765
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=213.60 Aligned_cols=245 Identities=12% Similarity=0.123 Sum_probs=151.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccC-----ceEEEEcCCCccccchhhh--hhhcc---------------ccc------
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSL-----YDVVCVSPRNHMVFTPLLA--STCVG---------------TLE------ 112 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g-----~~v~vie~~~~~~~~~~~~--~~~~~---------------~~~------ 112 (351)
..+||+|||||++||++|..|++.| .+|+|||+++.+.|.+... ..... ...
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~ 108 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLH 108 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhh
Confidence 3479999999999999999999999 9999999998776553211 00000 000
Q ss_pred -------------ccccccchhccchhhhcCCCeE-EEEEEeeeEeCC---CCEE--EEEeecC-ccccCCCceeEeecc
Q 018704 113 -------------FRSVAEPIARIQPAISREPGSY-FFLSHCAGIDTD---NHVV--HCETVTD-ELRTLEPWKFKISYD 172 (351)
Q Consensus 113 -------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~---~~~v--~~~~~~~-~~~~~~~~~~~~~~d 172 (351)
.......+.++...+....+.. .+..+|+.++.+ .+.+ .+...+. ++ ..++.||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~------~~~~~~d 182 (463)
T 3s5w_A 109 KHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGE------ELVRTTR 182 (463)
T ss_dssp HTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSC------EEEEEES
T ss_pred hcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCc------eEEEEeC
Confidence 0000111222222233333433 344678888876 4432 4433222 22 2378999
Q ss_pred EEEEecCCCcCCCC-CCCccc--cccccCCHHHH-HHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHH
Q 018704 173 KLVIALGAEASTFG-IHGVKE--NATFLREVHHA-QEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGE 248 (351)
Q Consensus 173 ~lviAtG~~p~~p~-i~g~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~ 248 (351)
+||+|||+.|..|. +++... .+++...+.+. ..+.. .....++|+|||||.+|+|+|..
T Consensus 183 ~lVlAtG~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~vvVvGgG~sg~e~a~~ 245 (463)
T 3s5w_A 183 ALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPC-----------------SSGKPMKIAIIGGGQSAAEAFID 245 (463)
T ss_dssp EEEECCCCEECCCGGGGGGTTCTTEEEGGGHHHHHCC------------------------CEEEEEECCSHHHHHHHHH
T ss_pred EEEECCCCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhh-----------------cccCCCeEEEECCCHhHHHHHHH
Confidence 99999999888775 333322 33443333221 11110 00234699999999999999999
Q ss_pred HHHH--HHHHHHhhhcCCCCccEEEEEeCCC-CCCC--------------------CcHHHHHHHHHHhhh---------
Q 018704 249 LSDF--IMRDVRQRYSHVKDYIHVTLIEANE-ILSS--------------------FDDRLRHYATTQLSK--------- 296 (351)
Q Consensus 249 l~~~--~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~--------------------~~~~~~~~~~~~l~~--------- 296 (351)
|.+. + .+|++++|.. +++. ++++....+.+.+..
T Consensus 246 l~~~~~~--------------~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 311 (463)
T 3s5w_A 246 LNDSYPS--------------VQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTD 311 (463)
T ss_dssp HHHHCTT--------------EEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHH
T ss_pred HHhcCCC--------------CeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHH
Confidence 9987 4 8999999975 4331 122222233333222
Q ss_pred -----------------cCcEEEcCe-EEEEeC--Ce--EEec---CCcE--EeccEEEEecCCCCc---cccccC
Q 018704 297 -----------------SGVRLVRGI-VKDVDS--QK--LILN---DGTE--VPYGLLVWSTGVGPS---TLVKSL 342 (351)
Q Consensus 297 -----------------~gV~~~~~~-v~~v~~--~~--v~~~---~g~~--~~~D~vi~a~G~~p~---~~~~~~ 342 (351)
.||+++.+. |++++. ++ +.+. +|++ +++|.||+|||++|+ +++..+
T Consensus 312 ~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l 387 (463)
T 3s5w_A 312 LIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPL 387 (463)
T ss_dssp HHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGG
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHH
Confidence 599999995 888865 33 5555 6764 899999999999998 566654
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-26 Score=216.90 Aligned_cols=244 Identities=15% Similarity=0.157 Sum_probs=151.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
...+||+|||||||||++|..|++.|++|+|||+.+.+... +. .+.+.+. +...+......+....++.++...
T Consensus 120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~--l~---~gip~~~-~~~~~~~~~~~~l~~~gv~~~~~~ 193 (456)
T 2vdc_G 120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGL--LV---YGIPGFK-LEKSVVERRVKLLADAGVIYHPNF 193 (456)
T ss_dssp SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTH--HH---HTSCTTT-SCHHHHHHHHHHHHHTTCEEETTC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCe--ee---ecCCCcc-CCHHHHHHHHHHHHHCCcEEEeCC
Confidence 45689999999999999999999999999999998764321 11 1222221 112222222222333466665543
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
..+ +.+.+ ++. .+.||+||+|||+. |+.+++||.+ +.+++. ..+...........
T Consensus 194 ~v~-----~~v~~---~~~---------~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a------~~~l~~~~~~~~~~ 250 (456)
T 2vdc_G 194 EVG-----RDASL---PEL---------RRKHVAVLVATGVYKARDIKAPGSGLGNIVAA------LDYLTTSNKVSLGD 250 (456)
T ss_dssp CBT-----TTBCH---HHH---------HSSCSEEEECCCCCEECCTTCSCCTTTTEEEH------HHHHHHHHHHHCTT
T ss_pred Eec-----cEEEh---hHh---------HhhCCEEEEecCCCCCCCCCCCCCcCCCcEEH------HHHHHHhhhhhccc
Confidence 321 11211 111 46799999999997 7888999975 223321 11111111000000
Q ss_pred CCCCCC-HhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-C-CCCCcHHHHHHHHHHh
Q 018704 218 DVPGIS-EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-LSSFDDRLRHYATTQL 294 (351)
Q Consensus 218 ~~p~~~-~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-l~~~~~~~~~~~~~~l 294 (351)
..+... +.....+|+|+|||||++|+|+|..+.+.+. .+|++++|+. . ++..+.+ .+.+
T Consensus 251 ~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga-------------~~Vtiv~r~~~~~~p~~~~e-----~~~~ 312 (456)
T 2vdc_G 251 TVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGA-------------TSVKCLYRRDRKNMPGSQRE-----VAHA 312 (456)
T ss_dssp TCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTC-------------SEEEEECSSCSTTCSSCHHH-----HHHH
T ss_pred ccccccccccccCCCEEEEECCChhHHHHHHHHHHcCC-------------CEEEEEEeCCccCCCCCHHH-----HHHH
Confidence 000000 0011346799999999999999999988761 3699999974 2 5555443 2457
Q ss_pred hhcCcEEEcCe-EEEEeCCe----EEec------------------CC--cEEeccEEEEecCCCCc-c--ccccCCCCC
Q 018704 295 SKSGVRLVRGI-VKDVDSQK----LILN------------------DG--TEVPYGLLVWSTGVGPS-T--LVKSLDLPK 346 (351)
Q Consensus 295 ~~~gV~~~~~~-v~~v~~~~----v~~~------------------~g--~~~~~D~vi~a~G~~p~-~--~~~~~gl~~ 346 (351)
++.||+++++. ++++.+++ |.+. +| .++++|.||+|+|+.|+ . +++.+|+++
T Consensus 313 ~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~ 392 (456)
T 2vdc_G 313 EEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKV 392 (456)
T ss_dssp HHTTCEEECCSSSCCEEEEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCB
T ss_pred HHCCCEEEeCCCceEEeCCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeE
Confidence 77899999984 66654321 2221 23 36899999999999998 3 788889988
Q ss_pred CCCC
Q 018704 347 SPGG 350 (351)
Q Consensus 347 ~~~G 350 (351)
+++|
T Consensus 393 ~~~G 396 (456)
T 2vdc_G 393 TRWG 396 (456)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 8776
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=214.37 Aligned_cols=235 Identities=18% Similarity=0.202 Sum_probs=158.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc--hhhhhhhcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
..+||+||||||||+++|.+|++.|++|+|+|+.....+. ..+.... +.+. . ....+...........++.++..
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~-~~~~-~-~~~~l~~~l~~~~~~~gv~v~~~ 287 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYI-SVPK-T-EGQKLAGALKAHVSDYDVDVIDS 287 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBT-TBSS-B-CHHHHHHHHHHHHHTSCEEEECS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccC-CCCC-C-CHHHHHHHHHHHHHHcCCEEEcC
Confidence 4589999999999999999999999999999874211110 0000000 0000 0 01112222223344557887776
Q ss_pred -EeeeEeCCC---CEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcccc----ccccCCHHHHHHHHHHH
Q 018704 139 -HCAGIDTDN---HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN----ATFLREVHHAQEIRRKL 210 (351)
Q Consensus 139 -~v~~i~~~~---~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~----~~~~~~~~~~~~~~~~~ 210 (351)
+|+.++.+. ..+.+.. .++. .+.||+||+|||+.|+.|++||.++. +..+.... .
T Consensus 288 ~~v~~i~~~~~~~~~~~V~~-~~g~--------~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~------~-- 350 (521)
T 1hyu_A 288 QSASKLVPAATEGGLHQIET-ASGA--------VLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCD------G-- 350 (521)
T ss_dssp CCEEEEECCSSTTSCEEEEE-TTSC--------EEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCC------G--
T ss_pred CEEEEEEeccCCCceEEEEE-CCCC--------EEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCc------h--
Confidence 899998642 2454433 4565 89999999999999999999997531 11111100 0
Q ss_pred HHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHH
Q 018704 211 LLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 290 (351)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~ 290 (351)
....+++|+|||||++|+|+|..|.+.+ .+|+++++.+.+.. + +.+
T Consensus 351 ---------------~~~~~k~V~ViGgG~~g~E~A~~L~~~g--------------~~Vtlv~~~~~l~~-~----~~l 396 (521)
T 1hyu_A 351 ---------------PLFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEMKA-D----QVL 396 (521)
T ss_dssp ---------------GGGBTSEEEEECCSHHHHHHHHHHHHHB--------------SEEEEECSSSSCCS-C----HHH
T ss_pred ---------------hhcCCCeEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEeCcccCc-C----HHH
Confidence 0134579999999999999999999876 89999999753321 2 345
Q ss_pred HHHhhh-cCcEEEcCe-EEEEeCC-----eEEecC---Cc--EEeccEEEEecCCCCc-cccccCCCCCCCCC
Q 018704 291 TTQLSK-SGVRLVRGI-VKDVDSQ-----KLILND---GT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 291 ~~~l~~-~gV~~~~~~-v~~v~~~-----~v~~~~---g~--~~~~D~vi~a~G~~p~-~~~~~~gl~~~~~G 350 (351)
.+.+++ .||+++.+. ++++..+ ++.+.+ |+ ++++|.||+|+|++|+ +|++. +++++++|
T Consensus 397 ~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-~l~~~~~G 468 (521)
T 1hyu_A 397 QDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEG-ALERNRMG 468 (521)
T ss_dssp HHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTT-TSCBCTTS
T ss_pred HHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhh-hhccCCCC
Confidence 566766 699999995 9998753 466653 53 6899999999999999 78876 36666554
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-25 Score=221.13 Aligned_cols=233 Identities=15% Similarity=0.187 Sum_probs=156.8
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
...+||+|||||+||++||..|++.|++|+|||+++.+.+...+.... +....+...+..+... ....++.++...
T Consensus 371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~gv~~~~~~ 446 (671)
T 1ps9_A 371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQI---PGKEEFYETLRYYRRM-IEVTGVTLKLNH 446 (671)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTS---TTCTTHHHHHHHHHHH-HHHHTCEEEESC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccC---CCHHHHHHHHHHHHHH-HHHcCCEEEeCc
Confidence 456899999999999999999999999999999988765543332221 1111111111112111 222355554432
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEe-eccEEEEecCCCcCCCCCCCccc-cccccCCHHHHHHHHHHHHHhhhcc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKI-SYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~-~~d~lviAtG~~p~~p~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
.. ... .+ .||+||||||+.|+.|++||.+. .+++. .+. + ...
T Consensus 447 ~v---------------~~~--------~~~~~d~lviAtG~~p~~~~i~G~~~~~v~~~---~~~------l----~~~ 490 (671)
T 1ps9_A 447 TV---------------TAD--------QLQAFDETILASGIVPRTPPIDGIDHPKVLSY---LDV------L----RDK 490 (671)
T ss_dssp CC---------------CSS--------SSCCSSEEEECCCEEECCCCCBTTTSTTEEEH---HHH------H----TSC
T ss_pred Ee---------------cHH--------HhhcCCEEEEccCCCcCCCCCCCCCCCcEeeH---HHH------h----hCC
Confidence 11 011 34 89999999999999999999753 23322 111 1 001
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHH------HHHhhh----------------cCC-CCccEEEEEe
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR------DVRQRY----------------SHV-KDYIHVTLIE 274 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~------~~~~~~----------------~~~-~~~~~v~~~~ 274 (351)
. ..+++|+|||||++|+|+|..|.+.+.+ ++.+.+ +.. ....+|++++
T Consensus 491 ~---------~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 561 (671)
T 1ps9_A 491 A---------PVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQ 561 (671)
T ss_dssp C---------CCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEEC
T ss_pred C---------CCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEE
Confidence 0 2346999999999999999999876521 111111 111 1236789998
Q ss_pred CCC--CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCCeEEe-cCC--cEEeccEEEEecCCCCc-ccccc
Q 018704 275 ANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLIL-NDG--TEVPYGLLVWSTGVGPS-TLVKS 341 (351)
Q Consensus 275 ~~~--~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~~v~~-~~g--~~~~~D~vi~a~G~~p~-~~~~~ 341 (351)
+.. +...+++.....+.+.+++.||+++++. |++++++++++ .+| +++++|.||+|+|++|+ ++++.
T Consensus 562 ~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~~p~~~l~~~ 635 (671)
T 1ps9_A 562 RKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEPNRALAQP 635 (671)
T ss_dssp SSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCEEECCTTHHH
T ss_pred ecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCccccHHHHHH
Confidence 863 2344666777778888999999999995 99999888877 677 57999999999999999 66654
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-25 Score=220.75 Aligned_cols=224 Identities=16% Similarity=0.107 Sum_probs=153.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
..++||+|||||+|||+||+.|++.|++|+|||+++.+.......... +....+..........+....++.++...
T Consensus 389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 465 (690)
T 3k30_A 389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESAL---PGLSAWGRVKEYREAVLAELPNVEIYRES 465 (690)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTS---TTCGGGGHHHHHHHHHHHTCTTEEEESSC
T ss_pred cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCC---CchhHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 456899999999999999999999999999999988765443322222 22222222222222223333355554321
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCc--------CCCCCCCccc-cccccCCHHHHHHHHHHH
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA--------STFGIHGVKE-NATFLREVHHAQEIRRKL 210 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p--------~~p~i~g~~~-~~~~~~~~~~~~~~~~~~ 210 (351)
.+. ..+.. .+.||+||+|||+.| ..|.+||.+. .+++ ..+.. .
T Consensus 466 ---------~v~---~~~~~--------~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~---~~~~l---~-- 517 (690)
T 3k30_A 466 ---------PMT---GDDIV--------EFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLG---PDDLF---A-- 517 (690)
T ss_dssp ---------CCC---HHHHH--------HTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEEC---HHHHH---T--
T ss_pred ---------eec---HHHHh--------hcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEc---HHHHh---C--
Confidence 111 11222 688999999999984 4678888752 2222 22211 1
Q ss_pred HHhhhccCCCCCCHhhhcccCeEEEEC--CChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCCCc-HHH
Q 018704 211 LLNLMLSDVPGISEEEKSRLLHCVVVG--GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFD-DRL 286 (351)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~~~v~VvG--gG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~~-~~~ 286 (351)
. .. ..+++|+||| +|.+|+|+|..|.+.+ .+|+++++.+ +++... +..
T Consensus 518 -----~-~~--------~~g~~VvViG~ggG~~g~e~A~~L~~~g--------------~~Vtlv~~~~~l~~~~~~~~~ 569 (690)
T 3k30_A 518 -----G-RL--------PDGKKVVVYDDDHYYLGGVVAELLAQKG--------------YEVSIVTPGAQVSSWTNNTFE 569 (690)
T ss_dssp -----T-CC--------CSSSEEEEEECSCSSHHHHHHHHHHHTT--------------CEEEEEESSSSTTGGGGGGTC
T ss_pred -----C-CC--------CCCCEEEEEcCCCCccHHHHHHHHHhCC--------------CeeEEEecccccccccccchh
Confidence 0 11 3346899999 9999999999999887 8999999975 444332 455
Q ss_pred HHHHHHHhhhcCcEEEcCe-EEEEeCCeEEec-----CCcEEeccEEEEecCCCCc-cccccC
Q 018704 287 RHYATTQLSKSGVRLVRGI-VKDVDSQKLILN-----DGTEVPYGLLVWSTGVGPS-TLVKSL 342 (351)
Q Consensus 287 ~~~~~~~l~~~gV~~~~~~-v~~v~~~~v~~~-----~g~~~~~D~vi~a~G~~p~-~~~~~~ 342 (351)
...+.+.+++.||+++.+. |++++.+++.+. +++++++|.||+|+|++|+ .+++.+
T Consensus 570 ~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l 632 (690)
T 3k30_A 570 VNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPREELYLDL 632 (690)
T ss_dssp HHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEECCHHHHHH
T ss_pred HHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCChHHHHHH
Confidence 6778888999999999995 999998876653 4567999999999999999 665543
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-25 Score=220.14 Aligned_cols=229 Identities=16% Similarity=0.132 Sum_probs=146.2
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhh--cCCCeEEEE
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAIS--REPGSYFFL 137 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 137 (351)
...+||+|||||+|||+||..|++.|++|+|||+++.+...........+...+..+...+......+. ...++.+
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i-- 464 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLA-- 464 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEE--
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEE--
Confidence 456899999999999999999999999999999987753221111111111111111111111111110 0112222
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC--------cCCCCCCCccccccccCCHHHHHHHHHH
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE--------ASTFGIHGVKENATFLREVHHAQEIRRK 209 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~--------p~~p~i~g~~~~~~~~~~~~~~~~~~~~ 209 (351)
+. ++.+.+ +++. .+.||+||||||+. |+.|++||.++....+.+..+.. ..
T Consensus 465 ------~~-~~~v~~---~~~~--------~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l--~~- 523 (729)
T 1o94_A 465 ------LG-QKPMTA---DDVL--------QYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVM--DG- 523 (729)
T ss_dssp ------CS-CCCCCH---HHHH--------TSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHH--HC-
T ss_pred ------Ee-CeEEeh---hhcc--------ccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHh--cC-
Confidence 11 122211 2233 68899999999997 56778898752111122222221 11
Q ss_pred HHHhhhccCCCCCCHhhhcccCeEEEEC--CChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--CCcHH
Q 018704 210 LLLNLMLSDVPGISEEEKSRLLHCVVVG--GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--SFDDR 285 (351)
Q Consensus 210 ~~~~~~~~~~p~~~~~~~~~~~~v~VvG--gG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~--~~~~~ 285 (351)
.. ..+++|+||| ||++|+|+|..|.+++ .+|+++++.++++ .++..
T Consensus 524 --------~~--------~~gk~VvVIG~GgG~~g~e~A~~l~~~G--------------~~Vtlv~~~~l~~~~~~~~~ 573 (729)
T 1o94_A 524 --------KK--------KIGKRVVILNADTYFMAPSLAEKLATAG--------------HEVTIVSGVHLANYMHFTLE 573 (729)
T ss_dssp --------CS--------CCCSEEEEEECCCSSHHHHHHHHHHHTT--------------CEEEEEESSCTTHHHHHTTC
T ss_pred --------CC--------CCCCeEEEEcCCCCchHHHHHHHHHHcC--------------CEEEEEeccccccccccccc
Confidence 01 2346999999 9999999999999887 8999999977322 12222
Q ss_pred HHHHHHHHhhhcCcEEEcCe-EEEEeCCeEEec----CC-cE------------------EeccEEEEecCCCCc-cccc
Q 018704 286 LRHYATTQLSKSGVRLVRGI-VKDVDSQKLILN----DG-TE------------------VPYGLLVWSTGVGPS-TLVK 340 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~~-v~~v~~~~v~~~----~g-~~------------------~~~D~vi~a~G~~p~-~~~~ 340 (351)
...+.+.+++.||+++++. |++++.+++.+. ++ ++ +++|.||+|+|++|+ ++++
T Consensus 574 -~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~ 652 (729)
T 1o94_A 574 -YPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWN 652 (729)
T ss_dssp -HHHHHHHHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHH
T ss_pred -HHHHHHHHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHH
Confidence 4567788889999999995 999998776542 33 33 899999999999999 6665
Q ss_pred cC
Q 018704 341 SL 342 (351)
Q Consensus 341 ~~ 342 (351)
.+
T Consensus 653 ~l 654 (729)
T 1o94_A 653 EL 654 (729)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-24 Score=203.93 Aligned_cols=250 Identities=14% Similarity=0.146 Sum_probs=150.8
Q ss_pred CCcEEEECCchhHHHHHHhhhc-c------CceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT-S------LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSY 134 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~-~------g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
++||+||||||||+++|..|++ . |++|+|||+.+..... +..+.. +... ....+...........++.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~-~~~gv~---p~~~-~~~~~~~~~~~~~~~~~v~ 77 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL-VRSGVA---PDHP-KIKSISKQFEKTAEDPRFR 77 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTH-HHHTSC---TTCT-GGGGGHHHHHHHHTSTTEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCc-cccccC---CCCC-CHHHHHHHHHHHHhcCCCE
Confidence 4799999999999999999999 7 9999999998764321 111111 1111 1122222223334455777
Q ss_pred EEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCCCCcc-ccccccCCHHHHHHHHHHHHH
Q 018704 135 FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLL 212 (351)
Q Consensus 135 ~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~ 212 (351)
++.. +. + .+.+.+ .++ .+.||+||+|||+. |+.+++||.+ +.++ ++..+..++..
T Consensus 78 ~~~~-v~-v---~~~v~~---~~~---------~~~~d~lViAtG~~~~~~~~ipG~~~~gv~------~~~~~~~~~~~ 134 (456)
T 1lqt_A 78 FFGN-VV-V---GEHVQP---GEL---------SERYDAVIYAVGAQSDRMLNIPGEDLPGSI------AAVDFVGWYNA 134 (456)
T ss_dssp EEES-CC-B---TTTBCH---HHH---------HHHSSEEEECCCCCEECCCCCTTTTSTTEE------EHHHHHHHHTT
T ss_pred EEee-EE-E---CCEEEE---CCC---------eEeCCEEEEeeCCCCCCCCCCCCCCCCCcE------EHHHHHhhhhc
Confidence 7654 22 2 122322 112 57899999999997 7888999975 2222 23333333211
Q ss_pred hhhc-cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHH--------HHHhhhcCCCCccEEEEEeCCC-CCCCC
Q 018704 213 NLML-SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR--------DVRQRYSHVKDYIHVTLIEANE-ILSSF 282 (351)
Q Consensus 213 ~~~~-~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~-~l~~~ 282 (351)
..+. ...+ ....++|+|||+|++|+|+|..|.+.+.+ .+.+.... ....+|+++.|+. +...+
T Consensus 135 ~~d~~~~~~------~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~-~g~~~V~lv~r~~~~~~~f 207 (456)
T 1lqt_A 135 HPHFEQVSP------DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRP-RGIQEVVIVGRRGPLQAAF 207 (456)
T ss_dssp CGGGTTCCC------CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTT-CCCCEEEEECSSCGGGCCC
T ss_pred Ccccccchh------hcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHH-CCCcEEEEEecCChhhhcc
Confidence 1111 1111 01357999999999999999999874310 00000000 0114899999974 32222
Q ss_pred c-------------------HHH------------------HHHHHHHhhh------cCcEEEcCe-EEEEeCC----eE
Q 018704 283 D-------------------DRL------------------RHYATTQLSK------SGVRLVRGI-VKDVDSQ----KL 314 (351)
Q Consensus 283 ~-------------------~~~------------------~~~~~~~l~~------~gV~~~~~~-v~~v~~~----~v 314 (351)
. .++ .+.+.+.+++ +||+++++. ++++.++ +|
T Consensus 208 ~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v 287 (456)
T 1lqt_A 208 TTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERI 287 (456)
T ss_dssp CHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEE
T ss_pred ChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEE
Confidence 1 111 2344555555 799999995 8888764 36
Q ss_pred Eec----------------CC--cEEeccEEEEecCCCCccccccCCCCCCCC
Q 018704 315 ILN----------------DG--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPG 349 (351)
Q Consensus 315 ~~~----------------~g--~~~~~D~vi~a~G~~p~~~~~~~gl~~~~~ 349 (351)
++. +| ++++||.||+|+|++|+++ .|+++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~l---~gl~~d~~ 337 (456)
T 1lqt_A 288 VLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPT---PGLPFDDQ 337 (456)
T ss_dssp EEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCCC---TTSCCBTT
T ss_pred EEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCCC---CCCcccCC
Confidence 664 34 4689999999999999973 34555543
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-24 Score=220.92 Aligned_cols=238 Identities=17% Similarity=0.180 Sum_probs=157.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhc-ccccccccccchhccchhhhcCCCeEEEE-EE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV-GTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (351)
.+||||||||||||+||.+|++.|++|+|||+++.+..... . +. ..................+....++.++. .+
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~-~--~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~ 204 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL-D--TAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTT 204 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG-G--SSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec-c--CCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCE
Confidence 47899999999999999999999999999999876542221 1 10 00111101111122223334445676654 47
Q ss_pred eeeEeCCCCEEEEEeecCccccC-------CCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHH
Q 018704 140 CAGIDTDNHVVHCETVTDELRTL-------EPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLL 211 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~-------~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~ 211 (351)
|..++.......++...+ .... ..+...+.||+||||||+.|+.|++||.+ +.+++...+ ..+.+.
T Consensus 205 V~~i~~~~~~~~v~~~~~-~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~~gv~~~~~~---~~~l~~-- 278 (965)
T 2gag_A 205 VFGSYDANYLIAAQRRTV-HLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDRPGIMLAGAV---RSYLNR-- 278 (965)
T ss_dssp EEEEETTTEEEEEEECST-TCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCSTTEEEHHHH---HHHHHT--
T ss_pred EEeeecCCceeeeEeecc-cccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCCCCEEEhHHH---HHHHHh--
Confidence 888876654433322111 0000 01123789999999999999999999975 334433222 221111
Q ss_pred HhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHH
Q 018704 212 LNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291 (351)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~ 291 (351)
... ..+++++|||+|++|+|+|..|.+++ .+|+++++.+.+. +. .
T Consensus 279 ----~~~---------~~gk~vvViGgG~~g~E~A~~L~~~G--------------~~Vtvv~~~~~~~---~~-----~ 323 (965)
T 2gag_A 279 ----YGV---------RAGARIAVATTNDSAYELVRELAATG--------------GVVAVIDARSSIS---AA-----A 323 (965)
T ss_dssp ----TCE---------ESCSSEEEEESSTTHHHHHHHHGGGT--------------CCSEEEESCSSCC---HH-----H
T ss_pred ----cCC---------CCCCeEEEEcCCHHHHHHHHHHHHcC--------------CcEEEEECCCccc---hh-----H
Confidence 011 23469999999999999999999887 7899999975332 12 4
Q ss_pred HHhhhcCcEEEcCe-EEEEeC--C----eEEecC-------C--cEEeccEEEEecCCCCc-cccccCC
Q 018704 292 TQLSKSGVRLVRGI-VKDVDS--Q----KLILND-------G--TEVPYGLLVWSTGVGPS-TLVKSLD 343 (351)
Q Consensus 292 ~~l~~~gV~~~~~~-v~~v~~--~----~v~~~~-------g--~~~~~D~vi~a~G~~p~-~~~~~~g 343 (351)
+.+++.||+++.+. |+++.. + +|++.+ | +++++|.||+|+|++|+ ++++.++
T Consensus 324 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~~ 392 (965)
T 2gag_A 324 AQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQRQ 392 (965)
T ss_dssp HHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHTT
T ss_pred HHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhCC
Confidence 66788999999995 999875 2 577764 5 57999999999999999 7776554
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-24 Score=202.43 Aligned_cols=250 Identities=15% Similarity=0.126 Sum_probs=148.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
+++|+|||||++|+++|..|++.| ++|+|||+.+... ..+..+ + .+.+. ....+...........++.++...
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~g-g~~~~g-~--~p~~~-~~~~~~~~~~~~~~~~gv~~~~~~ 80 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF-GLVRFG-V--APDHP-EVKNVINTFTQTARSDRCAFYGNV 80 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC-THHHHT-S--CTTCG-GGGGHHHHHHHHHTSTTEEEEBSC
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCC-ceeecc-c--CCCCc-cHHHHHHHHHHHHHhCCcEEEeee
Confidence 479999999999999999999988 9999999987753 111111 1 11111 112222222333445577766542
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCc-CCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p-~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
.. .+.+.+ .+ . .+.||+||+|||+.| +.|++||.+ +.+++. ..+..++....+..
T Consensus 81 ~v-----~~~V~~---~~-~--------~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~------~~~~~~~~~~~d~~ 137 (460)
T 1cjc_A 81 EV-----GRDVTV---QE-L--------QDAYHAVVLSYGAEDHQALDIPGEELPGVFSA------RAFVGWYNGLPENR 137 (460)
T ss_dssp CB-----TTTBCH---HH-H--------HHHSSEEEECCCCCEECCCCCTTTTSTTEEEH------HHHHHHHTTCGGGT
T ss_pred EE-----eeEEEe---cc-c--------eEEcCEEEEecCcCCCCCCCCCCCCCCcEEEH------HHHHHHhhcCcccc
Confidence 22 122221 11 2 578999999999995 888999975 233332 22222221111111
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHH---------hhhcCCCCcc-EEEEEeCCCC---------
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR---------QRYSHVKDYI-HVTLIEANEI--------- 278 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~---------~~~~~~~~~~-~v~~~~~~~~--------- 278 (351)
..+. ...+++++|||+|++|+|+|..|.+.. +++. +... ..+. +|+++.|+..
T Consensus 138 ~~~~-----~~~~~~vvVIGgG~~g~e~A~~L~~~~-~~l~~tdi~~~a~~~l~--~~g~~~V~lv~r~~~~~~~ft~~e 209 (460)
T 1cjc_A 138 ELAP-----DLSCDTAVILGQGNVALDVARILLTPP-DHLEKTDITEAALGALR--QSRVKTVWIVGRRGPLQVAFTIKE 209 (460)
T ss_dssp TCCC-----CTTSSEEEEESCSHHHHHHHHHHHSCG-GGGTTSCCCHHHHHHHH--TCCCCEEEEECSSCGGGCCCCHHH
T ss_pred cccc-----CCCCCEEEEECCCHHHHHHHHHHhhch-hhhccccccHHHHHHHh--hCCCcEEEEEEcCChHhhccCHHH
Confidence 1110 013579999999999999999998411 0000 0000 1124 7999999742
Q ss_pred ------CCCC-------------------cH---HHHHHHHHHhhh--------------cCcEEEcCe-EEEEeCC---
Q 018704 279 ------LSSF-------------------DD---RLRHYATTQLSK--------------SGVRLVRGI-VKDVDSQ--- 312 (351)
Q Consensus 279 ------l~~~-------------------~~---~~~~~~~~~l~~--------------~gV~~~~~~-v~~v~~~--- 312 (351)
++.. +. .+.+.+.+.+++ .||+++++. +.++..+
T Consensus 210 l~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~ 289 (460)
T 1cjc_A 210 LREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDG 289 (460)
T ss_dssp HHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTS
T ss_pred HHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCC
Confidence 2211 00 023344445545 899999995 8888643
Q ss_pred ----eEEec---------------CC--cEEeccEEEEecCCCCccccccCCC-CCCCCC
Q 018704 313 ----KLILN---------------DG--TEVPYGLLVWSTGVGPSTLVKSLDL-PKSPGG 350 (351)
Q Consensus 313 ----~v~~~---------------~g--~~~~~D~vi~a~G~~p~~~~~~~gl-~~~~~G 350 (351)
+|++. +| ++++||.||+|+|++|+++ .|+ ++|++|
T Consensus 290 ~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~l---~gl~~~d~~g 346 (460)
T 1cjc_A 290 RRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPI---DPSVPFDPKL 346 (460)
T ss_dssp SSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCCC---CTTSCCBTTT
T ss_pred ceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCCC---CCCcccccCC
Confidence 25543 34 4799999999999999973 466 666543
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-22 Score=192.64 Aligned_cols=187 Identities=12% Similarity=0.087 Sum_probs=118.4
Q ss_pred CCCCCCCcEEEECCchhHHHHHHhhhcc--------------CceEEEEcCCCccccchhh--hhhhcccc---------
Q 018704 57 TKANEKPRVVVLGSGWAGCRLMKGIDTS--------------LYDVVCVSPRNHMVFTPLL--ASTCVGTL--------- 111 (351)
Q Consensus 57 ~~~~~~~~VvIIG~G~aGl~aA~~L~~~--------------g~~v~vie~~~~~~~~~~~--~~~~~~~~--------- 111 (351)
++....+||||||+||+||++|..|.+. +...+.+|+++.+.|++.. ++......
T Consensus 34 tp~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~ 113 (501)
T 4b63_A 34 TPQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLR 113 (501)
T ss_dssp CCTTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTT
T ss_pred CCCCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhcccc
Confidence 3445568999999999999999999753 3467899999887776422 22111110
Q ss_pred -------------------------cccccccchhccchhhhcCCCe-EEEEEEeeeEeCCC--------CEEEEEee--
Q 018704 112 -------------------------EFRSVAEPIARIQPAISREPGS-YFFLSHCAGIDTDN--------HVVHCETV-- 155 (351)
Q Consensus 112 -------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~--------~~v~~~~~-- 155 (351)
.+......+.++...++...+. ..+..+|+.+.... ..|.++..
T Consensus 114 ~P~s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~ 193 (501)
T 4b63_A 114 DPRSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNV 193 (501)
T ss_dssp CTTCTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEET
T ss_pred CCCCccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecC
Confidence 0001112233333334444332 34556777775422 23555432
Q ss_pred cCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEE
Q 018704 156 TDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~V 235 (351)
..++ ..++.+++||+|||..|.+|.+++....+++...+.+...... .....+|+|+|
T Consensus 194 ~~g~------~~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~----------------~~~~~gKrV~V 251 (501)
T 4b63_A 194 ETGE------ISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALL----------------KDKSKPYNIAV 251 (501)
T ss_dssp TTCC------EEEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHS----------------CCTTSCCEEEE
T ss_pred CCce------EEEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhcc----------------ccccCCcEEEE
Confidence 2333 3478999999999998998877766566777666554332111 01145679999
Q ss_pred ECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 236 vGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
||+|.||+|++.+|++.. ...+|+++.|+.
T Consensus 252 VG~G~SA~ei~~~L~~~~------------~~~~v~~~~R~~ 281 (501)
T 4b63_A 252 LGSGQSAAEIFHDLQKRY------------PNSRTTLIMRDS 281 (501)
T ss_dssp ECCSHHHHHHHHHHHHHS------------TTCEEEEECSSS
T ss_pred ECCcHHHHHHHHHHHhcC------------CCceEEEEeCCC
Confidence 999999999999997641 237899999974
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=203.04 Aligned_cols=172 Identities=14% Similarity=0.155 Sum_probs=107.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchh---hhhhhccc------cc----------ccc---cccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL---LASTCVGT------LE----------FRS---VAEP 119 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~---~~~~~~~~------~~----------~~~---~~~~ 119 (351)
.+||+|||||++|+++|..|++.|++|+|||+++....... .++..... .. +.. ....
T Consensus 16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 95 (542)
T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE 95 (542)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHH
Confidence 47999999999999999999999999999999875421110 00000000 00 000 0011
Q ss_pred hhccchhhhcCCC---eEEEEEEeeeEeCCC--CEEEEEeecCccccCCCceeEeeccEEEEecCC--CcCCCCCCCccc
Q 018704 120 IARIQPAISREPG---SYFFLSHCAGIDTDN--HVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHGVKE 192 (351)
Q Consensus 120 ~~~~~~~~~~~~~---~~~~~~~v~~i~~~~--~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~p~~p~i~g~~~ 192 (351)
+.++...+....+ ...+..+|+.++.+. ..|.++. .+|+ ++.||+||+|||. .|+.|.+||++.
T Consensus 96 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~-~~G~--------~~~ad~vV~AtG~~s~p~~p~i~G~~~ 166 (542)
T 1w4x_A 96 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT-NHGD--------RIRARYLIMASGQLSVPQLPNFPGLKD 166 (542)
T ss_dssp HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEE-TTCC--------EEEEEEEEECCCSCCCCCCCCCTTGGG
T ss_pred HHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEE-CCCC--------EEEeCEEEECcCCCCCCCCCCCCCccc
Confidence 1112111122111 223355777776543 4666654 4565 7999999999994 688999999753
Q ss_pred c---ccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE
Q 018704 193 N---ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH 269 (351)
Q Consensus 193 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~ 269 (351)
. .++...+.+ ... ...+|+|+|||+|.+|+|++..|...+ .+
T Consensus 167 f~G~~~hs~~~~~--------------~~~-------~~~gk~V~VIG~G~sg~e~a~~l~~~~--------------~~ 211 (542)
T 1w4x_A 167 FAGNLYHTGNWPH--------------EPV-------DFSGQRVGVIGTGSSGIQVSPQIAKQA--------------AE 211 (542)
T ss_dssp CCSEEEEGGGCCS--------------SCC-------CCBTCEEEEECCSHHHHHHHHHHHHHB--------------SE
T ss_pred CCCceEECCCCCC--------------chh-------ccCCCEEEEECCCccHHHHHHHHhhcC--------------ce
Confidence 1 122211110 000 024579999999999999999999876 89
Q ss_pred EEEEeCCC
Q 018704 270 VTLIEANE 277 (351)
Q Consensus 270 v~~~~~~~ 277 (351)
|++++|.+
T Consensus 212 vtv~~r~~ 219 (542)
T 1w4x_A 212 LFVFQRTP 219 (542)
T ss_dssp EEEEESSC
T ss_pred EEEEEcCC
Confidence 99999864
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-23 Score=214.50 Aligned_cols=241 Identities=12% Similarity=0.101 Sum_probs=152.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
..+||+|||||||||+||.+|++.|+ +|+|||+++.+... + ..+.+.+. +.....++...+....++.++...
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~--~---~~~ip~~~-~~~~~~~~~~~~~~~~gv~~~~~~ 259 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL--S---TSEIPQFR-LPYDVVNFEIELMKDLGVKIICGK 259 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTH--H---HHTSCTTT-SCHHHHHHHHHHHHTTTCEEEESC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcc--c---cccCCccc-CCHHHHHHHHHHHHHCCcEEEccc
Confidence 45799999999999999999999999 79999998764322 1 11222222 111122222233445578877665
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC-cCCCCC-CCcc--ccccccCCHHHHHHHHHHHHHhh-
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGI-HGVK--ENATFLREVHHAQEIRRKLLLNL- 214 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~-p~~p~i-~g~~--~~~~~~~~~~~~~~~~~~~~~~~- 214 (351)
.... +.+.+ +++. .+.||+||||||+. |+.+++ +|++ +++++. .++....+......
T Consensus 260 ~v~~----~~v~~---~~~~--------~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a---~~~L~~~~~~~~~~~ 321 (1025)
T 1gte_A 260 SLSE----NEITL---NTLK--------EEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTS---KDFLPLVAKSSKAGM 321 (1025)
T ss_dssp CBST----TSBCH---HHHH--------HTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEH---HHHHHHHHHHHCBTT
T ss_pred Eecc----ceEEh---hhcC--------ccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEh---HHHHHHHHhhccccc
Confidence 4421 22322 2232 57899999999994 887764 4553 233322 22221111110000
Q ss_pred --hccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCCCcHHHHHHH
Q 018704 215 --MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYA 290 (351)
Q Consensus 215 --~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~l~~~~~~~~~~~ 290 (351)
.....| ...++|+|||||++|+|+|..+.++|. .+|++++|.. .++.++.++
T Consensus 322 ~~~~~~~~-------~~~~~VvVIGgG~~g~e~A~~~~~~G~-------------~~Vtvv~r~~~~~~~~~~~e~---- 377 (1025)
T 1gte_A 322 CACHSPLP-------SIRGAVIVLGAGDTAFDCATSALRCGA-------------RRVFLVFRKGFVNIRAVPEEV---- 377 (1025)
T ss_dssp BSCCCCCC-------CCCSEEEEECSSHHHHHHHHHHHHTTC-------------SEEEEECSSCGGGCCSCHHHH----
T ss_pred cccccccc-------ccCCcEEEECCChHHHHHHHHHHHcCC-------------CEEEEEEecChhhCCCCHHHH----
Confidence 000111 123599999999999999999998771 3899999974 566666554
Q ss_pred HHHhhhcCcEEEcCe-EEEEeC--Ce---EEec------CC---------cEEeccEEEEecCCCCc--cccccC-CCCC
Q 018704 291 TTQLSKSGVRLVRGI-VKDVDS--QK---LILN------DG---------TEVPYGLLVWSTGVGPS--TLVKSL-DLPK 346 (351)
Q Consensus 291 ~~~l~~~gV~~~~~~-v~~v~~--~~---v~~~------~g---------~~~~~D~vi~a~G~~p~--~~~~~~-gl~~ 346 (351)
+.+++.||+++.+. ++++.. ++ |++. +| .++++|.||+|+|++|+ .|+.++ |+++
T Consensus 378 -~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~ 456 (1025)
T 1gte_A 378 -ELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKF 456 (1025)
T ss_dssp -HHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCB
T ss_pred -HHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceE
Confidence 45677899999984 777753 32 3332 23 36899999999999864 677664 7888
Q ss_pred CCCC
Q 018704 347 SPGG 350 (351)
Q Consensus 347 ~~~G 350 (351)
|++|
T Consensus 457 ~~~G 460 (1025)
T 1gte_A 457 NRWD 460 (1025)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 7666
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-23 Score=200.20 Aligned_cols=209 Identities=16% Similarity=0.156 Sum_probs=142.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhh-hhcccccccccccchhccchhhhcCCCeEE-EEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS-TCVGTLEFRSVAEPIARIQPAISREPGSYF-FLSH 139 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 139 (351)
.+||+|||||++||++|.+|++. ++|+|||+++...+...... ...+... ........+...+ ..++.+ ....
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~--~~~~~~~~l~~~l--~~~v~~~~~~~ 182 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNK--DSRKVVEELVGKL--NENTKIYLETS 182 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTE--EHHHHHHHHHHTC--CTTEEEETTEE
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCC--CHHHHHHHHHHHH--hcCCEEEcCCE
Confidence 46999999999999999999999 99999999887644321110 0001110 1111112222222 346664 3468
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (351)
|..++.+.+.+.+...++++ ...+.||+||+|||+.|+.|++||.+ +.+++ ..++..+.+.. ..
T Consensus 183 v~~i~~~~~~~~~~~~~~~~------~~~~~~d~lvlAtGa~~~~~~~~g~~~~gv~~---~~~~~~~~~~~------~~ 247 (493)
T 1y56_A 183 ALGVFDKGEYFLVPVVRGDK------LIEILAKRVVLATGAIDSTMLFENNDMPGVFR---RDFALEVMNVW------EV 247 (493)
T ss_dssp ECCCEECSSSEEEEEEETTE------EEEEEESCEEECCCEEECCCCCTTTTSTTEEE---HHHHHHHHHTS------CB
T ss_pred EEEEEcCCcEEEEEEecCCe------EEEEECCEEEECCCCCccCCCCCCCCCCCEEE---cHHHHHHHHhc------cc
Confidence 88888887766554333332 23689999999999999999999975 33433 22333222210 11
Q ss_pred CCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcC
Q 018704 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSG 298 (351)
Q Consensus 219 ~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~g 298 (351)
...++++|||+|++|+| +.+++.|
T Consensus 248 ---------~~~~~vvViGgG~~gle-----------------------------------------------~~l~~~G 271 (493)
T 1y56_A 248 ---------APGRKVAVTGSKADEVI-----------------------------------------------QELERWG 271 (493)
T ss_dssp ---------CSCSEEEEESTTHHHHH-----------------------------------------------HHHHHHT
T ss_pred ---------CCCCEEEEECCCHHHHH-----------------------------------------------HHHHhCC
Confidence 23469999999999877 2345679
Q ss_pred cEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCCCCc-cccccCCCCC
Q 018704 299 VRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPK 346 (351)
Q Consensus 299 V~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~ 346 (351)
|+++.+. |+++..+ .+.+.+|+++++|.||+|+|++|+ ++++.+|+++
T Consensus 272 V~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~ 325 (493)
T 1y56_A 272 IDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKL 325 (493)
T ss_dssp CEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCE
T ss_pred cEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCc
Confidence 9999995 9998764 477888999999999999999999 7998888764
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.9e-12 Score=103.30 Aligned_cols=100 Identities=22% Similarity=0.354 Sum_probs=81.5
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC---------CCC-----cHHHHHHHHHHhhh
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL---------SSF-----DDRLRHYATTQLSK 296 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l---------~~~-----~~~~~~~~~~~l~~ 296 (351)
+++|||||++|+++|..|.+.+ .+|+++++.+ .+ +.+ +.++.+.+.+.+++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g--------------~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 68 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAG--------------LKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARR 68 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999877 8999999864 33 223 46788889999999
Q ss_pred cCcEEEcCeEEEEeC--C--eEEecCCcEEeccEEEEecCCCCccccccCCCCCC
Q 018704 297 SGVRLVRGIVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKS 347 (351)
Q Consensus 297 ~gV~~~~~~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~~~ 347 (351)
.||+++.++|++++. + .+.+++| ++++|.||+|+|.+|+ +++.+|++.+
T Consensus 69 ~gv~v~~~~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~-~~~~~g~~~~ 121 (180)
T 2ywl_A 69 YGAEVRPGVVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT-LPSLLGLTRR 121 (180)
T ss_dssp TTCEEEECCCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCH-HHHHHTCCEE
T ss_pred cCCEEEeCEEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCC-ccccCCCCcc
Confidence 999999998777764 2 4666777 8999999999999986 3455666654
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-11 Score=104.16 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=73.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhccccccccc-----------ccchhccc-hhhhc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSV-----------AEPIARIQ-PAISR 129 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~ 129 (351)
.+||+|||||++|+++|..|++.|.+|+|||+.......+.. ...+......+ ...+.... ..+..
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~ 80 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFL--PPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG 80 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSS--CCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccC--ccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHc
Confidence 489999999999999999999999999999997321110000 00000000000 00111222 22333
Q ss_pred CCCeEEEEEEeeeEeCCCCEE-EEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCc
Q 018704 130 EPGSYFFLSHCAGIDTDNHVV-HCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV 190 (351)
Q Consensus 130 ~~~~~~~~~~v~~i~~~~~~v-~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~ 190 (351)
..++.++..+|+.+..+...+ .+. ..++. ++.+|.||+|||.......++|.
T Consensus 81 ~~gv~i~~~~v~~i~~~~~~v~~v~-~~~g~--------~i~a~~VV~A~G~~s~~~~~~G~ 133 (232)
T 2cul_A 81 LRPLHLFQATATGLLLEGNRVVGVR-TWEGP--------PARGEKVVLAVGSFLGARLFLGG 133 (232)
T ss_dssp CTTEEEEECCEEEEEEETTEEEEEE-ETTSC--------CEECSEEEECCTTCSSCEEEETT
T ss_pred CCCcEEEEeEEEEEEEeCCEEEEEE-ECCCC--------EEECCEEEECCCCChhhceecCC
Confidence 348888888899988765554 333 24555 79999999999997655444554
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-11 Score=118.20 Aligned_cols=120 Identities=17% Similarity=0.213 Sum_probs=74.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc-cccc---hhhhh-----------hhccc---------cccccc-
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH-MVFT---PLLAS-----------TCVGT---------LEFRSV- 116 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~-~~~~---~~~~~-----------~~~~~---------~~~~~~- 116 (351)
.+||+|||||+||++||..|++.|.+|+|||+... .... +...+ ...+. ..+..+
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~ 107 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILN 107 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEES
T ss_pred cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhh
Confidence 58999999999999999999999999999998742 1110 00000 00000 000000
Q ss_pred ------c---------cchhcc-chhhhcCCCeEEEEEEeeeEeCCCCEE-EEEeecCccccCCCceeEeeccEEEEecC
Q 018704 117 ------A---------EPIARI-QPAISREPGSYFFLSHCAGIDTDNHVV-HCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 117 ------~---------~~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~v-~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
. ..+... ...+....++.++..+|+.+..+.+.+ .+.. .+|. .+.+|.||+|||
T Consensus 108 ~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t-~dG~--------~I~Ad~VVLATG 178 (651)
T 3ces_A 108 ASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVT-QMGL--------KFRAKAVVLTVG 178 (651)
T ss_dssp TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEE-TTSE--------EEEEEEEEECCS
T ss_pred cccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEE-CCCC--------EEECCEEEEcCC
Confidence 0 001111 122223368888888999997665544 3332 4555 899999999999
Q ss_pred CCcCCCCCCCc
Q 018704 180 AEASTFGIHGV 190 (351)
Q Consensus 180 ~~p~~p~i~g~ 190 (351)
..+..+.++|.
T Consensus 179 t~s~~~~i~G~ 189 (651)
T 3ces_A 179 TFLDGKIHIGL 189 (651)
T ss_dssp TTTCCEEECC-
T ss_pred CCccCccccCc
Confidence 99887777775
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=8.2e-12 Score=116.53 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=33.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+||+|||||++|+++|+.|++.|.+|+|||+.+..
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 479999999999999999999999999999988754
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=7.8e-11 Score=97.25 Aligned_cols=110 Identities=17% Similarity=0.166 Sum_probs=70.3
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccch-hhhhhhcccccccccccchhccchhhhcCCCeEEEEEEee
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCA 141 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 141 (351)
+||+|||||++|+.+|..|++.|.+|+|+|+.+...... .+.. ..+.+. ......+.+.........++.++..+|+
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~~~~~~gv~v~~~~v~ 79 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPN-YPGLLD-EPSGEELLRRLEAHARRYGAEVRPGVVK 79 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCC-STTCTT-CCCHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhc-cCCCcC-CCCHHHHHHHHHHHHHHcCCEEEeCEEE
Confidence 689999999999999999999999999999877432110 0000 000000 0001122222222333446777666888
Q ss_pred eEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC
Q 018704 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 142 ~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
.++.+...+.+.. +++ ++.+|.||+|+|..|..
T Consensus 80 ~i~~~~~~~~v~~-~~g---------~i~ad~vI~A~G~~~~~ 112 (180)
T 2ywl_A 80 GVRDMGGVFEVET-EEG---------VEKAERLLLCTHKDPTL 112 (180)
T ss_dssp EEEECSSSEEEEC-SSC---------EEEEEEEEECCTTCCHH
T ss_pred EEEEcCCEEEEEE-CCC---------EEEECEEEECCCCCCCc
Confidence 8887666565543 222 68999999999998754
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-10 Score=111.86 Aligned_cols=120 Identities=15% Similarity=0.151 Sum_probs=75.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC-ccccc---hhhhh---------h--hccc---------cccc---
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN-HMVFT---PLLAS---------T--CVGT---------LEFR--- 114 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~-~~~~~---~~~~~---------~--~~~~---------~~~~--- 114 (351)
.+||+|||||+||++||..|++.|.+|+|||++. ..... +...+ . ..+. ..+.
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~ 106 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLN 106 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEES
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeecc
Confidence 4899999999999999999999999999999874 21110 00000 0 0000 0000
Q ss_pred ----ccc---------cchhc-cchhhhcCCCeEEEEEEeeeEeCCCCEEE-EEeecCccccCCCceeEeeccEEEEecC
Q 018704 115 ----SVA---------EPIAR-IQPAISREPGSYFFLSHCAGIDTDNHVVH-CETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 115 ----~~~---------~~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~v~-~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
... ..+.. +...+....++.++...|+.+..+.+.+. +.. .+|. .+.++.||+|||
T Consensus 107 ~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t-~dG~--------~i~AdaVVLATG 177 (637)
T 2zxi_A 107 TRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRT-NLGV--------EYKTKAVVVTTG 177 (637)
T ss_dssp TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEE-TTSC--------EEECSEEEECCT
T ss_pred cccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEE-CCCc--------EEEeCEEEEccC
Confidence 000 00111 11223333688888889999887666543 333 4565 899999999999
Q ss_pred CCcCCCCCCCc
Q 018704 180 AEASTFGIHGV 190 (351)
Q Consensus 180 ~~p~~p~i~g~ 190 (351)
..+..+.++|.
T Consensus 178 ~~s~~~~~~G~ 188 (637)
T 2zxi_A 178 TFLNGVIYIGD 188 (637)
T ss_dssp TCBTCEEEETT
T ss_pred CCccCceeccc
Confidence 99887777775
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-12 Score=115.82 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=33.3
Q ss_pred CCCcEEEECCchhHHHHHHhhh--ccCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGID--TSLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~--~~g~~v~vie~~~~~~ 98 (351)
..+||+|||||||||+||++|+ +.|++|+|||+++...
T Consensus 64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~G 103 (326)
T 3fpz_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG 103 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence 3579999999999999999996 4699999999987643
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.99 E-value=6e-10 Score=104.33 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=33.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||+|||||++|+++|+.|++.|.+|+|+|+.+..
T Consensus 26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~ 62 (417)
T 3v76_A 26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAP 62 (417)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4589999999999999999999999999999988754
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.98 E-value=4e-10 Score=109.69 Aligned_cols=120 Identities=16% Similarity=0.262 Sum_probs=74.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc-cccc---hhhhh-----------hhccc---------ccccc-
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH-MVFT---PLLAS-----------TCVGT---------LEFRS- 115 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~-~~~~---~~~~~-----------~~~~~---------~~~~~- 115 (351)
..+||+|||||+||++||..|++.|.+|+|||+... .... +...+ ...+. ..+..
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l 99 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRML 99 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhc
Confidence 358999999999999999999999999999998742 1110 00000 00000 00000
Q ss_pred -------c------c---cchhccchhhhcCCCeEEEEEEeeeEeCCCCEEE-EEeecCccccCCCceeEeeccEEEEec
Q 018704 116 -------V------A---EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVH-CETVTDELRTLEPWKFKISYDKLVIAL 178 (351)
Q Consensus 116 -------~------~---~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~v~-~~~~~~~~~~~~~~~~~~~~d~lviAt 178 (351)
+ . .....+...+...+++.++...|+.+..+...+. +.. .+|. .+.+|.||+||
T Consensus 100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t-~~G~--------~i~Ad~VVLAT 170 (641)
T 3cp8_A 100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTV-RSGR--------AIQAKAAILAC 170 (641)
T ss_dssp CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEE-TTSC--------EEEEEEEEECC
T ss_pred ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEE-CCCc--------EEEeCEEEECc
Confidence 0 0 0011112223334688888888988877666654 433 4555 89999999999
Q ss_pred CCCcCCCCCCC
Q 018704 179 GAEASTFGIHG 189 (351)
Q Consensus 179 G~~p~~p~i~g 189 (351)
|..++.+.++|
T Consensus 171 G~~s~~~i~~G 181 (641)
T 3cp8_A 171 GTFLNGLIHIG 181 (641)
T ss_dssp TTCBTCEEEET
T ss_pred CCCCCccceee
Confidence 99876554444
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.5e-10 Score=106.06 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=34.5
Q ss_pred CCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 59 ~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
....+||+|||||++||++|+.|++.|++|+|||+.+.
T Consensus 104 ~~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~ 141 (549)
T 3nlc_A 104 ENLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE 141 (549)
T ss_dssp TTCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCC
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCc
Confidence 34568999999999999999999999999999998864
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-08 Score=93.20 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCC--cEEeccEEEEecCCCCccccccC-CCC
Q 018704 283 DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDG--TEVPYGLLVWSTGVGPSTLVKSL-DLP 345 (351)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~-gl~ 345 (351)
+..+.+.+.+.+++.|++++++. |+++.. + .|.+.+| .++.||.||+|+|.+...+++.+ |++
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~ 220 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIP 220 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETSC
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCCC
Confidence 35778888889999999999994 988864 2 3566677 47999999999999877777666 553
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-09 Score=95.77 Aligned_cols=121 Identities=16% Similarity=0.060 Sum_probs=69.6
Q ss_pred CCcEEEECCchhHHHHHHhhhcc-CceEEEEcCCCccccchhhhhhh----------------ccccccc--------cc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHMVFTPLLASTC----------------VGTLEFR--------SV 116 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~-g~~v~vie~~~~~~~~~~~~~~~----------------~~~~~~~--------~~ 116 (351)
.+||+|||||++|+++|..|++. |.+|+|||+.+......+..+.. .+.+... ..
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 118 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA 118 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCH
Confidence 47999999999999999999997 99999999987542111000000 0110000 00
Q ss_pred ccchhccchhhhcCCCeEEEE-EEeeeEeCCCCEE-EEEee------c--CccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 117 AEPIARIQPAISREPGSYFFL-SHCAGIDTDNHVV-HCETV------T--DELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~v-~~~~~------~--~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
......+...+....++.++. .+|+.+..+...+ .+... . ++. ..+...+.+|.||+|+|..+...
T Consensus 119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~---~g~~~~i~ad~VV~AtG~~s~~~ 194 (284)
T 1rp0_A 119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQS---CMDPNVMEAKIVVSSCGHDGPFG 194 (284)
T ss_dssp HHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSS---CCCCEEEEEEEEEECCCSSSTTT
T ss_pred HHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccc---cCceEEEECCEEEECCCCchHHH
Confidence 011112222333446777765 5888887665543 12111 1 110 00123799999999999876543
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.5e-09 Score=97.05 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCccccccCCC
Q 018704 283 DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
+..+.+.+.+.+++.|++++.+. |+++.. + .|.+.+| ++.+|.||+|+|.....++..+++
T Consensus 163 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~ 228 (382)
T 1ryi_A 163 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGL 228 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhcCC
Confidence 35778888888999999999994 888864 2 3556666 799999999999876666665554
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-08 Score=101.03 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCc-EEeccEEEEecCCCCccccccCCCCC
Q 018704 283 DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGT-EVPYGLLVWSTGVGPSTLVKSLDLPK 346 (351)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~-~~~~D~vi~a~G~~p~~~~~~~gl~~ 346 (351)
+..+...+.+.+++.|++++.++ |+++.. + .|.+.+|. ++.+|.||+|+|.....++..+++++
T Consensus 411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~~l~~~~~lpl 480 (689)
T 3pvc_A 411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLPEWEQTHHLPL 480 (689)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTTCSTTTTTSCC
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchhccccccCCcc
Confidence 35777888888899999999995 988864 3 35666776 89999999999988666655555443
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=8.7e-09 Score=95.33 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=53.4
Q ss_pred ccEEEEEeCCC-CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecCCcEEeccEEEEecCCCCccccc
Q 018704 267 YIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVK 340 (351)
Q Consensus 267 ~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~g~~~~~D~vi~a~G~~p~~~~~ 340 (351)
.....++.+.. .+. +..+...+.+.+++.|++++.++ |++++. ++ +.+.+| ++.+|.||+|+|.+.+.++.
T Consensus 134 ~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~ 210 (389)
T 2gf3_A 134 ENYNAIFEPNSGVLF--SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLS 210 (389)
T ss_dssp TTEEEEEETTCEEEE--HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGG
T ss_pred CCceEEEeCCCcEEe--HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHHHHhh
Confidence 45667766642 221 35777888888999999999994 988864 33 444454 79999999999988776666
Q ss_pred cCC
Q 018704 341 SLD 343 (351)
Q Consensus 341 ~~g 343 (351)
.++
T Consensus 211 ~~g 213 (389)
T 2gf3_A 211 KLN 213 (389)
T ss_dssp GGT
T ss_pred hhc
Confidence 554
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=6e-10 Score=102.78 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCccccccCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
..+...+.+.+++.|++++.++ |+++.. + .|.+.+| ++.||.||+|+|.+...++..+|+
T Consensus 154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~ 218 (381)
T 3nyc_A 154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAGV 218 (381)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHhCC
Confidence 5677888888999999999984 887753 3 3555666 799999999999876655554443
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-10 Score=114.08 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=34.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
..+||+|||||++|+++|+.|++.|++|+|||+.+...
T Consensus 45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g 82 (623)
T 3pl8_A 45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS 82 (623)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence 35799999999999999999999999999999977643
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.6e-08 Score=91.03 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce---EEecCCcEEeccEEEEecCCCCccccccCC
Q 018704 283 DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (351)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~---v~~~~g~~~~~D~vi~a~G~~p~~~~~~~g 343 (351)
+..+.+.+.+.+++.|++++.+. |+++.. ++ |.+.+| ++.+|.||+|+|.....+...+|
T Consensus 148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g 213 (382)
T 1y56_B 148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAG 213 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcC
Confidence 35677778888899999999994 988863 32 666666 79999999999988755444433
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=3.8e-09 Score=99.94 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=33.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+.+||+|||||++||++|+.|++.|.+|+|||+.+.
T Consensus 24 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~ 60 (447)
T 2i0z_A 24 AMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK 60 (447)
T ss_dssp -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred cCCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4558999999999999999999999999999998764
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-08 Score=99.95 Aligned_cols=62 Identities=13% Similarity=0.224 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCCCccccccCCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~ 345 (351)
..+...+.+.+++.|++++.++ |+++.. + .|.+.+|.++.+|.||+|+|.....+...++++
T Consensus 417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~~l~~~~~lp 483 (676)
T 3ps9_A 417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQISRFSQTSTLP 483 (676)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGGCSTTTTTCS
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchhccccccCCc
Confidence 5777888888899999999995 888853 3 345567788999999999998866555544444
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.6e-08 Score=92.62 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEEEEecCCCCccccccCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
..+.+.+.+.+++.|++++.+. |+++.. + +|.+.+| ++.+|.||+|+|.....+.+.+|+
T Consensus 174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g~ 239 (405)
T 2gag_B 174 DHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAGF 239 (405)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcCC
Confidence 4677888888999999999984 888863 2 3666677 799999999999877555444443
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-09 Score=103.52 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=70.8
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc------hhhhhh--hccc------ccccc---c-ccchh
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT------PLLAST--CVGT------LEFRS---V-AEPIA 121 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~------~~~~~~--~~~~------~~~~~---~-~~~~~ 121 (351)
...+||+|||||++||++|..|++.|++|+|||+.+..... +..... ..+. ..... + ...+.
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~ 169 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQ 169 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHH
T ss_pred cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHH
Confidence 35689999999999999999999999999999988654211 100000 0000 00000 0 01111
Q ss_pred ccchhhhcCCCeEEEE-EEeeeEeCC---CCEEEEEee-c-CccccCCCceeEeeccEEEEecCCCcCCCCCCC
Q 018704 122 RIQPAISREPGSYFFL-SHCAGIDTD---NHVVHCETV-T-DELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (351)
Q Consensus 122 ~~~~~~~~~~~~~~~~-~~v~~i~~~---~~~v~~~~~-~-~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g 189 (351)
..........++.++. .+|+.+..+ ...+.+... . +|+ ..++.+|.||+|+|..+......+
T Consensus 170 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~------~~~i~ad~VV~A~G~~S~~r~~~~ 237 (497)
T 2bry_A 170 LLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQ------LASYEFDVLISAAGGKFVPEGFTI 237 (497)
T ss_dssp HHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHH------HHTCCBSEEEECCCTTCCCTTCEE
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCC------EEEEEcCEEEECCCCCcccccccc
Confidence 1211222234666554 588888763 233433321 1 341 126899999999999866554433
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.2e-10 Score=106.61 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=30.1
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
||+|||||++||++|+.|++.|.+|+|||+.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~ 31 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR 31 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 7999999999999999999999999999987
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.9e-09 Score=96.95 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=33.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+||+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~ 46 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 46 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 479999999999999999999999999999987654
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-08 Score=94.93 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhhcCcEEEcC----eEEEEeC--C---eEEecCCcEEeccEEEEecCCCCccccc
Q 018704 284 DRLRHYATTQLSKSGVRLVRG----IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVK 340 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~----~v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 340 (351)
..+...+.+.+++.|++++.+ +|+++.. + +|++.+|+++.||.||+|+|.....++.
T Consensus 161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l~~ 226 (438)
T 3dje_A 161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQFLD 226 (438)
T ss_dssp HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGGGTSC
T ss_pred HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChhhhcC
Confidence 567788888899999999998 5888753 3 3777888889999999999987665544
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.1e-09 Score=103.09 Aligned_cols=146 Identities=19% Similarity=0.205 Sum_probs=97.1
Q ss_pred eccEEEEecCCCcCCCCCCCcc-ccccccCCHHHHHHH-HHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHH
Q 018704 170 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEI-RRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSG 247 (351)
Q Consensus 170 ~~d~lviAtG~~p~~p~i~g~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~ 247 (351)
.||.+++++|..|+.+++++.+ +..+......+.... ..++. . .|. .........+|+|||||.+|+.+|.
T Consensus 37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~-~~~~~~~~~dVvIVGgG~aGl~aA~ 109 (497)
T 2bry_A 37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRAS----Q--PVY-QQGQACTNTKCLVVGAGPCGLRAAV 109 (497)
T ss_dssp HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHT----S--GGG-GGGTTTTTCEEEEECCSHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhc----c--ccc-cCccccCCCCEEEECccHHHHHHHH
Confidence 4678999999998777665543 233344444443333 11111 0 000 0001123459999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC------Cc----------------------------HHHHHHHHHH
Q 018704 248 ELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FD----------------------------DRLRHYATTQ 293 (351)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~------~~----------------------------~~~~~~~~~~ 293 (351)
.|++.| .+|+++++...+.. .+ ..+.+.+.+.
T Consensus 110 ~La~~G--------------~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 175 (497)
T 2bry_A 110 ELALLG--------------ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKV 175 (497)
T ss_dssp HHHHTT--------------CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHH
T ss_pred HHHHCC--------------CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHH
Confidence 999877 89999998642210 01 3555667777
Q ss_pred hhhcCcEEEcCe-EEEEeCC-------eEEe--c-CC--cEEeccEEEEecCCCCc
Q 018704 294 LSKSGVRLVRGI-VKDVDSQ-------KLIL--N-DG--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 294 l~~~gV~~~~~~-v~~v~~~-------~v~~--~-~g--~~~~~D~vi~a~G~~p~ 336 (351)
+++.||+++.+. |+++..+ .|.+ . +| .++.+|.||.|+|..+.
T Consensus 176 ~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~ 231 (497)
T 2bry_A 176 ALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV 231 (497)
T ss_dssp HHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred HHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence 888899999994 9888641 4556 3 56 46899999999998876
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.7e-08 Score=85.47 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=71.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC-----------------CC-------CcHHH
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-----------------SS-------FDDRL 286 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l-----------------~~-------~~~~~ 286 (351)
+|+|||||++|+++|..|++.+ .+|+++++.. .. .. ....+
T Consensus 5 dVvVVGgG~aGl~aA~~la~~g--------------~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 70 (232)
T 2cul_A 5 QVLIVGAGFSGAETAFWLAQKG--------------VRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAF 70 (232)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHH
Confidence 7999999999999999999877 8999999861 00 00 11256
Q ss_pred HHHHHHHhhhc-CcEEEcCeEEEEeC--C---eEEecCCcEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSKS-GVRLVRGIVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~~-gV~~~~~~v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+++. |++++..+|+++.. + .+.+.+|.++++|.||+|+|..++
T Consensus 71 ~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~ 126 (232)
T 2cul_A 71 HARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG 126 (232)
T ss_dssp HHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred HHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence 67778888886 99999656888753 3 467788888999999999999665
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-08 Score=93.50 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhcCcEEEcC-eEEEEeC--C--eEEecCCcEEeccEEEEecCCCCccccc
Q 018704 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVK 340 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 340 (351)
..+...+.+.+++.|++++.+ +|+++.. + .+.+.+| ++.+|.||+|+|.+...++.
T Consensus 149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~ 209 (372)
T 2uzz_A 149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVKDLLP 209 (372)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGGGTST
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHHhhcc
Confidence 467778888888999999999 4988864 3 3555666 59999999999987655544
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=95.50 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=33.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+++||+|||||++||++|+.|++.|++|+|||+.+..
T Consensus 21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~ 58 (407)
T 3rp8_A 21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI 58 (407)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 45689999999999999999999999999999987643
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-09 Score=98.44 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=33.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
++||+|||||||||++|+.|++.|++|+|||+++..
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~ 39 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEI 39 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 489999999999999999999999999999987653
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.9e-09 Score=100.54 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=32.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+.+||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~ 56 (591)
T 3i3l_A 22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA 56 (591)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence 35899999999999999999999999999999874
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-08 Score=93.54 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=33.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||+|||||++||++|..|++.|++|+|||+.+.
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 60 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 357999999999999999999999999999998764
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.8e-09 Score=92.04 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=33.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..||+|||||||||+||+.|++.|++|+|||+.+..
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~ 37 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS 37 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 479999999999999999999999999999998754
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=94.54 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=33.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
++||+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~ 41 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE 41 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 479999999999999999999999999999987543
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-08 Score=92.83 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=33.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++||+|||||++||++|..|++.|++|+|||+.+.
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 39 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 357999999999999999999999999999998765
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-08 Score=92.65 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=31.8
Q ss_pred CcEEEECCchhHHHHHHhhhc---cCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~~ 96 (351)
+||+|||||++||++|+.|++ .|++|+|||+...
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~ 38 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD 38 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence 589999999999999999999 9999999998754
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.71 E-value=8.8e-09 Score=96.43 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=32.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+||+|||||++|+++|+.|++.|++|+|+|+.+
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4799999999999999999999999999999875
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-08 Score=94.23 Aligned_cols=94 Identities=22% Similarity=0.408 Sum_probs=71.2
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC---CCCCc---------HHHHHHHHHHhhhcC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---LSSFD---------DRLRHYATTQLSKSG 298 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---l~~~~---------~~~~~~~~~~l~~~g 298 (351)
|+|+|||||+.|+.+|..|.+.+ ++.+|+++++++. .|.+. .++...+.+.+++.|
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~------------~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~g 70 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLM------------PDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFN 70 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHC------------TTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGT
T ss_pred CcEEEECCCHHHHHHHHHHhccC------------cCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCC
Confidence 58999999999999999997754 2379999999752 12111 111111234466779
Q ss_pred cEEEcCeEEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 299 VRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 299 V~~~~~~v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
|+++.++|++++. ..|++++|+++++|.+|+|||.++.
T Consensus 71 v~~i~~~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 71 IEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp EEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEE
T ss_pred cEEEEeEEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc
Confidence 9999999999975 5899999999999999999997654
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-07 Score=94.56 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEEEEecCCCCccccccCCC
Q 018704 283 DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
+..+...+.+.+++.|++++.++ |+++.. + +|.+.+| ++.||.||+|+|.+...+.+.+|+
T Consensus 150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g~ 216 (830)
T 1pj5_A 150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGM 216 (830)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHHHHHHhCC
Confidence 35777888889999999999994 888863 3 3556666 799999999999887655554443
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.7e-08 Score=90.97 Aligned_cols=95 Identities=25% Similarity=0.307 Sum_probs=71.1
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--CCCCcHHHH---------HHHHHHhhhcC
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--LSSFDDRLR---------HYATTQLSKSG 298 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--l~~~~~~~~---------~~~~~~l~~~g 298 (351)
+|||+|||||+.|+.+|..|.+.+ .+.+|+++++++. .......+. ..-.+.+...|
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~------------~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~g 69 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLAD------------PSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHG 69 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHC------------TTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTT
T ss_pred cCEEEEECCcHHHHHHHHHHHhcC------------cCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCC
Confidence 479999999999999999987654 2379999998742 111111110 00113455679
Q ss_pred cEEEcCeEEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 299 VRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 299 V~~~~~~v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
|+++.++|++++. ..+.+.+|+++++|.+|+|+|.+++
T Consensus 70 v~~i~~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~ 109 (401)
T 3vrd_B 70 IQVVHDSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLL 109 (401)
T ss_dssp CEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred CEEEEeEEEEEEccCcEEEecccceeecceeeeccCCccc
Confidence 9999999999976 4788999999999999999998876
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-08 Score=96.41 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=31.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+.+||+|||||++||++|..|++.|++|+|||+.+.
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~ 83 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE 83 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 458999999999999999999999999999998754
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-07 Score=83.89 Aligned_cols=91 Identities=20% Similarity=0.319 Sum_probs=72.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC----------CCC----CcHHHHHHHHHHhhhc
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----------LSS----FDDRLRHYATTQLSKS 297 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------l~~----~~~~~~~~~~~~l~~~ 297 (351)
+|+|||||+.|+.+|..|.+.+ .+|+++++... .+. ...++...+.+.+++.
T Consensus 4 ~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (297)
T 3fbs_A 4 DVIIIGGSYAGLSAALQLGRAR--------------KNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERY 69 (297)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTC
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999876 89999997421 111 1246667777777776
Q ss_pred -CcEEEcCeEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 298 -GVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 -gV~~~~~~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+++++.++|++++.+ .+.+.+|+++.+|.||+|+|..|.
T Consensus 70 ~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~ 113 (297)
T 3fbs_A 70 PTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDE 113 (297)
T ss_dssp TTEEEEESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEE
T ss_pred CCeEEEEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCC
Confidence 899988888888653 677788889999999999999876
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.7e-08 Score=94.01 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=33.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||+|||||++||++|+.|++.|++|+|||+.+.
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~ 39 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPG 39 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 457999999999999999999999999999998754
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=7.6e-08 Score=93.86 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=33.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||||||||++||++|+.|++.|.+|+|||+.+..
T Consensus 125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 161 (571)
T 1y0p_A 125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI 161 (571)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3589999999999999999999999999999987654
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.2e-08 Score=91.32 Aligned_cols=95 Identities=26% Similarity=0.438 Sum_probs=73.4
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---CCC---------cHHHHHHHHHHhhhcC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSF---------DDRLRHYATTQLSKSG 298 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---~~~---------~~~~~~~~~~~l~~~g 298 (351)
++|+|||||..|+.+|..|.+.. ..+.+|+++++++.. +.+ ..++...+.+.+++.|
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~-----------~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 73 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEAL-----------GSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKG 73 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHH-----------GGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTT
T ss_pred CcEEEECCcHHHHHHHHHHhccC-----------CCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCC
Confidence 58999999999999999998722 123899999997522 111 1222233455677789
Q ss_pred cEEEcCeEEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 299 VRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 299 V~~~~~~v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
|+++.++|++++. ..|.+.+|+++.+|.||+|+|.+|+
T Consensus 74 v~~~~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~ 113 (437)
T 3sx6_A 74 IHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLA 113 (437)
T ss_dssp CEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCCEEC
T ss_pred CEEEEeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcC
Confidence 9999888999876 4788999989999999999999887
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.4e-08 Score=93.65 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecC---C--cEEeccEEEEecCCCCccccccCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILND---G--TEVPYGLLVWSTGVGPSTLVKSLDL 344 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~---g--~~~~~D~vi~a~G~~p~~~~~~~gl 344 (351)
..+...+.+.+++.|++++.+. |+++.. + +|.+.+ | .++.||.||.|+|.+...+.+.+|.
T Consensus 170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~ 241 (561)
T 3da1_A 170 ARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRS 241 (561)
T ss_dssp HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCC
Confidence 5677778888889999999994 888753 3 355543 3 4689999999999877655555554
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.61 E-value=7.4e-08 Score=89.36 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=32.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++||+|||||++||++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 36 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 47999999999999999999999999999998764
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=4.8e-08 Score=92.49 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=32.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~ 40 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW 40 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47999999999999999999999999999998765
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-07 Score=83.89 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=33.0
Q ss_pred CCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~ 97 (351)
.+||+|||||++||++|+.|++. |++|+|||+....
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~ 116 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP 116 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Confidence 58999999999999999999997 9999999987654
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-07 Score=85.88 Aligned_cols=91 Identities=18% Similarity=0.395 Sum_probs=70.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHH-------------HHHHhhhcC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHY-------------ATTQLSKSG 298 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~-------------~~~~l~~~g 298 (351)
+|+|||||..|+.+|..|... +.+|+++++.+.++-..+.+... ..+.+++.|
T Consensus 11 ~~vIvGgG~AGl~aA~~L~~~--------------~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~ 76 (385)
T 3klj_A 11 KILILGAGPAGFSAAKAALGK--------------CDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNN 76 (385)
T ss_dssp SEEEECCSHHHHHHHHHHTTT--------------CSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTT
T ss_pred CEEEEcCcHHHHHHHHHHhCC--------------CCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCC
Confidence 899999999999999999433 38999999975433211222221 234456789
Q ss_pred cEEEcC-eEEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 299 VRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 299 V~~~~~-~v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
|+++.+ +|++++. ..|.+.+|+++.+|.||+|||.+|.
T Consensus 77 i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~ 117 (385)
T 3klj_A 77 IKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIAN 117 (385)
T ss_dssp CEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred CEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcC
Confidence 999999 5999875 5789999999999999999998877
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-07 Score=92.32 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=34.2
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
...+||||||||++||++|+.|++.|.+|+|||+.+..
T Consensus 119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~ 156 (566)
T 1qo8_A 119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS 156 (566)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 34579999999999999999999999999999987643
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.3e-07 Score=89.21 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=33.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||||||||++||+||+.|++.|.+|+|||+.+..
T Consensus 40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~ 76 (510)
T 4at0_A 40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGW 76 (510)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4589999999999999999999999999999987654
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-07 Score=87.94 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=32.3
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+|+||||||+||++|..|++.|++|+|||+.+..
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~ 36 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA 36 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 58999999999999999999999999999987543
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.55 E-value=3e-07 Score=82.87 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=73.4
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------------CCCC-----cHHHHHHHHHH
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQ 293 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------l~~~-----~~~~~~~~~~~ 293 (351)
.+|+|||||+.|+.+|..|.+.+ .+|+++++... .+.+ ...+.+.+.+.
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 74 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQ--------------LSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQ 74 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHcC--------------CcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHH
Confidence 48999999999999999998876 88999998621 1222 24566777778
Q ss_pred hhhcCcEEEcCeEEEEeCC-------eEEecCCcEEeccEEEEecCCCCc
Q 018704 294 LSKSGVRLVRGIVKDVDSQ-------KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 294 l~~~gV~~~~~~v~~v~~~-------~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+++.|++++.++|.+++.+ .+.+.+|+++.+|.||+|+|.+|.
T Consensus 75 ~~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~ 124 (325)
T 2q7v_A 75 AEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPR 124 (325)
T ss_dssp HHHTTCEEEECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEEC
T ss_pred HHHcCCEEEeeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcC
Confidence 8888999998878877532 466778889999999999998776
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.8e-07 Score=82.58 Aligned_cols=92 Identities=13% Similarity=0.247 Sum_probs=74.4
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC---CC--------CCCC----cHHHHHHHHHHhh
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------LSSF----DDRLRHYATTQLS 295 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~--------l~~~----~~~~~~~~~~~l~ 295 (351)
.+|+|||||..|+.+|..|.+.+ .+|+++++. .+ .+.+ ..++.+.+.+.++
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYM--------------LKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIE 81 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHH
T ss_pred cCEEEECccHHHHHHHHHHHHCC--------------CcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999876 889999985 11 1222 2467777788888
Q ss_pred hcCcEEEcCeEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.|++++..+|.+++.+ .+.+.+|.++.+|.||+|+|..|.
T Consensus 82 ~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~ 126 (323)
T 3f8d_A 82 KYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRR 126 (323)
T ss_dssp TTTCCEEESCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEEC
T ss_pred HcCCEEEEEEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCc
Confidence 88999999768888654 467778889999999999999876
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-07 Score=89.05 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=33.8
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+.+||+||||||+||++|..|++.|++|+|||+.+..
T Consensus 9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~ 46 (500)
T 2qa1_A 9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVER 46 (500)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 35589999999999999999999999999999987543
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-07 Score=83.92 Aligned_cols=94 Identities=21% Similarity=0.277 Sum_probs=74.6
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC----C-------------CCCC-----cHHH
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE----I-------------LSSF-----DDRL 286 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~-------------l~~~-----~~~~ 286 (351)
..++|+|||||..|+.+|..|.+.+ .+|+++++.. . .+.+ ..++
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 86 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAE--------------IKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSEL 86 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHH
Confidence 3469999999999999999999876 8899999832 0 1122 2477
Q ss_pred HHHHHHHhhhcCcEEEcCeEEEEeC--CeEEe-----cCCcEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSKSGVRLVRGIVKDVDS--QKLIL-----NDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~~gV~~~~~~v~~v~~--~~v~~-----~~g~~~~~D~vi~a~G~~p~ 336 (351)
...+.+.+++.|++++.++|.+++. +.+.+ .++.++.+|.||+|+|.+|.
T Consensus 87 ~~~~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~ 143 (338)
T 3itj_A 87 MDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAK 143 (338)
T ss_dssp HHHHHHHHHHTTCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEEC
T ss_pred HHHHHHHHHHcCCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcC
Confidence 7888888999999999998888865 34444 46778999999999998776
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=88.76 Aligned_cols=95 Identities=16% Similarity=0.270 Sum_probs=72.1
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC---CCC---------CcHHHHHHHHHHhhhcC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---LSS---------FDDRLRHYATTQLSKSG 298 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---l~~---------~~~~~~~~~~~~l~~~g 298 (351)
++|+|||||.+|+.+|..|.+.. ..+.+|+++++++. .+. ...++...+.+.+++.|
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~-----------~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 70 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLV-----------GSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKG 70 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHH-----------GGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGT
T ss_pred CeEEEECCCHHHHHHHHHHHhhC-----------CCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCC
Confidence 48999999999999999998711 01289999998641 111 11233344566777889
Q ss_pred cEEEcCeEEEEeCC--eEEecCCcE----EeccEEEEecCCCCc
Q 018704 299 VRLVRGIVKDVDSQ--KLILNDGTE----VPYGLLVWSTGVGPS 336 (351)
Q Consensus 299 V~~~~~~v~~v~~~--~v~~~~g~~----~~~D~vi~a~G~~p~ 336 (351)
++++.++|++++.+ .|.+.+|.. +++|.||+|+|.+|+
T Consensus 71 v~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~ 114 (409)
T 3h8l_A 71 IQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLA 114 (409)
T ss_dssp CEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEEC
T ss_pred eEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcC
Confidence 99999999888764 788877764 999999999999887
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.5e-07 Score=88.60 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=33.7
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+..+||+||||||+||++|..|++.|++|+|||+.+..
T Consensus 10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~ 47 (499)
T 2qa2_A 10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQR 47 (499)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 35689999999999999999999999999999987543
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-06 Score=84.36 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=34.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||+|||||++||++|..|++.|++|+|+|+.+..
T Consensus 125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~ 161 (572)
T 1d4d_A 125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP 161 (572)
T ss_dssp EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3579999999999999999999999999999998764
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-07 Score=91.41 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
++||+|||||++||++|+.|++.|++|+|||+.+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~ 40 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA 40 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence 4799999999999999999999999999999876
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3e-07 Score=86.87 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=70.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (351)
..++|+|||||++|+.+|..|++.|.+|+|+|+.+..... .+...+...........++.++. ..
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------------~~~~~~~~~l~~~l~~~gv~i~~~~~ 213 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV--------------YLDKEFTDVLTEEMEANNITIATGET 213 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--------------TCCHHHHHHHHHHHHTTTEEEEESCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc--------------cCCHHHHHHHHHHHHhCCCEEEcCCE
Confidence 3579999999999999999999999999999997753210 01112222223334456788776 47
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
|+.++.+.+...+.. ++. .+.+|.||+|+|..|+.+
T Consensus 214 v~~i~~~~~v~~v~~--~~~--------~i~~d~vi~a~G~~p~~~ 249 (447)
T 1nhp_A 214 VERYEGDGRVQKVVT--DKN--------AYDADLVVVAVGVRPNTA 249 (447)
T ss_dssp EEEEECSSBCCEEEE--SSC--------EEECSEEEECSCEEESCG
T ss_pred EEEEEccCcEEEEEE--CCC--------EEECCEEEECcCCCCChH
Confidence 888887643322322 344 799999999999988765
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.8e-07 Score=80.28 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=72.0
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEE-EeCCCC------------CCCCc-----HHHHHHHHH
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTL-IEANEI------------LSSFD-----DRLRHYATT 292 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~------------l~~~~-----~~~~~~~~~ 292 (351)
++|+|||||+.|+.+|..|.+.+ .+|++ +++..+ .+.++ .++...+.+
T Consensus 5 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (315)
T 3r9u_A 5 LDVAIIGGGPAGLSAGLYATRGG--------------LKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSE 70 (315)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHT--------------CSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--------------CCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHH
Confidence 48999999999999999999876 78999 887421 12222 567788888
Q ss_pred HhhhcCcEEEcCeEEEE-eC--CeEE--ecCCcEEeccEEEEecCCCCc
Q 018704 293 QLSKSGVRLVRGIVKDV-DS--QKLI--LNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 293 ~l~~~gV~~~~~~v~~v-~~--~~v~--~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+++.+++++.++|.++ +. +.+. +..+.++.+|.||+|+|..|.
T Consensus 71 ~~~~~~v~~~~~~v~~i~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~ 119 (315)
T 3r9u_A 71 QCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPK 119 (315)
T ss_dssp HHTTTCCEEECCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred HHHHcCcEEEEEEEEEEecCCCCcEEEEEecCCEEEeCEEEEeeCCCCC
Confidence 88999999999988887 44 3444 543338999999999998776
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.5e-07 Score=87.79 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=32.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCce-EEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~~ 96 (351)
.+||+|||||++||++|..|++.|++ |+|||+.+.
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 39 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 39 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 47999999999999999999999999 999998765
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.7e-07 Score=82.24 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=70.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----------------------CCCc------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----------------------SSFD------ 283 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l----------------------~~~~------ 283 (351)
+|+|||||..|+.+|..|.+.+ .+|+++++.+.+ +.++
T Consensus 5 ~vvIIG~G~aGl~~A~~l~~~g--------------~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 4a9w_A 5 DVVVIGGGQSGLSAGYFLRRSG--------------LSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQG 70 (357)
T ss_dssp EEEEECCSHHHHHHHHHHHHSS--------------CCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCcc
Confidence 8999999999999999999876 889999986321 1110
Q ss_pred -----HHHHHHHHHHhhhcCcEEEcC-eEEEEeC--Ce---EEecCCcEEeccEEEEecCCC
Q 018704 284 -----DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 284 -----~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~---v~~~~g~~~~~D~vi~a~G~~ 334 (351)
..+.+.+.+.+++.|++++.+ +|++++. +. |.+.+| ++++|.||+|+|..
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~ 131 (357)
T 4a9w_A 71 PYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTW 131 (357)
T ss_dssp SSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred CCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCC
Confidence 467778888888899999999 4888764 34 666666 89999999999964
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-07 Score=88.43 Aligned_cols=101 Identities=16% Similarity=0.232 Sum_probs=70.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+. +. ....+.+.........++.++. .+|
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l--~~-------------~~~~~~~~l~~~l~~~Gv~i~~~~~V 231 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL--PT-------------MDLEVSRAAERVFKKQGLTIRTGVRV 231 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC--TT-------------SCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc--cc-------------cCHHHHHHHHHHHHHCCCEEEECCEE
Confidence 4789999999999999999999999999999987632 00 0011111111122234666665 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.++.+.+.+.+.. .++. .+.+|.||+|+|..|+.+.
T Consensus 232 ~~i~~~~~~v~v~~-~~g~--------~i~~D~vv~A~G~~p~~~~ 268 (455)
T 2yqu_A 232 TAVVPEAKGARVEL-EGGE--------VLEADRVLVAVGRRPYTEG 268 (455)
T ss_dssp EEEEEETTEEEEEE-TTSC--------EEEESEEEECSCEEECCTT
T ss_pred EEEEEeCCEEEEEE-CCCe--------EEEcCEEEECcCCCcCCCC
Confidence 88887666665543 3455 8999999999999887654
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.4e-07 Score=80.02 Aligned_cols=91 Identities=19% Similarity=0.272 Sum_probs=72.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCCC------------CCCC-----cHHHHHHHHHH
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEI------------LSSF-----DDRLRHYATTQ 293 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~------------l~~~-----~~~~~~~~~~~ 293 (351)
+|+|||||+.|+.+|..|.+.+ . +|++++++.. .+.+ ...+.+.+.+.
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g--------------~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 68 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGG--------------VKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQ 68 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHH
T ss_pred eEEEECccHHHHHHHHHHHHCC--------------CCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHH
Confidence 7999999999999999998866 7 8999998521 1222 14566777778
Q ss_pred hhhcCcEEEcCeEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 294 LSKSGVRLVRGIVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 294 l~~~gV~~~~~~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+++.|++++.++|.+++. + .+.+.+|+++.+|.||+|+|.+|.
T Consensus 69 ~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~ 115 (311)
T 2q0l_A 69 CFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPK 115 (311)
T ss_dssp HHTTSCEEECSCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred HHHcCCEEEEEEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCC
Confidence 888899999877877753 4 566778888999999999998766
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-06 Score=79.84 Aligned_cols=92 Identities=24% Similarity=0.266 Sum_probs=73.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC-----------------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----------------------------- 281 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~----------------------------- 281 (351)
.+|+|||||.+|+.+|..|.+.| .+|+++++......
T Consensus 12 ~dVvIVGaG~aGl~~A~~L~~~G--------------~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~ 77 (379)
T 3alj_A 12 RRAEVAGGGFAGLTAAIALKQNG--------------WDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSH 77 (379)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCB
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCC
Confidence 48999999999999999999876 89999998642210
Q ss_pred ----------------Cc-----------HHHHHHHHHHhhhcCcEEEcCe-EEEEeCC-eEEecCCcEEeccEEEEecC
Q 018704 282 ----------------FD-----------DRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-KLILNDGTEVPYGLLVWSTG 332 (351)
Q Consensus 282 ----------------~~-----------~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~-~v~~~~g~~~~~D~vi~a~G 332 (351)
++ ..+.+.+.+.+.+.||+++.+. |++++.+ .|++.+|+++++|.||.|+|
T Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~AdG 157 (379)
T 3alj_A 78 TPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADG 157 (379)
T ss_dssp CCSCEEEEETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECCC
T ss_pred CccceEEEeCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECCC
Confidence 00 3345667777888899999995 8888643 67788898999999999999
Q ss_pred CCCc
Q 018704 333 VGPS 336 (351)
Q Consensus 333 ~~p~ 336 (351)
..+.
T Consensus 158 ~~s~ 161 (379)
T 3alj_A 158 VGSK 161 (379)
T ss_dssp TTCH
T ss_pred ccHH
Confidence 8875
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.4e-07 Score=89.93 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+||+||||||+||++|..|++.|++|+|||+.+..
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~ 61 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT 61 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 479999999999999999999999999999987543
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=4.6e-07 Score=81.60 Aligned_cols=91 Identities=23% Similarity=0.291 Sum_probs=72.4
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----------------CCC----cHHHHHHH
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----------------SSF----DDRLRHYA 290 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l----------------~~~----~~~~~~~~ 290 (351)
++|+|||||..|+.+|..|.+.+ .+|+++++.+.+ +.+ ..++...+
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQ--------------ASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNL 73 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--------------CCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHH
Confidence 48999999999999999998866 899999996421 111 25677778
Q ss_pred HHHhhhcCcEEEcC-eEEEEeC--C---eEEecCCcEEeccEEEEecCC---CCc
Q 018704 291 TTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGV---GPS 336 (351)
Q Consensus 291 ~~~l~~~gV~~~~~-~v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~---~p~ 336 (351)
.+.+++.+++++.+ +|.+++. + .+.+.+|+ +.+|.||+|+|. .|.
T Consensus 74 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~ 127 (332)
T 3lzw_A 74 KEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPR 127 (332)
T ss_dssp HHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEEC
T ss_pred HHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCC
Confidence 88888889999998 4888864 2 56677775 999999999999 555
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5e-07 Score=83.57 Aligned_cols=100 Identities=25% Similarity=0.368 Sum_probs=70.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+... . ....+...........++.++.. +|
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------~----~~~~~~~~l~~~l~~~gv~i~~~~~v 210 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG----------L----LHPAAAKAVQAGLEGLGVRFHLGPVL 210 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT----------T----SCHHHHHHHHHHHHTTTCEEEESCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc----------c----cCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 578999999999999999999999999999997753210 0 01112222222233457777654 68
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
..++.+...+.+.. .+++ ++.+|.||+|+|..|+.
T Consensus 211 ~~i~~~~~~~~v~~-~~g~--------~i~~d~vv~a~G~~p~~ 245 (384)
T 2v3a_A 211 ASLKKAGEGLEAHL-SDGE--------VIPCDLVVSAVGLRPRT 245 (384)
T ss_dssp EEEEEETTEEEEEE-TTSC--------EEEESEEEECSCEEECC
T ss_pred EEEEecCCEEEEEE-CCCC--------EEECCEEEECcCCCcCH
Confidence 88876655555543 4565 89999999999988765
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.6e-07 Score=89.08 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=79.0
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-------------------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------------------------- 279 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l------------------------------- 279 (351)
++|+|||||++|+-+|..|++.| .+|+++++....
T Consensus 108 ~DVVIVGgGpaGL~aA~~La~~G--------------~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~ 173 (549)
T 3nlc_A 108 ERPIVIGFGPCGLFAGLVLAQMG--------------FNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGT 173 (549)
T ss_dssp CCCEEECCSHHHHHHHHHHHHTT--------------CCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGT
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEEccCcccccccchhcccccccccccccceeccCCccc
Confidence 48999999999999999999876 889999876210
Q ss_pred ------------CCC------------------------------cHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--
Q 018704 280 ------------SSF------------------------------DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q-- 312 (351)
Q Consensus 280 ------------~~~------------------------------~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~-- 312 (351)
+.+ ...+.+.+.+.+++.|+++++++ |+++.. +
T Consensus 174 ~sdgkl~~~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v 253 (549)
T 3nlc_A 174 FSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQI 253 (549)
T ss_dssp TSCCCCCCCSCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBE
T ss_pred ccCCceEEEeccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEE
Confidence 000 03455667777888999999995 888853 2
Q ss_pred -eEEecCCcEEeccEEEEecCCCCc---cccccCCCCCC
Q 018704 313 -KLILNDGTEVPYGLLVWSTGVGPS---TLVKSLDLPKS 347 (351)
Q Consensus 313 -~v~~~~g~~~~~D~vi~a~G~~p~---~~~~~~gl~~~ 347 (351)
+|.+.+|+++.||.||+|+|..+. .++..+|++..
T Consensus 254 ~gV~l~~G~~i~Ad~VVlA~G~~s~~~~~~l~~~Gi~~~ 292 (549)
T 3nlc_A 254 TGVTLSNGEEIKSRHVVLAVGHSARDTFEMLHERGVYME 292 (549)
T ss_dssp EEEEETTSCEEECSCEEECCCTTCHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCEEECCEEEECCCCChhhHHHHHHHcCCCcc
Confidence 477889999999999999999996 35566666543
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.2e-07 Score=86.30 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=70.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+... ....+.+.........++.++. .+|
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---------------~~~~~~~~l~~~l~~~gV~i~~~~~v 233 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ---------------GDPETAALLRRALEKEGIRVRTKTKA 233 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---------------SCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc---------------cCHHHHHHHHHHHHhcCCEEEcCCEE
Confidence 478999999999999999999999999999997753210 0111222222223334777665 478
Q ss_pred eeEeCCCCEEEEEeecC--ccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTD--ELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~--~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.++.+.+.+.+....+ ++ ..++.+|.||+|+|..|+...
T Consensus 234 ~~i~~~~~~~~v~~~~~~~g~------~~~i~~D~vv~a~G~~p~~~~ 275 (464)
T 2eq6_A 234 VGYEKKKDGLHVRLEPAEGGE------GEEVVVDKVLVAVGRKPRTEG 275 (464)
T ss_dssp EEEEEETTEEEEEEEETTCCS------CEEEEESEEEECSCEEESCTT
T ss_pred EEEEEeCCEEEEEEeecCCCc------eeEEEcCEEEECCCcccCCCC
Confidence 88877665555433213 32 136899999999999887754
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.7e-07 Score=88.33 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCcEEEECCchhHHHHHHhhhc---cCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~ 95 (351)
.+||+|||||++|+++|..|++ .|++|+|||+..
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 4799999999999999999999 999999999864
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=6e-07 Score=84.39 Aligned_cols=94 Identities=26% Similarity=0.390 Sum_probs=70.3
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC----CcH----------HHHHHHHHHhhh
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----FDD----------RLRHYATTQLSK 296 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~----~~~----------~~~~~~~~~l~~ 296 (351)
++|+|||||..|+.+|..|.+.+. ..+|+++++...++- +.. .+.....+.+++
T Consensus 5 ~~vvIIGgG~aGl~aA~~l~~~g~------------~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 72 (431)
T 1q1r_A 5 DNVVIVGTGLAGVEVAFGLRASGW------------EGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAA 72 (431)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC------------CSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHH
T ss_pred CcEEEEcCHHHHHHHHHHHHccCc------------CCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHh
Confidence 489999999999999999988761 138999998643221 111 111111345667
Q ss_pred cCcEEEcCe-EEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 297 SGVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.||+++.+. |..++. ..|.+.+|+++.+|.||+|||.+|.
T Consensus 73 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~ 115 (431)
T 1q1r_A 73 QNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPR 115 (431)
T ss_dssp TTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred CCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCcc
Confidence 899999995 888875 5788888989999999999999887
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-06 Score=81.89 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=70.8
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC----CcHHHHH---------HHHHHhhhc
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----FDDRLRH---------YATTQLSKS 297 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~----~~~~~~~---------~~~~~l~~~ 297 (351)
++|+|||||..|+.+|..|.+.+ ...+|+++++.+..+- +...... ...+.+++.
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g------------~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~ 70 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEG------------FEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEA 70 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT------------CCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHT
T ss_pred CCEEEEcccHHHHHHHHHHHccC------------cCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHC
Confidence 38999999999999999998876 1246999999753321 1111111 112345677
Q ss_pred CcEEEcC-eEEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~-~v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+|+++.+ +|..++. ..|.+.+|+++.+|.+|+|||.+|.
T Consensus 71 ~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~ 112 (410)
T 3ef6_A 71 RIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRAR 112 (410)
T ss_dssp TCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred CCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCccc
Confidence 9999999 6999876 4788899999999999999998876
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-07 Score=87.17 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=31.9
Q ss_pred CCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~ 95 (351)
.+||+|||||++|+++|+.|++. |++|+|||+..
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~ 71 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 47999999999999999999999 99999999864
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.5e-07 Score=83.27 Aligned_cols=89 Identities=18% Similarity=0.265 Sum_probs=69.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----------------------------C--
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----------------------------S-- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~----------------------------~-- 281 (351)
+|+|||||.+|+-+|..|++.| .+|+++++.+... .
T Consensus 29 dViIIGgG~AGl~aA~~La~~G--------------~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~ 94 (417)
T 3v76_A 29 DVVIIGAGAAGMMCAIEAGKRG--------------RRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFC 94 (417)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTT
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHH
Confidence 8999999999999999999877 8899998864210 0
Q ss_pred -----------------------------------CcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcE
Q 018704 282 -----------------------------------FDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTE 321 (351)
Q Consensus 282 -----------------------------------~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~ 321 (351)
....+.+.+.+.+++.||+++.+. |+++.. + .|.+.+| +
T Consensus 95 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~ 173 (417)
T 3v76_A 95 KSALARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-T 173 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-E
T ss_pred HHHHHhcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-E
Confidence 012455667777888899999994 888853 3 4556666 8
Q ss_pred EeccEEEEecCCCC
Q 018704 322 VPYGLLVWSTGVGP 335 (351)
Q Consensus 322 ~~~D~vi~a~G~~p 335 (351)
+.||.||+|+|..+
T Consensus 174 i~ad~VIlAtG~~S 187 (417)
T 3v76_A 174 VDAASLVVASGGKS 187 (417)
T ss_dssp EEESEEEECCCCSS
T ss_pred EEeeEEEECCCCcc
Confidence 99999999999887
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=8.6e-07 Score=79.53 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=32.8
Q ss_pred CCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~ 97 (351)
.+||+|||||++||++|..|++. |++|+|+|+++..
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ 102 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 102 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccc
Confidence 35999999999999999999998 9999999987654
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=78.44 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=71.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC---CC--------CC----CcHHHHHHHHHHhhh
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE---IL--------SS----FDDRLRHYATTQLSK 296 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~l--------~~----~~~~~~~~~~~~l~~ 296 (351)
+|+|||||+.|+.+|..|.+.+ .+|+++++.. +. .. ....+...+.+.+++
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKG--------------IRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDE 68 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999998766 7899987531 10 01 124667777888888
Q ss_pred cCcEEEcC-eEEEEeCC-------eEEecCCcEEeccEEEEecCCCCc
Q 018704 297 SGVRLVRG-IVKDVDSQ-------KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 297 ~gV~~~~~-~v~~v~~~-------~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.|++++.+ +|..++.+ .+.+.+|+++.+|.||+|+|.+|.
T Consensus 69 ~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~ 116 (310)
T 1fl2_A 69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWR 116 (310)
T ss_dssp SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred cCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcC
Confidence 99999999 69988532 466778888999999999998776
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.9e-07 Score=87.29 Aligned_cols=101 Identities=17% Similarity=0.262 Sum_probs=68.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.- . +...+...........++.++. .+|
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--~-------------~~~~~~~~l~~~l~~~gv~i~~~~~v 235 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP--T-------------YDSELTAPVAESLKKLGIALHLGHSV 235 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST--T-------------SCHHHHHHHHHHHHHHTCEEETTCEE
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc--c-------------cCHHHHHHHHHHHHHCCCEEEECCEE
Confidence 47899999999999999999999999999999876320 0 0111111111122334666665 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
+.++. .+ +.+.. .+|+ ...+.+|.||+|+|..|+.+.
T Consensus 236 ~~i~~-~~-v~v~~-~~G~------~~~i~~D~vv~a~G~~p~~~~ 272 (458)
T 1lvl_A 236 EGYEN-GC-LLAND-GKGG------QLRLEADRVLVAVGRRPRTKG 272 (458)
T ss_dssp EEEET-TE-EEEEC-SSSC------CCEECCSCEEECCCEEECCSS
T ss_pred EEEEe-CC-EEEEE-CCCc------eEEEECCEEEECcCCCcCCCC
Confidence 88887 43 55542 3341 127999999999999888764
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.39 E-value=9.1e-07 Score=79.93 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=70.4
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----------------CCC----cHHHHHHH
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----------------SSF----DDRLRHYA 290 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l----------------~~~----~~~~~~~~ 290 (351)
.+|+|||||..|+.+|..|.+.+ .+|+++++.+.. +.+ ..++...+
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 71 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRG--------------LSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGL 71 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHH
Confidence 38999999999999999998765 889999986321 111 24566677
Q ss_pred HHHhhhcCcEEEcC-eEEEEeCC----eEEecCCcEEeccEEEEecCCC
Q 018704 291 TTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 291 ~~~l~~~gV~~~~~-~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
.+.+++.+++++.+ +|.+++.+ .+.+.+|.++.+|.||+|+|..
T Consensus 72 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 72 VEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVG 120 (335)
T ss_dssp HHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTS
T ss_pred HHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCC
Confidence 77888889999988 48887642 3666778889999999999984
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-07 Score=91.28 Aligned_cols=49 Identities=24% Similarity=0.311 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeEEecCCcEEeccEEEEecC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTG 332 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v~~~~g~~~~~D~vi~a~G 332 (351)
..+.+.+.+.+.+.|++++++. |+++.. ..+++.+|+++.||.||.++.
T Consensus 222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~v~~~~G~~~~ad~vI~t~P 273 (513)
T 4gde_A 222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANNKTVTLQDGTTIGYKKLVSTMA 273 (513)
T ss_dssp HHHHHHHHHTSCGGGEEESGGGCEEEEETTTTEEEETTSCEEEEEEEEECSC
T ss_pred HHHHHHHHHHHHhcCeeeecceEEEEEEccCCEEEEcCCCEEECCEEEECCC
Confidence 3577778888899999999995 999865 578999999999999999875
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.38 E-value=9.3e-07 Score=82.63 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=70.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+..... .....+...........++.++. ..|
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~--------------~~~~~~~~~l~~~l~~~GV~i~~~~~v 217 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLAR--------------VAGEALSEFYQAEHRAHGVDLRTGAAM 217 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--------------TSCHHHHHHHHHHHHHTTCEEEETCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhh--------------hcCHHHHHHHHHHHHhCCCEEEECCEE
Confidence 578999999999999999999999999999997764210 01112222222233445777765 578
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
..+..+...+..-.+.+++ .+.+|.||+|+|..|+.
T Consensus 218 ~~i~~~~~~v~~v~l~dG~--------~i~aD~Vv~a~G~~p~~ 253 (415)
T 3lxd_A 218 DCIEGDGTKVTGVRMQDGS--------VIPADIVIVGIGIVPCV 253 (415)
T ss_dssp EEEEESSSBEEEEEESSSC--------EEECSEEEECSCCEESC
T ss_pred EEEEecCCcEEEEEeCCCC--------EEEcCEEEECCCCccCh
Confidence 8887765443222335666 89999999999998775
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.5e-06 Score=77.94 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=71.6
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----------------CCC----cHHHHHHH
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----------------SSF----DDRLRHYA 290 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l----------------~~~----~~~~~~~~ 290 (351)
.+|+|||||+.|+.+|..|.+.+ .+|+++++.+.+ +.+ ...+.+.+
T Consensus 15 ~dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (360)
T 3ab1_A 15 RDLTIIGGGPTGIFAAFQCGMNN--------------ISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESL 80 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHH
Confidence 48999999999999999998766 899999986321 111 15666777
Q ss_pred HHHhhhcCcEEEcC-eEEEEeC--C---eEEecCCcEEeccEEEEecCCC
Q 018704 291 TTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 291 ~~~l~~~gV~~~~~-~v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
.+.+++.+++++.+ +|.+++. + .|.+.+|+++.+|.||+|+|..
T Consensus 81 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~ 130 (360)
T 3ab1_A 81 WAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLG 130 (360)
T ss_dssp HHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTC
T ss_pred HHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCC
Confidence 78888889999998 4888864 2 4777788889999999999984
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=83.05 Aligned_cols=104 Identities=15% Similarity=0.182 Sum_probs=69.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.- . +...+...........++.++. .+|
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----~----------~~~~~~~~l~~~l~~~gv~i~~~~~v 234 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-----G----------FEKQMAAIIKKRLKKKGVEVVTNALA 234 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-----T----------SCHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-----c----------cCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 47999999999999999999999999999999775320 0 1111212222223334777665 578
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..++.+...+.+....+++ ...+.+|.||+|+|..|+...
T Consensus 235 ~~i~~~~~~~~v~~~~~g~------~~~~~~D~vv~a~G~~p~~~~ 274 (455)
T 1ebd_A 235 KGAEEREDGVTVTYEANGE------TKTIDADYVLVTVGRRPNTDE 274 (455)
T ss_dssp EEEEEETTEEEEEEEETTE------EEEEEESEEEECSCEEESCSS
T ss_pred EEEEEeCCeEEEEEEeCCc------eeEEEcCEEEECcCCCcccCc
Confidence 8887665545443211111 127899999999999887653
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.5e-06 Score=78.04 Aligned_cols=90 Identities=16% Similarity=0.296 Sum_probs=68.1
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCCC--------------CCC---------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEI--------------LSS--------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~--------------l~~--------------- 281 (351)
+|+|||||.+|+.+|..|.+.+ . +|++++++.+ .+.
T Consensus 6 ~vvIIGaG~aGl~aA~~l~~~g--------------~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 71 (369)
T 3d1c_A 6 KVAIIGAGAAGIGMAITLKDFG--------------ITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAIS 71 (369)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSS
T ss_pred cEEEECcCHHHHHHHHHHHHcC--------------CCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhcc
Confidence 8999999999999999998766 6 8999988640 000
Q ss_pred -------------Cc-HHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 282 -------------FD-DRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 282 -------------~~-~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.. ..+...+.+.+++.|++++.++ |.+++.+ .|.+.+| ++.+|.||+|+|..+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~ 144 (369)
T 3d1c_A 72 MDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF 144 (369)
T ss_dssp TTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc
Confidence 01 2345556677788899999995 8888643 4555666 6899999999998765
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=7.6e-07 Score=84.81 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=69.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.- .+...+...........++.++. ..|
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------~~~~~~~~~l~~~l~~~gv~i~~~~~v 247 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA---------------SMDGEVAKATQKFLKKQGLDFKLSTKV 247 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS---------------SSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc---------------ccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 47999999999999999999999999999999775321 00111222222223344777765 478
Q ss_pred eeEeC--CCCEEEEEeec--CccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDT--DNHVVHCETVT--DELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~--~~~~v~~~~~~--~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
+.++. +.+.+.+...+ ++. ...+.+|.||+|+|..|+..
T Consensus 248 ~~i~~~~~~~~~~v~~~~~~~g~------~~~~~~D~vv~a~G~~p~~~ 290 (478)
T 1v59_A 248 ISAKRNDDKNVVEIVVEDTKTNK------QENLEAEVLLVAVGRRPYIA 290 (478)
T ss_dssp EEEEEETTTTEEEEEEEETTTTE------EEEEEESEEEECSCEEECCT
T ss_pred EEEEEecCCCeEEEEEEEcCCCC------ceEEECCEEEECCCCCcCCC
Confidence 88876 55544443211 111 12799999999999988765
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.1e-07 Score=82.73 Aligned_cols=101 Identities=18% Similarity=0.243 Sum_probs=70.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+..... .+...+...........++.++.. .|
T Consensus 142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~--------------~~~~~~~~~l~~~l~~~GV~i~~~~~v 207 (404)
T 3fg2_P 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMAR--------------VVTPEISSYFHDRHSGAGIRMHYGVRA 207 (404)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT--------------TSCHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhh--------------ccCHHHHHHHHHHHHhCCcEEEECCEE
Confidence 468999999999999999999999999999997763210 011112222222334457777654 77
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
..+..+...+..-.+.+|+ ++.+|.||+|+|..|..
T Consensus 208 ~~i~~~~~~v~~V~~~dG~--------~i~aD~Vv~a~G~~p~~ 243 (404)
T 3fg2_P 208 TEIAAEGDRVTGVVLSDGN--------TLPCDLVVVGVGVIPNV 243 (404)
T ss_dssp EEEEEETTEEEEEEETTSC--------EEECSEEEECCCEEECC
T ss_pred EEEEecCCcEEEEEeCCCC--------EEEcCEEEECcCCccCH
Confidence 8887655444322335676 89999999999998765
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-07 Score=89.40 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEEEEecCCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p 335 (351)
..+.+.+.+.+++.|++|++++ |++|.. + +|+++||+++.||.||.+++...
T Consensus 221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~ 278 (501)
T 4dgk_A 221 GALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVH 278 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC---
T ss_pred cchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHH
Confidence 4677888899999999999995 998853 3 58899999999999999887543
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-06 Score=79.58 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=71.5
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeC----C-CC------------CCCC-----cHHHHH
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----N-EI------------LSSF-----DDRLRH 288 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~----~-~~------------l~~~-----~~~~~~ 288 (351)
.+|+|||||+.|+.+|..|.+.+ .+|+++++ . .. .+.+ ...+..
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g--------------~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAE--------------LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTD 74 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHH
Confidence 38999999999999999998876 88999998 2 11 1112 246667
Q ss_pred HHHHHhhhcCcEEEcCeEEEEeC--C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 289 YATTQLSKSGVRLVRGIVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 289 ~~~~~l~~~gV~~~~~~v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+++.|++++.++|.+++. + .|.+ +|.++.+|.||+|+|.+|.
T Consensus 75 ~l~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~ 125 (333)
T 1vdc_A 75 KFRKQSERFGTTIFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAK 125 (333)
T ss_dssp HHHHHHHHTTCEEECCCCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEEC
T ss_pred HHHHHHHHCCCEEEEeEEEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcC
Confidence 77788888999999998777764 2 4555 7788999999999998876
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.5e-06 Score=75.44 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=66.6
Q ss_pred eEEEECCChHHHHHHHHHHHH-HHHHHHhhhcCCCCccEEEEEeCCCCCCC-----------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEANEILSS----------------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~----------------------------- 281 (351)
+|+|||||.+|+.+|..|++. + .+|+++++......
T Consensus 41 dVvIIGgG~aGl~aA~~la~~~G--------------~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~ 106 (284)
T 1rp0_A 41 DVVVVGAGSAGLSAAYEISKNPN--------------VQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAY 106 (284)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTT--------------SCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCC
T ss_pred CEEEECccHHHHHHHHHHHHcCC--------------CeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCc
Confidence 799999999999999999874 5 89999998642210
Q ss_pred ----------CcHHHHHHHHHHhhh-cCcEEEcCe-EEEEeC--C---eEEec---------CC-----cEEeccEEEEe
Q 018704 282 ----------FDDRLRHYATTQLSK-SGVRLVRGI-VKDVDS--Q---KLILN---------DG-----TEVPYGLLVWS 330 (351)
Q Consensus 282 ----------~~~~~~~~~~~~l~~-~gV~~~~~~-v~~v~~--~---~v~~~---------~g-----~~~~~D~vi~a 330 (351)
....+...+.+.+.+ .||+++.+. |.++.. + ++.+. +| .++++|.||+|
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~A 186 (284)
T 1rp0_A 107 DEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSS 186 (284)
T ss_dssp EECSSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEEC
T ss_pred ccCCCEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEEC
Confidence 123444556666655 699999994 888853 3 34442 32 56899999999
Q ss_pred cCCCCc
Q 018704 331 TGVGPS 336 (351)
Q Consensus 331 ~G~~p~ 336 (351)
+|..+.
T Consensus 187 tG~~s~ 192 (284)
T 1rp0_A 187 CGHDGP 192 (284)
T ss_dssp CCSSST
T ss_pred CCCchH
Confidence 997765
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=81.86 Aligned_cols=96 Identities=21% Similarity=0.300 Sum_probs=67.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+...-. .+...+...........++.++.. .|
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------~~~~~~~~~l~~~l~~~GV~i~~~~~v 210 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR--------------AAPATLADFVARYHAAQGVDLRFERSV 210 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT--------------TSCHHHHHHHHHHHHHTTCEEEESCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc--------------ccCHHHHHHHHHHHHHcCcEEEeCCEE
Confidence 479999999999999999999999999999997753210 001111122222233457777665 78
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
..++ ++ .+.+ .++. ++.+|.||+|+|..|+.
T Consensus 211 ~~i~-~~-~v~~---~~g~--------~i~~D~vi~a~G~~p~~ 241 (408)
T 2gqw_A 211 TGSV-DG-VVLL---DDGT--------RIAADMVVVGIGVLAND 241 (408)
T ss_dssp EEEE-TT-EEEE---TTSC--------EEECSEEEECSCEEECC
T ss_pred EEEE-CC-EEEE---CCCC--------EEEcCEEEECcCCCccH
Confidence 8887 43 4443 4565 89999999999988764
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-06 Score=78.31 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=72.9
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------------CCCC-----cHHHHHHHHHH
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQ 293 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------l~~~-----~~~~~~~~~~~ 293 (351)
.+|+|||||+.|+.+|..|.+.+ .+|+++++... .+.+ ..++...+.+.
T Consensus 15 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (335)
T 2a87_A 15 RDVIVIGSGPAGYTAALYAARAQ--------------LAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQ 80 (335)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTT--------------CCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHH
Confidence 48999999999999999998876 78999986421 1122 24666777778
Q ss_pred hhhcCcEEEcCeEEEEeC-C--eE-EecCCcEEeccEEEEecCCCCc
Q 018704 294 LSKSGVRLVRGIVKDVDS-Q--KL-ILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 294 l~~~gV~~~~~~v~~v~~-~--~v-~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+++.|++++.+++.+++. + .+ .+.+|+++.+|.||+|+|..|.
T Consensus 81 ~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~ 127 (335)
T 2a87_A 81 ALRFGADLRMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAAR 127 (335)
T ss_dssp HHHTTCEEECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred HHHcCCEEEEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCcc
Confidence 888899999998877764 2 46 6778888999999999998776
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=83.00 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=69.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-E
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (351)
...+|+|||||+.|+.+|..|++.|.+|+|+++.+.+.-. .+...+...........++.++.. .
T Consensus 193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------~~~~~~~~~l~~~l~~~GV~i~~~~~ 258 (490)
T 2bc0_A 193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG--------------YYDRDLTDLMAKNMEEHGIQLAFGET 258 (490)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--------------TSCHHHHHHHHHHHHTTTCEEEETCC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh--------------HHHHHHHHHHHHHHHhCCeEEEeCCE
Confidence 3578999999999999999999999999999997753210 011122222223344557777664 7
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
|+.++.+.+...+.. ++. ++.+|.||+|+|..|...
T Consensus 259 v~~i~~~~~v~~v~~--~g~--------~i~~D~Vi~a~G~~p~~~ 294 (490)
T 2bc0_A 259 VKEVAGNGKVEKIIT--DKN--------EYDVDMVILAVGFRPNTT 294 (490)
T ss_dssp EEEEECSSSCCEEEE--SSC--------EEECSEEEECCCEEECCG
T ss_pred EEEEEcCCcEEEEEE--CCc--------EEECCEEEECCCCCcChH
Confidence 888876443222222 455 899999999999887764
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.30 E-value=3e-06 Score=75.98 Aligned_cols=91 Identities=12% Similarity=0.147 Sum_probs=70.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------------CCCC----cHHHHHHHHHHh
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF----DDRLRHYATTQL 294 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------l~~~----~~~~~~~~~~~l 294 (351)
.+|+|||||+.|+.+|..|.+.+ .+|+++++... .+.+ ...+.+.+.+.+
T Consensus 17 ~dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (319)
T 3cty_A 17 FDVVIVGAGAAGFSAAVYAARSG--------------FSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHA 82 (319)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHhCC--------------CcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHH
Confidence 48999999999999999999876 88999998531 1221 245666777788
Q ss_pred hhcCcEEEcCeEEEEe--CC--eEEecCCcEEeccEEEEecCCCCc
Q 018704 295 SKSGVRLVRGIVKDVD--SQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 295 ~~~gV~~~~~~v~~v~--~~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
++.|++++.+++.+++ .+ .|.+ ++.++.+|.||+|+|.+|.
T Consensus 83 ~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~ 127 (319)
T 3cty_A 83 ANYAKIREGVEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHK 127 (319)
T ss_dssp HTTSEEEETCCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEEC
T ss_pred HHcCCEEEEeeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcc
Confidence 8889999997788775 34 3444 6678999999999998776
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.1e-06 Score=77.89 Aligned_cols=90 Identities=17% Similarity=0.276 Sum_probs=68.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC------------------C------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------S------------ 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~------------------~------------ 281 (351)
+|+|||||.+|+.+|..+++.| .+|+++++.+.+. .
T Consensus 6 dViIIGgG~aGl~aA~~la~~G--------------~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~ 71 (401)
T 2gqf_A 6 ENIIIGAGAAGLFCAAQLAKLG--------------KSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFV 71 (401)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTST
T ss_pred CEEEECCcHHHHHHHHHHHhCC--------------CCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHH
Confidence 7999999999999999999876 7899988864210 0
Q ss_pred -----------------------------------CcHHHHHHHHHHhhhcCcEEEcCe-EEEEe-C-----Ce--EEec
Q 018704 282 -----------------------------------FDDRLRHYATTQLSKSGVRLVRGI-VKDVD-S-----QK--LILN 317 (351)
Q Consensus 282 -----------------------------------~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~-~-----~~--v~~~ 317 (351)
....+.+.+.+.+++.||+++.+. |+++. . ++ |.+.
T Consensus 72 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~ 151 (401)
T 2gqf_A 72 KSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVN 151 (401)
T ss_dssp HHHHHHSCHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEET
T ss_pred HHHHHhCCHHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEEC
Confidence 123444567777888899999995 88875 2 32 4455
Q ss_pred CCcEEeccEEEEecCCCCc
Q 018704 318 DGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 318 ~g~~~~~D~vi~a~G~~p~ 336 (351)
+| ++.+|.||+|+|..+.
T Consensus 152 ~g-~i~ad~VVlAtG~~s~ 169 (401)
T 2gqf_A 152 ST-QWQCKNLIVATGGLSM 169 (401)
T ss_dssp TE-EEEESEEEECCCCSSC
T ss_pred CC-EEECCEEEECCCCccC
Confidence 55 7999999999999883
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.8e-06 Score=75.78 Aligned_cols=91 Identities=19% Similarity=0.297 Sum_probs=66.5
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC----C---CC-------CcHHHHHHHHHHhhhc
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----L---SS-------FDDRLRHYATTQLSKS 297 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----l---~~-------~~~~~~~~~~~~l~~~ 297 (351)
.|+|||||+.|+.+|..+++.+ .+|++++++.. . +. .++++.+...+.+.+.
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRAR--------------KQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKY 73 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhc
Confidence 7999999999999999998877 89999998531 0 11 1244555544544444
Q ss_pred -CcEEEcCeEEEEeC---C--eEEecCCcEEeccEEEEecCCCCc
Q 018704 298 -GVRLVRGIVKDVDS---Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 -gV~~~~~~v~~v~~---~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
++.++.+.+..+.. + .+.+.+|+++++|.||+|||.+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~ 118 (304)
T 4fk1_A 74 PSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEE 118 (304)
T ss_dssp TTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEE
T ss_pred CCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccc
Confidence 56777776555432 1 577889999999999999998876
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.4e-06 Score=80.62 Aligned_cols=94 Identities=27% Similarity=0.466 Sum_probs=65.8
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC----Cc---------HHHHHHHHHHh-hh
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----FD---------DRLRHYATTQL-SK 296 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~----~~---------~~~~~~~~~~l-~~ 296 (351)
++|+|||||..|+.+|..|.+.+ ++.+|+++++.+.... ++ ..+.....+.+ ++
T Consensus 4 ~~VvIIGgG~aGl~aA~~L~~~~------------~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 71 (449)
T 3kd9_A 4 KKVVIIGGGAAGMSAASRVKRLK------------PEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKK 71 (449)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC------------TTSEEEEECSSSCCC------------------------CTHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHHhC------------cCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHh
Confidence 48999999999999999998762 2379999999753211 11 11111122223 57
Q ss_pred cCcEEEcC-eEEEEeCC--eEEecCC-cEEeccEEEEecCCCCc
Q 018704 297 SGVRLVRG-IVKDVDSQ--KLILNDG-TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 297 ~gV~~~~~-~v~~v~~~--~v~~~~g-~~~~~D~vi~a~G~~p~ 336 (351)
.||+++.+ +|.+++.+ .+.+.+| .++.+|.||+|||.+|.
T Consensus 72 ~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~ 115 (449)
T 3kd9_A 72 RGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQ 115 (449)
T ss_dssp TTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEEC
T ss_pred cCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCC
Confidence 89999999 69999765 4555566 47999999999998876
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-06 Score=82.90 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=69.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. .+...+...........++.++. .+|
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------~~~~~~~~~l~~~l~~~Gv~i~~~~~v 243 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV--------------GIDMEISKNFQRILQKQGFKFKLNTKV 243 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS--------------SCCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc--------------ccCHHHHHHHHHHHHHCCCEEEeCceE
Confidence 478999999999999999999999999999997763210 01111222222223344677665 478
Q ss_pred eeEeCCCCE-EEEEe----ecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHV-VHCET----VTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~-v~~~~----~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
+.++.+.+. +.+.. ..++. ++.+|.||+|+|..|+..
T Consensus 244 ~~i~~~~~~~~~v~~~~~~~~~~~--------~i~~D~vv~a~G~~p~~~ 285 (474)
T 1zmd_A 244 TGATKKSDGKIDVSIEAASGGKAE--------VITCDVLLVCIGRRPFTK 285 (474)
T ss_dssp EEEEECTTSCEEEEEEETTSCCCE--------EEEESEEEECSCEEECCT
T ss_pred EEEEEcCCceEEEEEEecCCCCce--------EEEcCEEEECcCCCcCCC
Confidence 888766543 44432 12333 799999999999988764
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-06 Score=84.37 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=70.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
+.+++|||||+.|+..|..+++.|.+|||+++...+. . ....+...........++.++.. .+
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~------~----------~D~ei~~~l~~~l~~~gi~~~~~~~v 286 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR------G----------FDQQCAVKVKLYMEEQGVMFKNGILP 286 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST------T----------SCHHHHHHHHHHHHHTTCEEEETCCE
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc------c----------cchhHHHHHHHHHHhhcceeecceEE
Confidence 4789999999999999999999999999998754321 0 11222222233344456766554 67
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..+......+.+.. .++. .+.+|.|++|+|-.|+...
T Consensus 287 ~~~~~~~~~~~v~~-~~~~--------~~~~D~vLvAvGR~Pnt~~ 323 (542)
T 4b1b_A 287 KKLTKMDDKILVEF-SDKT--------SELYDTVLYAIGRKGDIDG 323 (542)
T ss_dssp EEEEEETTEEEEEE-TTSC--------EEEESEEEECSCEEESCGG
T ss_pred EEEEecCCeEEEEE-cCCC--------eEEEEEEEEcccccCCccc
Confidence 77777777776644 3454 7889999999999888753
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.2e-06 Score=76.80 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=72.0
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------------CCCC-----cHHHHHHHHHH
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQ 293 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------l~~~-----~~~~~~~~~~~ 293 (351)
.+|+|||||+.|+.+|..|.+.+ .+|+++++... .+.+ ...+.+.+.+.
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (320)
T 1trb_A 6 SKLLILGSGPAGYTAAVYAARAN--------------LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEH 71 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--------------CCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHH
Confidence 48999999999999999998766 78999986421 1122 24666777778
Q ss_pred hhhcCcEEEcCeEEEEeC--CeEE-ecCCcEEeccEEEEecCCCCc
Q 018704 294 LSKSGVRLVRGIVKDVDS--QKLI-LNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 294 l~~~gV~~~~~~v~~v~~--~~v~-~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+++.|++++.+++..++. +.+. +.+|.++.+|.||+|+|.+|.
T Consensus 72 ~~~~~~~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~ 117 (320)
T 1trb_A 72 ATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117 (320)
T ss_dssp HHHTTCEEECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred HHHCCCEEEEeeeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcC
Confidence 888999999998888764 3333 567888999999999998766
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-06 Score=83.36 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=68.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+...- . +...+.+.........++.++.. +|
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--~-------------~~~~~~~~l~~~l~~~Gv~i~~~~~v 231 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP--S-------------FDPMISETLVEVMNAEGPQLHTNAIP 231 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST--T-------------SCHHHHHHHHHHHHHHSCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh--h-------------hhHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 46899999999999999999999999999999765320 0 01111111112222346666654 67
Q ss_pred eeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.+.. .+.+.. .+++ .+.+|.||+|+|..|+..
T Consensus 232 ~~i~~~~~~~~~v~~-~~g~--------~i~~D~vv~a~G~~p~~~ 268 (450)
T 1ges_A 232 KAVVKNTDGSLTLEL-EDGR--------SETVDCLIWAIGREPAND 268 (450)
T ss_dssp EEEEECTTSCEEEEE-TTSC--------EEEESEEEECSCEEESCT
T ss_pred EEEEEeCCcEEEEEE-CCCc--------EEEcCEEEECCCCCcCCC
Confidence 88876532 233332 4565 899999999999988764
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-06 Score=75.35 Aligned_cols=91 Identities=23% Similarity=0.315 Sum_probs=71.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC----C-------------CCC-----cHHHHHH
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----L-------------SSF-----DDRLRHY 289 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----l-------------~~~-----~~~~~~~ 289 (351)
.|+|||||+.|+.+|..+++.+ .+|+++++... + +.+ ..++...
T Consensus 6 DvvIIG~GpAGl~AA~~la~~g--------------~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~ 71 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLGRSS--------------LKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMN 71 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHH
Confidence 7999999999999999999877 88999987531 1 111 2456777
Q ss_pred HHHHhhhcCcEEEcCeEEEEeCC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 290 ATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 290 ~~~~l~~~gV~~~~~~v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+++.++++....+.....+ .+.+.++.++.+|.||+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~ 122 (314)
T 4a5l_A 72 MRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAK 122 (314)
T ss_dssp HHHHHHHTTCEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEEC
T ss_pred HHHHHhhcCcEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEccccccc
Confidence 78888899999998876655432 456678889999999999998776
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-06 Score=82.51 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=69.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+.- . +...+...........++.++. ..|
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~-------------~~~~~~~~l~~~l~~~gv~i~~~~~v 235 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP--N-------------EDADVSKEIEKQFKKLGVTILTATKV 235 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST--T-------------SCHHHHHHHHHHHHHHTCEEECSCEE
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc--c-------------cCHHHHHHHHHHHHHcCCEEEeCcEE
Confidence 47999999999999999999999999999999875320 0 1111111122222334666665 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..++.+...+.+....+++ ...+.+|.||+|+|..|+...
T Consensus 236 ~~i~~~~~~~~v~~~~~g~------~~~~~~D~vv~a~G~~p~~~~ 275 (464)
T 2a8x_A 236 ESIADGGSQVTVTVTKDGV------AQELKAEKVLQAIGFAPNVEG 275 (464)
T ss_dssp EEEEECSSCEEEEEESSSC------EEEEEESEEEECSCEEECCSS
T ss_pred EEEEEcCCeEEEEEEcCCc------eEEEEcCEEEECCCCCccCCC
Confidence 8887655444443222331 127899999999999887653
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.9e-06 Score=78.61 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=71.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+... .+...+.+.........++.++. ..|
T Consensus 147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------~~d~~~~~~l~~~l~~~GV~i~~~~~v 212 (452)
T 3oc4_A 147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK--------------YFDKEMVAEVQKSLEKQAVIFHFEETV 212 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT--------------TCCHHHHHHHHHHHHTTTEEEEETCCE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc--------------cCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 478999999999999999999999999999997763210 01122222233334456888776 578
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..+..+...+.+.. ++. ++.+|.||+|+|..|+...
T Consensus 213 ~~i~~~~~~v~v~~--~~g--------~i~aD~Vv~A~G~~p~~~~ 248 (452)
T 3oc4_A 213 LGIEETANGIVLET--SEQ--------EISCDSGIFALNLHPQLAY 248 (452)
T ss_dssp EEEEECSSCEEEEE--SSC--------EEEESEEEECSCCBCCCSS
T ss_pred EEEEccCCeEEEEE--CCC--------EEEeCEEEECcCCCCChHH
Confidence 88875555554433 333 7899999999999887653
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=83.55 Aligned_cols=101 Identities=10% Similarity=0.118 Sum_probs=69.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.+.-. +...+...........++.++.. .|
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~---------------~~~~~~~~l~~~l~~~gV~i~~~~~v 249 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG---------------ADRDLVKVWQKQNEYRFDNIMVNTKT 249 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT---------------SCHHHHHHHHHHHGGGEEEEECSCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc---------------cCHHHHHHHHHHHHhcCCEEEECCEE
Confidence 479999999999999999999999999999997763210 11112222222233457777654 78
Q ss_pred eeEeCCCCEEEEEeec--C-ccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVT--D-ELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~--~-~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.+.+.+.+...+ . ++ ++.+|.||+|+|..|+..
T Consensus 250 ~~i~~~~~~~~v~~~~~~~~g~--------~~~~D~vv~a~G~~p~~~ 289 (482)
T 1ojt_A 250 VAVEPKEDGVYVTFEGANAPKE--------PQRYDAVLVAAGRAPNGK 289 (482)
T ss_dssp EEEEEETTEEEEEEESSSCCSS--------CEEESCEEECCCEEECGG
T ss_pred EEEEEcCCeEEEEEeccCCCce--------EEEcCEEEECcCCCcCCC
Confidence 8887655544443221 1 44 688999999999988763
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=98.25 E-value=2e-06 Score=81.31 Aligned_cols=101 Identities=17% Similarity=0.320 Sum_probs=68.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. .+...+...........++.++.. +|
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------~~~~~~~~~l~~~l~~~Gv~i~~~~~v 214 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK--------------YFDKEFTDILAKDYEAHGVNLVLGSKV 214 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT--------------TSCHHHHHHHHHHHHHTTCEEEESSCE
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh--------------hhhhhHHHHHHHHHHHCCCEEEcCCee
Confidence 468999999999999999999999999999987753210 011112222222233457777654 78
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.+...+..... ++. ++.+|.||+|+|..|+..
T Consensus 215 ~~i~~~~~~v~~v~~-~g~--------~i~~D~vv~a~G~~p~~~ 250 (452)
T 2cdu_A 215 AAFEEVDDEIITKTL-DGK--------EIKSDIAILCIGFRPNTE 250 (452)
T ss_dssp EEEEEETTEEEEEET-TSC--------EEEESEEEECCCEEECCG
T ss_pred EEEEcCCCeEEEEEe-CCC--------EEECCEEEECcCCCCCHH
Confidence 888763444432122 455 899999999999987754
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.24 E-value=3.8e-06 Score=80.84 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=73.5
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC---CCC--------C----CCcHHHHHHHHHHhh
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL--------S----SFDDRLRHYATTQLS 295 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~l--------~----~~~~~~~~~~~~~l~ 295 (351)
.+|+|||||+.|+.+|..|++.| .+|+++++. .+. . ...+.+...+.+.++
T Consensus 213 ~dVvIIGgG~AGl~aA~~la~~G--------------~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 278 (521)
T 1hyu_A 213 YDVLIVGSGPAGAAAAVYSARKG--------------IRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVS 278 (521)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHH
T ss_pred ccEEEECCcHHHHHHHHHHHhCC--------------CeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999876 889999763 111 0 112567777888888
Q ss_pred hcCcEEEcC-eEEEEeC-------CeEEecCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRG-IVKDVDS-------QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~-~v~~v~~-------~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.||+++.+ +|..++. ..|.+.+|.++.+|.||+|+|.+|.
T Consensus 279 ~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~ 327 (521)
T 1hyu_A 279 DYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWR 327 (521)
T ss_dssp TSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred HcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 999999999 5998853 2467788889999999999998765
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.3e-07 Score=84.75 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=31.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+++||+||||||+||++|..|++.|++|+|||+.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 45799999999999999999999999999999876
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.1e-06 Score=82.83 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=32.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~ 96 (351)
.+||||||||+|||++|+.|++.| .+|+|||+...
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~ 41 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP 41 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence 479999999999999999999999 99999998753
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.8e-06 Score=81.23 Aligned_cols=103 Identities=18% Similarity=0.140 Sum_probs=68.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEE-EEEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.- . +...+.+......... +.++ ...|
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~--~-------------~d~~~~~~l~~~l~~~-V~i~~~~~v 237 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN--L-------------QDEEMKRYAEKTFNEE-FYFDAKARV 237 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT--C-------------CCHHHHHHHHHHHHTT-SEEETTCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc--c-------------CCHHHHHHHHHHHhhC-cEEEECCEE
Confidence 57999999999999999999999999999999876320 0 0111111111122222 5544 3467
Q ss_pred eeEeCCCCEEEEEee-cCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~-~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..+..+.+.+.+... .+|+ ..++.+|.||+|+|..|+...
T Consensus 238 ~~i~~~~~~v~v~~~~~~G~------~~~i~~D~Vi~a~G~~p~~~~ 278 (492)
T 3ic9_A 238 ISTIEKEDAVEVIYFDKSGQ------KTTESFQYVLAATGRKANVDK 278 (492)
T ss_dssp EEEEECSSSEEEEEECTTCC------EEEEEESEEEECSCCEESCSS
T ss_pred EEEEEcCCEEEEEEEeCCCc------eEEEECCEEEEeeCCccCCCC
Confidence 777766555554332 2341 128999999999999887654
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.6e-06 Score=81.56 Aligned_cols=100 Identities=13% Similarity=0.183 Sum_probs=68.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+... +. +...+...........++.++.. +|
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l--~~-------------~d~~~~~~l~~~l~~~gv~i~~~~~v 240 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL--RK-------------FDESVINVLENDMKKNNINIVTFADV 240 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC--TT-------------SCHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC--cc-------------cchhhHHHHHHHHHhCCCEEEECCEE
Confidence 5799999999999999999999999999999977632 00 11112222222233447776654 67
Q ss_pred eeEeCCC-CEEEEEeecCccccCCCceeE-eeccEEEEecCCCcCCC
Q 018704 141 AGIDTDN-HVVHCETVTDELRTLEPWKFK-ISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~-~~v~~~~~~~~~~~~~~~~~~-~~~d~lviAtG~~p~~p 185 (351)
..++.+. ..+.+.. .+|+ . +.+|.||+|+|..|+..
T Consensus 241 ~~i~~~~~~~~~v~~-~~g~--------~~~~~D~vi~a~G~~p~~~ 278 (500)
T 1onf_A 241 VEIKKVSDKNLSIHL-SDGR--------IYEHFDHVIYCVGRSPDTE 278 (500)
T ss_dssp EEEEESSTTCEEEEE-TTSC--------EEEEESEEEECCCBCCTTT
T ss_pred EEEEEcCCceEEEEE-CCCc--------EEEECCEEEECCCCCcCCC
Confidence 7787543 2233332 4555 5 89999999999988764
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=7e-06 Score=75.38 Aligned_cols=90 Identities=32% Similarity=0.492 Sum_probs=66.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCC------------c-HHHHHHHHHHhhhc
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF------------D-DRLRHYATTQLSKS 297 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~------------~-~~~~~~~~~~l~~~ 297 (351)
.+++|||||+.|+.+|..|.+. + +|++++++...... + ..+.....+.+++.
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~--------------g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 73 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQT--------------Y-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKR 73 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTT--------------S-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHhhc--------------C-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhC
Confidence 4999999999999999998642 3 89999987532111 1 11111223456678
Q ss_pred CcEEEcCe-EEEEeCC--eEEecCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-VKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
||+++.++ |..++.+ .|. .+|+++++|.+|+|||.+|.
T Consensus 74 ~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~ 114 (367)
T 1xhc_A 74 GIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARAR 114 (367)
T ss_dssp TEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEEC
T ss_pred CcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCC
Confidence 99999994 9888764 555 67888999999999998887
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=98.22 E-value=9.3e-07 Score=83.64 Aligned_cols=52 Identities=10% Similarity=-0.031 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEe----CC---eEEecCCcEEeccEEEEecCCCCc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVD----SQ---KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~----~~---~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..+.+.+.+.+++.|+++++++ |+++. ++ +|.+ +|+++.||.||+|+|..+.
T Consensus 242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~ 301 (453)
T 2bcg_G 242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE 301 (453)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence 3778888889999999999995 87774 33 3444 6888999999999998875
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=4e-06 Score=79.49 Aligned_cols=90 Identities=22% Similarity=0.399 Sum_probs=68.1
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~------------------------------- 280 (351)
+|+|||||..|+.+|..|.+.+ .+|++++++.+..
T Consensus 6 dVvIIGgG~aGl~aA~~l~~~g--------------~~V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~ 71 (463)
T 2r9z_A 6 DLIAIGGGSGGLAVAEKAAAFG--------------KRVALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGV 71 (463)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTB
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CcEEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCc
Confidence 8999999999999999998866 8999999874210
Q ss_pred -----CCcH------------HHHHHHHHHhhhcCcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 281 -----SFDD------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 281 -----~~~~------------~~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..+. .+...+.+.+++.||+++.+++..++...|.+ +|+++.+|.+|+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~ 143 (463)
T 2r9z_A 72 QASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV-EGQRLSADHIVIATGGRPI 143 (463)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE-TTEEEEEEEEEECCCEEEC
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEE-CCEEEEcCEEEECCCCCCC
Confidence 0010 01112233456789999999877777778888 7788999999999998876
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=7.1e-07 Score=83.67 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=33.4
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
+||+|||||++||+||+.|++.|++|+|||+++...
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~G 37 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLG 37 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSB
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcc
Confidence 699999999999999999999999999999977643
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.5e-06 Score=80.48 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=70.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.. .+...+.+.........++.++. ..|
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------~~d~~~~~~l~~~l~~~gV~v~~~~~v 262 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG---------------GMDGEVAKQLQRMLTKQGIDFKLGAKV 262 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS---------------SSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc---------------cCCHHHHHHHHHHHHhCCCEEEECCeE
Confidence 47899999999999999999999999999998776321 01111222222223344677665 478
Q ss_pred eeEeCCCCEEEEEee--cCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDTDNHVVHCETV--TDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~--~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..+..+...+.+... .+++ ...+.+|.||+|+|..|....
T Consensus 263 ~~i~~~~~~~~v~~~~~~~g~------~~~i~~D~Vi~a~G~~p~~~~ 304 (491)
T 3urh_A 263 TGAVKSGDGAKVTFEPVKGGE------ATTLDAEVVLIATGRKPSTDG 304 (491)
T ss_dssp EEEEEETTEEEEEEEETTSCC------CEEEEESEEEECCCCEECCTT
T ss_pred EEEEEeCCEEEEEEEecCCCc------eEEEEcCEEEEeeCCccCCCc
Confidence 888766665544332 1131 137899999999999887653
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-06 Score=83.57 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=33.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMV 98 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~~~ 98 (351)
++||+|||||++||+||++|++.|. +|+|+|+++...
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~G 40 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLG 40 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSB
T ss_pred CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence 3799999999999999999999999 999999987653
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.19 E-value=8.6e-06 Score=75.48 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=69.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~------------------------------- 280 (351)
+|+|||||.+|+-+|..|++.| .+|+++++.....
T Consensus 8 dVvIVGaG~aGl~~A~~L~~~G--------------~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~ 73 (399)
T 2x3n_A 8 DVLINGCGIGGAMLAYLLGRQG--------------HRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGR 73 (399)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCE
T ss_pred CEEEECcCHHHHHHHHHHHhCC--------------CcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCC
Confidence 8999999999999999999866 6677776642110
Q ss_pred ------------------------------CCcHHHHHHHHHHhhhc-CcEEEcCe-EEEEeC--C----eEEecCCcEE
Q 018704 281 ------------------------------SFDDRLRHYATTQLSKS-GVRLVRGI-VKDVDS--Q----KLILNDGTEV 322 (351)
Q Consensus 281 ------------------------------~~~~~~~~~~~~~l~~~-gV~~~~~~-v~~v~~--~----~v~~~~g~~~ 322 (351)
.....+.+.+.+.+++. |++++.+. |++++. + .+.+.+|+++
T Consensus 74 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~ 153 (399)
T 2x3n_A 74 VRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVL 153 (399)
T ss_dssp EECEEEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEE
T ss_pred cceeEEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEE
Confidence 00124556666777777 99999994 888864 2 5677889899
Q ss_pred eccEEEEecCCCCc
Q 018704 323 PYGLLVWSTGVGPS 336 (351)
Q Consensus 323 ~~D~vi~a~G~~p~ 336 (351)
++|.||.|+|..+.
T Consensus 154 ~ad~vV~AdG~~s~ 167 (399)
T 2x3n_A 154 RPRVVVGADGIASY 167 (399)
T ss_dssp EEEEEEECCCTTCH
T ss_pred ECCEEEECCCCChH
Confidence 99999999998876
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.1e-06 Score=79.22 Aligned_cols=91 Identities=23% Similarity=0.287 Sum_probs=71.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~------------------------------ 281 (351)
+|+|||||..|+-+|..|++.| .+|++++++.+...
T Consensus 28 DVvVIGgG~aGl~aA~~la~~G--------------~~V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~ 93 (484)
T 3o0h_A 28 DLFVIGSGSGGVRAARLAGALG--------------KRVAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGW 93 (484)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTB
T ss_pred CEEEECcCHHHHHHHHHHHhCc--------------CEEEEEeCCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCc
Confidence 8999999999999999999877 89999998532110
Q ss_pred ------Cc------------HHHHHHHHHHhhhcCcEEEcCeEEEEeCCeEEec-CCcEEeccEEEEecCCCCc
Q 018704 282 ------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILN-DGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 282 ------~~------------~~~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~~-~g~~~~~D~vi~a~G~~p~ 336 (351)
++ ..+...+.+.+++.+|+++.+.+..++...+.+. ++.++.+|.+|+|||.+|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~ 167 (484)
T 3o0h_A 94 KYADPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIV 167 (484)
T ss_dssp CCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEEC
T ss_pred ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcc
Confidence 00 0122334455677899999998888888888887 7889999999999997765
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.2e-06 Score=81.69 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=67.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.... . +...+...........++.++.. +|
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~--~-------------~d~~~~~~l~~~l~~~Gv~i~~~~~v 249 (479)
T 2hqm_A 185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR--K-------------FDECIQNTITDHYVKEGINVHKLSKI 249 (479)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT--T-------------SCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc--c-------------cCHHHHHHHHHHHHhCCeEEEeCCEE
Confidence 47899999999999999999999999999999776321 0 01111111122223346776654 67
Q ss_pred eeEeCCCCE--EEEEeecCc-cccCCCceeEeeccEEEEecCCCcCC
Q 018704 141 AGIDTDNHV--VHCETVTDE-LRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 141 ~~i~~~~~~--v~~~~~~~~-~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
..++.+.+. +.+.. .+| . .+.+|.||+|+|..|+.
T Consensus 250 ~~i~~~~~~~~~~v~~-~~G~~--------~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 250 VKVEKNVETDKLKIHM-NDSKS--------IDDVDELIWTIGRKSHL 287 (479)
T ss_dssp EEEEECC-CCCEEEEE-TTSCE--------EEEESEEEECSCEEECC
T ss_pred EEEEEcCCCcEEEEEE-CCCcE--------EEEcCEEEECCCCCCcc
Confidence 777754322 33332 455 4 89999999999998876
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.1e-06 Score=80.43 Aligned_cols=100 Identities=14% Similarity=0.228 Sum_probs=70.1
Q ss_pred CCcEEEECCchhHHHHHHhhhcc-CceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-E
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (351)
..+|+|||+|+.|+.+|..|++. |.+|+++++.+...-. .....+...........++.++.. .
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~--------------~~~~~~~~~l~~~l~~~GV~i~~~~~ 224 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPG--------------FTSKSLSQMLRHDLEKNDVVVHTGEK 224 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTT--------------TSCHHHHHHHHHHHHHTTCEEECSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccccc--------------ccCHHHHHHHHHHHHhcCCEEEeCCE
Confidence 47899999999999999999999 9999999997753210 011112222222334457777664 7
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
|..++.+...+.+.. .+++ ++.+|.||+|+|..|..
T Consensus 225 v~~i~~~~~~v~v~~-~~g~--------~i~aD~Vv~a~G~~p~~ 260 (472)
T 3iwa_A 225 VVRLEGENGKVARVI-TDKR--------TLDADLVILAAGVSPNT 260 (472)
T ss_dssp EEEEEESSSBEEEEE-ESSC--------EEECSEEEECSCEEECC
T ss_pred EEEEEccCCeEEEEE-eCCC--------EEEcCEEEECCCCCcCH
Confidence 888887555554433 4565 89999999999998764
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1e-05 Score=76.66 Aligned_cols=92 Identities=20% Similarity=0.350 Sum_probs=67.6
Q ss_pred CeEEEECCChHHHHHHHHHHH---HHHHHHHhhhcCCCCccE---EEEEeCCCCCC------------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSD---FIMRDVRQRYSHVKDYIH---VTLIEANEILS------------------------ 280 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~---~~~~~~~~~~~~~~~~~~---v~~~~~~~~l~------------------------ 280 (351)
++|+|||||++|+.+|..|.+ .| .+ |+++++...+.
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G--------------~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~ 68 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKG--------------AEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYR 68 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTT--------------CCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcC--------------CCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCcccc
Confidence 389999999999999999987 54 66 99999863110
Q ss_pred --------------CC---------------cHHHHHHHHHHhhhcCcE--EEcCe-EEEEeC--C----eEEecC---C
Q 018704 281 --------------SF---------------DDRLRHYATTQLSKSGVR--LVRGI-VKDVDS--Q----KLILND---G 319 (351)
Q Consensus 281 --------------~~---------------~~~~~~~~~~~l~~~gV~--~~~~~-v~~v~~--~----~v~~~~---g 319 (351)
.+ ...+.+.+.+.+++.|++ ++.+. |++++. + .|.+.+ |
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g 148 (464)
T 2xve_A 69 YLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTD 148 (464)
T ss_dssp TCBCSSCGGGTCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTT
T ss_pred chhhcCChhhcccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCC
Confidence 00 034556677777778988 88884 888853 3 566654 4
Q ss_pred --cEEeccEEEEecC--CCCc
Q 018704 320 --TEVPYGLLVWSTG--VGPS 336 (351)
Q Consensus 320 --~~~~~D~vi~a~G--~~p~ 336 (351)
.++.+|.||+|+| ..|+
T Consensus 149 ~~~~~~~d~VVvAtG~~s~p~ 169 (464)
T 2xve_A 149 TIYSEEFDYVVCCTGHFSTPY 169 (464)
T ss_dssp EEEEEEESEEEECCCSSSSBC
T ss_pred ceEEEEcCEEEECCCCCCCCc
Confidence 5689999999999 5666
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=8.5e-06 Score=76.85 Aligned_cols=85 Identities=9% Similarity=0.011 Sum_probs=62.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCce-EEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (351)
..++|+|||+|.+|+-+|..|++.+.+ |+++++.+.+ ....++. ....
T Consensus 211 ~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~------------------------------l~~~~i~-~~~~ 259 (447)
T 2gv8_A 211 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD------------------------------IQNESLQ-QVPE 259 (447)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS------------------------------CBCSSEE-EECC
T ss_pred CCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc------------------------------CCCCCeE-EecC
Confidence 357899999999999999999999999 9999987653 0012333 2456
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
|..+..+...+.+ .+|+ ..+.+|.||+|||..|..+-
T Consensus 260 v~~~~~~~~~v~~---~dG~-------~~~~~D~vi~atG~~~~~~~ 296 (447)
T 2gv8_A 260 ITKFDPTTREIYL---KGGK-------VLSNIDRVIYCTGYLYSVPF 296 (447)
T ss_dssp EEEEETTTTEEEE---TTTE-------EECCCSEEEECCCBCCCCCC
T ss_pred eEEEecCCCEEEE---CCCC-------EeccCCEEEECCCCCcCCCC
Confidence 6666655556654 3554 13789999999999988765
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-06 Score=81.24 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=67.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (351)
...+|+|||||++|+.+|..|++.|.+|+++++.+.... .+...+...........++.++. ..
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------~~~~~~~~~l~~~l~~~Gv~i~~~~~ 249 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT---------------IYDGDMAEYIYKEADKHHIEILTNEN 249 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS---------------SSCHHHHHHHHHHHHHTTCEEECSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh---------------cCCHHHHHHHHHHHHHcCcEEEcCCE
Confidence 357999999999999999999999999999998765321 00111212222223334677664 47
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
|+.++.+.+...+.. ++. ++.+|.||+|+|..|+.+
T Consensus 250 v~~i~~~~~v~~v~~--~~~--------~i~~D~vi~a~G~~p~~~ 285 (480)
T 3cgb_A 250 VKAFKGNERVEAVET--DKG--------TYKADLVLVSVGVKPNTD 285 (480)
T ss_dssp EEEEEESSBEEEEEE--TTE--------EEECSEEEECSCEEESCG
T ss_pred EEEEEcCCcEEEEEE--CCC--------EEEcCEEEECcCCCcChH
Confidence 777776544333322 233 799999999999887654
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.5e-06 Score=79.97 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=68.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhh-cCCCeEEEE-EE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAIS-REPGSYFFL-SH 139 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~ 139 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.- . +...+........ ...++.++. .+
T Consensus 174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~-------------~d~~~~~~l~~~l~~~~gv~i~~~~~ 238 (468)
T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP--T-------------LDEDVTNALVGALAKNEKMKFMTSTK 238 (468)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST--T-------------SCHHHHHHHHHHHHHHTCCEEECSCE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc--c-------------CCHHHHHHHHHHHhhcCCcEEEeCCE
Confidence 47999999999999999999999999999999776320 0 1111222222223 345777665 47
Q ss_pred eeeEeCCCCEEEEEee-cCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 140 CAGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~-~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
|..++.+...+.+... .+++ ..++.+|.||+|+|..|+..
T Consensus 239 v~~i~~~~~~~~v~~~~~~g~------~~~i~~D~vv~a~G~~p~~~ 279 (468)
T 2qae_A 239 VVGGTNNGDSVSLEVEGKNGK------RETVTCEALLVSVGRRPFTG 279 (468)
T ss_dssp EEEEEECSSSEEEEEECC---------EEEEEESEEEECSCEEECCT
T ss_pred EEEEEEcCCeEEEEEEcCCCc------eEEEECCEEEECCCcccCCC
Confidence 8888766544443321 1331 12789999999999988764
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-06 Score=82.15 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce---EEecCCcEEeccEEEEecCCCCc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~---v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..+.+.+.+.+++.|+++++++ |+++.. ++ |.+ +|++++||.||+|+|....
T Consensus 196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~ 253 (425)
T 3ka7_A 196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAAT 253 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHH
Confidence 5678888899999999999995 988853 33 444 5788999999999997654
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-06 Score=82.17 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeEEecCCcEEeccEEEEecCCCCc
Q 018704 283 DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
...+.+.+.+.+++.|+++++++ |+++.. ++++..+|.+++||.||+|+|....
T Consensus 188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~vV~~~g~~~~ad~Vv~a~~~~~~ 244 (421)
T 3nrn_A 188 CKAVIDELERIIMENKGKILTRKEVVEINIEEKKVYTRDNEEYSFDVAISNVGVRET 244 (421)
T ss_dssp HHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEEEETTCCEEECSEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEEEEeCCcEEEeCEEEECCCHHHH
Confidence 35788889999999999999995 999864 4555667888999999999997544
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.2e-06 Score=80.72 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=69.9
Q ss_pred CCcEEEECCchhHHHHHHhhhcc---CceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
..+++|||||+.|+.+|..|++. |.+|+++++.+.+.- . +...+...........++.++..
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~--~-------------~d~~~~~~l~~~l~~~GV~i~~~ 251 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR--G-------------FDSELRKQLTEQLRANGINVRTH 251 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST--T-------------SCHHHHHHHHHHHHHTTEEEEET
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc--c-------------cCHHHHHHHHHHHHhCCCEEEeC
Confidence 46999999999999999999998 999999999875320 0 11112222222233457777664
Q ss_pred -EeeeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 139 -HCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 139 -~v~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
.|..++.+.. .+.+.. .+++ .+.+|.||+|+|..|+..
T Consensus 252 ~~v~~i~~~~~~~~~v~~-~~G~--------~i~~D~vv~a~G~~p~~~ 291 (490)
T 1fec_A 252 ENPAKVTKNADGTRHVVF-ESGA--------EADYDVVMLAIGRVPRSQ 291 (490)
T ss_dssp CCEEEEEECTTSCEEEEE-TTSC--------EEEESEEEECSCEEESCT
T ss_pred CEEEEEEEcCCCEEEEEE-CCCc--------EEEcCEEEEccCCCcCcc
Confidence 7888876542 344432 4565 899999999999988764
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.9e-06 Score=81.17 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=69.1
Q ss_pred CCcEEEECCchhHHHHHHhhhcc---CceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
..+|+|||||+.|+.+|..|++. |.+|+++++.+...- . +...+...........++.++..
T Consensus 191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~--~-------------~d~~~~~~l~~~l~~~GV~i~~~ 255 (495)
T 2wpf_A 191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR--G-------------FDETIREEVTKQLTANGIEIMTN 255 (495)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT--T-------------SCHHHHHHHHHHHHHTTCEEEES
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc--c-------------cCHHHHHHHHHHHHhCCCEEEeC
Confidence 46999999999999999999998 999999999776320 0 11112222222233457777654
Q ss_pred -EeeeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 139 -HCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 139 -~v~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
.|..++.+.. .+.+.. .+|+ .+.+|.||+|+|..|+..
T Consensus 256 ~~v~~i~~~~~~~~~v~~-~~G~--------~i~~D~vv~a~G~~p~~~ 295 (495)
T 2wpf_A 256 ENPAKVSLNTDGSKHVTF-ESGK--------TLDVDVVMMAIGRIPRTN 295 (495)
T ss_dssp CCEEEEEECTTSCEEEEE-TTSC--------EEEESEEEECSCEEECCG
T ss_pred CEEEEEEEcCCceEEEEE-CCCc--------EEEcCEEEECCCCccccc
Confidence 7888876542 233432 4565 899999999999987764
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.5e-06 Score=79.54 Aligned_cols=35 Identities=31% Similarity=0.314 Sum_probs=32.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+.+||+|||||++|+++|+.|++.|++|+|||+..
T Consensus 5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 45799999999999999999999999999999864
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.15 E-value=7.5e-07 Score=84.34 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=33.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccC------ceEEEEcCCCccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL------YDVVCVSPRNHMV 98 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g------~~v~vie~~~~~~ 98 (351)
++||+|||||++||+||++|++.| ++|+|+|+++...
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~G 47 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVG 47 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCC
Confidence 479999999999999999999999 9999999987653
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=6.7e-06 Score=78.18 Aligned_cols=103 Identities=22% Similarity=0.295 Sum_probs=70.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .+...+...........++.++. ..|
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------~~~~~~~~~l~~~l~~~Gv~v~~~~~v 244 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP---------------AVDEQVAKEAQKILTKQGLKILLGARV 244 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST---------------TSCHHHHHHHHHHHHHTTEEEEETCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc---------------ccCHHHHHHHHHHHHhCCCEEEECCEE
Confidence 47899999999999999999999999999999775321 01111222222233445777765 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.+.+.+.+...+.+. ...+.+|.||+|+|..|+..
T Consensus 245 ~~i~~~~~~~~v~~~~~~g------~~~~~~D~vi~a~G~~p~~~ 283 (476)
T 3lad_A 245 TGTEVKNKQVTVKFVDAEG------EKSQAFDKLIVAVGRRPVTT 283 (476)
T ss_dssp EEEEECSSCEEEEEESSSE------EEEEEESEEEECSCEEECCT
T ss_pred EEEEEcCCEEEEEEEeCCC------cEEEECCEEEEeeCCcccCC
Confidence 8888766555443322110 12789999999999988765
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=3e-06 Score=81.17 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=70.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+.-. +...+...........++.++. ..|
T Consensus 182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~---------------~d~~~~~~l~~~l~~~GV~i~~~~~V 246 (499)
T 1xdi_A 182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY---------------EDADAALVLEESFAERGVRLFKNARA 246 (499)
T ss_dssp CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC---------------SSHHHHHHHHHHHHHTTCEEETTCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc---------------cCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 478999999999999999999999999999997763210 1111222222223344777665 478
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
+.++.+...+.+.. .++. ++.+|.||+|+|..|+..
T Consensus 247 ~~i~~~~~~v~v~~-~~g~--------~i~aD~Vv~a~G~~p~~~ 282 (499)
T 1xdi_A 247 ASVTRTGAGVLVTM-TDGR--------TVEGSHALMTIGSVPNTS 282 (499)
T ss_dssp EEEEECSSSEEEEE-TTSC--------EEEESEEEECCCEEECCS
T ss_pred EEEEEeCCEEEEEE-CCCc--------EEEcCEEEECCCCCcCCC
Confidence 88876655455543 4555 899999999999988764
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.9e-06 Score=79.10 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCC-Ccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR-NHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~-~~~ 97 (351)
..+||+|||||++||+||+.|++.|++|+|+|++ +..
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v 80 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV 80 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence 4579999999999999999999999999999998 654
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-05 Score=76.14 Aligned_cols=91 Identities=22% Similarity=0.371 Sum_probs=69.3
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--------------------C---------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------------------S--------- 281 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~--------------------~--------- 281 (351)
.+|+|||||.+|+-+|..|++.+ .+|+++++..... .
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G--------------~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~ 92 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEG--------------ANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNG 92 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTG
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--------------CCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccCh
Confidence 37999999999999999998866 7888888753110 0
Q ss_pred ----------------------------------C-----cHHHHHHHHHHhhhcCcEEEcCe-EEEEe--CC---eEEe
Q 018704 282 ----------------------------------F-----DDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ---KLIL 316 (351)
Q Consensus 282 ----------------------------------~-----~~~~~~~~~~~l~~~gV~~~~~~-v~~v~--~~---~v~~ 316 (351)
+ ...+.+.+.+.+++.||+++.+. |+++. ++ +|.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~ 172 (447)
T 2i0z_A 93 RFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVIL 172 (447)
T ss_dssp GGGHHHHHHSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHhcCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEE
Confidence 0 02334556667778899999995 88885 33 3677
Q ss_pred cCCcEEeccEEEEecCCCC
Q 018704 317 NDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 317 ~~g~~~~~D~vi~a~G~~p 335 (351)
.+|+++.+|.||+|+|..+
T Consensus 173 ~~G~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 173 QTGEVLETNHVVIAVGGKS 191 (447)
T ss_dssp TTCCEEECSCEEECCCCSS
T ss_pred CCCCEEECCEEEECCCCCc
Confidence 7887799999999999887
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=4.8e-06 Score=80.92 Aligned_cols=99 Identities=15% Similarity=0.227 Sum_probs=67.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+...- . +...+...........++.++. ..+
T Consensus 151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--~-------------~~~~~~~~l~~~l~~~GV~i~~~~~v 215 (565)
T 3ntd_A 151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT--P-------------VDREMAGFAHQAIRDQGVDLRLGTAL 215 (565)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT--T-------------SCHHHHHHHHHHHHHTTCEEEETCCE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch--h-------------cCHHHHHHHHHHHHHCCCEEEeCCeE
Confidence 46899999999999999999999999999999775321 0 0111122222223344677665 467
Q ss_pred eeEeC-------------------CCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC
Q 018704 141 AGIDT-------------------DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 141 ~~i~~-------------------~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
..+.. ....+.+.. .+++ .+.+|.||+|+|..|..
T Consensus 216 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~g~--------~i~~D~vi~a~G~~p~~ 269 (565)
T 3ntd_A 216 SEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTL-SNGE--------LLETDLLIMAIGVRPET 269 (565)
T ss_dssp EEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEE-TTSC--------EEEESEEEECSCEEECC
T ss_pred EEEeccccccccccccccccccccCCCcEEEEE-cCCC--------EEEcCEEEECcCCccch
Confidence 77765 344454433 4565 89999999999988764
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=9.5e-06 Score=78.53 Aligned_cols=92 Identities=20% Similarity=0.239 Sum_probs=71.1
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------CC-------------C------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SS-------------F------ 282 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---------~~-------------~------ 282 (351)
.+|+|||||.+|+.+|..|.+.+ .+|+++++...+ +. +
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G--------------~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~ 87 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQG--------------LTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQ 87 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHH
T ss_pred CCEEEECchHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCccccCCCCCceeCCCchhccccccccccc
Confidence 48999999999999999998766 899999985311 00 0
Q ss_pred ----------cHHHHHHHHHHhhhcCc--EEEcC-eEEEEe--CC----eEEecCCcEEeccEEEEecC--CCCc
Q 018704 283 ----------DDRLRHYATTQLSKSGV--RLVRG-IVKDVD--SQ----KLILNDGTEVPYGLLVWSTG--VGPS 336 (351)
Q Consensus 283 ----------~~~~~~~~~~~l~~~gV--~~~~~-~v~~v~--~~----~v~~~~g~~~~~D~vi~a~G--~~p~ 336 (351)
.+++.+.+.+.+++.++ +++.+ +|++++ ++ .|.+.+|+++.+|.||+|+| ..|.
T Consensus 88 ~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~ 162 (549)
T 4ap3_A 88 EWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN 162 (549)
T ss_dssp HCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC
T ss_pred CCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC
Confidence 13566777777888888 78888 488874 33 68888999999999999999 4444
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.7e-06 Score=80.99 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=34.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~~ 97 (351)
.++||+|||||++||+||+.|++.| .+|+|+|++++.
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~ 42 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 4579999999999999999999999 899999998765
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=9.3e-07 Score=81.95 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=32.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+||+|||||++|+++|+.|++.|++|+|||+...
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~ 38 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTF 38 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 37999999999999999999999999999998754
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4.2e-06 Score=81.81 Aligned_cols=97 Identities=15% Similarity=0.280 Sum_probs=69.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+...-. +...+...........++.++. ..|
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---------------~~~~~~~~l~~~l~~~GV~i~~~~~v 251 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP---------------IDYEMAAYVHEHMKNHDVELVFEDGV 251 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT---------------SCHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc---------------CCHHHHHHHHHHHHHcCCEEEECCeE
Confidence 478999999999999999999999999999987753210 1111222222223345777665 578
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
..++.+...+.+ .+++ ++.+|.||+|+|..|..
T Consensus 252 ~~i~~~~~~v~~---~~g~--------~i~~D~Vi~a~G~~p~~ 284 (588)
T 3ics_A 252 DALEENGAVVRL---KSGS--------VIQTDMLILAIGVQPES 284 (588)
T ss_dssp EEEEGGGTEEEE---TTSC--------EEECSEEEECSCEEECC
T ss_pred EEEecCCCEEEE---CCCC--------EEEcCEEEEccCCCCCh
Confidence 888776566554 4565 89999999999988765
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=3.8e-06 Score=79.02 Aligned_cols=96 Identities=9% Similarity=0.151 Sum_probs=65.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..+++.|.+|+|+++.+.+.- . ....+.+.........++.++. .+|
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~-----~----------~d~~~~~~~~~~l~~~gV~i~~~~~v 211 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINK-----L----------MDADMNQPILDELDKREIPYRLNEEI 211 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCST-----T----------SCGGGGHHHHHHHHHTTCCEEESCCE
T ss_pred CcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccc-----c----------ccchhHHHHHHHhhccceEEEeccEE
Confidence 46899999999999999999999999999999776320 0 0111122222223334665554 366
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.. .+.+ .+++ .+.+|.|++|+|..|+..
T Consensus 212 ~~~~~~--~v~~---~~g~--------~~~~D~vl~a~G~~Pn~~ 243 (437)
T 4eqs_A 212 NAINGN--EITF---KSGK--------VEHYDMIIEGVGTHPNSK 243 (437)
T ss_dssp EEEETT--EEEE---TTSC--------EEECSEEEECCCEEESCG
T ss_pred EEecCC--eeee---cCCe--------EEeeeeEEEEeceecCcH
Confidence 666543 4443 4666 899999999999888654
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-05 Score=76.70 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=68.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~------------------------------ 281 (351)
+|+|||||+.|+.+|..|.+.| .+|+++++.+.+.+
T Consensus 6 DVvVIGgG~aGl~aA~~l~~~G--------------~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~ 71 (466)
T 3l8k_A 6 DVVVIGAGGAGYHGAFRLAKAK--------------YNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVK 71 (466)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred eEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCC
Confidence 7999999999999999999877 89999996542211
Q ss_pred --CcH-H----------HH--HHHHHHhhhcCcEEEcCeEEEEeCCe--EEecCCcE--EeccEEEEecCCCCc
Q 018704 282 --FDD-R----------LR--HYATTQLSKSGVRLVRGIVKDVDSQK--LILNDGTE--VPYGLLVWSTGVGPS 336 (351)
Q Consensus 282 --~~~-~----------~~--~~~~~~l~~~gV~~~~~~v~~v~~~~--v~~~~g~~--~~~D~vi~a~G~~p~ 336 (351)
++. . +. ..+.+.+++.||+++.+++..++.+. |.+.+|++ +.+|.+|+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~ 145 (466)
T 3l8k_A 72 IPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETA 145 (466)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEEC
T ss_pred CCcCHHHHHHHHHhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCcc
Confidence 110 0 01 33444566779999999888888764 44567878 999999999998776
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.13 E-value=1.5e-06 Score=83.67 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=34.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
.+||+|||||++||+||..|++.|++|+|+|++++..
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G 40 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVG 40 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSB
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 4799999999999999999999999999999988753
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-06 Score=84.76 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=34.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMV 98 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~~~ 98 (351)
.+||+|||||++||+||+.|++.| ++|+|+|++++..
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riG 45 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVG 45 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSB
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCC
Confidence 479999999999999999999999 9999999988754
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.1e-06 Score=78.74 Aligned_cols=91 Identities=23% Similarity=0.283 Sum_probs=69.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~------------------------------- 280 (351)
+|+|||||+.|+-+|..|++.| .+|++++++.+-.
T Consensus 7 DVvVIGaG~aGl~aA~~la~~G--------------~~V~liEk~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~ 72 (463)
T 4dna_A 7 DLFVIGGGSGGVRSGRLAAALG--------------KKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGW 72 (463)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTE
T ss_pred cEEEECcCHHHHHHHHHHHhCC--------------CEEEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCc
Confidence 7999999999999999999876 8999999853210
Q ss_pred -----CCcH------------HHHHHHHHHhhhcCcEEEcCeEEEEeCCeEEe-cCCcEEeccEEEEecCCCCc
Q 018704 281 -----SFDD------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL-NDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 281 -----~~~~------------~~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~-~~g~~~~~D~vi~a~G~~p~ 336 (351)
.++. .+...+.+.+++.+|+++.+++..++...+.+ .+++++.+|.+|+|||.+|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~~p~ 146 (463)
T 4dna_A 73 TVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPS 146 (463)
T ss_dssp EECCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCEEEC
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCCCcc
Confidence 0110 12223444566779999999888887788888 57888999999999997665
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.3e-06 Score=81.99 Aligned_cols=92 Identities=14% Similarity=0.303 Sum_probs=64.4
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC---CC--------CCcH-HHHHHHHHHh--hh
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---LS--------SFDD-RLRHYATTQL--SK 296 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---l~--------~~~~-~~~~~~~~~l--~~ 296 (351)
++|+|||||..|+.+|..|.+.+ .+|++|++++. .| .+++ .+...+.+.+ +.
T Consensus 43 prVVIIGgG~AGl~~A~~L~~~~--------------~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~ 108 (502)
T 4g6h_A 43 PNVLILGSGWGAISFLKHIDTKK--------------YNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKK 108 (502)
T ss_dssp CEEEEECSSHHHHHHHHHSCTTT--------------CEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCS
T ss_pred CCEEEECCcHHHHHHHHHhhhCC--------------CcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhc
Confidence 48999999999999998886533 89999999742 11 1111 1111122222 34
Q ss_pred cCcEEEcCeEEEEeC--CeEEe--------------------cCCcEEeccEEEEecCCCCc
Q 018704 297 SGVRLVRGIVKDVDS--QKLIL--------------------NDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 297 ~gV~~~~~~v~~v~~--~~v~~--------------------~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+++++.++|++++. ..|.+ .++.++++|.+|+|||..|+
T Consensus 109 ~~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~ 170 (502)
T 4g6h_A 109 GNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPN 170 (502)
T ss_dssp SCEEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEEC
T ss_pred CCeEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccc
Confidence 589999999988865 34544 24668999999999999887
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-05 Score=71.41 Aligned_cols=91 Identities=20% Similarity=0.192 Sum_probs=68.5
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC----C--------CCC----cHHHHHHHHHHhh
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----L--------SSF----DDRLRHYATTQLS 295 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----l--------~~~----~~~~~~~~~~~l~ 295 (351)
.|+|||||+.|+.+|..+++.+ .+|++++++.+ + +.+ .+++.....+...
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g--------------~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~ 73 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRAN--------------LKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAK 73 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHh
Confidence 7999999999999999999887 89999998532 1 211 2455666666677
Q ss_pred hcCcEEEcCe-EEEEe--CCeEEecCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGI-VKDVD--SQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~--~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.++.+..+. +.... ...+...+++++.+|.+|+|||.+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~ 117 (312)
T 4gcm_A 74 KFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYK 117 (312)
T ss_dssp HTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEEC
T ss_pred hccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccC
Confidence 7788877773 33322 34666778889999999999998876
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.3e-06 Score=83.50 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=34.0
Q ss_pred CCCCcEEEECCchhHHHHHHhhhcc------CceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTS------LYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~------g~~v~vie~~~~~ 97 (351)
.+.+||+|||||+|||++|+.|++. |++|+|||+.+..
T Consensus 33 ~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~ 76 (584)
T 2gmh_A 33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 76 (584)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred ccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCC
Confidence 3458999999999999999999998 9999999987653
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=3.6e-06 Score=79.87 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=68.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+.- . ...+...........++.++. .+|
T Consensus 176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---~-------------~~~~~~~l~~~l~~~Gv~i~~~~~v 239 (467)
T 1zk7_A 176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR---E-------------DPAIGEAVTAAFRAEGIEVLEHTQA 239 (467)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT---S-------------CHHHHHHHHHHHHHTTCEEETTCCE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC---C-------------CHHHHHHHHHHHHhCCCEEEcCCEE
Confidence 47899999999999999999999999999999775320 0 011111222223334677664 477
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.+...+.+.. ++. ++.+|.||+|+|..|...
T Consensus 240 ~~i~~~~~~~~v~~--~~~--------~i~aD~Vv~a~G~~p~~~ 274 (467)
T 1zk7_A 240 SQVAHMDGEFVLTT--THG--------ELRADKLLVATGRTPNTR 274 (467)
T ss_dssp EEEEEETTEEEEEE--TTE--------EEEESEEEECSCEEESCT
T ss_pred EEEEEeCCEEEEEE--CCc--------EEEcCEEEECCCCCcCCC
Confidence 77776655554433 233 799999999999987754
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.3e-06 Score=81.65 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=34.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||+|||||++||+||+.|++.|++|+|+|+.+..
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 46 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP 46 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 4579999999999999999999999999999998765
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=77.90 Aligned_cols=92 Identities=22% Similarity=0.244 Sum_probs=69.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------C---------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S--------------------- 280 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---------~--------------------- 280 (351)
.+|+|||||.+|+.+|..|.+.+ .+|++++++..+ |
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g--------------~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~ 75 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAG--------------MKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIP 75 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSST
T ss_pred CCEEEECccHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCccccc
Confidence 38999999999999999998765 789999986311 0
Q ss_pred --C------CcHHHHHHHHHHhhhcCc--EEEcC-eEEEEeC--C----eEEecCCcEEeccEEEEecC--CCCc
Q 018704 281 --S------FDDRLRHYATTQLSKSGV--RLVRG-IVKDVDS--Q----KLILNDGTEVPYGLLVWSTG--VGPS 336 (351)
Q Consensus 281 --~------~~~~~~~~~~~~l~~~gV--~~~~~-~v~~v~~--~----~v~~~~g~~~~~D~vi~a~G--~~p~ 336 (351)
. ..+++...+.+.+++.++ .++.+ +|.+++- + .|.+.+|+++.+|.||+|+| ..|.
T Consensus 76 ~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~ 150 (545)
T 3uox_A 76 EWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR 150 (545)
T ss_dssp TCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC--
T ss_pred CCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc
Confidence 0 124566777777777787 78888 4877752 3 68888999999999999999 4554
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=77.87 Aligned_cols=89 Identities=15% Similarity=0.240 Sum_probs=69.3
Q ss_pred CeEEEECCChHHHHHHHHHH-HHHHHHHHhhhcCCCCccEEEEEeCCCCC---------CC-------------C-----
Q 018704 231 LHCVVVGGGPTGVEFSGELS-DFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SS-------------F----- 282 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---------~~-------------~----- 282 (351)
.+|+|||||.+|+.+|..|. +.| .+|+++++...+ +. +
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G--------------~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~ 74 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELG--------------LTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLL 74 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC--------------CCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHcCC--------------CCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccc
Confidence 38999999999999999998 655 799999985311 11 0
Q ss_pred -----------cHHHHHHHHHHhhhcCc--EEEcCe-EEEEe--CC----eEEecCCcEEeccEEEEecCC
Q 018704 283 -----------DDRLRHYATTQLSKSGV--RLVRGI-VKDVD--SQ----KLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 283 -----------~~~~~~~~~~~l~~~gV--~~~~~~-v~~v~--~~----~v~~~~g~~~~~D~vi~a~G~ 333 (351)
.+++.+.+.+.+++.|+ +++.+. |++++ ++ .|.+.+|+++.+|.||+|+|.
T Consensus 75 ~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~ 145 (540)
T 3gwf_A 75 QESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGL 145 (540)
T ss_dssp HHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCS
T ss_pred cCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcc
Confidence 13566777777888888 788884 88775 23 678889989999999999995
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=98.10 E-value=3e-06 Score=80.12 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=67.9
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--------CCC--CcHHHHHHHHHHhhhc
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--------LSS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------l~~--~~~~~~~~~~~~l~~~ 297 (351)
...++|+|||||+.|+.+|..|.+.| .+|+++++.+. ++. ++.++.....+.+++.
T Consensus 120 ~~~~~V~IIGgGpAGl~aA~~L~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~ 185 (456)
T 2vdc_G 120 ELGLSVGVIGAGPAGLAAAEELRAKG--------------YEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADA 185 (456)
T ss_dssp SCCCCEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence 35579999999999999999999877 88999999742 232 3456777777888899
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCC
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
||+++.+.... ..+.++++ .+++|.||+|||..
T Consensus 186 gv~~~~~~~v~---~~v~~~~~-~~~~d~vvlAtG~~ 218 (456)
T 2vdc_G 186 GVIYHPNFEVG---RDASLPEL-RRKHVAVLVATGVY 218 (456)
T ss_dssp TCEEETTCCBT---TTBCHHHH-HSSCSEEEECCCCC
T ss_pred CcEEEeCCEec---cEEEhhHh-HhhCCEEEEecCCC
Confidence 99999996321 22334333 36799999999986
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1e-05 Score=76.50 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=67.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--------C----------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------S---------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~--------~---------------------- 281 (351)
+|+|||||++|+-+|..|.+.+.+. .. .+|+++++.+.+. .
T Consensus 32 dVvIIGaG~aGl~aA~~L~~~g~~~--------~~-~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~ 102 (463)
T 3s5w_A 32 DLIGVGFGPSNIALAIALQERAQAQ--------GA-LEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYS 102 (463)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHH--------CC-CCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTS
T ss_pred CEEEECCCHHHHHHHHHHHhccccc--------Cc-ccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCC
Confidence 7999999999999999999876210 00 4799998864110 0
Q ss_pred ----------------------CcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC---------eEEecCCc----EEecc
Q 018704 282 ----------------------FDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ---------KLILNDGT----EVPYG 325 (351)
Q Consensus 282 ----------------------~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~---------~v~~~~g~----~~~~D 325 (351)
...++.+.+....++.+++++.+. |++++.+ .|.+.+|. ++.+|
T Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d 182 (463)
T 3s5w_A 103 FVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTR 182 (463)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEES
T ss_pred hhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeC
Confidence 012333445555666689999995 8887642 45566665 79999
Q ss_pred EEEEecCCCCc
Q 018704 326 LLVWSTGVGPS 336 (351)
Q Consensus 326 ~vi~a~G~~p~ 336 (351)
.||+|||..|.
T Consensus 183 ~lVlAtG~~p~ 193 (463)
T 3s5w_A 183 ALVVSPGGTPR 193 (463)
T ss_dssp EEEECCCCEEC
T ss_pred EEEECCCCCCC
Confidence 99999998776
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=98.09 E-value=7.3e-06 Score=77.99 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=67.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+. + .+...+.+.........++.++. ..+
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~-------------~~d~~~~~~~~~~l~~~gv~i~~~~~v 251 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL--R-------------SFDSMISTNCTEELENAGVEVLKFSQV 251 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC--T-------------TSCHHHHHHHHHHHHHTTCEEETTEEE
T ss_pred CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc--c-------------ccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 4789999999999999999999999999999977632 0 01111222222223344677665 477
Q ss_pred eeEeCCCCE--EEEEeecC--ccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNHV--VHCETVTD--ELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~~--v~~~~~~~--~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..++.+... +.+...+. ++. ....+.+|.||+|+|..|...
T Consensus 252 ~~i~~~~~~~~~~v~~~~~~~g~~----~g~~~~~D~vi~a~G~~p~~~ 296 (478)
T 3dk9_A 252 KEVKKTLSGLEVSMVTAVPGRLPV----MTMIPDVDCLLWAIGRVPNTK 296 (478)
T ss_dssp EEEEECSSSEEEEEEECCTTSCCE----EEEEEEESEEEECSCEEESCT
T ss_pred EEEEEcCCCcEEEEEEccCCCCcc----cceEEEcCEEEEeeccccCCC
Confidence 777754332 44432221 110 002789999999999987765
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-05 Score=76.77 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=69.1
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC-----------------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----------------------------- 281 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~----------------------------- 281 (351)
.+|+|||||..|+.+|..|.+.+ .+|++++++..+.+
T Consensus 44 ~dVvIIGgG~aGl~aA~~l~~~G--------------~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~ 109 (523)
T 1mo9_A 44 YDAIFIGGGAAGRFGSAYLRAMG--------------GRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQ 109 (523)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhc
Confidence 58999999999999999999876 89999999762110
Q ss_pred -----C------cHHHHHHHH-------HHh-----hhcCcEEE-cCeEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 282 -----F------DDRLRHYAT-------TQL-----SKSGVRLV-RGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 282 -----~------~~~~~~~~~-------~~l-----~~~gV~~~-~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+ ...+...+. +.+ ++.||+++ .+++..++...+.+. |.++.+|.+|+|||.+|.
T Consensus 110 g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~-g~~~~~d~lViATGs~p~ 187 (523)
T 1mo9_A 110 YWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAA-GKVFKAKNLILAVGAGPG 187 (523)
T ss_dssp TTCCCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEET-TEEEEBSCEEECCCEECC
T ss_pred CcHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEEC-CEEEEeCEEEECCCCCCC
Confidence 0 111222221 344 67799999 667888887788886 778999999999998877
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=7.3e-06 Score=78.34 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=68.3
Q ss_pred CCcEEEECCchhHHHHHHhhhc----cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
..+|+|||||+.|+.+|..|++ .|.+|+++++.+...-. . +...+...........++.++.
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~---------~-----l~~~~~~~~~~~l~~~GV~v~~ 245 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK---------I-----LPEYLSNWTMEKVRREGVKVMP 245 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT---------T-----SCHHHHHHHHHHHHTTTCEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccc---------c-----CCHHHHHHHHHHHHhcCCEEEe
Confidence 4789999999999999999976 57899999986542100 0 0011122222234455777766
Q ss_pred E-EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 138 ~-~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
. .|+.++.+...+.+. +.+|+ ++.+|.||+|+|..|+..
T Consensus 246 ~~~V~~i~~~~~~~~v~-l~dG~--------~i~aD~Vv~a~G~~pn~~ 285 (493)
T 1m6i_A 246 NAIVQSVGVSSGKLLIK-LKDGR--------KVETDHIVAAVGLEPNVE 285 (493)
T ss_dssp SCCEEEEEEETTEEEEE-ETTSC--------EEEESEEEECCCEEECCT
T ss_pred CCEEEEEEecCCeEEEE-ECCCC--------EEECCEEEECCCCCccHH
Confidence 5 788887655554443 24666 899999999999987754
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=2.1e-05 Score=74.59 Aligned_cols=92 Identities=25% Similarity=0.282 Sum_probs=67.2
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCC----------------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF---------------------------- 282 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~---------------------------- 282 (351)
.+|+|||||..|+.+|..|.+.+ .+|+++++++.+.+.
T Consensus 7 ~dvvIIGaG~aGl~aA~~l~~~g--------------~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~ 72 (470)
T 1dxl_A 7 NDVVIIGGGPGGYVAAIKAAQLG--------------FKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFAN 72 (470)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHT--------------CCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999877 899999997422110
Q ss_pred ----------cH-H-----------HHHHHHHHhhhcCcEEEcCeEEEEeCCeEEe--cCC--cEEeccEEEEecCCCCc
Q 018704 283 ----------DD-R-----------LRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDG--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 283 ----------~~-~-----------~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~--~~g--~~~~~D~vi~a~G~~p~ 336 (351)
+. . +...+.+.+++.||+++.++...++.+.+.+ .+| .++.+|.||+|||.+|.
T Consensus 73 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~ 152 (470)
T 1dxl_A 73 HGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVK 152 (470)
T ss_dssp HTEEESCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEEC
T ss_pred cCcccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCC
Confidence 00 0 1111234566779999999754566666555 466 67999999999998877
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=2.7e-06 Score=80.79 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=33.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
..+||+|||||++||+||+.|++.|++|+|+|+++...
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~G 52 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG 52 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC
Confidence 45799999999999999999999999999999987653
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.05 E-value=3e-06 Score=78.74 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=34.2
Q ss_pred CCcEEEECCchhHHHHHHhhhcc-CceEEEEcCCCccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHMV 98 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~-g~~v~vie~~~~~~ 98 (351)
.+||+|||||++||+||+.|++. |++|+|+|++++..
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~G 44 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIG 44 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence 58999999999999999999998 99999999987653
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=3.2e-06 Score=78.21 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=34.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
..+||+|||||++||++|+.|++.|.+|+|+|++++..
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G 65 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIG 65 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCC
Confidence 45899999999999999999999999999999987653
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.7e-06 Score=81.56 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=33.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+||+|||||++||+||..|++.|++|+|+|+++..
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 40 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV 40 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 479999999999999999999999999999998765
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.9e-05 Score=73.54 Aligned_cols=91 Identities=16% Similarity=0.292 Sum_probs=67.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC---------C---------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---------S--------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~---------~--------------------- 281 (351)
+|+|||||.+|+-+|..|++.| .+|+++++..... .
T Consensus 7 dVvIIGgG~aGl~~A~~La~~G--------------~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~ 72 (421)
T 3nix_A 7 DVLVIGAGPAGTVAASLVNKSG--------------FKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQ 72 (421)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEE
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcc
Confidence 8999999999999999998866 7888888753100 0
Q ss_pred ------------------------------C-cHHHHHHHHHHhhhcCcEEEcC-eEEEEeC--C----eEEecCCc--E
Q 018704 282 ------------------------------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q----KLILNDGT--E 321 (351)
Q Consensus 282 ------------------------------~-~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~----~v~~~~g~--~ 321 (351)
+ ...+.+.+.+.+++.|++++.+ +|+++.. + .+.+.+|+ +
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~ 152 (421)
T 3nix_A 73 KFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKRE 152 (421)
T ss_dssp ECEEEEEETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred cCCcEEEeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEE
Confidence 0 0134455666777789999999 4888763 3 24446787 6
Q ss_pred EeccEEEEecCCCCc
Q 018704 322 VPYGLLVWSTGVGPS 336 (351)
Q Consensus 322 ~~~D~vi~a~G~~p~ 336 (351)
+.+|.||.|+|..+.
T Consensus 153 ~~a~~vV~A~G~~s~ 167 (421)
T 3nix_A 153 IEARFIIDASGYGRV 167 (421)
T ss_dssp EEEEEEEECCGGGCH
T ss_pred EEcCEEEECCCCchh
Confidence 999999999998763
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=98.02 E-value=3.6e-06 Score=80.39 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhcC-cEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCCC
Q 018704 284 DRLRHYATTQLSKSG-VRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 284 ~~~~~~~~~~l~~~g-V~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
..+.+.+.+.+.+.| ++++.++ |++++. + .|.+.+|+++.+|.||+|+|..
T Consensus 255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~ 311 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLN 311 (495)
T ss_dssp HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGG
T ss_pred HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHH
Confidence 367777888888888 9999995 998863 3 4556788889999999999954
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=98.02 E-value=3e-06 Score=78.18 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=32.2
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~ 97 (351)
+||+|||||++||++|..|++. |++|+|+|+.+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 4899999999999999999998 9999999987654
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.02 E-value=3e-05 Score=75.70 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=69.2
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC------------------------C-----
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS------------------------S----- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~------------------------~----- 281 (351)
.|+|||||..|+.+|..+++.| .+|.++++.. .+. .
T Consensus 30 DVIVIGgG~AGl~AAlaLAr~G--------------~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~ 95 (651)
T 3ces_A 30 DVIIIGGGHAGTEAAMAAARMG--------------QQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKA 95 (651)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHH
T ss_pred CEEEECChHHHHHHHHHHHhCC--------------CCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHH
Confidence 8999999999999999999877 8899998752 100 0
Q ss_pred -------------------------Cc-HHHHHHHHHHhhh-cCcEEEcCeEEEEe--CC---eEEecCCcEEeccEEEE
Q 018704 282 -------------------------FD-DRLRHYATTQLSK-SGVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 329 (351)
Q Consensus 282 -------------------------~~-~~~~~~~~~~l~~-~gV~~~~~~v~~v~--~~---~v~~~~g~~~~~D~vi~ 329 (351)
.+ ..+...+.+.+++ .||+++.++|+++. ++ +|.+.+|.++.||.||+
T Consensus 96 ~d~~gi~f~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVL 175 (651)
T 3ces_A 96 IDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVL 175 (651)
T ss_dssp HHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEE
T ss_pred hhhcccchhhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEE
Confidence 00 1244556666777 69999766788884 33 56778888899999999
Q ss_pred ecCCCCc
Q 018704 330 STGVGPS 336 (351)
Q Consensus 330 a~G~~p~ 336 (351)
|+|..+.
T Consensus 176 ATGt~s~ 182 (651)
T 3ces_A 176 TVGTFLD 182 (651)
T ss_dssp CCSTTTC
T ss_pred cCCCCcc
Confidence 9998876
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.4e-06 Score=79.31 Aligned_cols=36 Identities=14% Similarity=0.348 Sum_probs=33.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~ 97 (351)
++||+|||||++||++|++|++.| .+|+|+|+++..
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~ 41 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL 41 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 479999999999999999999999 999999997764
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=97.98 E-value=4.6e-06 Score=79.79 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=33.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||+|||||++||+||+.|++.|++|+|+|+++..
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 48 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 48 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 3579999999999999999999999999999998775
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-05 Score=75.75 Aligned_cols=102 Identities=11% Similarity=0.112 Sum_probs=65.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++...+.. +...+...........++.++.. .+
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~----------------~d~~~~~~l~~~l~~~gv~~~~~~~v 248 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRG----------------FDQQMSSLVTEHMESHGTQFLKGCVP 248 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT----------------SCHHHHHHHHHHHHHTTCEEEETEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccccc----------------CCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 46899999999999999999999999999998542110 11112222222233457776654 67
Q ss_pred eeEeC-CCCEEEE--EeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDT-DNHVVHC--ETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~-~~~~v~~--~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..+.. +...+.+ ....+++ ..++.+|.||+|+|..|...
T Consensus 249 ~~i~~~~~~~~~v~~~~~~~g~------~~~~~~D~vi~a~G~~p~~~ 290 (488)
T 3dgz_A 249 SHIKKLPTNQLQVTWEDHASGK------EDTGTFDTVLWAIGRVPETR 290 (488)
T ss_dssp EEEEECTTSCEEEEEEETTTTE------EEEEEESEEEECSCEEESCG
T ss_pred EEEEEcCCCcEEEEEEeCCCCe------eEEEECCEEEEcccCCcccC
Confidence 77765 2333333 2211232 22578999999999887764
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-05 Score=75.72 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=65.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+++|||||+.|+.+|..|++.|.+|+++++...+.. +...+...........++.++. ..|
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~----------------~d~~~~~~l~~~l~~~Gv~i~~~~~v 250 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRG----------------FDQQMAELVAASMEERGIPFLRKTVP 250 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTT----------------SCHHHHHHHHHHHHHTTCCEEETEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcc----------------cCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 46899999999999999999999999999988432110 0111222222223334666655 477
Q ss_pred eeEeCCCC-E--EEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDTDNH-V--VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~~~~-~--v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..+..+.. . +.+.....++ ...+.+|.||+|+|..|...
T Consensus 251 ~~i~~~~~~~~~v~~~~~~~~~------~~~~~~D~vi~a~G~~p~~~ 292 (483)
T 3dgh_A 251 LSVEKQDDGKLLVKYKNVETGE------ESEDVYDTVLWAIGRKGLVD 292 (483)
T ss_dssp EEEEECTTSCEEEEEEETTTCC------EEEEEESEEEECSCEEECCG
T ss_pred EEEEEcCCCcEEEEEecCCCCc------eeEEEcCEEEECcccccCcC
Confidence 88875432 2 3332211122 23789999999999887654
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.96 E-value=5.3e-06 Score=76.19 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=32.9
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+||+|||||++||++|..|++.|.+|+|+|++++.
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 36 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 68999999999999999999999999999998764
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=97.95 E-value=4e-05 Score=70.93 Aligned_cols=92 Identities=21% Similarity=0.241 Sum_probs=65.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-CC------CcHHHHHHH-------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-SS------FDDRLRHYA------------- 290 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l-~~------~~~~~~~~~------------- 290 (351)
.+|+|||||.+|+-+|..|.+.| .+|+++++.... .. +.+...+.+
T Consensus 6 ~~V~IVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~ 71 (397)
T 2vou_A 6 DRIAVVGGSISGLTAALMLRDAG--------------VDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVP 71 (397)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBC
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCCCccccccccChhHHHHHHHcCCcccccccc
Confidence 38999999999999999999877 899999986321 11 122222221
Q ss_pred ------------------------------HHHhhh--cCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCC
Q 018704 291 ------------------------------TTQLSK--SGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 291 ------------------------------~~~l~~--~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~ 333 (351)
.+.|.+ .|++++.+. |++++. + .+.+.+|+++.+|.||.|.|.
T Consensus 72 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~ 151 (397)
T 2vou_A 72 SSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGG 151 (397)
T ss_dssp CCEEEEEETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCT
T ss_pred ccceEEEecCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCc
Confidence 111211 378899884 888854 2 466788989999999999998
Q ss_pred CCc
Q 018704 334 GPS 336 (351)
Q Consensus 334 ~p~ 336 (351)
...
T Consensus 152 ~S~ 154 (397)
T 2vou_A 152 ASV 154 (397)
T ss_dssp TCH
T ss_pred chh
Confidence 765
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=3.6e-06 Score=87.38 Aligned_cols=92 Identities=17% Similarity=0.321 Sum_probs=69.9
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCCCC--------CC--CcHHHHHHHHHHhhhc
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (351)
..++|+|||||+.|+.+|..|.+.| . +|+++++.+.+ +. ++.+......+.+++.
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G--------------~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~ 251 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLG--------------YSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDL 251 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEECccHHHHHHHHHHHhcC--------------CCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHC
Confidence 4679999999999999999999877 6 69999997432 11 2345566666778889
Q ss_pred CcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCC-CCc
Q 018704 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 336 (351)
Q Consensus 298 gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~-~p~ 336 (351)
||+++.++... ...+.+.++.++.+|.||+|||. +|.
T Consensus 252 gv~~~~~~~v~--~~~v~~~~~~~~~~d~vvlAtGa~~p~ 289 (1025)
T 1gte_A 252 GVKIICGKSLS--ENEITLNTLKEEGYKAAFIGIGLPEPK 289 (1025)
T ss_dssp TCEEEESCCBS--TTSBCHHHHHHTTCCEEEECCCCCEEC
T ss_pred CcEEEcccEec--cceEEhhhcCccCCCEEEEecCCCCCC
Confidence 99999996321 13455666666889999999998 466
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=6.2e-06 Score=78.81 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=34.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
..+||+|||||++||++|..|++.|.+|+|+|+++...
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~g 69 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG 69 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC
Confidence 35799999999999999999999999999999987653
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=3.7e-06 Score=76.55 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=30.9
Q ss_pred CcEEEECCchhHHHHHHhhhccC------ceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSL------YDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g------~~v~vie~~~ 95 (351)
+||+|||||++|+++|+.|++.| .+|+|+|++.
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 48999999999999999999998 8999999875
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.4e-05 Score=75.21 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=62.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++...+. . +...+.+.........++.++.. .+
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~------~----------~d~~~~~~~~~~l~~~GV~v~~~~~v 273 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR------G----------FDQDMANKIGEHMEEHGIKFIRQFVP 273 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST------T----------SCHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccc------c----------CCHHHHHHHHHHHHHCCCEEEeCCeE
Confidence 3579999999999999999999999999999842211 0 01112222222233456776653 33
Q ss_pred eeEeC---C-CCEEEEEe-ecCccccCCCceeEeeccEEEEecCCCcCCCC
Q 018704 141 AGIDT---D-NHVVHCET-VTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (351)
Q Consensus 141 ~~i~~---~-~~~v~~~~-~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~ 186 (351)
..+.. . ...+.+.. ..++. ....+.+|.||+|+|..|+...
T Consensus 274 ~~v~~~~~~~~~~~~v~~~~~~g~-----~~~~~~~D~vi~a~G~~p~~~~ 319 (519)
T 3qfa_A 274 IKVEQIEAGTPGRLRVVAQSTNSE-----EIIEGEYNTVMLAIGRDACTRK 319 (519)
T ss_dssp EEEEEEECCTTCEEEEEEEESSSS-----CEEEEEESEEEECSCEEESCSS
T ss_pred EEEEEccCCCCceEEEEEEECCCc-----EEEEEECCEEEEecCCcccCCC
Confidence 44432 1 13333321 12231 0136789999999999887653
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=4.2e-06 Score=80.35 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=30.7
Q ss_pred CCcEEEECCchhHHHHHHhhhc---cCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~ 95 (351)
.+||||||||++|+++|..|++ .|++|+|||+..
T Consensus 2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~ 38 (511)
T 2weu_A 2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN 38 (511)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence 4799999999999999999999 999999999865
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=7.3e-06 Score=75.72 Aligned_cols=37 Identities=16% Similarity=0.449 Sum_probs=34.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
.+||+|||||++||++|..|++.|++|+|+|++++..
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G 39 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG 39 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence 3799999999999999999999999999999987653
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=5.6e-06 Score=79.31 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=32.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+||+|||||++|+++|+.|+++|++|+|+|+++
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~ 36 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD 36 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4799999999999999999999999999999864
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=6.7e-05 Score=72.97 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=68.5
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC------------------------C-----
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS------------------------S----- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~------------------------~----- 281 (351)
.|+|||||..|+++|..+++.| .+|.++++.. .+. .
T Consensus 29 DVIVIGgG~AGl~AAlalAr~G--------------~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~ 94 (637)
T 2zxi_A 29 DVVVIGGGHAGIEAALAAARMG--------------AKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKA 94 (637)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHH
Confidence 7999999999999999999877 8888888752 100 0
Q ss_pred -------------------------Cc-HHHHHHHHHHhhh-cCcEEEcCeEEEEe--CC---eEEecCCcEEeccEEEE
Q 018704 282 -------------------------FD-DRLRHYATTQLSK-SGVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 329 (351)
Q Consensus 282 -------------------------~~-~~~~~~~~~~l~~-~gV~~~~~~v~~v~--~~---~v~~~~g~~~~~D~vi~ 329 (351)
.+ ..+...+.+.+++ .||+++.++|+++. ++ +|.+.+|.++.||.||+
T Consensus 95 ~d~~gi~f~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVL 174 (637)
T 2zxi_A 95 IDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVV 174 (637)
T ss_dssp HHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEE
T ss_pred hhhcccceeecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEE
Confidence 00 1234455666776 59999766788874 33 47788898999999999
Q ss_pred ecCCCCc
Q 018704 330 STGVGPS 336 (351)
Q Consensus 330 a~G~~p~ 336 (351)
|+|..++
T Consensus 175 ATG~~s~ 181 (637)
T 2zxi_A 175 TTGTFLN 181 (637)
T ss_dssp CCTTCBT
T ss_pred ccCCCcc
Confidence 9998766
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=97.91 E-value=5.1e-05 Score=74.01 Aligned_cols=91 Identities=19% Similarity=0.280 Sum_probs=68.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC------CC-----------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL------SS----------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l------~~----------------------- 281 (351)
.|+|||||..|+++|..+++.| .+|.++++.. .+ +.
T Consensus 23 DVIVIGgG~AGl~AAlaLAr~G--------------~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~ 88 (641)
T 3cp8_A 23 DVIVVGAGHAGCEAALAVARGG--------------LHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKA 88 (641)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHH
T ss_pred CEEEECccHHHHHHHHHHHHCC--------------CcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHH
Confidence 8999999999999999999877 8888888752 11 00
Q ss_pred -------------------------Cc-HHHHHHHHHHhhh-cCcEEEcCeEEEEe--CC---eEEecCCcEEeccEEEE
Q 018704 282 -------------------------FD-DRLRHYATTQLSK-SGVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 329 (351)
Q Consensus 282 -------------------------~~-~~~~~~~~~~l~~-~gV~~~~~~v~~v~--~~---~v~~~~g~~~~~D~vi~ 329 (351)
.+ ..+...+.+.+++ .||+++.++|+++. ++ +|.+.+|.++.||.||+
T Consensus 89 ~d~~gi~f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVL 168 (641)
T 3cp8_A 89 IDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAAIL 168 (641)
T ss_dssp HHHHEEEEEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCEEEEEEEEE
T ss_pred HHhcCCchhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeCEEEE
Confidence 01 1334455666766 49999877788764 34 36778898999999999
Q ss_pred ecCCCCc
Q 018704 330 STGVGPS 336 (351)
Q Consensus 330 a~G~~p~ 336 (351)
|+|..++
T Consensus 169 ATG~~s~ 175 (641)
T 3cp8_A 169 ACGTFLN 175 (641)
T ss_dssp CCTTCBT
T ss_pred CcCCCCC
Confidence 9998876
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=97.91 E-value=6.5e-05 Score=69.34 Aligned_cols=91 Identities=13% Similarity=0.226 Sum_probs=68.5
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------CC-------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------LS------------------------- 280 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------l~------------------------- 280 (351)
+|+|||||.+|+-+|..|++.| .+|+++++... ..
T Consensus 4 dV~IvGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~ 69 (394)
T 1k0i_A 4 QVAIIGAGPSGLLLGQLLHKAG--------------IDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDG 69 (394)
T ss_dssp SEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHC
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcC
Confidence 7999999999999999999877 77888877531 00
Q ss_pred ------------------------C-----Cc-HHHHHHHHHHhhhcCcEEEcCe-EEEEeCC-----eEEe-cCCc--E
Q 018704 281 ------------------------S-----FD-DRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLIL-NDGT--E 321 (351)
Q Consensus 281 ------------------------~-----~~-~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~-----~v~~-~~g~--~ 321 (351)
. ++ ..+.+.+.+.+.+.|++++.+. |++++.+ .|.+ .+|+ +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~ 149 (394)
T 1k0i_A 70 LVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR 149 (394)
T ss_dssp EEESCEEEEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEE
T ss_pred CccceEEEEECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEE
Confidence 0 01 2344556666777799999994 8888642 4666 6887 6
Q ss_pred EeccEEEEecCCCCc
Q 018704 322 VPYGLLVWSTGVGPS 336 (351)
Q Consensus 322 ~~~D~vi~a~G~~p~ 336 (351)
+.+|.||.|.|....
T Consensus 150 ~~a~~vV~AdG~~S~ 164 (394)
T 1k0i_A 150 LDCDYIAGCDGFHGI 164 (394)
T ss_dssp EECSEEEECCCTTCS
T ss_pred EEeCEEEECCCCCcH
Confidence 999999999998766
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=97.91 E-value=8e-06 Score=79.15 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhc-CcEEEcCeEEEEeC--C----eEEecCCcEEeccEEEEecCCCCc
Q 018704 284 DRLRHYATTQLSKS-GVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 284 ~~~~~~~~~~l~~~-gV~~~~~~v~~v~~--~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..+.+.+.+.+++. ||+++.++|+++.. + +|.+.+|+++.+|.||.|+|....
T Consensus 194 ~~l~~~L~~~~~~~~Gv~i~~~~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~ 253 (550)
T 2e4g_A 194 HLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL 253 (550)
T ss_dssp HHHHHHHHHHHHHHSCCEEEECCEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence 35677777778777 89998888777752 2 466677878899999999997665
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.2e-05 Score=79.45 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=32.6
Q ss_pred CCcEEEECCchhHHHHHHhhhc-cCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie~~~~ 96 (351)
.+||+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~ 67 (639)
T 2dkh_A 32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEG 67 (639)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 4799999999999999999999 9999999998754
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=9.1e-06 Score=74.16 Aligned_cols=33 Identities=27% Similarity=0.195 Sum_probs=31.4
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+||+|||||+||+.||+.|++.|.+|+|+|+++
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 689999999999999999999999999999765
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0001 Score=71.93 Aligned_cols=92 Identities=21% Similarity=0.325 Sum_probs=69.3
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC------------------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------ 280 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~------------------------------ 280 (351)
.+|+|||||.+|+-+|..|++.| .+|+++++.....
T Consensus 24 ~DVvIVGgG~AGl~aA~~Lar~G--------------~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~ 89 (591)
T 3i3l_A 24 SKVAIIGGGPAGSVAGLTLHKLG--------------HDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYV 89 (591)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCE
T ss_pred CCEEEECcCHHHHHHHHHHHcCC--------------CCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCc
Confidence 48999999999999999999876 7788887752100
Q ss_pred ----------------------------------CCc-HHHHHHHHHHhhhcCcEEEcC-eEEEEeCC-----eEEec-C
Q 018704 281 ----------------------------------SFD-DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILN-D 318 (351)
Q Consensus 281 ----------------------------------~~~-~~~~~~~~~~l~~~gV~~~~~-~v~~v~~~-----~v~~~-~ 318 (351)
.++ ..+...+.+.+++.||+++.+ +|+++..+ +|.+. +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~ 169 (591)
T 3i3l_A 90 KKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRG 169 (591)
T ss_dssp EECEEEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEET
T ss_pred ccCCcEEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecC
Confidence 001 234556677778889999999 59988642 46666 6
Q ss_pred C--cEEeccEEEEecCCCCc
Q 018704 319 G--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 319 g--~~~~~D~vi~a~G~~p~ 336 (351)
| .++.+|.||.|+|....
T Consensus 170 G~~~~i~AdlVV~AdG~~S~ 189 (591)
T 3i3l_A 170 GESVTVESDFVIDAGGSGGP 189 (591)
T ss_dssp TEEEEEEESEEEECCGGGCH
T ss_pred CceEEEEcCEEEECCCCcch
Confidence 7 57999999999998764
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=8.8e-06 Score=76.93 Aligned_cols=93 Identities=12% Similarity=0.138 Sum_probs=66.3
Q ss_pred CeEEEECCChHHHHHHHHHHH-HHHHHHHhhhcCCCCccEEEEEeCCCCC---------CC--CcHHHHHHHHHHhhhcC
Q 018704 231 LHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEANEIL---------SS--FDDRLRHYATTQLSKSG 298 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~l---------~~--~~~~~~~~~~~~l~~~g 298 (351)
++|+|||||+.|+.+|..|.+ ... ....+.+|+++++.+.. +. ...++...+.+.+++.+
T Consensus 4 ~~VvIIG~G~aGl~aA~~L~~~~~~--------~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~ 75 (456)
T 1lqt_A 4 YYIAIVGSGPSAFFAAASLLKAADT--------TEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPR 75 (456)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHH--------STTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhhCcc--------ccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCC
Confidence 489999999999999999987 520 00013899999997422 11 22456677777888889
Q ss_pred cEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCCC
Q 018704 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 299 V~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p 335 (351)
|+++.+. .+ +..|.+.++ ++.+|.||+|||..+
T Consensus 76 v~~~~~v--~v-~~~v~~~~~-~~~~d~lViAtG~~~ 108 (456)
T 1lqt_A 76 FRFFGNV--VV-GEHVQPGEL-SERYDAVIYAVGAQS 108 (456)
T ss_dssp EEEEESC--CB-TTTBCHHHH-HHHSSEEEECCCCCE
T ss_pred CEEEeeE--EE-CCEEEECCC-eEeCCEEEEeeCCCC
Confidence 9999883 12 334555555 478999999999973
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=9.2e-06 Score=77.43 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=33.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~~ 97 (351)
+.+||+|||||++||++|+.|++.| .+|+|+|+++..
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~ 45 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP 45 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 4589999999999999999999998 799999998765
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.86 E-value=8.7e-06 Score=78.44 Aligned_cols=34 Identities=12% Similarity=0.275 Sum_probs=31.7
Q ss_pred CCcEEEECCchhHHHHHHhhhc------------cCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT------------SLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~------------~g~~v~vie~~~ 95 (351)
.+||||||||+||+++|..|++ .|++|+|||+..
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~ 52 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD 52 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence 4799999999999999999999 899999999764
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=4.7e-06 Score=78.55 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=31.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccC-ceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~ 94 (351)
..+||+|||||++|+++|+.|++.| .+|+|||++
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~ 56 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG 56 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccC
Confidence 3479999999999999999999999 999999993
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.5e-05 Score=75.34 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=65.8
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------CCC--cHHHHHHHHHHhhhcCc
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SSF--DDRLRHYATTQLSKSGV 299 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---------~~~--~~~~~~~~~~~l~~~gV 299 (351)
++|+|||||+.|+.+|..|.+.+ ++.+|+++++.+.+ +.+ ..++...+.+.+++.||
T Consensus 7 ~~vvIIG~G~aGl~aA~~l~~~g------------~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv 74 (460)
T 1cjc_A 7 PQICVVGSGPAGFYTAQHLLKHH------------SRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRC 74 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC------------SSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTE
T ss_pred ceEEEECcCHHHHHHHHHHHhcC------------CCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCc
Confidence 59999999999999999998753 23789999987422 222 23566677788888999
Q ss_pred EEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCC
Q 018704 300 RLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 300 ~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p 335 (351)
+++.+. + ...|.+.+ .++.+|.||+|||..|
T Consensus 75 ~~~~~~~v----~~~V~~~~-~~~~~d~lVlAtGs~~ 106 (460)
T 1cjc_A 75 AFYGNVEV----GRDVTVQE-LQDAYHAVVLSYGAED 106 (460)
T ss_dssp EEEBSCCB----TTTBCHHH-HHHHSSEEEECCCCCE
T ss_pred EEEeeeEE----eeEEEecc-ceEEcCEEEEecCcCC
Confidence 999985 4 22344444 3478999999999885
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.81 E-value=1.5e-05 Score=74.83 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEe--CCeE--EecCCcEEeccEEEEecCCCCc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~--~~~v--~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..+.+.+.+.+++.|+++++++ |+++. ++++ +..+|+++.||.||+|+|..+.
T Consensus 234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence 4778888888888999999995 87774 3433 2357888999999999998875
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0001 Score=71.21 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=65.2
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------CC-------------Cc------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SS-------------FD------ 283 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---------~~-------------~~------ 283 (351)
+|+|||||.+|+-+|..|.+.| .+|+++++...+ +. +.
T Consensus 18 dVvIIGaG~aGl~aA~~L~~~G--------------~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~ 83 (542)
T 1w4x_A 18 DVLVVGAGFSGLYALYRLRELG--------------RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQE 83 (542)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHH
T ss_pred CEEEECccHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhc
Confidence 8999999999999999999876 889999985311 10 01
Q ss_pred ----------HHHHHHHHHHhhhcC--cEEEcCe-EEEEeC--C----eEEecCCcEEeccEEEEecCCC
Q 018704 284 ----------DRLRHYATTQLSKSG--VRLVRGI-VKDVDS--Q----KLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 284 ----------~~~~~~~~~~l~~~g--V~~~~~~-v~~v~~--~----~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
+++.+.+.+.+++.+ +.++.+. |.+++. + .|.+.+|+++.+|.||+|+|..
T Consensus 84 ~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~ 153 (542)
T 1w4x_A 84 WNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL 153 (542)
T ss_dssp CCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred cCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence 234445555555554 5688884 887752 2 5777889889999999999964
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00039 Score=65.60 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=31.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.++|+|+|+|-.|.+.|..|.+.|++|++||+++
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 3689999999999999999999999999999764
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=9.5e-05 Score=71.91 Aligned_cols=51 Identities=12% Similarity=0.009 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhcCcEEEcCe-EEEEeC---C---eEEec--CCc--EEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKSGVRLVRGI-VKDVDS---Q---KLILN--DGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~~-v~~v~~---~---~v~~~--~g~--~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+++.||+++.+. |+++.. + +|++. +|+ ++.+|.||+|+|....
T Consensus 257 l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~ 318 (571)
T 1y0p_A 257 VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK 318 (571)
T ss_dssp HHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred HHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence 44556666778899999995 888752 2 25554 675 6889999999997654
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00014 Score=67.35 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=65.2
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC------Cc---------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FD--------------------- 283 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~------~~--------------------- 283 (351)
.+|+|||||.+|+-+|..|++.| .+|+++++...... +.
T Consensus 24 ~dV~IVGaG~aGl~~A~~La~~G--------------~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~ 89 (407)
T 3rp8_A 24 MKAIVIGAGIGGLSAAVALKQSG--------------IDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGG 89 (407)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcC
Confidence 58999999999999999999876 78888887532100 00
Q ss_pred -------------------------------------HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcE
Q 018704 284 -------------------------------------DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTE 321 (351)
Q Consensus 284 -------------------------------------~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~ 321 (351)
..+.+.+.+.+.+ ++++.+. |++++. + .+.+.+|++
T Consensus 90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~ 167 (407)
T 3rp8_A 90 PLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSS 167 (407)
T ss_dssp CCCEEEEEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCE
T ss_pred CCcceEEEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCE
Confidence 1233344444444 7888884 888754 3 466788999
Q ss_pred EeccEEEEecCCCCc
Q 018704 322 VPYGLLVWSTGVGPS 336 (351)
Q Consensus 322 ~~~D~vi~a~G~~p~ 336 (351)
+.+|.||.|.|....
T Consensus 168 ~~a~~vV~AdG~~S~ 182 (407)
T 3rp8_A 168 ASGDLLIAADGSHSA 182 (407)
T ss_dssp EEESEEEECCCTTCS
T ss_pred EeeCEEEECCCcChH
Confidence 999999999998765
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.2e-05 Score=77.70 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=32.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||||||||+|||++|+.|++ |.+|+|||+.+.
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~ 41 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV 41 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence 34799999999999999999999 999999998764
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.3e-05 Score=78.06 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=32.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+||+|||||++|+++|+.|+++|++|+|||+++
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~ 65 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD 65 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4899999999999999999999999999999875
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=8.4e-06 Score=79.55 Aligned_cols=35 Identities=29% Similarity=0.205 Sum_probs=32.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+||||||||+|||+||+.|++.|.+|+|||+...
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~ 41 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFP 41 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47999999999999999999999999999998754
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.76 E-value=4.9e-05 Score=70.58 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhcCcEEEcCe-EE---------EEeC--C--eEEecCCcEEeccEEEEecCCCCccccc-cCCCC
Q 018704 286 LRHYATTQLSKSGVRLVRGI-VK---------DVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVK-SLDLP 345 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~~-v~---------~v~~--~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~-~~gl~ 345 (351)
+...+.+.+++.|++++.+. |+ ++.. + .|.+.+| ++.||.||+|+|.....++. .+|+.
T Consensus 174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g~~ 247 (405)
T 3c4n_A 174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAGPALVEQGLGLH 247 (405)
T ss_dssp HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccHHHHHHHhcCCC
Confidence 44556667778899999984 88 7753 2 2444455 79999999999988755555 54543
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00024 Score=68.50 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=38.2
Q ss_pred HHHHHHhhhcCcEEEcCeEEEEeC--C----eEEecCCcEEeccEEEEecCCCCc
Q 018704 288 HYATTQLSKSGVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 288 ~~~~~~l~~~gV~~~~~~v~~v~~--~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+++.||+++.++|+++.. + .|.+.+|+++.+|.||.|+|.+..
T Consensus 169 ~~L~~~a~~~gv~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~ 223 (538)
T 2aqj_A 169 DFLKRWAVERGVNRVVDEVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL 223 (538)
T ss_dssp HHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred HHHHHHHHHCCCEEEEeeEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence 344555667899999998888753 2 467788888999999999998765
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.75 E-value=2.4e-05 Score=77.50 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=34.8
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
...++|+|||||++||++|+.|++.|++|+|+|+.+..
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~ 142 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 142 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45689999999999999999999999999999998764
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00014 Score=70.68 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhcCcEEEcCe-EEEEe--C-C---eEEec--CCc--EEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKSGVRLVRGI-VKDVD--S-Q---KLILN--DGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~~-v~~v~--~-~---~v~~~--~g~--~~~~D~vi~a~G~~p~ 336 (351)
+...+.+.+++.||+++.+. |+++. + + +|++. +|+ ++.+|.||+|+|-...
T Consensus 252 l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 252 IIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp HHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 34555666778899999995 88875 2 2 35554 675 5889999999997654
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.7e-05 Score=74.86 Aligned_cols=51 Identities=10% Similarity=0.002 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC---C---eEEecCCcEEeccEEEEecCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS---Q---KLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~---~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
.++.+.+.+.+++.|++++.++ |+++.. + +|++.+|++++||.||.++|+.
T Consensus 256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 4788899999999999999995 988753 2 5778889899999999999998
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=1.9e-05 Score=77.97 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=32.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+||||||||.|||+||+.|++.|.+|+|||+...
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~ 39 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPV 39 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCG
T ss_pred cccEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 47999999999999999999999999999998654
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.73 E-value=6.4e-05 Score=74.84 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=65.7
Q ss_pred CCcEEEEC--CchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-E
Q 018704 62 KPRVVVLG--SGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (351)
Q Consensus 62 ~~~VvIIG--~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (351)
..+|+||| +|+.|+.+|..|++.|.+|+++++.+.+.-. .........+ .......++.++. .
T Consensus 523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~----------~~~~~~~~~l----~~~l~~~GV~i~~~~ 588 (690)
T 3k30_A 523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSW----------TNNTFEVNRI----QRRLIENGVARVTDH 588 (690)
T ss_dssp SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGG----------GGGGTCHHHH----HHHHHHTTCEEEESE
T ss_pred CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccc----------cccchhHHHH----HHHHHHCCCEEEcCc
Confidence 46799999 9999999999999999999999987753210 0000011111 1122334777665 4
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCC
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
+|+.++.+...+......++ .++.+|.||+|+|..|..
T Consensus 589 ~V~~i~~~~~~v~~~~~~~~--------~~i~aD~VV~A~G~~p~~ 626 (690)
T 3k30_A 589 AVVAVGAGGVTVRDTYASIE--------RELECDAVVMVTARLPRE 626 (690)
T ss_dssp EEEEEETTEEEEEETTTCCE--------EEEECSEEEEESCEEECC
T ss_pred EEEEEECCeEEEEEccCCeE--------EEEECCEEEECCCCCCCh
Confidence 78888865433332111123 379999999999987654
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=97.73 E-value=1.5e-05 Score=78.20 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=31.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+||||||||+|||+||+.|++.|.+|+|||+..
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~ 51 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLF 51 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 4799999999999999999999999999999864
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00015 Score=67.06 Aligned_cols=90 Identities=17% Similarity=0.291 Sum_probs=62.5
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC------C--C-c---H--------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------S--F-D---D-------------- 284 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~------~--~-~---~-------------- 284 (351)
.+|+|||||.+|+-+|..|.+.| .+|+++++..... . + + .
T Consensus 27 ~dV~IVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~ 92 (398)
T 2xdo_A 27 KNVAIIGGGPVGLTMAKLLQQNG--------------IDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYD 92 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHH
Confidence 38999999999999999999876 8999999863110 0 0 0 0
Q ss_pred ------------------------------------HHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEe
Q 018704 285 ------------------------------------RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVP 323 (351)
Q Consensus 285 ------------------------------------~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~ 323 (351)
.+.+.+.+.+. +++++.+. |++++. + .|++.+|+++.
T Consensus 93 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ 170 (398)
T 2xdo_A 93 LALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLE--NDTVIWDRKLVMLEPGKKKWTLTFENKPSET 170 (398)
T ss_dssp HCBCCCEEEECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSC--TTSEEESCCEEEEEECSSSEEEEETTSCCEE
T ss_pred hhcccceEEECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcC--CCEEEECCEEEEEEECCCEEEEEECCCcEEe
Confidence 01111111111 35677884 888864 2 46678898899
Q ss_pred ccEEEEecCCCCc
Q 018704 324 YGLLVWSTGVGPS 336 (351)
Q Consensus 324 ~D~vi~a~G~~p~ 336 (351)
+|.||.|.|....
T Consensus 171 ad~vV~AdG~~S~ 183 (398)
T 2xdo_A 171 ADLVILANGGMSK 183 (398)
T ss_dssp ESEEEECSCTTCS
T ss_pred cCEEEECCCcchh
Confidence 9999999998765
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.6e-05 Score=78.75 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=32.3
Q ss_pred CCcEEEECCchhHHHHHHhhhc-----cCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT-----SLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~-----~g~~v~vie~~~~ 96 (351)
.+||+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence 4799999999999999999999 9999999997654
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.71 E-value=2.9e-05 Score=78.57 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=34.7
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
...++|+|||||++||+||+.|++.|++|+|+|+.+..
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~ 313 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 313 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcC
Confidence 44679999999999999999999999999999998764
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=70.69 Aligned_cols=91 Identities=23% Similarity=0.310 Sum_probs=69.1
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~------------------------------- 280 (351)
.|+|||||.+|+-+|..|++.| .+|+++++.....
T Consensus 51 DVvIVGaG~aGL~~A~~La~~G--------------~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~ 116 (570)
T 3fmw_A 51 DVVVVGGGPVGLMLAGELRAGG--------------VGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQV 116 (570)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--------------CCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCB
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcc
Confidence 8999999999999999999876 7888888642100
Q ss_pred ------------C---------------C-cHHHHHHHHHHhhhcCcEEEcC-eEEEEeCC----eEEe--cCC-cEEec
Q 018704 281 ------------S---------------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLIL--NDG-TEVPY 324 (351)
Q Consensus 281 ------------~---------------~-~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~~----~v~~--~~g-~~~~~ 324 (351)
. + ...+.+.+.+.+++.|++++.+ +|++++.+ .|++ .+| .++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a 196 (570)
T 3fmw_A 117 AKGLPFAGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRA 196 (570)
T ss_dssp CSBCCBTTBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEE
T ss_pred cCCceeCCcccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEe
Confidence 0 0 1234566677777789999999 49988653 3455 577 68999
Q ss_pred cEEEEecCCCCc
Q 018704 325 GLLVWSTGVGPS 336 (351)
Q Consensus 325 D~vi~a~G~~p~ 336 (351)
|.||.|.|.+..
T Consensus 197 ~~vV~ADG~~S~ 208 (570)
T 3fmw_A 197 RYGVGCDGGRST 208 (570)
T ss_dssp SEEEECSCSSCH
T ss_pred CEEEEcCCCCch
Confidence 999999998764
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00018 Score=66.37 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhcCcEEEcCe-EEEEeC--CeE--EecCCcEEeccEEEEecCCCCccccccCC
Q 018704 286 LRHYATTQLSKSGVRLVRGI-VKDVDS--QKL--ILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v--~~~~g~~~~~D~vi~a~G~~p~~~~~~~g 343 (351)
+...+.+.+++.|++++.++ |+++.. +++ .+.+| ++.+|.||+|+|.+...+++.+|
T Consensus 155 ~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~g 216 (397)
T 2oln_A 155 TLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYTNDLLEPLG 216 (397)
T ss_dssp HHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGHHHHHGGGT
T ss_pred HHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcChHHHhhhcC
Confidence 33445566677899999984 888753 344 33444 79999999999987665555555
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=9.6e-05 Score=66.85 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=29.3
Q ss_pred cCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCC
Q 018704 297 SGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~ 333 (351)
.|+++++++ |++++. + .|.+.+|+++.+|.||+|++.
T Consensus 122 ~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~ 163 (342)
T 3qj4_A 122 SGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPV 163 (342)
T ss_dssp HTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCH
T ss_pred cCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCH
Confidence 389999995 988864 3 456678877899999999973
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=7.8e-05 Score=72.95 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=61.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++...+. . +...+...........++.++.. .+
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~------~----------~d~~~~~~~~~~l~~~gv~i~~~~~v 349 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRSILLR------G----------FDQQMAEKVGDYMENHGVKFAKLCVP 349 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST------T----------SCHHHHHHHHHHHHHTTCEEEETEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCcCcC------c----------CCHHHHHHHHHHHHhCCCEEEECCeE
Confidence 3589999999999999999999999999999862111 0 00111111111223346666543 34
Q ss_pred eeEeC---------CCCEEEEEe-ecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 141 AGIDT---------DNHVVHCET-VTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 141 ~~i~~---------~~~~v~~~~-~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
..+.. ....+.+.. ..+++ ...+.+|.||+|+|..|+..
T Consensus 350 ~~v~~~~~~~~~~~~~~~~~v~~~~~~g~------~~~~~~D~vi~a~G~~p~~~ 398 (598)
T 2x8g_A 350 DEIKQLKVVDTENNKPGLLLVKGHYTDGK------KFEEEFETVIFAVGREPQLS 398 (598)
T ss_dssp EEEEEEECCBTTTTBCCEEEEEEEETTSC------EEEEEESEEEECSCEEECGG
T ss_pred EEEEeccccccccCCCceEEEEEEeCCCc------EEeccCCEEEEEeCCccccC
Confidence 44421 113343321 23444 12345999999999987753
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=7e-05 Score=70.63 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=66.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC------CC------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------SS------------------------ 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l------~~------------------------ 281 (351)
+|+|||||.+|+-+|..|++.| .+|+++++.... ..
T Consensus 8 dVvIVGaG~aGl~aA~~La~~G--------------~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~ 73 (453)
T 3atr_A 8 DVLIIGGGFAGSSAAYQLSRRG--------------LKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENK 73 (453)
T ss_dssp SEEEECCSHHHHHHHHHHSSSS--------------CCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhh
Confidence 7999999999999999998765 677777764210 00
Q ss_pred -----------------------Cc-HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce---EEec---CCc--EEeccE
Q 018704 282 -----------------------FD-DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK---LILN---DGT--EVPYGL 326 (351)
Q Consensus 282 -----------------------~~-~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~---v~~~---~g~--~~~~D~ 326 (351)
++ ..+.+.+.+.+.+.|++++.+. |+++.. ++ |++. +|+ ++.+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~ 153 (453)
T 3atr_A 74 INGIKLYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKV 153 (453)
T ss_dssp EEEEEEECTTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSE
T ss_pred hcceEEECCCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCE
Confidence 00 2355666777778899999995 888753 33 4454 676 789999
Q ss_pred EEEecCCCCc
Q 018704 327 LVWSTGVGPS 336 (351)
Q Consensus 327 vi~a~G~~p~ 336 (351)
||.|+|..+.
T Consensus 154 VV~AdG~~s~ 163 (453)
T 3atr_A 154 VVEATGYSRS 163 (453)
T ss_dssp EEECCGGGCT
T ss_pred EEECcCCchh
Confidence 9999998765
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00028 Score=65.03 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=29.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
+|+|||||++|+-+|..|.+.| .+|+++++..
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G--------------~~v~v~Er~~ 34 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHG--------------IKVTIYERNS 34 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSC
T ss_pred EEEEECcCHHHHHHHHHHHhCC--------------CCEEEEecCC
Confidence 8999999999999999999887 8999999853
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=2.5e-05 Score=78.41 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=34.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+||+|||||++||++|..|++.|++|+|+|+.+..
T Consensus 335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 371 (776)
T 4gut_A 335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRI 371 (776)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccce
Confidence 4589999999999999999999999999999987764
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=2.5e-05 Score=75.60 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=33.5
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+..+|+||||||++|+.+|.+|++.|++|+|+|+...
T Consensus 5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~ 41 (546)
T 1kdg_A 5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 41 (546)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3458999999999999999999999999999998764
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2.9e-05 Score=76.57 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=32.5
Q ss_pred CCCcEEEECCchhHHHHHHhhh---c-cCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGID---T-SLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~---~-~g~~v~vie~~~~ 96 (351)
..+||||||||+|||+||+.|+ + .|.+|+|||+...
T Consensus 21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~ 60 (643)
T 1jnr_A 21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 60 (643)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence 3479999999999999999999 6 8999999998763
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00028 Score=68.75 Aligned_cols=61 Identities=23% Similarity=0.338 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhcCcEEEcCe-EEEEeC--C----eEEec------CC---------cEEeccEEEEecCCCCc---ccc
Q 018704 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q----KLILN------DG---------TEVPYGLLVWSTGVGPS---TLV 339 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~----~v~~~------~g---------~~~~~D~vi~a~G~~p~---~~~ 339 (351)
.+.+.+.+.+++.||+++.+. |+++.. + +|.+. +| .++.+|.||.|.|.... .++
T Consensus 145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~ 224 (584)
T 2gmh_A 145 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLY 224 (584)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHH
Confidence 455667777888899999995 888752 2 25554 33 67999999999999875 344
Q ss_pred ccCCCC
Q 018704 340 KSLDLP 345 (351)
Q Consensus 340 ~~~gl~ 345 (351)
..+|+.
T Consensus 225 ~~~gl~ 230 (584)
T 2gmh_A 225 KKFDLR 230 (584)
T ss_dssp HHTTTT
T ss_pred HHhCCC
Confidence 444543
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=97.64 E-value=2.6e-05 Score=76.92 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=32.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc------CceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS------LYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~------g~~v~vie~~~ 95 (351)
..+||||||||+|||+||+.|++. |.+|+|||+..
T Consensus 21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~ 61 (662)
T 3gyx_A 21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS 61 (662)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSC
T ss_pred EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecC
Confidence 358999999999999999999997 99999999864
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=3.4e-05 Score=73.19 Aligned_cols=36 Identities=28% Similarity=0.576 Sum_probs=32.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~~ 97 (351)
.+||+|||||++||++|+.|++.|+ +|+|+|+++..
T Consensus 4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~ 40 (472)
T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI 40 (472)
T ss_dssp -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 4799999999999999999999999 89999998764
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=8.2e-05 Score=73.81 Aligned_cols=83 Identities=22% Similarity=0.339 Sum_probs=62.2
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----------CCCc--HHHHHHHHHHhhh
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----------SSFD--DRLRHYATTQLSK 296 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l----------~~~~--~~~~~~~~~~l~~ 296 (351)
..++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+ +... .+....+.+.+++
T Consensus 372 ~~~~vvIIGgG~AGl~aA~~l~~~g--------------~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (671)
T 1ps9_A 372 QKKNLAVVGAGPAGLAFAINAAARG--------------HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEV 437 (671)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999998766 899999996422 1111 2334456677788
Q ss_pred cCcEEEcCe-EEEEeCCeEEecCCcEE-eccEEEEecCCCCc
Q 018704 297 SGVRLVRGI-VKDVDSQKLILNDGTEV-PYGLLVWSTGVGPS 336 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~~v~~~~g~~~-~~D~vi~a~G~~p~ 336 (351)
.||+++.++ |.. ..+ .+|.||+|||.+|.
T Consensus 438 ~gv~~~~~~~v~~-----------~~~~~~d~lviAtG~~p~ 468 (671)
T 1ps9_A 438 TGVTLKLNHTVTA-----------DQLQAFDETILASGIVPR 468 (671)
T ss_dssp HTCEEEESCCCCS-----------SSSCCSSEEEECCCEEEC
T ss_pred cCCEEEeCcEecH-----------HHhhcCCEEEEccCCCcC
Confidence 899999985 321 124 89999999999877
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00023 Score=68.63 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhhcCcEEEcCe-EEEEeC--C----e--EEecCC---cEEeccEEEEecCCCCc
Q 018704 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q----K--LILNDG---TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~----~--v~~~~g---~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+++.|++++.+. |++++. + + +++.++ .++.||.||.|.|....
T Consensus 121 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S~ 184 (535)
T 3ihg_A 121 KLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRSL 184 (535)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTCH
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcch
Confidence 455666777788899999994 888753 3 4 444555 67999999999998764
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00031 Score=67.34 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhcCcEEEcC-eEEEEeC--C---eEEe--cCCc--EEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLIL--NDGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~-~v~~v~~--~---~v~~--~~g~--~~~~D~vi~a~G~~p~ 336 (351)
+.+.+.+.+++.||+++.+ +|+++.. + +|.+ .+|+ ++.+|.||.|+|....
T Consensus 113 l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~ 173 (512)
T 3e1t_A 113 FDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTR 173 (512)
T ss_dssp HHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCS
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchH
Confidence 4455666777889999999 4888754 3 2444 4574 7999999999998765
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00053 Score=65.46 Aligned_cols=93 Identities=19% Similarity=0.259 Sum_probs=67.1
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------------------------
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----------------------------- 280 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~----------------------------- 280 (351)
..+|+|||||++|+-+|..|++.| .+|+++++.....
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G--------------~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~ 77 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGG--------------VDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVE 77 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhcc
Confidence 348999999999999999999865 5666665531000
Q ss_pred -------------------C------C-cHHHHHHHHHHhhhcCcEEEcC-eEEEEeC--C--eEEecCCc---EEeccE
Q 018704 281 -------------------S------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGT---EVPYGL 326 (351)
Q Consensus 281 -------------------~------~-~~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~--~v~~~~g~---~~~~D~ 326 (351)
. + ...+.+.+.+.+++.|++++.+ +|++++. + .+++.++. ++.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~ 157 (499)
T 2qa2_A 78 TSTQGHFGGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRY 157 (499)
T ss_dssp EESEEEETTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEE
T ss_pred ccccceecceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCE
Confidence 0 0 1245566667777889999999 4888864 3 35556664 799999
Q ss_pred EEEecCCCCc
Q 018704 327 LVWSTGVGPS 336 (351)
Q Consensus 327 vi~a~G~~p~ 336 (351)
||.|.|....
T Consensus 158 vVgADG~~S~ 167 (499)
T 2qa2_A 158 VVGCDGGRST 167 (499)
T ss_dssp EEECCCTTCH
T ss_pred EEEccCcccH
Confidence 9999998765
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.57 E-value=5.9e-05 Score=72.49 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=32.4
Q ss_pred CCcEEEECCchhHHHHHHhhhc-cCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie~~~~ 96 (351)
.+|+||||||+||+.+|.+|++ .+++|+|+|+.+.
T Consensus 17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~ 52 (526)
T 3t37_A 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE 52 (526)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence 5899999999999999999998 7899999998765
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00059 Score=65.18 Aligned_cols=93 Identities=20% Similarity=0.213 Sum_probs=66.6
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------------------------
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----------------------------- 280 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~----------------------------- 280 (351)
..+|+|||||++|+-+|..|++.| .+|+++++.....
T Consensus 11 ~~dVlIVGaGpaGl~~A~~La~~G--------------~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~ 76 (500)
T 2qa1_A 11 DAAVIVVGAGPAGMMLAGELRLAG--------------VEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVE 76 (500)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhcc
Confidence 348999999999999999999865 5666666531000
Q ss_pred -------------------C------Cc-HHHHHHHHHHhhhcCcEEEcC-eEEEEeC--Ce--EEecCCc---EEeccE
Q 018704 281 -------------------S------FD-DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGT---EVPYGL 326 (351)
Q Consensus 281 -------------------~------~~-~~~~~~~~~~l~~~gV~~~~~-~v~~v~~--~~--v~~~~g~---~~~~D~ 326 (351)
. ++ ..+.+.+.+.+++.|++++.+ +|++++. ++ +++.++. ++.+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~ 156 (500)
T 2qa1_A 77 TSTQGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAY 156 (500)
T ss_dssp BCCEEEETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESE
T ss_pred ccccccccceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCE
Confidence 0 00 234556667777889999999 4888853 44 4455654 799999
Q ss_pred EEEecCCCCc
Q 018704 327 LVWSTGVGPS 336 (351)
Q Consensus 327 vi~a~G~~p~ 336 (351)
||.|.|....
T Consensus 157 vVgADG~~S~ 166 (500)
T 2qa1_A 157 LVGCDGGRSS 166 (500)
T ss_dssp EEECCCTTCH
T ss_pred EEECCCcchH
Confidence 9999998765
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=5.1e-05 Score=74.99 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=33.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccC--------ceEEEEcCCC-cc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL--------YDVVCVSPRN-HM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g--------~~v~vie~~~-~~ 97 (351)
.++|+|||||++||+||+.|++.| ++|+|+|+++ +.
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 468999999999999999999988 9999999988 65
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0008 Score=62.38 Aligned_cols=91 Identities=21% Similarity=0.329 Sum_probs=64.1
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCCCCCC------Cc---------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEILSS------FD--------------------- 283 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~l~~------~~--------------------- 283 (351)
+|+|||||.+|+-+|..|++.| .+ |+++++...... +.
T Consensus 6 dVvIVGaG~aGl~~A~~L~~~G--------------~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~ 71 (410)
T 3c96_A 6 DILIAGAGIGGLSCALALHQAG--------------IGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAI 71 (410)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSE
T ss_pred eEEEECCCHHHHHHHHHHHhCC--------------CCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCC
Confidence 8999999999999999999876 77 888887532100 00
Q ss_pred -----------------------------------HHHHHHHHHHhhh-cC-cEEEcCe-EEEEeC-C--eEEecC---C
Q 018704 284 -----------------------------------DRLRHYATTQLSK-SG-VRLVRGI-VKDVDS-Q--KLILND---G 319 (351)
Q Consensus 284 -----------------------------------~~~~~~~~~~l~~-~g-V~~~~~~-v~~v~~-~--~v~~~~---g 319 (351)
..+.+.+.+.+.+ .| ++++.+. |++++. + .+.+.+ |
T Consensus 72 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~~~~v~v~~~~~~~g 151 (410)
T 3c96_A 72 PTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHG 151 (410)
T ss_dssp EECEEEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTS
T ss_pred CcceEEEEcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEecCCccEEEEecCCCC
Confidence 1234455555655 35 6899994 877752 3 355554 7
Q ss_pred --cEEeccEEEEecCCCCc
Q 018704 320 --TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 320 --~~~~~D~vi~a~G~~p~ 336 (351)
.++.+|.||.|.|....
T Consensus 152 ~~~~~~ad~vV~AdG~~S~ 170 (410)
T 3c96_A 152 KPQALGADVLVGADGIHSA 170 (410)
T ss_dssp CEEEEEESEEEECCCTTCH
T ss_pred CceEEecCEEEECCCccch
Confidence 57899999999998765
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0004 Score=71.68 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=64.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----C-----C----cHHHHHHHHHHhhhc-
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----S-----F----DDRLRHYATTQLSKS- 297 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~----~-----~----~~~~~~~~~~~l~~~- 297 (351)
+|+|||||+.|+.+|..+.+.+ .+|+++++...+. . + ..+....+.+.+.+.
T Consensus 130 dVvVIGaGpAGl~AA~~la~~G--------------~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~ 195 (965)
T 2gag_A 130 DVLVVGAGPAGLAAAREASRSG--------------ARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAE 195 (965)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHST
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcC
Confidence 8999999999999999999876 8999999864221 0 1 123334444556664
Q ss_pred CcEEEcCe-EEEEeCCe-E----------Ee--------cCCcEEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-VKDVDSQK-L----------IL--------NDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v~~v~~~~-v----------~~--------~~g~~~~~D~vi~a~G~~p~ 336 (351)
+|+++.++ |.++.... + .+ .++.++.+|.||+|||..|.
T Consensus 196 ~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~ 254 (965)
T 2gag_A 196 ETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHER 254 (965)
T ss_dssp TEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEEC
T ss_pred CcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccC
Confidence 99999994 88776431 1 11 11236899999999998776
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0012 Score=59.52 Aligned_cols=92 Identities=20% Similarity=0.307 Sum_probs=64.1
Q ss_pred CeEEEECCChHHHHHHHHHHHH--HHHHHHhhhcCCCCccEEEEEeCCCCCC----------------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDF--IMRDVRQRYSHVKDYIHVTLIEANEILS---------------------------- 280 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~l~---------------------------- 280 (351)
..|+|||||.+|+-+|..|++. + .+|.++++.....
T Consensus 80 ~DVvIVGgG~AGL~aA~~La~~~~G--------------~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv 145 (344)
T 3jsk_A 80 TDIVIVGAGSCGLSAAYVLSTLRPD--------------LRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGV 145 (344)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTT--------------SCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTC
T ss_pred CCEEEECccHHHHHHHHHHHhcCCC--------------CEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCC
Confidence 3899999999999999999886 5 8899999863211
Q ss_pred ------C-----CcHHHHHHHHHHhhh-cCcEEEcCe-EEEEeC-------------------C-----eEEec------
Q 018704 281 ------S-----FDDRLRHYATTQLSK-SGVRLVRGI-VKDVDS-------------------Q-----KLILN------ 317 (351)
Q Consensus 281 ------~-----~~~~~~~~~~~~l~~-~gV~~~~~~-v~~v~~-------------------~-----~v~~~------ 317 (351)
. ...++.+.+.+.+.+ .|++++.+. +.++.. + +|++.
T Consensus 146 ~~~~~G~~~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~ 225 (344)
T 3jsk_A 146 PYEDEGDYVVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSM 225 (344)
T ss_dssp CCEECSSEEEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHT
T ss_pred cccccCCeEEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeec
Confidence 0 012334555666666 599999994 766631 1 23321
Q ss_pred --------CCcEEeccEEEEecCCCCc
Q 018704 318 --------DGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 318 --------~g~~~~~D~vi~a~G~~p~ 336 (351)
++.++.++.||.|||....
T Consensus 226 ~g~~~~~~d~~~i~Ak~VV~ATG~~s~ 252 (344)
T 3jsk_A 226 HHDDQSAMDPNTINAPVIISTTGHDGP 252 (344)
T ss_dssp TSSSSSCCBCEEEECSEEEECCCSSSS
T ss_pred cCCcccccCceEEEcCEEEECCCCCch
Confidence 2346899999999998755
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0014 Score=58.69 Aligned_cols=91 Identities=18% Similarity=0.320 Sum_probs=63.0
Q ss_pred eEEEECCChHHHHHHHHHHHH--HHHHHHhhhcCCCCccEEEEEeCCCCCC-C---------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDF--IMRDVRQRYSHVKDYIHVTLIEANEILS-S--------------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~l~-~--------------------------- 281 (351)
+|+|||||.+|+-+|..|++. + .+|+++++..... .
T Consensus 67 dv~IiG~G~aGl~aA~~la~~~~g--------------~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~ 132 (326)
T 2gjc_A 67 DVIIVGAGSSGLSAAYVIAKNRPD--------------LKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIP 132 (326)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTT--------------SCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCC
T ss_pred CEEEECccHHHHHHHHHHHhcCCC--------------CeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcc
Confidence 799999999999999999886 5 8899999853211 0
Q ss_pred -----------CcHHHHHHHHHHhhh-cCcEEEcCe-EEEEeC----C-------eEEec--------------CCcEEe
Q 018704 282 -----------FDDRLRHYATTQLSK-SGVRLVRGI-VKDVDS----Q-------KLILN--------------DGTEVP 323 (351)
Q Consensus 282 -----------~~~~~~~~~~~~l~~-~gV~~~~~~-v~~v~~----~-------~v~~~--------------~g~~~~ 323 (351)
....+...+.+.+.+ .||+++.+. |.++.. + +|++. ++.++.
T Consensus 133 ~~~~g~~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~ 212 (326)
T 2gjc_A 133 YEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIE 212 (326)
T ss_dssp CEECSSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEE
T ss_pred cccCCCeEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEE
Confidence 012334455556666 499999984 877632 1 23331 345689
Q ss_pred c---------------cEEEEecCCCCc
Q 018704 324 Y---------------GLLVWSTGVGPS 336 (351)
Q Consensus 324 ~---------------D~vi~a~G~~p~ 336 (351)
| |.||.|||+...
T Consensus 213 A~G~~~~~~~~~~~~~~~VV~ATG~~~~ 240 (326)
T 2gjc_A 213 LAGYKNDGTRDLSQKHGVILSTTGHDGP 240 (326)
T ss_dssp ESCCCSSSCCCSSTTCCEEEECCCCC--
T ss_pred EeeccccccccccccCCEEEECcCCCch
Confidence 9 999999998865
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00011 Score=71.40 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=32.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~ 96 (351)
..+|+||||||.||+.+|.+|++.+ .+|+|||+.+.
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 4589999999999999999999987 79999998765
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00015 Score=69.08 Aligned_cols=90 Identities=22% Similarity=0.378 Sum_probs=61.9
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------CC---cHHHHHHHHHHhhh
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------SF---DDRLRHYATTQLSK 296 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~-----------~~---~~~~~~~~~~~l~~ 296 (351)
.+|+|||||..|+.+|..|.+. .+|+++++++.+. .+ ..++...+.+.+ +
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~---------------~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~ 172 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY---------------LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-N 172 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT---------------CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-C
T ss_pred CCEEEECccHHHHHHHHHHHhc---------------CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-h
Confidence 3799999999999999988752 5799999864221 11 123333334444 6
Q ss_pred cCcEEEcCe-EEEEeCC--eEEe---cCCc--EEeccEEEEecCCCCc
Q 018704 297 SGVRLVRGI-VKDVDSQ--KLIL---NDGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~--~v~~---~~g~--~~~~D~vi~a~G~~p~ 336 (351)
.+++++.+. +.++..+ .+.. .+++ ++.+|.+|+|||..|.
T Consensus 173 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~ 220 (493)
T 1y56_A 173 ENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDS 220 (493)
T ss_dssp TTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEEC
T ss_pred cCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCcc
Confidence 699999884 7766542 2322 4454 6899999999998876
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0018 Score=62.60 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=29.5
Q ss_pred CeEEEECCChHHHHHHHHHHH---HHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSD---FIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~---~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.+|+|||||..|+-+|..|++ .+ .+|+++++..
T Consensus 26 ~dVvIVGgG~aGl~aA~~La~~~~~G--------------~~V~liE~~~ 61 (550)
T 2e4g_A 26 DKILIVGGGTAGWMAASYLGKALQGT--------------ADITLLQAPD 61 (550)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTTTS--------------SEEEEEECCC
T ss_pred CcEEEECCCHHHHHHHHHHHhhcCCC--------------CcEEEEeCCC
Confidence 489999999999999999988 44 8999999964
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=8.8e-05 Score=71.54 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=32.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|+||||||.||+.+|.+|++ |.+|+|+|+.+.
T Consensus 26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~ 59 (536)
T 1ju2_A 26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL 59 (536)
T ss_dssp EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 4899999999999999999999 999999999865
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00025 Score=65.17 Aligned_cols=83 Identities=20% Similarity=0.369 Sum_probs=61.5
Q ss_pred eEEEECCChHHHHHHHHHHHH--HHHHHHhhhcCCCCccEEEEEeCCCCC------------------------CC----
Q 018704 232 HCVVVGGGPTGVEFSGELSDF--IMRDVRQRYSHVKDYIHVTLIEANEIL------------------------SS---- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~l------------------------~~---- 281 (351)
+|+|||||.+|+-+|..|++. | .+|+++++.... ..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G--------------~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPL--------------WAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERL 67 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTT--------------SEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGG
T ss_pred eEEEECCCHHHHHHHHHHHhcCCC--------------CCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHH
Confidence 799999999999999999987 6 788888875211 00
Q ss_pred ----------------------------CcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecC
Q 018704 282 ----------------------------FDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTG 332 (351)
Q Consensus 282 ----------------------------~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G 332 (351)
....+.+.+.+.+++.|++++.+. |++++.. ..+++|.||.|.|
T Consensus 68 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-------~~~~ad~vV~AdG 140 (381)
T 3c4a_A 68 NPQFLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-------PLADYDLVVLANG 140 (381)
T ss_dssp CCEEECCEEEEESSSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-------CGGGCSEEEECCG
T ss_pred hhccccceEEEeCCeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-------ccccCCEEEECCC
Confidence 013455666777777799999984 8777542 1367999999999
Q ss_pred CCC
Q 018704 333 VGP 335 (351)
Q Consensus 333 ~~p 335 (351)
...
T Consensus 141 ~~S 143 (381)
T 3c4a_A 141 VNH 143 (381)
T ss_dssp GGG
T ss_pred CCc
Confidence 765
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0017 Score=62.44 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=37.9
Q ss_pred HHHHHHHhhh-cCcEEEcCeEEEEeC--C----eEEecCCcEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSK-SGVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~-~gV~~~~~~v~~v~~--~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+++ .||+++.++|+++.. + .|.+.+|.++.+|.||.|+|.+..
T Consensus 178 ~~~L~~~a~~~~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 178 SQLLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL 234 (526)
T ss_dssp HHHHHHHHHHTSCCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred HHHHHHHHHhcCCCEEEEeEEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence 3444555666 799999998888753 2 466678778999999999998765
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00023 Score=71.30 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=63.3
Q ss_pred CCcEEEEC--CchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-E
Q 018704 62 KPRVVVLG--SGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (351)
Q Consensus 62 ~~~VvIIG--~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (351)
..+|+||| ||..|+.+|..|++.|.+|+|+++.+ +...... ... ...+ .. .....++.++. .
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~--------~~~--~~~~---~~-~l~~~GV~i~~~~ 592 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHF--------TLE--YPNM---MR-RLHELHVEELGDH 592 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHH--------TTC--HHHH---HH-HHHHTTCEEECSE
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccccc--------ccc--HHHH---HH-HHHhCCCEEEcCc
Confidence 46899999 99999999999999999999999977 3210000 000 0111 11 12234677665 4
Q ss_pred EeeeEeCCCCEEEEEee-cCcccc-----------CCCceeEeeccEEEEecCCCcCC
Q 018704 139 HCAGIDTDNHVVHCETV-TDELRT-----------LEPWKFKISYDKLVIALGAEAST 184 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~-~~~~~~-----------~~~~~~~~~~d~lviAtG~~p~~ 184 (351)
.++.++.+. +.++.. .++... .+.....+.+|.||+|+|..|..
T Consensus 593 ~v~~i~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~ 648 (729)
T 1o94_A 593 FCSRIEPGR--MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSEC 648 (729)
T ss_dssp EEEEEETTE--EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECC
T ss_pred EEEEEECCe--EEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCCh
Confidence 677777543 333221 111100 00112348999999999987654
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00075 Score=64.43 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEec---CCc--EEeccEEEEecCCCCccccc
Q 018704 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILN---DGT--EVPYGLLVWSTGVGPSTLVK 340 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~ 340 (351)
.+...+.+.+++.|++++.+. |+++.. + +|.+. +|+ ++.+|.||.|+|.+...+..
T Consensus 150 ~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~ 215 (501)
T 2qcu_A 150 RLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFD 215 (501)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHH
Confidence 345566677778899999984 888753 2 46663 565 68999999999988765544
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.002 Score=61.50 Aligned_cols=52 Identities=23% Similarity=0.222 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhhcCcEEEcCeEEEEeC--C----eEEecCCcEEeccEEEEecCCCCc
Q 018704 285 RLRHYATTQLSKSGVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~v~~v~~--~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+++.||+++.++|+++.. + +|.+.+|+++++|.||.|+|.+..
T Consensus 174 ~l~~~L~~~a~~~gv~~~~~~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 174 EVARYLSEYAIARGVRHVVDDVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL 231 (511)
T ss_dssp HHHHHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred HHHHHHHHHHHHCCCEEEECeEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence 344555666677899999988888753 2 366778888999999999998765
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00022 Score=68.33 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=33.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|++|||+|++|+.+|.+|++.|.+|+|+|+...
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~ 45 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 45 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 458999999999999999999999999999998765
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0002 Score=69.51 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhc-cCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie~~~ 95 (351)
..+|+||||||.||+.+|.+|++ .+.+|+|+|+.+
T Consensus 18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~ 53 (583)
T 3qvp_A 18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 53 (583)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 45899999999999999999997 589999999977
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00018 Score=68.89 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=33.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..+|++|||+|++|+.+|.+|++.|.+|+|+|+....
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~ 40 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW 40 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 3479999999999999999999999999999988754
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0013 Score=60.00 Aligned_cols=91 Identities=18% Similarity=0.318 Sum_probs=63.0
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------C-----------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-------S----------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~-------~----------------------- 281 (351)
.|+|||||++|+-+|..|++.| .+|+++++.+..+ .
T Consensus 6 DViIVGaGpaGl~~A~~La~~G--------------~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~ 71 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYG--------------LKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVK 71 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccc
Confidence 6999999999999999999877 7777777642100 0
Q ss_pred ---------------------------Cc-HHHHHHHHHHhhhcCcEEEcCe-EEEEeC--CeEE---e-cCC--cEEec
Q 018704 282 ---------------------------FD-DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLI---L-NDG--TEVPY 324 (351)
Q Consensus 282 ---------------------------~~-~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v~---~-~~g--~~~~~ 324 (351)
++ ..+.+.+.+.+.+.|++++.+. ++++.. +.+. . .+| .++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a 151 (397)
T 3oz2_A 72 GARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRA 151 (397)
T ss_dssp EEEEECTTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred eEEEEeCCCceEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEE
Confidence 00 1234556666778899999994 776543 3322 2 233 35889
Q ss_pred cEEEEecCCCCc
Q 018704 325 GLLVWSTGVGPS 336 (351)
Q Consensus 325 D~vi~a~G~~p~ 336 (351)
|.||-|.|....
T Consensus 152 ~~vIgAdG~~S~ 163 (397)
T 3oz2_A 152 KMVIAADGFESE 163 (397)
T ss_dssp EEEEECCCTTCH
T ss_pred eEEEeCCccccH
Confidence 999999997654
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0022 Score=61.27 Aligned_cols=51 Identities=22% Similarity=0.182 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhcCcEEEcCe-EEEEeCC------eEEec-CCc--EEecc-EEEEecCCCC
Q 018704 285 RLRHYATTQLSKSGVRLVRGI-VKDVDSQ------KLILN-DGT--EVPYG-LLVWSTGVGP 335 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~-v~~v~~~------~v~~~-~g~--~~~~D-~vi~a~G~~p 335 (351)
.+...+.+.+++.||+++++. |+++..+ +|++. +|+ ++.+| .||+|+|-..
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence 455566667778899999995 8887532 45554 343 48896 9999999665
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00021 Score=69.13 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=32.8
Q ss_pred CCcEEEECCchhHHHHHHhhhc-cCceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie~~~~~ 97 (351)
.+|+||||||.||+.+|.+|++ .+.+|+|+|+.+..
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence 4799999999999999999998 79999999987653
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00046 Score=67.24 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=33.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhc-cCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie~~~~~ 97 (351)
..+|++|||+|++|+.+|.+|++ .|.+|+|+|+....
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~ 60 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence 45899999999999999999999 89999999998654
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0004 Score=67.05 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=33.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhcc-CceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~-g~~v~vie~~~~~ 97 (351)
+.+|++|||+|++|+.+|.+|++. |.+|+|+|+....
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD 49 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence 358999999999999999999997 8999999998653
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00071 Score=52.69 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=33.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
....+|+|||+|..|...|..|.+.|++|+++|+++.
T Consensus 5 ~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~ 41 (140)
T 3fwz_A 5 DICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT 41 (140)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence 3457899999999999999999999999999999654
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0028 Score=59.95 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=34.3
Q ss_pred HHHHHHHhhhcCcEEEcCe-EEEEe--CCe---EEec-CCcEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSKSGVRLVRGI-VKDVD--SQK---LILN-DGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~~gV~~~~~~-v~~v~--~~~---v~~~-~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+++.||+++.+. + ++. ++. +.+. ++.++.+|.||+|+|..+.
T Consensus 122 ~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~ 177 (472)
T 2e5v_A 122 FNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSY 177 (472)
T ss_dssp HHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGG
T ss_pred HHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcc
Confidence 3445555667799999995 8 874 343 3443 2335789999999998876
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0031 Score=62.08 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhhcCc--EEEcCe-EEEEeCC--------eEEec------CC--cEEeccEEEEecCCCCc
Q 018704 285 RLRHYATTQLSKSGV--RLVRGI-VKDVDSQ--------KLILN------DG--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV--~~~~~~-v~~v~~~--------~v~~~------~g--~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+++.|+ +++.+. |++++.+ .+.+. +| .++.+|.||.|.|.+..
T Consensus 142 ~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~ 212 (639)
T 2dkh_A 142 RVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSN 212 (639)
T ss_dssp HHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCH
T ss_pred HHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchH
Confidence 455667777888876 999995 8888532 23443 46 46899999999998765
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0013 Score=52.03 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=32.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...+|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~ 53 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY 53 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 347899999999999999999999999999998654
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0054 Score=59.49 Aligned_cols=58 Identities=12% Similarity=0.036 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEec---CCc--EEeccEEEEecCCCCccccccCC
Q 018704 286 LRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILN---DGT--EVPYGLLVWSTGVGPSTLVKSLD 343 (351)
Q Consensus 286 ~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~~~g 343 (351)
+...+.+.+.+.|++++.++ |+++.. + +|.+. +|+ ++.||.||+|+|.+...+....+
T Consensus 190 l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~g 258 (571)
T 2rgh_A 190 LVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNF 258 (571)
T ss_dssp HHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhhc
Confidence 33445556677899999994 888753 3 35543 343 68999999999987665554443
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.01 Score=57.20 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhcCcEEEcCe-EEEEeC--Ce--EEecC---C--cEEeccEEEEecCCCCc
Q 018704 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILND---G--TEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 285 ~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~--v~~~~---g--~~~~~D~vi~a~G~~p~ 336 (351)
.+.+.+.+.+++. ++.+. |++++. ++ +++.+ | .++.+|.||.|.|....
T Consensus 139 ~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~ 197 (549)
T 2r0c_A 139 WLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSP 197 (549)
T ss_dssp HHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTCH
T ss_pred HHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCcH
Confidence 3445555666555 77784 888754 33 44544 6 46899999999998765
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0065 Score=57.90 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=63.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--------CCCC----------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--------ILSS---------------------- 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~l~~---------------------- 281 (351)
.|+|||+|++|+-+|..|.+.+.+.+..............++++.+ +++.
T Consensus 41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s 120 (501)
T 4b63_A 41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT 120 (501)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence 7999999999999999998765322222111112234455666532 0110
Q ss_pred --------------------C--cHHHHHHHHHHhhhcCcEEEcCe-EEEEeC---C---------eEEecCC-----cE
Q 018704 282 --------------------F--DDRLRHYATTQLSKSGVRLVRGI-VKDVDS---Q---------KLILNDG-----TE 321 (351)
Q Consensus 282 --------------------~--~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~---~---------~v~~~~g-----~~ 321 (351)
+ -.++.++++...++.+..+..++ |++++. + .|+..++ .+
T Consensus 121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~ 200 (501)
T 4b63_A 121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISA 200 (501)
T ss_dssp HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEE
T ss_pred hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEE
Confidence 0 12445556556666677788885 888752 1 3555433 35
Q ss_pred EeccEEEEecCCCCc
Q 018704 322 VPYGLLVWSTGVGPS 336 (351)
Q Consensus 322 ~~~D~vi~a~G~~p~ 336 (351)
+.|+.||+|+|..|.
T Consensus 201 ~~ar~vVlatG~~P~ 215 (501)
T 4b63_A 201 RRTRKVVIAIGGTAK 215 (501)
T ss_dssp EEEEEEEECCCCEEC
T ss_pred EEeCEEEECcCCCCC
Confidence 789999999998877
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0017 Score=50.49 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=31.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+.+|+|+|+|..|...|..|.+.|++|+++|+++.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~ 40 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE 40 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 36899999999999999999999999999998653
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0018 Score=54.60 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=50.8
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEE
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 308 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~ 308 (351)
.+++|+|||||.+|...+..|...| .+|+++.+. ..++ +.+..++.+++++.+...
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~G--------------A~VtVvap~-----~~~~----l~~l~~~~~i~~i~~~~~- 85 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEG--------------AAITVVAPT-----VSAE----INEWEAKGQLRVKRKKVG- 85 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGC--------------CCEEEECSS-----CCHH----HHHHHHTTSCEEECSCCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEECCC-----CCHH----HHHHHHcCCcEEEECCCC-
Confidence 4469999999999999999999876 899999763 2233 333444556776654211
Q ss_pred EeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 309 VDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 309 v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.+.--.+|.||.|||-...
T Consensus 86 ---------~~dL~~adLVIaAT~d~~~ 104 (223)
T 3dfz_A 86 ---------EEDLLNVFFIVVATNDQAV 104 (223)
T ss_dssp ---------GGGSSSCSEEEECCCCTHH
T ss_pred ---------HhHhCCCCEEEECCCCHHH
Confidence 1111238999999986643
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0026 Score=50.17 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=31.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+.+|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~ 36 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4689999999999999999999999999999963
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0021 Score=49.50 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=31.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|+|||+|..|...|..|.+.|++|+++|+++.
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~ 38 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD 38 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 5899999999999999999999999999998543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0022 Score=47.74 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccC-ceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~ 95 (351)
.++|+|+|+|..|..+|..|.+.| ++|+++++++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 368999999999999999999999 8999999864
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0036 Score=50.94 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhcc-CceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~-g~~v~vie~~~~ 96 (351)
..+|+|||+|..|..+|..|.+. |++|+++|+++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~ 74 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE 74 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence 46899999999999999999998 999999998653
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.004 Score=60.78 Aligned_cols=54 Identities=9% Similarity=-0.042 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEe--C--C---eEEecCCcEEeccEEEEecCCCCcc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVD--S--Q---KLILNDGTEVPYGLLVWSTGVGPST 337 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~--~--~---~v~~~~g~~~~~D~vi~a~G~~p~~ 337 (351)
..+.+.+.+.++..|.++++++ |.+|. + + +|++.+|+++.||.||....+.|..
T Consensus 378 g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~~ 439 (650)
T 1vg0_A 378 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSEN 439 (650)
T ss_dssp THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCTT
T ss_pred hHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCHh
Confidence 4788888889999999999995 88863 3 2 4566789999999999988777653
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0056 Score=51.51 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=32.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..++|+|||||..|...|..|.+.|.+|+|++++.
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~ 64 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV 64 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 35789999999999999999999999999999853
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0066 Score=54.52 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=32.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
...+|+|||+|..|.+.|..|++.|+ +|+++|.++.
T Consensus 8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~ 44 (331)
T 1pzg_A 8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG 44 (331)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 34689999999999999999999998 9999998754
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.056 Score=54.20 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=28.5
Q ss_pred CcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecC
Q 018704 298 GVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTG 332 (351)
Q Consensus 298 gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G 332 (351)
|++++.++ |++++. + .|++.+|+++.+|.||+|+.
T Consensus 543 gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P 582 (776)
T 4gut_A 543 GLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVP 582 (776)
T ss_dssp TSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCC
T ss_pred CCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCC
Confidence 67899995 999874 2 45667888899999999995
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0055 Score=47.31 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=30.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~ 39 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 39 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999999999999854
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.015 Score=55.92 Aligned_cols=31 Identities=19% Similarity=0.481 Sum_probs=26.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.|+|||||.+|+-.|..+++ + .+|.++++..
T Consensus 10 DVvVVG~G~AGl~aAl~la~-G--------------~~V~vlEk~~ 40 (540)
T 1chu_A 10 DVLIIGSGAAGLSLALRLAD-Q--------------HQVIVLSKGP 40 (540)
T ss_dssp SEEEECCSHHHHHHHHHHTT-T--------------SCEEEECSSC
T ss_pred CEEEECccHHHHHHHHHHhc-C--------------CcEEEEECCC
Confidence 79999999999999999987 6 7788887753
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0051 Score=52.46 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=29.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.|+|||||++|+-+|..|++.| .+|+++++++
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G--------------~~V~v~Ek~~ 35 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAG--------------HQVHLFDKSR 35 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCC
Confidence 7999999999999999999987 9999999864
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.033 Score=54.27 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhcC-cEEEcCe-EEEEe--CC---eEEe---cCCc--EEeccEEEEecCCCCc
Q 018704 286 LRHYATTQLSKSG-VRLVRGI-VKDVD--SQ---KLIL---NDGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 286 ~~~~~~~~l~~~g-V~~~~~~-v~~v~--~~---~v~~---~~g~--~~~~D~vi~a~G~~p~ 336 (351)
+...+.+.+.+.| |+++.+. |+++. ++ ++.. .+|+ .+.+|.||+|+|-...
T Consensus 136 l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~ 198 (602)
T 1kf6_A 136 MLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 198 (602)
T ss_dssp HHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcc
Confidence 3344555566677 9999995 87774 33 3432 5676 6899999999997655
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0075 Score=56.65 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=32.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..++|+|||.|.+|+++|..|.+.|++|++.|.+.
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 34789999999999999999999999999999865
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.059 Score=52.33 Aligned_cols=50 Identities=16% Similarity=0.017 Sum_probs=34.6
Q ss_pred HHHHHHHhhhcCcEEEcCe-EEEEeC---C---eEEe---cCCc--EEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSKSGVRLVRGI-VKDVDS---Q---KLIL---NDGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~~gV~~~~~~-v~~v~~---~---~v~~---~~g~--~~~~D~vi~a~G~~p~ 336 (351)
...+.+.+++.||+++.+. |+++.. + +|.. .+|+ .+.+|.||+|+|-...
T Consensus 146 ~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~ 207 (588)
T 2wdq_A 146 LHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_dssp HHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred HHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCcc
Confidence 3345555667799999995 888742 2 3443 4565 5889999999997654
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0066 Score=52.78 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=31.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.++|+|||||..|+..|..|.+.|.+|+|++++.
T Consensus 13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 4789999999999999999999999999999854
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0097 Score=55.90 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=59.6
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeE-E
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIV-K 307 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v-~ 307 (351)
.+|+|.|||.|.+|+-+|..|.+.| .+|+..+.+... .+ ...+.|++.||+++.|.- .
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G--------------~~V~~~D~~~~~--~~-----~~~~~L~~~gi~~~~g~~~~ 66 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLG--------------AIVTVNDGKPFD--EN-----PTAQSLLEEGIKVVCGSHPL 66 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTT--------------CEEEEEESSCGG--GC-----HHHHHHHHTTCEEEESCCCG
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC--------------CEEEEEeCCccc--CC-----hHHHHHHhCCCEEEECCChH
Confidence 3469999999999999999999887 899999985321 01 123466778999887631 1
Q ss_pred EEeCCeEEecCCcEEeccEEEEecCCCCc-ccc---ccCCCC
Q 018704 308 DVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLV---KSLDLP 345 (351)
Q Consensus 308 ~v~~~~v~~~~g~~~~~D~vi~a~G~~p~-~~~---~~~gl~ 345 (351)
.+ + ++ .+|.||+++|..++ +.+ ++.|++
T Consensus 67 ~~------~-~~---~~d~vv~spgi~~~~p~~~~a~~~gi~ 98 (451)
T 3lk7_A 67 EL------L-DE---DFCYMIKNPGIPYNNPMVKKALEKQIP 98 (451)
T ss_dssp GG------G-GS---CEEEEEECTTSCTTSHHHHHHHHTTCC
T ss_pred Hh------h-cC---CCCEEEECCcCCCCChhHHHHHHCCCc
Confidence 00 0 00 28999999999887 443 344554
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0068 Score=50.83 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=31.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|+|||+|..|...|..|.+.|++|+++|+++.
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~ 34 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRE 34 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 3699999999999999999999999999998654
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.011 Score=54.28 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=32.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...+|+|||+|.+|+.+|..|...|.+|+++|+.+.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~ 224 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA 224 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 347899999999999999999999999999998764
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0075 Score=56.43 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=31.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++|+|||.|.+|+++|..|.++|++|+++|.+..
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~ 39 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence 36899999999999999999999999999997654
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.057 Score=53.26 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=19.2
Q ss_pred eEEEECCChHHHHHHHHHHH
Q 018704 232 HCVVVGGGPTGVEFSGELSD 251 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~ 251 (351)
.|+|||||++|+-+|..|++
T Consensus 10 dVlIVGaGpaGL~lA~~La~ 29 (665)
T 1pn0_A 10 DVLIVGAGPAGLMAARVLSE 29 (665)
T ss_dssp EEEEECCSHHHHHHHHHHHH
T ss_pred cEEEECcCHHHHHHHHHHhc
Confidence 79999999999999999998
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.02 Score=51.21 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=57.6
Q ss_pred cCeEEEECCChHHHH-HHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EE
Q 018704 230 LLHCVVVGGGPTGVE-FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VK 307 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e-~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~ 307 (351)
.+++.|||.|.+|+- +|..|.+.| .+|+..+..... + ..+.|++.||+++.|. ..
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G--------------~~V~~~D~~~~~----~-----~~~~L~~~gi~v~~g~~~~ 60 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAG--------------FEVSGCDAKMYP----P-----MSTQLEALGIDVYEGFDAA 60 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTT--------------CEEEEEESSCCT----T-----HHHHHHHTTCEEEESCCGG
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCC--------------CEEEEEcCCCCc----H-----HHHHHHhCCCEEECCCCHH
Confidence 359999999999996 888888887 899999986421 1 2345667799887652 11
Q ss_pred EEeCCeEEecCCcEEeccEEEEecCCCCc-ccc---ccCCCC
Q 018704 308 DVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLV---KSLDLP 345 (351)
Q Consensus 308 ~v~~~~v~~~~g~~~~~D~vi~a~G~~p~-~~~---~~~gl~ 345 (351)
. +.. ..+|.||+++|..++ +.+ ++.|++
T Consensus 61 ~-------l~~---~~~d~vV~Spgi~~~~p~~~~a~~~gi~ 92 (326)
T 3eag_A 61 Q-------LDE---FKADVYVIGNVAKRGMDVVEAILNLGLP 92 (326)
T ss_dssp G-------GGS---CCCSEEEECTTCCTTCHHHHHHHHTTCC
T ss_pred H-------cCC---CCCCEEEECCCcCCCCHHHHHHHHcCCc
Confidence 0 000 148999999999887 544 334554
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=95.41 E-value=0.073 Score=51.99 Aligned_cols=50 Identities=18% Similarity=0.040 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcCcEEEcCe-EEEEe--CC---eEEe---cCCc--EEeccEEEEecCCCCc
Q 018704 287 RHYATTQLSKSGVRLVRGI-VKDVD--SQ---KLIL---NDGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~~~gV~~~~~~-v~~v~--~~---~v~~---~~g~--~~~~D~vi~a~G~~p~ 336 (351)
...+.+.+.+.||+++.+. |.++. ++ +|.. .+|+ .+.++.||+|||-...
T Consensus 158 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~ 218 (621)
T 2h88_A 158 LHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGR 218 (621)
T ss_dssp HHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred HHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccc
Confidence 3344445556789999985 77764 23 3444 3565 5889999999997654
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.013 Score=53.37 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=32.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...+|+|||+|.+|+.+|..|...|.+|+++|+++.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~ 218 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE 218 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357899999999999999999999999999998754
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.017 Score=51.04 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 49 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED 49 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 5799999999999999999999999999998754
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.015 Score=51.81 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=31.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
++|+|||+|..|.+.|..|++.|.+|+++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 689999999999999999999999999999865
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.015 Score=45.11 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=31.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|+|||+|..|...|..|.+.|++|+++++...
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~ 55 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNID 55 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 46899999999999999999999999999998643
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.018 Score=50.34 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=32.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD 38 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 36899999999999999999999999999998754
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.023 Score=50.41 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=33.1
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...++|.|||.|..|...|..|++.|++|+++|+++.
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 55 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS 55 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 3447899999999999999999999999999998654
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.024 Score=52.67 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=31.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+.+|.|||.|..||..|..|++.|++|+.+|-++
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~ 54 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP 54 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 45789999999999999999999999999999553
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.023 Score=52.45 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=32.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|+|||+|.+|+.+|..+...|.+|+++|++..
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~ 206 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 206 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 47899999999999999999999999999998654
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.019 Score=52.13 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=32.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~ 95 (351)
...+|||+|||.||+.+|..|...|. +|+++|++.
T Consensus 187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G 222 (398)
T 2a9f_A 187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG 222 (398)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 45799999999999999999999999 899999874
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.019 Score=53.79 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=31.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||+|..|+..|..|++.|++|+++|+++.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~ 36 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN 36 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 5899999999999999999999999999998753
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.018 Score=51.11 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=30.3
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
++|+|||+|..|.+.|..|++.|.+|+++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 689999999999999999999999999999854
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.019 Score=51.05 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=31.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|.|||+|.-|-..|..++..|++|+++|.++.
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~ 40 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR 40 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 5899999999999999999999999999998754
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.025 Score=51.32 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=31.4
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|+|||||..|..+|+.+++.|++|+++|+++.
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~ 35 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ 35 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 6899999999999999999999999999997654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.029 Score=51.44 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=32.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...+|+|||+|.+|+.+|..+...|.+|+++|+.+.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~ 206 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA 206 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357899999999999999999999999999998653
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.027 Score=50.38 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=31.6
Q ss_pred CCCcEEEECCchhHHH-HHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCR-LMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~-aA~~L~~~g~~v~vie~~~~ 96 (351)
..++|.|||.|.+|++ +|..|.+.|++|++.|.+..
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~ 39 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY 39 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 3478999999999996 78899999999999998653
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.028 Score=50.03 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=31.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~ 95 (351)
.++|+|||+|..|.+.|..|++.|+ +|+++|++.
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 3689999999999999999999998 999999865
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.024 Score=50.11 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=31.3
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||+|..|...|..|.+.|++|+++++++.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~ 37 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPA 37 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 5899999999999999999999999999998653
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.032 Score=46.38 Aligned_cols=35 Identities=11% Similarity=0.259 Sum_probs=31.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++|.|||+|..|.+.|..|.+.|++|+++++++.
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46899999999999999999999999999998654
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.036 Score=52.06 Aligned_cols=74 Identities=20% Similarity=0.193 Sum_probs=50.4
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEE
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 308 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~ 308 (351)
++++|+|||||.+|...+..|.+.| .+|+++... ..+++ .+...+.+++++.+...
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~g--------------a~V~vi~~~-----~~~~~----~~l~~~~~i~~~~~~~~- 66 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAG--------------ARLTVNALT-----FIPQF----TVWANEGMLTLVEGPFD- 66 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTT--------------BEEEEEESS-----CCHHH----HHHHTTTSCEEEESSCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCc--------------CEEEEEcCC-----CCHHH----HHHHhcCCEEEEECCCC-
Confidence 3469999999999999999999887 899999863 22232 33334456777654211
Q ss_pred EeCCeEEecCCcEEeccEEEEecCCCC
Q 018704 309 VDSQKLILNDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 309 v~~~~v~~~~g~~~~~D~vi~a~G~~p 335 (351)
.+.--.+|.||.|||...
T Consensus 67 ---------~~~l~~~~lVi~at~~~~ 84 (457)
T 1pjq_A 67 ---------ETLLDSCWLAIAATDDDT 84 (457)
T ss_dssp ---------GGGGTTCSEEEECCSCHH
T ss_pred ---------ccccCCccEEEEcCCCHH
Confidence 111114889999998763
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.028 Score=53.23 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=30.7
Q ss_pred CCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~ 95 (351)
.++|.|||.|..|+..|..|++. |++|+++|+++
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~ 44 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT 44 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 46899999999999999999998 79999999754
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.029 Score=48.15 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=31.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~ 95 (351)
..+|+|||+|-.|..+|..|++.|. +++|+|++.
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 3689999999999999999999998 799999865
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.034 Score=49.48 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=31.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
..+|+|||+|..|.+.|..|++.|+ +|+++|.++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~ 39 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG 39 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence 3689999999999999999999998 9999998654
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.028 Score=50.10 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=32.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..++|.|||.|..|...|..|.+.|++|+++|+++.
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~ 65 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA 65 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence 346899999999999999999999999999998653
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.029 Score=50.93 Aligned_cols=34 Identities=35% Similarity=0.377 Sum_probs=31.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc-eEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~ 94 (351)
...+|||+|+|.+|..+|..|...|. +|+++|++
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 45799999999999999999999998 79999987
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.028 Score=53.15 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=31.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.++|.|||+|..|+..|..|++.|++|+++|.++
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3789999999999999999999999999999764
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.034 Score=48.52 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=30.7
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+|.|||+|..|.+.|..|.+.|++|+++++++.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~ 34 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence 699999999999999999999999999998754
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.033 Score=49.98 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=30.4
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
++|.|||+|..|.+.|..|++.|++|++++++
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 68999999999999999999999999999984
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.035 Score=50.31 Aligned_cols=35 Identities=23% Similarity=0.166 Sum_probs=32.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++|.|||+|.-|.+.|..|++.|++|+++++++.
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~ 63 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESD 63 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998654
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.043 Score=49.08 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=31.4
Q ss_pred CcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
.+|+|||+|..|.+.|..|+..|+ +|+++|.+..
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~ 49 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG 49 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence 589999999999999999999998 9999998754
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.031 Score=51.71 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=32.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|+|||.|..|..+|..|.+.|++|++||.++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~ 38 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD 38 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence 36899999999999999999999999999997754
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.042 Score=51.73 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=32.0
Q ss_pred CcEEEECCchhHHHHHHhhhcc-Cc-eEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS-LY-DVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~-g~-~v~vie~~~~ 96 (351)
++|.|||+|..|+..|..|++. |+ +|+++|.++.
T Consensus 19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 6899999999999999999999 99 9999998765
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.036 Score=50.00 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=31.3
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||+|..|...|..|++.|++|+++++++.
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~ 38 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ 38 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6899999999999999999999999999998643
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.042 Score=49.89 Aligned_cols=34 Identities=24% Similarity=0.140 Sum_probs=31.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+|+|+|+|.+|+.+|..|+..|.+|+++|+++
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 200 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3789999999999999999999999999999864
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.05 Score=48.12 Aligned_cols=36 Identities=17% Similarity=0.023 Sum_probs=32.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+.++|.|||.|..|...|..|.+.|++|+++|+++.
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 43 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG 43 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 346899999999999999999999999999998753
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.025 Score=49.73 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=30.9
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
++|+|||+|..|.+.|..|++.|.+|++++++.
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 689999999999999999999999999999874
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.041 Score=48.74 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=30.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+++|+|||+|..|.+.|..|+ .|.+|+++++.+
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence 368999999999999999999 999999999875
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.037 Score=52.00 Aligned_cols=34 Identities=9% Similarity=0.005 Sum_probs=31.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.++|+|||+|..|...|..|.+.|.+|+|++++.
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~ 45 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence 4789999999999999999999999999999864
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.045 Score=48.14 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=32.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++|.|||.|..|...|..|++.|++|+++|+++.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998664
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.057 Score=50.47 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=33.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...+|.|||+|.-|...|..|++.|++|+++|.++.
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e 88 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ 88 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence 346899999999999999999999999999998765
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.044 Score=50.82 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=30.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++|.|||.|..|+..|..|++ |++|+++|.++.
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~ 69 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA 69 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence 3689999999999999999998 999999998654
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.055 Score=48.28 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=31.0
Q ss_pred CcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
.+|+|||+|..|...|..|+..|+ +|+++|.++.
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~ 39 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN 39 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence 589999999999999999999888 9999997654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.051 Score=47.18 Aligned_cols=35 Identities=11% Similarity=0.289 Sum_probs=31.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+++|+|+|+|..|-..+..|.+.|++|+++.+++.
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~ 39 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD 39 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence 46899999999999999999999999999998653
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.053 Score=48.16 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=30.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~ 94 (351)
..+|.|||+|..|.+.|..|+..|+ +|+++|..
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 4689999999999999999999999 99999986
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.035 Score=46.93 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=30.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|+|||+|..|...|..|.+.|+ |+++|+++.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~ 42 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV 42 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence 4689999999999999999999999 999998654
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.052 Score=48.12 Aligned_cols=34 Identities=15% Similarity=0.359 Sum_probs=30.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
++|+|||+|..|...|..|+..|+ +|+++|.++.
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~ 37 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG 37 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCcc
Confidence 589999999999999999999886 8999997653
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.045 Score=48.33 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=32.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++|.|||.|..|...|..|++.|++|+++|+++.
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~ 41 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQ 41 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 46899999999999999999999999999998653
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.05 Score=48.75 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=31.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+.++|.|||+|.-|.+.|..|.+.|++|+++++.+
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~ 47 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK 47 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 45799999999999999999999999999999864
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.051 Score=49.46 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=31.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+|+|+|+|..|+.+|..|+..|.+|+++|+++
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~ 199 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH 199 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4789999999999999999999999999999864
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.047 Score=46.56 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..++|.|||+|..|.+.|..|.+.|++|+++++++.
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~ 53 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK 53 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 457899999999999999999999999999998654
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.059 Score=50.21 Aligned_cols=60 Identities=27% Similarity=0.380 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeC-----------------C---eEEecCCcEE--eccEEEEecCCCCccccc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS-----------------Q---KLILNDGTEV--PYGLLVWSTGVGPSTLVK 340 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~-----------------~---~v~~~~g~~~--~~D~vi~a~G~~p~~~~~ 340 (351)
..+...+.+.+++.|++++.+. |+++.. + +|.+.+| ++ .||.||+|+|.+...++.
T Consensus 181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~~l~~ 259 (448)
T 3axb_A 181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSNRLLN 259 (448)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHHHHHG
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHHHHHH
Confidence 4778888889999999999984 888853 2 3556677 68 999999999987666666
Q ss_pred cCCC
Q 018704 341 SLDL 344 (351)
Q Consensus 341 ~~gl 344 (351)
.+|+
T Consensus 260 ~~g~ 263 (448)
T 3axb_A 260 PLGI 263 (448)
T ss_dssp GGTC
T ss_pred HcCC
Confidence 6554
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.055 Score=49.40 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=32.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...+|+|||+|..|+.+|..++..|.+|+++|+...
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~ 202 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINID 202 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 357899999999999999999999999999998653
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.046 Score=48.97 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=30.6
Q ss_pred CCCCCCcEEEECC-chhHHHHHHhhhccCceEEEEcCCCc
Q 018704 58 KANEKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 58 ~~~~~~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+....++|+|.|| |..|...+..|.+.|++|+++++...
T Consensus 15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~ 54 (347)
T 4id9_A 15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS 54 (347)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 3345678999998 99999999999999999999998653
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.061 Score=50.59 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=32.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~ 71 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK 71 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 46899999999999999999999999999998754
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.042 Score=51.28 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=30.1
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+|.|||+|..|+..|..|++.|++|+++|+++
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999764
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.055 Score=47.86 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=30.3
Q ss_pred CcEEEECCchhHHHHHHhhhccCc--eEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~ 95 (351)
++|+|||+|..|.+.|..|+..|+ +|+++|.+.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 379999999999999999999998 999999865
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.056 Score=47.45 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=31.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+++|.|||+|.-|-..|..|+ .|++|+++|+++.
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~ 45 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEK 45 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHH
Confidence 3578999999999999999999 9999999998754
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.094 Score=49.55 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=31.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+++|||||||++||+||.+|++.|++|+|+|+++..
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~ 36 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP 36 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence 368999999999999999999999999999998775
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.066 Score=47.75 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=31.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
..+|+|||+|..|.+.|..|+..|+ +++++|..+.
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~ 42 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG 42 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 4689999999999999999999888 9999998664
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.063 Score=46.92 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=31.5
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||.|..|...|..|.+.|++|+++|+++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~ 35 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE 35 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 5799999999999999999999999999998654
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=93.65 E-value=0.092 Score=47.88 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=32.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..++|.|||+|.-|..+|..+++.|++|+++|+.+.
T Consensus 11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~ 46 (377)
T 3orq_A 11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED 46 (377)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 347899999999999999999999999999997654
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.043 Score=48.57 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=29.4
Q ss_pred CcEEEECCchhHHHHHHhhhcc-----C-ceEEEEcC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS-----L-YDVVCVSP 93 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~-----g-~~v~vie~ 93 (351)
++|.|||+|..|...|..|.+. | ++|+++++
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence 5899999999999999999998 9 99999998
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.059 Score=44.96 Aligned_cols=34 Identities=32% Similarity=0.314 Sum_probs=30.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.++|.|||+|..|.+.|..|.+.|++|++++++.
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3689999999999999999999999999999854
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.056 Score=49.85 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=29.1
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+|.|||+|..|+..|..|++ |++|+++|+++
T Consensus 2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~ 32 (402)
T 1dlj_A 2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP 32 (402)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence 69999999999999999999 99999999764
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.068 Score=49.92 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=31.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++.|||.|..|+..|..|++.|++|+++|.++.
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~ 42 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR 42 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 6899999999999999999999999999997754
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.54 E-value=0.067 Score=47.60 Aligned_cols=34 Identities=15% Similarity=0.362 Sum_probs=30.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~ 95 (351)
+.+|+|||+|..|.+.|..|...+. +++++|.+.
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4689999999999999999999887 899999764
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.052 Score=50.45 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=30.3
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
++|+|||||++|+-+|..|++.| .+|+++++..
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G--------------~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHD--------------VDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTT--------------CEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--------------CeEEEEcCCC
Confidence 48999999999999999999887 9999999863
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.068 Score=47.54 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=31.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccC-ceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~ 95 (351)
.++|.|||.|..|...|..|++.| ++|+++|+++
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 468999999999999999999999 9999999865
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.073 Score=48.28 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=30.4
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+|.|||+|..|.+.|..|.+.|++|+++++++
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~ 48 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 48 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 89999999999999999999999999999865
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.077 Score=47.36 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=30.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~ 95 (351)
..+|+|||+|..|.+.|..|+..|+ +++++|...
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~ 40 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK 40 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence 4689999999999999999999887 899999854
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.046 Score=45.83 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=31.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEE-EcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVC-VSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~v-ie~~~~ 96 (351)
.++|.|||+|..|.+.|..|.+.|++|++ +++++.
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~ 58 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA 58 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence 36899999999999999999999999998 887654
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.08 Score=45.90 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=31.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.++++|+|+|-+|.++|..|.+.|.+|++++++.
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~ 152 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 152 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence 4689999999999999999999999999998854
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.062 Score=47.80 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=29.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..++|+|||+|..|.+.|..|++.|++|+++ +++
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~ 51 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP 51 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence 4578999999999999999999999999999 654
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.076 Score=44.67 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=31.7
Q ss_pred CCCcEEEECC-chhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+.++|+|.|| |..|...|..|.+.|++|++++++..
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 56 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE 56 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence 3578999997 99999999999999999999998643
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.078 Score=46.03 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=31.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+++|+|.|+|..|...+..|.+.|++|+++++...
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~ 37 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ 37 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 36899999999999999999999999999998653
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.062 Score=46.98 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=31.4
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||.|..|...|..|.+.|++|+++|+++.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~ 35 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA 35 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 4799999999999999999999999999998754
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.071 Score=49.99 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=32.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+.|+|+|+|..|.++|..|+..|.+|+++|+++
T Consensus 264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~ 298 (488)
T 3ond_A 264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP 298 (488)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 35789999999999999999999999999999865
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.059 Score=48.86 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=30.5
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 278 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 278 (351)
.+|+|||||.+|+-+|..|++.| .+|+++++...
T Consensus 18 ~dvvIIGgG~~Gl~~A~~La~~G--------------~~V~llE~~~~ 51 (382)
T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAKEN--------------KNTALFESGTM 51 (382)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSST
T ss_pred CCEEEECcCHHHHHHHHHHHhCC--------------CcEEEEeCCCC
Confidence 48999999999999999999876 89999999643
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.086 Score=46.73 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=29.7
Q ss_pred cEEEECCchhHHHHHHhhhc--cCceEEEEcCCCc
Q 018704 64 RVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~~~ 96 (351)
+|+|||+|..|.+.|..|++ .+.+|+++|.++.
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~ 36 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG 36 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence 79999999999999999988 4789999998754
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.097 Score=46.61 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=31.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
..+|+|||+|..|.+.|..|+..++ +++++|..+.
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~ 40 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG 40 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence 3689999999999999999998887 9999998664
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.092 Score=46.61 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=31.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~ 96 (351)
.++|.|||.|..|-+.|..|.+.|+ +|+++|+++.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~ 69 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE 69 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHH
Confidence 4689999999999999999999999 9999998653
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.05 E-value=0.068 Score=46.88 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=31.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||+|..|...|..|.+.|++|+++|+++.
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~ 39 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE 39 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 5899999999999999999999999999998643
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.21 Score=44.25 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=46.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEEEe
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~v~ 310 (351)
.+|+|||+|..|.-+|..|++.| .+|+++ ++ ++.. +.+.+.|+++.........
T Consensus 20 ~kI~IiGaGa~G~~~a~~L~~~G--------------~~V~l~-~~-------~~~~----~~i~~~g~~~~~~~~~~~~ 73 (318)
T 3hwr_A 20 MKVAIMGAGAVGCYYGGMLARAG--------------HEVILI-AR-------PQHV----QAIEATGLRLETQSFDEQV 73 (318)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT--------------CEEEEE-CC-------HHHH----HHHHHHCEEEECSSCEEEE
T ss_pred CcEEEECcCHHHHHHHHHHHHCC--------------CeEEEE-Ec-------HhHH----HHHHhCCeEEEcCCCcEEE
Confidence 39999999999999999998866 789998 53 1222 3344456665432111100
Q ss_pred CCeEEecCCcE-EeccEEEEecCCC
Q 018704 311 SQKLILNDGTE-VPYGLLVWSTGVG 334 (351)
Q Consensus 311 ~~~v~~~~g~~-~~~D~vi~a~G~~ 334 (351)
.-.+ ..+-.. -.+|.||+|+-..
T Consensus 74 ~~~~-~~~~~~~~~~D~vilavk~~ 97 (318)
T 3hwr_A 74 KVSA-SSDPSAVQGADLVLFCVKST 97 (318)
T ss_dssp CCEE-ESCGGGGTTCSEEEECCCGG
T ss_pred eeee-eCCHHHcCCCCEEEEEcccc
Confidence 1111 122122 2589999998654
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.085 Score=48.59 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=29.5
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
+|+|||||.+|+-+|..|++.| .+|+++++++
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G--------------~~V~vlE~~~ 33 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKAG--------------HEVEVFERLP 33 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHTT--------------CEEEEECSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CceEEEeCCC
Confidence 7999999999999999999877 8999999964
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.1 Score=45.96 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=31.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~ 95 (351)
.++|+|||+|-+|.++|..|.+.|. +|+|+++..
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~ 175 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV 175 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 4689999999999999999999998 899999864
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.1 Score=45.12 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=31.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++++|||+|-+|-++|..|.+.|.+|+|+.|...
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ 152 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR 152 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 57999999999999999999999988999998643
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.096 Score=43.32 Aligned_cols=33 Identities=33% Similarity=0.369 Sum_probs=30.2
Q ss_pred cEEEEC-CchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 64 RVVVLG-SGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 64 ~VvIIG-~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+|+||| +|..|...|..|.+.|++|+++++++.
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~ 35 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE 35 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 699999 999999999999999999999998643
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=92.89 E-value=0.075 Score=50.03 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=30.5
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~ 95 (351)
++|.|||.|..|+..|..|++. |++|+++|+++
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~ 40 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE 40 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 5899999999999999999998 89999999764
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.079 Score=46.99 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=30.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~ 94 (351)
.++|.|||.|..|...|..|.+.|+ +|+++|++
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 4689999999999999999999999 99999996
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.088 Score=48.52 Aligned_cols=35 Identities=20% Similarity=0.063 Sum_probs=32.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+.|+|||.|..|..+|..|+..|.+|+++|+++
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp 253 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP 253 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 34789999999999999999999999999999865
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.096 Score=45.96 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=31.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..++|.|||+|..|..+|..|...|.+|+++|+..
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~ 188 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES 188 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 35789999999999999999999999999999854
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.13 Score=40.36 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=30.2
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
...++|+|+|+|.+|..++..|...+ .+|++++++
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g--------------~~V~vid~~ 51 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSG--------------HSVVVVDKN 51 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence 34469999999999999999998776 789999885
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.12 Score=45.86 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=31.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|.|||+|..|...|..|.+.|++|+++|+++.
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~ 64 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE 64 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 36899999999999999999999999999998654
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.1 Score=49.25 Aligned_cols=34 Identities=35% Similarity=0.426 Sum_probs=30.4
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.++|+|||||.+|+.+|..|.+.| .+|+++++..
T Consensus 33 ~~~v~IiGaG~~Gl~aA~~l~~~g--------------~~v~vlE~~~ 66 (498)
T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLAGAG--------------HQVTVLEASE 66 (498)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHT--------------CEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECCC
Confidence 358999999999999999999877 8999999863
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.096 Score=46.14 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=31.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..++|.|||+|..|..+|..|...|.+|+++|+..
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~ 190 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS 190 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35789999999999999999999999999999854
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=92.77 E-value=0.09 Score=47.62 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=32.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++|.|||.|..|...|..|.+.|++|+++|+++.
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~ 56 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVN 56 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 47899999999999999999999999999998653
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=92.76 E-value=0.11 Score=46.49 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=31.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCC
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~ 95 (351)
....+|+|||+|..|.++|..|...|+ +++|+|...
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~ 54 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIE 54 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence 345799999999999999999998887 899999854
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=92.76 E-value=0.092 Score=46.36 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=30.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~ 95 (351)
..+|+|||+|..|.+.|..|...|+ +++|+|.++
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 3689999999999999999998888 899999865
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.094 Score=46.77 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=30.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~ 95 (351)
...+|+|||+|..|.++|..|...++ +++++|...
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~ 44 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK 44 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence 34689999999999999999998877 899999854
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.27 Score=45.27 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=32.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+||+|||||++||+||+.|++.|++|+|+|+++..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI 35 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 48999999999999999999999999999998764
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.095 Score=46.59 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=30.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~ 95 (351)
+.+|+|||+|..|.+.|..|...++ +++++|.++
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~ 41 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT 41 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4699999999999999999998775 799999754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.21 Score=38.38 Aligned_cols=75 Identities=24% Similarity=0.270 Sum_probs=47.3
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEEEe
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~v~ 310 (351)
++++|+|.|..|..+|..|...+ .+|++++++ ++..+ .+++.|+.++.+...+.+
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g--------------~~v~vid~~-------~~~~~----~~~~~g~~~i~gd~~~~~ 62 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASD--------------IPLVVIETS-------RTRVD----ELRERGVRAVLGNAANEE 62 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESC-------HHHHH----HHHHTTCEEEESCTTSHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECC-------HHHHH----HHHHcCCCEEECCCCCHH
Confidence 48999999999999999998876 899999985 22222 334467777665211100
Q ss_pred CCeEEecCCcEEeccEEEEecCCC
Q 018704 311 SQKLILNDGTEVPYGLLVWSTGVG 334 (351)
Q Consensus 311 ~~~v~~~~g~~~~~D~vi~a~G~~ 334 (351)
.+..-..-.+|.||.+++..
T Consensus 63 ----~l~~a~i~~ad~vi~~~~~~ 82 (140)
T 3fwz_A 63 ----IMQLAHLECAKWLILTIPNG 82 (140)
T ss_dssp ----HHHHTTGGGCSEEEECCSCH
T ss_pred ----HHHhcCcccCCEEEEECCCh
Confidence 00000012477777777643
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.67 E-value=0.085 Score=47.05 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=29.0
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcC
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
+|.|||+|..|.+.|..|.+.|++|+++++
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence 699999999999999999999999999998
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.65 E-value=0.15 Score=44.74 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=31.9
Q ss_pred CCcEEEEC-CchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLG-SGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG-~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|.||| +|..|.+.|..|++.|++|+++++++.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~ 56 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW 56 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence 35799999 999999999999999999999998754
|
| >2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A | Back alignment and structure |
|---|
Probab=92.62 E-value=0.12 Score=47.20 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=33.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.++++|+|+|..|.+.|..++..|++|+++|+++.+
T Consensus 204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~ 239 (386)
T 2we8_A 204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVF 239 (386)
T ss_dssp CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh
Confidence 479999999999999999999999999999998764
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=92.59 E-value=0.11 Score=49.28 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred hcccCeEEEECCChHHHH-HHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe
Q 018704 227 KSRLLHCVVVGGGPTGVE-FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI 305 (351)
Q Consensus 227 ~~~~~~v~VvGgG~~a~e-~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~ 305 (351)
..+.++|.|||-|-+|+- +|..|.+.| .+|+..+.... ...+.|++.||+++.|.
T Consensus 19 ~~~~~~v~viGiG~sG~s~~A~~l~~~G--------------~~V~~~D~~~~----------~~~~~l~~~gi~~~~g~ 74 (494)
T 4hv4_A 19 MRRVRHIHFVGIGGAGMGGIAEVLANEG--------------YQISGSDLAPN----------SVTQHLTALGAQIYFHH 74 (494)
T ss_dssp ---CCEEEEETTTSTTHHHHHHHHHHTT--------------CEEEEECSSCC----------HHHHHHHHTTCEEESSC
T ss_pred hccCCEEEEEEEcHhhHHHHHHHHHhCC--------------CeEEEEECCCC----------HHHHHHHHCCCEEECCC
Q ss_pred -EEEEeCCeEEecCCcEEeccEEEEecCCCCc-cccc
Q 018704 306 -VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVK 340 (351)
Q Consensus 306 -v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~ 340 (351)
...+. .+|.||+++|..++ +.+.
T Consensus 75 ~~~~~~------------~~d~vV~Spgi~~~~p~~~ 99 (494)
T 4hv4_A 75 RPENVL------------DASVVVVSTAISADNPEIV 99 (494)
T ss_dssp CGGGGT------------TCSEEEECTTSCTTCHHHH
T ss_pred CHHHcC------------CCCEEEECCCCCCCCHHHH
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.19 Score=44.38 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=46.1
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEEEeC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS 311 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~v~~ 311 (351)
+|+|||+|.+|.-+|..|. .+ .+|+++.|+. +-. +.+++.|+++.........
T Consensus 4 kI~IiGaGa~G~~~a~~L~-~g--------------~~V~~~~r~~-------~~~----~~l~~~G~~~~~~~~~~~~- 56 (307)
T 3ego_A 4 KIGIIGGGSVGLLCAYYLS-LY--------------HDVTVVTRRQ-------EQA----AAIQSEGIRLYKGGEEFRA- 56 (307)
T ss_dssp EEEEECCSHHHHHHHHHHH-TT--------------SEEEEECSCH-------HHH----HHHHHHCEEEEETTEEEEE-
T ss_pred EEEEECCCHHHHHHHHHHh-cC--------------CceEEEECCH-------HHH----HHHHhCCceEecCCCeecc-
Confidence 8999999999999999988 65 8999998841 211 3345567776532111111
Q ss_pred CeEEecCCcEEeccEEEEecCC
Q 018704 312 QKLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 312 ~~v~~~~g~~~~~D~vi~a~G~ 333 (351)
.+.......-++|.||+|+-.
T Consensus 57 -~~~~~~~~~~~~D~vilavK~ 77 (307)
T 3ego_A 57 -DCSADTSINSDFDLLVVTVKQ 77 (307)
T ss_dssp -CCEEESSCCSCCSEEEECCCG
T ss_pred -cccccccccCCCCEEEEEeCH
Confidence 111111112358999999753
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.55 E-value=0.094 Score=46.68 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=30.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCc--eEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~ 95 (351)
++|+|||+|..|.+.|..|.+.|+ +|+++|+++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~ 35 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence 369999999999999999999998 999999864
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.14 Score=44.63 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=31.4
Q ss_pred CcEEEECC-chhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||+ |..|.+.|..|.+.|++|+++++++.
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~ 46 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPE 46 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 58999999 99999999999999999999998653
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.11 Score=46.39 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=30.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~ 95 (351)
.+.+|+|||+|..|.+.|..|...+. +++++|.+.
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~ 44 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK 44 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence 44799999999999999999988665 799999854
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.14 Score=46.77 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=32.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..++|+|||+|..|..+|..+++.|++|+++|+.+.
T Consensus 13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~ 48 (389)
T 3q2o_A 13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN 48 (389)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence 346899999999999999999999999999997653
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=92.50 E-value=0.16 Score=45.31 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=31.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~ 96 (351)
...+|.|||+|..|.++|..|+..|+ +++++|....
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~ 57 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMED 57 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHH
Confidence 34789999999999999999999887 8999998543
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.11 Score=46.25 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=31.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccC----ceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL----YDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g----~~v~vie~~~ 95 (351)
.++|.|||+|..|.+.|..|.+.| ++|++++++.
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~ 59 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM 59 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence 358999999999999999999999 7999999875
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.14 Score=41.63 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=30.6
Q ss_pred CcEEEECC-chhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
++|+|+|| |..|...+..|.+.|++|+++++++
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence 57999998 9999999999999999999999864
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.11 Score=49.25 Aligned_cols=32 Identities=28% Similarity=0.538 Sum_probs=28.5
Q ss_pred eEEEECCChHHHHHHHHHHHH-HHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.|+|||||.+|+-+|..|++. | .+|+++++++
T Consensus 12 DVvIIGaGisGLsaA~~L~k~~G--------------~~V~VlE~~~ 44 (513)
T 4gde_A 12 DVLVIGAGPTGLGAAKRLNQIDG--------------PSWMIVDSNE 44 (513)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCC--------------SCEEEEESSS
T ss_pred CEEEECCcHHHHHHHHHHHhhCC--------------CCEEEEECCC
Confidence 799999999999999999864 4 8899999864
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.12 Score=42.59 Aligned_cols=32 Identities=19% Similarity=0.440 Sum_probs=29.7
Q ss_pred cEEEECC-chhHHHHHHhhhccCceEEEEcCCC
Q 018704 64 RVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 64 ~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+|+|+|| |..|...+..|.+.|++|+++.+++
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA 34 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence 6999995 9999999999999999999999865
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.098 Score=45.90 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=31.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++|.|||+|..|...|..|.+.|++|+++|+++.
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~ 38 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEA 38 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 36899999999999999999999999999998643
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.094 Score=48.24 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=28.2
Q ss_pred CcEEEECCchhHHHHHHhhhc-cCceEEEEc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDT-SLYDVVCVS 92 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie 92 (351)
++|.|||+|..|.+.|..|++ .|++|++++
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~ 33 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT 33 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence 579999999999999999988 599999999
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 351 | ||||
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 2e-10 | |
| d1xhca2 | 122 | c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas | 3e-07 | |
| d1d7ya2 | 121 | c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu | 5e-07 | |
| d1feca2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Crith | 7e-06 | |
| d1q1ra2 | 133 | c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud | 3e-04 | |
| d1gesa2 | 116 | c.3.1.5 (A:147-262) Glutathione reductase {Escheri | 3e-04 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 6e-04 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 7e-04 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 0.004 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 0.003 | |
| d1mo9a2 | 121 | c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co | 0.003 |
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.9 bits (134), Expect = 2e-10
Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 34/151 (22%)
Query: 190 VKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGEL 249
VK T R++ + + + E + ++GGG G E + L
Sbjct: 14 VKSRTTLFRKIGDFRSLEKIS--------------REVKSI---TIIGGGFLGSELACAL 56
Query: 250 SDFIMRDVRQRYSHVKDYIHVTLIEANEILSS--FDDRLRHYATTQLSKSGVRL-----V 302
V + + + L ++ ++ + GV++ V
Sbjct: 57 GRKAR----------ALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIV 106
Query: 303 RGIVKDVDSQKLILNDGTEVPYGLLVWSTGV 333
+ + + L DG +V +V + G+
Sbjct: 107 QSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 137
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 46.6 bits (110), Expect = 3e-07
Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 33/144 (22%)
Query: 191 KENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELS 250
KE LR + A I+ + +++GGG G+E +
Sbjct: 10 KEYLLTLRTIFDADRIKESI-----------------ENSGEAIIIGGGFIGLELA---- 48
Query: 251 DFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309
+ + HV LI + D+ L + L ++GV+ + +
Sbjct: 49 ----------GNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEA 98
Query: 310 DSQKLILNDGTEVPYGLLVWSTGV 333
+ + +L + + + + + G+
Sbjct: 99 NEEG-VLTNSGFIEGKVKICAIGI 121
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 45.9 bits (108), Expect = 5e-07
Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 34/149 (22%)
Query: 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 246
+ G LR + A+ I+ L +SRL ++VGGG G+E +
Sbjct: 4 LQGATMPVHTLRTLEDARRIQAGL--------------RPQSRL---LIVGGGVIGLELA 46
Query: 247 GELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG 304
+ +HV+L+E + + L + + GV L
Sbjct: 47 --------------ATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFE 92
Query: 305 I-VKDVDSQKLILNDGTEVPYGLLVWSTG 332
V ++L+DGT + ++V G
Sbjct: 93 RSVTGSVDGVVLLDDGTRIAADMVVVGIG 121
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 42.5 bits (99), Expect = 7e-06
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
+ VGGG +EF+G + + R + ++ D I ++LR
Sbjct: 20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQ--LTEQLRANGI 77
Query: 292 TQLSKSGVRLVRGIVKDVDSQK-LILNDGTEVPYGLLVWSTG 332
+ + K+ D + ++ G E Y +++ + G
Sbjct: 78 NVRTHEN---PAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 38.4 bits (88), Expect = 3e-04
Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 21/147 (14%)
Query: 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 245
G G N +LR + A+ IRR+L +RL VV+GGG G+E
Sbjct: 8 GAVGKANNFRYLRTLEDAECIRRQL--------------IADNRL---VVIGGGYIGLEV 50
Query: 246 SGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI 305
+ M + + + ++ R + + V
Sbjct: 51 AATAIKANMHVTLLDTAARVLERVTA----PPVSAFYEHLHREAGVDIRTGTQVCGFEMS 106
Query: 306 VKDVDSQKLILNDGTEVPYGLLVWSTG 332
++ DGT +P L++ G
Sbjct: 107 TDQQKVTAVLCEDGTRLPADLVIAGIG 133
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 37.8 bits (87), Expect = 3e-04
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 19/107 (17%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
VVG G GVE G + + + + L SFD +
Sbjct: 23 RVAVVGAGYIGVELGGVI-NGLGAKTHLFEMF------------DAPLPSFDPMISETLV 69
Query: 292 TQLSKSGVRL-----VRGIVKDVDSQ-KLILNDGTEVPYGLLVWSTG 332
++ G +L + +VK+ D L L DG L+W+ G
Sbjct: 70 EVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 37.8 bits (86), Expect = 6e-04
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 1/117 (0%)
Query: 234 VVVGGGPTGVEFSGELSDFIMR-DVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292
VV+G G V F EL + + + + + + +++R
Sbjct: 7 VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKR 66
Query: 293 QLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPG 349
+ V D + + L+DG +PYG LV +TG P ++ + L ++ G
Sbjct: 67 APEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAG 123
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 37.9 bits (86), Expect = 7e-04
Identities = 26/128 (20%), Positives = 36/128 (28%), Gaps = 18/128 (14%)
Query: 63 PRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
+VVV+G G G K I + V + P L G +
Sbjct: 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLE-----S 57
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
+ R G GID D +V + YD+ V+A G
Sbjct: 58 IKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAE-----------FGYDRCVVAPGI 106
Query: 181 EASTFGIH 188
E I
Sbjct: 107 ELIYDKIE 114
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 35.5 bits (80), Expect = 0.004
Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 25/115 (21%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-------------ILS 280
VVVGGG G + + + ++ VTLIE N
Sbjct: 6 VVVGGGTGGATAAKYI--------KLADPSIE----VTLIEPNTDYYTCYLSNEVIGGDR 53
Query: 281 SFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335
+ Y + V D D + + G E Y V + G+
Sbjct: 54 KLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIEL 108
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 35.9 bits (81), Expect = 0.003
Identities = 22/112 (19%), Positives = 38/112 (33%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG GP G E + +LS V + + + +
Sbjct: 4 VIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYR 63
Query: 294 LSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345
+RL +K+++ + EVPY LV +TG L + +
Sbjct: 64 KRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIH 115
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 35.0 bits (79), Expect = 0.003
Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 11/105 (10%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDV----RQRYSHVKDYIHVTLIEANEILSSFDDRLR 287
VVVGG T VE+ + R V + +KD + +
Sbjct: 24 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISG 83
Query: 288 HYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTG 332
T++ + V+ +V N + + G
Sbjct: 84 S-NVTRIEEDANGRVQAVVAMTP------NGEMRIETDFVFLGLG 121
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 351 | |||
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.85 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.83 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.74 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.74 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.72 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.7 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.69 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.69 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.69 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.68 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.66 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.65 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.63 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.63 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.62 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.61 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.59 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.58 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.56 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.55 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.53 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.51 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.36 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.36 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.33 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.31 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.31 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.3 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.3 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.29 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.27 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.27 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.26 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 99.25 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.23 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.21 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.21 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.21 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.19 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 99.18 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.17 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.16 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 99.15 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.14 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.1 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.1 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.09 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.07 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.06 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.05 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.04 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.04 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.03 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.03 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.03 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.0 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.0 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.99 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.99 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.99 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.98 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.98 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 98.96 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.96 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.93 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.91 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.91 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.9 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.9 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.9 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 98.89 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.89 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.88 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.86 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.86 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 98.86 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.84 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.84 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.81 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.8 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.8 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.79 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 98.79 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.77 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.77 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.76 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 98.72 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.71 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.67 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.67 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.66 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.65 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.64 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.63 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.63 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.63 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.63 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 98.63 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.62 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.61 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 98.6 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.6 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.56 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.55 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.55 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.55 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.53 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.5 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.49 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.49 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.49 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.41 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 98.36 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 98.35 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.35 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 98.29 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.28 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.27 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.26 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.25 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.23 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.23 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 98.22 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.19 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 98.17 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.14 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.14 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.11 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 98.1 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.07 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.07 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.06 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.02 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 98.02 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 98.02 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.01 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.01 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 98.0 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 97.99 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.96 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 97.93 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 97.9 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.88 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.88 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.87 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.8 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.73 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.72 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.71 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 97.7 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 97.65 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.64 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 97.63 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 97.58 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.53 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.51 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 97.5 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.39 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 97.38 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.35 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.29 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.28 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 97.26 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.19 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 97.19 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.03 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.03 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.98 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 96.92 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.88 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.83 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 96.8 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 96.8 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 96.74 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.73 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.72 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.67 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.58 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 96.41 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.36 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 96.33 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.33 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 96.24 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.23 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 96.18 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.05 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 96.04 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.0 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.95 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.91 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 95.9 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 95.87 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 95.85 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 95.82 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.78 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.73 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 95.71 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.64 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 95.58 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 95.41 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.4 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 95.25 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 95.25 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.24 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 95.23 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 95.2 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 95.17 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 95.16 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.13 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 95.12 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 95.09 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.07 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.07 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.02 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 94.88 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 94.88 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.86 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 94.82 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.78 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 94.71 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 94.54 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.52 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 94.47 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 94.41 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 94.39 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.38 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.35 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.34 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 94.28 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 94.27 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.13 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 94.03 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.99 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 93.92 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 93.87 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 93.84 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.84 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 93.77 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 93.74 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 93.69 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 93.63 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 93.59 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.43 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 93.41 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 93.4 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 93.4 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 93.37 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.33 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.22 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 93.12 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 92.99 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.94 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 92.93 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.8 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 92.68 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 92.56 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.42 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 92.35 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 92.28 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 92.21 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 92.13 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 91.99 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 91.89 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 91.87 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 91.74 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.6 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 91.36 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 91.04 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.96 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 90.95 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 90.92 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 90.85 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 90.76 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 90.75 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 90.74 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 90.71 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 90.7 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 90.67 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 90.51 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 90.44 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 90.44 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 90.17 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 90.12 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 90.08 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 89.93 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 89.92 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 89.91 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 89.89 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 89.66 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 89.64 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 89.17 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 89.03 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 88.61 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 88.43 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 88.36 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 88.12 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 87.9 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 87.49 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 87.42 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 87.31 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 87.17 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 87.01 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 87.0 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 86.96 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 86.93 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 86.69 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 86.63 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 86.57 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 86.41 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 86.31 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 86.2 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 86.17 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 86.15 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 86.05 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 86.02 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 85.96 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 85.77 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 85.76 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 85.74 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 85.56 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 85.27 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 85.17 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 85.06 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 85.02 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 84.88 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 84.69 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 84.63 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 84.57 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 84.56 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 84.54 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 84.44 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 84.4 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 84.34 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 84.29 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 84.24 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 84.23 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 84.01 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 83.94 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 83.81 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 83.78 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 83.77 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 83.55 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 83.42 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 83.4 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 83.16 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 83.11 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 83.01 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 82.78 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 82.7 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 82.55 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 82.51 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 82.5 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 82.49 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 82.4 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 82.3 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 82.12 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 81.99 | |
| d1o0sa1 | 308 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 81.6 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 81.51 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 81.33 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 81.24 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 81.2 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 81.15 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 81.11 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 81.01 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 80.85 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 80.68 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 80.59 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 80.54 | |
| d1gq2a1 | 298 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 80.3 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 80.28 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 80.25 |
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.85 E-value=1.2e-20 Score=143.97 Aligned_cols=118 Identities=24% Similarity=0.364 Sum_probs=106.8
Q ss_pred CCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcC
Q 018704 184 TFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (351)
Q Consensus 184 ~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~ 263 (351)
.|++||.+..++++++++++..+++.+ ...++++|||||.+|+|+|..|.+.+
T Consensus 1 iP~ipG~~~~v~~lrtl~Da~~l~~~~-----------------~~~~~vvIIGgG~iG~E~A~~l~~~g---------- 53 (121)
T d1d7ya2 1 LPTLQGATMPVHTLRTLEDARRIQAGL-----------------RPQSRLLIVGGGVIGLELAATARTAG---------- 53 (121)
T ss_dssp CGGGTTCSSCEEECCSHHHHHHHHHHC-----------------CTTCEEEEECCSHHHHHHHHHHHHTT----------
T ss_pred CccCCCCCCCEEEeCCHHHHHHHHHhh-----------------hcCCeEEEECcchhHHHHHHHhhccc----------
Confidence 478899876788999999999988875 34579999999999999999999877
Q ss_pred CCCccEEEEEeCCC-CCC-CCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecC
Q 018704 264 VKDYIHVTLIEANE-ILS-SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTG 332 (351)
Q Consensus 264 ~~~~~~v~~~~~~~-~l~-~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G 332 (351)
.+|+++++.+ +++ .+++++.+.+.+.++++||+++++. |+++..+.++++||++++||.||+|+|
T Consensus 54 ----~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 54 ----VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp ----CEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSC
T ss_pred ----ceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEEEECCCCEEECCEEEEeeC
Confidence 9999999984 665 6799999999999999999999995 999999999999999999999999998
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.83 E-value=2.7e-20 Score=142.63 Aligned_cols=120 Identities=21% Similarity=0.388 Sum_probs=106.3
Q ss_pred CcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhh
Q 018704 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (351)
Q Consensus 181 ~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~ 260 (351)
+|+.|+|||. +++++++++.++..+.+.+. ..++++|||||++|+|+|..|.++|
T Consensus 1 R~r~p~ipG~-e~~~t~~~~~d~~~l~~~~~-----------------~~~~vvIiGgG~iG~E~A~~l~~~g------- 55 (122)
T d1xhca2 1 RAREPQIKGK-EYLLTLRTIFDADRIKESIE-----------------NSGEAIIIGGGFIGLELAGNLAEAG------- 55 (122)
T ss_dssp EECCCCSBTG-GGEECCCSHHHHHHHHHHHH-----------------HHSEEEEEECSHHHHHHHHHHHHTT-------
T ss_pred CCCCcCCCCc-cceEccCCHHHHHHHHHHhh-----------------cCCcEEEECCcHHHHHHHHHhhccc-------
Confidence 3788999997 68899999999999988763 3469999999999999999999887
Q ss_pred hcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCC
Q 018704 261 YSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 261 ~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~ 333 (351)
.+|+++++.+.+..+++++.+.+.+.++++||+++++. +.+++.+++. .+++++++|.||+|+|.
T Consensus 56 -------~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~v~-~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 56 -------YHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEGVL-TNSGFIEGKVKICAIGI 121 (122)
T ss_dssp -------CEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSSEEE-ETTEEEECSCEEEECCE
T ss_pred -------ceEEEEeccccccCCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEEE-eCCCEEECCEEEEEEEe
Confidence 99999999865556999999999999999999999995 9999988874 56778999999999994
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.2e-17 Score=126.37 Aligned_cols=88 Identities=28% Similarity=0.410 Sum_probs=80.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~ 308 (351)
++++|||||++|+|+|..|.++| .+|+++++. .+++.+++++.+.+.+.++++||+++++. |++
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G--------------~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~ 87 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLG--------------AKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKA 87 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEE
T ss_pred CEEEEECCChhhHHHHHHhhccc--------------cEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEE
Confidence 49999999999999999999988 899999997 58899999999999999999999999995 888
Q ss_pred EeCC-----eEEecCCcEEeccEEEEecC
Q 018704 309 VDSQ-----KLILNDGTEVPYGLLVWSTG 332 (351)
Q Consensus 309 v~~~-----~v~~~~g~~~~~D~vi~a~G 332 (351)
+..+ .+.+++|+++++|.||+|+|
T Consensus 88 i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 88 VVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp EEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred EEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 8642 47789999999999999998
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.74 E-value=2.4e-17 Score=126.00 Aligned_cols=116 Identities=20% Similarity=0.332 Sum_probs=100.2
Q ss_pred CCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 018704 187 IHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (351)
Q Consensus 187 i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~ 265 (351)
|||.+ ++++++++++++..+++.+. ....++++|||||++|+|+|..|+++|
T Consensus 1 IPG~d~~~v~~~~~~~da~~i~~~~~---------------~~~~k~vvViGgG~iG~E~A~~l~~~g------------ 53 (123)
T d1nhpa2 1 IPGKDLDNIYLMRGRQWAIKLKQKTV---------------DPEVNNVVVIGSGYIGIEAAEAFAKAG------------ 53 (123)
T ss_dssp STTTTSBSEECCCHHHHHHHHHHHHT---------------CTTCCEEEEECCSHHHHHHHHHHHHTT------------
T ss_pred CcCCCCCCeEEeCCHHHHHHHHHHhh---------------ccCCCEEEEECChHHHHHHHHHhhccc------------
Confidence 57776 78899999999999988752 134579999999999999999999887
Q ss_pred CccEEEEEeCC-CCCC-CCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC---eEEecCCcEEeccEEEEec
Q 018704 266 DYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ---KLILNDGTEVPYGLLVWST 331 (351)
Q Consensus 266 ~~~~v~~~~~~-~~l~-~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~---~v~~~~g~~~~~D~vi~a~ 331 (351)
.+||++++. ++++ .+++++.+.+.+.++++||++++++ +++++.+ ..++.||++++||.||+|+
T Consensus 54 --~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 54 --KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV 123 (123)
T ss_dssp --CEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred --eEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence 999999997 4665 5799999999999999999999995 9999865 3557899999999999985
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.72 E-value=2.7e-17 Score=124.40 Aligned_cols=87 Identities=18% Similarity=0.341 Sum_probs=78.5
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~ 308 (351)
++++|||||.+|+|+|..|+++| .+|++++|. ++++.+++++.+.+.+.++++||++++++ |++
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g--------------~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~ 88 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLG--------------IDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVE 88 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTT--------------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CEEEEECCchHHHHHHHHHHhcc--------------ccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEEE
Confidence 59999999999999999999887 999999996 58899999999999999999999999995 999
Q ss_pred EeC--C---eEEecCCcEEe-ccEEEEec
Q 018704 309 VDS--Q---KLILNDGTEVP-YGLLVWST 331 (351)
Q Consensus 309 v~~--~---~v~~~~g~~~~-~D~vi~a~ 331 (351)
++. + .+.+++|+.++ +|.||+|+
T Consensus 89 i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 89 IKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp EEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred EEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 863 2 47789998885 79999985
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.70 E-value=5.2e-17 Score=125.82 Aligned_cols=110 Identities=27% Similarity=0.438 Sum_probs=95.2
Q ss_pred ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 018704 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (351)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~ 271 (351)
++++++++++++..+++.+ ...++++|||||.+|+|+|..|.+.+ .+|+
T Consensus 14 ~~v~~lr~~~d~~~l~~~~-----------------~~~k~v~VIGgG~iG~E~A~~l~~~g--------------~~Vt 62 (133)
T d1q1ra2 14 NNFRYLRTLEDAECIRRQL-----------------IADNRLVVIGGGYIGLEVAATAIKAN--------------MHVT 62 (133)
T ss_dssp TTEEESSSHHHHHHHHHTC-----------------CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEE
T ss_pred CCeeEeCCHHHHHHHHHhh-----------------ccCCEEEEECCchHHHHHHHHHHhhC--------------ccee
Confidence 4667789999999888764 34579999999999999999999887 9999
Q ss_pred EEeCC-CCCC-CCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC-------eEEecCCcEEeccEEEEecC
Q 018704 272 LIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-------KLILNDGTEVPYGLLVWSTG 332 (351)
Q Consensus 272 ~~~~~-~~l~-~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~-------~v~~~~g~~~~~D~vi~a~G 332 (351)
++++. .+++ .+++.+.+.+.+.++++||+++++. |++++.. .+.++||+++++|.||+|+|
T Consensus 63 vie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 63 LLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp EECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred eeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 99997 4555 5788999999999999999999995 9988642 47889999999999999998
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.69 E-value=1.4e-20 Score=161.25 Aligned_cols=168 Identities=14% Similarity=0.101 Sum_probs=97.1
Q ss_pred CCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 58 ~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
+....++|+|||||||||+||..|++.|++|+|+|+++.+...........+...+.............+... ...
T Consensus 45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--- 120 (233)
T d1djqa3 45 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKK-NKE--- 120 (233)
T ss_dssp CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTT-CTT---
T ss_pred cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhc-cee---
Confidence 3456789999999999999999999999999999998876543322222112222211111111111111111 100
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccc-cccccCCHHHHHHHHHHHHHhhhc
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLML 216 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 216 (351)
..++...+.+.. .+.. .+.||+||+|||+.+..|.+++.+. .......... .
T Consensus 121 ---~~~~~~~~~~~~---~~~~--------~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 173 (233)
T d1djqa3 121 ---SQLALGQKPMTA---DDVL--------QYGADKVIIATGASECTLWNELKARESEWAENDIKG-------------I 173 (233)
T ss_dssp ---CEEECSCCCCCH---HHHH--------TSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCE-------------E
T ss_pred ---eeeecccccccc---hhhh--------hhccceeeeccCCCcccccccccccccccchhhhhh-------------h
Confidence 011111111111 1122 6789999999999877665444321 1110000000 0
Q ss_pred cCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 217 ~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
. ......++++|+|||++|+|+|.+|++.+ .+|++++|.+
T Consensus 174 ~-------~~~~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~r~~ 213 (233)
T d1djqa3 174 Y-------LIGDAEAPRLIADATFTGHRVAREIEEAN--------------PQIAIPYKRE 213 (233)
T ss_dssp E-------ECGGGTSCCCHHHHHHHHHHHHHTTTSSC--------------TTSCCCCCCC
T ss_pred h-------hccccCCceeEecCchHHHHHHHHHHhcC--------------CceEEEEecc
Confidence 0 01134468999999999999999999876 8899999974
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=2.2e-18 Score=139.90 Aligned_cols=133 Identities=15% Similarity=0.128 Sum_probs=87.0
Q ss_pred CCCCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 58 ~~~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
+...+++|+|||||||||+||..|+++|++|+|||+.+.......+... .+....+...+.++.. .....++.++.
T Consensus 39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~---~p~~~~~~~~~~~~~~-~~~~~gV~i~l 114 (179)
T d1ps9a3 39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQ---IPGKEEFYETLRYYRR-MIEVTGVTLKL 114 (179)
T ss_dssp SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTT---STTCTTHHHHHHHHHH-HHHHHTCEEEE
T ss_pred CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEe---CcccchHHHHHHHHHH-hhhcCCeEEEe
Confidence 3355689999999999999999999999999999999887543322211 2222222222222222 23334666654
Q ss_pred EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccccccCCHHHHHHHHHHHHHhhhcc
Q 018704 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (351)
Q Consensus 138 ~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (351)
.+.. .... ...||+||+|||+.|+.+.+|+.
T Consensus 115 ~~~V--------------t~~~--------~~~~d~vilAtG~~~~~~~~pg~--------------------------- 145 (179)
T d1ps9a3 115 NHTV--------------TADQ--------LQAFDETILASGIPNRALAQPLI--------------------------- 145 (179)
T ss_dssp SCCC--------------CSSS--------SCCSSEEEECCCEECCTTHHHHH---------------------------
T ss_pred CCEE--------------cccc--------cccceeEEEeecCCCcccccchh---------------------------
Confidence 3211 1111 56799999999998877765553
Q ss_pred CCCCCCHhhhcccCeEEEECCChHHHHH-HHHHHHHH
Q 018704 218 DVPGISEEEKSRLLHCVVVGGGPTGVEF-SGELSDFI 253 (351)
Q Consensus 218 ~~p~~~~~~~~~~~~v~VvGgG~~a~e~-a~~l~~~~ 253 (351)
..+++++|||+|++++++ +......|
T Consensus 146 ----------~~g~~v~vigggd~a~~~~~~~Av~~G 172 (179)
T d1ps9a3 146 ----------DSGKTVHLIGGCDVAMELDARRAIAQG 172 (179)
T ss_dssp ----------TTTCCEEECGGGTCCSSCCHHHHHHHH
T ss_pred ----------ccCCEEEEECCcHhhhhccchhhhhcc
Confidence 123489999999999987 44444444
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.69 E-value=2.1e-16 Score=119.60 Aligned_cols=90 Identities=27% Similarity=0.441 Sum_probs=79.6
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~ 308 (351)
++++|||||++|+|+|..+..++ ..+.+|+++++. .+++.+|+++.+.+.+.++++||+++++. +++
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~-----------~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ 89 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYK-----------PKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAK 89 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHC-----------CTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEE
T ss_pred CeEEEECCcHHHHHHHHHhhhcc-----------cCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEE
Confidence 49999999999999999988876 234689999997 58899999999999999999999999995 999
Q ss_pred EeC--C---eEEecCCcEEeccEEEEec
Q 018704 309 VDS--Q---KLILNDGTEVPYGLLVWST 331 (351)
Q Consensus 309 v~~--~---~v~~~~g~~~~~D~vi~a~ 331 (351)
++. + .+.+++|++++||.||+|+
T Consensus 90 ie~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 90 VELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp EEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred EEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 863 2 4888999999999999985
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.68 E-value=1.8e-16 Score=120.07 Aligned_cols=92 Identities=26% Similarity=0.435 Sum_probs=81.4
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~ 308 (351)
++++|||||++|+|+|..+.++. ..+.+|+++++. .+++.+++++.+.+++.++++||+++++. |++
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~-----------~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~ 87 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYK-----------ARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAK 87 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHS-----------CTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEE
T ss_pred CeEEEECCChHHHHHHHHhHhhc-----------ccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEE
Confidence 49999999999999999887763 234899999997 58899999999999999999999999995 999
Q ss_pred EeCC-----eEEecCCcEEeccEEEEecCC
Q 018704 309 VDSQ-----KLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 309 v~~~-----~v~~~~g~~~~~D~vi~a~G~ 333 (351)
++.+ .+.+++|++++||.||+|+|+
T Consensus 88 i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 88 VTKNADGTRHVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp EEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred EEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence 9642 478899999999999999994
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=6.4e-16 Score=120.34 Aligned_cols=115 Identities=17% Similarity=0.298 Sum_probs=96.3
Q ss_pred ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 018704 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (351)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~ 271 (351)
+.+..+++++++..+.+.+ +..++++|||||.+|+|+|..|.+... ..+.+|+
T Consensus 16 ~~~~~~r~~~d~~~l~~~~-----------------~~~k~i~IvGgG~~G~E~A~~l~~~~~----------~~g~~Vt 68 (137)
T d1m6ia2 16 SRTTLFRKIGDFRSLEKIS-----------------REVKSITIIGGGFLGSELACALGRKAR----------ALGTEVI 68 (137)
T ss_dssp HTEEECCSHHHHHHHHHHH-----------------HHCSEEEEECCSHHHHHHHHHHHHHHH----------HHTCEEE
T ss_pred CcEEEEcCHHHHHHHHHHh-----------------hcCCEEEEECCCHHHHHHHHHHHHHHH----------hcCCEEE
Confidence 4567788999999888775 345699999999999999999976431 0137999
Q ss_pred EEeCC-CCCC-CCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCC
Q 018704 272 LIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 272 ~~~~~-~~l~-~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~ 333 (351)
+++++ .+++ .+|+++.+.+.+.++++||+++.+. |++++.+ .+.+++|++++||.||+|+|.
T Consensus 69 ~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 69 QLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp EECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred EecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence 99997 4555 5899999999999999999999995 9998764 588899999999999999993
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.65 E-value=3.9e-16 Score=119.16 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=77.8
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~ 308 (351)
++++|||||.+|+|+|..+.++| .+|+++++. ++++.+|+++.+.+.+.++++||+++.+. +++
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G--------------~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~ 92 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLG--------------SRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVA 92 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEE
T ss_pred CeEEEECCCHHHHHHHHHhhcCC--------------CEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEE
Confidence 49999999999999999999998 999999997 58899999999999999999999999995 888
Q ss_pred EeC--Ce--EEec--CC--cEEeccEEEEecCC
Q 018704 309 VDS--QK--LILN--DG--TEVPYGLLVWSTGV 333 (351)
Q Consensus 309 v~~--~~--v~~~--~g--~~~~~D~vi~a~G~ 333 (351)
++. ++ +.++ +| +++++|.|++|+|+
T Consensus 93 v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 93 VEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp EEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred EEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence 864 33 3443 33 36999999999994
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=4.8e-16 Score=118.32 Aligned_cols=95 Identities=20% Similarity=0.411 Sum_probs=80.3
Q ss_pred hhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHH
Q 018704 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (351)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~ 293 (351)
+.+...|. +++|||||++|+|+|..+.++| .+|++++++++++.+|+++.+.+.+.
T Consensus 14 ~~l~~~P~----------~vvIIGgG~iG~E~A~~l~~lG--------------~~Vtii~~~~~l~~~D~~~~~~l~~~ 69 (122)
T d1h6va2 14 FSLPYCPG----------KTLVVGASYVALECAGFLAGIG--------------LDVTVMVRSILLRGFDQDMANKIGEH 69 (122)
T ss_dssp TTCSSCCC----------SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSTTSCHHHHHHHHHH
T ss_pred hCcccCCC----------eEEEECCCccHHHHHHHHhhcC--------------CeEEEEEechhhccCCHHHHHHHHHH
Confidence 45666674 9999999999999999999998 99999999889999999999999999
Q ss_pred hhhcCcEEEcCe-EEEEeC------C--eEEecCC-----cEEeccEEEEecC
Q 018704 294 LSKSGVRLVRGI-VKDVDS------Q--KLILNDG-----TEVPYGLLVWSTG 332 (351)
Q Consensus 294 l~~~gV~~~~~~-v~~v~~------~--~v~~~~g-----~~~~~D~vi~a~G 332 (351)
+++.||+++++. |++++. . .+.+.++ ..+++|.|++|+|
T Consensus 70 l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 70 MEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp HHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred HHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 999999999994 887753 1 3444332 2467999999998
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.63 E-value=1.7e-15 Score=114.22 Aligned_cols=88 Identities=30% Similarity=0.436 Sum_probs=78.9
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~ 308 (351)
++++|||||++|+|+|..|+++| .+||++++. ++++.+++++.+.+.+.++++||++++++ |++
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g--------------~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~ 87 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLG--------------AQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEG 87 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEE
T ss_pred CeEEEECCCHHHHHHHHHHhhcc--------------cceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEE
Confidence 49999999999999999999988 899999996 68899999999999999999999999995 999
Q ss_pred EeCCeEEecC----CcEEeccEEEEecC
Q 018704 309 VDSQKLILND----GTEVPYGLLVWSTG 332 (351)
Q Consensus 309 v~~~~v~~~~----g~~~~~D~vi~a~G 332 (351)
++++.....+ +++++||.|++|+|
T Consensus 88 i~~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 88 YENGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp EETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred EcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 9887655532 35799999999998
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.62 E-value=2.3e-15 Score=114.05 Aligned_cols=88 Identities=23% Similarity=0.396 Sum_probs=77.9
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~ 308 (351)
++++|||||.+|+|+|..++++| .+|+++++. ++++.+++++.+.+++.+++.||+++++. |++
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G--------------~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~ 88 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLG--------------AEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTG 88 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEE
T ss_pred CeEEEECCChHHHHHHHHHHHcC--------------CceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEEE
Confidence 39999999999999999999998 999999997 58899999999999999999999999995 988
Q ss_pred EeC--C--eEEecCC---cEEeccEEEEecC
Q 018704 309 VDS--Q--KLILNDG---TEVPYGLLVWSTG 332 (351)
Q Consensus 309 v~~--~--~v~~~~g---~~~~~D~vi~a~G 332 (351)
++. + .+.+.++ ++++||.|++|+|
T Consensus 89 i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 89 TEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp EEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred EEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 864 3 3555443 5689999999998
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.1e-15 Score=114.42 Aligned_cols=88 Identities=30% Similarity=0.451 Sum_probs=75.8
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~ 308 (351)
|+++|||||++|+|+|..|.++| .+|++++|+ ++++.+|+++.+.+.+.++++||+++++. +++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G--------------~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 88 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALG--------------SKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKE 88 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhcCC--------------cEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 49999999999999999999988 999999998 58899999999999999999999999995 998
Q ss_pred EeC--CeEEe-----cCCc------EEeccEEEEecC
Q 018704 309 VDS--QKLIL-----NDGT------EVPYGLLVWSTG 332 (351)
Q Consensus 309 v~~--~~v~~-----~~g~------~~~~D~vi~a~G 332 (351)
++. +++.. .+|+ .+++|.|++|+|
T Consensus 89 i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 89 VKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp EEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred EEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 854 44322 3342 467999999998
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.59 E-value=4.6e-15 Score=112.18 Aligned_cols=86 Identities=27% Similarity=0.491 Sum_probs=74.5
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~ 308 (351)
++++|||||++|+|+|..+.++| .+||++++. ++++.+++++.+.+.+.++++||+++++. |++
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G--------------~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~ 88 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFG--------------TKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKG 88 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEE
T ss_pred CeEEEECCCccceeeeeeecccc--------------cEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEEE
Confidence 49999999999999999999988 999999997 58899999999999999999999999995 998
Q ss_pred EeC--Ce--EEe-cCC--cEEeccEEEEe
Q 018704 309 VDS--QK--LIL-NDG--TEVPYGLLVWS 330 (351)
Q Consensus 309 v~~--~~--v~~-~~g--~~~~~D~vi~a 330 (351)
++. ++ +.+ .+| +++++|.|+++
T Consensus 89 i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 89 AEEREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp EEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred EEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 864 33 333 344 46999999974
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=9.2e-15 Score=111.14 Aligned_cols=86 Identities=21% Similarity=0.341 Sum_probs=74.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~ 308 (351)
++++|||||++|+|+|..|.++| .+||++++. +++|.+++++.+.+++.++++||+++++. |++
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG--------------~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~ 89 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLG--------------SKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVIS 89 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred CeEEEECCCchHHHHHHHHHhhC--------------cceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEE
Confidence 49999999999999999999998 999999996 68899999999999999999999999995 888
Q ss_pred EeC--C----eEEecCC-----cEEeccEEEEe
Q 018704 309 VDS--Q----KLILNDG-----TEVPYGLLVWS 330 (351)
Q Consensus 309 v~~--~----~v~~~~g-----~~~~~D~vi~a 330 (351)
++. + .+++.++ ++++||.|++|
T Consensus 90 v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 90 AKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred EEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 864 2 2344433 36899999986
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.56 E-value=8.9e-15 Score=111.32 Aligned_cols=89 Identities=18% Similarity=0.312 Sum_probs=77.4
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EE
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VK 307 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~ 307 (351)
+++++|||||++|+|+|..|++++ .+|+++++. ++++.+++++.+.+.+.++++||+++++. ++
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g--------------~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~ 87 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATG--------------RRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVT 87 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcc--------------hhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEE
Confidence 469999999999999999999887 999999997 57899999999999999999999999995 98
Q ss_pred EEeCC------eEE---ecCCcEEeccEEEEecC
Q 018704 308 DVDSQ------KLI---LNDGTEVPYGLLVWSTG 332 (351)
Q Consensus 308 ~v~~~------~v~---~~~g~~~~~D~vi~a~G 332 (351)
+++.+ .+. ..++++++||+||+|+|
T Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 88 RIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp EEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred EEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 88653 121 23456799999999998
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.55 E-value=1.9e-14 Score=109.53 Aligned_cols=87 Identities=26% Similarity=0.390 Sum_probs=75.1
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEE
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~ 308 (351)
++++|||||.+|+|+|..+.++| .+||+++|+ ++++.+++++.+.+.+.+++.||++++|. +++
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G--------------~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~ 91 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIG--------------SEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVG 91 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEE
T ss_pred CeEEEEccchHHHHHHHHHHhcC--------------CeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEE
Confidence 39999999999999999999998 999999997 58899999999999999999999999995 999
Q ss_pred EeCC--e--EEe--c-CC--cEEeccEEEEec
Q 018704 309 VDSQ--K--LIL--N-DG--TEVPYGLLVWST 331 (351)
Q Consensus 309 v~~~--~--v~~--~-~g--~~~~~D~vi~a~ 331 (351)
++.+ + +.+ . +| ++++||.|++|.
T Consensus 92 i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 92 VDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp EECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred EEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 9753 2 333 2 33 358999999874
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1e-15 Score=128.79 Aligned_cols=34 Identities=9% Similarity=0.145 Sum_probs=32.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+|||+||||||||++||.++++.|.+|+|||++.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~ 35 (217)
T d1gesa1 2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE 35 (217)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence 5899999999999999999999999999999864
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.51 E-value=7.7e-15 Score=116.88 Aligned_cols=137 Identities=10% Similarity=-0.024 Sum_probs=97.1
Q ss_pred ecCCCcCCC-CCCCccccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEE--CCChHHHHHHHHHHHHH
Q 018704 177 ALGAEASTF-GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV--GGGPTGVEFSGELSDFI 253 (351)
Q Consensus 177 AtG~~p~~p-~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~Vv--GgG~~a~e~a~~l~~~~ 253 (351)
|||+.|..| +|||.+....++.+.++... ....|+ ++++|+ |||.+|+|+|..|+++|
T Consensus 4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~----------~~~~~~---------~~vvi~d~ggg~ig~e~A~~la~~G 64 (156)
T d1djqa2 4 TDGTNCLTHDPIPGADASLPDQLTPEQVMD----------GKKKIG---------KRVVILNADTYFMAPSLAEKLATAG 64 (156)
T ss_dssp SSCCCTTTSSCCTTCCTTSTTEECHHHHHH----------TCSCCC---------SEEEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCccCCCCEEECHHHHhc----------CccccC---------CceEEEecCCChHHHHHHHHHHHcC
Confidence 899999887 79999743222224444422 222232 355555 99999999999999998
Q ss_pred HHHHHhhhcCCCCccEEEEEeCCC-CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEec
Q 018704 254 MRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWST 331 (351)
Q Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~ 331 (351)
.+||++++.+ +++.+++.....+.+.|++.||+++++. +.+++.+++.+.+....+.+.++.++
T Consensus 65 --------------~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~l~~~~~~~~~~v~~~~ 130 (156)
T d1djqa2 65 --------------HEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGP 130 (156)
T ss_dssp --------------CEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEEEEEETTEEEEEETTCSCSCCCCCCT
T ss_pred --------------CeEEEEecCCccccccchhHHHHHHHHHhhccceEEeccEEEEecCcceEEEeeeccccceeeeee
Confidence 9999999974 5666777788889999999999999995 99999988877654444455555555
Q ss_pred CCCCc-cccccCCCCC
Q 018704 332 GVGPS-TLVKSLDLPK 346 (351)
Q Consensus 332 G~~p~-~~~~~~gl~~ 346 (351)
|..|+ ......+++.
T Consensus 131 g~~~~~~~~~~~~le~ 146 (156)
T d1djqa2 131 GVSPRDANTSHRWIEF 146 (156)
T ss_dssp TSCSSCCCCCCEEEEC
T ss_pred EEEecccCCccCcEec
Confidence 55555 3444444433
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.36 E-value=8.4e-15 Score=124.73 Aligned_cols=158 Identities=14% Similarity=0.044 Sum_probs=88.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccC-------ceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL-------YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSY 134 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g-------~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (351)
+++|+|||||||||+||++|+++| ++|+|||+.+..... ...+.+........+.+.........++.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~-----~~~gi~p~~~~~~~~~~~~~~~~~~~g~~ 76 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL-----VRSGVAPDHPKIKSISKQFEKTAEDPRFR 76 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTH-----HHHTSCTTCTGGGGGHHHHHHHHTSTTEE
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCe-----eeeccCcccccchhhhhhhhhhhccCCce
Confidence 369999999999999999999877 589999998875421 11233333333334444444445566777
Q ss_pred EEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCccccc-cccCCHHHHHHHHHHHHHh
Q 018704 135 FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA-TFLREVHHAQEIRRKLLLN 213 (351)
Q Consensus 135 ~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~-~~~~~~~~~~~~~~~~~~~ 213 (351)
++...... ..... +. ....||++++|||+.+..+.++|..... ..........
T Consensus 77 ~~~~~~v~-----~~~~~----~~--------~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~~~~~~~~~--------- 130 (239)
T d1lqta2 77 FFGNVVVG-----EHVQP----GE--------LSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNVGGR--------- 130 (239)
T ss_dssp EEESCCBT-----TTBCH----HH--------HHHHSSEEEECCCCCEECCCCTTSCCBTTTTBCCEETTE---------
T ss_pred EEEEEEec-----cccch----hh--------hhccccceeeecCCCccccccccccccccccchhhhhhh---------
Confidence 66542211 11100 01 1457999999999987777666654211 1000000000
Q ss_pred hhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHH
Q 018704 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD 251 (351)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~ 251 (351)
..... .......-.++++++|+|+|+.+++++..+..
T Consensus 131 ~~~~~-~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v~ 167 (239)
T d1lqta2 131 INGSP-NEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK 167 (239)
T ss_dssp ETTCS-SEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred hcccc-ccccceeecCCCEEEEeCCCchHHHHHHHHHh
Confidence 00000 00000000223578888899999999887654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.36 E-value=9.6e-13 Score=106.74 Aligned_cols=113 Identities=24% Similarity=0.274 Sum_probs=81.8
Q ss_pred CcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEe
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
++|||||||++|+.+|.+|++.+ .+|+|||+++.+...+................. .........+.+....+
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~ 77 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKH-----GYDGLRAHGIQVVHDSA 77 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEE-----CSHHHHTTTEEEECCCE
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhh-----hhhhccccceeEeeeee
Confidence 69999999999999999999976 589999999887665544443332222221111 11122345677777888
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCCcc
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK 191 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~ 191 (351)
..++...+.+.+ .+++ .+.||.||+|||..|+.+.+++..
T Consensus 78 ~~~~~~~~~~~~---~~~~--------~i~~D~li~atG~~~~~~~i~~~~ 117 (186)
T d1fcda1 78 TGIDPDKKLVKT---AGGA--------EFGYDRCVVAPGIELIYDKIEQRA 117 (186)
T ss_dssp EECCTTTTEEEE---TTSC--------EEECSEEEECCCEEECCTTSTEEE
T ss_pred Eeeeeccceeec---ccce--------eeccceEEEEeccccchhhhhhhh
Confidence 888888887765 4565 899999999999999888777653
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.33 E-value=1.2e-12 Score=112.02 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=34.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+++||+|||||++||+||+.|++.|++|+|||+++..
T Consensus 1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4699999999999999999999999999999987654
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.31 E-value=9.4e-13 Score=114.69 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=60.8
Q ss_pred HHhhhcCCC-CccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEe
Q 018704 257 VRQRYSHVK-DYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWS 330 (351)
Q Consensus 257 ~~~~~~~~~-~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a 330 (351)
+.+.+|.+. +.....+..+..- ...+..+...+.+.+++.|++++.++ |.+++. + +|.+++| ++.||.||+|
T Consensus 123 ~~~~~p~~~~~~~~~~~~~~~~g-~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViA 200 (281)
T d2gf3a1 123 INKRWPGITVPENYNAIFEPNSG-VLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVS 200 (281)
T ss_dssp HHHHSTTCCCCTTEEEEEETTCE-EEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEEC
T ss_pred hhhhhhcccccccceeeeccccc-cccccccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEEC
Confidence 344555544 3334445544321 11235677888889999999999995 998864 3 4566666 6999999999
Q ss_pred cCCCCccccccCCCCC
Q 018704 331 TGVGPSTLVKSLDLPK 346 (351)
Q Consensus 331 ~G~~p~~~~~~~gl~~ 346 (351)
+|.+.+.++..+|+..
T Consensus 201 aG~~s~~l~~~lg~~~ 216 (281)
T d2gf3a1 201 MGAWNSKLLSKLNLDI 216 (281)
T ss_dssp CGGGHHHHGGGGTEEC
T ss_pred CCCcchhhHHhcCCcc
Confidence 9988888888877654
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=7.4e-13 Score=105.79 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=87.2
Q ss_pred cCCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHHHHHHHHHh-
Q 018704 182 ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ- 259 (351)
Q Consensus 182 p~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~- 259 (351)
|+.|+|||.+ +++++. .++ +.+. ...+|+|+|||||++|+|+|..+.+.|......
T Consensus 2 Pr~p~IpG~d~~~V~~a---~d~--L~~~-----------------~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~ 59 (162)
T d1ps9a2 2 PRTPPIDGIDHPKVLSY---LDV--LRDK-----------------APVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNI 59 (162)
T ss_dssp ECCCCCBTTTSTTEEEH---HHH--HTSC-----------------CCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCH
T ss_pred CCCCCCCCCCCCCeEEH---HHH--hhCc-----------------cccCCceEEEcCchhHHHHHHHHHHcCCccceeH
Confidence 7899999987 555542 121 1111 134579999999999999999999876422111
Q ss_pred -----hhc-----------------CCCCccEEEEEeCC-C-CCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEEeCCeE
Q 018704 260 -----RYS-----------------HVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKL 314 (351)
Q Consensus 260 -----~~~-----------------~~~~~~~v~~~~~~-~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~~v 314 (351)
.+. ......+++.+... . ....++..........++..||+++++. +.+++++++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~gv 139 (162)
T d1ps9a2 60 AGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGL 139 (162)
T ss_dssp HHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEE
T ss_pred hhhhhhccCCcchhhhcccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcCCCC
Confidence 000 01122345555443 2 3344555666677788999999999994 999999887
Q ss_pred Eec-CCc--EEeccEEEEecCC
Q 018704 315 ILN-DGT--EVPYGLLVWSTGV 333 (351)
Q Consensus 315 ~~~-~g~--~~~~D~vi~a~G~ 333 (351)
.+. +|+ .++||.||+|+|+
T Consensus 140 ~~~~~g~e~~i~aD~Vv~A~Gq 161 (162)
T d1ps9a2 140 HVVINGETQVLAVDNVVICAGQ 161 (162)
T ss_dssp EEEETTEEEEECCSEEEECCCE
T ss_pred EEecCCeEEEEECCEEEECCCC
Confidence 663 454 4899999999996
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.30 E-value=9.6e-13 Score=115.63 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=78.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhh---hhhhcc-------------------ccccccccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL---ASTCVG-------------------TLEFRSVAE 118 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~ 118 (351)
...||+|||||++||++|++|++.|++|+|||+++........ ++.... .........
T Consensus 6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~ 85 (298)
T d1w4xa1 6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQP 85 (298)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccc
Confidence 4579999999999999999999999999999998765322100 000000 000001112
Q ss_pred chhccchhhhcCCCe---EEEEEEeeeEe--CCCCEEEEEeecCccccCCCceeEeeccEEEEecCC--CcCCCCCCCcc
Q 018704 119 PIARIQPAISREPGS---YFFLSHCAGID--TDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHGVK 191 (351)
Q Consensus 119 ~~~~~~~~~~~~~~~---~~~~~~v~~i~--~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~p~~p~i~g~~ 191 (351)
.+.++...+....++ ..++.+|+++. .+.+.|.++. .++. ++.+|.||+|||. .|..|.+++++
T Consensus 86 e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~-~~~~--------~~~~~~~i~atG~ls~~~~p~~~~~~ 156 (298)
T d1w4xa1 86 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT-NHGD--------RIRARYLIMASGQLSDALTGALFKID 156 (298)
T ss_dssp HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEE-TTCC--------EEEEEEEEECCCSCCCCTTHHHHTSE
T ss_pred hHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeecc-cccc--------ccccceEEEeecccccccCCcccccc
Confidence 222333333333332 34456788885 5567788865 3454 8999999999994 58888777765
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.30 E-value=2.3e-12 Score=111.81 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCCCCccccccCCCCC
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~~ 346 (351)
..+...+.+.+++.|++++.++ |++++.+ +|.+++| ++.||.||+|+|.+...+++.+|+..
T Consensus 151 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~~ 217 (276)
T d1ryia1 151 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNN 217 (276)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCC
T ss_pred ccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHHHHHhhcCCCc
Confidence 5677788888999999999995 8888753 5666666 69999999999999888888888764
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.29 E-value=1.9e-13 Score=118.00 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=31.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
|||+||||||||++||.++++.|.+|+|||++.
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~ 34 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR 34 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 799999999999999999999999999999864
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=3.3e-12 Score=106.67 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=79.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCccccc-hhhhhhhcccccc--------------------cccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLLASTCVGTLEF--------------------RSVA 117 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~~~~~-~~~~~~~~~~~~~--------------------~~~~ 117 (351)
.++++||||||++|+.+|..|++.+. +|++|+++++++|. +.++......... ....
T Consensus 3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213)
T d1m6ia1 3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS 82 (213)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChh
Confidence 34789999999999999999998765 59999998888765 3333222111100 0000
Q ss_pred cchhccchhhhcCCCeEEEEE-EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCCCC
Q 018704 118 EPIARIQPAISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (351)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i~g 189 (351)
..............++.++.. +|+.||.+.+.+.+ ++|+ ++.||.||+|||+.|..+.+++
T Consensus 83 ~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l---~dG~--------~i~~d~lViAtG~~~~~~~l~~ 144 (213)
T d1m6ia1 83 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKL---NDGS--------QITYEKCLIATGGTEPNVELAK 144 (213)
T ss_dssp GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEE---TTSC--------EEEEEEEEECCCEEEECCTTHH
T ss_pred hhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeee---ccce--------eeccceEEEeeeeecchhhhhh
Confidence 011111112233456777664 79999999998866 5777 8999999999998877665554
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.27 E-value=1e-11 Score=99.41 Aligned_cols=101 Identities=29% Similarity=0.466 Sum_probs=77.0
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHH-------------HHHHhhhcC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHY-------------ATTQLSKSG 298 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~-------------~~~~l~~~g 298 (351)
||+|||||++|+|+|..|.+ + .+|+++++.+.....++.+.+. ..+.+.+.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~--------------~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-T--------------YEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRG 66 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-T--------------SEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHT
T ss_pred eEEEECCcHHHHHHHHHHHc-C--------------CCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhcc
Confidence 89999999999999998864 2 7899999865322222222221 234566789
Q ss_pred cEEEcCe-EEEEeCC-eEEecCCcEEeccEEEEecCCCCccccccCCCCCC
Q 018704 299 VRLVRGI-VKDVDSQ-KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKS 347 (351)
Q Consensus 299 V~~~~~~-v~~v~~~-~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~~~ 347 (351)
++++.+. ++.++.+ .+.+.++.++++|.+|+|+|..|+++++..|++.+
T Consensus 67 v~~~~~~~v~~i~~~~~~~~~~~~~i~~D~li~a~G~~~~~~~~~~gl~~~ 117 (167)
T d1xhca1 67 IEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTG 117 (167)
T ss_dssp EEEECSCCEEEEETTTTEEEESSCEEECSEEEECCCEECCHHHHHTTCCBS
T ss_pred ceeeeeccccccccccccccccccccccceeEEEEEecCCchhhhcCceeC
Confidence 9999995 9998754 67778888999999999999988888888888764
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=6.2e-12 Score=95.61 Aligned_cols=90 Identities=22% Similarity=0.262 Sum_probs=73.0
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-E
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-V 306 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v 306 (351)
.+.|+|+|||||++|+|.|..|++++ .+|++++|++-++. ++.+.+.+.+..+..+|.++++. +
T Consensus 25 ~~~k~V~VvGgGdsA~e~A~~L~~~a--------------~~V~li~r~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~v 89 (126)
T d1trba2 25 YRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFRA-EKILIKRLMDKVENGNIILHTNRTL 89 (126)
T ss_dssp GTTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCC-CHHHHHHHHHHHHTSSEEEECSCEE
T ss_pred hCCCEEEEECCCHHHHHHHHHHhhcC--------------CcEEEEeecccccc-hhHHHHHHHHhhcccceeEecceEE
Confidence 34579999999999999999999987 89999999865543 56667777777888999999995 8
Q ss_pred EEEeCC-----eEEecCC------cEEeccEEEEecC
Q 018704 307 KDVDSQ-----KLILNDG------TEVPYGLLVWSTG 332 (351)
Q Consensus 307 ~~v~~~-----~v~~~~g------~~~~~D~vi~a~G 332 (351)
.++.++ +|++.|. +++++|.||+++|
T Consensus 90 ~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 90 EEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp EEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred EEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 888763 4566442 3589999999987
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=99.25 E-value=7.9e-12 Score=104.09 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=73.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc-ccc---hhhhhhhcccc----cccc--cccchhccchhhhcCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM-VFT---PLLASTCVGTL----EFRS--VAEPIARIQPAISREP 131 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~-~~~---~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~ 131 (351)
.|||+||||||||+.||.+++|.|.+++||+.+... ... |.......+.. .... ......+....+....
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~ 81 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLR 81 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhc
Confidence 389999999999999999999999999999876321 111 11111111110 0000 0001122233455677
Q ss_pred CeEEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC
Q 018704 132 GSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181 (351)
Q Consensus 132 ~~~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 181 (351)
+..++..+|+.+..+++.+.--...+|. ++.++.||||||..
T Consensus 82 nL~i~q~~V~dli~e~~~v~gV~t~~G~--------~~~AkaVILtTGTF 123 (230)
T d2cula1 82 PLHLFQATATGLLLEGNRVVGVRTWEGP--------PARGEKVVLAVGSF 123 (230)
T ss_dssp TEEEEECCEEEEEEETTEEEEEEETTSC--------CEECSEEEECCTTC
T ss_pred CHHHHhccceeeEecccceeeEEecccc--------EEEEeEEEEccCcc
Confidence 8999999999998877766533336676 89999999999985
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.23 E-value=3.2e-11 Score=99.31 Aligned_cols=114 Identities=17% Similarity=0.204 Sum_probs=77.6
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCccccchh-hhhhhcccccccccccchhccchhhhcCCCeEE-EEE
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYF-FLS 138 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 138 (351)
++|+|||||++|+.+|..|++. +.+|+++|+++...|.+. ++....+..... ..+...........++.+ ...
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~l~~~gi~v~~~~ 77 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDV---NSVRYMTGEKMESRGVNVFSNT 77 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCG---GGSBSCCHHHHHHTTCEEEETE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccch---HHHHHhhHHHHHHCCcEEEEee
Confidence 4799999999999999999985 568999999888766532 222222222111 111111112223346665 456
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
+|+.++.+.+.+.+....+++ .+.+.||.+|+|+|..|..+
T Consensus 78 ~V~~i~~~~~~v~~~~~~~g~------~~~~~~D~li~a~G~~~~~~ 118 (198)
T d1nhpa1 78 EITAIQPKEHQVTVKDLVSGE------ERVENYDKLIISPGAVPFEL 118 (198)
T ss_dssp EEEEEETTTTEEEEEETTTCC------EEEEECSEEEECCCEEECCC
T ss_pred ceeeEeeccccceeeeccccc------ccccccceeeEeecceeecc
Confidence 899999999999887655554 45789999999999876543
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=2.3e-11 Score=92.38 Aligned_cols=88 Identities=24% Similarity=0.333 Sum_probs=66.0
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-E
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-V 306 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v 306 (351)
.++|+|+|||||++|+|.|..|++++ .+|++++|++.+... +.+ .++..+..+|+++++. +
T Consensus 28 ~~gk~V~VvGgG~sA~~~A~~L~~~a--------------~~V~li~r~~~~~~~-~~~---~~~~~~~~~I~v~~~~~v 89 (126)
T d1fl2a2 28 FKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEMKAD-QVL---QDKLRSLKNVDIILNAQT 89 (126)
T ss_dssp GBTCEEEEECCSHHHHHHHHHHHTTB--------------SEEEEECSSSSCCSC-HHH---HHHHHTCTTEEEESSEEE
T ss_pred cCCceEEEEeCCHHHHHHHHhhhccC--------------CceEEEecccccccc-ccc---ccccccccceeEEcCcce
Confidence 45579999999999999999999887 899999998654422 222 2233344679999995 9
Q ss_pred EEEeCC-----eEEecC---C--cEEeccEEEEecCC
Q 018704 307 KDVDSQ-----KLILND---G--TEVPYGLLVWSTGV 333 (351)
Q Consensus 307 ~~v~~~-----~v~~~~---g--~~~~~D~vi~a~G~ 333 (351)
.++.++ ++++.+ | +++++|.||+++|.
T Consensus 90 ~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 90 TEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp EEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred EEEEccccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence 888763 355543 4 35899999999983
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.21 E-value=4.8e-12 Score=108.55 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=34.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+.+||+|||||+|||+||+.|++.|.+|+|||+.+..
T Consensus 3 ~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (253)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4589999999999999999999999999999988654
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.21 E-value=2.7e-11 Score=108.12 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~~ 97 (351)
.++|+|||||+|||+||+.|++.| .+|+|+|+++..
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~i 41 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP 41 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 468999999999999999998765 599999999765
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=9.4e-12 Score=101.88 Aligned_cols=112 Identities=17% Similarity=0.145 Sum_probs=72.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhh--hcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST--CVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
+.+||+||||||+||+||.+|+|.|.+|+|||+............. ..+.+... ....+.+.........++.+...
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 82 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDL-TGPLLMERMHEHATKFETEIIFD 82 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSC-BHHHHHHHHHHHHHHTTCEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhcccccc-chHHHHHHHHHHHHhcCcEEecc
Confidence 3479999999999999999999999999999976543211110000 00111111 11112222222233446677778
Q ss_pred EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcC
Q 018704 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (351)
Q Consensus 139 ~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~ 183 (351)
+|+.++.....+.+.. ... .+.++.+++|+|..++
T Consensus 83 ~V~~~~~~~~~~~v~~--~~~--------~~~~~~viva~G~~~~ 117 (190)
T d1trba1 83 HINKVDLQNRPFRLNG--DNG--------EYTCDALIIATGASAR 117 (190)
T ss_dssp CEEEEECSSSSEEEEE--SSC--------EEEEEEEEECCCEEEC
T ss_pred eeEEEecCCCcEEEEE--eee--------eEeeeeeeeecceeee
Confidence 8999998888777653 233 7899999999998765
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.18 E-value=4.8e-12 Score=106.90 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=62.9
Q ss_pred CcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEEEe
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (351)
++|+|||||||||+||.+|++. |++|+|||+.+..... ...+.+........+...........++.+.....
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGL-----VRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVE 76 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTH-----HHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCC
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCce-----ehhhccccccccccchhhhhhhhhcCCeeEEeeEE
Confidence 5899999999999999999874 7899999998774311 11122222222233333333344455666654332
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCc-CCCCCCCcc
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA-STFGIHGVK 191 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p-~~p~i~g~~ 191 (351)
.+.| +... . ....||.+++|||+.+ ..+.+++..
T Consensus 77 v~~~-----~~~~----~--------l~~~~d~v~~a~Ga~~~~~~~~~~~~ 111 (230)
T d1cjca2 77 VGRD-----VTVQ----E--------LQDAYHAVVLSYGAEDKSRPIDPSVP 111 (230)
T ss_dssp BTTT-----BCHH----H--------HHHHSSEEEECCCCCEECCCCCTTSC
T ss_pred eCcc-----ccHH----H--------HHhhhceEEEEeeccccccccccccc
Confidence 2111 1000 0 0336999999999974 344555543
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.17 E-value=3.3e-12 Score=107.10 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=34.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+|||+|||||||||+||.++++.|.+|+|||+++.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~ 38 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL 38 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 4699999999999999999999999999999987664
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=3.4e-11 Score=90.18 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=66.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
+++|+|||||+.|+.+|..|++.|.+|+|+|+.+++. + . +...+.+......+..++.++.. .|
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l--~----------~---~d~~~~~~~~~~l~~~GV~~~~~~~v 85 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL--P----------S---FDPMISETLVEVMNAEGPQLHTNAIP 85 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--T----------T---SCHHHHHHHHHHHHHHSCEEECSCCE
T ss_pred CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhh--h----------h---cchhhHHHHHHHHHHCCCEEEeCCEE
Confidence 3689999999999999999999999999999988642 1 0 11222233233333447776654 67
Q ss_pred eeEeCCCC-EEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 141 ~~i~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
+.+..+.+ .+.++ .++|+ ++.+|.||+|||
T Consensus 86 ~~i~~~~~~~~~v~-~~~g~--------~~~~D~vi~a~G 116 (116)
T d1gesa2 86 KAVVKNTDGSLTLE-LEDGR--------SETVDCLIWAIG 116 (116)
T ss_dssp EEEEECTTSCEEEE-ETTSC--------EEEESEEEECSC
T ss_pred EEEEEcCCcEEEEE-ECCCC--------EEEcCEEEEecC
Confidence 77765543 34443 35676 899999999998
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=99.15 E-value=9.1e-11 Score=103.03 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEecCCcEEeccEEEEecCCCCccccccCCCCC
Q 018704 283 DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346 (351)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~gl~~ 346 (351)
+..+...+.+.+++.|++++.++ |+++.. + +|.+.+| +++||.||+|+|.+..++++.+|+.+
T Consensus 147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~~l 215 (305)
T d1pj5a2 147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAV 215 (305)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCC
T ss_pred hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHHHHHHHcCCcc
Confidence 35777888888999999999995 988864 3 3666655 79999999999998888888777665
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.14 E-value=1.3e-10 Score=87.23 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=69.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-E
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (351)
.+.+++|||||+.|+.+|..|++.|.+|+++++.+++.- .+...+...........++.++.. +
T Consensus 21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~---------------~~d~ei~~~l~~~l~~~Gv~i~~~~~ 85 (119)
T d3lada2 21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP---------------AVDEQVAKEAQKILTKQGLKILLGAR 85 (119)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST---------------TSCHHHHHHHHHHHHHTTEEEEETCE
T ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC---------------cccchhHHHHHHHHHhcCceeecCcE
Confidence 347899999999999999999999999999999876420 112222333333344457776664 7
Q ss_pred eeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 140 v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
++.++.+++.+.++....+. ..++.||.|++|+|
T Consensus 86 v~~i~~~~~~v~v~~~~~~~------~~~~~~D~vlvAvG 119 (119)
T d3lada2 86 VTGTEVKNKQVTVKFVDAEG------EKSQAFDKLIVAVG 119 (119)
T ss_dssp EEEEEECSSCEEEEEESSSE------EEEEEESEEEECSC
T ss_pred EEEEEEeCCEEEEEEEECCC------CEEEECCEEEEeeC
Confidence 89898887766654433222 23899999999998
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.10 E-value=5.8e-11 Score=88.77 Aligned_cols=94 Identities=17% Similarity=0.304 Sum_probs=62.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
+.+++|||||+.|+.+|..|++.|.+|+|+|+.++.. + . +...+.+.........++.++.. +|
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il-----~-------~---~d~~~~~~l~~~l~~~gV~i~~~~~V 85 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL-----P-------T---YDSELTAPVAESLKKLGIALHLGHSV 85 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-----T-------T---SCHHHHHHHHHHHHHHTCEEETTCEE
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc-----c-------c---ccchhHHHHHHHHHhhcceEEcCcEE
Confidence 3689999999999999999999999999999988742 0 0 11122222222233346776554 67
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
+.++.. ..+......++. ++.+|.|++|||
T Consensus 86 ~~i~~~-~~~~~~~~~~~~--------~i~~D~vi~A~G 115 (115)
T d1lvla2 86 EGYENG-CLLANDGKGGQL--------RLEADRVLVAVG 115 (115)
T ss_dssp EEEETT-EEEEECSSSCCC--------EECCSCEEECCC
T ss_pred EEEcCC-eEEEEEcCCCeE--------EEEcCEEEEecC
Confidence 777632 222222212223 799999999998
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.10 E-value=1.7e-10 Score=86.82 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=65.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
.++|+|||||+.|+.+|..|+++|.+|+++|+.+++... .+...+.+.........++.++. ..|
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~--------------~~~~~~~~~~~~~l~~~GV~i~~~~~v 95 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR--------------AAPATLADFVARYHAAQGVDLRFERSV 95 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--------------TSCHHHHHHHHHHHHTTTCEEEESCCE
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc--------------cCCHHHHHHHHHHHHHCCcEEEeCCEE
Confidence 378999999999999999999999999999998874211 11223333333345556887755 466
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
+.+.. ..+.+ ++|+ ++.+|.||+|+|
T Consensus 96 ~~~~~--~~v~l---~dg~--------~i~~D~vi~a~G 121 (121)
T d1d7ya2 96 TGSVD--GVVLL---DDGT--------RIAADMVVVGIG 121 (121)
T ss_dssp EEEET--TEEEE---TTSC--------EEECSEEEECSC
T ss_pred EEEeC--CEEEE---CCCC--------EEECCEEEEeeC
Confidence 66654 34433 5676 899999999998
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.09 E-value=1.5e-10 Score=88.70 Aligned_cols=96 Identities=18% Similarity=0.322 Sum_probs=66.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||++|+.+|..|++.|.+|+|+|+.++..-. .+...+.+.........++.++. ..|
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~--------------~~~~~~~~~~~~~~~~~GV~i~~~~~v 100 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER--------------VTAPPVSAFYEHLHREAGVDIRTGTQV 100 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT--------------TSCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc--------------ccchhhhhhhhhcccccccEEEeCCeE
Confidence 478999999999999999999999999999998874210 01122222222233444677665 467
Q ss_pred eeEeCC--CCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 141 AGIDTD--NHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 141 ~~i~~~--~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
+.++.. ...+....+++|. ++.+|.||+|+|
T Consensus 101 ~~i~~~~~~~~v~~v~~~~G~--------~i~~D~vi~a~G 133 (133)
T d1q1ra2 101 CGFEMSTDQQKVTAVLCEDGT--------RLPADLVIAGIG 133 (133)
T ss_dssp EEEEECTTTCCEEEEEETTSC--------EEECSEEEECCC
T ss_pred EEEEEeCCCceEEEEECCCCC--------EEECCEEEEeeC
Confidence 777643 3333333446777 899999999998
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.07 E-value=1.4e-11 Score=103.37 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=32.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
++|||+|||||||||+||.+|+|.|++|+|||+..
T Consensus 2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~ 36 (229)
T d3lada1 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36 (229)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 56999999999999999999999999999999764
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.06 E-value=3.1e-11 Score=101.07 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=33.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+.++|+|||||||+|++||.++++.|.+|+|||++.
T Consensus 3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~ 38 (220)
T d1lvla1 3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA 38 (220)
T ss_dssp CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 456899999999999999999999999999999864
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=9.8e-11 Score=97.52 Aligned_cols=105 Identities=19% Similarity=0.295 Sum_probs=76.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHH--------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDR-------------------------- 285 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~-------------------------- 285 (351)
+++|||||.+|+++|..|.+.+ ...+|+++.+...+|-..+.
T Consensus 6 ~~vIvG~G~aG~~~A~~Lr~~~------------~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~ 73 (213)
T d1m6ia1 6 PFLLIGGGTAAFAAARSIRARD------------PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKE 73 (213)
T ss_dssp EEEEESCSHHHHHHHHHHHHHS------------TTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCE
T ss_pred CEEEECCcHHHHHHHHHHHhcC------------CCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccch
Confidence 7899999999999999997654 23689999875332210000
Q ss_pred -----------HHHHHHHHhhhcCcEEEcCe-EEEEeC--CeEEecCCcEEeccEEEEecCCCCc--cccccCCCCCCC
Q 018704 286 -----------LRHYATTQLSKSGVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS--TLVKSLDLPKSP 348 (351)
Q Consensus 286 -----------~~~~~~~~l~~~gV~~~~~~-v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~--~~~~~~gl~~~~ 348 (351)
........+++.||+++++. |++++. ..|.++||++++||.+|+|+|..|+ ++....|+++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~ 152 (213)
T d1m6ia1 74 RSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDS 152 (213)
T ss_dssp EESBSSCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCT
T ss_pred hhhhcCChhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhhccchhhhh
Confidence 00111223567899999995 999965 5899999999999999999998766 566666777643
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.04 E-value=3.2e-10 Score=86.08 Aligned_cols=86 Identities=17% Similarity=0.283 Sum_probs=65.3
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-E
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-V 306 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v 306 (351)
-+.|+|+|||||++|+|.|.+|+++. .+|++++|++.++. ++.. ..+..+..+|+++++. +
T Consensus 32 frgk~V~VvGgGdsA~e~A~~L~~~a--------------~~V~li~r~~~~ra-~~~~---~~~l~~~~nI~v~~~~~v 93 (130)
T d1vdca2 32 FRNKPLAVIGGGDSAMEEANFLTKYG--------------SKVYIIHRRDAFRA-SKIM---QQRALSNPKIDVIWNSSV 93 (130)
T ss_dssp GTTSEEEEECCSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCS-CHHH---HHHHHTCTTEEEECSEEE
T ss_pred hCCCEEEEEcCchHHHHHHHHHhCCC--------------CcEEEEEecccccc-chhh---hhccccCCceEEEeccEE
Confidence 45579999999999999999999887 89999999876553 2222 2344456689999995 9
Q ss_pred EEEeCC-------eEEec---CC--cEEeccEEEEec
Q 018704 307 KDVDSQ-------KLILN---DG--TEVPYGLLVWST 331 (351)
Q Consensus 307 ~~v~~~-------~v~~~---~g--~~~~~D~vi~a~ 331 (351)
.++.++ .+.+. +| +++++|.|++++
T Consensus 94 ~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 94 VEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp EEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred EEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 998763 34443 23 469999999985
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.04 E-value=5.5e-10 Score=83.58 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=67.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
+.+++|||||+.|+.+|..|++.|.+|+|+|+.+++. + . +...+.+.........++.++. ..|
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il-----~-------~---~d~~~~~~l~~~l~~~GI~i~~~~~v 86 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL-----S-------G---FEKQMAAIIKKRLKKKGVEVVTNALA 86 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-----T-------T---SCHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEecceec-----c-------c---ccchhHHHHHHHHHhcCCEEEcCCEE
Confidence 4789999999999999999999999999999988742 0 0 1122333333334445777655 588
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEe
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIA 177 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviA 177 (351)
+.++...+.+.+....+++ ..++.+|.|++.
T Consensus 87 ~~i~~~~~~~~v~~~~~g~------~~~i~~D~Vlvs 117 (117)
T d1ebda2 87 KGAEEREDGVTVTYEANGE------TKTIDADYVLVT 117 (117)
T ss_dssp EEEEEETTEEEEEEEETTE------EEEEEESEEEEC
T ss_pred EEEEEcCCEEEEEEEeCCC------EEEEEeEEEEEC
Confidence 8898777766665544543 237999999873
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.03 E-value=4.6e-10 Score=90.95 Aligned_cols=93 Identities=27% Similarity=0.362 Sum_probs=65.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHH----------HHhhhcCcEE
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT----------TQLSKSGVRL 301 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~----------~~l~~~gV~~ 301 (351)
+|+|||||++|+|+|..|.+++. ..+++++.+....+-..+.+...+. +.....+|++
T Consensus 5 ~VvIIGgG~~G~e~A~~l~~~g~------------~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 72 (183)
T d1d7ya1 5 PVVVLGAGLASVSFVAELRQAGY------------QGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEW 72 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTC------------CSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEE
T ss_pred CEEEECccHHHHHHHHHHHhcCC------------ceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEE
Confidence 79999999999999999988761 1344444443222211122211111 1234568999
Q ss_pred EcCe-EEEEeCC--eEEecCCcEEeccEEEEecCCCCc
Q 018704 302 VRGI-VKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 302 ~~~~-v~~v~~~--~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+. ++++..+ .+.+.+|+++++|.+|+|+|..|+
T Consensus 73 ~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~ 110 (183)
T d1d7ya1 73 LLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPR 110 (183)
T ss_dssp EETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred EEeccccccccccceeEecCCcEeeeeeEEEEEEEEcc
Confidence 9995 9888764 788999999999999999999997
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.03 E-value=1.3e-09 Score=89.36 Aligned_cols=93 Identities=17% Similarity=0.314 Sum_probs=68.2
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHH--------------HHHHHHhhhc
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLR--------------HYATTQLSKS 297 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~--------------~~~~~~l~~~ 297 (351)
||+|||||++|+|+|..|.+++ ++.+|+++++++..+..+..+. ....+.+++.
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~------------~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 69 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLH------------PDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESR 69 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHC------------TTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHT
T ss_pred EEEEECCcHHHHHHHHHHHhcC------------CCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHC
Confidence 7999999999999999998764 2378999998754432222222 1223567888
Q ss_pred CcEEEcCe-EEEEeC--CeEEe---cCCc--EEeccEEEEecCCCCc
Q 018704 298 GVRLVRGI-VKDVDS--QKLIL---NDGT--EVPYGLLVWSTGVGPS 336 (351)
Q Consensus 298 gV~~~~~~-v~~v~~--~~v~~---~~g~--~~~~D~vi~a~G~~p~ 336 (351)
||+++.+. |++++. +++.+ .+|+ ++++|.+|+|+|.+|+
T Consensus 70 gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~ 116 (198)
T d1nhpa1 70 GVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPF 116 (198)
T ss_dssp TCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred CcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceee
Confidence 99999995 999986 45654 3443 4789999999997654
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.03 E-value=1.3e-10 Score=95.04 Aligned_cols=110 Identities=18% Similarity=0.138 Sum_probs=69.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchh--hhh-----hhcccccccccccchhccchhhhcCCCe
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL--LAS-----TCVGTLEFRSVAEPIARIQPAISREPGS 133 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (351)
.++||+||||||+||+||.+|+|.|++|+|+|+.......+. +.. ...+.+... ....+...........++
T Consensus 4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~el~~~~~~q~~~~g~ 82 (192)
T d1vdca1 4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGI-LGVELTDKFRKQSERFGT 82 (192)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCE-EHHHHHHHHHHHHHHTTC
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccc-cchHHHHHHHHHHHhhcc
Confidence 358999999999999999999999999999997654322110 000 000111110 011111111112233467
Q ss_pred EEEEEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCC
Q 018704 134 YFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181 (351)
Q Consensus 134 ~~~~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 181 (351)
.+...+|..++...+.+.+.+ ... ...+|.+++++|..
T Consensus 83 ~i~~~~V~~~~~~~~~~~v~~--~~~--------~~~~~~~~~a~g~~ 120 (192)
T d1vdca1 83 TIFTETVTKVDFSSKPFKLFT--DSK--------AILADAVILAIGAV 120 (192)
T ss_dssp EEECCCCCEEECSSSSEEEEC--SSE--------EEEEEEEEECCCEE
T ss_pred eeeeeeEEecccccCcEEecc--cce--------eeeeeeEEEEeeee
Confidence 777778999998888766643 233 78999999999964
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.00 E-value=5.5e-10 Score=88.94 Aligned_cols=103 Identities=25% Similarity=0.383 Sum_probs=68.9
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCccccc-hhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEee
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHCA 141 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~ 141 (351)
+|+|||||++|+.+|..|++ +.+|+|+++++...+. +.+.....+...... +......+....++.++. ..++
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~v~ 76 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNR----LFPYSLDWYRKRGIEIRLAEEAK 76 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGG----GCSSCHHHHHHHTEEEECSCCEE
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhh----hhHHHHHHHHhccceeeeecccc
Confidence 79999999999999999976 6799999998876665 333333333322221 112222223334566554 4788
Q ss_pred eEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcC
Q 018704 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (351)
Q Consensus 142 ~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~ 183 (351)
.++...+.+.. ++. ++.||.+|+|+|..|.
T Consensus 77 ~i~~~~~~~~~----~~~--------~i~~D~li~a~G~~~~ 106 (167)
T d1xhca1 77 LIDRGRKVVIT----EKG--------EVPYDTLVLATGAPNV 106 (167)
T ss_dssp EEETTTTEEEE----SSC--------EEECSEEEECCCEECC
T ss_pred ccccccccccc----ccc--------ccccceeEEEEEecCC
Confidence 88877766542 454 8999999999998654
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.00 E-value=5.7e-10 Score=83.49 Aligned_cols=95 Identities=12% Similarity=0.152 Sum_probs=65.2
Q ss_pred CCcEEEECCchhHHHHHHhhh---ccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGID---TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~---~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
+++++|||||+.|+.+|..|+ +.|.+|+++|+.+.+. + .+...+.+.........++.++..
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-----~----------~~d~~~~~~~~~~l~~~GI~v~~~ 82 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-----R----------GFDSELRKQLTEQLRANGINVRTH 82 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-----T----------TSCHHHHHHHHHHHHHTTEEEEET
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-----c----------cccchhhHHHHHHHhhCcEEEEcC
Confidence 478999999999999997655 4689999999977632 0 112223333333445558887764
Q ss_pred -EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 139 -~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
.++.+....+.......++|. ++.||.||+|||
T Consensus 83 ~~v~~i~~~~~g~~~v~~~~g~--------~i~~D~Vi~a~G 116 (117)
T d1feca2 83 ENPAKVTKNADGTRHVVFESGA--------EADYDVVMLAIG 116 (117)
T ss_dssp CCEEEEEECTTSCEEEEETTSC--------EEEESEEEECSC
T ss_pred CEEEEEEECCCCEEEEEECCCC--------EEEcCEEEEecC
Confidence 788887544322222336776 899999999998
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.99 E-value=2.1e-10 Score=98.61 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=34.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
...+||||||||++|+.+|..+++.|.+|++||+.+.+
T Consensus 40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~l 77 (261)
T d1mo9a1 40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL 77 (261)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcc
Confidence 45689999999999999999999999999999987765
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=8.9e-10 Score=83.37 Aligned_cols=101 Identities=13% Similarity=0.118 Sum_probs=66.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
+++|+|||||+.|+.+|..|++.|.+|+|+++.+++. +. +...+.+.........++.++. .++
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l-----~~----------~d~~~~~~~~~~l~~~Gv~i~~~~~v 86 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-----RS----------FDSMISTNCTEELENAGVEVLKFSQV 86 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-----TT----------SCHHHHHHHHHHHHHTTCEEETTEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc-----cc----------hhhHHHHHHHHHHHHCCCEEEeCCEE
Confidence 3689999999999999999999999999999988642 00 1122222322233445777654 578
Q ss_pred eeEeCCCCEEEEEe--ecCccccCCCceeEeeccEEEEecC
Q 018704 141 AGIDTDNHVVHCET--VTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 141 ~~i~~~~~~v~~~~--~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
+.+......+.+.. ...+. .......+.+|.|++|+|
T Consensus 87 ~~i~~~~~g~~v~~~~~~~g~--~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 87 KEVKKTLSGLEVSMVTAVPGR--LPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp EEEEEETTEEEEEEEECCTTS--CCEEEEEEEESEEEECSC
T ss_pred EEEEEcCCeEEEEEEEccCCc--CcCccccccCCEEEEEeC
Confidence 88876655544432 12221 111223678999999998
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.99 E-value=3.8e-10 Score=91.46 Aligned_cols=107 Identities=24% Similarity=0.381 Sum_probs=68.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceE--EEEcCCCccccc-hhhhhhhcccccccccccchhccchhhhcCCCeEEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDV--VCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v--~vie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (351)
++.+|+|||||++|+.+|..|++.|.++ ++++++....|. +.+......... ............++.++.
T Consensus 2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~i~~~~ 74 (183)
T d1d7ya1 2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGD-------AEKIRLDCKRAPEVEWLL 74 (183)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCC-------GGGSBCCGGGSTTCEEEE
T ss_pred CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhh-------hhhHHHHHhhcCCeEEEE
Confidence 3467999999999999999999988764 444454444332 211111110000 111111123334566655
Q ss_pred -EEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCC
Q 018704 138 -SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (351)
Q Consensus 138 -~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p 185 (351)
.++..++.+...+.+ .+++ ++.||.||+|+|..|+..
T Consensus 75 ~~~v~~i~~~~~~~~~---~~g~--------~~~~D~vi~a~G~~p~~~ 112 (183)
T d1d7ya1 75 GVTAQSFDPQAHTVAL---SDGR--------TLPYGTLVLATGAAPRAV 112 (183)
T ss_dssp TCCEEEEETTTTEEEE---TTSC--------EEECSEEEECCCEEECCE
T ss_pred eccccccccccceeEe---cCCc--------EeeeeeEEEEEEEEcccc
Confidence 478889988888765 5676 999999999999887654
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.98 E-value=1.8e-10 Score=96.91 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=25.9
Q ss_pred CeEEEEeCCeEEecCCcEEeccEEEEecCC
Q 018704 304 GIVKDVDSQKLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 304 ~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~ 333 (351)
+.|.++++++|+++|| ++++|+||+||||
T Consensus 207 ~~I~~~~~~gV~~~dg-~~~~D~VV~ATGf 235 (235)
T d1w4xa2 207 APIETITPRGVRTSER-EYELDSLVLATGF 235 (235)
T ss_dssp SCEEEECSSEEEESSC-EEECSEEEECCCC
T ss_pred CCCeEEeCCeEEECCC-EEcCCEEEeCCCC
Confidence 3588999999999988 5899999999997
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.98 E-value=1.5e-09 Score=81.83 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=65.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+++.. ..+...+...........++.++.. .+
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~--------------~~~d~~~~~~~~~~l~~~gv~~~~~~~v 95 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG--------------VYLDKEFTDVLTEEMEANNITIATGETV 95 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT--------------TTCCHHHHHHHHHHHHTTTEEEEESCCE
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccc--------------cccchhhHHHHHHHhhcCCeEEEeCceE
Confidence 46899999999999999999999999999999876310 0112223333334455568887664 78
Q ss_pred eeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEec
Q 018704 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAt 178 (351)
..++.+++...+. .+++ ++.+|.||+|.
T Consensus 96 ~~i~~~~~~~~v~--~dg~--------~i~~D~vi~aI 123 (123)
T d1nhpa2 96 ERYEGDGRVQKVV--TDKN--------AYDADLVVVAV 123 (123)
T ss_dssp EEEECSSBCCEEE--ESSC--------EEECSEEEECS
T ss_pred EEEEcCCCEEEEE--eCCC--------EEECCEEEEEC
Confidence 8887765432222 4666 89999999983
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=98.96 E-value=3e-10 Score=91.53 Aligned_cols=99 Identities=23% Similarity=0.285 Sum_probs=70.4
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC-CC-CCcHHHH---------HHHHHHhhhcC
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-LS-SFDDRLR---------HYATTQLSKSG 298 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-l~-~~~~~~~---------~~~~~~l~~~g 298 (351)
+|||+|||||.+|+++|..|.+.+ +..+|+++++++. .. ....... ......+...+
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~------------~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLAD------------PSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHG 69 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHC------------TTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTT
T ss_pred CCcEEEECccHHHHHHHHHHHHcC------------CCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccc
Confidence 469999999999999999998764 2379999998752 11 1111111 01112345668
Q ss_pred cEEEcCeEEEEeC--CeEEecCCcEEeccEEEEecCCCCc-cccc
Q 018704 299 VRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS-TLVK 340 (351)
Q Consensus 299 V~~~~~~v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~ 340 (351)
+.++.+++..... ..+.+.+++++++|.+|+|||.+|+ +++.
T Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~ 114 (186)
T d1fcda1 70 IQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIE 114 (186)
T ss_dssp EEEECCCEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTTST
T ss_pred eeEeeeeeEeeeeccceeecccceeeccceEEEEeccccchhhhh
Confidence 8888887666654 4678889999999999999999888 4443
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=1.8e-10 Score=97.17 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=32.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.|||+|||||||||+||.++++.|++|+|||+.+.
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~ 37 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP 37 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 48999999999999999999999999999996543
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.5e-09 Score=83.47 Aligned_cols=94 Identities=16% Similarity=0.246 Sum_probs=69.0
Q ss_pred CcEEEECCchhHHHHHHhhhc----cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 63 PRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
.+++|||||++|+.+|..|++ .|.+|+++++++.... ..+...+...........++.++..
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~--------------~~~~~~~~~~~~~~l~~~GV~~~~~ 103 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG--------------KILPEYLSNWTMEKVRREGVKVMPN 103 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT--------------TTSCHHHHHHHHHHHHTTTCEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc--------------ccCCHHHHHHHHHHHHhCCcEEEeC
Confidence 689999999999999998853 6899999999876320 0012223333333455668887764
Q ss_pred -EeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 139 -~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
.|..++.++..+.++. ++|+ ++.+|.||+|+|
T Consensus 104 ~~V~~i~~~~~~~~v~l-~~G~--------~i~aD~Vi~A~G 136 (137)
T d1m6ia2 104 AIVQSVGVSSGKLLIKL-KDGR--------KVETDHIVAAVG 136 (137)
T ss_dssp CCEEEEEEETTEEEEEE-TTSC--------EEEESEEEECCC
T ss_pred CEEEEEEecCCEEEEEE-CCCC--------EEECCEEEEeec
Confidence 7888888777776644 6777 899999999998
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.91 E-value=1.9e-09 Score=81.40 Aligned_cols=97 Identities=11% Similarity=0.161 Sum_probs=66.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
+.+++|||||+.|+.+|..+++.|.+|+++|+.+.+. + .+...+...........++.++. .++
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il-----~----------~~d~~~~~~l~~~l~~~gv~~~~~~~v 90 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-----Q----------GADRDLVKVWQKQNEYRFDNIMVNTKT 90 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS-----T----------TSCHHHHHHHHHHHGGGEEEEECSCEE
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc-----c----------cchhhHHHHHHHHHHHcCcccccCcEE
Confidence 4789999999999999999999999999999987642 0 01222333333334445666554 478
Q ss_pred eeEeCCCCEEEEEee-cCccccCCCceeEeeccEEEEecC
Q 018704 141 AGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 141 ~~i~~~~~~v~~~~~-~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
..+......+.+... .++. ..++.+|.|++|+|
T Consensus 91 ~~v~~~~~g~~v~~~~~~g~------~~~i~~D~vl~A~G 124 (125)
T d1ojta2 91 VAVEPKEDGVYVTFEGANAP------KEPQRYDAVLVAAG 124 (125)
T ss_dssp EEEEEETTEEEEEEESSSCC------SSCEEESCEEECCC
T ss_pred EEEEEcCCcEEEEEEeCCCC------eEEEEcCEEEEecC
Confidence 888766665544332 2222 12799999999998
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.91 E-value=9.3e-10 Score=82.89 Aligned_cols=88 Identities=19% Similarity=0.315 Sum_probs=62.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Eee
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (351)
.+++|||||+.|+.+|..|++.|.+|+|+|+.+.+. + +...+.+.........++.++.. ++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~--~--------------~d~~~~~~~~~~l~~~GV~~~~~~~v~ 96 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL--G--------------LDEELSNMIKDMLEETGVKFFLNSELL 96 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT--T--------------CCHHHHHHHHHHHHHTTEEEECSCCEE
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccccc--C--------------CCHHHHHHHHHHHHHCCcEEEeCCEEE
Confidence 689999999999999999999999999999987642 0 11222222223344457887654 666
Q ss_pred eEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCC
Q 018704 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (351)
Q Consensus 142 ~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 180 (351)
.++.+ .+. .+++ .+.+|.||+|+|.
T Consensus 97 ~~~~~--~v~----~~~~--------~i~~D~vi~a~Gv 121 (122)
T d1xhca2 97 EANEE--GVL----TNSG--------FIEGKVKICAIGI 121 (122)
T ss_dssp EECSS--EEE----ETTE--------EEECSCEEEECCE
T ss_pred EEeCC--EEE----eCCC--------EEECCEEEEEEEe
Confidence 66543 332 2455 8999999999994
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.90 E-value=1.1e-09 Score=93.55 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=32.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...+|+||||||+||++|..|++.|++|+|||+++.
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 347899999999999999999999999999998654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.90 E-value=2.1e-09 Score=80.74 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=63.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+. + .....+.+.........++.++. .++
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l--~-------------~~d~~~~~~~~~~l~~~gI~v~~~~~v 86 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK--L-------------IKDNETRAYVLDRMKEQGMEIISGSNV 86 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT--T-------------CCSHHHHHHHHHHHHHTTCEEESSCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh--c-------------ccccchhhhhhhhhhccccEEEcCCEE
Confidence 3799999999999999999999999999999977532 0 01111222222233344666554 477
Q ss_pred eeEeCCCC--EEEE--EeecCccccCCCceeEeeccEEEEecC
Q 018704 141 AGIDTDNH--VVHC--ETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 141 ~~i~~~~~--~v~~--~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
+.++.+.+ ...+ ....+++ ++.+|.||+|+|
T Consensus 87 ~~i~~~~~~~~~~~~~~~~~~~~--------~i~~D~Vi~a~G 121 (121)
T d1mo9a2 87 TRIEEDANGRVQAVVAMTPNGEM--------RIETDFVFLGLG 121 (121)
T ss_dssp EEEEECTTSBEEEEEEEETTEEE--------EEECSCEEECCC
T ss_pred EEEEecCCceEEEEEEEeCCCCE--------EEEcCEEEEEEC
Confidence 77876543 1112 1222333 899999999998
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.90 E-value=2e-09 Score=80.32 Aligned_cols=93 Identities=13% Similarity=0.225 Sum_probs=63.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
+.+|+|||||+.|+.+|..|++.|.+|+|+|+.+++. ..+...+.+.........++.++. .+|
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il---------------~~~d~~~~~~~~~~l~~~gV~i~~~~~v 86 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL---------------RKFDESVINVLENDMKKNNINIVTFADV 86 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC---------------TTSCHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc---------------ccccHHHHHHHHHHHHhCCCEEEECCEE
Confidence 4789999999999999999999999999999987631 011223333333333445777765 478
Q ss_pred eeEeCCC-CEEEEEeecCccccCCCceeEe-eccEEEEec
Q 018704 141 AGIDTDN-HVVHCETVTDELRTLEPWKFKI-SYDKLVIAL 178 (351)
Q Consensus 141 ~~i~~~~-~~v~~~~~~~~~~~~~~~~~~~-~~d~lviAt 178 (351)
+.++... ..+.++. ++|+ .+ .||.||+|.
T Consensus 87 ~~i~~~~~~~~~v~~-~~G~--------~~~~~D~Vi~AI 117 (117)
T d1onfa2 87 VEIKKVSDKNLSIHL-SDGR--------IYEHFDHVIYCV 117 (117)
T ss_dssp EEEEESSTTCEEEEE-TTSC--------EEEEESEEEECC
T ss_pred EEEEEcCCCeEEEEE-CCCC--------EEEeCCEEEEeC
Confidence 8886443 3444433 4565 44 689999983
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.89 E-value=8.6e-10 Score=95.94 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=32.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+.+|+||||||+||++|..|++.|++|+|||+++.
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 46999999999999999999999999999998763
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.89 E-value=4.1e-10 Score=93.96 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=32.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.++||+|||||||||+||.++++.|.+|+|||+..
T Consensus 2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~ 36 (223)
T d1ebda1 2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (223)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence 35899999999999999999999999999999865
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=5.5e-10 Score=93.15 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=32.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.|||+||||||+|++||.++++.|.+|+|||++..
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~ 37 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKL 37 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCC
Confidence 48999999999999999999999999999998653
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.86 E-value=2.9e-09 Score=85.97 Aligned_cols=112 Identities=20% Similarity=0.262 Sum_probs=65.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCC--Cccccc--hhhhhhhcccccccccccchhccchhhhcCCCeEEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR--NHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (351)
.+.||||||||++|+.+|..|++.|.+++|++.. +...+. +.......+..... ..................
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 77 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAE----SLYLRTPDAYAAQNIQLL 77 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSG----GGBSSCHHHHHHTTEEEE
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhh----hhhhhhhhhhcccceeee
Confidence 3579999999999999999999999886666543 333322 11111111111111 111111111122223322
Q ss_pred -EEEeeeEeCCCCEEEEEeecCccccCCCceeEeeccEEEEecCCCcCCCCC
Q 018704 137 -LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (351)
Q Consensus 137 -~~~v~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~p~~p~i 187 (351)
...+..++.+...+.. .++. ++.+|.+++++|..|..|.+
T Consensus 78 ~~~~~~~~~~~~~~v~~---~~~~--------~i~~d~~i~~~G~~~~~~~~ 118 (185)
T d1q1ra1 78 GGTQVTAINRDRQQVIL---SDGR--------ALDYDRLVLATGGRPLIPNC 118 (185)
T ss_dssp CSCCEEEEETTTTEEEE---TTSC--------EEECSEEEECCCEEEEEECC
T ss_pred ccceeeeecccccEEEe---ecee--------EEEeeeeeeeeecccCCCCc
Confidence 3356667777776654 3455 89999999999998776654
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=4e-09 Score=79.24 Aligned_cols=98 Identities=11% Similarity=0.122 Sum_probs=62.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE-Ee
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (351)
+.+++|||||+.|+.+|..|++.|.+|+|++++..+. .+...+.+.........++.++.. .|
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~----------------~~D~~~~~~l~~~l~~~Gv~i~~~~~v 83 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR----------------GFDQDMANKIGEHMEEHGIKFIRQFVP 83 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSST----------------TSCHHHHHHHHHHHHHTTEEEEESCEE
T ss_pred CCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhc----------------cCCHHHHHHHHHHHHHCCCEEEECCEE
Confidence 3689999999999999999999999999999753211 112223333333455558887654 55
Q ss_pred eeEeC----CCCEEEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 141 AGIDT----DNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 141 ~~i~~----~~~~v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
+.+.. ....+.++....+. .+.....||.|++|+|
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 84 TKIEQIEAGTPGRLKVTAKSTNS----EETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEEEECSTTCEEEEEEECTTS----CEEEEEEESEEECCCC
T ss_pred EEEEEecCCCccEEEEEEEECCC----CcEEEEECCEEEEEeC
Confidence 55532 22233333222211 0123667999999998
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.86 E-value=3e-09 Score=93.31 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=33.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+||||||||++||++|+.|++.|++|+|||+.+.
T Consensus 15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~ 50 (308)
T d1y0pa2 15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPV 50 (308)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 458999999999999999999999999999998754
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.84 E-value=5.2e-10 Score=82.23 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=53.0
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEE
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVK 307 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~ 307 (351)
.++|+|+|||+|+||+|+|.+|+..+ .+++++.+....... ..++... ..+.
T Consensus 30 f~gK~VlVVG~g~Sa~dia~~l~~~a--------------k~v~~~~~r~~~~~~-------------~~~~~~~-~~i~ 81 (107)
T d2gv8a2 30 FVGESVLVVGGASSANDLVRHLTPVA--------------KHPIYQSLLGGGDIQ-------------NESLQQV-PEIT 81 (107)
T ss_dssp GTTCCEEEECSSHHHHHHHHHHTTTS--------------CSSEEEECTTCCSCB-------------CSSEEEE-CCEE
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHhc--------------CEEEEEEecCccccc-------------cccceec-CCee
Confidence 34569999999999999999998776 667777665322111 1122222 2467
Q ss_pred EEeC--CeEEecCCcEEe-ccEEEEe
Q 018704 308 DVDS--QKLILNDGTEVP-YGLLVWS 330 (351)
Q Consensus 308 ~v~~--~~v~~~~g~~~~-~D~vi~a 330 (351)
+++. ..+.+.||..++ +|.||+|
T Consensus 82 ~~~~~~~~v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 82 KFDPTTREIYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp EEETTTTEEEETTTEEECCCSEEEEC
T ss_pred EEecCCCEEEEcCCCEEeCCCEEEEC
Confidence 7765 469999999887 7999997
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=3.7e-09 Score=84.73 Aligned_cols=85 Identities=21% Similarity=0.258 Sum_probs=67.2
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----------CC--CcHHHHHHHHHHhh
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----------SS--FDDRLRHYATTQLS 295 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l----------~~--~~~~~~~~~~~~l~ 295 (351)
.+.|+|+|||||++|++.|..|++.| .+|+++++.+.+ +. ...++.+.+.+.++
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G--------------~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~ 106 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARG--------------HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIE 106 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhc--------------cceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhh
Confidence 45579999999999999999999887 999999997432 11 12466778888889
Q ss_pred hcCcEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..||++++|+ |+. + ....+|.||+|||..|.
T Consensus 107 ~~gV~i~l~~~Vt~---------~-~~~~~d~vilAtG~~~~ 138 (179)
T d1ps9a3 107 VTGVTLKLNHTVTA---------D-QLQAFDETILASGIPNR 138 (179)
T ss_dssp HHTCEEEESCCCCS---------S-SSCCSSEEEECCCEECC
T ss_pred cCCeEEEeCCEEcc---------c-ccccceeEEEeecCCCc
Confidence 9999999995 531 2 23578999999998876
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.81 E-value=4.7e-09 Score=82.01 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=58.7
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--CCCCcHHHHHHHHHHhhhcCcEEEcCe
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--LSSFDDRLRHYATTQLSKSGVRLVRGI 305 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--l~~~~~~~~~~~~~~l~~~gV~~~~~~ 305 (351)
...++|+|||||++|+|+|..+.++|+ ..|++++|.+. ++....+ ...+...+++++...
T Consensus 43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA-------------~~V~vi~rr~~~~~~a~~~~-----~~~a~~~~~~~~~~~ 104 (153)
T d1gtea3 43 SIRGAVIVLGAGDTAFDCATSALRCGA-------------RRVFLVFRKGFVNIRAVPEE-----VELAKEEKCEFLPFL 104 (153)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTTC-------------SEEEEECSSCGGGCCSCHHH-----HHHHHHTTCEEECSE
T ss_pred cCCCEEEEECCChhHHHHHHHHHHcCC-------------cceeEEEeCChhhhccchhh-----eeecccccceeEecc
Confidence 345699999999999999999999873 67999998643 2222222 234456788888873
Q ss_pred -EEEEeC--C---eEEe------cCC---------cEEeccEEEEecC
Q 018704 306 -VKDVDS--Q---KLIL------NDG---------TEVPYGLLVWSTG 332 (351)
Q Consensus 306 -v~~v~~--~---~v~~------~~g---------~~~~~D~vi~a~G 332 (351)
++++.. + ++.. ++| .+++||.||+|+|
T Consensus 105 ~~~ei~~~~~~~~~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG 152 (153)
T d1gtea3 105 SPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFG 152 (153)
T ss_dssp EEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSC
T ss_pred ccEEEEecCCceEEEEEEEeeECCCCCEecCCCCEEEEECCEEEECcC
Confidence 555432 1 1111 122 3589999999998
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.80 E-value=4.1e-10 Score=92.00 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=33.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCce-EEEEcCCCccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMV 98 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~~~~ 98 (351)
+++|+||||||+||+||.+|++.|++ |+|||+.+.+.
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g 41 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG 41 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence 47999999999999999999999995 99999988753
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.80 E-value=1.1e-08 Score=76.82 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=62.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEE-EEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (351)
+.+++|||||+.|+.+|..|++.|.+|+|+|+.+++. +. +...+........+..++.++. .+|
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l------------~~---~d~ei~~~l~~~l~~~GV~i~~~~~v 87 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG------------AS---MDGEVAKATQKFLKKQGLDFKLSTKV 87 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS------------SS---SCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc------------hh---hhhhhHHHHHHHHHhccceEEeCCEE
Confidence 4689999999999999999999999999999988642 00 1122333333334445777654 577
Q ss_pred eeEeCC--CCEEEEEee--cCccccCCCceeEeeccEEEEe
Q 018704 141 AGIDTD--NHVVHCETV--TDELRTLEPWKFKISYDKLVIA 177 (351)
Q Consensus 141 ~~i~~~--~~~v~~~~~--~~~~~~~~~~~~~~~~d~lviA 177 (351)
+.+... ...+.+... ..++ ..++.+|.|++|
T Consensus 88 ~~v~~~~~~~~v~~~~~~~~~~~------~~~ie~D~vlvA 122 (122)
T d1v59a2 88 ISAKRNDDKNVVEIVVEDTKTNK------QENLEAEVLLVA 122 (122)
T ss_dssp EEEEEETTTTEEEEEEEETTTTE------EEEEEESEEEEC
T ss_pred EEEEEeCCCcEEEEEEEeCCCCC------eEEEEeCEEEEC
Confidence 877653 334433321 1222 237899999987
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=1.6e-09 Score=91.48 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=35.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
+..+||||||||++||+||..|++.|++|+|||++++..
T Consensus 3 ~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G 41 (297)
T d2bcgg1 3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG 41 (297)
T ss_dssp CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence 457999999999999999999999999999999988753
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=5.6e-09 Score=84.20 Aligned_cols=32 Identities=22% Similarity=0.125 Sum_probs=30.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
+||+||||||+||+||.++++.|.+|+|||++
T Consensus 2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 79999999999999999999999999999975
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.77 E-value=8.4e-09 Score=77.59 Aligned_cols=96 Identities=20% Similarity=0.270 Sum_probs=65.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEE-EEEe
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHC 140 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 140 (351)
+.+++|||||+.||.+|..+++.|.+|+|+++.+... + .+...+...........++.++ ..++
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l--~-------------~~d~~~~~~l~~~l~~~GI~i~~~~~v 89 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV--P-------------TMDAEIRKQFQRSLEKQGMKFKLKTKV 89 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS--T-------------TSCHHHHHHHHHHHHHSSCCEECSEEE
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC--c-------------hhhhcchhhhhhhhhcccceEEcCCce
Confidence 4789999999999999999999999999999988642 0 0112222222223334466665 4578
Q ss_pred eeEeCCCCEEE--EEeecCccccCCCceeEeeccEEEEec
Q 018704 141 AGIDTDNHVVH--CETVTDELRTLEPWKFKISYDKLVIAL 178 (351)
Q Consensus 141 ~~i~~~~~~v~--~~~~~~~~~~~~~~~~~~~~d~lviAt 178 (351)
..++..++.+. ++..++++ +..+.+|.|++|.
T Consensus 90 ~~i~~~~~~~~v~~~~~~~g~------~~~i~~D~vLvAA 123 (123)
T d1dxla2 90 VGVDTSGDGVKLTVEPSAGGE------QTIIEADVVLVSA 123 (123)
T ss_dssp EEEECSSSSEEEEEEESSSCC------CEEEEESEEECCC
T ss_pred EEEEEccCeEEEEEEECCCCe------EEEEEcCEEEEcC
Confidence 88987665544 33333443 2378999999873
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.76 E-value=1.5e-08 Score=75.43 Aligned_cols=93 Identities=12% Similarity=0.168 Sum_probs=62.9
Q ss_pred CCcEEEECCchhHHHHHHhhhc---cCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEEEE
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (351)
+.+++|||||+.|+.+|..|++ .+.+|+|+|+.+.+. + .+...+........+..++.++..
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL-----~----------~~d~~~~~~l~~~l~~~GV~v~~~ 84 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-----R----------GFDHTLREELTKQLTANGIQILTK 84 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS-----T----------TSCHHHHHHHHHHHHHTTCEEEES
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh-----c----------ccchHHHHHHHHHHHhcCcEEEcC
Confidence 3689999999999999977655 566899999977632 0 112223333333344558887764
Q ss_pred -EeeeEeCCC-CEEEEEeecCccccCCCceeEeeccEEEEec
Q 018704 139 -HCAGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (351)
Q Consensus 139 -~v~~i~~~~-~~v~~~~~~~~~~~~~~~~~~~~~d~lviAt 178 (351)
+++.++... ..+.+ ..++|+ ++.||.|++|.
T Consensus 85 ~~v~~ie~~~~~~~~v-~~~~G~--------~i~~D~Vi~AI 117 (117)
T d1aoga2 85 ENPAKVELNADGSKSV-TFESGK--------KMDFDLVMMAI 117 (117)
T ss_dssp CCEEEEEECTTSCEEE-EETTSC--------EEEESEEEECS
T ss_pred CEEEEEEEcCCCeEEE-EECCCc--------EEEeCEEEEeC
Confidence 788887543 33444 336776 89999999983
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=98.72 E-value=1.8e-08 Score=88.88 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=33.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...||||||||++||+||+.|++.|++|+|||+.+.
T Consensus 22 et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~ 57 (322)
T d1d4ca2 22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI 57 (322)
T ss_dssp EECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred CcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 347999999999999999999999999999998754
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.71 E-value=3e-08 Score=80.60 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=77.9
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-----------------C-----CCcHHHHH
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-----------------S-----SFDDRLRH 288 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l-----------------~-----~~~~~~~~ 288 (351)
++|+|||||++|+++|..+++.+ .+|.++++.... . ..+.++..
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g--------------~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 71 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAE--------------LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTD 71 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHcC--------------CcEEEEEeecccccccccccccchhhhccccccccccchHHHH
Confidence 59999999999999999999987 889998864210 1 12357777
Q ss_pred HHHHHhhhcCcEEEcCeEEEEeCC---eEEecCCcEEeccEEEEecCCC-----Cc-cccccCCCCCCCCC
Q 018704 289 YATTQLSKSGVRLVRGIVKDVDSQ---KLILNDGTEVPYGLLVWSTGVG-----PS-TLVKSLDLPKSPGG 350 (351)
Q Consensus 289 ~~~~~l~~~gV~~~~~~v~~v~~~---~v~~~~g~~~~~D~vi~a~G~~-----p~-~~~~~~gl~~~~~G 350 (351)
.+.+++++.|+++..++|.+++.. .....+..+..+|.+++++|.. |+ .+++ -++++|++|
T Consensus 72 ~~~~q~~~~g~~i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~-~~veld~~G 141 (192)
T d1vdca1 72 KFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPATKFLD-GGVELDSDG 141 (192)
T ss_dssp HHHHHHHHTTCEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCEEESCGGGT-TSSCBCTTS
T ss_pred HHHHHHHhhcceeeeeeEEecccccCcEEecccceeeeeeeEEEEeeeeecccCchHHHhc-CceeecCCC
Confidence 888888889999988877776542 2334455678999999999853 55 4443 368888776
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.67 E-value=3.2e-08 Score=85.28 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=33.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhc-cCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~-~g~~v~vie~~~~~~ 98 (351)
..+||+||||||+||+||+.|++ .|++|+|||+++...
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~G 70 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPG 70 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCC
Confidence 34899999999999999999976 699999999987653
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=7.6e-09 Score=91.45 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=35.4
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
.++.||||||||+|||+||+.|++.|++|+|+|++++..
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~G 41 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG 41 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 345789999999999999999999999999999988754
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.66 E-value=7.7e-09 Score=91.18 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=34.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+++|+|||||++||+||++|++.|++|+|||+++..
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~ 65 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP 65 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 4579999999999999999999999999999998765
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.65 E-value=6.8e-09 Score=88.38 Aligned_cols=35 Identities=29% Similarity=0.602 Sum_probs=32.4
Q ss_pred CcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~~ 97 (351)
+||+|||||+|||+||+.|++.|+ +|+|+|+++..
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~ 36 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI 36 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 589999999999999999999997 69999998764
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.64 E-value=8.4e-09 Score=89.72 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=33.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
++|+|||||+|||+||++|++.|++|+|||+++..
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 36 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 36 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 68999999999999999999999999999998765
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.63 E-value=3.1e-08 Score=85.02 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=32.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~~ 97 (351)
.||+|||||||||++|..|++.|. +|+|+|+.+..
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~ 37 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI 37 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 689999999999999999999996 89999987654
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.63 E-value=2.7e-08 Score=87.45 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=33.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...||||||||++||+||+.|++.|.+|+|||+.+.
T Consensus 18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~ 53 (317)
T d1qo8a2 18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPF 53 (317)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 458999999999999999999999999999998754
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.63 E-value=8.9e-09 Score=92.98 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=35.6
Q ss_pred CCCCCCcEEEECCchhHHHHHHhhhc------cCceEEEEcCCCccc
Q 018704 58 KANEKPRVVVLGSGWAGCRLMKGIDT------SLYDVVCVSPRNHMV 98 (351)
Q Consensus 58 ~~~~~~~VvIIG~G~aGl~aA~~L~~------~g~~v~vie~~~~~~ 98 (351)
...+.+|||||||||||++||+.|++ .|++|+|||++....
T Consensus 28 ~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG 74 (380)
T d2gmha1 28 RFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG 74 (380)
T ss_dssp CCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred cccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCC
Confidence 33456999999999999999999997 899999999987653
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.63 E-value=2.4e-08 Score=83.83 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=28.6
Q ss_pred CcEEEECCchhHHHHHHhhhcc---CceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~---g~~v~vie~~~ 95 (351)
.+|+||||||||++||.++++. +.+|+|+|++.
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~ 37 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG 37 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence 4899999999999999988764 46899999864
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.63 E-value=7.2e-08 Score=80.31 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=36.7
Q ss_pred CCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHH
Q 018704 183 STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD 251 (351)
Q Consensus 183 ~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~ 251 (351)
+.++|||.+ ++++ .+.+|..+........... + ...+++|+|||+|++|+|+|+.+.+
T Consensus 2 R~L~IPGedl~gV~------~A~dfl~~~N~~p~~~~~~-~----~~~gk~VvVIGgGNVAlD~aR~l~r 60 (225)
T d1cjca1 2 QALDIPGEELPGVF------SARAFVGWYNGLPENRELA-P----DLSCDTAVILGQGNVALDVARILLT 60 (225)
T ss_dssp CCCCCTTTTSTTEE------EHHHHHHHHTTCGGGTTCC-C----CTTSSEEEEESCSHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCcE------eHHHHHHHHhCCccccccC-c----cccCceEEEECCchhHHHHHHHHhc
Confidence 457899975 3333 3455555543222222111 1 1246799999999999999999986
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=4.8e-09 Score=87.87 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=34.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
++|||+|||||||||+||.+|++.|.+|+|||+++.+
T Consensus 4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~ 40 (233)
T d1v59a1 4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL 40 (233)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 4699999999999999999999999999999987664
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.61 E-value=7.5e-08 Score=77.95 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=72.3
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC------------C-----CCcHHHHHHH
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------S-----SFDDRLRHYA 290 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l------------~-----~~~~~~~~~~ 290 (351)
.+.++|+|||||++|++.|..+++++ .+|+++++.... + ..+.++.+.+
T Consensus 3 ~k~~dVvIIGGGpaGl~AA~~~ar~g--------------~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~ 68 (190)
T d1trba1 3 TKHSKLLILGSGPAGYTAAVYAARAN--------------LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERM 68 (190)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHTTT--------------CCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHH
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--------------CceEEEEeecccccccccchhhhhhccccccchHHHHHHH
Confidence 44569999999999999999999987 899999874210 1 1235677778
Q ss_pred HHHhhhcCcEEEcCeEEEEeCC--e-EEecCCcEEeccEEEEecCCCCc
Q 018704 291 TTQLSKSGVRLVRGIVKDVDSQ--K-LILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 291 ~~~l~~~gV~~~~~~v~~v~~~--~-v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
..++.+.++.+..++|..+... . ........++++.+++++|..|.
T Consensus 69 ~~~~~~~~~~~~~~~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~ 117 (190)
T d1trba1 69 HEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117 (190)
T ss_dssp HHHHHHTTCEEECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred HHHHHhcCcEEecceeEEEecCCCcEEEEEeeeeEeeeeeeeecceeee
Confidence 8888899999998888777652 2 22334567899999999997654
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=98.60 E-value=1.3e-08 Score=88.32 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=33.0
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+||+|||||++||+||++|++.|++|+|+|+++..
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 35 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL 35 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 48999999999999999999999999999998775
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.60 E-value=3.5e-08 Score=79.37 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=67.9
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEe--CCCCCCCCc--------------HHHHHHHHHHh
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE--ANEILSSFD--------------DRLRHYATTQL 294 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~l~~~~--------------~~~~~~~~~~l 294 (351)
++|+|||||++|+|+|..|.+++ .+++++. +....+... ...........
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g--------------~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASG--------------WEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAY 69 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHHcC--------------CceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 59999999999999999999877 5555544 332221111 11111112334
Q ss_pred hhcCcEEEcCe-EEEEeC--CeEEecCCcEEeccEEEEecCCCCc----cccccCCCCC
Q 018704 295 SKSGVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS----TLVKSLDLPK 346 (351)
Q Consensus 295 ~~~gV~~~~~~-v~~v~~--~~v~~~~g~~~~~D~vi~a~G~~p~----~~~~~~gl~~ 346 (351)
...++.+..+. +..++. ..+.+.++.++++|.+++++|.+|+ .+++..+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~ 128 (185)
T d1q1ra1 70 AAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQV 128 (185)
T ss_dssp HHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCB
T ss_pred cccceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccc
Confidence 55677777774 666655 4788889999999999999998775 3455555544
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.56 E-value=2.8e-07 Score=76.12 Aligned_cols=106 Identities=24% Similarity=0.317 Sum_probs=73.0
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCC-----------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF----------------------------- 282 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~----------------------------- 282 (351)
.|+|||||++|+.+|..++++| .+|.++++...+.+.
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G--------------~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 70 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLG--------------FKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANH 70 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHT--------------CCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhc
Confidence 7999999999999999999988 899999986432110
Q ss_pred ---------c------------HHHHHHHHHHhhhcCcEEEcCeEEEEeCCeEEe----cCCcEEeccEEEEecCC----
Q 018704 283 ---------D------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL----NDGTEVPYGLLVWSTGV---- 333 (351)
Q Consensus 283 ---------~------------~~~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~----~~g~~~~~D~vi~a~G~---- 333 (351)
. ..+...+...++..+|+++.+...-........ .++..+++|.||+|||.
T Consensus 71 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~g 150 (221)
T d1dxla1 71 GVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKG 150 (221)
T ss_dssp TEEESCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECC
T ss_pred CeecccceecHHHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCccC
Confidence 0 011223334456778888877544444433332 23457899999999994
Q ss_pred -CCc-c--ccccCCCCCCCCCC
Q 018704 334 -GPS-T--LVKSLDLPKSPGGR 351 (351)
Q Consensus 334 -~p~-~--~~~~~gl~~~~~G~ 351 (351)
.|+ + .++++|+++|+.|.
T Consensus 151 r~p~~~~l~l~~~gv~~~~~G~ 172 (221)
T d1dxla1 151 RTPFTSGLNLDKIGVETDKLGR 172 (221)
T ss_dssp EEECCTTSCCTTTTCCBCSSSC
T ss_pred ccccCCCCChHhcCceEcCCCc
Confidence 455 3 35778999988873
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=8.6e-08 Score=83.97 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=31.1
Q ss_pred CCcEEEECCchhHHHHHHhhhcc--CceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~--g~~v~vie~~~~ 96 (351)
+.||+|||+|+|||+||+.+++. |.+|+|+|+...
T Consensus 5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~ 41 (311)
T d1kf6a2 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP 41 (311)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence 47999999999999999999885 789999997653
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.55 E-value=2.4e-08 Score=84.65 Aligned_cols=36 Identities=31% Similarity=0.316 Sum_probs=33.0
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..++||||||||++||++|+.|+++|++|+|||++.
T Consensus 4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 345799999999999999999999999999999865
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.55 E-value=1.6e-08 Score=84.58 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=34.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..|||+|||||||||+||.+|++.|++|+|||+.+.+
T Consensus 5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~ 41 (229)
T d1ojta1 5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41 (229)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 4589999999999999999999999999999987754
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=2.3e-08 Score=87.14 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=34.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
++||||||||++||+||..|++.|.+|+|+|++++..
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iG 37 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG 37 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence 3699999999999999999999999999999998853
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.50 E-value=3e-07 Score=77.50 Aligned_cols=90 Identities=21% Similarity=0.345 Sum_probs=69.1
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC---------------C--------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS---------------F-------------- 282 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~---------------~-------------- 282 (351)
.|+|||||++|+-+|..|++.| .+|.++++++.... .
T Consensus 4 DViIIGaG~aGl~aA~~la~~G--------------~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEG--------------ANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGR 69 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGG
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchh
Confidence 6999999999999999999877 89999987532100 0
Q ss_pred ---------------------------------------cHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C---eEEec
Q 018704 283 ---------------------------------------DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILN 317 (351)
Q Consensus 283 ---------------------------------------~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~---~v~~~ 317 (351)
...+.+.+.+.+++.||+++++. |+++.. + .++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~ 149 (251)
T d2i0za1 70 FLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQ 149 (251)
T ss_dssp GGHHHHHHSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET
T ss_pred hhhhhhhhhhhHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeC
Confidence 01233455667778899999995 888753 3 47788
Q ss_pred CCcEEeccEEEEecCCCC
Q 018704 318 DGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 318 ~g~~~~~D~vi~a~G~~p 335 (351)
+|+.+.||.||+|+|-..
T Consensus 150 ~g~~i~a~~vI~AtGg~S 167 (251)
T d2i0za1 150 TGEVLETNHVVIAVGGKS 167 (251)
T ss_dssp TCCEEECSCEEECCCCSS
T ss_pred CCCeEecCeEEEccCCcc
Confidence 999999999999999654
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=3.1e-08 Score=87.88 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=32.9
Q ss_pred cEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 64 ~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
||+|||||++||+||+.|++.|++|+|+|+++...
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~G 35 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVG 35 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSB
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCc
Confidence 79999999999999999999999999999988753
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.49 E-value=2e-07 Score=77.10 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=36.5
Q ss_pred CCCCCCCcc-ccccccCCHHHHHHHHHHHHHhhhccCCCCCCHhhhcccCeEEEECCChHHHHHHHHHHH
Q 018704 183 STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD 251 (351)
Q Consensus 183 ~~p~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~VvGgG~~a~e~a~~l~~ 251 (351)
+.++|||.+ ++++ .+..+..++..+......+ ....+++|+|||+|++|+|+|+.+.+
T Consensus 2 R~L~IPGedl~gV~------~A~dfl~~~N~~p~~~~~~-----~~~~gk~VvVIGgGNvAlD~AR~ll~ 60 (216)
T d1lqta1 2 RMLNIPGEDLPGSI------AAVDFVGWYNAHPHFEQVS-----PDLSGARAVVIGNGNVALDVARILLT 60 (216)
T ss_dssp CCCCCTTTTSTTEE------EHHHHHHHHTTCGGGTTCC-----CCCCSSEEEEECCSHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCcE------eHHHHHHHHhCCccccccC-----ccccCceEEEECCCchhHhhhhhhcc
Confidence 457899975 3444 4555555543222222221 11345799999999999999998874
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.49 E-value=4.3e-08 Score=86.06 Aligned_cols=37 Identities=16% Similarity=0.449 Sum_probs=34.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~ 98 (351)
+++|+|||||++||+||+.|++.|++|+|+|++++..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG 38 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG 38 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence 4789999999999999999999999999999999864
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.41 E-value=5e-07 Score=79.74 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=65.9
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----------------------------
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---------------------------- 280 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~---------------------------- 280 (351)
..|+|+|||||.+|+-+|..|.+.+ ...+|++++++.-+.
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~------------~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEK------------AFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIV 70 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTT------------CCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBC
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhC------------CCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccc
Confidence 3469999999999999999887533 125899999973210
Q ss_pred -------------------------------------CC--cHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C--eEEe
Q 018704 281 -------------------------------------SF--DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLIL 316 (351)
Q Consensus 281 -------------------------------------~~--~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~--~v~~ 316 (351)
.+ ...+.+.+.++.+..+..++.++ |++++. + .|++
T Consensus 71 ~~~~~~~~~s~~y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~ 150 (335)
T d2gv8a1 71 GPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTY 150 (335)
T ss_dssp CSSSCCBCCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEE
T ss_pred ccccccccccccchhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEE
Confidence 00 12456667777777788899995 888864 3 3555
Q ss_pred cCC---c---EEeccEEEEecCCC
Q 018704 317 NDG---T---EVPYGLLVWSTGVG 334 (351)
Q Consensus 317 ~~g---~---~~~~D~vi~a~G~~ 334 (351)
.++ . ...+|.||+|+|..
T Consensus 151 ~~~~~~~~~~~~~~d~VI~AtG~~ 174 (335)
T d2gv8a1 151 KGTKAGSPISKDIFDAVSICNGHY 174 (335)
T ss_dssp EESSTTCCEEEEEESEEEECCCSS
T ss_pred EecCCCCeEEEEEeeEEEEccccc
Confidence 432 2 35699999999975
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=98.36 E-value=1.9e-06 Score=72.71 Aligned_cols=91 Identities=16% Similarity=0.296 Sum_probs=68.1
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----------------------------CC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----------------------------SF 282 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~----------------------------~~ 282 (351)
..|+|||||++|+-+|..|++.| .+|.++++.+.+. .+
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G--------------~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~ 70 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLG--------------KSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHF 70 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTS
T ss_pred CcEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHH
Confidence 37999999999999999999877 8899998853110 00
Q ss_pred -------------------------------------cHHHHHHHHHHhhhcCcEEEcCe-EEEEeC--C-----eEEec
Q 018704 283 -------------------------------------DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q-----KLILN 317 (351)
Q Consensus 283 -------------------------------------~~~~~~~~~~~l~~~gV~~~~~~-v~~v~~--~-----~v~~~ 317 (351)
...+.+.+.+.+++.||+++++. |+++.. + .++..
T Consensus 71 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~ 150 (253)
T d2gqfa1 71 VKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV 150 (253)
T ss_dssp THHHHHHSCHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE
T ss_pred HHHHhhhhcccchhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEec
Confidence 01234556667788899999995 888753 1 24556
Q ss_pred CCcEEeccEEEEecCCCC
Q 018704 318 DGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 318 ~g~~~~~D~vi~a~G~~p 335 (351)
++.++.||.||+|||-.+
T Consensus 151 ~~~~~~a~~VIiAtGG~S 168 (253)
T d2gqfa1 151 NSTQWQCKNLIVATGGLS 168 (253)
T ss_dssp TTEEEEESEEEECCCCSS
T ss_pred CCEEEEeCEEEEcCCccc
Confidence 788999999999999654
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=98.35 E-value=9.2e-08 Score=84.48 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=33.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+||||||||+|||+||++|++.|.+|+|||+.+..
T Consensus 5 ~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~ 40 (336)
T d2bs2a2 5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK 40 (336)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 479999999999999999999999999999997653
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.35 E-value=6.9e-07 Score=75.93 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=30.4
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 278 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 278 (351)
..++|||||+.|+++|..++++| .+|+++++.+.
T Consensus 43 yDvvVIGgG~aG~~aA~~~a~~G--------------~kv~vve~~~~ 76 (261)
T d1mo9a1 43 YDAIFIGGGAAGRFGSAYLRAMG--------------GRQLIVDRWPF 76 (261)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCc
Confidence 36999999999999999999988 89999998643
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=98.29 E-value=1.7e-07 Score=83.67 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=34.0
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+.++||||||||++|+.+|.+|++.|++|+|+|+...
T Consensus 2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~ 38 (379)
T d2f5va1 2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI 38 (379)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCC
Confidence 4569999999999999999999999999999998654
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=3e-06 Score=67.57 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=72.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC---CC--------CC----CcHHHHHHHHHHhhh
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE---IL--------SS----FDDRLRHYATTQLSK 296 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~l--------~~----~~~~~~~~~~~~l~~ 296 (351)
.|+|||||++|+++|..+++.| .+|.+++++. +. +. ..+.+...+...+++
T Consensus 3 DViIIGgGpaGl~AAi~aar~G--------------~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKG--------------IRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDE 68 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred cEEEECcCHHHHHHHHHHHHcC--------------CeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhh
Confidence 7999999999999999999887 8999999741 11 11 125666777777888
Q ss_pred cCcEEEcCe-EEEEeCC-------eEEecCCcEEeccEEEEecCCCCc-cccccCCCCC
Q 018704 297 SGVRLVRGI-VKDVDSQ-------KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPK 346 (351)
Q Consensus 297 ~gV~~~~~~-v~~v~~~-------~v~~~~g~~~~~D~vi~a~G~~p~-~~~~~~gl~~ 346 (351)
.+++...+. +..+... .....++.++.++.++.++|..++ ......+++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 127 (184)
T d1fl2a1 69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVER 127 (184)
T ss_dssp SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCB
T ss_pred eeceeeccceeeeecccccccceeeeeeecceeeecccccccccccccccccccccccc
Confidence 888888874 5555431 344556778999999999997765 4444444433
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.27 E-value=2.2e-07 Score=77.52 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=30.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCce-EEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~ 95 (351)
+.|||+|||||||||+||.++++.|.+ |+|+|+..
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~ 37 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM 37 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence 469999999999999999999998875 88888653
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.26 E-value=2.2e-06 Score=74.24 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=71.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC--------C--------------C------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL--------S--------------S------ 281 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l--------~--------------~------ 281 (351)
.+|+|||||.+|+-+|..|.+.| .+|+++++.+ +- + .
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G--------------~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~ 73 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELG--------------RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQ 73 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCC--------------CCEEEEEcCCCcccccccCCCCCceeccccccccccccccccC
Confidence 48999999999999999998876 8899998752 10 0 0
Q ss_pred ---------CcHHHHHHHHHHhhhcCc--EEEcCe-EEEEe--CC----eEEecCCcEEeccEEEEecCCCCc
Q 018704 282 ---------FDDRLRHYATTQLSKSGV--RLVRGI-VKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 282 ---------~~~~~~~~~~~~l~~~gV--~~~~~~-v~~v~--~~----~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
-.+++.+.+++.+++.++ .+.+++ |+++. ++ .|.+.++.++++|.||+|+|+...
T Consensus 74 ~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~ 146 (298)
T d1w4xa1 74 EWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSD 146 (298)
T ss_dssp HCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCC
T ss_pred CCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccccc
Confidence 013566777888888888 588885 98885 22 688889999999999999997544
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.25 E-value=3e-06 Score=69.80 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=66.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--C--C---CC------------C---c---HHH
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--I--L---SS------------F---D---DRL 286 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~--l---~~------------~---~---~~~ 286 (351)
.|+|||||+.|++.|...++.+ .++.++..+. + + +. . . ...
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G--------------~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~ 69 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKG--------------VRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAF 69 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHH
T ss_pred cEEEECcCHHHHHHHHHHHHCC--------------CcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhH
Confidence 7999999999999999999988 8899987641 1 0 00 0 0 122
Q ss_pred HHHHHHHhh-hcCcEEEcCeEEEEe--CC---eEEecCCcEEeccEEEEecCCCCc
Q 018704 287 RHYATTQLS-KSGVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 287 ~~~~~~~l~-~~gV~~~~~~v~~v~--~~---~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
...+.+.++ ..++.++.++|.++. ++ +|++.+|.++.|..||++||.--+
T Consensus 70 raQ~k~~l~~~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL~ 125 (230)
T d2cula1 70 HARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG 125 (230)
T ss_dssp HHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred HHHHHHHHhhhcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCccee
Confidence 233444444 348999999887763 23 678899999999999999996554
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.23 E-value=2.7e-06 Score=70.01 Aligned_cols=105 Identities=20% Similarity=0.299 Sum_probs=71.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-------------------------------- 279 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l-------------------------------- 279 (351)
.++|||||+.|+.+|..+++.| .+|.++++..+.
T Consensus 5 DviVIG~GpaGl~aA~~aar~G--------------~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQLG--------------QKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGI 70 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTE
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcc
Confidence 7999999999999999999988 899999875421
Q ss_pred ----CCCcH------------HHHHHHHHHhhhcCcEEEcCeEEEEeCC--eEEec-CCcEEeccEEEEec--------C
Q 018704 280 ----SSFDD------------RLRHYATTQLSKSGVRLVRGIVKDVDSQ--KLILN-DGTEVPYGLLVWST--------G 332 (351)
Q Consensus 280 ----~~~~~------------~~~~~~~~~l~~~gV~~~~~~v~~v~~~--~v~~~-~g~~~~~D~vi~a~--------G 332 (351)
..+.. .+.......++..||+++.++.+=.... .+... ++.++.+|.+|+|+ |
T Consensus 71 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G 150 (223)
T d1ebda1 71 KAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELVG 150 (223)
T ss_dssp ECCSCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBSC
T ss_pred cchhheeeHHHHhhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCcccccc
Confidence 00110 1122233445677999998853322232 23332 34568899999985 7
Q ss_pred CCCc-cc--cccCCCCCCCCC
Q 018704 333 VGPS-TL--VKSLDLPKSPGG 350 (351)
Q Consensus 333 ~~p~-~~--~~~~gl~~~~~G 350 (351)
++|+ +. ++.+|+++|++|
T Consensus 151 ~~p~~~~l~l~~~gv~~~~~G 171 (223)
T d1ebda1 151 RRPNTDELGLEQIGIKMTNRG 171 (223)
T ss_dssp EEESCSSSSTTTTTCCBCTTS
T ss_pred ceecCCCCChHhcCceECCCC
Confidence 7787 42 578899998887
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.23 E-value=2.2e-07 Score=77.99 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=32.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCce-EEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~~ 96 (351)
++||||||||||||++||.++++.|.+ |+|+|....
T Consensus 2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~ 38 (240)
T d1feca1 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH 38 (240)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence 469999999999999999999998875 899997654
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=98.22 E-value=3.1e-07 Score=81.31 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=32.5
Q ss_pred CCcEEEECCchhHHHHHHhhh-----ccCceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGID-----TSLYDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~-----~~g~~v~vie~~~~~ 97 (351)
.+||+||||||+||++|..|+ +.|++|+|||+.+..
T Consensus 7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~ 47 (360)
T d1pn0a1 7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence 489999999999999999996 689999999988654
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.19 E-value=5.2e-06 Score=69.02 Aligned_cols=108 Identities=25% Similarity=0.344 Sum_probs=69.0
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~------------------------------- 280 (351)
+|+|||||+.|+.+|..+++++ ..+.+|.++++..+-.
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~-----------~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~ 71 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSH-----------PETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGF 71 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-----------TTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCC
Confidence 8999999999999998887765 2336788888643210
Q ss_pred -------CCcH------------HHHHHHHHHhhhcCcEEEcCeEEEEeC------C--eEEecCCc--EEeccEEEEec
Q 018704 281 -------SFDD------------RLRHYATTQLSKSGVRLVRGIVKDVDS------Q--KLILNDGT--EVPYGLLVWST 331 (351)
Q Consensus 281 -------~~~~------------~~~~~~~~~l~~~gV~~~~~~v~~v~~------~--~v~~~~g~--~~~~D~vi~a~ 331 (351)
.++. .....+...++..||+++.++-.-+.. . .+...+|+ ++++|.+|+||
T Consensus 72 ~i~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAt 151 (233)
T d1xdia1 72 HIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVAT 151 (233)
T ss_dssp C------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECC
T ss_pred cccccCceeeeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeec
Confidence 0110 111224445778899999885332222 1 34445664 58999999999
Q ss_pred CCCCcc------------ccccCCCCCCCCC
Q 018704 332 GVGPST------------LVKSLDLPKSPGG 350 (351)
Q Consensus 332 G~~p~~------------~~~~~gl~~~~~G 350 (351)
|..|.. .++..|++++++|
T Consensus 152 G~~p~~~~~~~~~~~~~l~l~~~gv~~~~~G 182 (233)
T d1xdia1 152 GASPRILPSGSVPNTSGLGLERVGIQLGRGN 182 (233)
T ss_dssp CEEECCCGGCEEECCSSSCTTTTTCCCBTTT
T ss_pred CcccccccccccccccccccchhhhcccCCC
Confidence 998851 1234456677666
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.17 E-value=4.2e-07 Score=79.44 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=33.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhc--cCceEEEEcCCCccc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMV 98 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~--~g~~v~vie~~~~~~ 98 (351)
..+||+||||||+||+||++|++ .|++|+|+|+++.+.
T Consensus 49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 88 (311)
T d2gjca1 49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG 88 (311)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence 35799999999999999999985 599999999987754
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=3.6e-06 Score=69.19 Aligned_cols=105 Identities=22% Similarity=0.353 Sum_probs=70.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~------------------------------- 280 (351)
.++|||||+.|+++|..++++| .+|.+++++.+..
T Consensus 5 DviIIG~GpaG~~aA~~aar~G--------------~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~ 70 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELG--------------ARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGF 70 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccc
Confidence 6999999999999999999988 8999998753210
Q ss_pred -----CCcH------------HHHHHHHHHhhhcCcEEEcCeEEEEeCCe-EEecCCcEEeccEEEEecCCCCc-c----
Q 018704 281 -----SFDD------------RLRHYATTQLSKSGVRLVRGIVKDVDSQK-LILNDGTEVPYGLLVWSTGVGPS-T---- 337 (351)
Q Consensus 281 -----~~~~------------~~~~~~~~~l~~~gV~~~~~~v~~v~~~~-v~~~~g~~~~~D~vi~a~G~~p~-~---- 337 (351)
.++. .+.....+.++..||+++.|.-....... ....+..++.+|.+++++|.+|. +
T Consensus 71 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~~r~ 150 (221)
T d3grsa1 71 PSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERV 150 (221)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCCTEE
T ss_pred cccccchhhhhhhhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCCccc
Confidence 0110 11122334567889999988522222222 22234457889999999996655 2
Q ss_pred ------ccccCCCCCCCCC
Q 018704 338 ------LVKSLDLPKSPGG 350 (351)
Q Consensus 338 ------~~~~~gl~~~~~G 350 (351)
.|++.|+++|++|
T Consensus 151 p~~~~l~L~~~gv~~~~~G 169 (221)
T d3grsa1 151 PNTKDLSLNKLGIQTDDKG 169 (221)
T ss_dssp ESCTTTTGGGTTCCBCTTS
T ss_pred cCCCCcCchhcCcEECCCc
Confidence 2567788888877
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=6.1e-07 Score=78.07 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=32.9
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+.+||||||+|+|||+||+.+++.| +|+|||+.+..
T Consensus 5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~ 41 (305)
T d1chua2 5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVT 41 (305)
T ss_dssp SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTT
T ss_pred cccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCC
Confidence 34689999999999999999999888 99999997653
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.11 E-value=1.4e-05 Score=67.26 Aligned_cols=92 Identities=21% Similarity=0.222 Sum_probs=65.1
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCC------CcHHHHHHHHH-----------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS------FDDRLRHYATT----------- 292 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~l~~------~~~~~~~~~~~----------- 292 (351)
+||+|||||++|+-+|..|++.| .+|++++++. .... +.+.....+.+
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~G--------------~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~ 70 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDAG--------------VDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVP 70 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBC
T ss_pred CcEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccC
Confidence 49999999999999999999877 9999999853 2211 22322222222
Q ss_pred ----------------------------------HhhhcCcEEEcCe-EEEEeC--C--eEEecCCcEEeccEEEEecCC
Q 018704 293 ----------------------------------QLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 293 ----------------------------------~l~~~gV~~~~~~-v~~v~~--~--~v~~~~g~~~~~D~vi~a~G~ 333 (351)
.-...++.++.+. ++++.. + .+.+.||+++++|.+|.|.|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~ 150 (265)
T d2voua1 71 SSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGG 150 (265)
T ss_dssp CCEEEEEETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCT
T ss_pred CCcceeEeccCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccc
Confidence 1113356677774 777754 2 467789999999999999997
Q ss_pred CCc
Q 018704 334 GPS 336 (351)
Q Consensus 334 ~p~ 336 (351)
...
T Consensus 151 ~s~ 153 (265)
T d2voua1 151 ASV 153 (265)
T ss_dssp TCH
T ss_pred ccc
Confidence 765
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=3.4e-07 Score=80.69 Aligned_cols=36 Identities=28% Similarity=0.203 Sum_probs=33.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+++||+|||+|+|||+||.++++.|.+|+|+|+.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~ 41 (330)
T d1neka2 6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFP 41 (330)
T ss_dssp EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCG
T ss_pred ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 458999999999999999999999999999999764
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.07 E-value=8e-06 Score=67.15 Aligned_cols=106 Identities=20% Similarity=0.285 Sum_probs=71.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---CCCcH------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFDD------------------------ 284 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---~~~~~------------------------ 284 (351)
.|+|||||+.|+.+|..+++.| .+|.++++.... ..+..
T Consensus 5 DviIIGgGpAGl~aA~~aar~G--------------~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~ 70 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLG--------------LKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAH 70 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHT--------------CCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhh
Confidence 7999999999999999999988 899999874211 00000
Q ss_pred -----------------------------HHHHHHHHHhhhcCcEEEcCeEEEEeCCe--EEecCC--cEEeccEEEEec
Q 018704 285 -----------------------------RLRHYATTQLSKSGVRLVRGIVKDVDSQK--LILNDG--TEVPYGLLVWST 331 (351)
Q Consensus 285 -----------------------------~~~~~~~~~l~~~gV~~~~~~v~~v~~~~--v~~~~g--~~~~~D~vi~a~ 331 (351)
.+...+...++..||+++.+......... +...++ ..+.++.+++|+
T Consensus 71 ~~~~~~gi~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 150 (229)
T d3lada1 71 ESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILAS 150 (229)
T ss_dssp TTSGGGTEECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECC
T ss_pred hhhhhcccccCcceeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccC
Confidence 01122333456778999888644443332 222222 457899999999
Q ss_pred CCCCc-c---------ccccCCCCCCCCCC
Q 018704 332 GVGPS-T---------LVKSLDLPKSPGGR 351 (351)
Q Consensus 332 G~~p~-~---------~~~~~gl~~~~~G~ 351 (351)
|.+|. . +++.+|+++|++|.
T Consensus 151 G~~~~~~~~~~~~~~~~~~~~gv~l~~~G~ 180 (229)
T d3lada1 151 GSKPVEIPRRPVTTDLLAADSGVTLDERGF 180 (229)
T ss_dssp CEEECCCTEEECCTTCCSSCCSCCBCTTSC
T ss_pred CcccccccccccccccchHhcCeeecCCCc
Confidence 98875 1 56677888888773
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.07 E-value=8.1e-06 Score=63.10 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=31.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCce-EEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~~ 96 (351)
...+|||||||.+|+-+|..+.+.|.+ |+++.+.+.
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~ 80 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF 80 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence 346899999999999999999999876 889987654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.06 E-value=2e-06 Score=69.28 Aligned_cols=90 Identities=17% Similarity=0.316 Sum_probs=60.2
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCCCCCC----------CcHHHHHHHHHHhhhcC
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEILSS----------FDDRLRHYATTQLSKSG 298 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~l~~----------~~~~~~~~~~~~l~~~g 298 (351)
+|||+|||||++|+++|..|.+.| . +|+++++.+.+.. ................+
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G--------------~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLG--------------YSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLG 69 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTT
T ss_pred CCEEEEECChHHHHHHHHHHHHCC--------------CCeEEEEEecCcccchhhhhccccccccccccchhhhhhccc
Confidence 469999999999999999999987 5 5999999754322 23344444445555666
Q ss_pred cEEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 299 VRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 299 V~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.++.... +. .....+.+..+..+|.+++++|....
T Consensus 70 ~~~~~~~~v~---~~~~~~~~~~~~~~~~~~ia~g~~~~ 105 (196)
T d1gtea4 70 VKIICGKSLS---ENEITLNTLKEEGYKAAFIGIGLPEV 105 (196)
T ss_dssp CEEEESCCBS---TTSBCHHHHHHTTCCEEEECCCCCEE
T ss_pred eeEEeeEEec---cceeeeehhhccccceeeEEeccccC
Confidence 7766653 31 22222333344568899999996544
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.02 E-value=3.6e-06 Score=71.23 Aligned_cols=91 Identities=22% Similarity=0.287 Sum_probs=56.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~------------------------------- 280 (351)
.++|||||+.|+.+|..+++.| .+|.++++..+-.
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G--------------~~V~liE~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~ 68 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHN--------------AKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGF 68 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTC
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCeEEeeCCcchHHHHhhhhcccchhccccccc
Confidence 6899999999999999999988 8999999854210
Q ss_pred ----CCc-H-----------HHHHHHHHHhhhcCcEEEcCe--EEEEeCCeE-----------EecCCcEEeccEEEEec
Q 018704 281 ----SFD-D-----------RLRHYATTQLSKSGVRLVRGI--VKDVDSQKL-----------ILNDGTEVPYGLLVWST 331 (351)
Q Consensus 281 ----~~~-~-----------~~~~~~~~~l~~~gV~~~~~~--v~~v~~~~v-----------~~~~g~~~~~D~vi~a~ 331 (351)
.++ + .+.+.+.+.+++.||+++.|+ ..+...-.+ ...+++++.+|.||+||
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIAT 148 (259)
T d1onfa1 69 DTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAV 148 (259)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECC
T ss_pred cchhhhhhhhHHhhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEec
Confidence 011 0 112223445678899999883 222111001 01134569999999999
Q ss_pred CCCCc
Q 018704 332 GVGPS 336 (351)
Q Consensus 332 G~~p~ 336 (351)
|.+|.
T Consensus 149 Gs~P~ 153 (259)
T d1onfa1 149 GNKPV 153 (259)
T ss_dssp CCCBC
T ss_pred CCCCc
Confidence 99993
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=1.1e-05 Score=62.88 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=25.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDV 88 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v 88 (351)
..++|+|||||..|+-+|..+++.|.++
T Consensus 28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~ 55 (162)
T d1ps9a2 28 VGNKVAIIGCGGIGFDTAMYLSQPGEST 55 (162)
T ss_dssp CCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred cCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence 3479999999999999999999998764
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=98.02 E-value=1.5e-06 Score=77.60 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=33.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
....||||||+|++|+.+|.+|++.|++|+|+|+...
T Consensus 5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 41 (370)
T d3coxa1 5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 41 (370)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4568999999999999999999999999999998643
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=9e-06 Score=66.57 Aligned_cols=90 Identities=26% Similarity=0.456 Sum_probs=61.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC------------------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~------------------------------ 281 (351)
.|+|||||+.|+.+|..++++| .+|.+++++.+-..
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G--------------~kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g 69 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYG--------------QKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYG 69 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGT
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcC
Confidence 7999999999999999999888 89999998642100
Q ss_pred -------Cc-H-----------HHHHHHHHHhhhcCcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 282 -------FD-D-----------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 282 -------~~-~-----------~~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
++ . .+...++..+++.||++..+.-.......+. .++..+.++.+++|||..|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~-~~~~~~~~~~~iiatG~~p~ 142 (217)
T d1gesa1 70 FDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLE-VNGETITADHILIATGGRPS 142 (217)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEE-ETTEEEEEEEEEECCCEEEC
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeec-CCCceeeeeeeeeecCcccc
Confidence 00 0 1112223345667888877753333333333 45778999999999998765
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.01 E-value=1.4e-05 Score=61.91 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=31.0
Q ss_pred CcEEEE--CCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVL--GSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvII--G~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
..|+|| |||+.|+.+|..|++.|.+|+|+++.+..
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~ 76 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA 76 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 466666 99999999999999999999999997753
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.00 E-value=1.6e-06 Score=76.77 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=31.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhc----cCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~----~g~~v~vie~~~~ 96 (351)
..+||||||||+|||+||+.|++ .|.+|+|||+.+.
T Consensus 20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~ 59 (356)
T d1jnra2 20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 59 (356)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCC
Confidence 35899999999999999999964 7999999998654
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.99 E-value=2.8e-05 Score=63.68 Aligned_cols=91 Identities=26% Similarity=0.406 Sum_probs=62.0
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC------------------------------
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------ 280 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~------------------------------ 280 (351)
..++|||||+.|+++|..++++| .+|++++++.+-.
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~G--------------~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~ 71 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQLG--------------IPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPS 71 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred cCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccc
Confidence 38999999999999999999998 8999998753210
Q ss_pred ---------CCcH------------HHHHHHHHHhhhcCcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 281 ---------SFDD------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 281 ---------~~~~------------~~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.... .........++..++.++.|+..-.....+. .++.++++|.+++|||.+|.
T Consensus 72 ~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~-~~~~~i~a~~viiAtG~~p~ 147 (220)
T d1lvla1 72 PLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVE-VDGQRIQCEHLLLATGSSSV 147 (220)
T ss_dssp TTCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEE-ETTEEEECSEEEECCCEEEC
T ss_pred cceEEeccceehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCccccc-ccceeEeeceeeEcCCCCcc
Confidence 0000 0111223345566788888753333333333 35678999999999998876
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.96 E-value=2.1e-06 Score=76.45 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=31.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.||||||+|++|+.+|.+|++.|++|+|+|+...
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 36 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL 36 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence 4899999999999999999999999999998654
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=6.6e-05 Score=55.74 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=64.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEE-EEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSH 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 139 (351)
..++|+|||+|.+++-.|..|++..-+|+|+-+.+.+...+ ...+.+....++.++ +.+
T Consensus 29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~~--------------------~~~~~~~~~~~I~v~~~~~ 88 (126)
T d1fl2a2 29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQ--------------------VLQDKLRSLKNVDIILNAQ 88 (126)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCH--------------------HHHHHHHTCTTEEEESSEE
T ss_pred CCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccccc--------------------ccccccccccceeEEcCcc
Confidence 35899999999999999999999988999998866532111 111223444567665 557
Q ss_pred eeeEeCCCCE---EEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 140 CAGIDTDNHV---VHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 140 v~~i~~~~~~---v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
++.+..+... +.+.+..+++ ..++.+|.|+++.|
T Consensus 89 v~~i~G~~~~v~~v~l~~~~tge------~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 89 TTEVKGDGSKVVGLEYRDRVSGD------IHNIELAGIFVQIG 125 (126)
T ss_dssp EEEEEESSSSEEEEEEEETTTCC------EEEEECSEEEECSC
T ss_pred eEEEEccccceeeEEEEECCCCC------EEEEECCEEEEEeC
Confidence 8888765432 3344333444 45899999999988
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.88 E-value=3.3e-06 Score=75.11 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=32.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.||+||||||+||+.+|.+|++.|.+|+|+|+...
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~ 36 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 36 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence 58999999999999999999999999999998753
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.88 E-value=1.9e-06 Score=71.78 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=56.3
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCC----------Cc--HHHHHHHHHHhh
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----------FD--DRLRHYATTQLS 295 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~----------~~--~~~~~~~~~~l~ 295 (351)
...++|+|||||++|+.+|..|++.| .+|+++++...+.. +. ..........+.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G--------------~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESG--------------YTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQIT 112 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHH
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhc--------------cceeeEeeccccCCccccccccceeecccccchhHHHHHH
Confidence 45679999999999999999999887 89999998642211 11 112222222232
Q ss_pred hcCcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.+...... ........+...+..++.+|.||+|||..+.
T Consensus 113 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~vviAtG~~~~ 152 (233)
T d1djqa3 113 KLLKKNKES-QLALGQKPMTADDVLQYGADKVIIATGASEC 152 (233)
T ss_dssp HHHTTCTTC-EEECSCCCCCHHHHHTSCCSEEEECCCEECC
T ss_pred HHhhcceee-eeecccccccchhhhhhccceeeeccCCCcc
Confidence 221111111 1111112233334456789999999998876
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.87 E-value=5.6e-06 Score=68.68 Aligned_cols=94 Identities=12% Similarity=0.141 Sum_probs=64.2
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------CC--CcHHHHHHHHHHhhhcCc
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SS--FDDRLRHYATTQLSKSGV 299 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l---------~~--~~~~~~~~~~~~l~~~gV 299 (351)
++|+|||+|++|+.+|..|.+.|.+ ....+.+|+++++.+.+ |. ....+.+.....+...|+
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~-------~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~ 75 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADT-------TEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRF 75 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHH-------STTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTE
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCc-------cccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCc
Confidence 4999999999999999999998731 22234689999997422 11 224556666677888899
Q ss_pred EEEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 300 RLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 300 ~~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+++.+. +. ..+.+. .-...+|.+++|||..+.
T Consensus 76 ~~~~~~~v~----~~~~~~-~~~~~~~~v~~atGa~~~ 108 (239)
T d1lqta2 76 RFFGNVVVG----EHVQPG-ELSERYDAVIYAVGAQSR 108 (239)
T ss_dssp EEEESCCBT----TTBCHH-HHHHHSSEEEECCCCCEE
T ss_pred eEEEEEEec----cccchh-hhhccccceeeecCCCcc
Confidence 999884 31 101111 112358999999998755
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.80 E-value=7.7e-06 Score=67.67 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=60.2
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--------C---CcHHHHHHHHHHhhhcCcE
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------S---FDDRLRHYATTQLSKSGVR 300 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~--------~---~~~~~~~~~~~~l~~~gV~ 300 (351)
+|+|||+|++|+.+|..|.+.+ .+.+|+++++.+.+. . ....+.......+.+.|++
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~------------~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHH------------SRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCA 70 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC------------SSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEE
T ss_pred eEEEECccHHHHHHHHHHHhcC------------CCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCee
Confidence 8999999999999999998753 237999999975321 1 2234455566677888999
Q ss_pred EEcCe-EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 301 LVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 301 ~~~~~-v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
++.+. |. . + +.+.+ -.-.+|.|++|+|..+.
T Consensus 71 ~~~~~~v~-~--~-~~~~~-l~~~~d~v~~a~Ga~~~ 102 (230)
T d1cjca2 71 FYGNVEVG-R--D-VTVQE-LQDAYHAVVLSYGAEDK 102 (230)
T ss_dssp EEBSCCBT-T--T-BCHHH-HHHHSSEEEECCCCCEE
T ss_pred EEeeEEeC-c--c-ccHHH-HHhhhceEEEEeecccc
Confidence 98885 41 0 0 11110 01258999999998765
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.73 E-value=1.4e-06 Score=72.63 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhcCcEEEcCeEEEEeCCeEEecCCcEEeccEEEEecCCCCcc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 337 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 337 (351)
......+.+.+++.|++++.++|++++ +.....+|.||.|+|.....
T Consensus 142 ~~~~~~L~~~~~~~G~~~~~~~v~~l~-------~~~~~~~d~vVnctG~~a~~ 188 (246)
T d1kifa1 142 RKYLQWLTERLTERGVKFFLRKVESFE-------EVARGGADVIINCTGVWAGV 188 (246)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCCHH-------HHHHTTCSEEEECCGGGHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEeEeCCHH-------HhccCCCCEEEECCcccccc
Confidence 456677788888999999877666543 11234589999999987653
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.72 E-value=1.1e-05 Score=72.41 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=32.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~ 96 (351)
+.+|+||||||+||+.+|.+|++.+ ++|+|+|+.+.
T Consensus 23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~ 59 (391)
T d1gpea1 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (391)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence 3599999999999999999999987 79999999864
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=0.00013 Score=54.10 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=61.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEE-EEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSH 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 139 (351)
..++|+|||+|-+++-.|..|++..-+|+++-+.+.+...+ ...+..........+.++ +.+
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~~-----------------~~~~~~~~~~~~~~i~~~~~~~ 88 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEK-----------------ILIKRLMDKVENGNIILHTNRT 88 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCH-----------------HHHHHHHHHHHTSSEEEECSCE
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccchh-----------------HHHHHHHHhhcccceeEecceE
Confidence 34899999999999999999999999999998876532111 111111112233445443 446
Q ss_pred eeeEeCCCCE---EEEEeecCccccCCCceeEeeccEEEEecC
Q 018704 140 CAGIDTDNHV---VHCETVTDELRTLEPWKFKISYDKLVIALG 179 (351)
Q Consensus 140 v~~i~~~~~~---v~~~~~~~~~~~~~~~~~~~~~d~lviAtG 179 (351)
+..+.-+... +.+.+...++ ...++.+|.|+++.|
T Consensus 89 v~~i~G~~~~v~~v~l~~~~~~e-----~~~~l~~dgvFv~iG 126 (126)
T d1trba2 89 LEEVTGDQMGVTGVRLRDTQNSD-----NIESLDVAGLFVAIG 126 (126)
T ss_dssp EEEEEECSSSEEEEEEECCTTCC-----CCEEEECSEEEECSC
T ss_pred EEEEECCCCceEEEEEEECCCCc-----eEEEEECCEEEEEeC
Confidence 7777766543 3333222221 123789999999987
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.70 E-value=0.00012 Score=59.96 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=29.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.|+|||||+.|+.+|..+++.| .+|.++++..
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G--------------~kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLG--------------FNTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEecC
Confidence 7999999999999999999988 8999999764
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=97.65 E-value=0.00014 Score=59.73 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=30.1
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 278 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 278 (351)
.|+|||||+.|+.+|..+++.+ .+|.++++.+.
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G--------------~~V~viE~~~~ 40 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEG--------------LKVAIVERYKT 40 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeccCC
Confidence 7999999999999999999987 89999998653
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.64 E-value=1.3e-05 Score=71.74 Aligned_cols=36 Identities=11% Similarity=0.233 Sum_probs=32.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~ 96 (351)
+.+|+||||||.||+.+|.+|++.+ ++|+|+|+.+.
T Consensus 16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~ 52 (385)
T d1cf3a1 16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY 52 (385)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 4589999999999999999999865 89999998864
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.63 E-value=0.00021 Score=58.69 Aligned_cols=91 Identities=20% Similarity=0.245 Sum_probs=63.2
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C-----------------------
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S----------------------- 280 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l--------~----------------------- 280 (351)
.|+|||||+.|+.+|..++++| .+|.+++..... .
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G--------------~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~ 70 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFD--------------KKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQA 70 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGC--------------CCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhH
Confidence 7999999999999999999988 899999864210 0
Q ss_pred ---------------CCcH------------HHHHHHHHHhhhcCcEEEcCeEEEEeCCeEE--ecCCc--EEeccEEEE
Q 018704 281 ---------------SFDD------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLI--LNDGT--EVPYGLLVW 329 (351)
Q Consensus 281 ---------------~~~~------------~~~~~~~~~l~~~gV~~~~~~v~~v~~~~v~--~~~g~--~~~~D~vi~ 329 (351)
..+. .+.+.+...+++.+|.++.++..-.....+. ..++. .+.+|.+++
T Consensus 71 ~~~~~~~gi~~~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi 150 (235)
T d1h6va1 71 LKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLI 150 (235)
T ss_dssp HHHTTTTTBCCCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEE
T ss_pred hhhhhccccccccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceeccccccccccccccccee
Confidence 0010 0122234456778999999864444444333 33443 478999999
Q ss_pred ecCCCCc
Q 018704 330 STGVGPS 336 (351)
Q Consensus 330 a~G~~p~ 336 (351)
++|.+|.
T Consensus 151 ~~G~~p~ 157 (235)
T d1h6va1 151 ATGERPR 157 (235)
T ss_dssp CCCEEEC
T ss_pred ecCCCce
Confidence 9999887
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.58 E-value=2.2e-05 Score=69.41 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=31.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|+||||||+||+.+|.+|++. ++|+|||+.+.
T Consensus 26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~ 59 (351)
T d1ju2a1 26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL 59 (351)
T ss_dssp EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence 48999999999999999999986 99999999864
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.53 E-value=0.0005 Score=50.99 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=62.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCccccchhhhhhhcccccccccccchhccchhhhcCCCeEEE-EEE
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSH 139 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 139 (351)
..++|+|||+|-+++-.|..|++.--+|+||-+.+.+...+ ...+.+...+++.++ +.+
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~~--------------------~~~~~l~~~~nI~v~~~~~ 92 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASK--------------------IMQQRALSNPKIDVIWNSS 92 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCH--------------------HHHHHHHTCTTEEEECSEE
T ss_pred CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccch--------------------hhhhccccCCceEEEeccE
Confidence 45899999999999999999999989999998876632111 111223444566654 457
Q ss_pred eeeEeCCCC-----EEEEEeecCccccCCCceeEeeccEEEEec
Q 018704 140 CAGIDTDNH-----VVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (351)
Q Consensus 140 v~~i~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~d~lviAt 178 (351)
+..+.-+.+ .+.+.+..+++ ..++.+|.|+||.
T Consensus 93 v~~i~Gd~~~~~v~~v~l~~~~tge------~~~l~~dGvFVaI 130 (130)
T d1vdca2 93 VVEAYGDGERDVLGGLKVKNVVTGD------VSDLKVSGLFFAI 130 (130)
T ss_dssp EEEEEESSSSSSEEEEEEEETTTCC------EEEEECSEEEECS
T ss_pred EEEEEccCCcccEEEEEEEECCCCC------EEEEECCEEEEEC
Confidence 777765532 34444444444 4589999999973
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=3.7e-05 Score=53.87 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=32.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..++|+|||.|-+|+++|..|.+.|.+|+++|.+..
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 347899999999999999999999999999998654
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=97.50 E-value=0.00012 Score=60.85 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=29.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
++|+|||||.+|+-.|..|++.| .+|++++++
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~G--------------~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARKG--------------YSVHILARD 38 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred CcEEEECccHHHHHHHHHHHHCC--------------CCEEEEeCC
Confidence 58999999999999999999877 899999985
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.39 E-value=0.00043 Score=49.52 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=29.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..++|+|||+|.+|+-.|..|++...+++++.+.+
T Consensus 31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 45899999999999999999999877777666543
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=97.38 E-value=0.00047 Score=59.08 Aligned_cols=32 Identities=34% Similarity=0.381 Sum_probs=28.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.|+|||+|.+|+-.|..+++.| .+|.++++..
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G--------------~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSG--------------AKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCC
Confidence 7999999999999999999877 8899998753
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.35 E-value=0.00071 Score=56.63 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=28.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 277 (351)
+|+|||||++|+-+|..|.+.| . +|+++++..
T Consensus 3 ~V~IvGaG~aGl~~A~~L~~~G--------------i~~V~V~Er~~ 35 (288)
T d3c96a1 3 DILIAGAGIGGLSCALALHQAG--------------IGKVTLLESSS 35 (288)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CSEEEEEESSS
T ss_pred EEEEECcCHHHHHHHHHHHhCC--------------CCeEEEEeCCC
Confidence 8999999999999999999876 5 889999964
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.29 E-value=9.9e-05 Score=57.99 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=32.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++|+|||+|..|..+|.+|.+.|++|+|+|++..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~ 36 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE 36 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence 37899999999999999999999999999998754
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.28 E-value=9.1e-05 Score=58.57 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=31.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++++|||+|..|++.|..|++.|++|+++|+++.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~ 35 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ 35 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 6899999999999999999999999999999654
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=97.26 E-value=0.00088 Score=57.75 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=27.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.|+|||+|.+|+-+|..|++.| .+|.++++.
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G--------------~~V~llEk~ 55 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAG--------------AKVILLEKE 55 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTT--------------CCEEEECSS
T ss_pred eEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCC
Confidence 7999999999999999999876 788888874
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.19 E-value=0.00076 Score=57.08 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=28.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
+|+|||||++|+-+|..|.+.| .+|+++++.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G--------------~~v~vlE~~ 34 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAG--------------IDNVILERQ 34 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCC
Confidence 7999999999999999999987 889999885
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.00099 Score=57.61 Aligned_cols=38 Identities=11% Similarity=-0.080 Sum_probs=31.1
Q ss_pred hcCcEEEcCe-EEEEeCC----eEEecCCcEEeccEEEEecCC
Q 018704 296 KSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (351)
Q Consensus 296 ~~gV~~~~~~-v~~v~~~----~v~~~~g~~~~~D~vi~a~G~ 333 (351)
+.|++++.+. |+++..+ .|++.||++++||.||+|++.
T Consensus 219 ~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~ 261 (383)
T d2v5za1 219 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPP 261 (383)
T ss_dssp HHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCG
T ss_pred HcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCH
Confidence 4588899995 8888753 577889999999999999863
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.03 E-value=0.00023 Score=53.13 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=31.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|+|+|+|..|...|..|.+.|++|+++|+++.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~ 34 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD 34 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence 4799999999999999999999999999999764
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.03 E-value=0.00035 Score=53.78 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=32.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+.+|+|||+|.+|+.|+..+.+.|.+|+++|.+..
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~ 66 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE 66 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH
Confidence 457999999999999999999999999999998643
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.98 E-value=0.00039 Score=54.30 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=32.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+-+|+|||+|.+|+.||..+.+.|.+|+++|.+..
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 46999999999999999999999999999997654
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=96.92 E-value=0.0028 Score=54.33 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=27.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.|+|||+|.+|+-.|..+++.| .+|.++++.
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G--------------~~V~vlEK~ 51 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAG--------------ANVILVDKA 51 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCC
Confidence 7999999999999999999876 778888764
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.00044 Score=53.48 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=31.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|+|||+|..|...|..|++.|++|+++++.+.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 4799999999999999999999999999998654
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.83 E-value=0.00032 Score=53.59 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=31.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
..++|+|||||..|+.-|..|.+.|.+|+||.++
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3589999999999999999999999999999764
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.80 E-value=0.00046 Score=58.48 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=30.6
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
+|||+|||||.+|+-+|..|++.| .+|+++++++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G--------------~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHG--------------LNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTS--------------CEEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--------------CCEEEEeCCC
Confidence 369999999999999999999876 8999999864
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=96.80 E-value=0.0073 Score=49.21 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=27.0
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.|+|||+|+.|+.+|..+++++. ..|.+++..
T Consensus 5 DvvVIG~GpAG~~aAi~aa~~g~-------------k~V~vie~~ 36 (240)
T d1feca1 5 DLVVIGAGSGGLEAGWNAASLHK-------------KRVAVIDLQ 36 (240)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHC-------------CCEEEEESC
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEEEe
Confidence 79999999999999999998871 358888764
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.74 E-value=0.00067 Score=54.02 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=33.2
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+-++|.|||+|..|...|..+++.|++|+++|+++.
T Consensus 3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 347999999999999999999999999999998764
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.73 E-value=0.00071 Score=48.83 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=32.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.++|+|||+|..|..-|..|.+.|.+|+++++...
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~ 46 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI 46 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 47999999999999999999999999999987553
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.72 E-value=0.00042 Score=51.63 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++++|||+|..|..+|..|.+.|++|+++|.++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~ 34 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE 34 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence 4699999999999999999999999999999764
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.67 E-value=0.00064 Score=58.42 Aligned_cols=36 Identities=36% Similarity=0.425 Sum_probs=31.9
Q ss_pred cccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.+.|+|+|||||.+|+-+|..|++.| .+|+++++++
T Consensus 28 ~~pkkV~IIGaG~aGLsaA~~L~~~G--------------~~V~vlE~~~ 63 (370)
T d2iida1 28 SNPKHVVIVGAGMAGLSAAYVLAGAG--------------HQVTVLEASE 63 (370)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHT--------------CEEEEECSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCC
Confidence 34469999999999999999999987 8999999864
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.58 E-value=0.0007 Score=54.38 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=31.4
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||.|..|+..|..|++.|++|+.+|.++.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~ 34 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSST 34 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence 4699999999999999999999999999998754
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=96.41 E-value=0.00091 Score=52.91 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=32.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
-.+|.|||+|..|...|..+++.|++|+++|+++.
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 36799999999999999999999999999999764
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.36 E-value=0.0041 Score=48.49 Aligned_cols=32 Identities=22% Similarity=0.149 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
|+++|||+|..|.-+|..|.+.| .+|++++|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G--------------~~V~~~~r~ 33 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKG--------------QSVLAWDID 33 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred CEEEEECccHHHHHHHHHHHHCC--------------CEEEEEECC
Confidence 58999999999999999999887 899999884
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=96.33 E-value=0.0075 Score=48.70 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=29.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
..++|+|||+|-+|+-+|..|++.+.+++++=+.
T Consensus 31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~ 64 (235)
T d1w4xa2 31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 64 (235)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred CCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence 4589999999999999999999988887666433
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.33 E-value=0.0028 Score=45.50 Aligned_cols=74 Identities=19% Similarity=0.125 Sum_probs=49.3
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEE
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 308 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~ 308 (351)
++|+|+|||||.+|..-|..|...| .+|+++.... .++ +...+++.+++++.....
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~g--------------a~v~v~~~~~-----~~~----~~~~~~~~~i~~~~~~~~- 66 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAG--------------ARLTVNALTF-----IPQ----FTVWANEGMLTLVEGPFD- 66 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTT--------------BEEEEEESSC-----CHH----HHHHHTTTSCEEEESSCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccC-----ChH----HHHHHhcCCceeeccCCC-
Confidence 4579999999999999999999887 8999986531 223 334445566766554211
Q ss_pred EeCCeEEecCCcEEeccEEEEecCCCC
Q 018704 309 VDSQKLILNDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 309 v~~~~v~~~~g~~~~~D~vi~a~G~~p 335 (351)
++.-..++.|+.|++-..
T Consensus 67 ---------~~dl~~~~lv~~at~d~~ 84 (113)
T d1pjqa1 67 ---------ETLLDSCWLAIAATDDDT 84 (113)
T ss_dssp ---------GGGGTTCSEEEECCSCHH
T ss_pred ---------HHHhCCCcEEeecCCCHH
Confidence 111123778888877543
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.24 E-value=0.0019 Score=55.48 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=31.8
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS 280 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~ 280 (351)
|+|+|||||.+|+-+|..|++.| .+|+++++++.+.
T Consensus 3 KKI~IIGaG~sGL~aA~~L~k~G--------------~~V~viEk~~~iG 38 (314)
T d2bi7a1 3 KKILIVGAGFSGAVIGRQLAEKG--------------HQVHIIDQRDHIG 38 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSSSSS
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--------------CCEEEEECCCCCc
Confidence 69999999999999999999876 8999999976443
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.23 E-value=0.0027 Score=48.37 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=31.7
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
.++++|+|||+|..|.++|..|...++ +++++|.++.
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~ 42 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG 42 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence 456899999999999999999888775 7999997664
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0021 Score=55.11 Aligned_cols=34 Identities=29% Similarity=0.561 Sum_probs=30.7
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
..||+|||||.+|+-+|..|.+.| .+|+++++++
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G--------------~~V~VlEa~~ 38 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFG--------------MDVTLLEARD 38 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTT--------------CEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCC
Confidence 348999999999999999999877 8999999864
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.05 E-value=0.0023 Score=48.30 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=30.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccC--ceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g--~~v~vie~~~~ 96 (351)
+++|+|||+|..|.++|+.|...| .+++++|.++.
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~ 41 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKD 41 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccc
Confidence 469999999999999999999877 47999998654
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0038 Score=45.39 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=33.0
Q ss_pred CCCCcEEEECCch-----------hHHHHHHhhhccCceEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGW-----------AGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~-----------aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+..++|+|||+|| ++..|++.|++.|++++++..++.
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~ 52 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA 52 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence 4558999999986 789999999999999999998776
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.00 E-value=0.0047 Score=46.75 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=32.5
Q ss_pred CCCcEEEEC-CchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLG-SGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG-~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..++|.||| .|.-|.+.|..|.+.|++|+++|+...
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~ 44 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW 44 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence 447999999 699999999999999999999998654
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.95 E-value=0.0025 Score=52.38 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=28.5
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 277 (351)
+|+|||||.+|+-+|..|++.| . +|+++++++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G--------------~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAG--------------ITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTT--------------CCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCC--------------CCcEEEEECCC
Confidence 7999999999999999999876 5 599999864
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.91 E-value=0.003 Score=48.57 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=31.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||.|..|.+.|..|.+.|++|+++|+++.
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~ 34 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQS 34 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCch
Confidence 4699999999999999999999999999998653
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=95.90 E-value=0.013 Score=48.88 Aligned_cols=33 Identities=33% Similarity=0.480 Sum_probs=28.9
Q ss_pred CeEEEECCChHHHHHHHHHHH-HHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~-~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
..|+|||+|++|+.+|..|++ .| .+|+++++.+
T Consensus 34 ~DViVIGaGpaGL~aA~~LA~~~G--------------~~V~vlE~~~ 67 (278)
T d1rp0a1 34 TDVVVVGAGSAGLSAAYEISKNPN--------------VQVAIIEQSV 67 (278)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTT--------------SCEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHHccC--------------CeEEEEecCC
Confidence 379999999999999999975 46 9999999863
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.87 E-value=0.0023 Score=50.57 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=31.5
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|+|||+|.-|.+.|..|++.|.+|+++.+++.
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~ 41 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE 41 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence 5799999999999999999999999999998654
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.85 E-value=0.0034 Score=49.81 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=29.5
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||.|..||..|..++ .|++|+.+|.++.
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~ 33 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS 33 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence 47999999999999999887 5999999998765
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.82 E-value=0.0042 Score=46.92 Aligned_cols=37 Identities=24% Similarity=0.466 Sum_probs=31.6
Q ss_pred CCCCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCc
Q 018704 60 NEKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~ 96 (351)
+...+|.|||+|..|.++|+.|...++ +++|+|..+.
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~ 42 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES 42 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence 345799999999999999999988665 7999998654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.008 Score=42.81 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=32.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|.|||||.-|...|..+.+.|+++.++|+++.
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 36899999999999999999999999999998765
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.73 E-value=0.0029 Score=53.04 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=29.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
+|+|||||.+|+-+|..|++.| .+|+++++++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G--------------~~V~vlE~~~ 33 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRG--------------TDAVLLESSA 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTT--------------CCEEEECSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCC
Confidence 7999999999999999999877 8999999864
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0072 Score=43.31 Aligned_cols=36 Identities=17% Similarity=0.413 Sum_probs=32.1
Q ss_pred CCCcEEEECCc-----------hhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSG-----------WAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G-----------~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..++|+|||+| +++..|++.|++.|++++++..++.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe 49 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE 49 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence 35789999998 5889999999999999999998775
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0066 Score=40.08 Aligned_cols=35 Identities=26% Similarity=0.157 Sum_probs=32.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
+.|.|||||.=|-..+....+.|+++.++|+++.-
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~ 36 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP 36 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence 57999999999999999999999999999987653
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.58 E-value=0.0045 Score=50.25 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=30.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 278 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 278 (351)
.|+|||+|.+|+-+|..|++.| .+|+++++++.
T Consensus 7 DviViGaG~~Gl~~A~~La~~G--------------~~V~vlE~~~~ 39 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDG--------------KKVLHIDKQDH 39 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEcCCCC
Confidence 6999999999999999999887 89999999753
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=95.41 E-value=0.051 Score=40.25 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=44.5
Q ss_pred cEEEEEeCCCCCCC---CcHHHHHHHHHHhhhcCcEEEcC---eEEEEeC--CeEEecCCcEEeccEEEEec
Q 018704 268 IHVTLIEANEILSS---FDDRLRHYATTQLSKSGVRLVRG---IVKDVDS--QKLILNDGTEVPYGLLVWST 331 (351)
Q Consensus 268 ~~v~~~~~~~~l~~---~~~~~~~~~~~~l~~~gV~~~~~---~v~~v~~--~~v~~~~g~~~~~D~vi~a~ 331 (351)
.++.++...+.... +.+...+.+.+.+++.||+++.+ .+.+++. ..+++.+|+++++|++++..
T Consensus 69 ~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vvP 140 (141)
T d1fcda2 69 SKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLIP 140 (141)
T ss_dssp CCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEECC
T ss_pred CcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeCC
Confidence 45666655432222 22445566667778899999987 3777764 57888999999999998753
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.40 E-value=0.005 Score=46.54 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=29.8
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 275 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~ 275 (351)
.+|+|+|||||..|.+-+..|.+.| .+|+++.+
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~G--------------A~VtVvap 44 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTG--------------CKLTLVSP 44 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGT--------------CEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeC
Confidence 4579999999999999999999887 89999965
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.25 E-value=0.0069 Score=47.38 Aligned_cols=34 Identities=32% Similarity=0.335 Sum_probs=30.4
Q ss_pred CcEEEE-CCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVL-GSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvII-G~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|+|| |+|.-|.+.|..|++.|++|+|.++++.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e 35 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 469999 6799999999999999999999998753
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.0066 Score=51.50 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=30.5
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL 279 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l 279 (351)
.++|||||.+|+-+|..|++.| .+|++++++..+
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g--------------~~V~iiEk~~~i 36 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLN--------------KKVLVIEKRNHI 36 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGT--------------CCEEEECSSSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCC--------------CcEEEEECCCCc
Confidence 7999999999999999999877 899999997544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.24 E-value=0.0082 Score=46.19 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=31.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...|+|+|+|+.|+.++..++..|.+|+++|+++.
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~ 61 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR 61 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence 35899999999999999999889999999998654
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.23 E-value=0.007 Score=47.27 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=29.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
++|.|||+|.-|.+.|..|++.|.+|+++.+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r 31 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence 4799999999999999999999999999976
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=95.20 E-value=0.0069 Score=45.51 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=29.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~ 96 (351)
++|.|||+|..|.++|+.|...|. +++++|.++.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~ 37 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEA 37 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence 689999999999999999988664 7999997654
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.17 E-value=0.015 Score=44.25 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=30.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~ 96 (351)
..+|.|||+|..|-++|+.|...++ +++|+|.++.
T Consensus 19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~ 55 (159)
T d2ldxa1 19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTD 55 (159)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCch
Confidence 3589999999999999999998776 7999998653
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.032 Score=47.37 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=27.2
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.|+|||+|..|+-.|..+.+.+ .+.+|.+++..
T Consensus 7 DVlVIG~G~AGl~AA~~a~~~~------------~g~~V~lleK~ 39 (311)
T d1kf6a2 7 DLAIVGAGGAGLRAAIAAAQAN------------PNAKIALISKV 39 (311)
T ss_dssp SEEEECCSHHHHHHHHHHHHHC------------TTCCEEEEESS
T ss_pred CEEEECccHHHHHHHHHHHHhC------------CCCEEEEEECC
Confidence 7999999999999999988753 23678888764
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.0099 Score=44.90 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=31.3
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
-+++|+|.|..|..+|..|.+.|.+|+++|.++.
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~ 37 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPE 37 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence 4799999999999999999999999999998663
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=95.12 E-value=0.015 Score=44.26 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=31.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~ 96 (351)
+.+|.|||+|..|-++|+.|...|+ +++|+|.++.
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~ 56 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLED 56 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 4799999999999999999999877 7999998654
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=95.09 E-value=0.01 Score=44.35 Aligned_cols=34 Identities=15% Similarity=0.359 Sum_probs=29.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
.+|.|||+|..|.++|+.|...++ +++++|..+.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~ 36 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG 36 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence 589999999999999999988665 8999997664
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=0.011 Score=45.56 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=30.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
...|+|+|+|+.|+.++..+...|. +|+++|+++.
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~ 62 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT 62 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence 3579999999999999999999998 6999998654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.07 E-value=0.01 Score=45.61 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=31.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...|+|+|+|+.|+.++..++..|.+|+++|.++.
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~ 62 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR 62 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred CCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence 46899999999999999888889999999998654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.02 E-value=0.012 Score=45.12 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=31.1
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..+|+|+|+|+.|+.++..++..|.+|+++|+++.
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~ 62 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA 62 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence 46899999999999999988889999999998653
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=94.88 E-value=0.012 Score=43.96 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=29.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~ 96 (351)
.+|+|||+|..|-++|+.|...++ +++|+|.++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~ 37 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKE 37 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 579999999999999999988766 7999997654
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=94.88 E-value=0.014 Score=43.50 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=28.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~ 96 (351)
.+|.|||+|..|.++|+.|...++ +++|+|..+.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~ 37 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE 37 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence 589999999999999999988765 7999997664
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.025 Score=44.42 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=29.8
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
++|+|||+|..|..+|..++..| .+|++++++
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G--------------~~V~l~D~~ 36 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATG--------------HTVVLVDQT 36 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred EEEEEECcCHHHHHHHHHHHhCC--------------CcEEEEECC
Confidence 59999999999999999999877 999999986
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.82 E-value=0.098 Score=41.63 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=29.2
Q ss_pred CCcEEEECCchhHHHHHHhhh--------------------ccCce-EEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGID--------------------TSLYD-VVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~--------------------~~g~~-v~vie~~~~ 96 (351)
.++|+|||+|-.+|=||..|. +.|.+ |+++-++..
T Consensus 39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~ 94 (216)
T d1lqta1 39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 94 (216)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence 479999999999999998876 56664 999987754
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.78 E-value=0.01 Score=49.15 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=29.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.|+|||||.+|+-+|.+|++.| .+|+++++++
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G--------------~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKEN--------------KNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCC
Confidence 6999999999999999999887 8999999965
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.71 E-value=0.013 Score=42.74 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=29.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhc-cCce-EEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYD-VVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~-~g~~-v~vie~~~~ 96 (351)
++++|+|+|||-+|-+.+.++.+ .+++ +.+||.++.
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~ 39 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE 39 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence 35689999999999999988865 6788 677887665
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.018 Score=44.26 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=31.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..++|+|+|+|=++-++++.|.+.|.+++|+.|..
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 34789999999999999999999999999998854
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.52 E-value=0.0077 Score=47.29 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=30.5
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
..++|+|||+|.+|..+|..++..| .+|++++++
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G--------------~~V~l~D~~ 36 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKG--------------TPILMKDIN 36 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence 3469999999999999999998877 899999986
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=94.47 E-value=0.02 Score=42.68 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=29.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~ 96 (351)
++|.|||+|..|.++|..|...+. +++|+|.++.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~ 36 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG 36 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence 479999999999999999988764 7999997665
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=94.41 E-value=0.015 Score=44.30 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=31.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|-|||-|..|...|..|.+.|++|+++|+++.
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~ 34 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE 34 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 3699999999999999999999999999998654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.017 Score=39.59 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=51.6
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEEE
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 308 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~~ 308 (351)
++|+|+|+|.|-+|+-+|..|.+.+ .+|++.+.+...+.. +.+ +.++.++.+..
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g--------------~~v~~~D~~~~~~~~---------~~~-~~~~~~~~~~~-- 57 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARG--------------VTPRVMDTRMTPPGL---------DKL-PEAVERHTGSL-- 57 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEESSSSCTTG---------GGS-CTTSCEEESBC--
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCC--------------CEEEEeeCCcCchhH---------HHH-hhccceeeccc--
Confidence 4579999999999999999999887 899999885322111 111 12444433311
Q ss_pred EeCCeEEecCCcEEeccEEEEecCCCCc-cccc
Q 018704 309 VDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVK 340 (351)
Q Consensus 309 v~~~~v~~~~g~~~~~D~vi~a~G~~p~-~~~~ 340 (351)
.+...-.+|.||+++|..++ +++.
T Consensus 58 --------~~~~~~~~d~vi~SPGi~~~~~~~~ 82 (93)
T d2jfga1 58 --------NDEWLMAADLIVASPGIALAHPSLS 82 (93)
T ss_dssp --------CHHHHHHCSEEEECTTSCTTSHHHH
T ss_pred --------chhhhccCCEEEECCCCCCCCHHHH
Confidence 01111358999999999888 5443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.38 E-value=0.019 Score=44.63 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=30.9
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
..+|+|+|+|+.|+.++..+...|. +|+++|+++.
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~ 64 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN 64 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred CCEEEEECCCccchhheecccccccccccccccccc
Confidence 3689999999999999999999998 6999998664
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.026 Score=43.21 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=31.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
....|+|+|+|+.|+.++..++..|.++++++..+.
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~ 65 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA 65 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence 346899999999999999888889999989987554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.34 E-value=0.06 Score=39.19 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=36.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG 304 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~ 304 (351)
+|+|+|+|..|..+|..|...+ .+|++++.+ ++..+.+. .+.++.++.|
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g--------------~~v~vid~d-------~~~~~~~~---~~~~~~vi~G 50 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKG--------------HDIVLIDID-------KDICKKAS---AEIDALVING 50 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC-------HHHHHHHH---HHCSSEEEES
T ss_pred EEEEECCCHHHHHHHHHHHHCC--------------CCcceecCC-------hhhhhhhh---hhhhhhhccC
Confidence 7999999999999999998876 899999885 33333322 2347777665
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.28 E-value=0.017 Score=44.34 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=29.3
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
|+|+|||+|.+|.-+|..|.+.+ .+|++++|+
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g--------------~~V~v~dr~ 34 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSG--------------IKVTVACRT 34 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTT--------------CEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEECC
Confidence 69999999999999999998766 899999996
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.27 E-value=0.02 Score=42.81 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=29.3
Q ss_pred CcEEEECC-chhHHHHHHhhhccCc--eEEEEcCCCc
Q 018704 63 PRVVVLGS-GWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~-G~aGl~aA~~L~~~g~--~v~vie~~~~ 96 (351)
++|.|||+ |..|.++|..|...++ +++|+|.++.
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~ 37 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence 47999996 9999999999999885 7999998643
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.022 Score=43.25 Aligned_cols=34 Identities=18% Similarity=0.045 Sum_probs=32.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+.|+|||-|..|-.+|..|+..|.+|+++|.++
T Consensus 24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 4789999999999999999999999999999965
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=94.03 E-value=0.024 Score=43.03 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=28.9
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
..++++|||+|.+|..++..|...+. .++++.-|.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~-------------~~i~v~nRt 57 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGV-------------RAVLVANRT 57 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCC-------------SEEEEECSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCC-------------cEEEEEcCc
Confidence 44699999999999999999988762 468888774
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.99 E-value=0.026 Score=43.54 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=30.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
...|+|+|+|+.|+.++..++..|. +|+++|+++.
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~ 63 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI 63 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccccccccchhh
Confidence 4679999999999999999999997 6999998653
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.92 E-value=0.021 Score=42.49 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=29.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~ 96 (351)
++|.|||+|..|-++|+.|...+. +++|+|.++.
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~ 36 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED 36 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccc
Confidence 479999999999999999987664 6999997654
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=93.87 E-value=0.022 Score=47.93 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=28.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
+|+|||||.+|+-+|..|++.|. .+|++++++.
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~-------------~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGW-------------NNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-------------CCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-------------CcEEEEeCCC
Confidence 79999999999999999998651 3699999864
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.84 E-value=0.027 Score=42.83 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=31.4
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|-+||-|..|...|.+|.+.|++|.++|+...
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~ 35 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS 35 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence 4799999999999999999999999999998654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.84 E-value=0.04 Score=42.43 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=30.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCce-EEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~~ 96 (351)
...|+|+|+|+.|+.++..++..|.. |++.|.++.
T Consensus 29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~ 64 (174)
T d1e3ia2 29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE 64 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence 46899999999999999999999984 778887654
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=93.77 E-value=0.027 Score=43.50 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=31.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|-|||-|..|...|.+|.+.|++|+++|+.+.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~ 36 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS 36 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 5799999999999999999999999999998664
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.033 Score=44.01 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCcEEEECC-chhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+++|+|+|| |..|-+++.+|.+.|++|+++.+++.
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~ 38 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS 38 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence 478999995 99999999999999999999988543
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.69 E-value=0.028 Score=42.25 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=30.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|.|||.|-.|...|..|.+.|++|+++++.+.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~ 34 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS 34 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence 4699999999999999999999999999987554
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.63 E-value=0.035 Score=41.64 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=29.2
Q ss_pred CcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
.+|.|||+|..|-++|..|.+.++ +++|+|.++.
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~ 38 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN 38 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence 589999999999999998877665 6999997664
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=93.59 E-value=0.033 Score=42.61 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=30.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~ 95 (351)
+++|+|||+|=++-++++.|.+.|. +++|+.|+.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence 4789999999999999999999997 699998854
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.43 E-value=0.031 Score=42.50 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=30.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
...|+|+|+|+.|+.++..+...|.+|++++.++.
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~ 62 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE 62 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH
Confidence 46899999999999999999999999999997553
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.41 E-value=0.036 Score=41.28 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=28.0
Q ss_pred cEEEECC-chhHHHHHHhhhccCc--eEEEEcCCC
Q 018704 64 RVVVLGS-GWAGCRLMKGIDTSLY--DVVCVSPRN 95 (351)
Q Consensus 64 ~VvIIG~-G~aGl~aA~~L~~~g~--~v~vie~~~ 95 (351)
+|+|||| |..|.++|+.|...++ +++++|.++
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~ 36 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH 36 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence 7999996 9999999999998776 599999754
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.40 E-value=0.031 Score=41.42 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=28.7
Q ss_pred CcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~ 96 (351)
.+|.|||+|..|.++|..|...+. +++|+|.++.
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~ 36 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKK 36 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccc
Confidence 479999999999999999987654 7999997653
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=93.40 E-value=0.027 Score=46.66 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=29.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.|+|||||.+|+-+|..|++.| .+|+++++..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G--------------~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQG--------------VKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCC
Confidence 6999999999999999999877 8999999853
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=93.37 E-value=0.031 Score=42.24 Aligned_cols=35 Identities=17% Similarity=0.002 Sum_probs=32.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+.++|+|=|+.|-.+|..|+..|.+|+|.|.++.
T Consensus 23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi 57 (163)
T d1v8ba1 23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI 57 (163)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred CCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence 47999999999999999999999999999999764
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.33 E-value=0.042 Score=41.96 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=29.5
Q ss_pred CcEEEECCchhHHHHHHhhhccCc--eEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~--~v~vie~~~~ 96 (351)
++|.|||.|.-|-+.|+.|.+.|+ +|+.+|++..
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~ 37 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE 37 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence 469999999999999999999886 6888898653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.22 E-value=0.039 Score=43.35 Aligned_cols=35 Identities=17% Similarity=0.018 Sum_probs=29.5
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
...|+|+|+|+.|+.++..++..|. +|+++|..+.
T Consensus 26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~ 61 (195)
T d1kola2 26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA 61 (195)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhhcccceeeecccch
Confidence 4689999999999999999887777 6888888653
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=93.12 E-value=0.041 Score=45.63 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=32.9
Q ss_pred CCCcEEEECC-chhHHHHHHhhhccCceEEEEcCCCcc
Q 018704 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (351)
Q Consensus 61 ~~~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~~~ 97 (351)
.+++|+|+|| |..|-..+..|.+.|++|+++++.+..
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 3578999997 999999999999999999999987543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=92.99 E-value=0.036 Score=42.77 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=31.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|-|||-|..|...|.+|.+.|++|+++|+...
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~ 35 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS 35 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 4799999999999999999999999999998643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.94 E-value=0.068 Score=41.13 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=30.8
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
...|+|+|+|+.|+.++..++..|. +|+++|.++.
T Consensus 30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~ 65 (176)
T d1d1ta2 30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD 65 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence 3569999999999999999999995 6999998654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=92.93 E-value=0.043 Score=45.82 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=31.2
Q ss_pred CCcEEEECC-chhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+.+|+|+|| |..|...+..|.+.|++|+++.+...
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 38 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV 38 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 467999996 99999999999999999999987643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.80 E-value=0.065 Score=38.97 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=29.0
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
|+++|+|.|..|..+|..|...| .+|++++.+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g--------------~~vvvid~d 32 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMG--------------HEVLAVDIN 32 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CeEEEecCc
Confidence 48999999999999999999877 889999875
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=92.68 E-value=0.053 Score=40.94 Aligned_cols=31 Identities=19% Similarity=0.055 Sum_probs=28.7
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
||+|||+|.+|.-+|..|.+.| .+|+++.|+
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G--------------~~V~~~~r~ 32 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQG--------------HEVQGWLRV 32 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred EEEEECcCHHHHHHHHHHHHCC--------------CceEEEEcC
Confidence 7999999999999999999877 899999886
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=92.56 E-value=0.042 Score=44.87 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=30.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~ 95 (351)
+.+|+|||+|-.|-.+|..|++.|. +++|+|.+.
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 3689999999999999999999998 599999653
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.42 E-value=0.077 Score=40.70 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=30.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
....|+|+|+|+.|+.++..++..|. +|+++|.++.
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~ 63 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD 63 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence 34679999999999999999999986 6888887654
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=92.35 E-value=0.063 Score=41.55 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=31.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
..++|+|||+|-+|-++++.|.+.|. +++|+.+...
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~ 53 (182)
T d1vi2a1 17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 53 (182)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence 34799999999999999999999888 5899988653
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.28 E-value=0.058 Score=45.57 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=29.8
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.+.|+|||||++|+.+|..|++.. .+.+|+++++..
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~------------~~~~~~~~~~~~ 85 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNR------------PDLKVCIIESSV 85 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHC------------TTSCEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEEcCC
Confidence 358999999999999999998641 238999999974
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=92.21 E-value=0.043 Score=46.82 Aligned_cols=37 Identities=27% Similarity=0.592 Sum_probs=29.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.|+|||||++|+-+|..|++.... +.+.+|+++++.+
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~---------~~G~~v~vlEr~~ 45 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQ---------KPDLKVRIIDKRS 45 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHH---------STTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccc---------cCCCcEEEEcCCC
Confidence 799999999999999999753210 2348999999964
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=92.13 E-value=0.071 Score=40.32 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=30.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~ 95 (351)
...+|+|||+|-.|-.+|..|...|. +++|+-|..
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~ 58 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY 58 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence 34789999999999999999999998 599998753
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.99 E-value=0.067 Score=47.99 Aligned_cols=53 Identities=9% Similarity=-0.045 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhcCcEEEcCe-EEEEe---C-C---eEEecCCcEEeccEEEEecCCCCc
Q 018704 284 DRLRHYATTQLSKSGVRLVRGI-VKDVD---S-Q---KLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 284 ~~~~~~~~~~l~~~gV~~~~~~-v~~v~---~-~---~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
.++.+.+-+...-.|-.++.++ |+++. + + ++++.+|+++.++.||....+.|.
T Consensus 376 gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~ 436 (491)
T d1vg0a1 376 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE 436 (491)
T ss_dssp THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred chHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCc
Confidence 3778888888888899999996 88773 2 2 566788999999999999887776
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=91.89 E-value=0.12 Score=39.22 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=30.3
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
..+|+|+|+|..|.+.+....++| .+|++++.+
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lG--------------A~V~~~D~~ 64 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLG--------------AQVQIFDIN 64 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred CcEEEEECCChHHHHHHHHHhhCC--------------CEEEEEeCc
Confidence 359999999999999999999998 899999885
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=91.87 E-value=0.079 Score=41.27 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=31.9
Q ss_pred CCCcEEEEC-CchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLG-SGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG-~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..++|+|.| +|-.|..+|..|++.|.+|++++++..
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~ 58 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD 58 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence 357899999 699999999999999999999998753
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.74 E-value=0.095 Score=40.26 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=30.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..++|+|||+|-++-++++.|.+.| +++|+.|..
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~ 50 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV 50 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence 3478999999999999999998887 999998854
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.60 E-value=0.074 Score=38.50 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=26.8
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|+|+|.|..|..++..|. +.+++++|.++.
T Consensus 1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~ 32 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELR--GSEVFVLAEDEN 32 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence 47999999999999999996 456788887654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.36 E-value=0.086 Score=40.34 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=28.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceE-EEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDV-VCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v-~vie~~~ 95 (351)
..+|+|+|+|+.|+.++..++..|.++ ++.|.++
T Consensus 29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~ 63 (174)
T d1f8fa2 29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE 63 (174)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred CCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence 468999999999999999998888864 5566644
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=91.04 E-value=0.32 Score=36.00 Aligned_cols=53 Identities=17% Similarity=0.076 Sum_probs=39.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI 305 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~ 305 (351)
+++|+|.|..|..++..|...+ .+|++++.++ +-.....+.+...|+.++.|.
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~--------------~~v~vId~d~-------~~~~~~~~~~~~~~~~vi~Gd 57 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRG--------------QNVTVISNLP-------EDDIKQLEQRLGDNADVIPGD 57 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECCC-------HHHHHHHHHHHCTTCEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHHcC--------------CCEEEEeccc-------hhHHHHHHHhhcCCcEEEEcc
Confidence 8999999999999999998766 8899988742 223333344556688888763
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.96 E-value=0.16 Score=38.68 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=29.4
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
...|+|+|+|+.|+.++..++..+. +|+.+|+.+.
T Consensus 29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~ 64 (175)
T d1cdoa2 29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD 64 (175)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence 4569999999999999999988776 5888887654
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.95 E-value=0.076 Score=46.32 Aligned_cols=38 Identities=26% Similarity=0.517 Sum_probs=30.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.|+|||||++|+-+|..|+++.. ....+.+|.++++..
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~--------~~~~Gl~VlllEK~~ 71 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAA--------QHEKDLRVCLVEKAA 71 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHH--------HTTCCCCEEEECSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhh--------hhcCCCEEEEEcCCC
Confidence 79999999999999999987531 012458999999964
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.92 E-value=0.091 Score=43.10 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=30.5
Q ss_pred CcEEEECC-chhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
++|+|.|| |..|-..+..|.+.|++|+.+++++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 57999997 9999999999999999999999864
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.85 E-value=0.24 Score=38.11 Aligned_cols=35 Identities=29% Similarity=0.216 Sum_probs=32.1
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..++|.|||.|..|-..|..|...|.+|+.+|+..
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCceEEEeccccccccceeeeeccccccccccccc
Confidence 45789999999999999999999999999999854
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=90.76 E-value=0.4 Score=35.42 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=25.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
++.+||+|+.|.-++..|.+.+ ..++.+..|+
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~-------------~~~i~v~~r~ 33 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQG-------------GYRIYIANRG 33 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-------------SCEEEEECSS
T ss_pred EEEEEcCcHHHHHHHHHHHHCC-------------CCcEEEEeCC
Confidence 7899999999999998887643 2678888774
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.75 E-value=0.14 Score=38.27 Aligned_cols=33 Identities=12% Similarity=0.330 Sum_probs=30.1
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
++|.|||+|--|-+.|..|.+.++++++.++..
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~ 33 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL 33 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence 469999999999999999999999999998854
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=90.74 E-value=0.13 Score=40.37 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
..++|+|-|.|-.|..+|..|.+.|.+|++.|.+..
T Consensus 26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~ 61 (201)
T d1c1da1 26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTE 61 (201)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHH
Confidence 347899999999999999999999999999997643
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=90.71 E-value=0.087 Score=45.34 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=28.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.|+|||+|..|+-+|..|++.| .+|.+++++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG--------------~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAG--------------VQTLMLEMG 34 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESS
T ss_pred eEEEeCcCHHHHHHHHHHHHCc--------------CeEEEEecC
Confidence 6999999999999999999876 899999995
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=90.70 E-value=0.11 Score=38.32 Aligned_cols=30 Identities=30% Similarity=0.322 Sum_probs=26.6
Q ss_pred cEEEEC-CchhHHHHHHhhhccCc--eEEEEcC
Q 018704 64 RVVVLG-SGWAGCRLMKGIDTSLY--DVVCVSP 93 (351)
Q Consensus 64 ~VvIIG-~G~aGl~aA~~L~~~g~--~v~vie~ 93 (351)
+|.||| +|..|-++|+.|...++ +++|+|-
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di 34 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI 34 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence 799999 69999999999988765 6999995
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=90.67 E-value=0.082 Score=45.58 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=28.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.|+|||+|..|+-+|..|++.| .+|.+++++
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG--------------~~VlvLEaG 39 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAG--------------IPTQIVEMG 39 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence 7999999999999999999876 899999985
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=90.51 E-value=0.13 Score=41.00 Aligned_cols=36 Identities=33% Similarity=0.324 Sum_probs=31.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCce-EEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~~ 96 (351)
...+||+.|+|.||+..|..|.+.+.+ +.++|++..
T Consensus 25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL 61 (222)
T d1vl6a1 25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI 61 (222)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred hhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence 347899999999999999999887765 999998744
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=90.44 E-value=0.1 Score=38.88 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=29.5
Q ss_pred CcEEEECCchhHHHHHHhhhccC-ceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g-~~v~vie~~~~ 96 (351)
++|.+||+|.-|-+.|..|.+.| +++.++++++.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~ 35 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE 35 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence 47999999999999999998876 88999998653
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=90.44 E-value=0.093 Score=40.11 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=30.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..++|+|+|+|=++-+++..|.+.+.+++|+.|..
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~ 51 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 51 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence 34789999999999999999998888899998854
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.17 E-value=0.029 Score=45.13 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=21.0
Q ss_pred eEEEECCChHHHHHHHHHHHHH
Q 018704 232 HCVVVGGGPTGVEFSGELSDFI 253 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~ 253 (351)
||+|||+|.+|+-.|..|++.|
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G 23 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERY 23 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHH
T ss_pred EEEEECchHHHHHHHHHHHHCC
Confidence 7999999999999999999877
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.12 E-value=0.15 Score=43.77 Aligned_cols=35 Identities=11% Similarity=0.277 Sum_probs=31.3
Q ss_pred CCCcEEEEC-CchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLG-SGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG-~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
++++|+|.| +|+.|-..+.+|.+.|++|+++|...
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 567899999 69999999999999999999998643
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=90.08 E-value=0.11 Score=44.37 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=28.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.++|||+|..|+-+|..|++.| .+|.+++++
T Consensus 6 DviIVGsG~aG~v~A~~La~~G--------------~kVlvLEaG 36 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAG--------------YKVAMFDIG 36 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHhhCC--------------CeEEEEecC
Confidence 7999999999999999999866 899999985
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.93 E-value=0.22 Score=39.72 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=29.8
Q ss_pred CCcEEEECCchhHHHHHHhhhc--------------------cCc-eEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT--------------------SLY-DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~--------------------~g~-~v~vie~~~~ 96 (351)
..+|+|||+|-.+|=||..|.+ .|. +|+++.++..
T Consensus 39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~ 94 (225)
T d1cjca1 39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 94 (225)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence 5899999999999999999987 355 5999988664
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.92 E-value=0.17 Score=37.40 Aligned_cols=33 Identities=27% Similarity=0.205 Sum_probs=26.6
Q ss_pred CcEEEEC-CchhHHHHHHhhhc---cCceEEEEcCCC
Q 018704 63 PRVVVLG-SGWAGCRLMKGIDT---SLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~VvIIG-~G~aGl~aA~~L~~---~g~~v~vie~~~ 95 (351)
++|.||| +|..|-++|+.|.. ...++.++|..+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~ 37 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence 4799999 59999999998853 346799999754
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=89.91 E-value=0.22 Score=37.89 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=30.0
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
...|+|+|+|..|+.++..++..|. +|++++.++.
T Consensus 29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~ 64 (176)
T d2jhfa2 29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD 64 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence 3579999999999999999999885 7888887654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=89.89 E-value=0.19 Score=34.26 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=31.4
Q ss_pred CCCCcEEEECCchhHHHH-HHhhhccCceEEEEcCCC
Q 018704 60 NEKPRVVVLGSGWAGCRL-MKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 60 ~~~~~VvIIG~G~aGl~a-A~~L~~~g~~v~vie~~~ 95 (351)
...+++-+||-|=+|+++ |..|.+.|++|+--|...
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~ 42 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD 42 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 355789999999999888 999999999999999753
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=89.66 E-value=0.098 Score=44.32 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=28.3
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.|+|||+|.+|+-.|..+++.| .+|.+++..
T Consensus 7 DVvVIG~G~AGl~AAl~aa~~G--------------~~V~liEK~ 37 (336)
T d2bs2a2 7 DSLVIGGGLAGLRAAVATQQKG--------------LSTIVLSLI 37 (336)
T ss_dssp SEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEecC
Confidence 6999999999999999999877 899999874
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=89.64 E-value=0.43 Score=35.78 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=27.9
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
..+|+|||+|.+|..+|..|...+ --.++.+++..
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~------------l~~ElvLiD~~ 54 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKS------------LADELALVDVL 54 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTT------------CCSEEEEECSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcC------------CCcEEEEEEec
Confidence 359999999999999999998754 11478888764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=89.17 E-value=0.15 Score=38.80 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=28.2
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~ 95 (351)
...|+|+|+|+.|+.++..++..|. .|+++|+++
T Consensus 33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~ 67 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE 67 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred CCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence 3679999999999999999988876 567778754
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=89.03 E-value=0.13 Score=40.04 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=27.9
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
++|+|||+|..|.-+|..|++.+ .+|++..|+
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g--------------~~V~l~~r~ 39 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKC--------------REVCVWHMN 39 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTE--------------EEEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEec
Confidence 48999999999999999998765 789998874
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=88.61 E-value=0.25 Score=32.12 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
|+|.|+|||.-|--++....++| .++.+++.+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG--------------~~v~vldp~~ 34 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLG--------------IAVWPVGLDA 34 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGT--------------EEEEEECTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHcC--------------CEEEEEcCCC
Confidence 48999999999999999999888 9999998753
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=88.43 E-value=0.26 Score=37.79 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=29.7
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
-+|+|+|+|..|...+.....+| ..|++++.+
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lG--------------A~V~v~D~~ 61 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLG--------------AVVMATDVR 61 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred cEEEEEcCcHHHHHHHHHHHHcC--------------CEEEEEecc
Confidence 49999999999999999999998 899999875
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=88.36 E-value=0.47 Score=39.00 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=40.4
Q ss_pred CeEEEECC-ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcC
Q 018704 231 LHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG 304 (351)
Q Consensus 231 ~~v~VvGg-G~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~ 304 (351)
++|+|+|| |.+|..++..|...| .+|+.+.|+.... +.. .......+...+++++.+
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G--------------~~V~~~~R~~~~~--~~~-~~~~~~~~~~~~v~~v~~ 61 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLG--------------HPTYVLFRPEVVS--NID-KVQMLLYFKQLGAKLIEA 61 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT--------------CCEEEECCSCCSS--CHH-HHHHHHHHHTTTCEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--------------CEEEEEECCCccc--chh-HHHHHhhhccCCcEEEEe
Confidence 48999996 999999999998876 8899998864322 111 222334556678888765
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=88.12 E-value=0.24 Score=42.12 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCCcEEEECC-chhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+++.|+|+|| |..|-+.+..|.+.|++|+++-++.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~ 37 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL 37 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence 4578999995 9999999999999999999997653
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.90 E-value=0.25 Score=37.26 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=29.3
Q ss_pred CCcEEEEC-CchhHHHHHHhhhccCc-eEEEEcCCCc
Q 018704 62 KPRVVVLG-SGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG-~G~aGl~aA~~L~~~g~-~v~vie~~~~ 96 (351)
..+|+|+| +|+.|+.++..++..|. +|+++++++.
T Consensus 28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~ 64 (170)
T d1jvba2 28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE 64 (170)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH
T ss_pred CCEEEEEeccccceeeeeecccccccccccccccchh
Confidence 46799999 59999999999988885 7999987653
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.49 E-value=0.21 Score=44.08 Aligned_cols=34 Identities=26% Similarity=0.555 Sum_probs=30.7
Q ss_pred CCcEEEECCchhHHHHHHhhhccCc-eEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~~ 95 (351)
+.+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 3689999999999999999999999 599999753
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.42 E-value=0.14 Score=38.32 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=26.9
Q ss_pred CCcEEEECC-chhHHHHHHhhhccC-------ceEEEEcCCCc
Q 018704 62 KPRVVVLGS-GWAGCRLMKGIDTSL-------YDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~-G~aGl~aA~~L~~~g-------~~v~vie~~~~ 96 (351)
+.+|.|||| |..|.++|+.|...+ .+..++|....
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~ 45 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM 45 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc
Confidence 469999995 999999999997633 25777776443
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=87.31 E-value=0.27 Score=38.38 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=31.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+.|.|||.|-.|-.+|..|...|.+|+.+|+..
T Consensus 45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~ 78 (199)
T d1dxya1 45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP 78 (199)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred ceeeeeeecccccccccccccccceeeeccCCcc
Confidence 4789999999999999999999999999999843
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=87.17 E-value=0.23 Score=42.01 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=28.5
Q ss_pred CcEEEEC-CchhHHHHHHhhhccCceEEEEcC
Q 018704 63 PRVVVLG-SGWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 63 ~~VvIIG-~G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
++|+|+| +|+.|-..+..|.+.|++|+++|+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 4699999 599999999999999999999985
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=87.01 E-value=0.29 Score=38.13 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=31.7
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+.|.|||.|..|-.+|..|...|.+|..+|+..
T Consensus 42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~ 76 (197)
T d1j4aa1 42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR 76 (197)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence 35789999999999999999999999999999754
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.00 E-value=0.69 Score=35.91 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=28.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
+|.|||.|..|+-+|..|+..| .+|+.++.+
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g--------------~~V~g~D~n 32 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARG--------------HEVIGVDVS 32 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred EEEEECCCHhHHHHHHHHHhCC--------------CcEEEEeCC
Confidence 6999999999999999999877 899999875
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=86.96 E-value=0.31 Score=33.11 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=50.6
Q ss_pred cccCeEEEECCChHHHHH-HHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-
Q 018704 228 SRLLHCVVVGGGPTGVEF-SGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI- 305 (351)
Q Consensus 228 ~~~~~v~VvGgG~~a~e~-a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~- 305 (351)
+..+++-+||-|-+|+-. |..|...| .+|+--++.. . ...+.+.+.|+++..+.
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G--------------~~VsGSD~~~-----~-----~~~~~L~~~Gi~v~~g~~ 61 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEG--------------YQISGSDIAD-----G-----VVTQRLAQAGAKIYIGHA 61 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHT--------------CEEEEEESCC-----S-----HHHHHHHHTTCEEEESCC
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCC--------------CEEEEEeCCC-----C-----hhhhHHHHCCCeEEECCc
Confidence 455799999988888665 88888887 8898887642 1 12245566799887762
Q ss_pred EEEEeCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 306 VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 306 v~~v~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
-..+ -.+|.||+..+...+
T Consensus 62 ~~~i------------~~~d~vV~S~AI~~~ 80 (96)
T d1p3da1 62 EEHI------------EGASVVVVSSAIKDD 80 (96)
T ss_dssp GGGG------------TTCSEEEECTTSCTT
T ss_pred cccC------------CCCCEEEECCCcCCC
Confidence 1111 136899999988765
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=86.93 E-value=0.29 Score=41.53 Aligned_cols=34 Identities=29% Similarity=0.220 Sum_probs=31.1
Q ss_pred CCcEEEEC-CchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLG-SGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG-~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.++|+|.| +|+.|...+..|.+.|++|..+++..
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~ 42 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA 42 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 48999999 69999999999999999999999754
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=86.69 E-value=0.31 Score=39.83 Aligned_cols=35 Identities=3% Similarity=-0.038 Sum_probs=29.6
Q ss_pred CCcEEEECC-c--hhHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGS-G--WAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~-G--~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+.++|.|| | =.|.++|..|++.|++|++.++++.
T Consensus 5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~ 42 (274)
T d2pd4a1 5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES 42 (274)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 477999996 4 3799999999999999999998643
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=86.63 E-value=0.48 Score=31.59 Aligned_cols=69 Identities=17% Similarity=0.058 Sum_probs=48.5
Q ss_pred eEEEECCChHHHH-HHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCe-EEEE
Q 018704 232 HCVVVGGGPTGVE-FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (351)
Q Consensus 232 ~v~VvGgG~~a~e-~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~-v~~v 309 (351)
|+-+||-|-+|+- +|..|.+.| .+|+--++.. ....+.|++.|+++..+. ...+
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~G--------------~~VsGSD~~~----------~~~t~~L~~~Gi~i~~gh~~~~i 58 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSNG--------------NDVYGSNIEE----------TERTAYLRKLGIPIFVPHSADNW 58 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--------------CEEEEECSSC----------CHHHHHHHHTTCCEESSCCTTSC
T ss_pred EEEEEeECHHHHHHHHHHHHhCC--------------CeEEEEeCCC----------ChhHHHHHHCCCeEEeeeccccc
Confidence 7888998888874 577777776 8888887642 123345888999998762 1111
Q ss_pred eCCeEEecCCcEEeccEEEEecCCCCc
Q 018704 310 DSQKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 310 ~~~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
-.+|.||+..+...+
T Consensus 59 ------------~~~d~vV~SsAI~~~ 73 (89)
T d1j6ua1 59 ------------YDPDLVIKTPAVRDD 73 (89)
T ss_dssp ------------CCCSEEEECTTCCTT
T ss_pred ------------CCCCEEEEecCcCCC
Confidence 248999999988766
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=86.57 E-value=0.28 Score=39.58 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=30.0
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
++|+|||.|-.|..+|..|++.|- .++++++.+
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gv-------------g~i~lvD~D 63 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGV-------------GNLTLLDFD 63 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC-------------SEEEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCC-------------CeEEEECCc
Confidence 499999999999999999999983 689999886
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.41 E-value=0.34 Score=36.71 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=28.7
Q ss_pred CCcEEEECC-chhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...|+|+|| |+.|+.+...+...|.+|+++...+
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~ 63 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTE 63 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEEeccccccccccccccccCcccccccccc
Confidence 357999996 9999999888888999998887644
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.31 E-value=0.39 Score=40.70 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=28.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.|+|||+|..|+-.|..+++.+. +.+.+|.++++.
T Consensus 23 DVlIIG~G~AGl~AA~~aa~~~~----------~~G~~V~vieK~ 57 (356)
T d1jnra2 23 DILIIGGGFSGCGAAYEAAYWAK----------LGGLKVTLVEKA 57 (356)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHT----------TTTCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHHHH----------hCcCEEEEEeCC
Confidence 79999999999999999887541 235899999874
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=86.20 E-value=0.47 Score=36.77 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=31.9
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+.|.|||.|-.|-..|..|...|++|..+|+..
T Consensus 48 ~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~ 82 (193)
T d1mx3a1 48 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL 82 (193)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred eCceEEEeccccccccceeeeeccccceeeccCcc
Confidence 34789999999999999999999999999999854
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.17 E-value=0.3 Score=40.80 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=29.2
Q ss_pred CCcEEEEC-CchhHHHHHHhhhccCceEEEEcC
Q 018704 62 KPRVVVLG-SGWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 62 ~~~VvIIG-~G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
+++|+|.| +|+.|-..+.+|.+.|++|+.+|+
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~ 33 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN 33 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 36899999 599999999999999999999985
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=86.15 E-value=0.99 Score=33.97 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=27.9
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
..|+|+|+|+|-+|--++..|...+ .+++++-|.
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~--------------~~i~I~nR~ 50 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQ--------------QNIVLANRT 50 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTT--------------CEEEEEESS
T ss_pred CCCEEEEECCcHHHHHHHHHHcccC--------------ceeeeccch
Confidence 4469999999999988887777543 789999885
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=86.05 E-value=0.39 Score=36.27 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=29.3
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
++|+|+|+|+|-+|--++..|...+ .+++++.|.
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g--------------~~i~I~nRt 50 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLD--------------CAVTITNRT 50 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHhcccc--------------eEEEeccch
Confidence 4579999999999999999998876 789999875
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.02 E-value=0.46 Score=35.03 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=28.3
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
..++|.|||+|.+|..+|..|...+ -..++.+++..
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~------------l~~el~L~Di~ 40 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQG------------IADEIVLIDAN 40 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHT------------CCSEEEEECSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcC------------CCceEEEEeec
Confidence 4459999999999999999887654 12578888864
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=85.96 E-value=0.45 Score=35.02 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=27.0
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
|+|+|||+|++|..+|..|...+ -..++.+++.+
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~------------~~~elvL~Di~ 35 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQG------------VADDYVFIDAN 35 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT------------CCSEEEEECSS
T ss_pred CeEEEECcCHHHHHHHHHHHhcC------------CCceEEEEecc
Confidence 59999999999999999887654 11578888764
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.77 E-value=0.46 Score=33.17 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
.+|.|+|||..|.-++....++| .++.++++++
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG--------------~~v~v~d~~~ 44 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLG--------------VEVIAVDRYA 44 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTT--------------CEEEEEESST
T ss_pred CEEEEEeCCHHHHHHHHHHHHCC--------------CEEEEEcCCC
Confidence 48999999999999999998888 9999999863
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=85.76 E-value=0.88 Score=36.89 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=39.8
Q ss_pred CeEEEECC-ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcC
Q 018704 231 LHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG 304 (351)
Q Consensus 231 ~~v~VvGg-G~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~ 304 (351)
|||+|+|| |.+|-.++..|.+.| .+|+.+.|....... .. .....+.+...+++++.+
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~G--------------~~V~~l~R~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 62 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDLG--------------HPTFLLVRESTASSN-SE-KAQLLESFKASGANIVHG 62 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT--------------CCEEEECCCCCTTTT-HH-HHHHHHHHHTTTCEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC--------------CeEEEEECCCccccc-hh-HHHHHHhhccCCcEEEEe
Confidence 59999997 999999999998766 889999986422211 11 122234455667777654
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.74 E-value=0.37 Score=36.83 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=26.6
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 275 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~ 275 (351)
+|+|||+|..|.-+|..|++.+ .+|++..|
T Consensus 2 kI~ViGaG~~GtalA~~la~~g--------------~~V~l~~r 31 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNG--------------NEVRIWGT 31 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHC--------------CEEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHCC--------------CEEEEEEe
Confidence 7999999999999999999866 78888766
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=85.56 E-value=0.43 Score=35.99 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=28.6
Q ss_pred CCcEEEECCchhHHHHHHhhhccCce-EEEEcCCCc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~-v~vie~~~~ 96 (351)
...|+|+|+|..|+.++..++..|.+ |++++.++.
T Consensus 29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~ 64 (176)
T d2fzwa2 29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD 64 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHH
Confidence 35799999999999999999999965 777776543
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=85.27 E-value=0.39 Score=38.69 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=25.3
Q ss_pred EEEECC-chhHHHHHHhhhccCceEEEEcCCC
Q 018704 65 VVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 65 VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
|+|.|| +=.|.++|..|++.|++|+++++++
T Consensus 4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~ 35 (257)
T d1fjha_ 4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD 35 (257)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 455574 4578999999999999999999764
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=85.17 E-value=0.3 Score=41.86 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=27.8
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.++|||+|..|+-+|..|++.+ .+|.+++++
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g--------------~~VlvLEaG 34 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAG--------------KKVLLLERG 34 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHhhCC--------------CeEEEEEcc
Confidence 7999999999999999998765 789999886
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=85.06 E-value=0.56 Score=36.06 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=32.0
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
....|.|||.|-.|...|..|...|.+|..+|+..
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d2naca1 43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR 77 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred cccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence 45799999999999999999999999999999854
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=85.02 E-value=0.5 Score=35.11 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=26.4
Q ss_pred ccCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 229 ~~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
+.++|+|||+|.+|.-+|..|...+ -.++.+++.+
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~-------------~~el~L~D~~ 40 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRE-------------LADVVLYDVV 40 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHT-------------CCEEEEECSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC-------------CceEEEEEec
Confidence 3459999999999998887766533 1478888765
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=84.88 E-value=0.7 Score=38.09 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=29.2
Q ss_pred CCCcEEEEC-CchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLG-SGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG-~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+.+.++|.| +|=.|.++|..|++.|++|++.+++.
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~ 59 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM 59 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 346677777 56678999999999999999999865
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=84.69 E-value=0.64 Score=34.16 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=27.9
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
++|+|||+|.+|.-+|..|+..+ -..++.+++++
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~~------------~~~elvL~D~~ 39 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQG------------IAEEFVIVDVV 39 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT------------CCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhcC------------CCcEEEEeecc
Confidence 49999999999999999988754 12579999875
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=84.63 E-value=0.33 Score=39.54 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=29.2
Q ss_pred CCcEEEECCch-hHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGW-AGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~-aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+.++|.||+- .|.++|..|++.|++|++.+++..
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~ 44 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA 44 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 46778888654 789999999999999999998654
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=84.57 E-value=0.41 Score=36.20 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=28.4
Q ss_pred CCcEEEECC-chhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
...|+|.|| |+.|+.+...+...|.+|+.++..+
T Consensus 28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~ 62 (171)
T d1iz0a2 28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP 62 (171)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence 357889895 9999999888888999988887654
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.56 E-value=0.42 Score=38.31 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=29.8
Q ss_pred CCCcEEEECCc-hhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSG-WAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G-~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
+.+.++|.||+ =.|.++|..|++.|++|++.+++..
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~ 42 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG 42 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 44678888865 4789999999999999999998653
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.54 E-value=0.85 Score=34.42 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=27.8
Q ss_pred eEEEE-CCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVV-GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~Vv-GgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
+|+|| |+|.+|..+|..|++.| .+|++..|+
T Consensus 2 ki~vigGaG~iG~alA~~la~~G--------------~~V~l~~R~ 33 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLG--------------HEIVVGSRR 33 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTT--------------CEEEEEESS
T ss_pred EEEEEeCCcHHHHHHHHHHHHCC--------------CEEEEEECC
Confidence 68999 56999999999999877 899999986
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=84.44 E-value=0.37 Score=39.13 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=28.6
Q ss_pred CCCcEEEECC-ch--hHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGS-GW--AGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~-G~--aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+.++|.|| |- .|.++|..|++.|.+|++.+++.
T Consensus 5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~ 42 (268)
T d2h7ma1 5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR 42 (268)
T ss_dssp TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence 3478999995 54 68899999999999999988654
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=84.40 E-value=0.21 Score=42.21 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=28.2
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.|+|||+|..|+-.|..+++.| .+|.++++.
T Consensus 9 DVlVVG~G~AGl~AAl~aa~~G--------------~~V~lleK~ 39 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQSG--------------QTCALLSKV 39 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHHTT--------------CCCEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHcC--------------CeEEEEeCC
Confidence 7999999999999999999877 789999874
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=84.34 E-value=0.39 Score=35.40 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=29.6
Q ss_pred ccCeEEEEC-CChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 229 RLLHCVVVG-GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 229 ~~~~v~VvG-gG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
..++|+||| .|..|.-+|..|.+.| .+|+++++.
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G--------------~~V~~~d~~ 42 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASG--------------YPISILDRE 42 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTT--------------CCEEEECTT
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcC--------------CCcEecccc
Confidence 346999999 6999999999998776 889999885
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=84.29 E-value=0.45 Score=38.50 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=28.8
Q ss_pred CCcEEEECCch---hHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGW---AGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~---aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+.++|.||+- .|.+.|..|++.|++|++.++.+.
T Consensus 8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~ 45 (256)
T d1ulua_ 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER 45 (256)
T ss_dssp TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 46788998642 699999999999999999887543
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=84.24 E-value=0.41 Score=36.32 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=25.0
Q ss_pred CcEEEECCchhHHHHHHh--hhc----cCceEEEEcCCCc
Q 018704 63 PRVVVLGSGWAGCRLMKG--IDT----SLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~--L~~----~g~~v~vie~~~~ 96 (351)
.+|+|||||..|.+.+.. |.+ .+.+++++|.++.
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~ 42 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE 42 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH
T ss_pred cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch
Confidence 689999999999775542 322 2458999998764
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.01 E-value=0.58 Score=37.32 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=29.4
Q ss_pred CCcEEEECC-chhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+.|+|.|| |=.|.++|..|++.|++|.++|...
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~ 36 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE 36 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 478999997 5589999999999999999998654
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.94 E-value=0.4 Score=40.49 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=29.3
Q ss_pred CCcEEEEC-CchhHHHHHHhhhccCceEEEEcC
Q 018704 62 KPRVVVLG-SGWAGCRLMKGIDTSLYDVVCVSP 93 (351)
Q Consensus 62 ~~~VvIIG-~G~aGl~aA~~L~~~g~~v~vie~ 93 (351)
.++|+|.| +|+.|-..+.+|.+.|++|+++|+
T Consensus 2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 36899999 599999999999999999999985
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=83.81 E-value=0.53 Score=35.15 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=27.4
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
||.|||.|..|.-+|..|.+.| .+|+.++|+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g--------------~~V~~~d~~ 32 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRG--------------HYLIGVSRQ 32 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred EEEEEeecHHHHHHHHHHHHCC--------------CEEEEEECC
Confidence 7999999999999999998776 788888774
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=83.78 E-value=0.64 Score=35.71 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=32.3
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCCc
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
....|.|||.|..|-..|..|...|.+|..+|+...
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~ 78 (188)
T d1sc6a1 43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK 78 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred cceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence 457899999999999999999999999999998543
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=83.77 E-value=0.58 Score=34.20 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=26.1
Q ss_pred CeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 231 ~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
++|.|||+|.+|..+|..|...+ -.++.+++..
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~-------------l~dl~l~D~~ 34 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKE-------------LGDIVLLDIV 34 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT-------------CSEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCC-------------cceEEEEeec
Confidence 38999999999999998887543 1478888764
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.55 E-value=0.48 Score=35.85 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=30.3
Q ss_pred CCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.++|+|||=|.=|.+=|..|+..|++|+|==+..
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~g 49 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG 49 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCC
Confidence 4789999999999999999999999998866544
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.42 E-value=0.37 Score=43.71 Aligned_cols=32 Identities=9% Similarity=0.186 Sum_probs=29.6
Q ss_pred CcEEEECCchhHHHHHHhhhccCc-eEEEEcCC
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~-~v~vie~~ 94 (351)
.+|+|||+|..|..+|+.|...|. +++|+|.+
T Consensus 26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d 58 (529)
T d1yova1 26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGN 58 (529)
T ss_dssp CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 689999999999999999999997 59999965
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=83.40 E-value=0.43 Score=38.51 Aligned_cols=35 Identities=9% Similarity=0.156 Sum_probs=28.7
Q ss_pred CCcEEEECCch---hHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGW---AGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~---aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+.++|.||+- -|.++|..|++.|++|++.++++.
T Consensus 5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~ 42 (258)
T d1qsga_ 5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK 42 (258)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 46788888754 468899999999999999988654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=83.16 E-value=0.29 Score=36.46 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=20.8
Q ss_pred CCcEEEECC-chhHHHHHHhhhccC
Q 018704 62 KPRVVVLGS-GWAGCRLMKGIDTSL 85 (351)
Q Consensus 62 ~~~VvIIG~-G~aGl~aA~~L~~~g 85 (351)
+.+|.|||| |..|.++|+.|...+
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~ 28 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGE 28 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcc
Confidence 359999996 999999999998744
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.11 E-value=0.44 Score=41.08 Aligned_cols=30 Identities=30% Similarity=0.571 Sum_probs=28.3
Q ss_pred CcEEEEC-CchhHHHHHHhhhccCceEEEEc
Q 018704 63 PRVVVLG-SGWAGCRLMKGIDTSLYDVVCVS 92 (351)
Q Consensus 63 ~~VvIIG-~G~aGl~aA~~L~~~g~~v~vie 92 (351)
++|+|.| +|+.|-..+..|.+.|++|+++|
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 6899999 59999999999999999999998
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=83.01 E-value=0.59 Score=35.53 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=26.5
Q ss_pred CCcEEEECC-chhHHHHHHhhhcc---C----ceEEEEcCCC
Q 018704 62 KPRVVVLGS-GWAGCRLMKGIDTS---L----YDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~-G~aGl~aA~~L~~~---g----~~v~vie~~~ 95 (351)
..+|.|+|| |..|.++|+.|++. | ..+.++|...
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~ 65 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER 65 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc
Confidence 458999996 99999999999863 2 3577777644
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.78 E-value=0.37 Score=37.83 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=26.2
Q ss_pred CCcEEEEC-CchhHHHHHHhhhccCceEEEEc
Q 018704 62 KPRVVVLG-SGWAGCRLMKGIDTSLYDVVCVS 92 (351)
Q Consensus 62 ~~~VvIIG-~G~aGl~aA~~L~~~g~~v~vie 92 (351)
.++|+|.| +|..|...+..|.+.|++|++++
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~ 34 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG 34 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence 47899999 59999999999999997755544
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=82.70 E-value=0.59 Score=37.26 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=29.3
Q ss_pred CCcEEEECC-chhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+.++|.|| +=.|.++|..|++.|++|++.+++.
T Consensus 4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~ 38 (234)
T d1o5ia_ 4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE 38 (234)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 477999996 4478999999999999999999864
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=82.55 E-value=0.64 Score=37.01 Aligned_cols=35 Identities=26% Similarity=0.195 Sum_probs=31.6
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..++|+|-|.|-.|..+|..|.+.|.++++.|.+.
T Consensus 38 ~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~ 72 (230)
T d1leha1 38 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNK 72 (230)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccH
Confidence 35799999999999999999999999999998653
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=82.51 E-value=0.54 Score=37.43 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=29.0
Q ss_pred CcEEEECC-chhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+|+|.|| |=.|.+.|..|++.|++|+++++...
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~ 37 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN 37 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 46999995 66789999999999999999998653
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=82.50 E-value=1.1 Score=34.23 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=29.8
Q ss_pred ccCeEEEEC-CChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 229 RLLHCVVVG-GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 229 ~~~~v~VvG-gG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
++|+++|.| +|-+|..+|..|.+.| .+|+++.|+
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G--------------~~V~~~~r~ 56 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEG--------------AEVVLCGRK 56 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhc--------------cchhhcccc
Confidence 457999999 5889999999999887 899999986
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.49 E-value=0.44 Score=38.95 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=29.3
Q ss_pred CCcEEEECCch-hHHHHHHhhhccCceEEEEcCCCc
Q 018704 62 KPRVVVLGSGW-AGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 62 ~~~VvIIG~G~-aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
.+.++|.||+- .|.++|..|++.|++|++++++..
T Consensus 14 GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~ 49 (269)
T d1xu9a_ 14 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE 49 (269)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 46788888654 789999999999999999998653
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.40 E-value=0.68 Score=30.83 Aligned_cols=29 Identities=28% Similarity=0.259 Sum_probs=26.0
Q ss_pred CcEEEECCchhHHHHHHhhhccCceEEEE
Q 018704 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCV 91 (351)
Q Consensus 63 ~~VvIIG~G~aGl~aA~~L~~~g~~v~vi 91 (351)
++|+|||+|-=-.+.|+.|.+...++.++
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~~v~~~ 29 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQGYEVHFY 29 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCeEEEe
Confidence 47999999999999999999988787776
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.30 E-value=0.27 Score=40.74 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=28.9
Q ss_pred CCcEEEECCchhHHHHHHhhhcc----Cc-------eEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS----LY-------DVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~----g~-------~v~vie~~~~~ 97 (351)
..+|||.|+|.||+.+|..|... |+ +++++|++...
T Consensus 25 d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv 71 (294)
T d1pj3a1 25 EHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLL 71 (294)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEEC
T ss_pred HcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCc
Confidence 46899999999999999998653 32 59999986543
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.12 E-value=0.9 Score=34.72 Aligned_cols=35 Identities=26% Similarity=0.137 Sum_probs=31.8
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
..+.+.|||.|-.|-..|..|...|.+|..+|+..
T Consensus 43 ~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~ 77 (184)
T d1ygya1 43 FGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV 77 (184)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred cceeeeeccccchhHHHHHHhhhccceEEeecCCC
Confidence 45789999999999999999999999999999754
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=81.99 E-value=0.64 Score=37.28 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=28.5
Q ss_pred CCcEEEECC-chhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+.++|.|| +=.|.+.|..|++.|++|++.+++.
T Consensus 5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (242)
T d1ulsa_ 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEE 39 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 466778886 4489999999999999999999864
|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Probab=81.60 E-value=0.31 Score=40.59 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=28.9
Q ss_pred CCcEEEECCchhHHHHHHhhhc----cC-------ceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDT----SL-------YDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~----~g-------~~v~vie~~~~~ 97 (351)
..+|||.|+|.||+.+|..|.+ .| -+++++|++...
T Consensus 25 d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv 71 (308)
T d1o0sa1 25 QEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLV 71 (308)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEEC
T ss_pred HcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCc
Confidence 4689999999999999999865 23 249999987543
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=81.51 E-value=0.91 Score=36.42 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=29.5
Q ss_pred CCCcEEEECCchhHHHHHHhhhccCceEEEEcCC
Q 018704 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (351)
Q Consensus 61 ~~~~VvIIG~G~aGl~aA~~L~~~g~~v~vie~~ 94 (351)
..++|+|=|.|-.|..+|..|.+.|.+|+-++..
T Consensus 30 ~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~ 63 (242)
T d1v9la1 30 EGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI 63 (242)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecc
Confidence 3579999999999999999999999997755543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=81.33 E-value=0.69 Score=37.38 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=26.4
Q ss_pred CcE-EEECCc-hhHHHHHHhhhccCceEEEEcCCC
Q 018704 63 PRV-VVLGSG-WAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 63 ~~V-vIIG~G-~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
++| +|.||+ =.|.+.|..|++.|++|++.+++.
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~ 35 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND 35 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 356 555754 478999999999999999999854
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=81.24 E-value=0.8 Score=37.12 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=28.3
Q ss_pred CCcEEEECCc-hhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSG-WAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G-~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+.++|.||+ =.|.++|..|++.|++|++.+++.
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR 39 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4678888864 468899999999999999999854
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.20 E-value=0.57 Score=36.41 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=26.5
Q ss_pred CCcEEEECC-chhHHHHHHhhhccCc--eEEEEcC
Q 018704 62 KPRVVVLGS-GWAGCRLMKGIDTSLY--DVVCVSP 93 (351)
Q Consensus 62 ~~~VvIIG~-G~aGl~aA~~L~~~g~--~v~vie~ 93 (351)
+++|+|+|| |..|-..+.+|.+.|. +|+++-+
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r 36 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPAR 36 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeC
Confidence 479999998 9999999999999887 4555444
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.15 E-value=0.72 Score=36.98 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=28.7
Q ss_pred CCcEEEECCc-hhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSG-WAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G-~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+.++|.||+ =.|.++|..|++.|++|++.+++.
T Consensus 5 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (242)
T d1cyda_ 5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN 39 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4678888964 478999999999999999999864
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=81.11 E-value=0.71 Score=37.25 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=28.5
Q ss_pred CCcEEEECCc-hhHHHHHHhhhccCceEEEEcCCC
Q 018704 62 KPRVVVLGSG-WAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 62 ~~~VvIIG~G-~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
.+.++|.||+ =.|.+.|..|++.|++|++.+++.
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~ 39 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL 39 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4678888864 468899999999999999999854
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=81.01 E-value=0.51 Score=37.19 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=26.5
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.++|||+|+.|+.+|..+++++. ..|.+++..
T Consensus 5 DviIIG~GpaGl~aA~~aa~~g~-------------k~V~iie~~ 36 (238)
T d1aoga1 5 DLVVIGAGSGGLEAAWNAATLYK-------------KRVAVIDVQ 36 (238)
T ss_dssp SEEEECCSHHHHHHHHHHHHTSC-------------CCEEEEESC
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-------------CEEEEEEee
Confidence 79999999999999999998651 457787764
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.85 E-value=0.71 Score=38.28 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=30.2
Q ss_pred CcEEEECC-chhHHHHHHhhhccCceEEEEcCCCc
Q 018704 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNH 96 (351)
Q Consensus 63 ~~VvIIG~-G~aGl~aA~~L~~~g~~v~vie~~~~ 96 (351)
++|+|.|| |+.|-..+.+|.+.|++|+.+++...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~ 35 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS 35 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence 47999995 99999999999999999999997653
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=80.68 E-value=0.73 Score=37.89 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=29.6
Q ss_pred CCCcEEEECCc---hhHHHHHHhhhccCceEEEEcCCC
Q 018704 61 EKPRVVVLGSG---WAGCRLMKGIDTSLYDVVCVSPRN 95 (351)
Q Consensus 61 ~~~~VvIIG~G---~aGl~aA~~L~~~g~~v~vie~~~ 95 (351)
+.+.++|.||+ =.|.++|..|++.|.+|++.++.+
T Consensus 7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~ 44 (297)
T d1d7oa_ 7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP 44 (297)
T ss_dssp TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence 45789999975 489999999999999999988643
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=80.59 E-value=0.59 Score=35.14 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=28.5
Q ss_pred cCeEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 018704 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (351)
Q Consensus 230 ~~~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 276 (351)
.++|+|+|+|-+|--++..|...+. .+++++.|+
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~-------------~~I~I~nR~ 50 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGF-------------EKLKIYARN 50 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTC-------------CCEEEECSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-------------CEEEEeccc
Confidence 4699999999999999999988762 478888875
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=80.54 E-value=2.1 Score=34.40 Aligned_cols=85 Identities=20% Similarity=0.170 Sum_probs=50.0
Q ss_pred ccCeEEEECCC-hHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhhhcCcEEEcCeEE
Q 018704 229 RLLHCVVVGGG-PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVK 307 (351)
Q Consensus 229 ~~~~v~VvGgG-~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~v~ 307 (351)
++|.++|.||+ -+|..+|..|++.| .+|.+.+|+ .+-.+.+.+.+++.|.+++.- ..
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~G--------------a~V~~~~r~-------~~~l~~~~~~~~~~g~~~~~~-~~ 61 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEG--------------TAIALLDMN-------REALEKAEASVREKGVEARSY-VC 61 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEESC-------HHHHHHHHHHHHTTTSCEEEE-EC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--------------CEEEEEECC-------HHHHHHHHHHHHhcCCcEEEE-Ec
Confidence 45677777864 48889999999877 899999885 234455566677766544321 11
Q ss_pred EEeC-CeE----EecCCcEEeccEEEEecCCCC
Q 018704 308 DVDS-QKL----ILNDGTEVPYGLLVWSTGVGP 335 (351)
Q Consensus 308 ~v~~-~~v----~~~~g~~~~~D~vi~a~G~~p 335 (351)
++.. +.+ ...-.+--..|.+|...|..+
T Consensus 62 Dv~~~~~v~~~~~~~~~~~g~iDilVnnaG~~~ 94 (260)
T d1zema1 62 DVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQG 94 (260)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCeehhhhcccc
Confidence 1111 000 000000114799999999654
|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=80.30 E-value=0.35 Score=40.10 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=28.9
Q ss_pred CCcEEEECCchhHHHHHHhhhcc----C-------ceEEEEcCCCcc
Q 018704 62 KPRVVVLGSGWAGCRLMKGIDTS----L-------YDVVCVSPRNHM 97 (351)
Q Consensus 62 ~~~VvIIG~G~aGl~aA~~L~~~----g-------~~v~vie~~~~~ 97 (351)
..+|||.|+|.||+.+|..|... | -++.++|++...
T Consensus 25 d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv 71 (298)
T d1gq2a1 25 DHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLI 71 (298)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEEC
T ss_pred HcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcc
Confidence 46899999999999999998642 3 269999987543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=80.28 E-value=2.3 Score=34.38 Aligned_cols=95 Identities=19% Similarity=0.142 Sum_probs=53.9
Q ss_pred CCCCCHhhh--cccCeEEEECC-ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCCCcHHHHHHHHHHhh
Q 018704 219 VPGISEEEK--SRLLHCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS 295 (351)
Q Consensus 219 ~p~~~~~~~--~~~~~v~VvGg-G~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~ 295 (351)
.|+...+.. -++|.++|.|| +-+|..+|..|++.| .+|.+.+++. .+..+.+.+.++
T Consensus 5 ~~~~~~~~~~sL~gK~~lITGas~GIG~aia~~la~~G--------------a~Vvi~~~~~------~~~~~~~~~~~~ 64 (272)
T d1g0oa_ 5 IPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRG--------------CKVIVNYANS------TESAEEVVAAIK 64 (272)
T ss_dssp CCSCSSGGGGCCTTCEEEETTTTSHHHHHHHHHHHHTT--------------CEEEEEESSC------HHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHHHcC--------------CEEEEEeCCc------hHHHHHHHHHHH
Confidence 455443322 33467777774 457888999999877 8999988752 344555666667
Q ss_pred hcCcEEEcCe--EEEEeC-----CeEEecCCcEEeccEEEEecCCCCc
Q 018704 296 KSGVRLVRGI--VKDVDS-----QKLILNDGTEVPYGLLVWSTGVGPS 336 (351)
Q Consensus 296 ~~gV~~~~~~--v~~v~~-----~~v~~~~g~~~~~D~vi~a~G~~p~ 336 (351)
+.|.+++.-. +.+.+. +.+.-..| ..|.+|.+.|..+.
T Consensus 65 ~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g---~idilV~nag~~~~ 109 (272)
T d1g0oa_ 65 KNGSDAACVKANVGVVEDIVRMFEEAVKIFG---KLDIVCSNSGVVSF 109 (272)
T ss_dssp HTTCCEEEEECCTTCHHHHHHHHHHHHHHHS---CCCEEEECCCCCCC
T ss_pred hhCCceeeEeCCCCCHHHHHHHHHHHHHHhC---CCCccccccccchh
Confidence 7665543321 110000 00000112 36889988887655
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=80.25 E-value=0.92 Score=33.05 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=26.9
Q ss_pred eEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 018704 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (351)
Q Consensus 232 ~v~VvGgG~~a~e~a~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 277 (351)
+|+|||+|.+|..+|..+...+ -..++.+++..+
T Consensus 3 KI~IIGaG~VG~~~a~~l~~~~------------l~~el~L~D~~~ 36 (142)
T d1y6ja1 3 KVAIIGAGFVGASAAFTMALRQ------------TANELVLIDVFK 36 (142)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT------------CSSEEEEECCC-
T ss_pred eEEEECCCHHHHHHHHHHHhcC------------CCCEEEEEeccC
Confidence 8999999999999998887643 125799998763
|