Citrus Sinensis ID: 018713

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHcccccccccccccccEEEEcccccHHHHHHHHHHcccccccEEcccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHccccccEEEcccccHHHHHHHHHcccccEEEEEccccccEEEEEcHHHHHHHHHcccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEEccccEEEEEEEHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccEEEEccccHHHHHHHHHHHcccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHccccHHHHHcccHHHccccHHHHHHHccccccEEccccccHHHHHHHHHHccccEEEEEccccccEEEEEcHHHHHHHHHHHcccHHHHHHHHccHHHccccccccccEEEEcccHHHHHHHHHHHHccccEEEEEEccccEEEEEEEHHHHHHHHcccHHHHccc
Coil and Loop (DISEMBL)
MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFAripvlsfpnvpggrvieimadttIPDAVKILSEcnilsapvkipdapsssdwkerylGIVDYSAIILWVLETAELAAAAFSVGTataagvgtgtVGALGALalgmtgpaaVAGLTVAAAGAAVAGGlaaekgagkdaptaadRLHEDFYKVIlqeepfkstTVRSIIKsyrwapflpvatddSMLSVLLLLSKyrlrnvpiiepgtpdiknYITQSAVVqglegckgrdwfdiiasqpisdlglpfmssdeviTIQSNELILEAFKRMkdnniggipvvegqqkkivgnvsIRDIRhlllkpelfsnfr
Flexible Loop (DISEMBL)
maqaeeakevsklsscDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNIlsapvkipdapsssdWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVilqeepfksttvrSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIiepgtpdiknYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIggipvvegqqkkivgnvsirdirhlllkpelfsnfr
Low Complexity Region (SEG)
MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAElaaaafsvgtataagvgtgtvgalgalalgmtgpaavagltvaaagaavagglaaekgagkdaPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDsmlsvllllsKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR
Disordered region (IsUnstruct)
****************DAYFEAIQ****LPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDA**SSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAE*********AADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL*****
Disordered Region (DISOPRED)
*************************************TAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYK************VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP*******
Disordered Region (DISEMBL)
**************SCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLA**********TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR
Disordered Region (DISPRO)
************LSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKD*PTAA**LHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF***R
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q9CAR3	447	SNF1-related protein kina	yes	no	0.997	0.782	0.746	1e-130
Q8LBB2	424	SNF1-related protein kina	no	no	0.834	0.691	0.353	1e-53

>sp|Q9CAR3|KINGL_ARATH SNF1-related protein kinase regulatory subunit gamma-1-like OS=Arabidopsis thaliana GN=CBSCBS2 PE=2 SV=1

 Score =  466 bits (1199), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 262/351 (74%), Positives = 304/351 (86%), Gaps = 1/351 (0%)

Query: 2   AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           ++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGRVIEI
Sbjct: 4   SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 63

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
            A+T + +AVKILS+  ILSAPV   D  SS DW+ERYLGI+DYS+IILWVLE+AELAA 
Sbjct: 64  QAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 123

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A S  +ATAAGVG G VGALG  ALGMTGP A AGL  AA GAAVAGG+AAE+G GKDAP
Sbjct: 124 ALSATSATAAGVGAGAVGALGVAALGMTGPVAAAGLAAAAVGAAVAGGVAAERGIGKDAP 183

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAAD+L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 184 TAADKLGKDFYEVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 243

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+I+ G PDIKNY+TQSAVV GLEGCKGRDWFD I++ PISDLGLPFMS +EVI+I+S 
Sbjct: 244 VPVIKTGEPDIKNYVTQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEVISIESE 303

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
           ELILEAFKRM+DNNIGG+PVVEG  KKIVGN+S+RDIR+LLL+PE+FSNFR
Sbjct: 304 ELILEAFKRMRDNNIGGLPVVEGLNKKIVGNISMRDIRYLLLQPEVFSNFR 354

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBB2|KING1_ARATH SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2

 Score =  210 bits (535), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 117/331 (35%), Positives = 182/331 (54%), Gaps = 38/331 (11%)

Query: 21  EAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILS 80
           E +   +K   S  E L A F  IPV +FP     + IEI +DT++ +AV+ LS+  +LS
Sbjct: 33  EDLWDEQKPQLSPNEKLNACFESIPVSAFPLSSDSQDIEIRSDTSLAEAVQTLSKFKVLS 92

Query: 81  APVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGAL 140
           APV   DAP  + W +RY+GIV++  I++W+L   E                        
Sbjct: 93  APVVDVDAPEDASWIDRYIGIVEFPGIVVWLLHQLE------------------------ 128

Query: 141 GALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200
                    P +     VAA+              G  A T+ +     F++V+   E +
Sbjct: 129 ---------PPSPRSPAVAASNGFSHDFTTDVLDNGDSAVTSGN-----FFEVLTSSELY 174

Query: 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAV 260
           K+T VR I  ++RWAPFL +  ++S L++LLLLSKY+++++P+++ G   I+N ITQS V
Sbjct: 175 KNTKVRDISGTFRWAPFLALQKENSFLTMLLLLSKYKMKSIPVVDLGVAKIENIITQSGV 234

Query: 261 VQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPV 320
           +  L  C G  WF+    + +S++GLP MS D +I I  +E +L+AFK M+   IGGIPV
Sbjct: 235 IHMLAECAGLLWFEDWGIKTLSEVGLPIMSKDHIIKIYEDEPVLQAFKLMRRKRIGGIPV 294

Query: 321 VEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
           +E   +K VGN+S+RD++ LL  PE++ ++R
Sbjct: 295 IERNSEKPVGNISLRDVQFLLTAPEIYHDYR 325

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
357486631	443	SNF1-related protein kinase regulatory s	1.0	0.792	0.749	1e-144
225424926	444	PREDICTED: SNF1-related protein kinase r	1.0	0.790	0.792	1e-132
224140801	443	predicted protein [Populus trichocarpa]	1.0	0.792	0.752	1e-132
255558196	443	AMP-activated protein kinase, gamma regu	1.0	0.792	0.769	1e-131
356500477	443	PREDICTED: SNF1-related protein kinase r	1.0	0.792	0.760	1e-130
356498190	443	PREDICTED: SNF1-related protein kinase r	1.0	0.792	0.774	1e-129
145327199	476	Cystathionine beta-synthase (CBS) protei	0.997	0.735	0.746	1e-129
42563087	447	Cystathionine beta-synthase (CBS) protei	0.997	0.782	0.746	1e-129
297841713	447	CBS domain-containing protein [Arabidops	0.997	0.782	0.740	1e-126
449434819	442	PREDICTED: SNF1-related protein kinase r	0.997	0.791	0.769	1e-125

>gi|357486631|ref|XP_003613603.1| SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula] gi|355514938|gb|AES96561.1| SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 263/351 (74%), Positives = 307/351 (87%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           MA  +E +  ++LS CD YFE IQSRKKLP +LQETLT +FA+IPV SFP VPGG+V+EI
Sbjct: 1   MAHEQEVRTSTQLSKCDRYFETIQSRKKLPQTLQETLTDSFAKIPVSSFPGVPGGKVVEI 60

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
           +ADT + +AVKILSE NIL+APVK PDA   SDW++RYLGI+DYSAIILWV+E+AELAA 
Sbjct: 61  LADTPVGEAVKILSESNILAAPVKDPDAGIGSDWRDRYLGIIDYSAIILWVMESAELAAV 120

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A S GTATAAGVG GTVGALGA+ALG TGPAA+AGLT AA GAAV GG+AA+K   KDAP
Sbjct: 121 ALSAGTATAAGVGAGTVGALGAIALGATGPAAIAGLTAAAVGAAVVGGVAADKTMAKDAP 180

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
            AA+ L EDFYKVILQEEPFKSTTVRSI+KSYRWAPF+PVA + +ML+VLLLLSKYRLRN
Sbjct: 181 QAANNLGEDFYKVILQEEPFKSTTVRSILKSYRWAPFVPVAKNSAMLTVLLLLSKYRLRN 240

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+IEPG  DI N+ITQSAV+QGLEGC+GRDWFD IA++P++DLGLPFMS+D+VI+IQSN
Sbjct: 241 VPVIEPGKADIVNFITQSAVIQGLEGCRGRDWFDCIAARPMADLGLPFMSADKVISIQSN 300

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
           ELILEAFK M+DN IGG+PVVEG  K IVGN+SIRDIR+LLLKPE+FSNFR
Sbjct: 301 ELILEAFKIMRDNQIGGLPVVEGPAKTIVGNLSIRDIRYLLLKPEIFSNFR 351

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424926|ref|XP_002277342.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Vitis vinifera] gi|296086419|emb|CBI32008.3| unnamed protein product [Vitis vinifera]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 278/351 (79%), Positives = 309/351 (88%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           MAQA+EAKE  +L SCDAYFE IQSRKKLP SLQE+LTAAFARIPV SFP V GG+V+EI
Sbjct: 1   MAQAQEAKESPQLLSCDAYFENIQSRKKLPRSLQESLTAAFARIPVSSFPEVLGGKVVEI 60

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
             D  I +AVK LS CNILSAPV+ PDA +S DW+ERYLGI+DYSAIILWVLE+A+LAA 
Sbjct: 61  RGDAIIAEAVKTLSLCNILSAPVRNPDAGTSLDWRERYLGIIDYSAIILWVLESAQLAAV 120

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           AFS  TATAAGV  G VGALGALALG TGPAAVAG+TVAA GAAVAGG+AA++G GKDAP
Sbjct: 121 AFSASTATAAGVSAGAVGALGALALGATGPAAVAGITVAAVGAAVAGGMAADRGMGKDAP 180

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAAD L E+FYKV+ QEEPFKSTTV+SI+KSYR APFLPVATD SMLSVLLLLSKYR+RN
Sbjct: 181 TAADHLGEEFYKVLFQEEPFKSTTVQSILKSYRSAPFLPVATDSSMLSVLLLLSKYRMRN 240

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+IEPG P +KNYITQSA+VQGLE CKGRDWFD IA+ PISDLGLPFMS +EV+TIQSN
Sbjct: 241 VPVIEPGQPFVKNYITQSAIVQGLERCKGRDWFDCIAAHPISDLGLPFMSHNEVVTIQSN 300

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
           ELILEAFK+MKDN IGG+PVVEG +KKIVGNVSIRDIR LLL P+LFSNFR
Sbjct: 301 ELILEAFKKMKDNKIGGLPVVEGPRKKIVGNVSIRDIRFLLLNPDLFSNFR 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140801|ref|XP_002323767.1| predicted protein [Populus trichocarpa] gi|222866769|gb|EEF03900.1| predicted protein [Populus trichocarpa]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 264/351 (75%), Positives = 310/351 (88%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           MA  ++  + S+LS CD+YFE IQSRKKLP SLQETLTAAFA IP  SFP VPGG+VIEI
Sbjct: 1   MAGKQQVTKSSELSICDSYFENIQSRKKLPFSLQETLTAAFAEIPASSFPPVPGGKVIEI 60

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
           +AD+++ DAV+ILSECNI++APVK  DA  S DW++RYLGI+DYSAI+LWVLE+AELAA 
Sbjct: 61  LADSSVADAVRILSECNIMAAPVKKVDAGDSLDWRDRYLGIIDYSAIVLWVLESAELAAV 120

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A +  +A AAG+GTG VGALGA+ALG+TGP AVAGLT AA GAAV GG+AAEKGAGKDA 
Sbjct: 121 ALAATSAAAAGIGTGAVGALGAVALGLTGPVAVAGLTFAAVGAAVVGGVAAEKGAGKDAS 180

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAAD L +DFYKV+LQEEPFKSTTV SII SYRW+PFLPV T+ SMLS+LLLLSKYRLRN
Sbjct: 181 TAADNLGQDFYKVLLQEEPFKSTTVGSIITSYRWSPFLPVTTNSSMLSILLLLSKYRLRN 240

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+IEPG PDI+N+ITQSA+VQGLEGCKGRDWFD IA+QPIS++GLPF+S++EV+++QS 
Sbjct: 241 VPVIEPGKPDIQNFITQSAIVQGLEGCKGRDWFDCIAAQPISNVGLPFVSANEVVSVQSG 300

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
           ELILEAFK+MKDN IGG+PVVEG  KKI+GN+SIRDIRHLLLKPELFSNFR
Sbjct: 301 ELILEAFKKMKDNKIGGLPVVEGPNKKIIGNLSIRDIRHLLLKPELFSNFR 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558196|ref|XP_002520125.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223540617|gb|EEF42180.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 270/351 (76%), Positives = 311/351 (88%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           MAQ +E +  S L SCDAYFE IQSRKKLP SLQ+TLT AFARIPV SFP VP G+VIEI
Sbjct: 1   MAQTKEKRASSNLESCDAYFETIQSRKKLPLSLQDTLTTAFARIPVSSFPLVPRGKVIEI 60

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
           +ADT++ DAVKILSECNI +APVK  +A +SSDW+E+YLG++DYSAIILWVLE+AELAA 
Sbjct: 61  LADTSVADAVKILSECNITAAPVKNSEAGTSSDWREKYLGMIDYSAIILWVLESAELAAV 120

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A S   ATAAGVG G VGALGA+ALG+TGPAA+AGLT AA GAAV GG+AA+KG GKDAP
Sbjct: 121 ALSASRATAAGVGAGAVGALGAVALGITGPAAIAGLTAAAVGAAVVGGVAADKGMGKDAP 180

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAA  L +DFYKVILQEEPFKSTTVRS++KSYRWAPFL VATD SMLSVLLLLSKYRLRN
Sbjct: 181 TAASNLGKDFYKVILQEEPFKSTTVRSVLKSYRWAPFLAVATDSSMLSVLLLLSKYRLRN 240

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP++EPG  D++N+ITQSA+VQGLEGCKGRDWFD IA++PISD GLPFMS++EVI+I+SN
Sbjct: 241 VPVVEPGKTDVQNFITQSAIVQGLEGCKGRDWFDCIAARPISDFGLPFMSANEVISIRSN 300

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
           ELILEAFKRM+DN+IGG+PVVEG  K+IV N+SIRDIRHLLLKPELF+NFR
Sbjct: 301 ELILEAFKRMRDNHIGGLPVVEGANKRIVWNLSIRDIRHLLLKPELFNNFR 351

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500477|ref|XP_003519058.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Glycine max]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 267/351 (76%), Positives = 306/351 (87%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           MAQ +E +  + L  CD YFE IQSRKKLP SLQETLT AFA+IPV SFP VP G+VIEI
Sbjct: 1   MAQEQEYRTSTTLPKCDTYFETIQSRKKLPLSLQETLTDAFAKIPVSSFPAVPSGKVIEI 60

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
           +ADT I +AVKILSE NILSAPVK P+A +SSDW+ RYLGI+DYSAIILWVLE AELA  
Sbjct: 61  LADTPIGEAVKILSESNILSAPVKDPEAANSSDWRRRYLGIIDYSAIILWVLEGAELAHK 120

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A  VGTATAAGVG G  GA+GALALG+TGPAA+AGLT AAAGAA+AGG+AA++   KDAP
Sbjct: 121 ALLVGTATAAGVGAGAAGAMGALALGVTGPAAIAGLTAAAAGAALAGGIAADRVVAKDAP 180

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
            AAD L EDFYK+IL+EEPFKSTTVRSIIKSYRWAPF+PVA + +ML+VLLLLSKYRLRN
Sbjct: 181 QAADNLGEDFYKIILEEEPFKSTTVRSIIKSYRWAPFVPVARNSAMLTVLLLLSKYRLRN 240

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+IE G PDI N+ITQSAVVQGLEGCKGRDWFD IA + I+DLGLPFMS+DEVI+IQSN
Sbjct: 241 VPVIETGKPDIVNFITQSAVVQGLEGCKGRDWFDCIAEKRIADLGLPFMSTDEVISIQSN 300

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
           ELILEAFK+M+DN IGG+P+VEG +K+IVGN+SIRDIRHLLL+PELF+NFR
Sbjct: 301 ELILEAFKQMRDNKIGGLPIVEGPKKRIVGNLSIRDIRHLLLRPELFTNFR 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498190|ref|XP_003517936.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Glycine max]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 272/351 (77%), Positives = 308/351 (87%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           MAQ +E +  + L  CDAYFE IQSRKKLP SLQETLT AFA+IPV SFP VP G+VIEI
Sbjct: 1   MAQEQEFRTSTPLPKCDAYFETIQSRKKLPLSLQETLTDAFAKIPVSSFPAVPSGKVIEI 60

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
           +ADT + +AVKILSE NIL+APVK PDA +SSDW+ RYLGI+DYSAIILWVLE AELA A
Sbjct: 61  LADTPVGEAVKILSESNILAAPVKDPDASNSSDWRSRYLGIIDYSAIILWVLEGAELAQA 120

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A   GTATAAGVG G  GALGALALG+TGPAA+AGLT AAAGAA+AGG+AA+K   KDAP
Sbjct: 121 ALLAGTATAAGVGAGAAGALGALALGLTGPAAIAGLTTAAAGAALAGGVAADKVMAKDAP 180

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
            AAD L EDFYK+IL+EEPFKSTTVRSIIKSYRWAPF+PVA + +ML+VLLLLSKYRLRN
Sbjct: 181 QAADNLGEDFYKIILEEEPFKSTTVRSIIKSYRWAPFVPVARNSAMLTVLLLLSKYRLRN 240

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+IEPG PDI N+ITQSAVVQGLEGCKGRDWFD IA + ISDLGLPFMS+DEVI+IQSN
Sbjct: 241 VPVIEPGRPDIVNFITQSAVVQGLEGCKGRDWFDCIAEKCISDLGLPFMSTDEVISIQSN 300

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
           ELILEAFK+MKDN IGG+PV+EG +K+IVGN+SIRDIRHLLL+PELF+NFR
Sbjct: 301 ELILEAFKQMKDNRIGGLPVIEGPKKRIVGNLSIRDIRHLLLRPELFTNFR 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145327199|ref|NP_001077801.1| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana] gi|332196856|gb|AEE34977.1| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 262/351 (74%), Positives = 304/351 (86%), Gaps = 1/351 (0%)

Query: 2   AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           ++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGRVIEI
Sbjct: 33  SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 92

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
            A+T + +AVKILS+  ILSAPV   D  SS DW+ERYLGI+DYS+IILWVLE+AELAA 
Sbjct: 93  QAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 152

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A S  +ATAAGVG G VGALG  ALGMTGP A AGL  AA GAAVAGG+AAE+G GKDAP
Sbjct: 153 ALSATSATAAGVGAGAVGALGVAALGMTGPVAAAGLAAAAVGAAVAGGVAAERGIGKDAP 212

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAAD+L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 213 TAADKLGKDFYEVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 272

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+I+ G PDIKNY+TQSAVV GLEGCKGRDWFD I++ PISDLGLPFMS +EVI+I+S 
Sbjct: 273 VPVIKTGEPDIKNYVTQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEVISIESE 332

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
           ELILEAFKRM+DNNIGG+PVVEG  KKIVGN+S+RDIR+LLL+PE+FSNFR
Sbjct: 333 ELILEAFKRMRDNNIGGLPVVEGLNKKIVGNISMRDIRYLLLQPEVFSNFR 383

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42563087|ref|NP_564975.2| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana] gi|75262290|sp|Q9CAR3.1|KINGL_ARATH RecName: Full=SNF1-related protein kinase regulatory subunit gamma-1-like; AltName: Full=AKIN subunit gamma-1-like; AltName: Full=CBS domain-containing protein CBSCBS2 gi|12325233|gb|AAG52563.1|AC010675_11 hypothetical protein; 77242-78931 [Arabidopsis thaliana] gi|190684768|gb|ACE82595.1| At1g69800 [Arabidopsis thaliana] gi|222424344|dbj|BAH20128.1| AT1G69800 [Arabidopsis thaliana] gi|332196855|gb|AEE34976.1| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 262/351 (74%), Positives = 304/351 (86%), Gaps = 1/351 (0%)

Query: 2   AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           ++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGRVIEI
Sbjct: 4   SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 63

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
            A+T + +AVKILS+  ILSAPV   D  SS DW+ERYLGI+DYS+IILWVLE+AELAA 
Sbjct: 64  QAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 123

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A S  +ATAAGVG G VGALG  ALGMTGP A AGL  AA GAAVAGG+AAE+G GKDAP
Sbjct: 124 ALSATSATAAGVGAGAVGALGVAALGMTGPVAAAGLAAAAVGAAVAGGVAAERGIGKDAP 183

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAAD+L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 184 TAADKLGKDFYEVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 243

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+I+ G PDIKNY+TQSAVV GLEGCKGRDWFD I++ PISDLGLPFMS +EVI+I+S 
Sbjct: 244 VPVIKTGEPDIKNYVTQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEVISIESE 303

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
           ELILEAFKRM+DNNIGG+PVVEG  KKIVGN+S+RDIR+LLL+PE+FSNFR
Sbjct: 304 ELILEAFKRMRDNNIGGLPVVEGLNKKIVGNISMRDIRYLLLQPEVFSNFR 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841713|ref|XP_002888738.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297334579|gb|EFH64997.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 260/351 (74%), Positives = 303/351 (86%), Gaps = 1/351 (0%)

Query: 2   AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           ++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGRVIEI
Sbjct: 4   SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 63

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
            A+T + +AVKILS+  ILSAPV   D  SS DW+ERYLGI+DYS+IILWVLE+AELAA 
Sbjct: 64  PAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 123

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A S  +ATAAGVG G VGALG  ALG+TGP AVAGL  AA GAAVAGG+AA++G GKDAP
Sbjct: 124 ALSATSATAAGVGAGAVGALGVAALGVTGPVAVAGLAAAAVGAAVAGGVAADRGIGKDAP 183

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAAD L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 184 TAADNLGKDFYQVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 243

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+I+ G PDIKNYITQSAVV GLEGCKGRDWFD I++  ISDLGLPFMS +EVI+I+S 
Sbjct: 244 VPVIKSGEPDIKNYITQSAVVHGLEGCKGRDWFDHISALSISDLGLPFMSPNEVISIESE 303

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
           ELILEAFKRM+DNNIGG+PV+EG  KKIVGN+S+RDIR+LLL+PE+FSNFR
Sbjct: 304 ELILEAFKRMRDNNIGGLPVIEGPNKKIVGNISMRDIRYLLLQPEVFSNFR 354

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434819|ref|XP_004135193.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis sativus] gi|449478452|ref|XP_004155322.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis sativus]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 270/351 (76%), Positives = 305/351 (86%), Gaps = 1/351 (0%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
           M Q +E K  S LS+C++YFE IQS KKLP  LQETL  AF+RIPV SFP VPGGRVIEI
Sbjct: 1   MEQGKEVK-YSALSNCESYFERIQSTKKLPKYLQETLNDAFSRIPVSSFPGVPGGRVIEI 59

Query: 61  MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
            ADTTI +AVKILSECNILSAPV  P+A ++ +W+ERY+GIVDYSAIILWVLE+AELAAA
Sbjct: 60  PADTTIANAVKILSECNILSAPVVNPNAKANMNWRERYIGIVDYSAIILWVLESAELAAA 119

Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
           A S G+ATA GVG G VGALGALALG TGP AVAG+  AA GAAVAGG+A +KG GKDAP
Sbjct: 120 ALSAGSATAVGVGAGAVGALGALALGATGPIAVAGIAAAAVGAAVAGGVAVDKGIGKDAP 179

Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
           TAAD L EDFYKV+LQEEPFKSTTV  I+KSYRWAPFLPV  D+SML VLLLLSKYRLRN
Sbjct: 180 TAADNLGEDFYKVLLQEEPFKSTTVEMILKSYRWAPFLPVTLDNSMLCVLLLLSKYRLRN 239

Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           VP+IE G P+IKNYITQSAVVQGLE CKGRDWFD IA++PISDLGLPF+S  EVI+IQSN
Sbjct: 240 VPVIESGKPEIKNYITQSAVVQGLERCKGRDWFDCIAARPISDLGLPFVSCKEVISIQSN 299

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
           ELILEAFK+M++N+IGG+PVVEG +K+IVGN+SIRDIR+LLLKPELFSNFR
Sbjct: 300 ELILEAFKQMRENHIGGLPVVEGPKKRIVGNISIRDIRYLLLKPELFSNFR 350

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2114475	424	KING1 "AT3G48530" [Arabidopsis	0.464	0.384	0.392	2.3e-50
DICTYBASE|DDB_G0275177	304	sigI "CBS (cystathionine-beta-	0.299	0.345	0.284	1.1e-05
DICTYBASE|DDB_G0288201	313	DDB_G0288201 [Dictyostelium di	0.410	0.460	0.222	1.6e-05
DICTYBASE|DDB_G0278953	359	DDB_G0278953 "CBS (cystathioni	0.438	0.428	0.224	0.00027
UNIPROTKB|Q48IU0	146	PSPPH_2494 "CBS domain protein	0.165	0.397	0.409	0.00056
TAIR|locus:4515102654	193	AT1G47271 "AT1G47271" [Arabido	0.370	0.673	0.229	0.00085

TAIR|locus:2114475 KING1 "AT3G48530" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
 Identities = 64/163 (39%), Positives = 105/163 (64%)

Query:   189 DFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDXXXXXXXXXXKYRLRNVPIIEPGT 248
             +F++V+   E +K+T VR I  ++RWAPFL +  ++          KY+++++P+++ G 
Sbjct:   163 NFFEVLTSSELYKNTKVRDISGTFRWAPFLALQKENSFLTMLLLLSKYKMKSIPVVDLGV 222

Query:   249 PDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFK 308
               I+N ITQS V+  L  C G  WF+    + +S++GLP MS D +I I  +E +L+AFK
Sbjct:   223 AKIENIITQSGVIHMLAECAGLLWFEDWGIKTLSEVGLPIMSKDHIIKIYEDEPVLQAFK 282

Query:   309 RMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
              M+   IGGIPV+E   +K VGN+S+RD++ LL  PE++ ++R
Sbjct:   283 LMRRKRIGGIPVIERNSEKPVGNISLRDVQFLLTAPEIYHDYR 325

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009505 "plant-type cell wall" evidence=IDA

DICTYBASE|DDB_G0275177 sigI "CBS (cystathionine-beta-synthase) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 112 (44.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 33/116 (28%), Positives = 65/116 (56%)

Query:   235 KYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEG-CKGRDWFDIIASQPISDLGLPFMSSD 292
             K+ +  +PII+  GT  + + +TQS VV+ ++   +  +  D    Q + + G     + 
Sbjct:   126 KWGVHRLPIIDSEGT--LISILTQSRVVEYIQNHIQNINGLDKAIGQ-LKEFG-----TS 177

Query:   293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 348
              VI+I+ + ++++AF+ M +N I  +PVV  Q   ++GN+S+ D++ +     LFS
Sbjct:   178 SVISIKQDRMVIDAFRLMHENGISAVPVVN-QIGILIGNISVSDMKMVGYDGTLFS 232

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0288201 DDB_G0288201 [Dictyostelium discoideum (taxid:44689)]

 Score = 106 (42.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
 Identities = 34/153 (22%), Positives = 72/153 (47%)

Query:   195 LQEEP-FKSTTVRSIIKSYRWAPFLPVATDDXXXXXXXXXXKYRLRNVPIIEPGTPDIKN 253
             LQ+   FK + V  I  S +  PF+ V ++           K  +R V ++     ++ N
Sbjct:    90 LQDRKLFKKSIVADICDSSKRDPFIVVDSETMLDNVAGLMVKNNIRRVAVLNQ-KGELCN 148

Query:   254 YITQSAVVQGLEGCKGRDW-FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD 312
              IT S +++ +      D   + +    I ++ +    + +V++I S++   +AFK +  
Sbjct:   149 IITNSRIIECISHLFAMDKELEKLGKMTIKEMKI---GTSDVVSISSDKKAWDAFKLISK 205

Query:   313 NNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345
               + G+ V + Q K ++G +   D++  L+KP+
Sbjct:   206 MGVSGVGVTDSQGK-LIGAIGDSDLK--LIKPK 235

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0278953 DDB_G0278953 "CBS (cystathionine-beta-synthase) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 116 (45.9 bits), Expect = 0.00027, P = 0.00027
 Identities = 38/169 (22%), Positives = 85/169 (50%)

Query:   186 LHEDFYKVILQEEPFKSTTVRSIIKSYRWAP--FLPVATDDXXXXXXXXXXKY-RLRNVP 242
             + +DF+K+  +EE FK+ TV  +++        F P+  +           +   +  +P
Sbjct:   123 IEQDFWKLSEEEEKFKTLTVNDVMRYPHTKDNRFSPITQNYSLFSAFEIFARDPNVHRIP 182

Query:   243 IIEP-GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE---VITIQ 298
             I++      + + +TQS +V+ +      D   ++ S+   DL +  MS  +   V+T++
Sbjct:   183 ILDNMANRHLVSILTQSQLVKYVY-----DNMSLLGSK--KDLIVKNMSGIQMGSVVTVK 235

Query:   299 SNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 347
             S+ L +EAFK +++ +I G+ V+   + +++  +S+RD++ +      F
Sbjct:   236 SSILAIEAFKILEEKDINGVAVLN-DKGELIDTLSVRDLKAIATDGSFF 283

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q48IU0 PSPPH_2494 "CBS domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 101 (40.6 bits), Expect = 0.00056, P = 0.00056
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query:   284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLL 342
             L L  + + +V TI  ++++L+A + M + NIG +PVVEG    +VG VS RD  R ++L
Sbjct:     8 LKLKDLQNQQVHTIGPDQMVLDALRLMAEKNIGALPVVEGNV--VVGVVSERDYARKVIL 65

Query:   343 K 343
             K
Sbjct:    66 K 66

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515102654 AT1G47271 "AT1G47271" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 0.00085, P = 0.00085
 Identities = 33/144 (22%), Positives = 70/144 (48%)

Query:   197 EEPFKSTTVRSII--KSYRWAPFLPVATDDXXXXXXXXXXKYRLRNVPIIEPGTPD-IKN 253
             E+  ++ TV  ++  K      ++   T+D          K+ + ++ ++EPG    I  
Sbjct:    37 EKGLENLTVADVLSTKDTDIDTWISCRTNDTVSDAVKNMAKHNIGSLVVLEPGDQQYIAG 96

Query:   254 YITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN 313
              +T+   ++ + G  GR       S  ++ +G       +++T+ S   I++A + M +N
Sbjct:    97 IVTERDYMKKIIGA-GR-------SSKLTKVGEVMTDESKLVTVSSGTNIIKAMQLMSEN 148

Query:   314 NIGGIPVVEGQQKKIVGNVSIRDI 337
             +I  +PV++G   KIVG +S+ D+
Sbjct:   149 HIRHVPVIDG---KIVGLISMVDV 169


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      351       278   0.00081  115 3  11 22  0.37    34
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  197 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.96u 0.10s 20.06t   Elapsed:  00:00:01
  Total cpu time:  19.96u 0.10s 20.06t   Elapsed:  00:00:01
  Start:  Thu May  9 23:33:10 2013   End:  Thu May  9 23:33:11 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CAR3	KINGL_ARATH	No assigned EC number	0.7464	0.9971	0.7829	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	2e-18
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	2e-14
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-08
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-08
pfam00571	57	pfam00571, CBS, CBS domain	7e-08
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-07
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	2e-07
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	3e-07
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	6e-07
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-06
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	2e-06
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	3e-06
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	8e-06
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	9e-06
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	1e-05
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	2e-05
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	2e-05
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	2e-05
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	3e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	7e-05
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	1e-04
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	1e-04
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	1e-04
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	2e-04
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	2e-04
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	2e-04
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	2e-04
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	3e-04
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	3e-04
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	4e-04
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	4e-04
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	5e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	5e-04
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	7e-04
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	8e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	8e-04
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	8e-04
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	9e-04
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	0.001
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	0.002
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	0.002
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	0.002
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	0.002
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	0.003
PRK13875	440	PRK13875, PRK13875, conjugal transfer protein TrbL	0.003
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	0.004

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 79.6 bits (197), Expect = 2e-18
 Identities = 26/60 (43%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
            +V++I S+E +L+AFK M+ NNI G+PVV+  + K++GN+S  D++ LLL P+    +R
Sbjct: 1   SKVVSIDSDERVLDAFKLMRKNNISGLPVVDE-KGKLIGNISASDLKGLLLSPDDLLLYR 59

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 5/126 (3%)

Query: 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-FD 274
           PF+PV +  S+   + +L    +  V + E  + ++   ++Q  +V+ L          D
Sbjct: 2   PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLD 61

Query: 275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSI 334
            +   P+ DL +    + +VI+I  ++ +++A   M +  I  + VV   Q  ++GN+S+
Sbjct: 62  PLYPIPLRDLTIG---TSDVISINGDQPLIDALHLMHNEGISSVAVV-DNQGNLIGNISV 117

Query: 335 RDIRHL 340
            D+R L
Sbjct: 118 TDVRLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 19/115 (16%)

Query: 232 LLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-FDIIAS--------QPIS 282
           ++ +   R +P+++ GT  +   IT + +++ L    G    F+ I +        +P+ 
Sbjct: 18  IMVRNGFRRLPVVDEGTGKLVGIITATDILKYL----GGGEKFNKIKTGNGLEAINEPVR 73

Query: 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
            +    M+ + VITI  ++ I +A + M +  +GG+PVV+    K+VG V+ RD+
Sbjct: 74  SI----MTRN-VITITPDDSIKDAAELMLEKRVGGLPVVDDDG-KLVGIVTERDL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 25/122 (20%), Positives = 58/122 (47%), Gaps = 13/122 (10%)

Query: 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI 275
             + V+ DD++   L L+ ++ +  +P+++     +   +T+  +++ L           
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVD-DDGRLVGIVTERDLLRALAEGGLDP---- 56

Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
                + D     M+ D V+T+  +  + EA + M ++ I  +PVV+ +  ++VG V+  
Sbjct: 57  --LVTVGD----VMTRD-VVTVSPDTSLEEAAELMLEHGIRRLPVVDDEG-RLVGIVTRS 108

Query: 336 DI 337
           DI
Sbjct: 109 DI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 48.3 bits (116), Expect = 7e-08
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343
            M+ D V+T+  +  + EA + M++N I  +PVV  +  K+VG V++RD+   LL+
Sbjct: 4   IMTPD-VVTVPPDTSLEEALELMRENGISRLPVV-DEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 346
            +V+T+  ++ + EA + M ++ I G+PVV+    ++VG V+ RD+   L +  L
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDG-RLVGIVTERDLLRALAEGGL 54

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342
           +V+T+  +  + EA + +++N I  +PVV+ +  ++VG V+ RDI   L 
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEG-RLVGIVTRRDIIKALA 49

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 47.8 bits (115), Expect = 3e-07
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
           + IT+  +  + EA + M +  I G+PVV+    K+VG V+ RD+R
Sbjct: 3   DPITVSPDATVAEALELMAEYGISGLPVVDD-DGKLVGIVTNRDLR 47

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 17/120 (14%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPD-IKNYITQSAVVQGLEGCKGRDWFDIIAS 278
           V  D S+   LLL+S+  +  VP+++ G    I   IT+  ++             + A 
Sbjct: 12  VKPDTSVRDALLLMSENGVSAVPVVDDGKLVGI---ITERDIL-----------RALAAG 57

Query: 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-NIGGIPVVEGQQKKIVGNVSIRDI 337
                     M+   V+T+  +  + EA + M +   I  +PVV+    K+VG +++ DI
Sbjct: 58  GKRLLPVKEVMTKP-VVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116

Length = 117

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
            +VIT++ +  + EA K M + NIG + VV+    ++VG  S RDI
Sbjct: 1   RDVITVRPDATVAEAAKLMAEKNIGAVVVVDD-GGRLVGIFSERDI 45

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
           +V+TI     I EA + M+++ I  +PVV+ +  ++VG V+ RD+R
Sbjct: 2   DVVTITPTTTIAEALELMREHKIRHLPVVDEEG-RLVGIVTDRDLR 46

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345
            +VIT++ +  + +A   M +N +  +PVV+    K+VG ++ RDI   L    
Sbjct: 7   KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGG 58

Length = 117

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.0 bits (105), Expect = 8e-06
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 13/118 (11%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279
           V  D ++     L+++  +  V +++ G   +    ++  +V+ +   +G          
Sbjct: 6   VRPDATVAEAAKLMAEKNIGAVVVVDDGG-RLVGIFSERDIVRKVAL-RGAS----ALDT 59

Query: 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           P+S++    M+ + VIT+  ++ + EA   M +     +PVV+G   K+VG VSI D+
Sbjct: 60  PVSEI----MTRN-VITVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 44.0 bits (105), Expect = 9e-06
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
             P+S++    M++   ITI  +  + EA   M +  I  +PVV+    ++VG +S  D+
Sbjct: 56  DTPVSEV----MTAP-PITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDL 108

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           + ++E+IT+  N+ +++A K M + NI G+PVV+     IVG ++  DI
Sbjct: 86  IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDND--NIVGVITKTDI 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 12/125 (9%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQS----AVVQGLEGCKGRDWFDI 275
           V  D S++  L L+ +  +R +P+++ G   +   +T      A           + + +
Sbjct: 6   VTPDTSLMEALKLMKENSIRRLPVVDRGK--LVGIVTDRDLKLASPSKATTLDIWELYYL 63

Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
           ++   +SD     M+ D  IT+  +  + EA + M +  I G+PVV+  Q ++VG ++  
Sbjct: 64  LSKIKVSD----IMTRD-PITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITES 117

Query: 336 DIRHL 340
           D+   
Sbjct: 118 DLFRA 122

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 11/51 (21%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343
           +V+++  ++ + +A +RM++  +  +PVV+    ++VG++   D+   L++
Sbjct: 2   DVVSVAPDDTVSQAIERMREYGVSQLPVVDDG--RVVGSIDESDLLDALIE 50

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 19/125 (15%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPG-------TPDIKNYITQSAVVQGLEGCKGRDW 272
           V+ DD +     L+  + +  +P+IE G         DI + +            + R  
Sbjct: 6   VSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFR-----PLVRDRHQ 60

Query: 273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNV 332
              I + P+SD+    M+   VITI+ +  + +    M +NNIGG+PVV+    K+VG V
Sbjct: 61  ERRIRNLPVSDI----MTRP-VITIEPDTSVSDVASLMLENNIGGLPVVD--DGKLVGIV 113

Query: 333 SIRDI 337
           +  DI
Sbjct: 114 TRTDI 118

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 2/45 (4%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           +V+T+  ++ I EA + M+++++G +PV E  +  +VG V+ RDI
Sbjct: 2   DVVTVSPDDTIREAARLMREHDVGALPVCENDR--LVGIVTDRDI 44

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
            MS+  +ITI  N  + EA K M  + I  +PVV+    ++VG V+  DI
Sbjct: 63  VMST-PLITIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDI 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
            VIT+  ++ +  A + M D++I  +PV+EG   K+VG V+ +DI
Sbjct: 2   PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDI 44

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 16/125 (12%)

Query: 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI 275
           P + +  + ++     L + + +   P+++ G   +   +T S +   +           
Sbjct: 2   PLITLNPNATLREAARLFNTHHIHGAPVVDDG--KLVGIVTLSDIAHAI--------ARG 51

Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
           +    + D+    M+ D VITI  +E + +A + M  +N+G + V +  + + VG ++  
Sbjct: 52  LELAKVKDV----MTKD-VITIDEDEQLYDAIRLMNKHNVGRLIVTD-DEGRPVGIITRT 105

Query: 336 DIRHL 340
           DI   
Sbjct: 106 DILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345
            IT  +++ I +A + +++N I G PV++G   K+VG VS  DI  LL+  +
Sbjct: 3   PITCNADDTISDAARLLRENKISGAPVLDGG--KLVGIVSESDILKLLVTHD 52

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 20/135 (14%)

Query: 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262
             V++++        + V  DD++     L  +  +R  P+++     I   IT S + +
Sbjct: 172 EKVKNLMSK----KLITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAK 225

Query: 263 GLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE 322
            +                +SD          VITI  +E I +A + M  NN+G + V +
Sbjct: 226 AIANGN--------LDAKVSDYMRK-----NVITINEDEDIYDAIRLMNKNNVGRLLVTD 272

Query: 323 GQQKKIVGNVSIRDI 337
               K VG ++  DI
Sbjct: 273 -SNGKPVGIITRTDI 286

Length = 294

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 15/100 (15%)

Query: 244 IEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELI 303
           +E G  D +   T   +++ LE  +       I ++ I       M S  V+++  ++ I
Sbjct: 38  LEAGKVDPR-LSTVKRILEALEEAEK----TRITAKTI-------MHSP-VVSVSPDDSI 84

Query: 304 LEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343
            +    M+D  I  +PV+E    K+VG+++  DI   LL+
Sbjct: 85  SDVVNLMRDKGISQLPVIEED--KVVGSITENDIVRALLE 122

Length = 187

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           S  V+TI  +  I EA K M + NI  +PVV+    ++VG V+  DI
Sbjct: 1   SRPVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDI 46

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 20/110 (18%)

Query: 228 SVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLP 287
            VL LL +Y++  VP+++    ++   IT+                D++ +     L L 
Sbjct: 14  DVLELLKEYKVSGVPVVKKSG-ELVGIITRK---------------DLLRNPEEEQLAL- 56

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
            M+ D   T+  ++ + EA K M +NNI  +PVV+    K+VG V++ DI
Sbjct: 57  LMTRD-PPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADI 103

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           M+S  VITI +N+ I +A   M +NNI  +PV++  + K+ G V+  DI
Sbjct: 64  MNSP-VITIDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 20/128 (15%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIK--NYITQSAVVQGLEGCKGRDW-FDII 276
           ++ + ++  VL L+ +  +  +P++E G    K    IT             RD  F   
Sbjct: 93  ISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIIT------------KRDIRFVKD 140

Query: 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRD 336
             +P+S++    M+ +EVIT+     + EA K + ++ I  +PVV+    ++VG ++++D
Sbjct: 141 KGKPVSEV----MTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNG-ELVGLITMKD 195

Query: 337 IRHLLLKP 344
           I      P
Sbjct: 196 IVKRRKFP 203

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341
            +IT+  N  + EA +    ++I G PVV+    K+VG V++ DI H +
Sbjct: 2   PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAI 48

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 340
           VIT   +E I  A ++M+ +NI  +PVV+  + +++G ++  DI  L
Sbjct: 65  VITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDISKL 110

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           +VIT+   + + EA   M+++ IG +PVVE    ++VG ++  D+
Sbjct: 76  DVITVHPLDTVEEAALLMREHRIGCLPVVEDG--RLVGIITETDL 118

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 16/113 (14%)

Query: 239 RNVPIIEPGTP--DIKNYITQS-----AVVQGLEGCKG----RDWFDIIASQPISDLGLP 287
           R+V  I   TP  ++ + I  S      VV       G     D  +I+    + DL + 
Sbjct: 1   RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYDL-VV 59

Query: 288 ---FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
               M+    + +   + + +A K+ +D++   +PVV+    K++G +S  D+
Sbjct: 60  ASDIMTKP-PVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDL 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.6 bits (91), Expect = 7e-04
 Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 27/125 (21%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTP-------DIKNYITQSAVVQGLEGCKGRDW 272
           V+ DD++     L+ ++ +  +P+ E           DI        VV+ +   +GRD 
Sbjct: 6   VSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDI--------VVRAV--AEGRD- 54

Query: 273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNV 332
                +  + D+    M+   V+T+  ++ + EA + M+++ +  +PVV+    ++VG V
Sbjct: 55  ---PDTTTVGDV----MTRG-VVTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIV 105

Query: 333 SIRDI 337
           S+ D+
Sbjct: 106 SLGDL 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 271 DWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVG 330
           D  D+   +   +  +  + S +V  +   + I EA   M++  IG +PVV+    K++G
Sbjct: 44  DILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVD--DNKLIG 101

Query: 331 NVSIRDIR 338
            V  +DI 
Sbjct: 102 VVRTKDIL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           + + +T   +E + +A KRM + +IG +PVV+    ++VG VS  D+
Sbjct: 63  TRDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDL 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 40.6 bits (96), Expect = 8e-04
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
           + +T+  +  + EA   M    I G+PVV+    K+VG ++ RD+R
Sbjct: 96  DPVTVTPDTTLAEALALMARYGISGVPVVDENG-KLVGIITNRDVR 140

Length = 486

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.0 bits (89), Expect = 9e-04
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           V+T+  +  I EA K M + N+G + VV+   ++ +G V+ RDI
Sbjct: 3   VVTVDPDTSIREAAKLMAEENVGSVVVVDP-DERPIGIVTERDI 45

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           M+ D  IT+  +  + EA K + +N+I  +PVV+    +++G ++ +D+
Sbjct: 73  MTRD-PITVSPDTPVDEASKLLLENSISCLPVVDENG-QLIGIITWKDL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%)

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
            IT+  +  ++EA K MK+N+I  +PVV+    K+VG V+ RD++
Sbjct: 3   PITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLK 45

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           +  D+ +T+  +  + EA+  M +NN+  +PVV+ ++ K++G VS+ D+
Sbjct: 73  LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVD-EEGKLLGLVSLSDL 120

Length = 546

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343
           + +  +  IL+A +++ D N   I +V  +  +++G V+  DIR  LLK
Sbjct: 5   LLVSPDASILDALRKI-DKNALRIVLVVDENGRLLGTVTDGDIRRALLK 52

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 12/122 (9%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQ----SAVVQGLEGCKGRDWFDI 275
           ++ DDS+     L+ ++R+R++P++      +   +TQ     A +  L    G +    
Sbjct: 6   LSEDDSLADAEELMREHRIRHLPVVN-EDGKLVGLLTQRDLLRAALSSLSDN-GEESLTK 63

Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
               P++++    M +D V+T+  +  + EA + M +N IG +PVV+  +  +VG ++  
Sbjct: 64  ERDVPVAEV----MKTD-VLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRS 117

Query: 336 DI 337
           D 
Sbjct: 118 DF 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQK-KIVGNVSIRD 336
             P+ D     MSS  VIT   N+ + +A  RM +N+   + VV      K+VG ++ +D
Sbjct: 70  DLPVYDA----MSS-PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKD 124

Query: 337 I 337
           +
Sbjct: 125 V 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 28/67 (41%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 118 AAAAFSVGTATAAGVGTGTVGALGA-LALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAG 176
           A AA  VGT  AAG G     A GA LA G    AA      A  GAA AGG ++   AG
Sbjct: 271 AGAA--VGTGLAAG-GAAVAAAAGAGLAAGGGAAAAGGAAAAARGGAAAAGGASSAYSAG 327

Query: 177 KDAPTAA 183
               + A
Sbjct: 328 AAGGSGA 334

Length = 440

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           +++T+  +E + EA K M+ NNI    VV+ +  ++VG +SIRD+
Sbjct: 66  DLVTVDPDEPVAEAAKLMRKNNIRHHLVVD-KGGELVGVISIRDL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
COG2524	294	Predicted transcriptional regulator, contains C-te	99.76
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.74
COG2524	294	Predicted transcriptional regulator, contains C-te	99.71
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.67
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.65
COG3620	187	Predicted transcriptional regulator with C-termina	99.64
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.59
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.57
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.57
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.56
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.56
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.56
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.56
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.55
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.54
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.53
COG3620	187	Predicted transcriptional regulator with C-termina	99.53
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.53
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.52
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.52
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.52
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.51
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.51
COG2905	610	Predicted signal-transduction protein containing c	99.5
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.5
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.5
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.5
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.49
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.49
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.49
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.49
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.48
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.48
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.48
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.48
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.48
COG2905	610	Predicted signal-transduction protein containing c	99.48
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.48
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.48
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.47
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.47
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.47
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.47
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.47
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.46
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.46
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.46
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.46
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.46
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.45
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.45
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.45
PRK11573	413	hypothetical protein; Provisional	99.44
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.44
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.44
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.44
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.44
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.44
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.43
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.43
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.43
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.43
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.43
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.42
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.42
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.42
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.42
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.42
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.41
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.41
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.41
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.41
COG4109	432	Predicted transcriptional regulator containing CBS	99.41
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.41
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.41
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.4
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.4
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.4
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.4
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.4
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.39
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.39
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.39
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.38
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.38
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.38
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.38
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.38
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.37
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.37
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.37
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.37
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.37
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.37
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.36
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.36
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.36
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.36
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.35
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.35
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.35
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.35
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.35
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.35
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.35
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.35
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.35
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.35
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.35
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.35
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.35
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.34
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.34
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.34
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.34
PRK11573	413	hypothetical protein; Provisional	99.34
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.34
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.34
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.33
COG0517	117	FOG: CBS domain [General function prediction only]	99.33
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.33
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.33
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.33
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.33
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.32
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.32
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.32
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.32
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.32
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.32
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.31
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.31
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.31
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.31
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.31
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.3
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.3
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.3
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.29
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.29
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.29
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.29
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.29
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.28
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.28
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.28
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.28
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.27
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.27
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.26
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.26
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.26
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.26
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.26
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.26
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.25
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.24
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.24
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.24
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.24
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.24
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.23
COG0517	117	FOG: CBS domain [General function prediction only]	99.22
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.21
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.2
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.18
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.18
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.18
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.17
COG4109	432	Predicted transcriptional regulator containing CBS	99.17
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.16
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.16
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.14
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.13
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.13
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.12
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.1
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.1
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.07
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.02
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.01
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.96
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.91
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.84
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.82
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.79
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.71
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.55
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.54
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.44
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.3
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.28
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.23
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.21
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.91
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.91
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.83
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.81
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.75
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.53
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.41
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.91
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	95.32
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	94.65
KOG2118	498	consensus Predicted membrane protein, contains two	93.82
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	93.68
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	91.12
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	90.61
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	86.03
KOG2118	498	consensus Predicted membrane protein, contains two	82.33

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.76  E-value=8.4e-18  Score=148.57  Aligned_cols=125  Identities=25%  Similarity=0.429  Sum_probs=115.9

Q ss_pred             CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713          199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (351)
Q Consensus       199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~  278 (351)
                      ..+..+|+++|+    ++++++.+++++.|+..+|.+++++..||+|++  +++|++|.+|+..+++++.        .+
T Consensus       168 siPk~~V~~~~s----~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g~--------~~  233 (294)
T COG2524         168 SIPKEKVKNLMS----KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANGN--------LD  233 (294)
T ss_pred             ecCcchhhhhcc----CCceEecCCccHHHHHHHHHHcCccCCceecCC--ceEEEEEHHHHHHHHHcCC--------cc
Confidence            366789999999    669999999999999999999999999999985  9999999999999998873        46


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .++++    +|. ++++++++|+.+.||+++|..+++.+|.|+|. +|+++|+||.+||+..+..
T Consensus       234 ~kV~~----~M~-k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         234 AKVSD----YMR-KNVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             ccHHH----Hhc-cCCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhhc
Confidence            78999    797 99999999999999999999999999999998 8999999999999998754

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.74  E-value=1.7e-16  Score=153.02  Aligned_cols=234  Identities=23%  Similarity=0.329  Sum_probs=185.7

Q ss_pred             HHHHHhcc-CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHh
Q 018713           36 TLTAAFAR-IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET  114 (351)
Q Consensus        36 ~~~~~~~~-~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~  114 (351)
                      .+..++.. .++..++.  .++++.++...++.+|+..+..+.+++.||+|.+.       .++.|++++.|++..+...
T Consensus        58 ~~~~~~~~~~~~~~~p~--~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~-------~~~~g~~~~~d~i~~~~~~  128 (381)
T KOG1764|consen   58 TLSKFMKSHTCYDLLPT--SSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKK-------QQFVGMLTITDFITVLLRY  128 (381)
T ss_pred             HHHHHHhccCcccccCC--cceeEEeeCCCcHHHHHHHHHhhceeeeccccCcc-------ceeEEEEEHHHHHHHHHHh
Confidence            44455444 44444443  58899999999999999999999999999999774       3899999999999877666


Q ss_pred             hHHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHh
Q 018713          115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVI  194 (351)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l  194 (351)
                      ....                                                                   ...+....+
T Consensus       129 ~~~~-------------------------------------------------------------------~~~~~~~~~  141 (381)
T KOG1764|consen  129 YKSK-------------------------------------------------------------------SSLDNIEVL  141 (381)
T ss_pred             hccC-------------------------------------------------------------------CcHHHHhhh
Confidence            4320                                                                   011111222


Q ss_pred             hhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhh
Q 018713          195 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD  274 (351)
Q Consensus       195 ~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~  274 (351)
                      .........++..+.....++++..+.+..++.++...+.+++++++||.|.+.+.+..++|+..|++++.......++.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~  221 (381)
T KOG1764|consen  142 EDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLP  221 (381)
T ss_pred             hhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccH
Confidence            22233444555555554444666999999999999999999999999999955679999999999999998776544467


Q ss_pred             hhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCccccc
Q 018713          275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS  348 (351)
Q Consensus       275 ~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~~~~  348 (351)
                      .+...++.+++++.+  ..+..+..++++.+|+++|..++++.+||||. .|+.+|+++..|++....+..+..
T Consensus       222 ~~l~~s~~dl~ig~~--~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-~g~~v~~~s~~Dv~~l~~~~~~~~  292 (381)
T KOG1764|consen  222 SLLSKSLSDLGIGTW--SNIASISEDTPVIEALKIMSERRISALPVVDE-NGKKVGNYSRFDVIHLAREGTYNN  292 (381)
T ss_pred             HHhhCCHHHhCcchh--hhheeecCCCcHHHHHHHHHhcCcCcceEEcC-CCceecceehhhhhhhhhcCccCc
Confidence            788999999998744  57999999999999999999999999999999 888899999999999998887654

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.71  E-value=1.2e-16  Score=141.38  Aligned_cols=122  Identities=18%  Similarity=0.308  Sum_probs=106.7

Q ss_pred             ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713           42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA  121 (351)
Q Consensus        42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~  121 (351)
                      .+.++.++|.   ++++++.+++|+.+|.+.|.+++++++||+|.+         +++|+++..||...+.+        
T Consensus       170 Pk~~V~~~~s---~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d---------k~vGiit~~dI~~aia~--------  229 (294)
T COG2524         170 PKEKVKNLMS---KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD---------KIVGIITLSDIAKAIAN--------  229 (294)
T ss_pred             Ccchhhhhcc---CCceEecCCccHHHHHHHHHHcCccCCceecCC---------ceEEEEEHHHHHHHHHc--------
Confidence            4555666665   899999999999999999999999999999976         89999999998843311        


Q ss_pred             hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713          122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK  201 (351)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~  201 (351)
                                                                                                   ...
T Consensus       230 -----------------------------------------------------------------------------g~~  232 (294)
T COG2524         230 -----------------------------------------------------------------------------GNL  232 (294)
T ss_pred             -----------------------------------------------------------------------------CCc
Confidence                                                                                         134


Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      ..+|+++|+    ++++++..++.+.+|+++|.++++.++.|+|. +|+++|+||++||+..+.
T Consensus       233 ~~kV~~~M~----k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         233 DAKVSDYMR----KNVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIA  291 (294)
T ss_pred             cccHHHHhc----cCCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhh
Confidence            578999999    55999999999999999999999999999998 489999999999998874

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.67  E-value=6.1e-16  Score=139.22  Aligned_cols=136  Identities=20%  Similarity=0.357  Sum_probs=116.5

Q ss_pred             HHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713           36 TLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA  115 (351)
Q Consensus        36 ~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~  115 (351)
                      .+...+.+.++.++|+   ++++++++++|+.+|.+.|.+|+++.+||+|++.        +++|+|+..|+....    
T Consensus       237 a~~R~~~~LtcadIMS---rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~--------rl~GiVt~~dl~~~a----  301 (382)
T COG3448         237 ALRRRMGELTCADIMS---RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHR--------RLVGIVTQRDLLKHA----  301 (382)
T ss_pred             HHHHHhccccHHHhcC---ccceecCCcCChHHHHHHHHHcCccccccccccc--------ceeeeeeHHHHhhcc----
Confidence            4556677899999997   8999999999999999999999999999999875        899999999988321    


Q ss_pred             HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhh
Q 018713          116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL  195 (351)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~  195 (351)
                                                                                             .+..++.++
T Consensus       302 -----------------------------------------------------------------------~~~p~qrlr  310 (382)
T COG3448         302 -----------------------------------------------------------------------RPSPFQRLR  310 (382)
T ss_pred             -----------------------------------------------------------------------CcchHHHhh
Confidence                                                                                   011222222


Q ss_pred             hcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       196 ~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                         .....+++.+|+    .++.++.++++..+.+-.+.+.+.|++||+|.+ |+++|||||+|++..+.
T Consensus       311 ---~~~~~~vk~imt----~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~-g~lvGIvsQtDliaal~  372 (382)
T COG3448         311 ---FLRPPTVKGIMT----TPVVTVRPDTPAVELVPRLADEGLHALPVLDAA-GKLVGIVSQTDLIAALY  372 (382)
T ss_pred             ---ccCCCccccccc----CcceeecCCCcHHHHHHHhhcCCcceeeEEcCC-CcEEEEeeHHHHHHHHH
Confidence               356688999999    669999999999999999999999999999994 99999999999998874

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.65  E-value=9.1e-16  Score=138.11  Aligned_cols=133  Identities=20%  Similarity=0.361  Sum_probs=113.9

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      ....+..+||+++    ++++++++++.+|.++|++++++.+||+|+ +.+++|+|+++|+++...-.. ...++.+...
T Consensus       242 ~~~LtcadIMSrd----Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-~~rl~GiVt~~dl~~~a~~~p-~qrlr~~~~~  315 (382)
T COG3448         242 MGELTCADIMSRD----VVTVSTDTSIDHARKLLQEHRIKALPVLDE-HRRLVGIVTQRDLLKHARPSP-FQRLRFLRPP  315 (382)
T ss_pred             hccccHHHhcCcc----ceecCCcCChHHHHHHHHHcCccccccccc-ccceeeeeeHHHHhhccCcch-HHHhhccCCC
Confidence            4456889999955    999999999999999999999999999999 489999999999987553211 1123334566


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      +++.    +|+ .++.++.++++..+.+-+|.+.+.|++||+|+ .|+++||||.+|++..+...
T Consensus       316 ~vk~----imt-~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~r~  374 (382)
T COG3448         316 TVKG----IMT-TPVVTVRPDTPAVELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALYRN  374 (382)
T ss_pred             cccc----ccc-CcceeecCCCcHHHHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHHHH
Confidence            7777    696 89999999999999999999999999999999 99999999999999887543

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.64  E-value=2.5e-15  Score=123.78  Aligned_cols=140  Identities=23%  Similarity=0.352  Sum_probs=118.0

Q ss_pred             hhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713          184 DRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG  263 (351)
Q Consensus       184 ~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~  263 (351)
                      -++.+.+++.+.+.. ....+++.+|+    .|++.+++++++.++.++|.+++++.+||++++  +++|-||..+|.+.
T Consensus        47 lSt~k~Il~aL~e~e-~~~ita~~iM~----spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~--k~VGsItE~~iv~~  119 (187)
T COG3620          47 LSTVKRILEALEEAE-KTRITAKTIMH----SPVVSVSPDDSISDVVNLMRDKGISQLPVIEED--KVVGSITENDIVRA  119 (187)
T ss_pred             HHHHHHHHHHHHHhh-cceEeHhhhcc----CCeeEECchhhHHHHHHHHHHcCCccCceeeCC--eeeeeecHHHHHHH
Confidence            345677777776533 35678999999    779999999999999999999999999999874  99999999999999


Q ss_pred             hhcCCCCchhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          264 LEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       264 l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      +.++.     +.+....+.+    +|. .++++|++++++..+.++|..++  ++.|+++  |+++|+||+.||++++.+
T Consensus       120 ~le~~-----e~i~~~~vr~----vM~-e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e~--G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         120 LLEGM-----ESIRSLRVRE----VMG-EPFPTVSPDESLNVISQLLEEHP--AVLVVEN--GKVVGIITKADIMKLLAG  185 (187)
T ss_pred             Hhccc-----cchhhhhHHH----Hhc-CCCCcCCCCCCHHHHHHHHhhCC--eEEEEeC--CceEEEEeHHHHHHHHhc
Confidence            86542     2345667788    696 99999999999999999988775  5778865  999999999999999876


Q ss_pred             c
Q 018713          344 P  344 (351)
Q Consensus       344 ~  344 (351)
                      .
T Consensus       186 ~  186 (187)
T COG3620         186 T  186 (187)
T ss_pred             c
Confidence            4

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=3.1e-14  Score=115.10  Aligned_cols=116  Identities=16%  Similarity=0.253  Sum_probs=92.4

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc-c-ccCccCCCC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD-L-GLPFMSSDE  293 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~-L-~~~~m~~~~  293 (351)
                      ++.++++++++.++++.|.+++++++||+|+ +|+++|+++..|++.+...+.. ..    ...++.+ + ..+.|. .+
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~-~~----~~~~~~~~~~~~~~~~-~~   74 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAY-NN----LDLTVGEALERRSQDF-EG   74 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCcc-cc----ccCCHHHHHhhcccCC-CC
Confidence            5788999999999999999999999999988 4899999999999977643321 00    0111111 0 000233 56


Q ss_pred             ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..|+++
T Consensus        75 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~  119 (120)
T cd04641          75 VRTCSPDDCLRTIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQ  119 (120)
T ss_pred             CeEEcCCCcHHHHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhc
Confidence            789999999999999999999999999998 799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.57  E-value=3.8e-14  Score=113.11  Aligned_cols=108  Identities=11%  Similarity=0.222  Sum_probs=92.9

Q ss_pred             cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceE
Q 018713          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (351)
Q Consensus       217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~  296 (351)
                      +.++++++++.++++.|.+++.+.+||+|+ +++++|+|+..|+.+...+.        ....++.+    +|. .++.+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~--------~~~~~v~~----~~~-~~~~~   68 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGPND--------YETLKVCE----VYI-VPVPI   68 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhcccc--------ccccChhh----eee-cCCcE
Confidence            678999999999999999889999999998 48999999999997743111        12345777    475 77889


Q ss_pred             EcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       297 V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +.+++++.+++++|.+++.+.+||+|+ +|+++|+||.+|+++
T Consensus        69 v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~  110 (111)
T cd04603          69 VYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR  110 (111)
T ss_pred             ECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence            999999999999999999999999998 899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=3.2e-14  Score=111.52  Aligned_cols=95  Identities=15%  Similarity=0.222  Sum_probs=85.0

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++++++++.++.+.|.+++++.+||+|+++|+++|++|..|+.+.+                           . ++
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~---------------------------~-~~   53 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL---------------------------R-LV   53 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe---------------------------e-eE
Confidence            3788999999999999999999999999986337899999999996533                           1 56


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCC-CeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~-g~liGiIt~~DIl~  339 (351)
                      ++.+++++.+|+++|.+++++++||+|+ + |+++|+||.+|++.
T Consensus        54 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~   97 (98)
T cd04618          54 SIHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILK   97 (98)
T ss_pred             EeCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhc
Confidence            8999999999999999999999999998 6 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=6.3e-14  Score=112.33  Aligned_cols=111  Identities=19%  Similarity=0.422  Sum_probs=95.2

Q ss_pred             cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceE
Q 018713          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (351)
Q Consensus       217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~  296 (351)
                      +.++++++++.++++.|.+.+...+||+|+ +|+++|+++..|+++.+......     ....++.+    +|. .++++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~~-----~~~~~v~~----~~~-~~~~~   71 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGGP-----GCTAPVEN----VMT-RAVVS   71 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCCC-----cccCCHHH----Hhc-CCCee
Confidence            678999999999999999999999999998 48999999999998866431110     13456777    475 78889


Q ss_pred             EcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       297 V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +.+++++.++++.|.+++.+++||+|+ +|+++|+|+.+|+++
T Consensus        72 v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~  113 (114)
T cd04619          72 CRPGDLLHDVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK  113 (114)
T ss_pred             ECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence            999999999999999999999999997 789999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.56  E-value=9.6e-14  Score=133.98  Aligned_cols=200  Identities=18%  Similarity=0.297  Sum_probs=150.8

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      ++++++.+..++.++...+.+++++++||+|.+.+       .++.+++..-|+.++.......                
T Consensus       162 ~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~-------~v~~ilt~~rIl~~l~~~~~~~----------------  218 (381)
T KOG1764|consen  162 PPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETG-------EVLYILTQRRILKFLWLNGRLL----------------  218 (381)
T ss_pred             CCceeecCcHHHHHHHHHHHhCCccceeeeccccc-------ceeeehhHHHHHHHHHHhhccc----------------
Confidence            44499999999999999999999999999996543       8999999999997765543211                


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                          .  +       ..+...++.|.-... |
T Consensus       219 ----------------------------------------------------~--~-------~~~l~~s~~dl~ig~-~  236 (381)
T KOG1764|consen  219 ----------------------------------------------------P--L-------PSLLSKSLSDLGIGT-W  236 (381)
T ss_pred             ----------------------------------------------------c--c-------HHHhhCCHHHhCcch-h
Confidence                                                                0  0       001122333322211 3


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhh-ccCcccccccCccCCCC
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII-ASQPISDLGLPFMSSDE  293 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l-~~~~v~~L~~~~m~~~~  293 (351)
                      ..+..+..++++.+|++.|...+++.+||+|. +|+.+|+++..|+.....++. +..+... ........+   .....
T Consensus       237 ~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-~g~~v~~~s~~Dv~~l~~~~~-~~~~~~~~l~~~~~~~~---~~~~~  311 (381)
T KOG1764|consen  237 SNIASISEDTPVIEALKIMSERRISALPVVDE-NGKKVGNYSRFDVIHLAREGT-YNNLDLSCLSEALSHRP---IRFEG  311 (381)
T ss_pred             hhheeecCCCcHHHHHHHHHhcCcCcceEEcC-CCceecceehhhhhhhhhcCc-cCccchhHHHHHhhhcc---cccCc
Confidence            45889999999999999999999999999998 478899999999987776543 2221111 011111111   12256


Q ss_pred             ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE  345 (351)
Q Consensus       294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~  345 (351)
                      +++|+++.++.+++..|..+++|+++|||+ +|.++|+||..||+.++....
T Consensus       312 vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~-~~~l~GvvSLsDil~~l~~~p  362 (381)
T KOG1764|consen  312 VVTCRPTSTLAEVIDKLVAHRVHRLWVVDE-DGVLVGVISLSDILSYLVLTP  362 (381)
T ss_pred             cEEEeecchHHHHHHHHHhcCceEEEEEcC-CCcEEEEeeHHHHHHHHHhCc
Confidence            899999999999999999999999999999 999999999999999987664

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.56  E-value=4.3e-14  Score=132.25  Aligned_cols=129  Identities=12%  Similarity=0.224  Sum_probs=109.2

Q ss_pred             CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhc
Q 018713          198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA  277 (351)
Q Consensus       198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~  277 (351)
                      -.+...+|+++|++.  .++.++++++++.++++.+.+++++++||++++.++++|+|+.+|++..+....        .
T Consensus        62 l~l~~~~V~diMtpr--~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~--------~  131 (292)
T PRK15094         62 MDIADQRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA--------E  131 (292)
T ss_pred             hccCCCEEeEEccch--HHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC--------C
Confidence            348889999999954  569999999999999999999999999999863368999999999987653211        1


Q ss_pred             cCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       278 ~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      ...+.+    +|  ++++++++++++.++++.|.+++.+.+||+|+ .|.++|+||.+||++.+.+
T Consensus       132 ~~~l~~----l~--r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivG  190 (292)
T PRK15094        132 AFSMDK----VL--RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG  190 (292)
T ss_pred             cCCHHH----Hc--CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhC
Confidence            223566    46  45668999999999999999999999999998 8999999999999998865

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=7e-14  Score=112.78  Aligned_cols=112  Identities=18%  Similarity=0.369  Sum_probs=94.2

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCC-CCc
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DEV  294 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~-~~v  294 (351)
                      ++.++++++++.++++.|..++...+||+|++ ++++|+|+..|+++.......      +...++.+    +|.. +++
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~------~~~~~~~~----~~~~~~~~   70 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGAD------LQKVPVGV----IMTRMPNI   70 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCC------ccCCCHHH----HhCCCCCc
Confidence            57889999999999999998999999999984 799999999999887753221      12345666    4642 368


Q ss_pred             eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCC---CeEEEEEeHHHHHH
Q 018713          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQ---KKIVGNVSIRDIRH  339 (351)
Q Consensus       295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~---g~liGiIt~~DIl~  339 (351)
                      +++++++++.+++++|.+++.+++||+|+ +   |+++|+||.+||++
T Consensus        71 ~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          71 TTTTPEESVLEAAKKLIEHQVDSLPVVEK-VDEGLEVIGRITKTNITK  117 (118)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCEeeEEeC-CCccceEEEEEEhhheec
Confidence            89999999999999999999999999998 5   69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.55  E-value=6.4e-15  Score=149.78  Aligned_cols=271  Identities=15%  Similarity=0.196  Sum_probs=166.8

Q ss_pred             CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHH---h-
Q 018713           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA---A-  119 (351)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~---~-  119 (351)
                      .++.++|.   ++++++++++++.+|++.|.+++++.+||+|+++        +++|+|+..||..++....+..   . 
T Consensus        68 ~~V~dim~---~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g--------~l~Givt~~di~~~~~~~~~~~~~~~~  136 (546)
T PRK14869         68 PQVRDLEI---DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEG--------KLLGLVSLSDLARAYMDILDPEILSKS  136 (546)
T ss_pred             CcHHHhcC---CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCC--------EEEEEEEHHHHHHHHHhhcchhhhhhc
Confidence            67788886   6899999999999999999999999999999753        8999999999998776643210   0 


Q ss_pred             ------------hhhcccccc---------cccccc----ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccC
Q 018713          120 ------------AAFSVGTAT---------AAGVGT----GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKG  174 (351)
Q Consensus       120 ------------~~~~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (351)
                                  .++..+...         .+.+..    +.+.+...+..|.+...+...+.+++.+..++||..+...
T Consensus       137 ~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~  216 (546)
T PRK14869        137 PTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSED  216 (546)
T ss_pred             CCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHH
Confidence                        000000000         000000    0011111223344444444444445444457777654221


Q ss_pred             CC---CCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhh-ccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCC
Q 018713          175 AG---KDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIK-SYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD  250 (351)
Q Consensus       175 ~~---~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~-~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~  250 (351)
                      ..   .+...+.=.+..|.++...  ......+|.++|+ .+    +.++++++++.++.+.|.+++++++||+|+ +|+
T Consensus       217 v~~la~~~~i~ii~t~~dt~~t~~--~l~~~~~V~~iM~~~~----~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-~g~  289 (546)
T PRK14869        217 VLELAKENGVTVISTPYDTFTTAR--LINQSIPVSYIMTTED----LVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-DGK  289 (546)
T ss_pred             HHHHHHhCCCeEEEecccHHHHHH--HhhcCCCHHHhccCCC----cEEECCCCcHHHHHHHHHhcCCCceEEEcC-CCC
Confidence            00   0000011112233443333  2344679999998 55    899999999999999999999999999998 489


Q ss_pred             EEEEEeHHHHHHHhhc------CCCCch-hhh---------hccCcccccccCccCCCCceEE---cCCCcHHHHHHHHH
Q 018713          251 IKNYITQSAVVQGLEG------CKGRDW-FDI---------IASQPISDLGLPFMSSDEVITI---QSNELILEAFKRMK  311 (351)
Q Consensus       251 liGiIt~~dil~~l~~------~~~~~~-l~~---------l~~~~v~~L~~~~m~~~~v~~V---~~~~~l~~al~~m~  311 (351)
                      ++|+||..|+++....      +..... ...         +...++++    +++ ..++.+   +...+...+.++|.
T Consensus       290 lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~----~~~-~~pi~~~~~~~gst~tiv~~~~~  364 (546)
T PRK14869        290 VVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIIDHHRLGD----IQT-SNPIFFRNEPVGSTSTIVARMYR  364 (546)
T ss_pred             EEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEecCCccCC----CCC-CCCcEEEeeeeeeHHHHHHHHHH
Confidence            9999999999886532      110000 000         11123333    344 333333   33566678888899


Q ss_pred             hcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          312 DNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       312 ~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++++...|++..  .-+.|+++-++.++
T Consensus       365 ~~~i~~~~~ia~--~ll~gIlsDT~~f~  390 (546)
T PRK14869        365 ENGIEPSPEIAG--LLLAAILSDTLLFK  390 (546)
T ss_pred             HcCCCCCHHHHH--HHHHHHHHHhcCcc
Confidence            999887777754  56778877766654

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.54  E-value=7.9e-14  Score=136.46  Aligned_cols=126  Identities=11%  Similarity=0.200  Sum_probs=109.4

Q ss_pred             CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713          199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (351)
Q Consensus       199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~  278 (351)
                      .+...+|+++|++.  .++.+++.++++.++++.+.+++++++||++++.++++|+|+.+|++.++...          .
T Consensus       187 ~l~~~~v~diMtpr--~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~----------~  254 (408)
T TIGR03520       187 SFGNTDTKQVMRPR--LDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK----------N  254 (408)
T ss_pred             ccCCCEeeeeCCch--HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC----------C
Confidence            47889999999965  67999999999999999999999999999987446899999999998765321          1


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .++.+    +|  +++.+|++++++.++++.|.+++.+.++|+|+ .|..+|+||.+||++.+.+
T Consensus       255 ~~l~~----~~--~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivg  312 (408)
T TIGR03520       255 FDWQS----LL--REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVG  312 (408)
T ss_pred             CCHHH----Hc--CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhC
Confidence            23555    35  57789999999999999999999999999998 8999999999999998853

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.53  E-value=2.2e-13  Score=108.74  Aligned_cols=109  Identities=22%  Similarity=0.352  Sum_probs=94.0

Q ss_pred             cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceE
Q 018713          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (351)
Q Consensus       217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~  296 (351)
                      +.++.+++++.++++.|.+.+.+.++|+|++ |+++|+++.+|+++.+.+...       ...++.+    +|. .++.+
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~-------~~~~v~~----~~~-~~~~~   70 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLS-------LDDPVSE----VMN-RNPIT   70 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCC-------cCCCHHH----hhc-CCCEE
Confidence            6779999999999999998899999999884 899999999999877654321       2345777    475 77889


Q ss_pred             EcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       297 V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +.+++++.++++.|.+++.+.+||+++ +|+++|+||.+||+.
T Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~  112 (113)
T cd04607          71 AKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLLS  112 (113)
T ss_pred             EcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence            999999999999999999999999997 799999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.53  E-value=1.3e-13  Score=113.60  Aligned_cols=121  Identities=26%  Similarity=0.412  Sum_probs=102.6

Q ss_pred             cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713           43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF  122 (351)
Q Consensus        43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~  122 (351)
                      .+++..+|.   +++++|+|++++.+|+++|..++++.+||++++         +++|-|+-.+|+..+++..       
T Consensus        64 ~ita~~iM~---spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~---------k~VGsItE~~iv~~~le~~-------  124 (187)
T COG3620          64 RITAKTIMH---SPVVSVSPDDSISDVVNLMRDKGISQLPVIEED---------KVVGSITENDIVRALLEGM-------  124 (187)
T ss_pred             eEeHhhhcc---CCeeEECchhhHHHHHHHHHHcCCccCceeeCC---------eeeeeecHHHHHHHHhccc-------
Confidence            467788887   899999999999999999999999999999875         8999999999996654432       


Q ss_pred             ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713          123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS  202 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~  202 (351)
                                                                                                 +....
T Consensus       125 ---------------------------------------------------------------------------e~i~~  129 (187)
T COG3620         125 ---------------------------------------------------------------------------ESIRS  129 (187)
T ss_pred             ---------------------------------------------------------------------------cchhh
Confidence                                                                                       11345


Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      .+|.++|.    .++.+++++.++..+-.++..  ...+.|++  +|+++||||+.|+++.+.
T Consensus       130 ~~vr~vM~----e~fP~Vs~~~~l~vI~~LL~~--~~AVlV~e--~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         130 LRVREVMG----EPFPTVSPDESLNVISQLLEE--HPAVLVVE--NGKVVGIITKADIMKLLA  184 (187)
T ss_pred             hhHHHHhc----CCCCcCCCCCCHHHHHHHHhh--CCeEEEEe--CCceEEEEeHHHHHHHHh
Confidence            78999999    789999999999998888865  45778885  469999999999998874

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.53  E-value=1.5e-13  Score=130.60  Aligned_cols=123  Identities=20%  Similarity=0.321  Sum_probs=105.8

Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v  281 (351)
                      ..+|+++|.++  .++.++++++++.++++.|.+++...+||+|+ +|+++|+|+..|+.+.+.....       ...++
T Consensus       196 ~~~V~~im~~~--~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~~-------~~~~v  265 (321)
T PRK11543        196 LNKVHHLMRRD--DAIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGGA-------LTTPV  265 (321)
T ss_pred             HhHHHHHhccC--CCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCCC-------cCCcH
Confidence            47899999932  23899999999999999999888899999998 4899999999999887643221       23457


Q ss_pred             cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 018713          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  340 (351)
Q Consensus       282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~  340 (351)
                      .+    +|. ++++++.+++++.++++.|.+++..++||+|+ +|+++|+||..||+++
T Consensus       266 ~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~  318 (321)
T PRK11543        266 NE----AMT-RGGTTLQAQSRAIDAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA  318 (321)
T ss_pred             HH----hcC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence            77    586 78889999999999999999999999999997 7899999999999864

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.52  E-value=2.1e-13  Score=130.01  Aligned_cols=124  Identities=18%  Similarity=0.269  Sum_probs=105.4

Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCc
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~  280 (351)
                      ...+|+++|.+.  +++.++++++++.++++.|.+++...+||+|+ +|+++|+||..|+.+.+..+..      +...+
T Consensus       200 ~~~~V~dim~~~--~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~~~------~~~~~  270 (326)
T PRK10892        200 LLLRVSDIMHTG--DEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMGID------LRQAS  270 (326)
T ss_pred             ccCcHHHHhCCC--CCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcCCC------cccCC
Confidence            556899999941  26999999999999999999888888888887 4899999999999876643311      13457


Q ss_pred             ccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 018713          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  340 (351)
Q Consensus       281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~  340 (351)
                      +.+    +|. +++.++.+++++.+|++.|.+++++.+||+++  |+++|+||..||++.
T Consensus       271 v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~  323 (326)
T PRK10892        271 IAD----VMT-PGGIRVRPGILAVDALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA  323 (326)
T ss_pred             HHH----hcC-CCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence            888    586 88999999999999999999999999999986  899999999999874

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.52  E-value=3.4e-13  Score=107.97  Aligned_cols=111  Identities=14%  Similarity=0.277  Sum_probs=94.3

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++.+|+++.+.+....      ...++.+    +|. .+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~------~~~~~~~----~~~-~~~~   69 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEAG------EPSAVDE----VAT-PPLL   69 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhccccc------ccccHHH----hcc-CCce
Confidence            3678899999999999999999999999998 48999999999998876532210      1233666    465 7889


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCC--CeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQ--KKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~--g~liGiIt~~DIl~  339 (351)
                      ++.+++++.++++.|.+++...+||+|+ +  |+++|+||.+||++
T Consensus        70 ~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~  114 (115)
T cd04593          70 TVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLL  114 (115)
T ss_pred             EECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhc
Confidence            9999999999999999999999999998 6  79999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=2.6e-13  Score=110.12  Aligned_cols=118  Identities=22%  Similarity=0.395  Sum_probs=92.2

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCc-hhhhhc--cCcccccccCccCCC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-WFDIIA--SQPISDLGLPFMSSD  292 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~-~l~~l~--~~~v~~L~~~~m~~~  292 (351)
                      ++.++.+++++.++++.|.+++++++||+|+++++++|+|+..|+++++..+.... ..+...  ...+.+    +|. .
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~   76 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLT----IGT-S   76 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcc----cCc-C
Confidence            47789999999999999998899999999873278999999999988764331100 000000  011112    354 7


Q ss_pred             CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       293 ~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++.++++++++.+|++.|.+++.+++||+|+ +|+++|+||.+||..
T Consensus        77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~~  122 (123)
T cd04627          77 DVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDVRL  122 (123)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhhc
Confidence            8889999999999999999999999999998 799999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.51  E-value=2.6e-13  Score=109.91  Aligned_cols=118  Identities=21%  Similarity=0.343  Sum_probs=96.3

Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhh----hccCcccccccCccC
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI----IASQPISDLGLPFMS  290 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~----l~~~~v~~L~~~~m~  290 (351)
                      +++.++.+++++.++.+.|.+.+++++||++++ |+++|+++..++++.+...........    ....++.+    +|.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~   76 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD----IMS   76 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH----hcc
Confidence            458889999999999999999899999999884 899999999999877643221000000    12334666    575


Q ss_pred             CCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       291 ~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                       ..++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..|++.
T Consensus        77 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~  123 (124)
T cd04600          77 -PPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA  123 (124)
T ss_pred             -CCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence             78899999999999999999999999999997 799999999999975

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=5.2e-13  Score=106.18  Aligned_cols=110  Identities=26%  Similarity=0.449  Sum_probs=95.1

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++++++++.++++.|.+.+++++||+|++ ++++|+++..|+++.+.+...       ...++.+    +|. .+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~-------~~~~v~~----~~~-~~~~   68 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGID-------LDTPVSE----IMT-RDLV   68 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCC-------CccCHHH----hcc-CCCE
Confidence            46789999999999999998899999999984 899999999999887754321       2345667    475 7888


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++..++++.++++.|.+++...+||+++ +|+++|++|.+|+++
T Consensus        69 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~  111 (112)
T cd04624          69 TVDPDEPVAEAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR  111 (112)
T ss_pred             EECCCCcHHHHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence            9999999999999999999999999998 799999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.50  E-value=7e-14  Score=136.08  Aligned_cols=157  Identities=16%  Similarity=0.245  Sum_probs=126.1

Q ss_pred             cccchhhHHHHHhhhccC--CCChHHHHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCC
Q 018713           12 KLSSCDAYFEAIQSRKKL--PHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAP   89 (351)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~   89 (351)
                      +-++|..||..-..++..  .....+...+-|-.+.+.+++.   .+.++|++.+|+.+|.+.|.++++.++.|++.++ 
T Consensus       115 ~n~~f~~ff~~~~akR~~~~~~~~~eq~~~e~~~trv~~~~~---~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~-  190 (610)
T COG2905         115 ENPEFADFFLRSLAKRLRDIADRLAEQGESEFILTRVGEVKT---LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSG-  190 (610)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhc---CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCC-
Confidence            356788999965554332  2223332224445566777776   6889999999999999999999999999998764 


Q ss_pred             CCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhccc
Q 018713           90 SSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGL  169 (351)
Q Consensus        90 ~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (351)
                             ..+||||..|+...++..                                                       
T Consensus       191 -------~~~GIvT~~dl~~~v~~~-------------------------------------------------------  208 (610)
T COG2905         191 -------PLLGIVTRKDLRSRVIAD-------------------------------------------------------  208 (610)
T ss_pred             -------CccceeehHHHHHHHHhc-------------------------------------------------------
Confidence                   699999999988654432                                                       


Q ss_pred             ccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCC
Q 018713          170 AAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP  249 (351)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g  249 (351)
                                                  ......+|+++|+    .|++++++++.+.+|+-.|.+++++++||+++  |
T Consensus       209 ----------------------------g~~~~~~V~evmT----~p~~svd~~~~~feAml~m~r~~I~hl~V~e~--g  254 (610)
T COG2905         209 ----------------------------GRSKTQKVSEVMT----SPVISVDRGDFLFEAMLMMLRNRIKHLPVTED--G  254 (610)
T ss_pred             ----------------------------CCCcccchhhhhc----cCceeecCcchHHHHHHHHHHhCCceeeeecC--C
Confidence                                        3355689999999    78999999999999999999999999999986  5


Q ss_pred             CEEEEEeHHHHHHHhhcCC
Q 018713          250 DIKNYITQSAVVQGLEGCK  268 (351)
Q Consensus       250 ~liGiIt~~dil~~l~~~~  268 (351)
                      +++|+||.+||++...++.
T Consensus       255 q~~Gilt~~dIl~l~s~~~  273 (610)
T COG2905         255 QPLGILTLTDILRLFSQNS  273 (610)
T ss_pred             eeeEEeeHHHHHHhhCCCc
Confidence            9999999999999987654

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.50  E-value=1.1e-12  Score=122.77  Aligned_cols=164  Identities=14%  Similarity=0.184  Sum_probs=124.9

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA  120 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~  120 (351)
                      |...++.++|. ++.+++++++++|+.++++.+.+++.+++||++++.       ++++|+|+..|++.....       
T Consensus        64 l~~~~V~diMt-pr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~-------d~iiGiv~~kDll~~~~~-------  128 (292)
T PRK15094         64 IADQRVRDIMI-PRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK-------DHIEGILMAKDLLPFMRS-------  128 (292)
T ss_pred             cCCCEEeEEcc-chHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCC-------CcEEEEEEHHHHHhHhhc-------
Confidence            56679999997 556899999999999999999999999999998652       389999999998832100       


Q ss_pred             hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713          121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF  200 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~  200 (351)
                                                                                                   . .
T Consensus       129 -----------------------------------------------------------------------------~-~  130 (292)
T PRK15094        129 -----------------------------------------------------------------------------D-A  130 (292)
T ss_pred             -----------------------------------------------------------------------------c-C
Confidence                                                                                         0 0


Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCc
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~  280 (351)
                      ....+.++|.    + +.++++++++.++++.|.+++.+.+||+|+. |.++|+||.+|+++.+.... .+..+......
T Consensus       131 ~~~~l~~l~r----~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei-~de~d~~~~~~  203 (292)
T PRK15094        131 EAFSMDKVLR----Q-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEI-EDEYDEEDDID  203 (292)
T ss_pred             CcCCHHHHcC----C-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCC-ccccccccccc
Confidence            1234677776    2 4589999999999999999999999999984 78999999999999986543 12211101112


Q ss_pred             ccccccCccCCCCceEEcCCCcHHHHHHHH
Q 018713          281 ISDLGLPFMSSDEVITIQSNELILEAFKRM  310 (351)
Q Consensus       281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m  310 (351)
                      +..+      ...-+.|+..+++.+..+.+
T Consensus       204 i~~~------~~~~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        204 FRQL------SRHTWTVRALASIEDFNEAF  227 (292)
T ss_pred             cEEe------CCCeEEEEeccCHHHHHHHh
Confidence            3331      24567899999999988776

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=4.1e-13  Score=106.61  Aligned_cols=109  Identities=16%  Similarity=0.347  Sum_probs=94.4

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++.+++++.++++.|.+.+...+||+|+ +|+++|+++..++.+.+.+..        ...++.+    +|. .+++
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~--------~~~~v~~----~~~-~~~~   67 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGG--------PDAPVRG----VMR-RDFP   67 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcC--------CCCcHHH----Hhc-CCCc
Confidence            4678999999999999998888999999998 479999999999988775432        2245667    465 7888


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++.+++++.++++.|.+++...+||+++ +|+++|+||..|+.+
T Consensus        68 ~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~  110 (111)
T cd04639          68 TVSPSATLDAVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGE  110 (111)
T ss_pred             EECCCCcHHHHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhc
Confidence            9999999999999999999999999997 799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.50  E-value=7.9e-13  Score=104.74  Aligned_cols=108  Identities=22%  Similarity=0.452  Sum_probs=93.9

Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v  294 (351)
                      +++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++..++++.+....          .++.+    +|. .++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~----------~~~~~----~~~-~~~   65 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDK----------KSVED----IMT-RNV   65 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCc----------cCHHH----hcC-CCC
Confidence            457889999999999999999999999999984 89999999999987664321          23666    465 788


Q ss_pred             eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      .++.+++++.++++.|.+++.+.+||+++ +|+++|+||..||++
T Consensus        66 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~  109 (110)
T cd04605          66 ITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDISK  109 (110)
T ss_pred             eEECCCCcHHHHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence            89999999999999999999999999998 899999999999965

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=6e-13  Score=106.43  Aligned_cols=112  Identities=16%  Similarity=0.226  Sum_probs=94.1

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++.+++++.++++.|.+++++.+||+|++.++++|+++..|+++.+.....     .....++.+    +|. .+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~-----~~~~~~v~~----~~~-~~~~   71 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR-----DPDRVNVYE----IMT-KPLI   71 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC-----CCCccCHHH----Hhc-CCCe
Confidence            478899999999999999988999999998721799999999999886643211     012346777    475 7889


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++++++++.++++.|.+++.+.+||+|+  |+++|+|+..|++.
T Consensus        72 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~  113 (114)
T cd04630          72 SVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFL  113 (114)
T ss_pred             eECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence            9999999999999999999999999987  89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=7.8e-13  Score=104.97  Aligned_cols=111  Identities=23%  Similarity=0.422  Sum_probs=94.5

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++.+++++.++++.|.+++++++||+|++ ++++|+++..|+++.+......     ....++.+    +|. +++.
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~-----~~~~~~~~----~~~-~~~~   70 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGAS-----ALDTPVSE----IMT-RNVI   70 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCC-----ccccCHHH----hcC-CCcE
Confidence            46789999999999999999999999999984 7999999999999877543210     02346777    575 7889


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++.+++++.++++.|.+.+.+++||+++  |+++|+||.+||++
T Consensus        71 ~v~~~~~~~~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  112 (113)
T cd04623          71 TVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK  112 (113)
T ss_pred             EECCCCcHHHHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence            9999999999999999999999999987  89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.49  E-value=3.6e-13  Score=107.61  Aligned_cols=110  Identities=15%  Similarity=0.210  Sum_probs=91.2

Q ss_pred             CcEEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCC-CC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DE  293 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~-~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~-~~  293 (351)
                      ++.++++++++.++++.|.+++ .+.+||+|+ +|+++|+++..|+++......        ...++.+    +|.. .+
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~--------~~~~v~~----~~~~~~~   68 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQW--------AQTTVIQ----VMTPAAK   68 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhhc--------cccchhh----hhccccc
Confidence            4778999999999999997665 889999988 489999999999988764221        2345666    4541 23


Q ss_pred             ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++++.+++++.++++.|.+++.+++||+|+ +|+++|+|+..||++
T Consensus        69 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~  113 (114)
T cd04801          69 LVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR  113 (114)
T ss_pred             ceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence            678999999999999999999999999997 789999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=6.8e-13  Score=105.64  Aligned_cols=110  Identities=23%  Similarity=0.297  Sum_probs=94.0

Q ss_pred             cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceE
Q 018713          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (351)
Q Consensus       217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~  296 (351)
                      +.++.+++++.++++.|.+.+.+.+||+|++ ++++|+++..|+++...+...      +...++.+    +|. .++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~------~~~~~i~~----~~~-~~~~~   70 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEE------LKDAKVRE----VMN-SPVIT   70 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhh------hcCCcHHH----hcc-CCceE
Confidence            6788999999999999999999999999984 799999999999876533211      13446777    575 78899


Q ss_pred             EcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       297 V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +..++++.++++.|.+++.+.+||+|+ +|+++|+|+..|+++
T Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~  112 (113)
T cd04615          71 IDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR  112 (113)
T ss_pred             ECCCCcHHHHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence            999999999999999999999999998 889999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=5.4e-13  Score=108.85  Aligned_cols=117  Identities=16%  Similarity=0.271  Sum_probs=92.1

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhh-----hc--cCcccccccCc
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI-----IA--SQPISDLGLPF  288 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~-----l~--~~~v~~L~~~~  288 (351)
                      .+.++++++++.++++.|.++++..+||+|++ |+++|+++..|+++.............     +.  -....+    .
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~   76 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDG----V   76 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccc----c
Confidence            37789999999999999999999999999984 899999999999887643221000000     00  011112    2


Q ss_pred             cCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       289 m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +. .++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||..||++
T Consensus        77 ~~-~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~  125 (126)
T cd04642          77 KS-RPLITCTPSSTLKEVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS  125 (126)
T ss_pred             cc-CCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence            43 77889999999999999999999999999998 799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=7.1e-13  Score=105.30  Aligned_cols=109  Identities=22%  Similarity=0.342  Sum_probs=93.2

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++++++++.++++.|.+++++.+||+|++ |+++|+++..|++.+......       ...++.+    +|. .++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~-------~~~~v~~----~~~-~~~~   68 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESF-------LEKKVFN----IVS-QDVF   68 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhccc-------ccCcHHH----Hhc-CCcE
Confidence            47789999999999999999999999999884 899999999999876533210       2346777    475 7888


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++.+++++.++++.|.+++...+||+++  |+++|+||..||+.
T Consensus        69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~  110 (111)
T cd04626          69 YVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD  110 (111)
T ss_pred             EEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence            9999999999999999999999999987  89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.48  E-value=2.3e-13  Score=111.16  Aligned_cols=114  Identities=15%  Similarity=0.218  Sum_probs=94.9

Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v  294 (351)
                      +++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++.+.+....      ...++.+    +|. +++
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~------~~~~v~~----im~-~~~   69 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQ------PSDPVSK----ALY-KQF   69 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccC------CCCcHHH----Hhh-ccc
Confidence            357889999999999999999999999999984 7999999999998766543210      3567888    586 889


Q ss_pred             eEEcCCCcHHHHHHHHH---------hcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713          295 ITIQSNELILEAFKRMK---------DNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (351)
Q Consensus       295 ~~V~~~~~l~~al~~m~---------~~~~~~lpVvd~~~g~liGiIt~~DIl~~l  341 (351)
                      .++.+++++.++.++|.         +.+...+||+++ +|+++|+||..||++++
T Consensus        70 ~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          70 KRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             eecCCCCCHHHHHhhcccCCceEEEecccccccccccc-ccceEEEEehhHhhhhC
Confidence            99999999999999653         335677888887 89999999999999764

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.48  E-value=1.1e-12  Score=128.38  Aligned_cols=164  Identities=12%  Similarity=0.160  Sum_probs=127.7

Q ss_pred             HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713           40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA  119 (351)
Q Consensus        40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~  119 (351)
                      .|++++++++|. |+.++++++.++++.++++.|.+++++++||++++       .++++|+|+..|++.+.-       
T Consensus       187 ~l~~~~v~diMt-pr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~-------~d~ivGiv~~kDll~~~~-------  251 (408)
T TIGR03520       187 SFGNTDTKQVMR-PRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET-------IDNITGVLYIKDLLPHLN-------  251 (408)
T ss_pred             ccCCCEeeeeCC-chHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC-------CCceEEEEEHHHHHhHhc-------
Confidence            356899999997 66789999999999999999999999999999865       248999999999883210       


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                                                                                                    . 
T Consensus       252 ------------------------------------------------------------------------------~-  252 (408)
T TIGR03520       252 ------------------------------------------------------------------------------K-  252 (408)
T ss_pred             ------------------------------------------------------------------------------c-
Confidence                                                                                          0 


Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                       ...++.++|+     ++.++++++++.++++.|.+++.+.++|+|+. |...|+||.+|+++.+.... .+..+. ...
T Consensus       253 -~~~~l~~~~~-----~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei-~de~d~-~~~  323 (408)
T TIGR03520       253 -KNFDWQSLLR-----EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDI-SDEFDD-EDL  323 (408)
T ss_pred             -CCCCHHHHcC-----CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCC-CCcCCc-Ccc
Confidence             1124566765     47899999999999999999999999999985 88999999999999986432 122111 112


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHh
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKD  312 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~  312 (351)
                      .+..+     . +..+.++..+++.++.+.|.-
T Consensus       324 ~i~~~-----~-~~~~~v~G~~~l~~l~~~l~~  350 (408)
T TIGR03520       324 IYSKI-----D-DNNYVFEGKTSLKDFYKILKL  350 (408)
T ss_pred             ceEEe-----C-CCeEEEEeccCHHHHHHHhCC
Confidence            23331     1 556788999999999988743

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=1.1e-12  Score=105.10  Aligned_cols=112  Identities=17%  Similarity=0.281  Sum_probs=93.7

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      .+.++++++++.+|++.|.+++...+||+|+++        +++|+++..|+...+...                     
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g--------~~~G~vt~~dl~~~~~~~---------------------   52 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHG--------KLAGVLTKTDVVRQMGRC---------------------   52 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCC--------CEEEEEehHHHHHHHhhc---------------------
Confidence            467899999999999999999999999998754        899999999987432110                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                   .......++.++|.    .
T Consensus        53 -------------------------------------------------------------~~~~~~~~v~~~~~----~   67 (114)
T cd04619          53 -------------------------------------------------------------GGPGCTAPVENVMT----R   67 (114)
T ss_pred             -------------------------------------------------------------CCCcccCCHHHHhc----C
Confidence                                                                         01123467889998    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++..++||+|++ |+++|+|+++|+++
T Consensus        68 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~  113 (114)
T cd04619          68 AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK  113 (114)
T ss_pred             CCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence            58999999999999999999999999999974 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.48  E-value=3.4e-13  Score=131.36  Aligned_cols=128  Identities=19%  Similarity=0.332  Sum_probs=113.7

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc-CCCCchhhhhcc
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG-CKGRDWFDIIAS  278 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~-~~~~~~l~~l~~  278 (351)
                      +..+.|.++++    .|++++++.+++.+|...|.+.|++.+.++++ ++...||||.+|+...... +..       ..
T Consensus       146 ~~~trv~~~~~----~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g~~-------~~  213 (610)
T COG2905         146 FILTRVGEVKT----LPAVTVSPQASIQDAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADGRS-------KT  213 (610)
T ss_pred             HHHHHHHHHhc----CCCcccCccCcHHHHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcCCC-------cc
Confidence            44467899999    67999999999999999999999999999988 4899999999999887643 322       46


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCccc
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL  346 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~~  346 (351)
                      .++++    +|+ .++++|+..+.+.+|+-+|.+++++++||+++  |+++|+||.+||+..+..+.+
T Consensus       214 ~~V~e----vmT-~p~~svd~~~~~feAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s~~~~  274 (610)
T COG2905         214 QKVSE----VMT-SPVISVDRGDFLFEAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFSQNSI  274 (610)
T ss_pred             cchhh----hhc-cCceeecCcchHHHHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhCCCce
Confidence            78999    697 99999999999999999999999999999987  999999999999999987654

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.48  E-value=2.5e-12  Score=127.54  Aligned_cols=170  Identities=14%  Similarity=0.177  Sum_probs=128.5

Q ss_pred             HHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhH
Q 018713           37 LTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAE  116 (351)
Q Consensus        37 ~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~  116 (351)
                      ....+...++.++|.   ++++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..|+...      
T Consensus        82 q~~~l~~VKv~~iMi---~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~g--------klvGIVT~rDL~~~------  144 (479)
T PRK07807         82 VAEVVAWVKSRDLVF---DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEG--------RPVGVVTEADCAGV------  144 (479)
T ss_pred             HHHHHhhcccccccc---cCCeEECCCCCHHHHHHHHHhcCCceEEEECCCC--------eEEEEEeHHHHhcC------
Confidence            356678889988886   7889999999999999999999999999998653        89999998887410      


Q ss_pred             HHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhh
Q 018713          117 LAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQ  196 (351)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~  196 (351)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (479)
T PRK07807        145 --------------------------------------------------------------------------------  144 (479)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhh
Q 018713          197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII  276 (351)
Q Consensus       197 ~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l  276 (351)
                         ....++.++|+    .++.++++++++.++++.|.+++++.+||+|++ ++++|+||++||++.........  .+ 
T Consensus       145 ---~~~~~V~diMt----~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~~~~~--~~-  213 (479)
T PRK07807        145 ---DRFTQVRDVMS----TDLVTLPAGTDPREAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYTPAVD--AA-  213 (479)
T ss_pred             ---ccCCCHHHhcc----CCceEECCCCcHHHHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCCchhh--hh-
Confidence               11246899999    569999999999999999999999999999984 79999999999999875432110  00 


Q ss_pred             ccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCe
Q 018713          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK  327 (351)
Q Consensus       277 ~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~  327 (351)
                      ....+..          ...+  .....+.+..|.+.+++. .++|-..|.
T Consensus       214 g~l~V~a----------av~~--~~~~~~~a~~Lv~aGvd~-i~~D~a~~~  251 (479)
T PRK07807        214 GRLRVAA----------AVGI--NGDVAAKARALLEAGVDV-LVVDTAHGH  251 (479)
T ss_pred             hccchHh----------hhcc--ChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence            0111122          1222  234667777888888885 466754454

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=4.7e-13  Score=104.85  Aligned_cols=96  Identities=21%  Similarity=0.414  Sum_probs=83.1

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++|+.+|++.|.++++.++||+|++++       +++|+++..|+...                         
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~-------~~~Givt~~Dl~~~-------------------------   49 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQ-------QFVGMLTITDFILI-------------------------   49 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCC-------EEEEEEEHHHHhhh-------------------------
Confidence            5789999999999999999999999999987422       79999999887721                         


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                               +.     
T Consensus        50 -------------------------------------------------------------------------~~-----   51 (98)
T cd04618          50 -------------------------------------------------------------------------LR-----   51 (98)
T ss_pred             -------------------------------------------------------------------------ee-----
Confidence                                                                                     00     


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                       +.++.+++++.+|++.|.+++++++||+|+++|+++|+||.+|+++
T Consensus        52 -~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 -LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             -eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence             4579999999999999999999999999873379999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.47  E-value=7e-13  Score=105.01  Aligned_cols=105  Identities=19%  Similarity=0.237  Sum_probs=92.1

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++++++++.++++.|.+++.+.+||+|+ +|+++|+++..+++...            ...++.+    +|. .++.
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~------------~~~~v~~----~~~-~~~~   64 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKD------------PDTTIEK----VMT-KNPI   64 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhccc------------ccccHHH----Hhc-CCCe
Confidence            5788999999999999999988999999998 48999999999996432            1335667    465 7788


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++++++++.++++.|.+++.+.+||+++ +|+++|+||..|+++
T Consensus        65 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~  107 (108)
T cd04596          65 TVNPKTSVASVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK  107 (108)
T ss_pred             EECCCCCHHHHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence            9999999999999999999999999997 899999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.47  E-value=9.9e-13  Score=104.65  Aligned_cols=112  Identities=26%  Similarity=0.400  Sum_probs=95.5

Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v  294 (351)
                      .++.++++++++.++++.|.+.+.+.+||+|++ |+++|+++..++.+.+.....      ....++.+    +|. .++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~------~~~~~v~~----~~~-~~~   69 (114)
T cd04604           2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLD------ILTLPVAD----VMT-RNP   69 (114)
T ss_pred             CcccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCc------cccCCHHH----hhc-cCC
Confidence            356788999999999999988888999999984 899999999999988754321      12346777    575 778


Q ss_pred             eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      .++.+++++.++++.|.+++.+.+||+++ +|+++|+|+..||++
T Consensus        70 ~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~  113 (114)
T cd04604          70 KTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR  113 (114)
T ss_pred             eEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence            89999999999999999999999999997 799999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=8.9e-13  Score=106.45  Aligned_cols=117  Identities=22%  Similarity=0.427  Sum_probs=95.7

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch---hhhhccCcccccccCccCCC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW---FDIIASQPISDLGLPFMSSD  292 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~---l~~l~~~~v~~L~~~~m~~~  292 (351)
                      ++.++.+++++.++++.|.+.+++.+||++++ |+++|+++..++++.+........   .......++.+    +|. .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~-~   75 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE----VMK-T   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----hhC-C
Confidence            47789999999999999999999999999984 899999999999887653221100   00112345666    465 7


Q ss_pred             CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       293 ~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +++++.+++++.+++++|.+.+.+.+||+++ +|+++|+||..|+++
T Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~  121 (122)
T cd04803          76 DVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLR  121 (122)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhc
Confidence            8889999999999999999999999999998 789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.2e-12  Score=105.53  Aligned_cols=114  Identities=16%  Similarity=0.223  Sum_probs=93.6

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.++++..+||+|+++        +++|+|+..|++......                     
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~--------~~~Givt~~dl~~~~~~~---------------------   52 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDG--------DLVGVVSRKDLLKASIGG---------------------   52 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC--------CEEEEEEHHHHHHHHHcC---------------------
Confidence            578999999999999999999999999998753        799999999988432110                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    ......++.++|...  .
T Consensus        53 --------------------------------------------------------------~~~~~~~~~~~~~~~--~   68 (118)
T cd04617          53 --------------------------------------------------------------ADLQKVPVGVIMTRM--P   68 (118)
T ss_pred             --------------------------------------------------------------CCccCCCHHHHhCCC--C
Confidence                                                                          112345678888732  2


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCC--CCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT--PDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~--g~liGiIt~~dil~  262 (351)
                      ++.++++++++.++++.|.+++++.+||+|+++  ++++|+||++|+++
T Consensus        69 ~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          69 NITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            588999999999999999999999999998742  68999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1e-12  Score=105.04  Aligned_cols=114  Identities=20%  Similarity=0.331  Sum_probs=93.0

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++++++++.++++.|.+++++.+||+|+ +++++|+++..|+++++.+..... ...+...++.+    +|. .++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~-~~~~~~~~v~~----~~~-~~~~   74 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLENLD-LERLVDLKVID----VMN-TDVP   74 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCchh-HHHHhCCcHHH----Hhc-CCCc
Confidence            3778999999999999999999999999997 479999999999998875432111 10112456777    475 7788


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++.+++++.++++.|.+++  .+||+|+ +|+++|+||..|+++
T Consensus        75 ~v~~~~~l~~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~  115 (116)
T cd04643          75 VIIDDADIEEILHLLIDQP--FLPVVDD-DGIFIGIITRREILK  115 (116)
T ss_pred             eecCCCCHHHHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhc
Confidence            9999999999999998765  5899998 899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=7.9e-13  Score=107.23  Aligned_cols=118  Identities=25%  Similarity=0.459  Sum_probs=95.8

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchh-----hhhccCcccccccCccC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF-----DIIASQPISDLGLPFMS  290 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l-----~~l~~~~v~~L~~~~m~  290 (351)
                      ++.++++++++.++++.|.+++.+.+||+|+++|+++|+|+..|+++++.+.......     ......++.+    +|.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   77 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS----IMT   77 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH----Hhc
Confidence            4778999999999999999999999999987337999999999999877543211000     0112345666    465


Q ss_pred             CCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       291 ~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                       ++++++++++++.++++.|.+.+.+.+||+++ +|+++|+||..||++
T Consensus        78 -~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~  124 (125)
T cd04631          78 -RNVITITPDDSIKDAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLK  124 (125)
T ss_pred             -CCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhc
Confidence             78999999999999999999999999999997 799999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.46  E-value=1.7e-12  Score=102.15  Aligned_cols=104  Identities=18%  Similarity=0.302  Sum_probs=89.9

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++++++++.++++.|.+++.+.+||+|+ +|+++|+++..|+++...             .++.+    +|. +...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~-------------~~~~~----~~~-~~~~   62 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG-------------GCCGD----HAE-PFKV   62 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc-------------cchhh----hcc-cCCE
Confidence            3678999999999999999888999999987 489999999999976431             13455    464 6677


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      .+.+++++.++++.|.+++...+||+|+ +|+++|+|+.+|+++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~  105 (106)
T cd04582          63 TVSVDDDLRIVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIAD  105 (106)
T ss_pred             EECCCCCHHHHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            8999999999999999999999999998 789999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.46  E-value=2e-12  Score=102.03  Aligned_cols=106  Identities=13%  Similarity=0.312  Sum_probs=92.2

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++++++++.++++.|.+++..++||+|++ ++++|+++..|++.....           ..++.+    +|. ..+.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~-----------~~~v~~----~~~-~~~~   65 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE-----------AKSLED----IML-EDVF   65 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc-----------CCcHhH----hhc-CCce
Confidence            47789999999999999998899999999984 899999999999876521           234566    465 7888


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++++++++.++++.|.+++.+++||+++ +|+++|+||.+|+++
T Consensus        66 ~v~~~~~~~~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~  108 (109)
T cd04583          66 TVQPDASLRDVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD  108 (109)
T ss_pred             EECCCCcHHHHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence            9999999999999999999999999998 899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.46  E-value=9.9e-13  Score=104.89  Aligned_cols=109  Identities=14%  Similarity=0.247  Sum_probs=91.3

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.+++...+||+|+++        +++|+++..|+....  .                     
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~dl~~~~--~---------------------   50 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEEN--------KVLGQVTLSDLLEIG--P---------------------   50 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC--------CEEEEEEHHHHHhhc--c---------------------
Confidence            357899999999999999999999999998753        899999999987310  0                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    ......++.++|.    .
T Consensus        51 --------------------------------------------------------------~~~~~~~v~~~~~----~   64 (111)
T cd04603          51 --------------------------------------------------------------NDYETLKVCEVYI----V   64 (111)
T ss_pred             --------------------------------------------------------------ccccccChhheee----c
Confidence                                                                          0112346888887    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++.+++||+|++ |+++|+||.+|+++
T Consensus        65 ~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~  110 (111)
T cd04603          65 PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR  110 (111)
T ss_pred             CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence            58899999999999999999999999999984 79999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.2e-12  Score=102.02  Aligned_cols=94  Identities=19%  Similarity=0.384  Sum_probs=84.4

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+++..|+++..                            .+.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~----------------------------~~~   52 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAKS----------------------------EVV   52 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcCC----------------------------CcE
Confidence            4778999999999999999899999999997 48999999999996421                            256


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++.+++++.++++.|.+++.+++||+++ +|+++|+||.+||++
T Consensus        53 ~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~   95 (96)
T cd04614          53 TATKRTTVSECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLK   95 (96)
T ss_pred             EecCCCCHHHHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            8999999999999999999999999998 799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.9e-12  Score=103.55  Aligned_cols=110  Identities=24%  Similarity=0.387  Sum_probs=90.1

Q ss_pred             CcEEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713          216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~-~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v  294 (351)
                      ++.++++++++.++++.|.+++ ...++|+|+  |+++|+++..|+++.+.....      ....++.+    +|. .++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~------~~~~~i~~----~~~-~~~   68 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKD------LSDLPIGE----VMT-QPV   68 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCC------ccccCHHH----hcC-CCc
Confidence            3678899999999999998877 566777764  699999999999887643211      02346777    475 778


Q ss_pred             eEEcCC--CcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          295 ITIQSN--ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       295 ~~V~~~--~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +++.++  +++.++++.|.+++.+.+||+|+ +|+++|+||.+|+++
T Consensus        69 ~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~  114 (115)
T cd04620          69 VTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ  114 (115)
T ss_pred             EEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence            888887  78999999999999999999998 899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.1e-12  Score=106.02  Aligned_cols=119  Identities=17%  Similarity=0.198  Sum_probs=89.9

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.++++.++||+|+++        +++|+++..|++....+.....                 
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~--------~~~Giv~~~dl~~~~~~~~~~~-----------------   56 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENG--------KVVDVYSRFDVINLAKEGAYNN-----------------   56 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCC--------eEEEEEeHHHHHHHHhcCcccc-----------------
Confidence            678999999999999999999999999998643        8999999999995432110000                 


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                        ...++.+.         ....++|.    .
T Consensus        57 --------------------------------------------------~~~~~~~~---------~~~~~~~~----~   73 (120)
T cd04641          57 --------------------------------------------------LDLTVGEA---------LERRSQDF----E   73 (120)
T ss_pred             --------------------------------------------------ccCCHHHH---------HhhcccCC----C
Confidence                                                              00000000         01122343    4


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG  263 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~  263 (351)
                      ++.++.+++++.++++.|.+++.+.+||+|++ |+++|+||++|++++
T Consensus        74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~~  120 (120)
T cd04641          74 GVRTCSPDDCLRTIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQF  120 (120)
T ss_pred             CCeEEcCCCcHHHHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhcC
Confidence            57899999999999999999999999999984 799999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=9.8e-13  Score=104.80  Aligned_cols=112  Identities=20%  Similarity=0.329  Sum_probs=93.7

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++..++++.+......    .....++.+    +|. .+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~----~~~~~~v~~----~~~-~~~~   71 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYH----CDGVATVRD----IMT-TEVL   71 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhc----cCCCccHHH----Hhc-cCce
Confidence            46789999999999999988888999999984 7999999999998876432100    012345667    575 6788


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++.+++++.++++.|.+++.+.+||+|+  |+++|+||..||++
T Consensus        72 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  113 (114)
T cd04629          72 TVSPDDSIVDLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR  113 (114)
T ss_pred             EECCCCcHHHHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence            9999999999999999999999999997  89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11573 hypothetical protein; Provisional

Probab=99.44  E-value=2.1e-12  Score=126.50  Aligned_cols=131  Identities=15%  Similarity=0.150  Sum_probs=110.6

Q ss_pred             CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713          199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (351)
Q Consensus       199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~  278 (351)
                      .+...+|+++|+|.  ..+..++.++++.++++.+.+++++++||++++.++++|+++.+|++..+.++...      ..
T Consensus       183 ~l~~~~v~eiMtPr--~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~------~~  254 (413)
T PRK11573        183 DLEKVTVDDIMVPR--NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEF------TK  254 (413)
T ss_pred             ccCCCChhhcCCcc--ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcC------CH
Confidence            47889999999976  89999999999999999999999999999977556899999999998765432110      11


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      ..+.+    ++  +++.+|++++++.++++.|++++.+-..|+|+ .|...|+||.+||++.+.+.
T Consensus       255 ~~l~~----~~--r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeivGe  313 (413)
T PRK11573        255 ENMLR----AA--DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVGD  313 (413)
T ss_pred             HHHHh----hc--cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHhCC
Confidence            22334    23  68889999999999999999999998889999 99999999999999987643

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.44  E-value=1.1e-12  Score=134.16  Aligned_cols=128  Identities=12%  Similarity=0.225  Sum_probs=107.8

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      ....+++|+|+    +++.++++++++.++.+.|.+++.+.+||+|++ ++++|+|+.+|+.+.+.....      ....
T Consensus       444 L~~~~V~dim~----~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~------~~~~  512 (574)
T PRK01862        444 LRTTQMRELIQ----PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRD------TTDK  512 (574)
T ss_pred             HhhCcHHHHhc----CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccc------cccc
Confidence            44578999999    458899999999999999999999999999984 899999999999886533211      0234


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCC-CeEEEEEeHHHHHHHhcC
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~-g~liGiIt~~DIl~~l~~  343 (351)
                      ++.+    +|. ++++++++++++.++++.|.+++.+.+||+|+++ ++++|+||.+|+++.+.+
T Consensus       513 ~v~d----im~-~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        513 TAAD----YAH-TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             hHHH----hcc-CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            6777    576 7888999999999999999999999999999722 589999999999998754

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.7e-12  Score=106.75  Aligned_cols=116  Identities=22%  Similarity=0.420  Sum_probs=94.7

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch--------------hhhhccCcc
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--------------FDIIASQPI  281 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~--------------l~~l~~~~v  281 (351)
                      ++.++++++++.++++.|.+.+.+++||+|++ ++++|+++..++++++........              ..++...++
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence            47789999999999999998899999999984 899999999999987754321100              011122356


Q ss_pred             cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      .+    +|. ++++.+.+++++.+++++|.+.+.+.+||+|+  |+++|+||..|+++
T Consensus        81 ~~----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          81 EE----IMT-KKVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             HH----hcc-CCceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            66    465 77889999999999999999999999999997  99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.44  E-value=2.4e-12  Score=102.15  Aligned_cols=109  Identities=14%  Similarity=0.248  Sum_probs=92.2

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++++++++.++++.|.+.+...+||+++++|+++|+++..++++...+...        ..++.+    ++  .++.
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~--------~~~~~~----~~--~~~~   67 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE--------DLDLRD----LL--RPPL   67 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC--------cCCHHH----Hh--cCCe
Confidence            377899999999999999988899999998722799999999999987754221        134555    24  4678


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++.+++++.++++.|.+++.+++||+++ +|+++|+||..|+++
T Consensus        68 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~  110 (111)
T cd04590          68 FVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE  110 (111)
T ss_pred             ecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence            9999999999999999999999999998 899999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2.3e-12  Score=106.88  Aligned_cols=116  Identities=25%  Similarity=0.336  Sum_probs=94.8

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch-----------------hhhhcc
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-----------------FDIIAS  278 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~-----------------l~~l~~  278 (351)
                      ++.++++++++.++++.|.+++...+||+|+ +++++|+++..|+++.+........                 ......
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP   80 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence            3678999999999999999999999999998 4899999999999987743211100                 000123


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      .++.+    +|. .++..+.+++++.++++.|.+++.+.+||+++  |+++|+||.+||++
T Consensus        81 ~~v~~----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~  134 (135)
T cd04621          81 LVAED----IMT-EEIITVSPNDDVVDAAKLMLEANISGLPVVDN--DNIVGVITKTDICR  134 (135)
T ss_pred             ccHHH----hcC-CCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence            46777    575 78889999999999999999999999999986  89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.44  E-value=2.3e-12  Score=102.38  Aligned_cols=112  Identities=16%  Similarity=0.285  Sum_probs=94.4

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++++++++.++++.|.+.++..+||+|++ ++++|+++..|+.+.+.+...      ....++.+    +|. .++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~------~~~~~v~~----~~~-~~~~   69 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSL------YDLVVASD----IMT-KPPV   69 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccc------cccEEHHH----hcc-CCCc
Confidence            47789999999999999998899999999984 799999999999887644321      01246777    475 7889


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++.+++++.++++.|.+.+.+.+||+++..|+++|+++..|++.
T Consensus        70 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          70 VVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             EEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            99999999999999999999999999732488999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.43  E-value=2.9e-12  Score=101.63  Aligned_cols=109  Identities=20%  Similarity=0.362  Sum_probs=92.5

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++++++++.++.+.|.+++.+++||+|+  ++++|+++..++++.+......      ...++.+    +|. .+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~------~~~~i~~----~~~-~~~~   68 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLD------PDTPVSE----VMT-APPI   68 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCC------ccCCHHH----HhC-CCCe
Confidence            4778999999999999999888999999986  5999999999998765432110      2345667    465 7888


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++++++++.++++.|.+++.+++||+++  |+++|+||.+||++
T Consensus        69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          69 TIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             EECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            9999999999999999999999999987  89999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=2.5e-12  Score=105.05  Aligned_cols=118  Identities=22%  Similarity=0.363  Sum_probs=93.8

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch-------hhhhccCcccccccCc
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-------FDIIASQPISDLGLPF  288 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~-------l~~l~~~~v~~L~~~~  288 (351)
                      ++.++++++++.++++.|.+.+.+.+||+|++ ++++|++|..|+.+.+........       .......++.+    +
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~   76 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD----A   76 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH----H
Confidence            36789999999999999999999999999984 899999999999876532110000       01112345667    5


Q ss_pred             cCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeC-CCCeEEEEEeHHHHHH
Q 018713          289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIRH  339 (351)
Q Consensus       289 m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~-~~g~liGiIt~~DIl~  339 (351)
                      |. .+++++.+++++.++++.|.+++...+||++. ++|+++|+||.+||++
T Consensus        77 ~~-~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          77 MS-SPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             hc-CCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            75 78899999999999999999999999999842 2689999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.43  E-value=3.3e-12  Score=101.08  Aligned_cols=109  Identities=17%  Similarity=0.331  Sum_probs=93.6

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++++++++.++++.|.+.+.+.+||+|+  ++++|+++..|++++..+...       ...++.+    +|. .+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~-------~~~~v~~----~~~-~~~~   67 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPD-------LQTPVGE----VMS-SPLL   67 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCC-------CCcCHHH----hcC-CCce
Confidence            3678999999999999999888999999986  589999999999887754321       2345667    465 7888


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++++++++.++++.|.+.+.+.+||+|+ +|+++|+|+.+||++
T Consensus        68 ~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~  110 (111)
T cd04611          68 TVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ  110 (111)
T ss_pred             EECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence            9999999999999999999999999998 899999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.43  E-value=8.4e-13  Score=130.97  Aligned_cols=173  Identities=14%  Similarity=0.200  Sum_probs=136.0

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHH-----cCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSE-----CNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA  115 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~-----~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~  115 (351)
                      +...++.++|.   .+++++++++|+.+|++.|.+     +++..+||+|+++        +++|+|+..|++.      
T Consensus       128 ~~e~tvg~iMt---~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~--------~l~GvV~l~dLl~------  190 (449)
T TIGR00400       128 YSDDSAGRIMT---IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESK--------HLKGVLSIRDLIL------  190 (449)
T ss_pred             CCcchHHHhCc---CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCC--------eEEEEEEHHHHhc------
Confidence            34567888886   689999999999999999976     5678899998653        8999999888761      


Q ss_pred             HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhh
Q 018713          116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL  195 (351)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~  195 (351)
                                                                                                      
T Consensus       191 --------------------------------------------------------------------------------  190 (449)
T TIGR00400       191 --------------------------------------------------------------------------------  190 (449)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhh
Q 018713          196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI  275 (351)
Q Consensus       196 ~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~  275 (351)
                         .....+++++|+    +++.++++++++.++++.|.++++..+||+|++ |+++|+||.+|+++.+.+..       
T Consensus       191 ---a~~~~~v~~im~----~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~~-------  255 (449)
T TIGR00400       191 ---AKPEEILSSIMR----SSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSEA-------  255 (449)
T ss_pred             ---CCCCCcHHHHhC----CCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhhh-------
Confidence               012356899998    458899999999999999999999999999984 89999999999999885432       


Q ss_pred             hccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713          276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (351)
Q Consensus       276 l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l  341 (351)
                           .++    +|. ...++..+++.+.+++..|.+++..+++|.     .+.|+++ ..++..+
T Consensus       256 -----~ed----~~~-~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~-----~~~~~~t-~~ii~~f  305 (449)
T TIGR00400       256 -----TED----FYM-IAAVKPLDDSYFDTSILVMAKNRIIWLLVL-----LVSSTFT-ATIISNY  305 (449)
T ss_pred             -----HHH----HHH-hcCCCCCcchhhhchHHHHHHhccchHHHH-----HHHHHHH-HHHHHHH
Confidence                 133    243 333344456788999999999999988875     2567777 6666554

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.43  E-value=1.3e-12  Score=106.73  Aligned_cols=114  Identities=16%  Similarity=0.167  Sum_probs=93.1

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      .+++++++++|+.+|++.|.++++..+||+|+++        +++|+++..|++..+.+.                    
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~--------~~~Gii~~~dl~~~~~~~--------------------   53 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESG--------KILGMVTLGNLLSSLSSG--------------------   53 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC--------CEEEEEEHHHHHHHHHHh--------------------
Confidence            3678999999999999999999999999998753        799999999988433211                    


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                     ......++.++|.    
T Consensus        54 ---------------------------------------------------------------~~~~~~~v~~im~----   66 (124)
T cd04608          54 ---------------------------------------------------------------KVQPSDPVSKALY----   66 (124)
T ss_pred             ---------------------------------------------------------------ccCCCCcHHHHhh----
Confidence                                                                           1133468999999    


Q ss_pred             CCcEEecCCCCHHHHHHHHH---------hCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713          215 APFLPVATDDSMLSVLLLLS---------KYRLRNVPIIEPGTPDIKNYITQSAVVQGL  264 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~---------~~~~~~vpVvd~~~g~liGiIt~~dil~~l  264 (351)
                      +++.++.+++++.++.+++.         ..+.+++||+++ +|+++|+||.+|+++++
T Consensus        67 ~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          67 KQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             ccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc-ccceEEEEehhHhhhhC
Confidence            56999999999999999653         335778888887 48999999999998763

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.42  E-value=1.5e-12  Score=129.24  Aligned_cols=122  Identities=17%  Similarity=0.229  Sum_probs=105.8

Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCc
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~  280 (351)
                      ...++.++|.    .++.++++++++.++++.|.+++++.+||+|+ +++++|+||.+|+...     .       ...+
T Consensus        87 ~~VKv~~iMi----~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~~~-----~-------~~~~  149 (479)
T PRK07807         87 AWVKSRDLVF----DTPVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCAGV-----D-------RFTQ  149 (479)
T ss_pred             hhcccccccc----cCCeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHhcC-----c-------cCCC
Confidence            3456678898    56999999999999999999999999999997 4899999999998422     0       1245


Q ss_pred             ccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE  345 (351)
Q Consensus       281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~  345 (351)
                      +.+    +|+ .+++++++++++.+|++.|.+++.+.+||+|+ +|+++|+||.+||++....+.
T Consensus       150 V~d----iMt-~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~~~~~  208 (479)
T PRK07807        150 VRD----VMS-TDLVTLPAGTDPREAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRATIYTP  208 (479)
T ss_pred             HHH----hcc-CCceEECCCCcHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhCCc
Confidence            778    586 89999999999999999999999999999998 899999999999999876653

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.42  E-value=4.5e-12  Score=100.67  Aligned_cols=110  Identities=17%  Similarity=0.247  Sum_probs=92.9

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      +++++++++++.++++.|.+.+...++|+|+  ++++|+++..|+++.+.+...      ....++.+    +|. .++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~------~~~~~i~~----~~~-~~~~   68 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGL------PSSTPVGE----IAT-FPLI   68 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCC------CCCCCHHH----HhC-CCcE
Confidence            3678899999999999999888999999986  489999999999887643221      02445777    475 7889


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  340 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~  340 (351)
                      .+++++++.++++.|.+++...+||+++  |+++|+||..|++++
T Consensus        69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~~  111 (111)
T cd04589          69 TVDPDDFLFNALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLSF  111 (111)
T ss_pred             EECCCCcHHHHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhcC
Confidence            9999999999999999999999999986  899999999999763

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.42  E-value=1.7e-12  Score=107.16  Aligned_cols=117  Identities=21%  Similarity=0.409  Sum_probs=94.5

Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCC---chhh-------------hhcc
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR---DWFD-------------IIAS  278 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~---~~l~-------------~l~~  278 (351)
                      .++.++.+++++.++++.|.+++.+++||+|+ +++++|+++..|+++........   .+..             ....
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            45788999999999999999999999999998 48999999999998765332100   0000             1123


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      .++.+    +|. .+++.+.+++++.++++.|.+++.+.+||+|.  |+++|+||..|+++
T Consensus        81 ~~v~~----~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~--g~~~Gvit~~di~~  134 (135)
T cd04586          81 RKVAD----VMT-RPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG--GRLVGIVSRADLLR  134 (135)
T ss_pred             CCHHH----HhC-CCceEeCCCCcHHHHHHHHHHcCCCccCEecC--CEEEEEEEhHhhhc
Confidence            45666    475 78899999999999999999999999999984  89999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.42  E-value=4.6e-12  Score=100.34  Aligned_cols=108  Identities=19%  Similarity=0.414  Sum_probs=93.1

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++++++++.++++.|.+.+++.+||+++  ++++|+++..|+++....+.        ...++.+    +|. .++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~--------~~~~v~~----~~~-~~~~   66 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGL--------ELAKVKD----VMT-KDVI   66 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccc--------cccCHHH----Hhc-CCce
Confidence            4778999999999999999999999999986  58999999999998764322        1245666    465 7889


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++++++++.++++.|.+.+.+.+||+++ +|+++|+|+..|+++
T Consensus        67 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~  109 (110)
T cd04588          67 TIDEDEQLYDAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR  109 (110)
T ss_pred             EECCCCCHHHHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence            9999999999999999999999999987 799999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.42  E-value=3.7e-12  Score=100.80  Aligned_cols=109  Identities=26%  Similarity=0.409  Sum_probs=92.4

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++.+++++.++++.|.+.+...+||+|+  ++++|+++..|+.+.......       ...++.+    +|. ++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~-------~~~~~~~----~~~-~~~~   67 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGRE-------ATVLVGD----VMT-RDPV   67 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcc-------cccCHHH----hcc-CCCe
Confidence            4778999999999999999888999999987  589999999999876643211       1123455    465 7889


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++.+++++.++++.|.+++.+++||+++ +|+++|+||..||++
T Consensus        68 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~  110 (111)
T cd04612          68 TASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR  110 (111)
T ss_pred             EECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence            9999999999999999999999999997 899999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.41  E-value=5.4e-12  Score=100.03  Aligned_cols=108  Identities=26%  Similarity=0.462  Sum_probs=92.8

Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v  294 (351)
                      +++.+++.++++.++.+.|.+.+..++||+|+  ++++|+++..|+.+.+....        ...++.+    +|. +++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~--------~~~~~~~----~~~-~~~   66 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL--------GHAPVKD----YMS-TDV   66 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc--------ccCcHHH----Hhc-CCC
Confidence            45788999999999999999888999999987  58999999999987663211        2346777    575 788


Q ss_pred             eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +++.+++++.+++.+|.+++.+++||+++  |+++|+||..|+++
T Consensus        67 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvvt~~di~~  109 (110)
T cd04595          67 VTVPPDTPLSEVQELMVEHDIGRVPVVED--GRLVGIVTRTDLLR  109 (110)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCeeEEEeC--CEEEEEEEhHHhhc
Confidence            89999999999999999999999999985  89999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.41  E-value=2.8e-12  Score=127.24  Aligned_cols=123  Identities=14%  Similarity=0.275  Sum_probs=105.9

Q ss_pred             CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHh-----CCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchh
Q 018713          199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSK-----YRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF  273 (351)
Q Consensus       199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~-----~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l  273 (351)
                      .+...+++++|+    .++.++++++++.++++.|.+     ++...+||+|+ +++++|+|+.+|++...         
T Consensus       127 ~~~e~tvg~iMt----~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a~---------  192 (449)
T TIGR00400       127 SYSDDSAGRIMT----IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLILAK---------  192 (449)
T ss_pred             CCCcchHHHhCc----CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhcCC---------
Confidence            478899999999    559999999999999999975     45678899987 47999999999986421         


Q ss_pred             hhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       274 ~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                         ...++++    +|. ++++++++++++.++++.|.+++...+||||+ +|+++|+||.+|+++.+.+.
T Consensus       193 ---~~~~v~~----im~-~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~~~  254 (449)
T TIGR00400       193 ---PEEILSS----IMR-SSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQSE  254 (449)
T ss_pred             ---CCCcHHH----HhC-CCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHHhh
Confidence               2346777    586 77889999999999999999999999999998 89999999999999887654

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.41  E-value=3.8e-12  Score=101.20  Aligned_cols=111  Identities=17%  Similarity=0.260  Sum_probs=92.6

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++.+++++.++++.|.+++.+.+||+++  ++++|+|+..|++..+.... ...    ...++.+    +|. .++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~-~~~----~~~~v~~----i~~-~~~~   69 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQG-LDP----ESTLVER----VMT-PNPV   69 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcC-CCc----CcCCHHH----hcC-CCCe
Confidence            4778999999999999999888999999986  58999999999986554321 100    1246777    475 7788


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++.+++++.++++.|.+++.+++||+++ +|+++|+||..|++.
T Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~  112 (113)
T cd04587          70 CATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH  112 (113)
T ss_pred             EEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence            9999999999999999999999999998 799999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.41  E-value=5.3e-12  Score=101.46  Aligned_cols=116  Identities=22%  Similarity=0.387  Sum_probs=94.3

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchh-h---hhccCcccccccCccCC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF-D---IIASQPISDLGLPFMSS  291 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l-~---~l~~~~v~~L~~~~m~~  291 (351)
                      ++.++++++++.++++.|.+.+...+||+|+  |+++|+++..++.+........... +   .....++.+    +|. 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-   74 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD----IMT-   74 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH----hcc-
Confidence            4678999999999999999989999999986  5999999999998876432110000 0   012345666    475 


Q ss_pred             CCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       292 ~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +++.++.+++++.++++.|.+++.+.+||+++ +|+++|+||..||++
T Consensus        75 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~  121 (122)
T cd04585          75 RDPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR  121 (122)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence            78899999999999999999999999999997 899999999999985

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.41  E-value=2e-12  Score=119.37  Aligned_cols=119  Identities=19%  Similarity=0.272  Sum_probs=108.6

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      ..|.|+|+|.  ....++.+++++.+..++-.+.+.+++||+|. ..+++|++|.+|+....            ...+++
T Consensus       188 ~~Vedi~~P~--~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~------------~~t~ie  252 (432)
T COG4109         188 ITVEDIMTPL--EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKK------------PSTTIE  252 (432)
T ss_pred             eeHHHhcccc--ccceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCC------------CCccHH
Confidence            5899999977  88899999999999999999999999999998 58999999999986443            456788


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~  342 (351)
                      +    +|+ ++++++.+.+++..+.++|.-.++.-+||+|+ +.+++|+||++|+++.+.
T Consensus       253 K----VMt-knp~tv~~~tsVAsvaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~lq  306 (432)
T COG4109         253 K----VMT-KNPITVRAKTSVASVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             H----Hhc-cCCeeecccchHHHHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHHHH
Confidence            8    797 99999999999999999999999999999999 999999999999998764

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=6.3e-12  Score=100.45  Aligned_cols=112  Identities=20%  Similarity=0.322  Sum_probs=93.2

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++.+++++.+|++.|.++++..+||+|++.       ++++|+++..|++.++....                    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------~~~~G~v~~~dl~~~~~~~~--------------------   54 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRE-------SDAYGIVTMRDILKKVVAEG--------------------   54 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCC-------CcEEEEEehHHHHHHHHhCC--------------------
Confidence            577899999999999999999999999998641       28999999999985432210                    


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    ......++.++|.    .
T Consensus        55 --------------------------------------------------------------~~~~~~~v~~~~~----~   68 (114)
T cd04630          55 --------------------------------------------------------------RDPDRVNVYEIMT----K   68 (114)
T ss_pred             --------------------------------------------------------------CCCCccCHHHHhc----C
Confidence                                                                          1123357889997    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++++++++.++++.|.+++.+.+||+|+  |+++|+|+..|+++
T Consensus        69 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~  113 (114)
T cd04630          69 PLISVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFL  113 (114)
T ss_pred             CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence            6999999999999999999999999999986  58999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.41  E-value=2.5e-12  Score=122.61  Aligned_cols=124  Identities=9%  Similarity=0.114  Sum_probs=101.8

Q ss_pred             ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713           42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA  121 (351)
Q Consensus        42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~  121 (351)
                      ..+++.++|.. .++++++++++|+.+|++.|.++++..+||+|+++        +++|+|+..|+...+. .       
T Consensus       200 ~~~~V~dim~~-~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g--------~lvGivt~~Dl~~~~~-~-------  262 (326)
T PRK10892        200 LLLRVSDIMHT-GDEIPHVSKTASLRDALLEITRKNLGMTVICDDNM--------KIEGIFTDGDLRRVFD-M-------  262 (326)
T ss_pred             ccCcHHHHhCC-CCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCC--------cEEEEEecHHHHHHHh-c-------
Confidence            56788999962 23899999999999999999999988888888653        8999999999873210 0       


Q ss_pred             hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713          122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK  201 (351)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~  201 (351)
                                                                                                 .....
T Consensus       263 ---------------------------------------------------------------------------~~~~~  267 (326)
T PRK10892        263 ---------------------------------------------------------------------------GIDLR  267 (326)
T ss_pred             ---------------------------------------------------------------------------CCCcc
Confidence                                                                                       01123


Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG  263 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~  263 (351)
                      ..+|.++|+    .++.++.+++++.++++.|.+++++++||+++  ++++|+||++|++++
T Consensus       268 ~~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~  323 (326)
T PRK10892        268 QASIADVMT----PGGIRVRPGILAVDALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA  323 (326)
T ss_pred             cCCHHHhcC----CCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence            467999999    56999999999999999999999999999985  589999999999764

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=4.3e-12  Score=103.52  Aligned_cols=112  Identities=17%  Similarity=0.203  Sum_probs=88.5

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH-----hhcCCCCchhhhhccCcccccccCccC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG-----LEGCKGRDWFDIIASQPISDLGLPFMS  290 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~-----l~~~~~~~~l~~l~~~~v~~L~~~~m~  290 (351)
                      ++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++..|+.+.     ...+..     .....++.+    +|.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~-----~~~~~~v~~----im~   71 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGI-----SRSELTVAD----VMT   71 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCC-----CchheEHHH----hcC
Confidence            37789999999999999998999999999974 799999999999852     211100     012345777    475


Q ss_pred             CCCceE--E----cCCCcHHHHHHHHHhcCCCeeEEEeCCC-CeEEEEEeHHHHHH
Q 018713          291 SDEVIT--I----QSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRH  339 (351)
Q Consensus       291 ~~~v~~--V----~~~~~l~~al~~m~~~~~~~lpVvd~~~-g~liGiIt~~DIl~  339 (351)
                       ++...  +    .+++++.++++.|.+++.+.+||+|+ + |+++|+||.+||++
T Consensus        72 -~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-~~~~~~G~it~~di~~  125 (126)
T cd04640          72 -PKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-EHHQIRGIISTSDIAR  125 (126)
T ss_pred             -chhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-CCCEEEEEEeHHHHhh
Confidence             44333  3    36899999999999999999999998 6 79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.40  E-value=4.2e-12  Score=101.42  Aligned_cols=111  Identities=20%  Similarity=0.285  Sum_probs=89.7

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcC-ceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECN-ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~-i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      ++.++++++++.+|++.|.+++ ...+||+|+++        +++|+|+..||+.....                     
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~dl~~~~~~---------------------   52 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEG--------RYVGIISLADLRAIPTS---------------------   52 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCC--------cEEEEEEHHHHHHHHHh---------------------
Confidence            5678999999999999998775 89999998743        79999999998842110                     


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                      .....++.++|.+.  
T Consensus        53 ----------------------------------------------------------------~~~~~~v~~~~~~~--   66 (114)
T cd04801          53 ----------------------------------------------------------------QWAQTTVIQVMTPA--   66 (114)
T ss_pred             ----------------------------------------------------------------hccccchhhhhccc--
Confidence                                                                            01234677888633  


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++.++.+++++.++++.|.+++.+++||+|+ +++++|+|+.+|+++
T Consensus        67 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~  113 (114)
T cd04801          67 AKLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR  113 (114)
T ss_pred             ccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence            34668999999999999999999999999987 379999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.40  E-value=6.2e-12  Score=101.77  Aligned_cols=122  Identities=21%  Similarity=0.325  Sum_probs=96.2

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      ++++++++++++.++++.|.++++..+||+++++        +++|+|+..|++.++......                 
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~--------~~~Giv~~~~l~~~~~~~~~~-----------------   56 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDR--------RLVGIVTQRDLLRHARPDGRR-----------------   56 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCC--------CEEEEEEHHHHHhhhcccccc-----------------
Confidence            5788999999999999999999999999998743        899999999998543211000                 


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                            .....+.  ......++.++|.    
T Consensus        57 ------------------------------------------------------~~~~~~~--~~~~~~~i~~~~~----   76 (124)
T cd04600          57 ------------------------------------------------------PLRGRLR--GRDKPETVGDIMS----   76 (124)
T ss_pred             ------------------------------------------------------hhhhhhh--cccccccHHHhcc----
Confidence                                                                  0000000  1134457899998    


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||..|+++
T Consensus        77 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~  123 (124)
T cd04600          77 PPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA  123 (124)
T ss_pred             CCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence            55999999999999999999999999999997 489999999999874

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=6.2e-12  Score=99.97  Aligned_cols=110  Identities=21%  Similarity=0.411  Sum_probs=91.7

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH-HhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-GLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~-~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v  294 (351)
                      ++.++.+++++.++++.|.+++.+.+||+|+  |+++|+++..|++. .+..+..      ....++.+    +|. ..+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~------~~~~~~~~----~~~-~~~   68 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRD------PDTTTVGD----VMT-RGV   68 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCC------cccCCHHH----hcc-CCc
Confidence            4778999999999999999999999999986  69999999999873 3322211      01224777    475 788


Q ss_pred             eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      .++.+++++.++++.|...+.+++||+++ +|+++|+|+..|+++
T Consensus        69 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~  112 (113)
T cd04622          69 VTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR  112 (113)
T ss_pred             cEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            89999999999999999999999999997 799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=7.8e-12  Score=99.14  Aligned_cols=109  Identities=19%  Similarity=0.259  Sum_probs=91.6

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.+.+...+||+++++        +++|+++..++..++...                     
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~--------~~~G~v~~~~l~~~~~~~---------------------   52 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDG--------HLVGLLTRDDLIRALAEG---------------------   52 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCC--------cEEEEeeHHHHHHHHHhc---------------------
Confidence            567899999999999999999999999998743        799999999987432111                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                      ....++.++|.    .
T Consensus        53 ----------------------------------------------------------------~~~~~v~~~~~----~   64 (111)
T cd04639          53 ----------------------------------------------------------------GPDAPVRGVMR----R   64 (111)
T ss_pred             ----------------------------------------------------------------CCCCcHHHHhc----C
Confidence                                                                            12246788887    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++...+||++++ |+++|++|..|+.+
T Consensus        65 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~  110 (111)
T cd04639          65 DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE  110 (111)
T ss_pred             CCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence            58899999999999999999999999999873 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.39  E-value=2.3e-11  Score=120.57  Aligned_cols=124  Identities=17%  Similarity=0.209  Sum_probs=105.5

Q ss_pred             HHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHH
Q 018713           38 TAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAEL  117 (351)
Q Consensus        38 ~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~  117 (351)
                      ...+..+++.+++.   ++++++.+++|+.+|++.|.++++..+||+|++         +++|+|+..|+..        
T Consensus        82 ae~v~~VKv~eim~---~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~g---------klvGIVT~rDL~~--------  141 (475)
T TIGR01303        82 KQTVAFVKSRDLVL---DTPITLAPHDTVSDAMALIHKRAHGAAVVILED---------RPVGLVTDSDLLG--------  141 (475)
T ss_pred             HHHHhhcchhhccc---cCCeEECCCCCHHHHHHHHHhcCCeEEEEEECC---------EEEEEEEHHHhhc--------
Confidence            34567788888876   678999999999999999999999999999853         7999999988641        


Q ss_pred             HhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhc
Q 018713          118 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE  197 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~  197 (351)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (475)
T TIGR01303       142 --------------------------------------------------------------------------------  141 (475)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                       .....++.++|+    .+++++++++++.+++++|.+++++.+||+|++ ++++|+||++||++.....
T Consensus       142 -~~~~~~V~dIMt----~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       142 -VDRFTQVRDIMS----TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT  205 (475)
T ss_pred             -CCCCCCHHHHcc----CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC
Confidence             011256899999    569999999999999999999999999999974 7999999999999877543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=4.6e-12  Score=102.25  Aligned_cols=117  Identities=21%  Similarity=0.330  Sum_probs=93.8

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch---hhhhccCcccccccCccCCC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW---FDIIASQPISDLGLPFMSSD  292 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~---l~~l~~~~v~~L~~~~m~~~  292 (351)
                      ++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+++..|+++..........   .......++.+    +|. .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~   75 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK----IMS-T   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----Hhc-C
Confidence            4778999999999999999889999999987 4899999999999875321100000   00012345666    465 7


Q ss_pred             CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       293 ~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +++.+..++++.+++..|.+++.+.+||+++ +|+++|++|..|+++
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~  121 (122)
T cd04635          76 PVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLK  121 (122)
T ss_pred             CCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhc
Confidence            7889999999999999999999999999998 799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=9.2e-12  Score=98.90  Aligned_cols=109  Identities=17%  Similarity=0.331  Sum_probs=90.2

Q ss_pred             cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceE
Q 018713          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (351)
Q Consensus       217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~  296 (351)
                      +.++.+++++.++++.|.+++.+.++|.++  |+++|+++..|+++.+.+.. ..    ....++.+    +|. .++.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~-~~----~~~~~v~~----~~~-~~~~~   70 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHG-AG----VLDTTVRA----IMN-PEPIV   70 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcC-Cc----hhcCCHHH----HhC-CCCeE
Confidence            678999999999999998888877777654  69999999999998775321 00    12346777    475 67889


Q ss_pred             EcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       297 V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +.+++++.+++++|.+++...+||+++  |+++|+||.+||+.
T Consensus        71 v~~~~~l~~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~  111 (112)
T cd04625          71 ASPDDSIDEVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK  111 (112)
T ss_pred             ECCCCCHHHHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence            999999999999999999999999985  89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.38  E-value=4.4e-12  Score=100.55  Aligned_cols=103  Identities=17%  Similarity=0.340  Sum_probs=86.8

Q ss_pred             ecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713          220 VATDDSMLSVLLLLSKYR-----LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (351)
Q Consensus       220 v~~~~sl~ea~~~m~~~~-----~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v  294 (351)
                      +.+++++.++++.|.+++     +..+||+|++ ++++|+++.+++++.-            ...++.+    +|. .++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~------------~~~~v~~----~~~-~~~   63 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD------------PDTPVSD----IMD-TDV   63 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC------------CcchHHH----HhC-CCC
Confidence            578899999999998766     4689999874 7999999999987521            1235666    465 778


Q ss_pred             eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (351)
Q Consensus       295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l  341 (351)
                      ..+.+++++.++++.|.+++.+.+||+|+ +|+++|+||..|+++.+
T Consensus        64 ~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~~  109 (109)
T cd04606          64 ISVSADDDQEEVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDVI  109 (109)
T ss_pred             eEEcCCCCHHHHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhhC
Confidence            89999999999999999999999999997 79999999999998753

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.38  E-value=1.1e-11  Score=99.11  Aligned_cols=112  Identities=21%  Similarity=0.299  Sum_probs=91.7

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++.+++++.+|++.|.+.++..+||+|+++        +++|+++..|+...+...                     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~dl~~~~~~~---------------------   52 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDG--------GVVGIITLPDLLRALEAD---------------------   52 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCC--------CEEEEEEHHHHHHHHhcc---------------------
Confidence            356789999999999999999999999998753        899999999988432110                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    ......++.++|.    .
T Consensus        53 --------------------------------------------------------------~~~~~~~~~~~~~----~   66 (115)
T cd04593          53 --------------------------------------------------------------EAGEPSAVDEVAT----P   66 (115)
T ss_pred             --------------------------------------------------------------cccccccHHHhcc----C
Confidence                                                                          1112345778887    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~-~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++...+||+|++ +|+++|+||.+|+++
T Consensus        67 ~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          67 PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            58999999999999999999999999999873 268999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1.3e-11  Score=98.06  Aligned_cols=110  Identities=23%  Similarity=0.353  Sum_probs=92.1

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++++++++.++++.|.+.+.+.+||+|++  +++|+++..|+++.+......     ....++.+    +|. +++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~G~v~~~dl~~~~~~~~~~-----~~~~~~~~----~~~-~~~~   69 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE--KPVGIITERDLVKKVVSRNLK-----PREVPVGE----VMS-TPLI   69 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEEHHHHHHHHhhccCC-----cccCCHHH----hcC-CCcE
Confidence            46789999999999999998889999999863  899999999999876432100     02345677    475 7888


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++.+++++.++++.|.+++.+.+||+|+ + +++|+|+..|++.
T Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~~  111 (112)
T cd04802          70 TIDPNASLNEAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIVM  111 (112)
T ss_pred             EECCCCCHHHHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhhc
Confidence            9999999999999999999999999997 4 9999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.38  E-value=6.3e-12  Score=128.60  Aligned_cols=131  Identities=13%  Similarity=0.217  Sum_probs=108.7

Q ss_pred             HHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHH
Q 018713           38 TAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAEL  117 (351)
Q Consensus        38 ~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~  117 (351)
                      .+.+..++++++|.   +++.++++++++.++++.|.+++...+||+|+++        +++|+|+..|+...+...   
T Consensus       441 ~~~L~~~~V~dim~---~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g--------~lvGiVt~~dL~~~l~~~---  506 (574)
T PRK01862        441 RERLRTTQMRELIQ---PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDG--------RFRGAVALKDITSDLLDK---  506 (574)
T ss_pred             hhHHhhCcHHHHhc---CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCC--------eEEEEEEHHHHHHHhhcc---
Confidence            35678899999997   5678899999999999999999999999999753        899999999987422110   


Q ss_pred             HhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhc
Q 018713          118 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE  197 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~  197 (351)
                                                                                                      
T Consensus       507 --------------------------------------------------------------------------------  506 (574)
T PRK01862        507 --------------------------------------------------------------------------------  506 (574)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCC-CCEEEEEeHHHHHHHhhc
Q 018713          198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT-PDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~-g~liGiIt~~dil~~l~~  266 (351)
                      ......++.++|+    .++.++++++++.++++.|.+++.+.+||+|+++ ++++|+||++|+++.+.+
T Consensus       507 ~~~~~~~v~dim~----~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        507 RDTTDKTAADYAH----TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             cccccchHHHhcc----CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            1122357889998    5588999999999999999999999999998742 479999999999998743

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1.5e-11  Score=97.55  Aligned_cols=112  Identities=24%  Similarity=0.370  Sum_probs=92.9

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      ++++++.+++++.++++.|.++++..+||+|+++        +++|+++..|++.++....                   
T Consensus         1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~--------~~~Giv~~~~l~~~~~~~~-------------------   53 (113)
T cd04623           1 RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDGG--------RLVGIFSERDIVRKVALRG-------------------   53 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEECCCC--------CEEEEEehHHHHHHHhhcC-------------------
Confidence            3577899999999999999999999999998753        8999999999885432110                   


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                     ......++.++|.    
T Consensus        54 ---------------------------------------------------------------~~~~~~~~~~~~~----   66 (113)
T cd04623          54 ---------------------------------------------------------------ASALDTPVSEIMT----   66 (113)
T ss_pred             ---------------------------------------------------------------CCccccCHHHhcC----
Confidence                                                                           0112357888887    


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++.++.+++++.++++.|.+.+.+.+||+++  |+++|+||.+|+++
T Consensus        67 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  112 (113)
T cd04623          67 RNVITVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK  112 (113)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence            56899999999999999999999999999986  58999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.4e-11  Score=97.94  Aligned_cols=111  Identities=20%  Similarity=0.409  Sum_probs=92.3

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++.+++++.+|++.|.++++..+||+|+++        +++|+++..|+.......                     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~--------~~~G~v~~~dl~~~~~~~---------------------   52 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKK--------RLVGIITRYDVLSYALES---------------------   52 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCC--------CEEEEEEHHHHHHhhhhh---------------------
Confidence            357889999999999999999999999998753        799999999987421110                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    ..+...++.++|.    .
T Consensus        53 --------------------------------------------------------------~~~~~~~i~~~~~----~   66 (113)
T cd04615          53 --------------------------------------------------------------EELKDAKVREVMN----S   66 (113)
T ss_pred             --------------------------------------------------------------hhhcCCcHHHhcc----C
Confidence                                                                          1133457888888    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++..|+++
T Consensus        67 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~  112 (113)
T cd04615          67 PVITIDANDSIAKARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR  112 (113)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence            58999999999999999999999999999884 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.37  E-value=1.2e-11  Score=97.84  Aligned_cols=105  Identities=16%  Similarity=0.186  Sum_probs=90.2

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++++++++.+|++.|.+++...+||+|+++        +++|+++..++...                         
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~~l~~~-------------------------   49 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKN--------KVVGIVTSKDVAGK-------------------------   49 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCC--------eEEEEecHHHHhcc-------------------------
Confidence            578899999999999999999999999998643        89999998887610                         


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                      ....++.++|.    .
T Consensus        50 ----------------------------------------------------------------~~~~~v~~~~~----~   61 (108)
T cd04596          50 ----------------------------------------------------------------DPDTTIEKVMT----K   61 (108)
T ss_pred             ----------------------------------------------------------------cccccHHHHhc----C
Confidence                                                                            11246788887    4


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++++++++.++++.|.+++.+.+||++++ |+++|++|..|+++
T Consensus        62 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~  107 (108)
T cd04596          62 NPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK  107 (108)
T ss_pred             CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence            58899999999999999999999999999974 79999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.37  E-value=5.6e-12  Score=116.73  Aligned_cols=113  Identities=21%  Similarity=0.350  Sum_probs=98.3

Q ss_pred             CchHhhhhccCCCC-cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713          203 TTVRSIIKSYRWAP-FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (351)
Q Consensus       203 ~~V~dim~~~~~~~-~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v  281 (351)
                      .+|+++|.    ++ +.++++++++.++++.|.+.+++.+||+|++ |+++|+++..|+++.+.....       ...++
T Consensus       155 ~~v~~im~----~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~-------~~~~v  222 (268)
T TIGR00393       155 VKVKDLMQ----TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGS-------LKSEV  222 (268)
T ss_pred             hhHHHHhC----CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCc-------ccCcH
Confidence            68999998    55 8899999999999999998899999999984 899999999999887643211       34568


Q ss_pred             cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEe
Q 018713          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS  333 (351)
Q Consensus       282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt  333 (351)
                      .+    +|. ++++++.+++++.+|++.|.+++.+.+||+|+ +|+++|+|+
T Consensus       223 ~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~GvI~  268 (268)
T TIGR00393       223 RD----FMT-LGPKTFKLDALLLEALEFLERRKITSLVVVDD-HNKVLGVLH  268 (268)
T ss_pred             HH----hCC-CCCeEECCCCcHHHHHHHHHHcCCcEEEEECC-CCeEEEEEC
Confidence            88    575 78889999999999999999999999999998 889999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.37  E-value=1e-11  Score=97.32  Aligned_cols=102  Identities=26%  Similarity=0.410  Sum_probs=88.6

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++.+++++.++++.|.+++.+.+||+|+  ++++|+++..++++..            ...++.+    +|. .++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~------------~~~~~~~----~~~-~~~~   62 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAH------------PNRLVAD----AMT-REVV   62 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhccc------------ccCCHHH----Hcc-CCCE
Confidence            4678999999999999999888999999984  6999999999997642            1234566    475 7888


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR  338 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl  338 (351)
                      ++++++++.++++.|.+++...+||+|+  |+++|+||..|++
T Consensus        63 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~  103 (105)
T cd04599          63 TISPEASLLEAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA  103 (105)
T ss_pred             EECCCCCHHHHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence            9999999999999999999999999996  9999999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.37  E-value=1.2e-11  Score=98.28  Aligned_cols=112  Identities=18%  Similarity=0.315  Sum_probs=93.1

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      +++.++++++++.++++.|.++++..+||+|+++        +++|+++..|+..++...                    
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~G~v~~~~l~~~~~~~--------------------   52 (114)
T cd04613           1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDG--------RLVGIVSLDDIREILFDP--------------------   52 (114)
T ss_pred             CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCC--------CEEEEEEHHHHHHHHhcc--------------------
Confidence            3567899999999999999999999999998753        799999999987432100                    


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                     ......++.++|.    
T Consensus        53 ---------------------------------------------------------------~~~~~~~v~~~~~----   65 (114)
T cd04613          53 ---------------------------------------------------------------SLYDLVVASDIMT----   65 (114)
T ss_pred             ---------------------------------------------------------------cccccEEHHHhcc----
Confidence                                                                           1122367889998    


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCCCEEEEEeHHHHHH
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQ  262 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~-~~g~liGiIt~~dil~  262 (351)
                      .++.++.+++++.++++.|.+.+.+.+||+++ + ++++|+++..|++.
T Consensus        66 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~~Gvvt~~di~~  113 (114)
T cd04613          66 KPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDP-GKLLGILSRSDLLS  113 (114)
T ss_pred             CCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCC-CEEEEEEEhHHhhc
Confidence            55899999999999999999999999999986 4 68999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.37  E-value=6e-12  Score=119.67  Aligned_cols=123  Identities=12%  Similarity=0.147  Sum_probs=102.6

Q ss_pred             cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713           43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF  122 (351)
Q Consensus        43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~  122 (351)
                      .++|.++|... +++.++++++|+.+|++.|.+++...+||+|+++        +++|+|+..|+..++..         
T Consensus       196 ~~~V~~im~~~-~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g--------~~iG~vt~~dl~~~~~~---------  257 (321)
T PRK11543        196 LNKVHHLMRRD-DAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQ--------QVQGVFTDGDLRRWLVG---------  257 (321)
T ss_pred             HhHHHHHhccC-CCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCC--------cEEEEecHHHHHHHHhC---------
Confidence            68999999721 2389999999999999999999999999999754        89999998887743210         


Q ss_pred             ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713          123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS  202 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~  202 (351)
                                                                                                 .....
T Consensus       258 ---------------------------------------------------------------------------~~~~~  262 (321)
T PRK11543        258 ---------------------------------------------------------------------------GGALT  262 (321)
T ss_pred             ---------------------------------------------------------------------------CCCcC
Confidence                                                                                       11123


Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG  263 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~  263 (351)
                      .++.++|+    .++.++.+++++.++++.|.+++..++||+|++ |+++|+||+.|+++.
T Consensus       263 ~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~  318 (321)
T PRK11543        263 TPVNEAMT----RGGTTLQAQSRAIDAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA  318 (321)
T ss_pred             CcHHHhcC----CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence            56889998    558999999999999999999999999999974 799999999999754

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.36  E-value=1.2e-11  Score=99.01  Aligned_cols=107  Identities=18%  Similarity=0.321  Sum_probs=88.5

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE  293 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~  293 (351)
                      ++.++.+++++.++++.|.+++...+||+|++  +|+++|+++..|++....           ...++.+    +|. ..
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-----------~~~~v~~----~~~-~~   66 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-----------SETPLSE----VMT-PR   66 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-----------cCCCHHH----hcC-CC
Confidence            46789999999999999998889999999861  279999999999864321           1234666    464 56


Q ss_pred             ceEEcC--CCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          294 VITIQS--NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       294 v~~V~~--~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ...+..  ++++.++++.|.+++...+||+++ +|+++|+||.+||++
T Consensus        67 ~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~  113 (114)
T cd04602          67 EVLVVAPTGITLEEANEILRESKKGKLPIVND-DGELVALVTRSDLKK  113 (114)
T ss_pred             ceEEECCCCCCHHHHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence            667766  999999999999999999999997 899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.36  E-value=1.1e-11  Score=97.87  Aligned_cols=108  Identities=20%  Similarity=0.330  Sum_probs=89.3

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++.+++++.++.+.|.+++.+.+||+|+  ++++|+++..|+.+.+.+....      ...++.+    +|. +++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~------~~~~~~~----~~~-~~~~   68 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAK------FSLPVRE----VMG-EPLP   68 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccc------cCcCHHH----Hhc-CCCc
Confidence            4678999999999999999999999999986  5899999999999887543210      1345666    465 7788


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++++++++.+++++|.+ .. .+||+++ +|+++|+||.+||++
T Consensus        69 ~v~~~~~l~~~~~~~~~-~~-~~~vv~~-~~~~~Gvvt~~di~~  109 (110)
T cd04609          69 TVDPDAPIEELSELLDR-GN-VAVVVDE-GGKFVGIITRADLLK  109 (110)
T ss_pred             eeCCCCcHHHHHHHHHh-CC-ceeEEec-CCeEEEEEeHHHhhc
Confidence            99999999999999988 33 4788987 899999999999975

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=2.1e-11  Score=98.39  Aligned_cols=120  Identities=18%  Similarity=0.328  Sum_probs=94.8

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++.+++++.+|++.|.+.++..+||+++++        +++|+++..+++..+.......                 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~--------~~~G~v~~~~l~~~~~~~~~~~-----------------   56 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDG--------KLVGLLTQRDLLRAALSSLSDN-----------------   56 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCC--------CEEEEEEHHHHHHHhccccccc-----------------
Confidence            577899999999999999999999999998743        8999999999985432110000                 


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                         ....   .   ......++.++|.    .
T Consensus        57 ---------------------------------------------------~~~~---~---~~~~~~~v~~~~~----~   75 (122)
T cd04803          57 ---------------------------------------------------GEES---L---TKERDVPVAEVMK----T   75 (122)
T ss_pred             ---------------------------------------------------cccc---c---ccccCcCHHHhhC----C
Confidence                                                               0000   0   1123467889997    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+.+.+.+||++++ |+++|++|..|+++
T Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~  121 (122)
T cd04803          76 DVLTVTPDTPLREAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR  121 (122)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence            58999999999999999999999999999984 79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=2.3e-11  Score=95.48  Aligned_cols=111  Identities=22%  Similarity=0.390  Sum_probs=93.1

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++.+++++.++++.|.+++.+.+||++++ ++++|+++..|+++.+......      ....+.+    +|. .++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~------~~~~~~~----~~~-~~~~   69 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLD------PLVTVGD----VMT-RDVV   69 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCC------ccccHHH----Hhc-CCce
Confidence            36788999999999999999889999999984 7999999999999887543211      0111344    464 7888


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++.+++++.++++.|.+.+.+.+||+|+ +|+++|+|+..|+++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~  112 (113)
T cd02205          70 TVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILR  112 (113)
T ss_pred             ecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhc
Confidence            9999999999999999999999999998 899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.7e-11  Score=99.36  Aligned_cols=124  Identities=18%  Similarity=0.297  Sum_probs=95.7

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.+++++.++.+|++.|.+++...+||+|++.       ++++|+|+..|+..++.........               
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~-------~~~~G~v~~~dl~~~~~~~~~~~~~---------------   59 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGT-------GKLVGIITATDILKYLGGGEKFNKI---------------   59 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCC-------CEEEEEEEHHHHHHHhhccchhccc---------------
Confidence            567899999999999999999999999998752       2899999999998654322110000               


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                              .         ...        .......++.++|.    .
T Consensus        60 ----------------------------------------~---------~~~--------~~~~~~~~~~~~~~----~   78 (125)
T cd04631          60 ----------------------------------------K---------TGN--------GLEAINEPVRSIMT----R   78 (125)
T ss_pred             ----------------------------------------c---------ccc--------cchhhhcCHHHHhc----C
Confidence                                                    0         000        01123357888887    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG  263 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~  263 (351)
                      ++.++++++++.++++.|.+.+.+.+||++++ |+++|+||..|++++
T Consensus        79 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~~  125 (125)
T cd04631          79 NVITITPDDSIKDAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLKA  125 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhcC
Confidence            59999999999999999999999999999873 799999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.5e-11  Score=97.93  Aligned_cols=112  Identities=21%  Similarity=0.350  Sum_probs=92.6

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.+++...+||+++++        +++|+++..+++..+.....                   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--------~~~G~v~~~~l~~~~~~~~~-------------------   54 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNG--------NLVGFLSEQDCLKQLLESSY-------------------   54 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCC--------eEEEEeehHHHHHHhhhhhh-------------------
Confidence            567899999999999999999999999998753        89999999998854322100                   


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    ......++.++|.    .
T Consensus        55 --------------------------------------------------------------~~~~~~~v~~~~~----~   68 (114)
T cd04629          55 --------------------------------------------------------------HCDGVATVRDIMT----T   68 (114)
T ss_pred             --------------------------------------------------------------ccCCCccHHHHhc----c
Confidence                                                                          0022356888887    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++.+.+||+|+  |+++|+||..|+++
T Consensus        69 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  113 (114)
T cd04629          69 EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR  113 (114)
T ss_pred             CceEECCCCcHHHHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence            5889999999999999999999999999986  58999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.2e-11  Score=99.65  Aligned_cols=115  Identities=30%  Similarity=0.464  Sum_probs=93.2

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch----hhhhccCcccccccCccCC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW----FDIIASQPISDLGLPFMSS  291 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~----l~~l~~~~v~~L~~~~m~~  291 (351)
                      ++.++.+++++.++++.|.+++.+.+||+|+  |+++|+++..++++.+........    ...+...++.+    +|. 
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-   74 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD----IMT-   74 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH----Hcc-
Confidence            4778999999999999999889999999986  599999999999877643211000    00112345666    475 


Q ss_pred             CCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       292 ~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      .++.++.+++++.+++.+|.+.+.+.+||+|+  |+++|+|+..|+++
T Consensus        75 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          75 RPVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             CCceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            78889999999999999999999999999997  89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.4e-11  Score=98.47  Aligned_cols=114  Identities=17%  Similarity=0.283  Sum_probs=90.4

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.++++..+||+|+++        +++|+++..|++.++.....                   
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~--------~~~Giv~~~dl~~~~~~~~~-------------------   54 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEG--------KYVGTISLTDILWKLKGLEN-------------------   54 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCC--------cEEEEEeHHHHHHHhhccCc-------------------
Confidence            467899999999999999999999999998643        89999999999854321100                   


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                          .+.       ......++.++|.    .
T Consensus        55 ----------------------------------------------------~~~-------~~~~~~~v~~~~~----~   71 (116)
T cd04643          55 ----------------------------------------------------LDL-------ERLVDLKVIDVMN----T   71 (116)
T ss_pred             ----------------------------------------------------hhH-------HHHhCCcHHHHhc----C
Confidence                                                                000       0012357889998    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+.+  .+||+|+ +|+++|++|..|+++
T Consensus        72 ~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~  115 (116)
T cd04643          72 DVPVIIDDADIEEILHLLIDQP--FLPVVDD-DGIFIGIITRREILK  115 (116)
T ss_pred             CCceecCCCCHHHHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhc
Confidence            5899999999999999998754  5999987 479999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.3e-11  Score=100.53  Aligned_cols=124  Identities=19%  Similarity=0.253  Sum_probs=89.9

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.++++..+||+|+++        +++|+++..|++...........                
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~--------~~~Giv~~~dl~~~~~~~~~~~~----------------   57 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKG--------KLIGNISASDLKGLLLSPDDLLL----------------   57 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCC--------cEEEEEEHHHhhhhhcCcchhhc----------------
Confidence            577899999999999999999999999998753        89999999999854321100000                


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                   .+                                    ...+. .+.    .......+.|.    .
T Consensus        58 -------------~~------------------------------------~~~~~-~~~----~~~~~~~~~~~----~   79 (126)
T cd04642          58 -------------YR------------------------------------TITFK-ELS----EKFTDSDGVKS----R   79 (126)
T ss_pred             -------------cc------------------------------------chhhh-hhh----hhccccccccc----C
Confidence                         00                                    00000 000    00011223444    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++++++++.++++.|.+++.+++||+|++ ++++|+||..|+++
T Consensus        80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~  125 (126)
T cd04642          80 PLITCTPSSTLKEVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS  125 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence            68899999999999999999999999999984 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.35  E-value=1.4e-11  Score=101.72  Aligned_cols=133  Identities=20%  Similarity=0.363  Sum_probs=95.6

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      +++.++++++++.+|++.|.+++..++||+|+++        +++|+++..|+.............+.            
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~--------~~~Gvi~~~dl~~~~~~~~~~~~~~~------------   61 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDG--------RLVGIVSEGDLLRRAELGTERRRARW------------   61 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCC--------CEEEEeeHHHHHHHhcccCcchhhhH------------
Confidence            5678999999999999999999999999998653        79999999999854322210000000            


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                .         .+.                           ....+.....   ......++.++|.    
T Consensus        62 ----------~---------~~~---------------------------~~~~~~~~~~---~~~~~~~v~~~~~----   88 (135)
T cd04586          62 ----------L---------DLL---------------------------AGAEELAAAF---VRSHGRKVADVMT----   88 (135)
T ss_pred             ----------H---------HHh---------------------------cchHHHHHHH---HHhcCCCHHHHhC----
Confidence                      0         000                           0000000000   0123457899998    


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++.++.+++++.++++.|.+.+.+++||+| + |+++|+||+.|+++
T Consensus        89 ~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~  134 (135)
T cd04586          89 RPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR  134 (135)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence            5689999999999999999999999999999 4 69999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.35  E-value=1.9e-11  Score=98.39  Aligned_cols=116  Identities=19%  Similarity=0.361  Sum_probs=93.3

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchh---hhhccCcccccccCccCCC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF---DIIASQPISDLGLPFMSSD  292 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l---~~l~~~~v~~L~~~~m~~~  292 (351)
                      ++.++++++++.++++.|.+.+..++||+|++ ++++|+++..++.+...........   ......++.+    +|. .
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~-~   75 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE----IMT-K   75 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----Hhh-C
Confidence            47789999999999999998889999999984 8999999999998765321100000   0112345666    465 7


Q ss_pred             CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       293 ~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +++++..++++.++++.|.+++.+.+||+++  |+++|+++..||++
T Consensus        76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~  120 (121)
T cd04584          76 DVITVHPLDTVEEAALLMREHRIGCLPVVED--GRLVGIITETDLLR  120 (121)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence            8889999999999999999999999999986  89999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.7e-11  Score=99.39  Aligned_cols=120  Identities=15%  Similarity=0.222  Sum_probs=90.1

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++++++++.+|++.|.++++.++||+|++.       ++++|+|+..|++.++........                
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~-------~~~~Giv~~~dl~~~~~~~~~~~~----------------   58 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEES-------GEVIGILSQRRLVEFLWENARSFP----------------   58 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCC-------CcEEEEEEHHHHHHHHHHhHHhcc----------------
Confidence            567899999999999999999999999999751       279999999999865432211000                


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                         ..+..   .    .....+.++|.    .
T Consensus        59 ---------------------------------------------------~~~~~---~----~~~~~~~~~~~----~   76 (123)
T cd04627          59 ---------------------------------------------------GLDPL---Y----PIPLRDLTIGT----S   76 (123)
T ss_pred             ---------------------------------------------------chhhh---h----hhhhhhcccCc----C
Confidence                                                               00000   0    00012234565    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV  261 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil  261 (351)
                      ++.++++++++.+|++.|.+++.+++||+|++ ++++|+||.+|+.
T Consensus        77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~  121 (123)
T cd04627          77 DVISINGDQPLIDALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR  121 (123)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence            68899999999999999999999999999984 7999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.35  E-value=3e-11  Score=95.58  Aligned_cols=108  Identities=22%  Similarity=0.331  Sum_probs=91.0

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      ++++++.+++++.+|++.|.+++...+||+|+++        +++|+++..+++..+..                     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~~l~~~~~~---------------------   52 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDG--------RLVGIVTSWDISKAVAR---------------------   52 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCC--------cEEEEEeHHHHHHHHhh---------------------
Confidence            5788999999999999999999999999998653        89999999888732100                     


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                        ...++.++|.    
T Consensus        53 ------------------------------------------------------------------~~~~~~~~~~----   62 (110)
T cd04605          53 ------------------------------------------------------------------DKKSVEDIMT----   62 (110)
T ss_pred             ------------------------------------------------------------------CccCHHHhcC----
Confidence                                                                              0123777777    


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++.++.+++++.++++.|.+++.+.+||++++ |+++|+||+.|+++
T Consensus        63 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~  109 (110)
T cd04605          63 RNVITATPDEPIDVAARKMERHNISALPVVDAE-NRVIGIITSEDISK  109 (110)
T ss_pred             CCCeEECCCCcHHHHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence            558899999999999999999999999999984 89999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.35  E-value=4e-11  Score=120.05  Aligned_cols=177  Identities=15%  Similarity=0.198  Sum_probs=128.1

Q ss_pred             cccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccc
Q 018713           46 VLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVG  125 (351)
Q Consensus        46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~  125 (351)
                      +.+++.   ++++++++++++.+|++.|.++++..+||+|+++        +++|+|+..|+...               
T Consensus        89 ~~dim~---~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g--------~lvGiVt~~DL~~~---------------  142 (486)
T PRK05567         89 SESGVV---TDPVTVTPDTTLAEALALMARYGISGVPVVDENG--------KLVGIITNRDVRFE---------------  142 (486)
T ss_pred             hhhccc---CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCC--------EEEEEEEHHHhhhc---------------
Confidence            455554   7899999999999999999999999999999643        89999999887620               


Q ss_pred             cccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCch
Q 018713          126 TATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTV  205 (351)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V  205 (351)
                                                                                              . ....++
T Consensus       143 ------------------------------------------------------------------------~-~~~~~V  149 (486)
T PRK05567        143 ------------------------------------------------------------------------T-DLSQPV  149 (486)
T ss_pred             ------------------------------------------------------------------------c-cCCCcH
Confidence                                                                                    0 112468


Q ss_pred             HhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccc
Q 018713          206 RSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLG  285 (351)
Q Consensus       206 ~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~  285 (351)
                      .++|++   .+++++.+++++.++++.|.+++++.+||+|++ |+++|+||.+|+++.+.....       ....-..| 
T Consensus       150 ~dim~~---~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a-------~~d~~g~l-  217 (486)
T PRK05567        150 SEVMTK---ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNA-------CKDEQGRL-  217 (486)
T ss_pred             HHHcCC---CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCc-------ccccCCCE-
Confidence            888871   358899999999999999999999999999984 899999999999987632110       00001111 


Q ss_pred             cCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 018713          286 LPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  340 (351)
Q Consensus       286 ~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~  340 (351)
                         +- ...+.+++  .-.+..+.|.+.+++ ++++|.+.|+..++++.-+.++.
T Consensus       218 ---~V-~aai~~~~--~~~e~a~~L~~agvd-vivvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        218 ---RV-GAAVGVGA--DNEERAEALVEAGVD-VLVVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             ---EE-EeecccCc--chHHHHHHHHHhCCC-EEEEECCCCcchhHHHHHHHHHh
Confidence               00 11222223  227777888899998 55777545777777765555443

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.4e-11  Score=99.46  Aligned_cols=116  Identities=18%  Similarity=0.315  Sum_probs=93.7

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch--hhh--hccCcccccccCccCC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--FDI--IASQPISDLGLPFMSS  291 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~--l~~--l~~~~v~~L~~~~m~~  291 (351)
                      ++.++++++++.++++.|.+++++.+||+|+  |+++|+++..++.+.+........  ..+  ....++.+    +|. 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-   74 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ----IMT-   74 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH----hhc-
Confidence            4778999999999999999999999999986  589999999999886642110000  000  01235666    465 


Q ss_pred             CCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       292 ~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      .+++++.+++++.++++.|.+++...+||+++ +|+++|+++..|+++
T Consensus        75 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~  121 (122)
T cd04637          75 RDPITVSPDTPVDEASKLLLENSISCLPVVDE-NGQLIGIITWKDLLK  121 (122)
T ss_pred             CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhh
Confidence            78899999999999999999999999999998 799999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=2.7e-11  Score=96.72  Aligned_cols=110  Identities=16%  Similarity=0.345  Sum_probs=88.2

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcC-ceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECN-ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~-i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      ++.++++++++.+|++.|.+++ ...+||.+++         +++|+++..|++..+...                    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~dl~~~~~~~--------------------   52 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKG---------RLLGIFTERDIVRLTAIG--------------------   52 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCC---------cEEEEEeHHHHHHHHhcC--------------------
Confidence            4668999999999999998888 6677777742         799999999988432110                    


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                     ......++.++|.    
T Consensus        53 ---------------------------------------------------------------~~~~~~~i~~~~~----   65 (115)
T cd04620          53 ---------------------------------------------------------------KDLSDLPIGEVMT----   65 (115)
T ss_pred             ---------------------------------------------------------------CCccccCHHHhcC----
Confidence                                                                           1122356788887    


Q ss_pred             CCcEEecCC--CCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          215 APFLPVATD--DSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       215 ~~~~~v~~~--~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++.++.++  +++.++++.|.+++.+.+||+|++ |+++|+||++|+++
T Consensus        66 ~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~  114 (115)
T cd04620          66 QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ  114 (115)
T ss_pred             CCcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence            558888887  789999999999999999999984 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.35  E-value=3e-11  Score=96.25  Aligned_cols=109  Identities=17%  Similarity=0.234  Sum_probs=91.0

Q ss_pred             cEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccccc
Q 018713           57 VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGT  136 (351)
Q Consensus        57 ~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (351)
                      .+++++++++.+|++.|.+++...+||+|+++        +++|+++..|++..+..                       
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~--------~~~G~v~~~dl~~~~~~-----------------------   52 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDENG--------RLLGTVTDGDIRRALLK-----------------------   52 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCCC--------CEEEEEEcHHHHHHHhc-----------------------
Confidence            46799999999999999999999999998753        79999999888743211                       


Q ss_pred             ccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCC
Q 018713          137 VGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAP  216 (351)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~  216 (351)
                                                                                   ......++.++|.    .+
T Consensus        53 -------------------------------------------------------------~~~~~~~v~~~~~----~~   67 (113)
T cd04607          53 -------------------------------------------------------------GLSLDDPVSEVMN----RN   67 (113)
T ss_pred             -------------------------------------------------------------CCCcCCCHHHhhc----CC
Confidence                                                                         1112356888887    55


Q ss_pred             cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      +.++.+++++.++++.|.+++.+.+||++++ |+++|+||.+|++.
T Consensus        68 ~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  112 (113)
T cd04607          68 PITAKVGSSREEILALMRERSIRHLPILDEE-GRVVGLATLDDLLS  112 (113)
T ss_pred             CEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence            8899999999999999999999999999974 79999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.34  E-value=1.1e-11  Score=97.92  Aligned_cols=106  Identities=20%  Similarity=0.434  Sum_probs=88.8

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++.+++++.++++.|.+++...+||+|++ |+++|+++..+++....           ...++.+    +|. ..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-----------~~~~v~~----~~~-~~~~   65 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-----------LDKPVSE----VMT-PENL   65 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-----------CCCCHHH----hcc-cCce
Confidence            47789999999999999998899999999984 89999999999854321           1345667    465 5555


Q ss_pred             EEcC-CCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQS-NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~-~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      .+.. ++++.++++.|.+.+.+.+||+++ +|+++|+||.+|+++
T Consensus        66 ~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~  109 (110)
T cd04601          66 LTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK  109 (110)
T ss_pred             EEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence            6666 999999999999999999999997 899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.34  E-value=3.4e-11  Score=95.25  Aligned_cols=108  Identities=17%  Similarity=0.334  Sum_probs=91.0

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.++++..+||+++ +        +++|+++..|++.+..                       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~--------~~~G~v~~~~l~~~~~-----------------------   49 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-G--------KLVGIVTLSDIAHAIA-----------------------   49 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-C--------EEEEEEEHHHHHHHHh-----------------------
Confidence            5778999999999999999999999999987 3        8999999999884310                       


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    ......++.++|.    .
T Consensus        50 --------------------------------------------------------------~~~~~~~v~~~~~----~   63 (110)
T cd04588          50 --------------------------------------------------------------RGLELAKVKDVMT----K   63 (110)
T ss_pred             --------------------------------------------------------------ccccccCHHHHhc----C
Confidence                                                                          0011256778887    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++++++++.++++.|.+.+.+.+||++++ |+++|+|+..|+++
T Consensus        64 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  109 (110)
T cd04588          64 DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR  109 (110)
T ss_pred             CceEECCCCCHHHHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence            68999999999999999999999999999884 79999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=2.4e-11  Score=99.88  Aligned_cols=131  Identities=22%  Similarity=0.325  Sum_probs=95.5

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++.+++++.+|++.|.+++..++||+|+++        +++|+++..+|+.++.........        +      
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~--------~~~G~i~~~~l~~~~~~~~~~~~~--------~------   59 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEG--------RVVGIVSEGDLIRKIYKGKGLFYV--------T------   59 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCC--------CEEEEEeHHHHHHHHhccCCcccc--------c------
Confidence            567899999999999999999999999998753        899999999998654322100000        0      


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                          .+                                    ......   ..+..+      .....++.++|.    .
T Consensus        60 ----~~------------------------------------~~~~~~---~~~~~~------~~~~~~v~~~~~----~   86 (132)
T cd04636          60 ----LL------------------------------------YSVIFL---DESKIK------KLLGKKVEEIMT----K   86 (132)
T ss_pred             ----cc------------------------------------cccccc---chHHHH------HHcCCCHHHhcc----C
Confidence                00                                    000000   011111      123347899998    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG  263 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~  263 (351)
                      ++..+.+++++.++++.|.+.+.+.+||+|+  |+++|++|+.|++++
T Consensus        87 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~~  132 (132)
T cd04636          87 KVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIRS  132 (132)
T ss_pred             CceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhcC
Confidence            5889999999999999999999999999986  589999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.34  E-value=1.9e-11  Score=96.21  Aligned_cols=105  Identities=16%  Similarity=0.353  Sum_probs=90.1

Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v  294 (351)
                      +++.+++.+.++.++++.|.+.+...+||+|+  ++++|+++..|++..-            ...++.+    +|. .++
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~------------~~~~~~~----~~~-~~~   62 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD------------PDETVEE----IMS-KDL   62 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC------------ccccHHH----hCC-CCC
Confidence            45788999999999999998888889999985  5899999999997421            1235667    465 778


Q ss_pred             eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      .++.+++++.++++.|.+++.+.+||+++ +|+++|+|+..||++
T Consensus        63 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~  106 (107)
T cd04610          63 VVAVPEMDIMDAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIR  106 (107)
T ss_pred             eEECCCCCHHHHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhc
Confidence            89999999999999999999999999998 899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11573 hypothetical protein; Provisional

Probab=99.34  E-value=3.8e-11  Score=117.70  Aligned_cols=167  Identities=10%  Similarity=0.126  Sum_probs=126.5

Q ss_pred             HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713           40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA  119 (351)
Q Consensus        40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~  119 (351)
                      .|++.++.++|. |+.++++++.++++.++++.+.+++.+++||++++       .++++|++...|++......     
T Consensus       183 ~l~~~~v~eiMt-Pr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~-------~D~IiGiv~~kDll~~~~~~-----  249 (413)
T PRK11573        183 DLEKVTVDDIMV-PRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS-------LDDAISMLRVREAYRLMTEK-----  249 (413)
T ss_pred             ccCCCChhhcCC-ccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC-------CCceEEEEEHHHHHHHhhcc-----
Confidence            467899999996 88999999999999999999999999999999865       34899999999998421100     


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                                                                                                    ..
T Consensus       250 ------------------------------------------------------------------------------~~  251 (413)
T PRK11573        250 ------------------------------------------------------------------------------KE  251 (413)
T ss_pred             ------------------------------------------------------------------------------Cc
Confidence                                                                                          00


Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      .....+.+++     +++..|++++++.++++.|.+++.+-+.|+|+. |...|+||.+|+++.+.... .+..+.....
T Consensus       252 ~~~~~l~~~~-----r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei-~de~d~~~~~  324 (413)
T PRK11573        252 FTKENMLRAA-----DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDF-TTSMSPTLAE  324 (413)
T ss_pred             CCHHHHHhhc-----cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCC-CcccCccccc
Confidence            1111233443     357899999999999999999999999999995 88999999999999987543 1222110111


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHH
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRM  310 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m  310 (351)
                      .+..+      ....+.|+..+++.++-+.+
T Consensus       325 ~i~~~------~~~~~~v~G~~~l~d~~~~l  349 (413)
T PRK11573        325 EVTPQ------NDGSVIIDGTANVREINKAF  349 (413)
T ss_pred             ceEEe------cCCEEEEEeeeEHHHHHHHh
Confidence            23331      24567889999999998876

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.7e-11  Score=95.43  Aligned_cols=94  Identities=18%  Similarity=0.343  Sum_probs=82.4

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++.+++++.+|++.|.++++..+||+|+++        +++|+++..|+...                         
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~--------~~~Giv~~~dl~~~-------------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDG--------KLSGIITERDLIAK-------------------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCC--------CEEEEEEHHHHhcC-------------------------
Confidence            577899999999999999999999999998653        89999999887710                         


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                                     .
T Consensus        49 -------------------------------------------------------------------------------~   49 (96)
T cd04614          49 -------------------------------------------------------------------------------S   49 (96)
T ss_pred             -------------------------------------------------------------------------------C
Confidence                                                                                           0


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .+.++.+++++.++++.|.+++.+++||++++ |+++|+||++|+++
T Consensus        50 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~   95 (96)
T cd04614          50 EVVTATKRTTVSECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLK   95 (96)
T ss_pred             CcEEecCCCCHHHHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            15678999999999999999999999999984 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.34  E-value=2e-11  Score=96.03  Aligned_cols=100  Identities=16%  Similarity=0.240  Sum_probs=86.5

Q ss_pred             EEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceEE
Q 018713          218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITI  297 (351)
Q Consensus       218 ~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~V  297 (351)
                      +++++++++.++++.|.+.+.+.+||+|+  ++++|+++..|+.+..             ..++.+    +|. ....++
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~-------------~~~~~~----~~~-~~~~~v   63 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT-------------YGDVVD----YIV-RGIPYV   63 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc-------------ccchhh----hhh-cCCcEE
Confidence            56899999999999999999999999986  5899999999997532             123555    465 677899


Q ss_pred             cCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          298 QSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       298 ~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++++++.++++.|.+++...+||+++  |+++|+||..|+++
T Consensus        64 ~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~  103 (104)
T cd04594          64 RLTSTAEEAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD  103 (104)
T ss_pred             cCCCCHHHHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence            99999999999999999999999985  89999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=3.4e-11  Score=98.24  Aligned_cols=125  Identities=20%  Similarity=0.311  Sum_probs=94.3

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.+.+...+||+|+++        +++|+++..|+..++.........               
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~--------~~~G~it~~dl~~~~~~~~~~~~~---------------   58 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNG--------KLTGIVTRHDIVDFVVRDRDKART---------------   58 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCC--------cEEEEEEHHHHHHHHhhhhhhcch---------------
Confidence            567899999999999999999999999999753        899999999998543222100000               


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                          ...   -.........++.++|.    .
T Consensus        59 ----------------------------------------------------~~~---~~~~~~~~~~~~~~~~~----~   79 (128)
T cd04632          59 ----------------------------------------------------GDR---SGEKERMLDLPVYDAMS----S   79 (128)
T ss_pred             ----------------------------------------------------hhh---hhhhhhhccCcHHHHhc----C
Confidence                                                                000   00001123457889998    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~-~~g~liGiIt~~dil~  262 (351)
                      +++++++++++.++++.|.+.+.+.+||+++ ++++++|+||++|+++
T Consensus        80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          80 PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            6999999999999999999999999999853 2479999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.33  E-value=3e-11  Score=96.53  Aligned_cols=109  Identities=27%  Similarity=0.497  Sum_probs=94.6

Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v  294 (351)
                      ..+.++.++.++.++...|.++++..+||++.+  +++|++|.+|+++.+.....       ...++.+    +|. .++
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~--~l~Giit~~di~~~~~~~~~-------~~~~v~~----v~~-~~~   72 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDG--KLVGIITERDILRALAAGGK-------RLLPVKE----VMT-KPV   72 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC--EEEEEEEHHHHHHHHhccCC-------ccccHHH----hcc-CCc
Confidence            458899999999999999999999999999863  79999999999999865532       1114666    575 789


Q ss_pred             eEEcCCCcHHHHHHHHHh-cCCCeeEEEeCCCC-eEEEEEeHHHHH
Q 018713          295 ITIQSNELILEAFKRMKD-NNIGGIPVVEGQQK-KIVGNVSIRDIR  338 (351)
Q Consensus       295 ~~V~~~~~l~~al~~m~~-~~~~~lpVvd~~~g-~liGiIt~~DIl  338 (351)
                      +++.+++++.++++.|.+ ++.+.+||+++ ++ +++|++|..|++
T Consensus        73 ~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di~  117 (117)
T COG0517          73 VTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDIL  117 (117)
T ss_pred             EEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHcC
Confidence            999999999999999999 79999999998 75 999999999973

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.33  E-value=3.8e-11  Score=95.23  Aligned_cols=110  Identities=25%  Similarity=0.311  Sum_probs=91.4

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.+++...+||+|+ +        +++|+++..|++..+...                     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~--------~~~G~v~~~~l~~~~~~~---------------------   51 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-D--------PRLGIVTRTDLLDAVLLD---------------------   51 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-C--------eEEEEEEHHHHHHHHHcC---------------------
Confidence            4678999999999999999999999999987 3        799999998887422100                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    ......++.++|.    .
T Consensus        52 --------------------------------------------------------------~~~~~~~i~~~~~----~   65 (111)
T cd04589          52 --------------------------------------------------------------GLPSSTPVGEIAT----F   65 (111)
T ss_pred             --------------------------------------------------------------CCCCCCCHHHHhC----C
Confidence                                                                          1123467888998    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG  263 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~  263 (351)
                      ++..+++++++.++++.|.+++.+.+||+++  ++++|+||..|++++
T Consensus        66 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~~  111 (111)
T cd04589          66 PLITVDPDDFLFNALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLSF  111 (111)
T ss_pred             CcEEECCCCcHHHHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhcC
Confidence            5889999999999999999999999999985  589999999999753

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.33  E-value=1.4e-11  Score=122.20  Aligned_cols=120  Identities=14%  Similarity=0.187  Sum_probs=103.4

Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v  281 (351)
                      ..++.++|.    ++++++.+++++.++++.|.+++++.+||+|+  ++++|+||.+|+...     .       ...++
T Consensus        87 ~VKv~eim~----~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~-----~-------~~~~V  148 (475)
T TIGR01303        87 FVKSRDLVL----DTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGV-----D-------RFTQV  148 (475)
T ss_pred             hcchhhccc----cCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcC-----C-------CCCCH
Confidence            466778888    55899999999999999999999999999885  489999999998421     0       12468


Q ss_pred             cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE  345 (351)
Q Consensus       282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~  345 (351)
                      .+    +|+ .+++++++++++.+++++|.+++++.+||+|+ +|+++|+||.+||++....+.
T Consensus       149 ~d----IMt-~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~~~~  206 (475)
T TIGR01303       149 RD----IMS-TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATIYTP  206 (475)
T ss_pred             HH----Hcc-CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhCCc
Confidence            88    586 88999999999999999999999999999997 899999999999999776653

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.33  E-value=1.1e-11  Score=123.57  Aligned_cols=122  Identities=18%  Similarity=0.237  Sum_probs=99.2

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v  281 (351)
                      .|+++|.... ..+.++++++++.++++.|.++++..+||+|++  +++++|+||..|+....  .        ....++
T Consensus        95 kVk~~~~g~i-~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--~--------~~~~~V  163 (502)
T PRK07107         95 RVKNYKAGFV-VSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--M--------SLDTKV  163 (502)
T ss_pred             HHHHHhcCCc-CCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--c--------CCCCCH
Confidence            4555554110 124689999999999999999999999999862  37999999999985321  0        135678


Q ss_pred             cccccCccCC-CCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713          282 SDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (351)
Q Consensus       282 ~~L~~~~m~~-~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l  341 (351)
                      ++    +|+. ++++++++++++.+|+++|.++++..+||+|+ +|+++|+||.+||++..
T Consensus       164 ~d----IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        164 KD----FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             HH----HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhcc
Confidence            88    5862 27889999999999999999999999999998 89999999999999864

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=3.1e-11  Score=100.08  Aligned_cols=133  Identities=11%  Similarity=0.227  Sum_probs=94.6

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++++++++.+|++.|.+++...+||+|+++        +++|+++..|++.+.........                
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~--------~~~Giv~~~dl~~~~~~~~~~~~----------------   57 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNG--------KPVGVITYRDLAFAEFEDNERGL----------------   57 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCC--------CEEEEEeHHHHHHHhhccccccc----------------
Confidence            456799999999999999999999999998753        89999999999865432110000                


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                    +..  +...+            .             ...+.....   ......++.++|.    .
T Consensus        58 --------------~~~--~~~~~------------~-------------~~~~~~~~~---~~~~~~~v~~~~~----~   89 (135)
T cd04621          58 --------------PKK--SIKMK------------R-------------KAGQKRYRY---VKEVPLVAEDIMT----E   89 (135)
T ss_pred             --------------chh--hhhhh------------h-------------hcccccccc---cccccccHHHhcC----C
Confidence                          000  00000            0             000000000   1123457999998    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++..+.+++++.++++.|.+++.+.+||+++  |+++|+||++|+++
T Consensus        90 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~  134 (135)
T cd04621          90 EIITVSPNDDVVDAAKLMLEANISGLPVVDN--DNIVGVITKTDICR  134 (135)
T ss_pred             CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence            6889999999999999999999999999986  58999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.32  E-value=4.5e-11  Score=94.55  Aligned_cols=109  Identities=23%  Similarity=0.362  Sum_probs=91.4

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++++++++.+|++.|.+++...+||++++         +++|+++..|+..+....                     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~---------~~~G~v~~~~l~~~~~~~---------------------   51 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDDG---------RPLGIVTERDILRLLASG---------------------   51 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeCC---------EEEEEEeHHHHHHHHhcC---------------------
Confidence            56789999999999999999999999999862         899999999988432110                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                     .....++.++|.    .
T Consensus        52 ---------------------------------------------------------------~~~~~~v~~~~~----~   64 (111)
T cd04611          52 ---------------------------------------------------------------PDLQTPVGEVMS----S   64 (111)
T ss_pred             ---------------------------------------------------------------CCCCcCHHHhcC----C
Confidence                                                                           013456888887    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++++++++.++++.|.+.+.+.+||+|++ |+++|+|+.+|+++
T Consensus        65 ~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~  110 (111)
T cd04611          65 PLLTVPADTSLYDARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ  110 (111)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence            58899999999999999999999999999984 79999999999864

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.32  E-value=3.5e-11  Score=95.60  Aligned_cols=111  Identities=18%  Similarity=0.299  Sum_probs=91.4

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++.+++++.++++.|.+++...+||+++ +        +++|+++..|++..+...                     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~--------~~~G~v~~~dl~~~~~~~---------------------   51 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-N--------KLVGIFTSKDIALRVVAQ---------------------   51 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-C--------EEEEEEEhHHHHHHHHhc---------------------
Confidence            5678999999999999999999999999986 3        899999999987432211                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                   .......++.++|.    .
T Consensus        52 -------------------------------------------------------------~~~~~~~~v~~i~~----~   66 (113)
T cd04587          52 -------------------------------------------------------------GLDPESTLVERVMT----P   66 (113)
T ss_pred             -------------------------------------------------------------CCCcCcCCHHHhcC----C
Confidence                                                                         00011257888987    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++.+++||+++ +++++|+||..|++.
T Consensus        67 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~  112 (113)
T cd04587          67 NPVCATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCeEEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence            5889999999999999999999999999997 379999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.32  E-value=3.4e-11  Score=118.85  Aligned_cols=137  Identities=12%  Similarity=0.197  Sum_probs=114.0

Q ss_pred             HHHHhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCC
Q 018713          190 FYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG  269 (351)
Q Consensus       190 ~~~~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~  269 (351)
                      ....+.+--.+.+.+|+++|+|.  .++..++.+.++.++.+.+.+++++|+||++++.+.++|+++.+|++........
T Consensus       193 E~~mi~~v~~l~~~~v~eiMtPR--~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~  270 (429)
T COG1253         193 EREMINNVLDLDDRTVREIMTPR--TDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS  270 (429)
T ss_pred             HHHHHHHHhccCCcEeeeEeeec--ccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc
Confidence            33334333458889999999976  8999999999999999999999999999999545789999999999998865431


Q ss_pred             CchhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          270 RDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       270 ~~~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                       .       .....    .+  .+++.|++++++.++++.|++++.+-..|+|+ .|...|+||.+||++.+.+
T Consensus       271 -~-------~~~~~----~~--~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-yG~~~GlVTleDIiEeIvG  329 (429)
T COG1253         271 -D-------LDLRV----LV--RPPLFVPETLSLSDLLEEFREERTHMAIVVDE-YGGVEGLVTLEDIIEEIVG  329 (429)
T ss_pred             -c-------cchhh----cc--cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-CCCeEEEeEHHHHHHHHhC
Confidence             0       11111    12  48889999999999999999999998889999 9999999999999999876

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=5.6e-11  Score=94.35  Aligned_cols=110  Identities=26%  Similarity=0.360  Sum_probs=91.9

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++++++++.+|++.|.++++..+||+|+++        +++|+++..|++.++...                     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~--------~~~G~v~~~~l~~~~~~~---------------------   52 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDE--------RPIGIVTERDIVRAVAAG---------------------   52 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCC--------CEEEEeeHHHHHHHHhcc---------------------
Confidence            467899999999999999999999999998753        899999999987443111                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                     .....++.++|.    .
T Consensus        53 ---------------------------------------------------------------~~~~~~v~~~~~----~   65 (112)
T cd04624          53 ---------------------------------------------------------------IDLDTPVSEIMT----R   65 (112)
T ss_pred             ---------------------------------------------------------------CCCccCHHHhcc----C
Confidence                                                                           112346788887    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++...+||++++ |++.|++|..|+++
T Consensus        66 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~  111 (112)
T cd04624          66 DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR  111 (112)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence            58899999999999999999899999999984 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.32  E-value=4.6e-11  Score=94.70  Aligned_cols=109  Identities=21%  Similarity=0.349  Sum_probs=91.2

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++++++++.+|++.|.++++..+||+|+ +        +++|+++..++...+...                     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~--------~~~G~v~~~~l~~~~~~~---------------------   51 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-G--------RLVGIVTDRDLRNRVVAE---------------------   51 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-C--------EEEEEEEhHHHHHHHhcc---------------------
Confidence            5778999999999999999999999999986 2        899999999988432110                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    ......++.++|.    .
T Consensus        52 --------------------------------------------------------------~~~~~~~i~~~~~----~   65 (111)
T cd04800          52 --------------------------------------------------------------GLDPDTPVSEVMT----A   65 (111)
T ss_pred             --------------------------------------------------------------CCCccCCHHHHhC----C
Confidence                                                                          1122356888887    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++++++++.++++.|.+++.+.+||+++  |+++|++|.+|+++
T Consensus        66 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          66 PPITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            5899999999999999999999999999986  58999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.32  E-value=4.8e-11  Score=94.51  Aligned_cols=108  Identities=18%  Similarity=0.288  Sum_probs=91.5

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      +++++++.+.++.+|++.|.+++...+||+|+ +        +++|+++..|+.....                      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~--------~~~G~v~~~dl~~~~~----------------------   50 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-G--------RVVGIISRRDVEKALR----------------------   50 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-C--------EEEEEEEHHHHHHHHh----------------------
Confidence            46789999999999999999999999999987 3        7999999998773210                      


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                     ......++.++|.    
T Consensus        51 ---------------------------------------------------------------~~~~~~~~~~~~~----   63 (110)
T cd04595          51 ---------------------------------------------------------------HGLGHAPVKDYMS----   63 (110)
T ss_pred             ---------------------------------------------------------------cccccCcHHHHhc----
Confidence                                                                           0013457888888    


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++.++.+++++.++++.|.+++.+.+||+++  |+++|+||+.|+++
T Consensus        64 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvvt~~di~~  109 (110)
T cd04595          64 TDVVTVPPDTPLSEVQELMVEHDIGRVPVVED--GRLVGIVTRTDLLR  109 (110)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeeEEEeC--CEEEEEEEhHHhhc
Confidence            55889999999999999999999999999983  69999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.31  E-value=3.9e-11  Score=95.37  Aligned_cols=111  Identities=14%  Similarity=0.167  Sum_probs=91.6

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++.+++++.++++.|.+.+.+.+||+|+++        +++|+++..++...+...                     
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~--------~~~G~v~~~~i~~~~~~~---------------------   53 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDG--------RLVGIFTDGDLRRALEKG---------------------   53 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCC--------CEEEEechHHHHHHHhcc---------------------
Confidence            456789999999999999988999999998753        899999988877432111                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    ......++.++|.    .
T Consensus        54 --------------------------------------------------------------~~~~~~~v~~~~~----~   67 (114)
T cd04604          54 --------------------------------------------------------------LDILTLPVADVMT----R   67 (114)
T ss_pred             --------------------------------------------------------------CccccCCHHHhhc----c
Confidence                                                                          1122347889998    4


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++++++++.++++.|.+++.+.+||++++ ++++|+|+..|+++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~  113 (114)
T cd04604          68 NPKTIDPDALAAEALELMEENKITALPVVDDN-GRPVGVLHIHDLLR  113 (114)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence            58899999999999999999999999999974 79999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=3.3e-11  Score=97.21  Aligned_cols=120  Identities=17%  Similarity=0.285  Sum_probs=93.3

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.++++..+||+|+++        +++|+++..|++..........                 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~~l~~~~~~~~~~~-----------------   56 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAG--------ELIGIITRRDIIRAGSVRTSVE-----------------   56 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCC--------cEEEEEEcHHHHhhcccccccc-----------------
Confidence            578899999999999999999999999998643        8999999999884210000000                 


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                         .....      ......++.++|.    .
T Consensus        57 ---------------------------------------------------~~~~~------~~~~~~~~~~~~~----~   75 (122)
T cd04635          57 ---------------------------------------------------DQQRT------QTKASPTVEKIMS----T   75 (122)
T ss_pred             ---------------------------------------------------chhhh------hhhccCcHHHHhc----C
Confidence                                                               00000      0023456888887    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++.+.+||++++ |+++|++|..|+++
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~  121 (122)
T cd04635          76 PVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK  121 (122)
T ss_pred             CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence            58999999999999999999999999999984 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.31  E-value=5.5e-11  Score=93.70  Aligned_cols=106  Identities=25%  Similarity=0.354  Sum_probs=89.9

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++++++++.+|++.|.++++..+||+|+++        +++|+++..|++...                        
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~--------~~~G~v~~~dl~~~~------------------------   50 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDN--------KLLGIVSLESLEQAY------------------------   50 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCC--------cEEEEEEHHHHHHHh------------------------
Confidence            567899999999999999999999999998753        799999998887321                        


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                      ....++.++|.    .
T Consensus        51 ----------------------------------------------------------------~~~~~v~~~~~----~   62 (109)
T cd04583          51 ----------------------------------------------------------------KEAKSLEDIML----E   62 (109)
T ss_pred             ----------------------------------------------------------------hcCCcHhHhhc----C
Confidence                                                                            01135677887    4


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .+.++++++++.++++.|.+++.+++||++++ |+++|++|.+|+++
T Consensus        63 ~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~  108 (109)
T cd04583          63 DVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD  108 (109)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence            58899999999999999999999999999974 79999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.31  E-value=4.7e-11  Score=93.81  Aligned_cols=104  Identities=16%  Similarity=0.206  Sum_probs=87.8

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.+++...+||+|+++        +++|+++..|++..                         
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g--------~~~Giv~~~dl~~~-------------------------   48 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADG--------QPLGFVTRREAARA-------------------------   48 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCC--------CEEEEEeHHHHHHh-------------------------
Confidence            467899999999999999999999999998643        89999999888721                         


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                       ...++.++|.    .
T Consensus        49 -----------------------------------------------------------------~~~~~~~~~~----~   59 (106)
T cd04582          49 -----------------------------------------------------------------SGGCCGDHAE----P   59 (106)
T ss_pred             -----------------------------------------------------------------cccchhhhcc----c
Confidence                                                                             0023567776    4


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++..+.+++++.++++.|.+++...+||+|++ ++++|+|+.+++++
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~  105 (106)
T cd04582          60 FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD  105 (106)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            47789999999999999999999999999984 79999999999865

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=3.8e-11  Score=97.90  Aligned_cols=119  Identities=16%  Similarity=0.194  Sum_probs=88.6

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++.+++++.+|++.|.+++...+||+|+++        +++|+++..|+.......                     
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~--------~~~Giv~~~dl~~~~~~~---------------------   52 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDD--------NFIGVITAVDLLGEEPIK---------------------   52 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCC--------cEEEEEEHHHHhhChhhH---------------------
Confidence            467899999999999999999999999998653        799999999988311000                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhc-CCCCcCchHhhhhccCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE-EPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~-~~~~~~~V~dim~~~~~  214 (351)
                                                                               .+... ......++.++|.+.  
T Consensus        53 ---------------------------------------------------------~~~~~~~~~~~~~v~~im~~~--   73 (126)
T cd04640          53 ---------------------------------------------------------RIQEGGISRSELTVADVMTPK--   73 (126)
T ss_pred             ---------------------------------------------------------HHHHcCCCchheEHHHhcCch--
Confidence                                                                     00000 112345688999733  


Q ss_pred             CCcEEe----cCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          215 APFLPV----ATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       215 ~~~~~v----~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .....+    .+++++.++++.|.+++.+.+||+|++.|+++|+||.+|+++
T Consensus        74 ~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          74 EDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            111223    368899999999999999999999873268999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=6.5e-11  Score=94.04  Aligned_cols=111  Identities=20%  Similarity=0.365  Sum_probs=91.1

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++.+++++.+|++.|.+++...+||+|+ +        +++|+++..|++......                     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~--------~~~G~i~~~~l~~~~~~~---------------------   51 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-D--------RLVGIVTDRDIVVRAVAE---------------------   51 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-C--------EEEEEEEhHHHHHHHhhc---------------------
Confidence            5778999999999999999999999999987 2        899999999986321110                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                   .......++.++|.    .
T Consensus        52 -------------------------------------------------------------~~~~~~~~~~~~~~----~   66 (113)
T cd04622          52 -------------------------------------------------------------GRDPDTTTVGDVMT----R   66 (113)
T ss_pred             -------------------------------------------------------------cCCcccCCHHHhcc----C
Confidence                                                                         01112235888888    4


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .+.++.+++++.++++.|...+.+++||++++ |+++|+++..|+++
T Consensus        67 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  112 (113)
T cd04622          67 GVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR  112 (113)
T ss_pred             CccEECCCCCHHHHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            58899999999999999999999999999874 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.30  E-value=3.6e-11  Score=95.11  Aligned_cols=100  Identities=16%  Similarity=0.333  Sum_probs=87.0

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE  293 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~  293 (351)
                      ....+.+++++.++.+.+.+.+...+||+|++  +|+++|+|+.+|+.+....                     +|. .+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------~m~-~~   60 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------YID-PS   60 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------hcc-CC
Confidence            35678999999999999999888899999872  2789999999999776632                     154 67


Q ss_pred             ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +.++++++++.++++.|.+++.+++||++  +|+++|+||..|+++
T Consensus        61 ~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~  104 (105)
T cd04591          61 PFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK  104 (105)
T ss_pred             CceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence            88999999999999999999999999996  499999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.30  E-value=4.3e-11  Score=94.80  Aligned_cols=102  Identities=25%  Similarity=0.359  Sum_probs=85.3

Q ss_pred             EcCCCCHHHHHHHHHHcC-----ceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           60 IMADTTIPDAVKILSECN-----ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        60 v~~~~sl~~al~~m~~~~-----i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      +++++++.++++.|.+++     +..+||+|+++        +++|+++..+++..                        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~--------~~~G~v~~~~l~~~------------------------   49 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEG--------RLLGVVSLRDLLLA------------------------   49 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCC--------CEEEEEEHHHHhcC------------------------
Confidence            578899999999999877     57899998653        89999998777610                        


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                       ....++.++|.    
T Consensus        50 -----------------------------------------------------------------~~~~~v~~~~~----   60 (109)
T cd04606          50 -----------------------------------------------------------------DPDTPVSDIMD----   60 (109)
T ss_pred             -----------------------------------------------------------------CCcchHHHHhC----
Confidence                                                                             01245778887    


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG  263 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~  263 (351)
                      .++..+.+++++.++++.|..++.+.+||+|++ ++++|+||..|+++.
T Consensus        61 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~  108 (109)
T cd04606          61 TDVISVSADDDQEEVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV  108 (109)
T ss_pred             CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence            458899999999999999999999999999874 799999999999865

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=8.3e-11  Score=93.34  Aligned_cols=111  Identities=20%  Similarity=0.353  Sum_probs=91.8

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      +++.++++++++.+|++.|.+++...+||+|++         +++|+++..|++.++....                   
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~dl~~~~~~~~-------------------   52 (112)
T cd04802           1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDNE---------KPVGIITERDLVKKVVSRN-------------------   52 (112)
T ss_pred             CCcEEECCCCCHHHHHHHHHHCCCCEEEEEECC---------EEEEEEEHHHHHHHHhhcc-------------------
Confidence            357789999999999999999999999999863         7999999999885432110                   


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                     ......++.++|.    
T Consensus        53 ---------------------------------------------------------------~~~~~~~~~~~~~----   65 (112)
T cd04802          53 ---------------------------------------------------------------LKPREVPVGEVMS----   65 (112)
T ss_pred             ---------------------------------------------------------------CCcccCCHHHhcC----
Confidence                                                                           0112356888887    


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++.++.+++++.++++.|.+++.+.+||+|++  +++|+|+.+|+++
T Consensus        66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~  111 (112)
T cd04802          66 TPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM  111 (112)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence            558899999999999999999999999999873  8999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.29  E-value=6.4e-11  Score=92.80  Aligned_cols=102  Identities=15%  Similarity=0.279  Sum_probs=87.4

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.++++.|.++++..+||+|++         +++|+++..+++..                         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~---------~~~Giv~~~~l~~~-------------------------   47 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDG---------KLVGIITSRDVRRA-------------------------   47 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECC---------EEEEEEehHHhhcc-------------------------
Confidence            56789999999999999999999999999742         89999999887720                         


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                      ....++.++|.    .
T Consensus        48 ----------------------------------------------------------------~~~~~~~~~~~----~   59 (105)
T cd04599          48 ----------------------------------------------------------------HPNRLVADAMT----R   59 (105)
T ss_pred             ----------------------------------------------------------------cccCCHHHHcc----C
Confidence                                                                            11235778887    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV  261 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil  261 (351)
                      ++.++++++++.++++.|.+++...+||+|+  |+++|+||..|++
T Consensus        60 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~  103 (105)
T cd04599          60 EVVTISPEASLLEAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA  103 (105)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence            5889999999999999999999999999986  5999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.29  E-value=9.5e-11  Score=92.67  Aligned_cols=109  Identities=15%  Similarity=0.257  Sum_probs=90.5

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.+.++..+||+|+ +        +++|+++..|+......                      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~--------~~~G~v~~~dl~~~~~~----------------------   50 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-G--------RLVGIVTLADIRRVPAE----------------------   50 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-C--------eEEEEEEHHHHHHHHhc----------------------
Confidence            5678999999999999999999999999987 3        89999999998732100                      


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    ......++.++|.    .
T Consensus        51 --------------------------------------------------------------~~~~~~~~~~~~~----~   64 (111)
T cd04612          51 --------------------------------------------------------------GREATVLVGDVMT----R   64 (111)
T ss_pred             --------------------------------------------------------------CcccccCHHHhcc----C
Confidence                                                                          0011135677787    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..|+++
T Consensus        65 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~  110 (111)
T cd04612          65 DPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR  110 (111)
T ss_pred             CCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence            6999999999999999999999999999988 379999999999865

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.29  E-value=9.8e-11  Score=92.78  Aligned_cols=109  Identities=17%  Similarity=0.277  Sum_probs=88.5

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.++++..+||++++.       ++++|+++..+++......                     
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~-------~~~~G~v~~~~l~~~~~~~---------------------   53 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDL-------DNIIGVVHVKDLLRALAEG---------------------   53 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCC-------ceEEEEEEHHHHHHHHHcC---------------------
Confidence            578899999999999999999999999998751       2799999999988432100                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                      ....++.+++.     
T Consensus        54 ----------------------------------------------------------------~~~~~~~~~~~-----   64 (111)
T cd04590          54 ----------------------------------------------------------------EEDLDLRDLLR-----   64 (111)
T ss_pred             ----------------------------------------------------------------CCcCCHHHHhc-----
Confidence                                                                            00134555543     


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++.+.+||+++ +|+++|+||++|+++
T Consensus        65 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~  110 (111)
T cd04590          65 PPLFVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE  110 (111)
T ss_pred             CCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence            3778999999999999999999999999998 479999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.29  E-value=5.1e-11  Score=118.65  Aligned_cols=122  Identities=20%  Similarity=0.322  Sum_probs=101.0

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      +...+++++|.    +++.++.+++++.++++.|.+++++.+||+|++ ++++|+|+..|+++.+......      ...
T Consensus       332 l~~~~v~~im~----~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~------~~~  400 (454)
T TIGR01137       332 LKNATVKDLHL----PAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKAN------PDD  400 (454)
T ss_pred             hccCCHHHhCc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCC------cCC
Confidence            45678999998    559999999999999999998899999999984 7999999999999876542210      234


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l  341 (351)
                      ++.+    +|. .++.++++++++.++++.|.+++   .+||++ +|+++|+||.+||++.+
T Consensus       401 ~v~~----im~-~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       401 AVSK----VMS-KKFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CHHH----hcC-CCCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence            6777    576 78889999999999999998764   355655 69999999999999876

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.28  E-value=8.2e-11  Score=92.48  Aligned_cols=105  Identities=18%  Similarity=0.327  Sum_probs=89.3

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      +++++++.++++.++++.|.+++...+||+|+ +        +++|+++..|++..                        
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~--------~~~g~v~~~~l~~~------------------------   48 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-G--------KVVGIVSARDLLGK------------------------   48 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-C--------EEEEEEEHHHhhcc------------------------
Confidence            46788999999999999999888889999986 2        89999998887710                        


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                       ....++.++|.    
T Consensus        49 -----------------------------------------------------------------~~~~~~~~~~~----   59 (107)
T cd04610          49 -----------------------------------------------------------------DPDETVEEIMS----   59 (107)
T ss_pred             -----------------------------------------------------------------CccccHHHhCC----
Confidence                                                                             11235778887    


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++.++.+++++.++++.|.+++.+++||++++ |+++|+++..|+++
T Consensus        60 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~  106 (107)
T cd04610          60 KDLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR  106 (107)
T ss_pred             CCCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence            558889999999999999999999999999984 89999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=7.1e-11  Score=93.67  Aligned_cols=109  Identities=17%  Similarity=0.293  Sum_probs=90.7

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++..+++++++.+|++.|.++++..+||+|+++        +++|+++..|+..+...                      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~--------~~~G~v~~~dl~~~~~~----------------------   51 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEE--------KLKGVVTFTDILDLDLF----------------------   51 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCC--------CEEEEEehHHhHHHHhh----------------------
Confidence            567899999999999999999999999998743        89999999998743110                      


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    ......++.++|.    .
T Consensus        52 --------------------------------------------------------------~~~~~~~v~~~~~----~   65 (111)
T cd04626          52 --------------------------------------------------------------ESFLEKKVFNIVS----Q   65 (111)
T ss_pred             --------------------------------------------------------------cccccCcHHHHhc----C
Confidence                                                                          0012346788887    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++.+.+||+++  |+++|+||..|++.
T Consensus        66 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~  110 (111)
T cd04626          66 DVFYVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD  110 (111)
T ss_pred             CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence            6889999999999999999999999999986  58999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=8.4e-11  Score=92.54  Aligned_cols=104  Identities=27%  Similarity=0.437  Sum_probs=88.3

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCce
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  295 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~  295 (351)
                      ++.++.+++++.+++..|.+.+...+||++++ ++++|+++..+++...            ...++.+    +|. .++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~------------~~~~~~~----~~~-~~~~   63 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNP------------EEEQLAL----LMT-RDPP   63 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhcc------------ccchHHH----Hhc-CCCc
Confidence            36788999999999999998889999999984 7999999999996421            1123455    464 6788


Q ss_pred             EEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       296 ~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      ++..++++.+++..|.+++.+.+||+|+  |+++|+||..|+++
T Consensus        64 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          64 TVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             eECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            8999999999999999999999999996  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.28  E-value=3e-11  Score=119.74  Aligned_cols=120  Identities=23%  Similarity=0.394  Sum_probs=101.5

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCC--CCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT--PDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~--g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v  281 (351)
                      ..++.|.    .++.++++++++.++++.|.+++++++||+|++.  ++++|+|+.+|++....           ...++
T Consensus        81 ~~~~~~~----~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-----------~~~~V  145 (450)
T TIGR01302        81 RAENGII----SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD-----------KGKPV  145 (450)
T ss_pred             cccCcee----cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-----------CCCCH
Confidence            3455676    4589999999999999999999999999998732  68999999999964321           23467


Q ss_pred             cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .+    +|...+++++++++++.++++.|.+++.+.+||+|+ +|+++|+||.+||++.+..
T Consensus       146 ~d----vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~~~  202 (450)
T TIGR01302       146 SE----VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRRKF  202 (450)
T ss_pred             HH----hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhcccC
Confidence            77    574238899999999999999999999999999998 9999999999999998653

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.27  E-value=3.7e-11  Score=119.93  Aligned_cols=113  Identities=12%  Similarity=0.193  Sum_probs=94.6

Q ss_pred             cEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccccc
Q 018713           57 VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGT  136 (351)
Q Consensus        57 ~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (351)
                      ..++++++|+.+|++.|.++++..+||+|++..     .++++|+|+..||...                          
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~-----~gkLvGIVT~~DLr~~--------------------------  155 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTA-----HGKLLGIVTSRDYRIS--------------------------  155 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCc-----CCEEEEEEEcHHhhcc--------------------------
Confidence            358999999999999999999999999986210     1289999998887510                          


Q ss_pred             ccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCC
Q 018713          137 VGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAP  216 (351)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~  216 (351)
                                                                                   ......+|.++|++.  .+
T Consensus       156 -------------------------------------------------------------~~~~~~~V~dIMt~~--~~  172 (502)
T PRK07107        156 -------------------------------------------------------------RMSLDTKVKDFMTPF--EK  172 (502)
T ss_pred             -------------------------------------------------------------ccCCCCCHHHHhCCC--CC
Confidence                                                                         012346799999953  46


Q ss_pred             cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL  264 (351)
Q Consensus       217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l  264 (351)
                      ++++.+++++.+|++.|.+++++.+||+|+ +++++|+||.+|+++..
T Consensus       173 ~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        173 LVTANEGTTLKEANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             eEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhcc
Confidence            889999999999999999999999999997 47999999999998865

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.27  E-value=5.9e-11  Score=118.71  Aligned_cols=113  Identities=19%  Similarity=0.238  Sum_probs=97.9

Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCC
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  292 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~  292 (351)
                      .+++++++++++.++++.|.+++++.+||+|++  +++++|+||.+|+....    .       ...++.+    +|+ +
T Consensus       108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~----~-------~~~~V~e----IMt-~  171 (505)
T PLN02274        108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN----D-------RETKLSE----VMT-S  171 (505)
T ss_pred             CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc----c-------cCCcHHH----Hhc-c
Confidence            458999999999999999999999999999862  26999999999995322    1       3457888    575 4


Q ss_pred             C--ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          293 E--VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       293 ~--v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      +  ++++.+++++.++++.|.+++.+.+||+|+ +++++|+||.+||++.+...
T Consensus       172 ~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~~~p  224 (505)
T PLN02274        172 DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVKGYP  224 (505)
T ss_pred             CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhCc
Confidence            5  789999999999999999999999999998 89999999999999988653

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.26  E-value=6.6e-11  Score=117.83  Aligned_cols=127  Identities=16%  Similarity=0.231  Sum_probs=102.8

Q ss_pred             HHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713           36 TLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA  115 (351)
Q Consensus        36 ~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~  115 (351)
                      .+.+.|.++++.++|.   +++.++.+++++.+|++.|.++++..+||+|+++        +++|+|+..|++..+... 
T Consensus       327 ~~~~~l~~~~v~~im~---~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~-  394 (454)
T TIGR01137       327 TVFDVLKNATVKDLHL---PAPVTVHPTETVGDAIEILREYGFDQLPVVTEAG--------KVLGSVTLRELLSALFAG-  394 (454)
T ss_pred             cHHHHhccCCHHHhCc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC--------eEEEEEEHHHHHHHHhcc-
Confidence            3556799999999996   6799999999999999999999999999998653        799999999988533211 


Q ss_pred             HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhh
Q 018713          116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL  195 (351)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~  195 (351)
                                                                                                      
T Consensus       395 --------------------------------------------------------------------------------  394 (454)
T TIGR01137       395 --------------------------------------------------------------------------------  394 (454)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713          196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL  264 (351)
Q Consensus       196 ~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l  264 (351)
                        ......++.++|.    .++.++++++++.++++.|.+++   .+|+++ +++++|+||++|+++++
T Consensus       395 --~~~~~~~v~~im~----~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       395 --KANPDDAVSKVMS----KKFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             --CCCcCCCHHHhcC----CCCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence              1122347889998    55889999999999999998753   345554 36999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=1.3e-10  Score=92.26  Aligned_cols=110  Identities=20%  Similarity=0.321  Sum_probs=88.6

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      .+.++.+++++.+|++.|.+++...++|.+++         +++|+++..|+..++....                    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~dl~~~~~~~~--------------------   52 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERG---------ELVGLLTFREVLQAMAQHG--------------------   52 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCC---------EEEEEEEHHHHHHHHHhcC--------------------
Confidence            45689999999999999998888777776542         8999999999885432110                    


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    ......++.++|.    .
T Consensus        53 --------------------------------------------------------------~~~~~~~v~~~~~----~   66 (112)
T cd04625          53 --------------------------------------------------------------AGVLDTTVRAIMN----P   66 (112)
T ss_pred             --------------------------------------------------------------CchhcCCHHHHhC----C
Confidence                                                                          0112356889997    4


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++..++||+++  |+++|+||.+|+++
T Consensus        67 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~  111 (112)
T cd04625          67 EPIVASPDDSIDEVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK  111 (112)
T ss_pred             CCeEECCCCCHHHHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence            5889999999999999999999999999984  58999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=8.8e-11  Score=98.18  Aligned_cols=115  Identities=23%  Similarity=0.352  Sum_probs=92.7

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCC-Cch----------------------
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG-RDW----------------------  272 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~-~~~----------------------  272 (351)
                      ++.++++++++.++++.|.+.+++.+||+|+  ++++|+++..|+++++..... ...                      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET   79 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence            4778999999999999999999999999986  589999999999887643220 000                      


Q ss_pred             ---hhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          273 ---FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       273 ---l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                         .+.....++.+    +|. .++.++.+++++.+++..|.+++.+.+||+++  |+++|+|+..|+++
T Consensus        80 ~~~~~~~~~~~v~~----~~~-~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~  142 (143)
T cd04634          80 KRALTDAGKMKVRD----IMT-KKVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHhcCCHHH----HcC-CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence               00012334555    465 78899999999999999999999999999987  89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.26  E-value=1e-10  Score=93.94  Aligned_cols=120  Identities=21%  Similarity=0.291  Sum_probs=93.9

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++.+++++.+|++.|.++++..+||+|+ +        +++|+++..++..+........                 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~--------~~~G~i~~~~l~~~~~~~~~~~-----------------   55 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-G--------KLVGIVTDRDLKLASPSKATTL-----------------   55 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-C--------eEEEEEeHHHHHHhhhcccccc-----------------
Confidence            5678999999999999999999999999987 2        8999999999985432110000                 


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                        ...+..      ......++.++|.    .
T Consensus        56 --------------------------------------------------~~~~~~------~~~~~~~~~~~~~----~   75 (122)
T cd04585          56 --------------------------------------------------DIWELY------YLLSKIKVSDIMT----R   75 (122)
T ss_pred             --------------------------------------------------cchhhh------hhhcccCHHHhcc----C
Confidence                                                              000000      0023457888888    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.+++..|.+++.+.+||+++ +|+++|+||..|+++
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~  121 (122)
T cd04585          76 DPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR  121 (122)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence            5899999999999999999999999999987 479999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.26  E-value=6.4e-11  Score=118.61  Aligned_cols=119  Identities=22%  Similarity=0.411  Sum_probs=102.6

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~  283 (351)
                      .++++|.    .++.++++++++.++++.|.+++++++||+|+ +++++|+|+.+|+....    .       ...++.+
T Consensus        88 ~~~dim~----~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~~~~----~-------~~~~V~d  151 (486)
T PRK05567         88 RSESGVV----TDPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVRFET----D-------LSQPVSE  151 (486)
T ss_pred             hhhhccc----CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhhhcc----c-------CCCcHHH
Confidence            4678888    56999999999999999999999999999998 48999999999995421    1       2346777


Q ss_pred             cccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       284 L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                          +|..++++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||.+||++.+..
T Consensus       152 ----im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~~~  206 (486)
T PRK05567        152 ----VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAEEF  206 (486)
T ss_pred             ----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhhhC
Confidence                474367899999999999999999999999999998 8999999999999987643

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.26  E-value=1.1e-10  Score=93.69  Aligned_cols=113  Identities=15%  Similarity=0.246  Sum_probs=90.1

Q ss_pred             CcEEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713          216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~-~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v  294 (351)
                      ++.++++++++.++++.|...+ ++.+||+|+  |+++|+++..|+++.+.....   .+.....++.+    +|. .++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~---~~~~~~~~v~~----~~~-~~~   71 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYG---RALYGKKPVSE----VMD-PDP   71 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhh---HHHHcCCcHHH----hcC-CCc
Confidence            3667899999999999998776 889999987  689999999999876643110   00112446777    575 788


Q ss_pred             eEEcCCCcHHHHHHHHHhcCCC---eeEEEeCCCCeEEEEEeHHHHHH
Q 018713          295 ITIQSNELILEAFKRMKDNNIG---GIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       295 ~~V~~~~~l~~al~~m~~~~~~---~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +++.+++++.+++..|.+++..   ..+|+++ +|+++|+||..|+++
T Consensus        72 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~  118 (119)
T cd04598          72 LIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR  118 (119)
T ss_pred             EEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence            9999999999999999988753   3468887 799999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.25  E-value=1.4e-10  Score=92.68  Aligned_cols=109  Identities=17%  Similarity=0.222  Sum_probs=87.4

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++.+++++.+|++.|.++++..+||+|+...     .++++|+++..|++..                         
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~-----~~~~~G~v~~~dl~~~-------------------------   52 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKS-----GGKLLGIVTSRDIDFL-------------------------   52 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCc-----CCEEEEEEEhHHhhhh-------------------------
Confidence            5678999999999999999999999999986210     1289999998887611                         


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    . ....++.++|.    .
T Consensus        53 --------------------------------------------------------------~-~~~~~v~~~~~----~   65 (114)
T cd04602          53 --------------------------------------------------------------T-DSETPLSEVMT----P   65 (114)
T ss_pred             --------------------------------------------------------------h-ccCCCHHHhcC----C
Confidence                                                                          0 01245788887    3


Q ss_pred             CcEEecC--CCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVAT--DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~--~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      +..++..  ++++.++++.|.+++.+.+||++++ |+++|+||++|+++
T Consensus        66 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~  113 (114)
T cd04602          66 REVLVVAPTGITLEEANEILRESKKGKLPIVNDD-GELVALVTRSDLKK  113 (114)
T ss_pred             CceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence            3666655  9999999999999999999999874 79999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.24  E-value=1.7e-10  Score=91.00  Aligned_cols=109  Identities=20%  Similarity=0.311  Sum_probs=87.6

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.++++..+||+++ +        +++|+++..|+..++...                     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~--------~~~G~v~~~dl~~~~~~~---------------------   51 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-G--------RVVGSIDESDLLDALIEG---------------------   51 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-C--------eeEEEEeHHHHHHHHhcc---------------------
Confidence            5678999999999999999999999999986 3        799999999988543211                     


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                    ......++.++|.    .
T Consensus        52 --------------------------------------------------------------~~~~~~~~~~~~~----~   65 (110)
T cd04609          52 --------------------------------------------------------------KAKFSLPVREVMG----E   65 (110)
T ss_pred             --------------------------------------------------------------ccccCcCHHHHhc----C
Confidence                                                                          0011356788887    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG  263 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~  263 (351)
                      ++.++++++++.++++.|.+ . ..+||+++ +|+++|+||++|++++
T Consensus        66 ~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~-~~~~~Gvvt~~di~~~  110 (110)
T cd04609          66 PLPTVDPDAPIEELSELLDR-G-NVAVVVDE-GGKFVGIITRADLLKY  110 (110)
T ss_pred             CCceeCCCCcHHHHHHHHHh-C-CceeEEec-CCeEEEEEeHHHhhcC
Confidence            58899999999999999987 3 34788887 4799999999999754

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.7e-10  Score=93.06  Aligned_cols=121  Identities=13%  Similarity=0.188  Sum_probs=93.7

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.+|++.|.++++..+||+|+ +        +++|+++..++...+.........               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~--------~~~G~v~~~~l~~~~~~~~~~~~~---------------   57 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-N--------ELVGVISDRDYLKAISPFLGTAGE---------------   57 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-C--------eEEEEEEHHHHHHHHHHHhccccc---------------
Confidence            5678999999999999999999999999986 2        799999999998654321100000               


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                        ..+++ .       ....++.++|.    .
T Consensus        58 --------------------------------------------------~~~~~-~-------~~~~~~~~~~~----~   75 (122)
T cd04637          58 --------------------------------------------------TEKDL-A-------TLNRRAHQIMT----R   75 (122)
T ss_pred             --------------------------------------------------hHHHH-H-------HHHhHHHHhhc----C
Confidence                                                              00010 0       01245788887    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG  263 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~  263 (351)
                      ++..+.+++++.++++.|.+++...+||+|++ ++++|+++..|++++
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~~  122 (122)
T cd04637          76 DPITVSPDTPVDEASKLLLENSISCLPVVDEN-GQLIGIITWKDLLKY  122 (122)
T ss_pred             CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhhC
Confidence            59999999999999999999999999999874 799999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.24  E-value=1.2e-10  Score=116.56  Aligned_cols=116  Identities=11%  Similarity=0.114  Sum_probs=98.0

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      ++++++++++|+.+|++.|.++++..+||+|++..     .++++|+|+..||...                        
T Consensus       108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~-----~GklvGIVT~~DL~~v------------------------  158 (505)
T PLN02274        108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTM-----GSKLLGYVTKRDWDFV------------------------  158 (505)
T ss_pred             CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCc-----CCeEEEEEEHHHHhhc------------------------
Confidence            68899999999999999999999999999986310     1289999999887610                        


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                     . ....+|.++|++.  
T Consensus       159 ---------------------------------------------------------------~-~~~~~V~eIMt~~--  172 (505)
T PLN02274        159 ---------------------------------------------------------------N-DRETKLSEVMTSD--  172 (505)
T ss_pred             ---------------------------------------------------------------c-ccCCcHHHHhccC--
Confidence                                                                           0 1246799999844  


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      .+++++.+++++.++++.|.+++.+.+||+|++ ++++|+||++|+++.+..
T Consensus       173 ~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        173 DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhC
Confidence            448899999999999999999999999999984 799999999999998853

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.24  E-value=1.5e-10  Score=91.40  Aligned_cols=107  Identities=21%  Similarity=0.337  Sum_probs=88.1

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      ++++++++++++.++++.|.+++...+||+|+++        +++|+++..++...                        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~~l~~~------------------------   49 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDG--------KLVGIVTNRDLRFE------------------------   49 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCC--------EEEEEEEhhHeeec------------------------
Confidence            4678899999999999999999999999998753        89999998776510                        


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                     . ....++.++|.    
T Consensus        50 ---------------------------------------------------------------~-~~~~~v~~~~~----   61 (110)
T cd04601          50 ---------------------------------------------------------------T-DLDKPVSEVMT----   61 (110)
T ss_pred             ---------------------------------------------------------------c-cCCCCHHHhcc----
Confidence                                                                           0 12346788887    


Q ss_pred             CCcEEecC-CCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          215 APFLPVAT-DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       215 ~~~~~v~~-~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++..+.+ ++++.++++.|.+.+.+.+||+++ +|+++|+||.+|+++
T Consensus        62 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~  109 (110)
T cd04601          62 PENLLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK  109 (110)
T ss_pred             cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence            33566666 999999999999999999999997 479999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.1e-10  Score=93.87  Aligned_cols=119  Identities=18%  Similarity=0.329  Sum_probs=93.5

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++.+++++.+|++.|.++++..+||+|+  +       +++|+++..++...+........                
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~-------~~~G~v~~~~l~~~~~~~~~~~~----------------   56 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--G-------KLVGIVTEKDIADALRSFRPLVR----------------   56 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--C-------EEEEEEchHHHHHhhhhhhhccc----------------
Confidence            5678999999999999999999999999986  2       89999999999854432110000                


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                         ...    .  .......++.++|.    .
T Consensus        57 ---------------------------------------------------~~~----~--~~~~~~~~~~~~~~----~   75 (121)
T cd04633          57 ---------------------------------------------------DRH----Q--ERRIRNLPVSDIMT----R   75 (121)
T ss_pred             ---------------------------------------------------chh----h--hhhhhccCHHHHcc----C
Confidence                                                               000    0  01123457888888    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+.+.+.+||+|+  |+++|+|+..|+++
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          76 PVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            5899999999999999999999999999986  58999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=3.4e-10  Score=88.69  Aligned_cols=111  Identities=22%  Similarity=0.354  Sum_probs=91.0

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++++++++.++++.|.+++...+||+++++        +++|+++..+++.+......                   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~G~v~~~~l~~~~~~~~~-------------------   54 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDG--------RLVGIVTERDLLRALAEGGL-------------------   54 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCC--------CEEEEEeHHHHHHHHHhccC-------------------
Confidence            567899999999999999999999999998753        89999999999855322100                   


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                      .....+.++|.    .
T Consensus        55 ----------------------------------------------------------------~~~~~~~~~~~----~   66 (113)
T cd02205          55 ----------------------------------------------------------------DPLVTVGDVMT----R   66 (113)
T ss_pred             ----------------------------------------------------------------CccccHHHHhc----C
Confidence                                                                            00112567777    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+.+.+.+||+|++ ++++|+++..|+++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  112 (113)
T cd02205          67 DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR  112 (113)
T ss_pred             CceecCCCcCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence            58889999999999999999999999999984 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.22  E-value=2.9e-10  Score=90.76  Aligned_cols=108  Identities=22%  Similarity=0.397  Sum_probs=92.4

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      ..++++.++.++.+|+..|.++++..+||.+.+         +++|+++..|++..+....                   
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~---------~l~Giit~~di~~~~~~~~-------------------   58 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDG---------KLVGIITERDILRALAAGG-------------------   58 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC---------EEEEEEEHHHHHHHHhccC-------------------
Confidence            578899999999999999999999999999864         6999999999995532220                   


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                       ....++.++|+    
T Consensus        59 -----------------------------------------------------------------~~~~~v~~v~~----   69 (117)
T COG0517          59 -----------------------------------------------------------------KRLLPVKEVMT----   69 (117)
T ss_pred             -----------------------------------------------------------------CccccHHHhcc----
Confidence                                                                             01116888898    


Q ss_pred             CCcEEecCCCCHHHHHHHHHh-CCCCEEEEEcCCCC-CEEEEEeHHHH
Q 018713          215 APFLPVATDDSMLSVLLLLSK-YRLRNVPIIEPGTP-DIKNYITQSAV  260 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~-~~~~~vpVvd~~~g-~liGiIt~~di  260 (351)
                      .++.++.++.++.++++.|.+ ++++++||++++ + +++|++|.+|+
T Consensus        70 ~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di  116 (117)
T COG0517          70 KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDD-GGKLVGIITLSDI  116 (117)
T ss_pred             CCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHc
Confidence            569999999999999999999 799999999984 5 99999999997

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.21  E-value=9.3e-11  Score=117.20  Aligned_cols=118  Identities=16%  Similarity=0.197  Sum_probs=99.9

Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      .++.|.    .+++++++++++.+++++|.+++++.+||+|++  +++++|+||.+|+.... .          ...++.
T Consensus        98 ~e~g~i----~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~----------~~~~V~  162 (495)
T PTZ00314         98 FENGFI----MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-D----------KSTPVS  162 (495)
T ss_pred             cccccc----cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-c----------CCCCHH
Confidence            445666    448899999999999999999999999999873  26899999999986211 1          245688


Q ss_pred             ccccCccCCC--CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          283 DLGLPFMSSD--EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       283 ~L~~~~m~~~--~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      +    +|+ +  +++++++++++.+++++|.+++...+||+|+ +++++|+||.+||++....
T Consensus       163 d----iMt-~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~~~  219 (495)
T PTZ00314        163 E----VMT-PREKLVVGNTPISLEEANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNRGY  219 (495)
T ss_pred             H----hhC-CcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhcccC
Confidence            8    585 5  7899999999999999999999999999998 8999999999999987543

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.20  E-value=4.4e-10  Score=90.31  Aligned_cols=119  Identities=21%  Similarity=0.276  Sum_probs=92.8

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++++++++.+|++.|.+++.+.+||+|+++        +++|+++..++..........                  
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~--------~~~G~v~~~~l~~~~~~~~~~------------------   55 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEG--------RLVGIVTDRDLRDASPSPFTT------------------   55 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCC--------cEEEEEEHHHHHHHhhhhccc------------------
Confidence            567899999999999999999999999999753        899999999987432111000                  


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                           +....+   ......++.++|.    .
T Consensus        56 -----------------------------------------------------~~~~~~---~~~~~~~v~~~~~----~   75 (121)
T cd04584          56 -----------------------------------------------------LSEHEL---YLLLKMPVKEIMT----K   75 (121)
T ss_pred             -----------------------------------------------------chhhhh---hhhcCcCHHHHhh----C
Confidence                                                                 000000   0133467889998    5


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++.+.+||+++  ++++|+++..|+++
T Consensus        76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~  120 (121)
T cd04584          76 DVITVHPLDTVEEAALLMREHRIGCLPVVED--GRLVGIITETDLLR  120 (121)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence            5899999999999999999999999999986  58999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.18  E-value=7.4e-10  Score=110.74  Aligned_cols=114  Identities=18%  Similarity=0.191  Sum_probs=96.6

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      .+++++++++|+.+|++.|.++++..+||+|++..     .++++|+|+..|+...                        
T Consensus       104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~-----~gkLvGIVt~~DL~~~------------------------  154 (495)
T PTZ00314        104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKV-----GGKLLGIVTSRDIDFV------------------------  154 (495)
T ss_pred             cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCcc-----CCeEEEEEEHHHHhhc------------------------
Confidence            67789999999999999999999999999986411     1389999999887610                        


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                      .....+|.++|++.  
T Consensus       155 ----------------------------------------------------------------~~~~~~V~diMt~~--  168 (495)
T PTZ00314        155 ----------------------------------------------------------------KDKSTPVSEVMTPR--  168 (495)
T ss_pred             ----------------------------------------------------------------ccCCCCHHHhhCCc--
Confidence                                                                            01246799999842  


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL  264 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l  264 (351)
                      .+++++++++++.+++++|.+++++.+||+|++ ++++|+||++|+++..
T Consensus       169 ~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        169 EKLVVGNTPISLEEANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNR  217 (495)
T ss_pred             CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcc
Confidence            368999999999999999999999999999984 8999999999998775

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.18  E-value=8.7e-11  Score=109.66  Aligned_cols=129  Identities=16%  Similarity=0.178  Sum_probs=110.7

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      +...+|+|+|.+.  ..+..+..+++..++++.+....+.++|++.++-+.++|+++.+|+++++.+....      ...
T Consensus       197 Le~~tV~DIMvpR--~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~------~k~  268 (423)
T COG4536         197 LENLTVSDIMVPR--NEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEF------TKE  268 (423)
T ss_pred             cccceeeeeeccc--cceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcc------cHh
Confidence            6678999999976  89999999999999999999999999999976556799999999999999776421      222


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .+..+    .  .++++|++.+++.+.+..|.+++.+.-.|||+ .|.+.|+||.+||++-+-+
T Consensus       269 d~~~~----a--~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEIVG  325 (423)
T COG4536         269 DILRA----A--DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEIVG  325 (423)
T ss_pred             HHHHH----h--cCCeecCCCCcHHHHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHHhc
Confidence            33331    1  68899999999999999999999998889999 9999999999999987643

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.18  E-value=3.2e-10  Score=115.44  Aligned_cols=131  Identities=18%  Similarity=0.311  Sum_probs=104.3

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCC------------
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR------------  270 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~------------  270 (351)
                      .+|+++|.    +++.++++++++.+|++.|.+++++.+||+|++ |+++|+||..|+.+.+......            
T Consensus        68 ~~V~dim~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~  142 (546)
T PRK14869         68 PQVRDLEI----DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN  142 (546)
T ss_pred             CcHHHhcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence            68999999    569999999999999999999999999999984 8999999999998865432100            


Q ss_pred             ----------------c---------------hhhhh-------------------------------------------
Q 018713          271 ----------------D---------------WFDII-------------------------------------------  276 (351)
Q Consensus       271 ----------------~---------------~l~~l-------------------------------------------  276 (351)
                                      .               .++.+                                           
T Consensus       143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~  222 (546)
T PRK14869        143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK  222 (546)
T ss_pred             HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                            0               00000                                           


Q ss_pred             ---------------------ccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHH
Q 018713          277 ---------------------ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR  335 (351)
Q Consensus       277 ---------------------~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~  335 (351)
                                           ...++++    +|++++++++++++++.++.+.|.+++.+.+||+|+ +|+++|+||..
T Consensus       223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~----iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-~g~lvGiit~~  297 (546)
T PRK14869        223 ENGVTVISTPYDTFTTARLINQSIPVSY----IMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-DGKVVGVISRY  297 (546)
T ss_pred             hCCCeEEEecccHHHHHHHhhcCCCHHH----hccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC-CCCEEEEEEHH
Confidence                                 0011111    464257889999999999999999999999999998 89999999999


Q ss_pred             HHHHHhcC
Q 018713          336 DIRHLLLK  343 (351)
Q Consensus       336 DIl~~l~~  343 (351)
                      |+++....
T Consensus       298 dl~~~~~~  305 (546)
T PRK14869        298 HLLSPVRK  305 (546)
T ss_pred             HhhccccC
Confidence            99987654

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.17  E-value=4.8e-10  Score=111.25  Aligned_cols=121  Identities=17%  Similarity=0.261  Sum_probs=99.7

Q ss_pred             ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713           45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV  124 (351)
Q Consensus        45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~  124 (351)
                      ...+.+.   ++++++++++|+.+|++.|.+++++.+||+|++..     .++++|+|+..|++..              
T Consensus        81 ~~~~~~~---~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~-----~~~lvGIVt~rDL~~~--------------  138 (450)
T TIGR01302        81 RAENGII---SDPVTISPETTVADVLELMERKGISGIPVVEDGDM-----TGKLVGIITKRDIRFV--------------  138 (450)
T ss_pred             cccCcee---cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCC-----CCeEEEEEEHHHHhhh--------------
Confidence            3445554   68899999999999999999999999999987520     0289999999888621              


Q ss_pred             ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713          125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~  204 (351)
                                                                                               . ....+
T Consensus       139 -------------------------------------------------------------------------~-~~~~~  144 (450)
T TIGR01302       139 -------------------------------------------------------------------------K-DKGKP  144 (450)
T ss_pred             -------------------------------------------------------------------------h-cCCCC
Confidence                                                                                     0 12357


Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      +.++|++   .+++++++++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++.+.
T Consensus       145 V~dvm~~---~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       145 VSEVMTR---EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRRK  201 (450)
T ss_pred             HHHhhCC---CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhccc
Confidence            8889972   258999999999999999999999999999984 89999999999998763

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.17  E-value=2.4e-10  Score=105.76  Aligned_cols=119  Identities=18%  Similarity=0.272  Sum_probs=106.9

Q ss_pred             CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      +.|.+++. |..+.-.+.+++++.+-.++-.+.+..++||+|...        +++|+|+..|+.               
T Consensus       188 ~~Vedi~~-P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~--------kvvGvVt~rDv~---------------  243 (432)
T COG4109         188 ITVEDIMT-PLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSM--------KVVGVVTMRDVL---------------  243 (432)
T ss_pred             eeHHHhcc-ccccceeccccccHHHHHHHHHHcCCCccceecccc--------eEEEEEEehhhh---------------
Confidence            66788886 667788899999999999999999999999999864        899999998877               


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                                ...+..
T Consensus       244 --------------------------------------------------------------------------~~~~~t  249 (432)
T COG4109         244 --------------------------------------------------------------------------DKKPST  249 (432)
T ss_pred             --------------------------------------------------------------------------cCCCCc
Confidence                                                                                      235668


Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      ++..+|+    ++++++.+.+++..+.+.|.-.++.-+||+|+ +.+++|+||++|+++.+.
T Consensus       250 ~ieKVMt----knp~tv~~~tsVAsvaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~lq  306 (432)
T COG4109         250 TIEKVMT----KNPITVRAKTSVASVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             cHHHHhc----cCCeeecccchHHHHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHHHH
Confidence            8999999    55999999999999999999999999999998 589999999999999885

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.16  E-value=1e-09  Score=108.31  Aligned_cols=166  Identities=15%  Similarity=0.182  Sum_probs=123.9

Q ss_pred             HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713           40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA  119 (351)
Q Consensus        40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~  119 (351)
                      .|++.++.++|. |+.+++.++.+.++.++.+.+.+++.+++||++++       .++++|++...|++........   
T Consensus       202 ~l~~~~v~eiMt-PR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~-------~D~iiGiv~~Kdll~~~~~~~~---  270 (429)
T COG1253         202 DLDDRTVREIMT-PRTDIVALDLTDTVEELIELILESGHSRIPVYDGD-------LDNIIGIVHVKDLLRALLDGQS---  270 (429)
T ss_pred             ccCCcEeeeEee-ecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC-------CCcEEEEEEHHHHHHHHhcCcc---
Confidence            467899999997 78999999999999999999999999999999944       4589999999999954322100   


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                                                                                                      
T Consensus       271 --------------------------------------------------------------------------------  270 (429)
T COG1253         271 --------------------------------------------------------------------------------  270 (429)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                        .......+     .+++.+++++++.++++.|++.+.|-..|+|+. |.+.|+||.+|+++.+.... .+..+.....
T Consensus       271 --~~~~~~~~-----~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy-G~~~GlVTleDIiEeIvGei-~de~d~~~~~  341 (429)
T COG1253         271 --DLDLRVLV-----RPPLFVPETLSLSDLLEEFREERTHMAIVVDEY-GGVEGLVTLEDIIEEIVGEI-PDEHDEDEEE  341 (429)
T ss_pred             --ccchhhcc-----cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC-CCeEEEeEHHHHHHHHhCCC-cCcccccccc
Confidence              00001111     258899999999999999999999999999996 89999999999999987543 2222211111


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHH
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMK  311 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~  311 (351)
                      .+-..    .. .. ..++..+++.+..+.+-
T Consensus       342 ~~~~~----~~-~~-~~v~G~~~l~e~~~~l~  367 (429)
T COG1253         342 DIIQR----DD-DG-WLVDGRVPLEELEELLG  367 (429)
T ss_pred             cceEe----cC-Cc-EEEeccccHHHHHHHhC
Confidence            22221    11 34 67888888888877653

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.16  E-value=5.1e-10  Score=87.94  Aligned_cols=100  Identities=20%  Similarity=0.235  Sum_probs=84.5

Q ss_pred             EEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccccc
Q 018713           58 IEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTV  137 (351)
Q Consensus        58 i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (351)
                      +++++++++.+|++.|.+.+...+||+|+ +        +++|+++..|+...                           
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~--------~~~G~v~~~~l~~~---------------------------   47 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-N--------KFLGAVYLKDIENA---------------------------   47 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-C--------EEEEEEEHHHHhhh---------------------------
Confidence            57899999999999999999999999986 3        89999998887621                           


Q ss_pred             cccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCc
Q 018713          138 GALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPF  217 (351)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~  217 (351)
                                                                                     ...++.++|.    .++
T Consensus        48 ---------------------------------------------------------------~~~~~~~~~~----~~~   60 (104)
T cd04594          48 ---------------------------------------------------------------TYGDVVDYIV----RGI   60 (104)
T ss_pred             ---------------------------------------------------------------cccchhhhhh----cCC
Confidence                                                                           0123566776    448


Q ss_pred             EEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       218 ~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++.+++++.++++.|.+++...+||+++  |+++|++|..|++.
T Consensus        61 ~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~  103 (104)
T cd04594          61 PYVRLTSTAEEAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD  103 (104)
T ss_pred             cEEcCCCCHHHHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence            89999999999999999999999999984  69999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=9.9e-10  Score=91.77  Aligned_cols=140  Identities=21%  Similarity=0.329  Sum_probs=95.2

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      +++++++++++.++++.|.++++..+||+|+ +        +++|+++..|+..++.........               
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~--------~~~G~v~~~dl~~~~~~~~~~~~~---------------   57 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-G--------KLVGIVSESDILKLLVTHDPSGNL---------------   57 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-C--------eEEEEecHHHHHHHHHhccCcccc---------------
Confidence            5678999999999999999999999999986 2        799999999998655332100000               


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhh-hHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLH-EDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                ...+....                      ...+..  +... .+......   .....++.++|.    
T Consensus        58 ----------~~~~~~~~----------------------~~~~~~--~~~~~~~~~~~~~---~~~~~~v~~~~~----   96 (143)
T cd04634          58 ----------WLPSPLEL----------------------IELPLR--EFINWEETKRALT---DAGKMKVRDIMT----   96 (143)
T ss_pred             ----------ccCCccee----------------------eeccch--heeehHHHHHHHH---HHhcCCHHHHcC----
Confidence                      00000000                      000000  0000 01111111   123467889998    


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++.++++++++.+++..|.+.+.+.+||+++  ++++|+++..|+++
T Consensus        97 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~  142 (143)
T cd04634          97 KKVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE  142 (143)
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            55999999999999999999999999999986  58999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.13  E-value=4.2e-10  Score=104.20  Aligned_cols=113  Identities=16%  Similarity=0.167  Sum_probs=94.8

Q ss_pred             CccccCCCCCCCC-cEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713           44 IPVLSFPNVPGGR-VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF  122 (351)
Q Consensus        44 ~~v~~~~~~~~~~-~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~  122 (351)
                      +++.++|.   ++ +.++.+++++.+|++.|.+.++..+||+|+++        +++|+|+..|+..++..         
T Consensus       155 ~~v~~im~---~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g--------~~~Givt~~dl~~~~~~---------  214 (268)
T TIGR00393       155 VKVKDLMQ---TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENN--------QLVGVFTDGDLRRALLG---------  214 (268)
T ss_pred             hhHHHHhC---CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCC--------CEEEEEEcHHHHHHHhc---------
Confidence            67888886   44 88999999999999999999999999998753        89999999998742110         


Q ss_pred             ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713          123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS  202 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~  202 (351)
                                                                                                 .....
T Consensus       215 ---------------------------------------------------------------------------~~~~~  219 (268)
T TIGR00393       215 ---------------------------------------------------------------------------GGSLK  219 (268)
T ss_pred             ---------------------------------------------------------------------------CCccc
Confidence                                                                                       11234


Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEe
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYIT  256 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt  256 (351)
                      .++.++|.    .++.++.+++++.++++.|.+++.+++||+|++ |+++|+|+
T Consensus       220 ~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~GvI~  268 (268)
T TIGR00393       220 SEVRDFMT----LGPKTFKLDALLLEALEFLERRKITSLVVVDDH-NKVLGVLH  268 (268)
T ss_pred             CcHHHhCC----CCCeEECCCCcHHHHHHHHHHcCCcEEEEECCC-CeEEEEEC
Confidence            67899998    558899999999999999999999999999984 79999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.13  E-value=3.8e-10  Score=110.60  Aligned_cols=123  Identities=14%  Similarity=0.317  Sum_probs=107.6

Q ss_pred             CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch
Q 018713          198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW  272 (351)
Q Consensus       198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~  272 (351)
                      ..+...+++.+|+    ..++++.++.|+.+++..+.+.     .+..++|+|+ ++++.|+++.++++..-        
T Consensus       127 l~y~e~taG~~Mt----~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvsl~~Ll~a~--------  193 (451)
T COG2239         127 LSYPEDTAGRIMT----TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE-KGKLLGVVSLRDLLTAE--------  193 (451)
T ss_pred             cCCChhhhhccce----eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC-ccceEEEeeHHHHhcCC--------
Confidence            4578889999999    5599999999999999999853     5789999999 48999999999986432        


Q ss_pred             hhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       273 l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                          .+.++++    +|. +.+++|..+++..++.+.|.+++.-.+||||+ +++++|+||..|++..+.+
T Consensus       194 ----~~~~i~~----im~-~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         194 ----PDELLKD----LME-DDVVSVLADDDQEEVARLFEKYDLLAVPVVDE-DNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             ----cHhHHHH----Hhc-ccceeecccCCHHHHHHHHHHhCCeecceECC-CCceeeeeeHHHHHHHHHH
Confidence                3456777    586 77999999999999999999999999999999 9999999999999988754

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=1.6e-09  Score=85.24  Aligned_cols=104  Identities=17%  Similarity=0.308  Sum_probs=86.6

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG  135 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (351)
                      ++.++++++++.+++..|.+++...+||+++++        +++|+++..+++..                         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~g~v~~~~l~~~-------------------------   48 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSG--------ELVGIITRKDLLRN-------------------------   48 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCC--------cEEEEEEHHHHHhc-------------------------
Confidence            467899999999999999999999999998753        79999998887620                         


Q ss_pred             cccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCC
Q 018713          136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA  215 (351)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~  215 (351)
                                                                                      ....++.++|.    .
T Consensus        49 ----------------------------------------------------------------~~~~~~~~~~~----~   60 (106)
T cd04638          49 ----------------------------------------------------------------PEEEQLALLMT----R   60 (106)
T ss_pred             ----------------------------------------------------------------cccchHHHHhc----C
Confidence                                                                            01124567776    4


Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      ++.++.+++++.++++.|.+++.+.+||+|+  |+++|++|..|+++
T Consensus        61 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          61 DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             CCceECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            5888999999999999999999999999985  48999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.10  E-value=1.6e-09  Score=86.85  Aligned_cols=113  Identities=14%  Similarity=0.121  Sum_probs=88.4

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcC-ceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECN-ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~-i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      ++.++++++++.+|++.|.+.+ +..+||+|+ +        +++|+++..++...+....                   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~--------~~~G~v~~~~l~~~~~~~~-------------------   53 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-G--------RPVGLIMREALMELLSTPY-------------------   53 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-C--------eeEEEEEHHHHHHHHhchh-------------------
Confidence            5667899999999999998877 899999997 4        8999999999874321110                   


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                          ..         ......++.++|.    
T Consensus        54 ----------------------------------------------------~~---------~~~~~~~v~~~~~----   68 (119)
T cd04598          54 ----------------------------------------------------GR---------ALYGKKPVSEVMD----   68 (119)
T ss_pred             ----------------------------------------------------hH---------HHHcCCcHHHhcC----
Confidence                                                                00         1123457889998    


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCC---EEEEEcCCCCCEEEEEeHHHHHH
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLR---NVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~---~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++..+.+++++.+++..|.+++..   ..+|+++ +|+++|+||..|+++
T Consensus        69 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~  118 (119)
T cd04598          69 PDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR  118 (119)
T ss_pred             CCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence            5599999999999999999988753   4467877 489999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.10  E-value=1.2e-09  Score=90.40  Aligned_cols=106  Identities=15%  Similarity=0.131  Sum_probs=79.3

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCc-hh-h---hhccCcccccc---c-
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-WF-D---IIASQPISDLG---L-  286 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~-~l-~---~l~~~~v~~L~---~-  286 (351)
                      .+.++.+++++.+|++.|.+++++.+||+|++ |+++|+||..|+++++....... .. +   ......+.++-   + 
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~   80 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS   80 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence            37889999999999999998999999999984 89999999999998875432110 00 0   00011122210   0 


Q ss_pred             -CccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeC
Q 018713          287 -PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG  323 (351)
Q Consensus       287 -~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~  323 (351)
                       ..|. .+++++++++++.+|++.|.+++++++||+|+
T Consensus        81 ~~~~~-~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          81 YGGQE-CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             hcccC-CCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence             0133 67889999999999999999999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.07  E-value=1.1e-09  Score=86.56  Aligned_cols=100  Identities=21%  Similarity=0.296  Sum_probs=84.4

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCC--CCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccc
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPD--APSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG  133 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~--~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (351)
                      .+..+++++++.++.+.|.+++...+||+|+.  .+       +++|+|+..|+....                      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~-------~~~G~v~~~dl~~~~----------------------   53 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP-------RLVGYILRSQLVVAL----------------------   53 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC-------EEEEEEeHHHHHHHH----------------------
Confidence            56789999999999999999999999999873  22       899999998876321                      


Q ss_pred             cccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccC
Q 018713          134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR  213 (351)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~  213 (351)
                                                                                   .  .         +|.   
T Consensus        54 -------------------------------------------------------------~--~---------~m~---   58 (105)
T cd04591          54 -------------------------------------------------------------K--N---------YID---   58 (105)
T ss_pred             -------------------------------------------------------------H--H---------hcc---
Confidence                                                                         0  0         566   


Q ss_pred             CCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       214 ~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                       .++.++++++++.++++.|.+++.+.+||+++  |+++|+||.+|+++
T Consensus        59 -~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~  104 (105)
T cd04591          59 -PSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK  104 (105)
T ss_pred             -CCCceECCCCcHHHHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence             45889999999999999999999999999963  69999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.02  E-value=7e-10  Score=97.49  Aligned_cols=127  Identities=12%  Similarity=0.212  Sum_probs=110.4

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      .....|+|||.+.  ...+++..+.++.+++..+....++++||+.++.+.+.|++.-+|+++++.+...        .-
T Consensus        64 iadl~vrDiMIPR--SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~--------~F  133 (293)
T COG4535          64 IADLRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE--------PF  133 (293)
T ss_pred             HHHhhHhhhcccH--HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc--------cc
Confidence            5567899999976  8999999999999999999999999999997766789999999999999866532        12


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .+.++    .  +|.+.|+++..+.-.++.|..++-|-..|+|+ .|.+.|+||..||++.+-+
T Consensus       134 ~i~~l----L--RPav~VPESKrvd~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIVG  190 (293)
T COG4535         134 DIKEL----L--RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIVG  190 (293)
T ss_pred             cHHHh----c--ccceecccchhHHHHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHhc
Confidence            35552    3  78899999999999999999999998889999 9999999999999988643

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.01  E-value=4.6e-09  Score=87.00  Aligned_cols=48  Identities=19%  Similarity=0.252  Sum_probs=43.4

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHH
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWV  111 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~  111 (351)
                      +++++.+++++.+|++.|.++++.++||+|+++        +++|+|+..|++.++
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g--------~l~Givt~~Dl~~~~   49 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDD--------FLEGILTLGDIQRFL   49 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCC--------eEEEEEEHHHHHHHH
Confidence            578899999999999999999999999999754        899999999999755

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.96  E-value=1.1e-08  Score=95.70  Aligned_cols=166  Identities=14%  Similarity=0.197  Sum_probs=126.6

Q ss_pred             HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713           40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA  119 (351)
Q Consensus        40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~  119 (351)
                      .|++++|+|+|. |++.+..++.+++..+.++.+.+.-..++||+..+       .++++|++...|+++++.+..+   
T Consensus       196 DLe~~tV~DIMv-pR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~-------~DnIiGvlh~r~llr~l~e~~~---  264 (423)
T COG4536         196 DLENLTVSDIMV-PRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD-------LDNIIGVLHVRDLLRLLNEKNE---  264 (423)
T ss_pred             ccccceeeeeec-cccceeeecCCCCHHHHHHHHhhCCCCceeeecCC-------hhHhhhhhhHHHHHHHhhccCc---
Confidence            467899999996 78999999999999999999999999999999876       3489999999998876654421   


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                                                                                                      
T Consensus       265 --------------------------------------------------------------------------------  264 (423)
T COG4536         265 --------------------------------------------------------------------------------  264 (423)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                         .+-.++++-.  .+++.+++++++.+-+..|.+++-+-..|+|+. |.+.|+||.+||++.+..... +.    ...
T Consensus       265 ---~~k~d~~~~a--~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY-G~i~GLVTLEDIlEEIVGdft-de----~d~  333 (423)
T COG4536         265 ---FTKEDILRAA--DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY-GDIQGLVTLEDILEEIVGDFT-DE----HDT  333 (423)
T ss_pred             ---ccHhHHHHHh--cCCeecCCCCcHHHHHHHHHHhcceEEEEEecc-CcEEeeeeHHHHHHHHhcccc-cc----Ccc
Confidence               1112333222  458899999999999999999999999999997 999999999999998865432 11    222


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHH
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRM  310 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m  310 (351)
                      ...++   .-..+.-+.++.+.++.+.-+.|
T Consensus       334 ~~~ev---~~q~dgs~iidGs~~iRdlNr~l  361 (423)
T COG4536         334 LAKEV---IPQSDGSFIIDGSANVRDLNRAL  361 (423)
T ss_pred             cchhh---cccCCCcEEEeCCCcHHHHHHhc
Confidence            33332   11124556678888888876544

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.91  E-value=6e-09  Score=72.78  Aligned_cols=56  Identities=23%  Similarity=0.457  Sum_probs=51.9

Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      |+++|+    +++.++++++++.++++.|.+++++++||+|++ |+++|+||.+|+++++.
T Consensus         1 v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMT----PPPITVSPDDSLEEALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSB----SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred             CeECCc----CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhhh
Confidence            578999    569999999999999999999999999999984 89999999999999874

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.84  E-value=9.6e-09  Score=71.71  Aligned_cols=53  Identities=34%  Similarity=0.543  Sum_probs=49.9

Q ss_pred             ccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713          288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (351)
Q Consensus       288 ~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~  342 (351)
                      +|. ++++++++++++.++++.|.+++.+++||+|+ +|+++|+||.+||++++.
T Consensus         4 ~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    4 IMT-PPPITVSPDDSLEEALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HSB-SSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHHHH
T ss_pred             CCc-CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhhhh
Confidence            576 79999999999999999999999999999998 899999999999999874

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.82  E-value=3.6e-08  Score=86.87  Aligned_cols=166  Identities=15%  Similarity=0.212  Sum_probs=126.2

Q ss_pred             HHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHH
Q 018713           39 AAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA  118 (351)
Q Consensus        39 ~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~  118 (351)
                      ..++...|.++|- |++..++++.+.++.+++..+.+...+++||+.++       ..++.||+-..|++.++...    
T Consensus        62 m~iadl~vrDiMI-PRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed-------kD~v~GIL~AKDLL~~~~~~----  129 (293)
T COG4535          62 MDIADLRVRDIMI-PRSQMITLKRNQTLDECLDVIIESAHSRFPVISED-------KDHVEGILLAKDLLPFMRSD----  129 (293)
T ss_pred             HHHHHhhHhhhcc-cHHHheeccccCCHHHHHHHHHHhccccCCcccCC-------chhhhhhhhHHHHHHHhcCC----
Confidence            3567788999996 78999999999999999999999999999999876       34899999888888653211    


Q ss_pred             hhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcC
Q 018713          119 AAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEE  198 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~  198 (351)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (293)
T COG4535         130 --------------------------------------------------------------------------------  129 (293)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713          199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (351)
Q Consensus       199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~  278 (351)
                       .....+++++.     |.+.|++...+...++.+..++.|-+.|+|+. |.+-|.||.+|++..+.... .++++.-..
T Consensus       130 -~~~F~i~~lLR-----Pav~VPESKrvd~lLkeFR~~RnHMAIViDEf-GgVsGLVTIEDiLEqIVGdI-EDE~Deee~  201 (293)
T COG4535         130 -AEPFDIKELLR-----PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEF-GGVSGLVTIEDILEQIVGDI-EDEYDEEED  201 (293)
T ss_pred             -cccccHHHhcc-----cceecccchhHHHHHHHHHhhcCceEEEEecc-CCeeeeEEHHHHHHHHhccc-ccccchhhh
Confidence             11134555554     57889999999999999999999999999996 88999999999999987554 233322222


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHH
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRM  310 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m  310 (351)
                      ..+..+      .+.-+.|..-+++.+--+.|
T Consensus       202 ~dI~~l------s~~~~~VrALT~IedFNe~F  227 (293)
T COG4535         202 ADIRQL------SRHTWRVRALTEIEDFNEAF  227 (293)
T ss_pred             hhhHhh------cCCceEEEecccHHHHHHHh
Confidence            224442      24556677777776665554

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.79  E-value=4.2e-08  Score=96.35  Aligned_cols=117  Identities=19%  Similarity=0.290  Sum_probs=100.7

Q ss_pred             cccCCCCCCCCcEEEcCCCCHHHHHHHHHH-----cCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713           46 VLSFPNVPGGRVIEIMADTTIPDAVKILSE-----CNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA  120 (351)
Q Consensus        46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~-----~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~  120 (351)
                      +..+|+   ..++++.+++|+.+|+..+.+     ..+..+.|+|.+.        +++|+++..+++.           
T Consensus       134 aG~~Mt---~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~--------~L~Gvvsl~~Ll~-----------  191 (451)
T COG2239         134 AGRIMT---TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKG--------KLLGVVSLRDLLT-----------  191 (451)
T ss_pred             hhccce---eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCcc--------ceEEEeeHHHHhc-----------
Confidence            445554   799999999999999999984     4578889999864        7999999988881           


Q ss_pred             hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713          121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF  200 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~  200 (351)
                                                                                                    ..
T Consensus       192 ------------------------------------------------------------------------------a~  193 (451)
T COG2239         192 ------------------------------------------------------------------------------AE  193 (451)
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          13


Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                      +..+++++|.    +.+.++.+++...++.+.+.+++.-.+||+|++ ++++|+||..|++..+.+.
T Consensus       194 ~~~~i~~im~----~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi~eE  255 (451)
T COG2239         194 PDELLKDLME----DDVVSVLADDDQEEVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVIEEE  255 (451)
T ss_pred             cHhHHHHHhc----ccceeecccCCHHHHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHHHHH
Confidence            4578899999    559999999999999999999999999999994 8999999999999988654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.71  E-value=3.1e-07  Score=88.60  Aligned_cols=109  Identities=18%  Similarity=0.349  Sum_probs=91.7

Q ss_pred             cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceE
Q 018713          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (351)
Q Consensus       217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~  296 (351)
                      .....++.+..++++.|...+...+.|+|++ +++.|+++.+++..++...           ..+.+    .+. ....+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----------~~~~~----~~~-~~~~~  314 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-----------QGLQD----VLI-DDIYT  314 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-----------Cchhh----hhc-cCCce
Confidence            3456677889999999999999999999984 8999999999998776432           23444    343 66778


Q ss_pred             EcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          297 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       297 V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      +++++++.+++..|.+++.. +||+|+ +|+++|+||..+++..+.+.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       315 VDAGTLLRETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             ECCCCcHHHHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHHHhh
Confidence            99999999999999999988 999998 89999999999999988654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.55  E-value=1.8e-07  Score=88.41  Aligned_cols=109  Identities=23%  Similarity=0.261  Sum_probs=93.8

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE  293 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~  293 (351)
                      ++++++|+.++.++++....+++..+||.+++  +++++|+||.+|+ .++.+          ....+++    +|+ ..
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~~~----------~~~~~~~----vmt-~~  180 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFLED----------NSLLVSD----VMT-KN  180 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhhhc----------ccchhhh----hcc-cc
Confidence            37789999999999999999999999999753  4689999999998 44422          3456777    586 56


Q ss_pred             ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (351)
Q Consensus       294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l  341 (351)
                      .++.+...++.++-++|.+++...+||||+ +|+++.+|+++|+++.-
T Consensus       181 ~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  181 PVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKNR  227 (503)
T ss_pred             cccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhhc
Confidence            688999999999999999999999999999 99999999999998753

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=1.2e-06  Score=85.71  Aligned_cols=124  Identities=15%  Similarity=0.183  Sum_probs=96.6

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      .++.++|...+ ...+...++.+..+++..|...+.+.++|+|++ +++.|+|+..++.+.....           ..+.
T Consensus       274 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----------~~~~  340 (400)
T PRK10070        274 FSAKDIARRTP-NGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQQ-----------QGLD  340 (400)
T ss_pred             cchhhhhhcCc-ccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhcC-----------Cchh
Confidence            46677775220 111234467789999999999999999999984 8999999999997765322           1344


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCccc
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL  346 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~~  346 (351)
                      +    .+. ....++.+++++.+++..+.+.... +||||+ +|+++|+|+..+++..+.....
T Consensus       341 ~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~~~~~  397 (400)
T PRK10070        341 A----ALI-DAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALDREGV  397 (400)
T ss_pred             h----hhc-cCCceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHHhcCC
Confidence            4    233 5678999999999999999987766 999998 8999999999999999876543

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.44  E-value=5.6e-06  Score=79.97  Aligned_cols=107  Identities=17%  Similarity=0.243  Sum_probs=87.1

Q ss_pred             EEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccccc
Q 018713           58 IEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTV  137 (351)
Q Consensus        58 i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (351)
                      ....++.+..++++.|..++...+.|+|.+.        ++.|.++..++..+.-                         
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~-------------------------  299 (363)
T TIGR01186       253 ITKTADKGPRSALQLMRDERVDSLYVVDRQN--------KLVGVVDVESIKQARK-------------------------  299 (363)
T ss_pred             eeecCCCCHHHHHHHHHhcCCceEEEEcCCC--------CEEEEEeHHHHHHHhh-------------------------
Confidence            4567788999999999999999999998764        8999999877663310                         


Q ss_pred             cccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCc
Q 018713          138 GALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPF  217 (351)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~  217 (351)
                                                                                     ....+.+.+.    ...
T Consensus       300 ---------------------------------------------------------------~~~~~~~~~~----~~~  312 (363)
T TIGR01186       300 ---------------------------------------------------------------KAQGLQDVLI----DDI  312 (363)
T ss_pred             ---------------------------------------------------------------cCCchhhhhc----cCC
Confidence                                                                           0123455565    347


Q ss_pred             EEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       218 ~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      .++.+++++.+++..|.+++.. +||+|++ |+++|+||+.++++.+..
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       313 YTVDAGTLLRETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             ceECCCCcHHHHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHHh
Confidence            7899999999999999999988 9999984 899999999999998854

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.30  E-value=1.6e-06  Score=86.12  Aligned_cols=133  Identities=17%  Similarity=0.285  Sum_probs=104.1

Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCC----CCEEEEEeHHHHHHHhhcCCCC-------
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT----PDIKNYITQSAVVQGLEGCKGR-------  270 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~----g~liGiIt~~dil~~l~~~~~~-------  270 (351)
                      +.+++|+|.    +|+++++.-..+..+.+.+.+.+++.+||+|+..    +++.|+|-++.++..+....-.       
T Consensus       581 ~L~a~ev~~----~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~  656 (762)
T KOG0474|consen  581 NLTAGEVMS----KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTF  656 (762)
T ss_pred             hhhHhhhcc----CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcccc
Confidence            457899999    6799999999999999999999999999998631    4789999999998776432100       


Q ss_pred             ch-------hhhh--ccCccccccc------------CccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEE
Q 018713          271 DW-------FDII--ASQPISDLGL------------PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIV  329 (351)
Q Consensus       271 ~~-------l~~l--~~~~v~~L~~------------~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~li  329 (351)
                      ++       ++++  ...+++|+.+            |+|+ ..+++|.+++++..++.+|..-+.+++.||.. ..+.+
T Consensus       657 ~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n-~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-~~~~~  734 (762)
T KOG0474|consen  657 DLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMN-PSPYTVPETMSLAKAFILFRQLGLRHLLVVPK-TNRVV  734 (762)
T ss_pred             CcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccC-CCCcccCcccchHHHHHHHHHhcceeEEEecC-CCcee
Confidence            00       0111  1223333321            2676 88899999999999999999999999999998 88889


Q ss_pred             EEEeHHHHHHH
Q 018713          330 GNVSIRDIRHL  340 (351)
Q Consensus       330 GiIt~~DIl~~  340 (351)
                      |++|++|++..
T Consensus       735 gilTR~D~~~~  745 (762)
T KOG0474|consen  735 GILTRKDLARY  745 (762)
T ss_pred             EEEehhhhhhH
Confidence            99999999854

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.28  E-value=1.2e-05  Score=78.74  Aligned_cols=107  Identities=12%  Similarity=0.172  Sum_probs=86.1

Q ss_pred             EEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccccccc
Q 018713           59 EIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVG  138 (351)
Q Consensus        59 ~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (351)
                      ...++.+..+|+..|..++..++.|+|+++        +++|+++..++..+.-                          
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~--------------------------  334 (400)
T PRK10070        289 RKTPGFGPRSALKLLQDEDREYGYVIERGN--------KFVGAVSIDSLKTALT--------------------------  334 (400)
T ss_pred             ccCCCCCHHHHHHHHHhcCCceEEEEcCCC--------cEEEEEeHHHHHhhhh--------------------------
Confidence            355777899999999999999999999864        8999999888763210                          


Q ss_pred             ccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCcE
Q 018713          139 ALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFL  218 (351)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~~  218 (351)
                                                                                    ....+.+.+.    ....
T Consensus       335 --------------------------------------------------------------~~~~~~~~~~----~~~~  348 (400)
T PRK10070        335 --------------------------------------------------------------QQQGLDAALI----DAPL  348 (400)
T ss_pred             --------------------------------------------------------------cCCchhhhhc----cCCc
Confidence                                                                          0123455555    3477


Q ss_pred             EecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          219 PVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       219 ~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                      ++.+++++.+++..+.+.... +||+|++ |+++|+|+..++++.+...
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        349 AVDAQTPLSELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             eeCCCCCHHHHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHHhc
Confidence            899999999999999987666 9999984 8999999999999998543

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.23  E-value=5e-06  Score=82.64  Aligned_cols=186  Identities=13%  Similarity=0.121  Sum_probs=115.8

Q ss_pred             HHhhhccCCCChHHHHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeE
Q 018713           22 AIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGI  101 (351)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGi  101 (351)
                      .+..-+..|.-..+. ...+.++.+.++|+   .+++++...+.+....+++...+...+||+|+..+..   ..++.|+
T Consensus       561 ~~i~LkgvP~Le~~p-e~~mr~L~a~ev~~---~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~---~~~l~Gl  633 (762)
T KOG0474|consen  561 IIIQLKGVPFLEWEP-EPYMRNLTAGEVMS---KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNE---AGRLHGL  633 (762)
T ss_pred             HhhhccCCccccCCC-chHhhhhhHhhhcc---CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCcc---chhhhHH
Confidence            333344555433333 34567888999997   6999999999999999999999999999999754311   1368888


Q ss_pred             eeHHHHHHHHHHhhHHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCch
Q 018713          102 VDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPT  181 (351)
Q Consensus       102 v~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (351)
                      +-.+.++.-+...--..+.+...+...        ...-..-.+..+.|                               
T Consensus       634 ILRshl~vlL~~~~f~~~~~~~~~~~~--------~~~~~~~d~a~r~~-------------------------------  674 (762)
T KOG0474|consen  634 ILRSHLLVLLKKRVFVEESRSTFDLPV--------RRKFTFRDFAKREP-------------------------------  674 (762)
T ss_pred             HHHHHHHHHHHhhhhhccCccccCcch--------hhcCCHHHhhhcCC-------------------------------
Confidence            877777744433221111000000000        00000000000000                               


Q ss_pred             hhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH
Q 018713          182 AADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV  261 (351)
Q Consensus       182 ~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil  261 (351)
                          ..+|+.  +.+.+..-......+|++.    +.++.+++++..+..++..-+.+++.|++.. ++.+|++|++|++
T Consensus       675 ----~i~dv~--lt~~e~~~yvDl~p~~n~s----PytV~~~mSl~k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~  743 (762)
T KOG0474|consen  675 ----SIEDVH--LTSEEMEMYVDLHPFMNPS----PYTVPETMSLAKAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLA  743 (762)
T ss_pred             ----chhhhh--cchHhHhhccccccccCCC----CcccCcccchHHHHHHHHHhcceeEEEecCC-CceeEEEehhhhh
Confidence                001110  0111112234567788855    8999999999999999999999999999884 6789999999997


Q ss_pred             HHh
Q 018713          262 QGL  264 (351)
Q Consensus       262 ~~l  264 (351)
                      ++-
T Consensus       744 ~~~  746 (762)
T KOG0474|consen  744 RYR  746 (762)
T ss_pred             hHH
Confidence            654

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.21  E-value=3.7e-06  Score=79.76  Aligned_cols=113  Identities=13%  Similarity=0.185  Sum_probs=94.8

Q ss_pred             CCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccc
Q 018713           54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG  133 (351)
Q Consensus        54 ~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (351)
                      .++++.++|+.++.++++....++...+||......     ..+++|+|+..||-+.                       
T Consensus       115 ~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~-----~~KLvG~vtsrdi~f~-----------------------  166 (503)
T KOG2550|consen  115 INNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKR-----GSKLVGIITSRDIQFL-----------------------  166 (503)
T ss_pred             ccCCcccCCcccchhhhhhcccccccccccccCCcc-----cceeEEEEehhhhhhh-----------------------
Confidence            467789999999999999999999999999964321     3589999998775521                       


Q ss_pred             cccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccC
Q 018713          134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR  213 (351)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~  213 (351)
                                                                                       ......+.++|++. 
T Consensus       167 -----------------------------------------------------------------~~~~~~~~~vmt~~-  180 (503)
T KOG2550|consen  167 -----------------------------------------------------------------EDNSLLVSDVMTKN-  180 (503)
T ss_pred             -----------------------------------------------------------------hcccchhhhhcccc-
Confidence                                                                             12346789999954 


Q ss_pred             CCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713          214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL  264 (351)
Q Consensus       214 ~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l  264 (351)
                         .++.+.+.++.++-+++.+++...+||+|+ +|+++.+|+++|+.+..
T Consensus       181 ---~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  181 ---PVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKNR  227 (503)
T ss_pred             ---cccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhhc
Confidence               688889999999999999999999999998 48999999999997764

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.91  E-value=0.00011  Score=73.45  Aligned_cols=135  Identities=10%  Similarity=0.175  Sum_probs=93.6

Q ss_pred             hHhhhhccCCC-CcEEecCC-CCHHHHHHHHHhCCCCEEEEE-cCCCCCEEEEEeHHHHHHHhhcCCCCchhh---h-hc
Q 018713          205 VRSIIKSYRWA-PFLPVATD-DSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGCKGRDWFD---I-IA  277 (351)
Q Consensus       205 V~dim~~~~~~-~~~~v~~~-~sl~ea~~~m~~~~~~~vpVv-d~~~g~liGiIt~~dil~~l~~~~~~~~l~---~-l~  277 (351)
                      -.++|.+.+.+ +..++..+ +++.+...+|....++.+||+ ++++.+++|++.++|+...+.+......+.   + ..
T Consensus       545 ~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f  624 (696)
T KOG0475|consen  545 AIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYF  624 (696)
T ss_pred             hhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccccc
Confidence            34555543222 35556554 799999999999988888887 555678999999999987765322111100   0 01


Q ss_pred             cCccc--------ccccC-ccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713          278 SQPIS--------DLGLP-FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (351)
Q Consensus       278 ~~~v~--------~L~~~-~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~  342 (351)
                      ..+..        .+++. +|. ..+.++...++...+++++++-+++.+.|..  +|++.|+||++|++...+
T Consensus       625 ~~~~~~~~~~~~~~~~lk~il~-~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~r  695 (696)
T KOG0475|consen  625 NDPSPSAVAGIPSRLDLKDILD-MTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHTR  695 (696)
T ss_pred             CCCCccccCCCCCCcCceeecc-CCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhhc
Confidence            11111        11111 565 6788999999999999999999998877665  599999999999998754

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.91  E-value=3.1e-05  Score=61.94  Aligned_cols=55  Identities=18%  Similarity=0.334  Sum_probs=49.6

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++.++|.    .++.++.+++++.++++.|.+++.+.+||+|++ |+++|+|+..|+.+
T Consensus        58 ~~v~dim~----~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVIN----RKPVTARPNDPLREALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcC----CCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence            57999998    558899999999999999999999999999984 79999999999853

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.83  E-value=6.8e-05  Score=48.83  Aligned_cols=47  Identities=32%  Similarity=0.579  Sum_probs=42.7

Q ss_pred             ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (351)
Q Consensus       294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l  341 (351)
                      +.++.+++++.++++.|.+++.+.+||+++ +++++|+++..++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence            467899999999999999999999999998 78999999999998765

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.81  E-value=4.3e-05  Score=61.08  Aligned_cols=55  Identities=24%  Similarity=0.458  Sum_probs=48.7

Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      .++.+    +|. +++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+|+..||..
T Consensus        58 ~~v~d----im~-~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRD----VIN-RKPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHH----hcC-CCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhhc
Confidence            45677    475 78889999999999999999999999999998 899999999999863

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.75  E-value=0.0001  Score=47.98  Aligned_cols=47  Identities=19%  Similarity=0.445  Sum_probs=42.3

Q ss_pred             cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL  264 (351)
Q Consensus       217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l  264 (351)
                      +.++.+++++.++++.|.+++.+.+||++++ ++++|+++..++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHhh
Confidence            5678999999999999999999999999984 7999999999997764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.53  E-value=0.00023  Score=66.30  Aligned_cols=131  Identities=16%  Similarity=0.244  Sum_probs=99.4

Q ss_pred             hhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHH
Q 018713          181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAV  260 (351)
Q Consensus       181 ~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~di  260 (351)
                      .|++++.++|.+.+..   ..-.+..++|...  .+...-.+...-..++..+.....+.+.+++. .++.+|+++..+.
T Consensus       255 ~PAndYV~~Fv~~v~~---~~VltA~~IM~~~--~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~  328 (386)
T COG4175         255 NPANDYVRDFVRNVDR---SRVLTAKDIMRRP--DLLIRKTPGDGPRVALKLLRDEGREYGYAVDR-GNKFVGVVSIDSL  328 (386)
T ss_pred             CccHHHHHHHHhcCCh---hheeeHHHhhccc--ccccccccccccchhhhhhhhccchhhHHHhc-cCceeeEEeccch
Confidence            4667778888776543   4446789999842  33333344445567888888888888888886 4789999998887


Q ss_pred             HHHhhcCCCCchhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 018713          261 VQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  340 (351)
Q Consensus       261 l~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~  340 (351)
                      ....                        +. .++..+..++++.+.+....+..+. +||+|+ +++++|+|+...++.+
T Consensus       329 ~~~~------------------------~~-~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde-~~r~vG~i~~~~vl~a  381 (386)
T COG4175         329 VKAA------------------------LI-DDVLTVDADTPLSEILARIRQAPCP-VAVVDE-DGRYVGIISRGELLEA  381 (386)
T ss_pred             hccc------------------------cc-ccccccCccchHHHHHHHHhcCCCc-eeEEcC-CCcEEEEecHHHHHHH
Confidence            5441                        22 5777899999999999998887775 899999 9999999999999999


Q ss_pred             hcCc
Q 018713          341 LLKP  344 (351)
Q Consensus       341 l~~~  344 (351)
                      +...
T Consensus       382 L~~~  385 (386)
T COG4175         382 LARI  385 (386)
T ss_pred             HhcC
Confidence            8653

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.41  E-value=0.0013  Score=65.90  Aligned_cols=137  Identities=18%  Similarity=0.268  Sum_probs=94.9

Q ss_pred             CcEEEcCC-CCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           56 RVIEIMAD-TTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        56 ~~i~v~~~-~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      .++.+..+ +|+.|...+|.+.+...+||+-+++      ..+++|+|+..++...+....+..+..  . +.+      
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~------sq~lvGfv~rr~l~~~i~~ar~~q~~~--~-~~~------  621 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSED------SQRLVGFVLRRNLFLAILNARKIQSFI--V-TTS------  621 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccc------cceeEEEEchHHHHHHHhhhccccccc--e-ecc------
Confidence            46666666 9999999999999999999996544      348999999999986655432221100  0 000      


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                +....|.                                     +   ... .........+++|...  
T Consensus       622 ----------~~f~~~~-------------------------------------~---~~~-~~~~~~~~lk~il~~t--  648 (696)
T KOG0475|consen  622 ----------IYFNDPS-------------------------------------P---SAV-AGIPSRLDLKDILDMT--  648 (696)
T ss_pred             ----------cccCCCC-------------------------------------c---ccc-CCCCCCcCceeeccCC--
Confidence                      0000000                                     0   000 0223345667888844  


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL  264 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l  264 (351)
                        +.++...++..-+++++.+-+++...|..+  |++.|+||.+|+++..
T Consensus       649 --p~tv~d~tp~~~v~~~F~~lg~~~~~v~~~--G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  649 --PFTVTDLTPMETVVDLFRKLGLRQILVTKN--GILLGIITKKDCLRHT  694 (696)
T ss_pred             --cccccccCcHHHHHHHHHhhCceEEEEccC--CeeEeeeehHHHHHhh
Confidence              889999999999999999999999988864  6999999999998765

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.91  E-value=0.0059  Score=59.47  Aligned_cols=111  Identities=19%  Similarity=0.165  Sum_probs=76.0

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      ..-.++.++|.+.    ......+.+  .+++.   ++...++|+|.      |+++..+.........         ..
T Consensus       271 ~~~l~a~~~m~~~----~~~~~~~~~--~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~---------~~  326 (382)
T TIGR03415       271 LNVLTARSLMRPL----TDLEHVDGG--WCVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAA---------EQ  326 (382)
T ss_pred             ccceeHHHHhccc----ccccccCcc--hhhhh---cccceeEeecc------ceecccchHhHhhccc---------cc
Confidence            3445788999622    222233322  44433   67888999874      7888777655443211         12


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .+.++     . ....++++++++.+++..+.+.+.. ++|+|+  |+++|+|+..+++..+..
T Consensus       327 ~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       327 EVESL-----E-AAPTVINPDTLMRDVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             chhhh-----c-ccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHHhc
Confidence            33332     1 4677899999999999998887765 889986  999999999999998754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.32  E-value=0.11  Score=53.70  Aligned_cols=61  Identities=15%  Similarity=0.197  Sum_probs=51.6

Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CCCEEEEEeHHHHHHHhhc
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~-~g~liGiIt~~dil~~l~~  266 (351)
                      +..|+++|.    +++..+..+++..|..+.+....++.+|+||+. +.-++|.|.++.+...+..
T Consensus       587 ~v~VE~iMV----~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~  648 (931)
T KOG0476|consen  587 TVKVEHIMV----TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR  648 (931)
T ss_pred             EEEeeeecc----ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence            457899999    559999999999999999987779999999863 3458999999999877654

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.65  E-value=0.36  Score=50.01  Aligned_cols=63  Identities=19%  Similarity=0.116  Sum_probs=52.4

Q ss_pred             ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHH
Q 018713           42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLE  113 (351)
Q Consensus        42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~  113 (351)
                      ..+.|.++|.   +++..+..++|..|.-+.+....++++|++|+.+.      --++|.|....+...+-.
T Consensus       586 h~v~VE~iMV---~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~es------miLlGSV~R~~L~~ll~~  648 (931)
T KOG0476|consen  586 HTVKVEHIMV---TDVKYITKDTTYRELREALQTTTLRSFPLVESKES------MILLGSVARRYLTALLQR  648 (931)
T ss_pred             eEEEeeeecc---ccceeeeccCcHHHHHHHHHhCccceeccccCccc------ceeeehhHHHHHHHHHHh
Confidence            4566788886   89999999999999999998888999999987652      259999998888866554

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=93.82  E-value=0.099  Score=52.71  Aligned_cols=138  Identities=9%  Similarity=0.098  Sum_probs=92.4

Q ss_pred             HHHHHhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHH-HHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          189 DFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSML-SVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       189 d~~~~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~-ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                      +....+.....+....++++|++-  ..+..+..+..+. +......+++++++||.+.+....+|.+=....++++...
T Consensus       190 ~e~~ii~g~l~l~ek~~~evmtpi--~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~  267 (498)
T KOG2118|consen  190 DELTIITGALELTEKLVGEVMTPI--EDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE  267 (498)
T ss_pred             hhhhHhhhhHHHHHHHHHHhccch--hhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc
Confidence            333333333345567889999976  7788888888877 5555666889999999987544445553334444444221


Q ss_pred             CCCchhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713          268 KGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (351)
Q Consensus       268 ~~~~~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~  342 (351)
                      .      .+...++.+    .+. .++..++.++++.+.++.|++.+.|.+.|..  ...-+++++..|+ ....
T Consensus       268 ~------~~~~~~v~~----~~~-~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~--~~~~~~~~~l~~~-~~~~  328 (498)
T KOG2118|consen  268 V------PLEPLPVSE----SAL-LRLPLVPENMPLLDLLNEFQKGKSHMAVVRN--GHVDIFVLTLEDL-EEVV  328 (498)
T ss_pred             c------ccccccchh----hhc-cccccCCCcccHHHHHHHHhhhhceeEEEec--CCcceeeEeccch-hhhc
Confidence            1      123445555    343 7888999999999999999887777554444  4778999999997 4433

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.68  E-value=0.28  Score=46.19  Aligned_cols=49  Identities=14%  Similarity=0.273  Sum_probs=40.7

Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      .++.++.+++++.+.+....+... .++|+|+ +++++|+++...++.++.
T Consensus       335 ~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde-~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         335 DDVLTVDADTPLSEILARIRQAPC-PVAVVDE-DGRYVGIISRGELLEALA  383 (386)
T ss_pred             ccccccCccchHHHHHHHHhcCCC-ceeEEcC-CCcEEEEecHHHHHHHHh
Confidence            347788899999998888876554 5789988 489999999999998875

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=91.12  E-value=0.37  Score=44.09  Aligned_cols=88  Identities=16%  Similarity=0.085  Sum_probs=57.4

Q ss_pred             hhhhhhhhcccccchhhHHHHHhhhccCCCCh--HHHHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCce
Q 018713            2 AQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSL--QETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNIL   79 (351)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~   79 (351)
                      +.|++....|+    ..|.+.+..........  .............  .-      --.+.....-.+++..+...+..
T Consensus       218 ~~P~~il~~Pa----n~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~ls~~~~~~~~  285 (309)
T COG1125         218 DTPDEILANPA----NDFVEDFFGESERGLRLLSLVSVADAVRRGEP--AD------GEPLLEGFVDRDALSDFLARGRS  285 (309)
T ss_pred             CCHHHHHhCcc----HHHHHHHhccccccccccchhhHHHhhccccc--cc------CCccccchhhHHHHHHHHhcCCc
Confidence            57899999999    88888876654322211  1111122111111  00      01234445666799999999999


Q ss_pred             ecceecCCCCCCCccccceeeEeeHHHHHH
Q 018713           80 SAPVKIPDAPSSSDWKERYLGIVDYSAIIL  109 (351)
Q Consensus        80 ~~pVvd~~~~~~~~~~~~~vGiv~~~di~~  109 (351)
                      .+||+|+++        +++|.++..+++.
T Consensus       286 ~~~Vvd~~g--------~~~G~vt~~~l~~  307 (309)
T COG1125         286 VLPVVDEDG--------RPLGTVTRADLLD  307 (309)
T ss_pred             eeEEECCCC--------cEeeEEEHHHHhh
Confidence            999999875        8999999999884

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=90.61  E-value=0.73  Score=42.25  Aligned_cols=63  Identities=10%  Similarity=0.025  Sum_probs=43.1

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG  263 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~  263 (351)
                      .....+.+.+.......--.+.......+++..+...+...+||+|++ |+++|.||+.+++..
T Consensus       246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~~  308 (309)
T COG1125         246 LSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDED-GRPLGTVTRADLLDE  308 (309)
T ss_pred             cchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhhh
Confidence            345667777764310001123334455567888888899999999995 999999999998754

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=86.03  E-value=1.8  Score=42.32  Aligned_cols=47  Identities=17%  Similarity=0.122  Sum_probs=40.2

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      ...++++++++.+++..+...+.. ++|+|+  |+++|+|+..+++..+.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       334 APTVINPDTLMRDVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHHh
Confidence            477899999999999998876654 788874  69999999999998874

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=82.33  E-value=2.2  Score=43.17  Aligned_cols=130  Identities=13%  Similarity=0.093  Sum_probs=92.5

Q ss_pred             HHHhccCccccCCCCCCCCcEEEcCCCCHH-HHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhH
Q 018713           38 TAAFARIPVLSFPNVPGGRVIEIMADTTIP-DAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAE  116 (351)
Q Consensus        38 ~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~-~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~  116 (351)
                      ...+..+.+.++|. |...+..++.+..+. +......+++.+++||.+.+..       +.+|.+-....+        
T Consensus       198 ~l~l~ek~~~evmt-pi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~-------~~i~~~L~~~~~--------  261 (498)
T KOG2118|consen  198 ALELTEKLVGEVMT-PIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPK-------NKIGGLLVMNLL--------  261 (498)
T ss_pred             hHHHHHHHHHHhcc-chhhheeeccccccchHHHhhHhhcCcceeeeccCccc-------chhhHHHHhhhh--------
Confidence            45677788899997 778888899999997 6777778999999999987632       444432111111        


Q ss_pred             HHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhh
Q 018713          117 LAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQ  196 (351)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~  196 (351)
                                                                                                 ..+..
T Consensus       262 ---------------------------------------------------------------------------~~~~~  266 (498)
T KOG2118|consen  262 ---------------------------------------------------------------------------RLLQV  266 (498)
T ss_pred             ---------------------------------------------------------------------------hhhcc
Confidence                                                                                       01100


Q ss_pred             cCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       197 ~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      ...+...++.+.+.    .+...++.++++.+.++.+.+.+.|.+.|...  ..-+++++..++ ....
T Consensus       267 ~~~~~~~~v~~~~~----~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~--~~~~~~~~l~~~-~~~~  328 (498)
T KOG2118|consen  267 EVPLEPLPVSESAL----LRLPLVPENMPLLDLLNEFQKGKSHMAVVRNG--HVDIFVLTLEDL-EEVV  328 (498)
T ss_pred             ccccccccchhhhc----cccccCCCcccHHHHHHHHhhhhceeEEEecC--CcceeeEeccch-hhhc
Confidence            01345567777777    55888999999999999999888888777774  357899999987 5443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-25
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-15
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-09
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-09
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-21
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-11
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	7e-08
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	5e-18
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	5e-14
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-14
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-12
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-10
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	3e-09
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	7e-14
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-07
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-12
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	4e-12
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	4e-07
1pbj_A	125	Hypothetical protein; structural genomics, domain,	4e-12
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-09
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	4e-12
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	1e-10
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-11
3ddj_A	296	CBS domain-containing protein; structural genomics	3e-10
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	5e-11
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	3e-07
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	8e-11
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-08
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	1e-10
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	8e-09
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-10
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	2e-07
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	3e-10
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	3e-09
4fry_A	157	Putative signal-transduction protein with CBS DOM;	3e-10
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-08
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	3e-10
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	3e-09
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	4e-10
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-09
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	7e-10
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	5e-09
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	7e-10
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-09
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-08
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-09
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	7e-09
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-09
1pvm_A	184	Conserved hypothetical protein TA0289; structural	3e-08
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	4e-09
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	5e-07
1vr9_A	213	CBS domain protein/ACT domain protein; structural	7e-09
1vr9_A	213	CBS domain protein/ACT domain protein; structural	2e-08
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	7e-09
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	9e-09
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	4e-08
3fio_A	70	A cystathionine beta-synthase domain protein fused	1e-07
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	2e-07
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-07
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-06
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-05
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	4e-07
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	1e-05
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	7e-07
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	8e-06
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	3e-05
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	4e-05
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	4e-05
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	5e-05
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	5e-05
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	2e-04
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	2e-04
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	3e-04
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	5e-04
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	5e-04

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  104 bits (260), Expect = 1e-25
 Identities = 24/160 (15%), Positives = 69/160 (43%), Gaps = 3/160 (1%)

Query: 185 RLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII 244
           R ++     I + E  K  T R +     + P + ++ + S+   +  L + ++  +P+I
Sbjct: 96  RYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVI 155

Query: 245 EPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELIL 304
           +P + +    +T   +++ L+            S+ + +L +   +   +  +++   + 
Sbjct: 156 DPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQI--GTYANIAMVRTTTPVY 213

Query: 305 EAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344
            A      + +  +PVV+ ++ ++V   S  D+ +L  + 
Sbjct: 214 VALGIFVQHRVSALPVVD-EKGRVVDIYSKFDVINLAAEK 252

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 75.0 bits (184), Expect = 2e-15
 Identities = 40/295 (13%), Positives = 99/295 (33%), Gaps = 17/295 (5%)

Query: 55  GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET 114
            +++       +  A   L    + +AP+           K+ ++G++  +  I  +   
Sbjct: 45  SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK-------KQSFVGMLTITDFINILHRY 97

Query: 115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLA-AEK 173
            + A                          L    P A     V++        L   + 
Sbjct: 98  YKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP 157

Query: 174 GAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSI--IKSYRWAPFLPVATDDSMLSVLL 231
            +G        +    F K+ + E P      +S+  ++   +A    V T   +   L 
Sbjct: 158 ESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALG 217

Query: 232 LLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS 291
           +  ++R+  +P+++     + +  ++  V+      K  +  D+  ++ +          
Sbjct: 218 IFVQHRVSALPVVDEKG-RVVDIYSKFDVINLAAE-KTYNNLDVSVTKALQHRSH--YFE 273

Query: 292 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPE 345
             V+    +E +     R+ +  +  + VV+ +   + G VS+ DI + L+L   
Sbjct: 274 G-VLKCYLHETLEAIINRLVEAEVHRLVVVD-EHDVVKGIVSLSDILQALVLTGG 326

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 10/54 (18%), Positives = 30/54 (55%)

Query: 290 SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 343
           +S +++   ++  + +AF  +  N +   P+ + +++  VG ++I D  ++L +
Sbjct: 43  TSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHR 96

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 56.1 bits (135), Expect = 5e-09
 Identities = 20/164 (12%), Positives = 47/164 (28%), Gaps = 8/164 (4%)

Query: 180 PTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLR 239
              +    E    V       KS     +I +      +   T   +      L    +R
Sbjct: 14  NEHSQETPESNSSVYTTF--MKSHRCYDLIPTSS--KLVVFDTSLQVKKAFFALVTNGVR 69

Query: 240 NVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--FDIIASQPISDLGLPFMSS--DEVI 295
             P+ +         +T +  +  L             +    I      ++      ++
Sbjct: 70  AAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLV 129

Query: 296 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339
            I  N  + +A   +  N I  +PV++ +    +  ++ + I  
Sbjct: 130 CISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILK 173

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 92.6 bits (230), Expect = 2e-21
 Identities = 31/166 (18%), Positives = 68/166 (40%), Gaps = 14/166 (8%)

Query: 187 HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVAT--DDSMLSVLLLLSKYRLRNVPII 244
              F + I + + F+   +R + +     P   +      S++   L +SK R R +P+I
Sbjct: 87  SSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLI 146

Query: 245 ----EPGTPDIKNYITQSAVVQGL-EGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQS 299
               E G+  I + +TQ  +++ +   CK           P++ + +   S   + T   
Sbjct: 147 DVDGETGSEMIVSVLTQYRILKFISMNCKETAMLR----VPLNQMTIGTWS--NLATASM 200

Query: 300 NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345
              + +  K + + NI  +P+V   +  ++      D+ HL+   +
Sbjct: 201 ETKVYDVIKMLAEKNISAVPIVN-SEGTLLNVYESVDVMHLIQDGD 245

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 49/337 (14%), Positives = 109/337 (32%), Gaps = 44/337 (13%)

Query: 32  SLQETLTAAFARI-----PVLSFPNVPG-GRVIEIMADTTIPDAVKILSECNILSAPVKI 85
            +QET   A   I        S+  +P   R+I       +  ++ +L+  NI+SAP+  
Sbjct: 3   DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPL-- 60

Query: 86  PDAPSSSDWKERYLGIVDYS---AIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGA 142
                      ++ G++  +    +I +  +++    A   +      G+          
Sbjct: 61  -----WDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAI 115

Query: 143 -LALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRL--HEDFYKVILQEEP 199
                   P         A   + A  +      G+        +       K I     
Sbjct: 116 PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK 175

Query: 200 FKSTTVRSIIKSYR--WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQ 257
             +     + +     W+     + +  +  V+ +L++  +  VPI+      + N    
Sbjct: 176 ETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEG-TLLNVYES 234

Query: 258 SAVVQGLEGCKGRDWFDIIASQPISDLGLP---FMSS-----DEVITIQSNELILEAFKR 309
                        D   +I     S+L L     +       D V T ++ + +   F  
Sbjct: 235 ------------VDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDA 282

Query: 310 MKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPE 345
           +K + +  + VV+ +  K+ G +S+ DI  +++    
Sbjct: 283 IKHSRVHRLFVVD-ENLKLEGILSLADILNYIIYDKT 318

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 52.6 bits (126), Expect = 7e-08
 Identities = 11/60 (18%), Positives = 25/60 (41%)

Query: 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 350
           S  +I       +  +   +  NNI   P+ + +  K  G +++ D  +++      S+F
Sbjct: 31  SFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSF 90

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 82.7 bits (204), Expect = 5e-18
 Identities = 17/161 (10%), Positives = 55/161 (34%), Gaps = 15/161 (9%)

Query: 190 FYKVILQEEPFKSTTVRSIIKSYRWA-----PFLPVATDDSMLSVLLLLSKYRLRNVPII 244
           ++    + E      +  +    R           +     +    L + + R   +P+I
Sbjct: 92  YFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLI 151

Query: 245 EP----GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 300
           +         + + +TQ  +++                 PI DL +  ++ D + + Q  
Sbjct: 152 DQDEETHREIVVSVLTQYRILKF---VALNCRETHFLKIPIGDLNI--ITQDNMKSCQMT 206

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341
             +++  + +    +  +P+++ +   ++      D+  L+
Sbjct: 207 TPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDVLGLI 246

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 71.1 bits (174), Expect = 5e-14
 Identities = 47/315 (14%), Positives = 101/315 (32%), Gaps = 40/315 (12%)

Query: 47  LSFPNVPG-GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYS 105
            S+  +P   R+I +     +  ++ +L + +I+SAP+             R+ G++  +
Sbjct: 31  TSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSK-------TSRFAGLLTTT 83

Query: 106 AIILWVL------ETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVA 159
             I  +       +  EL       G                ++        A   +  +
Sbjct: 84  DFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLES 143

Query: 160 AAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLP 219
            +G         E                 F  +  +E  F    +  +           
Sbjct: 144 RSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDL-NIITQDNMKS 202

Query: 220 VATDDSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278
                 ++ V+ +L++ R+ +VPII E G   + N                 D   +I  
Sbjct: 203 CQMTTPVIDVIQMLTQGRVSSVPIIDENGY--LINVYEA------------YDVLGLIKG 248

Query: 279 QPISDLGLP---FMS-----SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVG 330
              +DL L     +       + V T   N+ +      ++   +    VV+    ++VG
Sbjct: 249 GIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVG 307

Query: 331 NVSIRDI-RHLLLKP 344
            +++ DI +++LL  
Sbjct: 308 VLTLSDILKYILLGS 322

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 43/296 (14%), Positives = 92/296 (31%), Gaps = 47/296 (15%)

Query: 56  RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115
           +++ +   TTI  A+  ++E      PV             + +GI+    I+   +   
Sbjct: 13  KIVTVYPTTTIRKALMTMNENKYRRLPVVNAG-------NNKVVGIITSMDIV-DFMGGG 64

Query: 116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGA 175
                                V  +      M               A         K  
Sbjct: 65  SKYNLIREKHERNFLAAINEPVREI------MEENVITLKENADIDEAIE---TFLTKNV 115

Query: 176 GKDAP--TAADRL-----HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLS 228
           G  AP     ++L       D  +  L ++  ++  +   I        +     + +  
Sbjct: 116 GG-APIVNDENQLISLITERDVIRA-LLDKIDENEVIDDYITR----DVIVATPGERLKD 169

Query: 229 VLLLLSKYRLRNVPIIEPGTP-------DIKNYITQSAVVQGLEGCKGRDWFDIIASQPI 281
           V   + +   R +P++  G         D    +        ++    R+    I +  +
Sbjct: 170 VARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVRE----ITNVRM 225

Query: 282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
            +     M  D VIT +  + + +  + M  N+IG +PVV+    +I G ++ +D+
Sbjct: 226 EE----IMKRD-VITAKEGDKLKKIAEIMVTNDIGALPVVDE-NLRIKGIITEKDV 275

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL-EGCKGRDWFDIIAS 278
           V    ++   L+ +++ + R +P++  G   +   IT   +V  +  G K     +    
Sbjct: 17  VYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHER 76

Query: 279 QPISDLGLP---FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
             ++ +  P    M  + VIT++ N  I EA +     N+GG P+V  +  +++  ++ R
Sbjct: 77  NFLAAINEPVREIMEEN-VITLKENADIDEAIETFLTKNVGGAPIVNDEN-QLISLITER 134

Query: 336 DIRHLLLK 343
           D+   LL 
Sbjct: 135 DVIRALLD 142

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 19/150 (12%)

Query: 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261
           +  VR I++       + +  +  +   +       +   PI+      + + IT+  V+
Sbjct: 83  NEPVREIMEE----NVITLKENADIDEAIETFLTKNVGGAPIVNDEN-QLISLITERDVI 137

Query: 262 QGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVV 321
           + L      +         I D    +++ D VI     E + +  + M  N    +PVV
Sbjct: 138 RALLDKIDENE-------VIDD----YITRD-VIVATPGERLKDVARTMVRNGFRRLPVV 185

Query: 322 EGQQKKIVGNVSIRDIRHLLLKPELFSNFR 351
                ++VG ++  D   LL     F++ +
Sbjct: 186 SEG--RLVGIITSTDFIKLLGSDWAFNHMQ 213

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341
             +   ++T+     I +A   M +N    +PVV     K+VG ++  DI   +
Sbjct: 9   AQNKK-IVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFM 61

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 67.2 bits (165), Expect = 7e-14
 Identities = 9/64 (14%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
             PI DL +  ++ D + + Q    +++  + +    +  +P+++     ++      D+
Sbjct: 7   KIPIGDLNI--ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG-YLINVYEAYDV 63

Query: 338 RHLL 341
             L+
Sbjct: 64  LGLI 67

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 22/155 (14%)

Query: 196 QEEPFKSTTVRSI-IKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPII-EPGTP- 249
           +E  F    +  + I +        + +      ++ V+ +L++ R+ +VPII E G   
Sbjct: 1   RETHFLKIPIGDLNIITQD-----NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLI 55

Query: 250 DIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD-LGLPFMSSDEVITIQSNELILEAFK 308
           ++        V+  ++G    D      S  + + L       + V T   N+ +     
Sbjct: 56  NV---YEAYDVLGLIKGGIYNDL-----SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMD 107

Query: 309 RMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLL 342
            ++   +    VV+    ++VG +++ DI +++LL
Sbjct: 108 NIRKARVHRFFVVDD-VGRLVGVLTLSDILKYILL 141

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 17/152 (11%), Positives = 52/152 (34%), Gaps = 30/152 (19%)

Query: 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP-------DIKNYI 255
            TV+ +++         +  DDS+ + +  ++   +  + +++           D     
Sbjct: 6   KTVKHLLQEKGHTVVA-IGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSR-- 62

Query: 256 TQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNI 315
                         +   D      + +     M+   V  +  N    +    + +  +
Sbjct: 63  ---KSYL-----LDKPVKDT----QVKE----IMTRQ-VAYVDLNNTNEDCMALITEMRV 105

Query: 316 GGIPVVEGQQKKIVGNVSIRDI-RHLLLKPEL 346
             +PV++    K++G +SI D+ +  + + + 
Sbjct: 106 RHLPVLDD--GKVIGLLSIGDLVKDAISQHQF 135

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 61.8 bits (151), Expect = 4e-12
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 15/118 (12%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279
           +    S+  VL    +    +  +++ G       +T   V++ +   +G D    +A  
Sbjct: 14  IDITASLEDVLRNYVENAKGSSVVVKEGVR--VGIVTTWDVLEAIA--EGDD----LAEV 65

Query: 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
            + +     M  D ++TI     I EA ++M  N +  + V E    +I+G +S  DI
Sbjct: 66  KVWE----VMERD-LVTISPRATIKEAAEKMVKNVVWRLLVEEDD--EIIGVISATDI 116

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 348
           M +D V TI     + +  +   +N  G   VV+      VG V+  D+   + + +  +
Sbjct: 7   MVTD-VDTIDITASLEDVLRNYVENAKGSSVVVKEG--VRVGIVTTWDVLEAIAEGDDLA 63

Query: 349 N 349
            
Sbjct: 64  E 64

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 61.8 bits (151), Expect = 4e-12
 Identities = 30/147 (20%), Positives = 64/147 (43%), Gaps = 25/147 (17%)

Query: 201 KSTTVRSIIKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQ 257
           +   V+  +K+        V +   D  +  +  ++++  + +V +++   P     IT+
Sbjct: 2   EEEIVKEYMKT-------QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKP--VGIITE 52

Query: 258 SAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGG 317
             +V+ +   KG+            +    FM++  +ITI+ +  I  A   M+  NI  
Sbjct: 53  RDIVKAIG--KGKS-----LETKAEE----FMTAS-LITIREDSPITGALALMRQFNIRH 100

Query: 318 IPVVEGQQKKIVGNVSIRDIRHLLLKP 344
           +PVV+  +  + G +SIRDI   +   
Sbjct: 101 LPVVDD-KGNLKGIISIRDITRAIDDM 126

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
           +  + + +     M +  VI++  +  + +  K M + NIG + VV+G   K VG ++ R
Sbjct: 1   MEEEIVKEY----MKTQ-VISVTKDAKLNDIAKVMTEKNIGSVIVVDGN--KPVGIITER 53

Query: 336 DIRHLLLK 343
           DI   + K
Sbjct: 54  DIVKAIGK 61

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 38/299 (12%), Positives = 91/299 (30%), Gaps = 51/299 (17%)

Query: 57  VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIV---DYSAIILWVLE 113
              +  +  +  A K ++E  I    V            E+  G++   D  + +    +
Sbjct: 30  PPILSKEDRLGSAFKKINEGGIGRIIV----------ANEKIEGLLTTRDLLSTVESYCK 79

Query: 114 TAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEK 173
            +      + + T                    MT        T     A     +   +
Sbjct: 80  DSCSQGDLYHISTTPIIDY--------------MTPNPVTVYNTSDEFTAIN---IMVTR 122

Query: 174 GAGKDAP--TAADRL-----HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSM 226
             G   P     D+        +F  +   ++  +   V+  + +        +  +  +
Sbjct: 123 NFGS-LPVVDINDKPVGIVTEREFLLLY--KDLDEIFPVKVFMST----KVQTIYKEVRL 175

Query: 227 LSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGL 286
              + L+ +   R +P+I+     +   +T    ++ L     +   D    + + D+  
Sbjct: 176 DQAVKLMLRRGFRRLPVIDDDN-KVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDV-- 232

Query: 287 PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345
             M ++ ++TI     +  A   M    IG + ++      I G ++ RD+   L    
Sbjct: 233 --MVTN-LVTIDELASVNRAAAEMIVKRIGSLLILNKDN-TIRGIITERDLLIALHHIL 287

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 24/154 (15%), Positives = 56/154 (36%), Gaps = 17/154 (11%)

Query: 192 KVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDI 251
               +   F+   + +++          ++ +D + S    +++  +  + +       +
Sbjct: 9   HHHHENLYFQGMNIETLMIK----NPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGL 64

Query: 252 KNYITQS----AVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAF 307
              +T       V    +    +     I++ PI D    +M+ +  +T+ +      A 
Sbjct: 65  ---LTTRDLLSTVESYCKDSCSQGDLYHISTTPIID----YMTPN-PVTVYNTSDEFTAI 116

Query: 308 KRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341
             M   N G +PVV+    K VG V+ R+   L 
Sbjct: 117 NIMVTRNFGSLPVVD-INDKPVGIVTEREFLLLY 149

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 58.8 bits (143), Expect = 5e-11
 Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS 333
           D + +  + D     M+ + VIT + +E ++EAF++M    I  +PV++  + K++G V+
Sbjct: 3   DTLKNIKVKD----VMTKN-VITAKRHEGVVEAFEKMLKYKISSLPVIDD-ENKVIGIVT 56

Query: 334 IRDIRHLLLKPE 345
             DI + L++ +
Sbjct: 57  TTDIGYNLIRDK 68

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 36/159 (22%)

Query: 198 EPFKSTTVRSIIKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNY 254
           +  K+  V+ ++          V T    + ++     + KY++ ++P+I     D +N 
Sbjct: 3   DTLKNIKVKDVMTK-------NVITAKRHEGVVEAFEKMLKYKISSLPVI-----DDENK 50

Query: 255 ----ITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRM 310
               +T + +                    I D     M+ D VITI  +  ILEA K+M
Sbjct: 51  VIGIVTTTDIG------YNLIRDKYTLETTIGD----VMTKD-VITIHEDASILEAIKKM 99

Query: 311 -----KDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 344
                K+  I  +PVV+ +  K+VG +S  DI   + K 
Sbjct: 100 DISGKKEEIINQLPVVD-KNNKLVGIISDGDIIRTISKI 137

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 58.8 bits (143), Expect = 8e-11
 Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 26/172 (15%)

Query: 182 AADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNV 241
            +D++H   +         K   V  +I          V  D  +  ++  + +  +   
Sbjct: 2   GSDKIHHHHH-------HMKVKDVCKLISL----KPTVVEEDTPIEEIVDRILEDPVTRT 50

Query: 242 PII-EPGTP-------DIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE 293
             +              +             +    R     + ++  S++    M    
Sbjct: 51  VYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEI----MLD-- 104

Query: 294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345
            + +  +  + EA K M DNNI  +PVV+ +  +IVG+++  +I   L K  
Sbjct: 105 PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG-EIVGDLNSLEILLALWKGR 155

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 346
            +S      ++ +  I E   R+ ++ +     V     K+VG + +  +  +      
Sbjct: 21  LISLK-PTVVEEDTPIEEIVDRILEDPVTRTVYVAR-DNKLVGMIPVMHLLKVSGFHFF 77

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 57.5 bits (140), Expect = 1e-10
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 24/147 (16%)

Query: 198 EPFKSTTVRSIIKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNY 254
           +PF  TT R I+ +        V      +++ +    + ++ +  +PI       +   
Sbjct: 3   DPFTMTTARDIMNA-------GVTCVGEHETLTAAAQYMREHDIGALPICGDDD-RLHGM 54

Query: 255 ITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNN 314
           +T   +V       G D     A +              +  + +N  I E    M+++ 
Sbjct: 55  LTDRDIVIKGLA-AGLDPNTATAGE--------LARDS-IYYVDANASIQEMLNVMEEHQ 104

Query: 315 IGGIPVVEGQQKKIVGNVSIRDI-RHL 340
           +  +PV+     ++VG V+  DI RHL
Sbjct: 105 VRRVPVISE--HRLVGIVTEADIARHL 129

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 52.5 bits (127), Expect = 8e-09
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 269 GRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKI 328
           G D F +       D+    M++  V  +  +E +  A + M++++IG +P+      ++
Sbjct: 1   GIDPFTMT---TARDI----MNAG-VTCVGEHETLTAAAQYMREHDIGALPICG-DDDRL 51

Query: 329 VGNVSIRDIRH 339
            G ++ RDI  
Sbjct: 52  HGMLTDRDIVI 62

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
            +S    IT  SN  I+EA K +  +NI  +P+V+    K+VG ++  DI 
Sbjct: 6   ILSKP-PITAHSNISIMEAAKILIKHNINHLPIVDE-HGKLVGIITSWDIA 54

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 43/150 (28%)

Query: 203 TTVRSIIKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPII-EPGTP-------DI 251
           T V+ I+         P  T   + S++    +L K+ + ++PI+ E G         DI
Sbjct: 1   TLVKDILSK-------PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDI 53

Query: 252 KNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMK 311
              + Q+                    + I ++    M+ + VIT   +E +     +M 
Sbjct: 54  AKALAQN-------------------KKTIEEI----MTRN-VITAHEDEPVDHVAIKMS 89

Query: 312 DNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 341
             NI G+PVV+   +++VG V+  DI  L 
Sbjct: 90  KYNISGVPVVDD-YRRVVGIVTSEDISRLF 118

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339
            M+     T+     + +A   M+  +I  +P+V+   KK++G VS RD+  
Sbjct: 10  MMTRH-PHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLA 59

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNY----ITQSAVVQGLEGCKGR--DWF 273
           +    ++     L+    +R+VPI+     D        ++Q  ++   E    R     
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIV-----DANKKLLGIVSQRDLLAAQESSLQRSAQGD 72

Query: 274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS 333
            +    P+ ++    M +D V ++     + E+   M+ + IG +PVV      +VG ++
Sbjct: 73  SLAFETPLFEV----MHTD-VTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIIT 125

Query: 334 IRDIRHLLLKP 344
             D   + +  
Sbjct: 126 DSDFVTIAINL 136

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 25/154 (16%), Positives = 61/154 (39%), Gaps = 31/154 (20%)

Query: 202 STTVRSI--IKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP-------DIK 252
           STTV  I   K         V  +D +   + L+++  +  + +++           D  
Sbjct: 6   STTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYA 65

Query: 253 NYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD 312
                  VV      + R       +  + ++    M++  V  ++ ++   E    M +
Sbjct: 66  R-----KVVL-----QERSS----KATRVEEI----MTAK-VRYVEPSQSTDECMALMTE 106

Query: 313 NNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPE 345
           + +  +PV++G   K++G +SI D+ + ++   +
Sbjct: 107 HRMRHLPVLDG--GKLIGLISIGDLVKSVIADQQ 138

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 290 SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 346
           S   + T+  N+ + +A K M +  IG + VV+G    I G V+ RD    ++  E 
Sbjct: 19  SGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD--DIAGIVTERDYARKVVLQER 73

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 35/153 (22%)

Query: 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII-EPGTP-------DIKN 253
              ++  +        L V    S+     L+ ++ + ++ +I + G         DI  
Sbjct: 6   KAPIKVYMTK----KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIR 61

Query: 254 YITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN 313
            +             G  +       P+       M+ + +IT   N  + E  ++M ++
Sbjct: 62  RVIV----------PGLPY-----DIPVER----IMTRN-LITANVNTPLGEVLRKMAEH 101

Query: 314 NIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPE 345
            I  I + E    KIVG  ++ D+      + E
Sbjct: 102 RIKHILIEEE--GKIVGIFTLSDLLEASRRRLE 132

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
             PI       M+   ++ ++ +  + EA + M + ++G + V+      +VG  +  DI
Sbjct: 6   KAPIKVY----MTKK-LLGVKPSTSVQEASRLMMEFDVGSLVVINDDG-NVVGFFTKSDI 59

Query: 338 RHLLLKPEL 346
              ++ P L
Sbjct: 60  IRRVIVPGL 68

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 23/151 (15%), Positives = 57/151 (37%), Gaps = 28/151 (18%)

Query: 195 LQEEPFKSTTVRSIIKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPIIEP----- 246
           + ++ F+   V+ ++          VA     + +   LL+L K     +P+++P     
Sbjct: 7   IPKDEFQQIFVKDLMI-----SSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLH 61

Query: 247 GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEA 306
           G       I+ + ++ G+ G +  ++ + +    +       M  D +  ++  +   +A
Sbjct: 62  GL------ISTAMILDGILGLERIEF-ERLEEMKVEQ----VMKQD-IPVLKLEDSFAKA 109

Query: 307 FKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
            +   D+    I  V        G ++ R I
Sbjct: 110 LEMTIDHPF--ICAVNEDG-YFEGILTRRAI 137

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 288 FM-SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 346
            M SS++V  +Q    +  A   +  +    IPV++    K+ G +S   I   +L  E 
Sbjct: 20  LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLD-PMYKLHGLISTAMILDGILGLER 78

Query: 347 FS 348
             
Sbjct: 79  IE 80

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 17/154 (11%), Positives = 59/154 (38%), Gaps = 23/154 (14%)

Query: 195 LQEEPFKSTTVRSIIKSYRWAPFLPV--ATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIK 252
           L  +  K   V+            PV    + S+   +  +    +  + +++     + 
Sbjct: 9   LLADKLKKLQVKDFQSI-------PVVIHENVSVYDAICTMFLEDVGTLFVVDRDA-VLV 60

Query: 253 NYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMK 311
             +++  +++   G +       + S P+       M+    +   +  + +++  K + 
Sbjct: 61  GVLSRKDLLRASIGQQE------LTSVPVHI----IMTRMPNITVCRREDYVMDIAKHLI 110

Query: 312 DNNIGGIPVVE--GQQKKIVGNVSIRDIRHLLLK 343
           +  I  +PV++   +  +++G V+  ++  +L+ 
Sbjct: 111 EKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS 144

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 269 GRDWFDIIASQP----ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ 324
           G+    ++A +     + D      S    + I  N  + +A   M   ++G + VV+ +
Sbjct: 3   GKTGTQLLADKLKKLQVKDF----QSIP--VVIHENVSVYDAICTMFLEDVGTLFVVD-R 55

Query: 325 QKKIVGNVSIRDIRHLLLKPELFSN 349
              +VG +S +D+    +  +  ++
Sbjct: 56  DAVLVGVLSRKDLLRASIGQQELTS 80

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 30/156 (19%)

Query: 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTP-------DIKN 253
           +T V+ ++          V  D S+      L  +++  V + +  G         D+  
Sbjct: 23  ATFVKDLLDRKGRDVVT-VGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK 81

Query: 254 YITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN 313
                AV       +G         Q +S      M+ + V+  Q N    +  + M   
Sbjct: 82  -----AVAG-----QGAASLQ----QSVSV----AMTKN-VVRCQHNSTTDQLMEIMTGG 122

Query: 314 NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN 349
               +PV E    ++ G +SI D+    +       
Sbjct: 123 RFRHVPVEEN--GRLAGIISIGDVVKARIGEIEAEA 156

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 15/123 (12%), Positives = 52/123 (42%), Gaps = 20/123 (16%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEP-----GTPDIKNYITQSAVVQGLEGCKGRDWFD 274
           V   + +   LL+L+K     +P+++      G       I+ + ++  + G +  + F+
Sbjct: 26  VQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGL------ISMTMMMDAILGLERIE-FE 78

Query: 275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSI 334
            + +  + +     M+ + +  ++ ++ +++A   + ++    + V         G  + 
Sbjct: 79  RLETMKVEE----VMNRN-IPRLRLDDSLMKAVGLIVNHPF--VCVENDDG-YFAGIFTR 130

Query: 335 RDI 337
           R++
Sbjct: 131 REV 133

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 273 FDIIASQPISDLGLPFM-SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGN 331
            +      +      F+  +D+V  +Q    +  A   +       IPV++    K+ G 
Sbjct: 5   HNEFMQMTVKP----FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLD-TSYKLHGL 59

Query: 332 VSIRDIRHLLLKPELFS 348
           +S+  +   +L  E   
Sbjct: 60  ISMTMMMDAILGLERIE 76

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 24/150 (16%), Positives = 58/150 (38%), Gaps = 28/150 (18%)

Query: 196 QEEPFKSTTVRSIIKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPIIEP-----G 247
           Q +     TV   +          VA     +++   LL+L+K     +P+++P     G
Sbjct: 7   QSDQLLEATVGQFMI-----EADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHG 61

Query: 248 TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAF 307
                  I  + ++  + G +  ++ + +    + +     M +D +  +  N+ I++ F
Sbjct: 62  L------IGTNMIMNSIFGLERIEF-EKLDQITVEE----VMLTD-IPRLHINDPIMKGF 109

Query: 308 KRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
             + +N    + V   +Q    G  + R +
Sbjct: 110 GMVINNGF--VCVENDEQ-VFEGIFTRRVV 136

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 288 FM-SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 346
           FM  +D+V  +Q    +  A   +       IPV++    ++ G +    I + +   E 
Sbjct: 19  FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD-PSYRLHGLIGTNMIMNSIFGLER 77

Query: 347 FS 348
             
Sbjct: 78  IE 79

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342
            M+S+   T+  N  + +A K M +N++ G+ V +      VG +S R I    +
Sbjct: 14  IMNSN-FKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFI 66

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 14/128 (10%), Positives = 53/128 (41%), Gaps = 12/128 (9%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279
           V  + ++   + ++++  L  + + +    +    +++ ++++     + +         
Sbjct: 22  VNWNTTVFDAVKIMNENHLYGLVVKD-DNGNDVGLLSERSIIKRFIP-RNKK----PDEV 75

Query: 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 339
           PI  +    M    +  ++S+  + +    + +N +    VV+    ++VG V++ D+  
Sbjct: 76  PIRLV----MRKP-IPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSR 129

Query: 340 LLLKPELF 347
            L +  + 
Sbjct: 130 YLSRASIT 137

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 18/146 (12%), Positives = 50/146 (34%), Gaps = 26/146 (17%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIE--------------------PGTPDIKNYITQSA 259
           V    S+   L LL + ++  +P+I+                     G       +    
Sbjct: 19  VKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDV 78

Query: 260 VVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIP 319
                   + +        + + DL    M+    + ++ +  + +A + + +     +P
Sbjct: 79  DSTWKTFNELQKLISKTYGKVVGDL----MTPS-PLVVRDSTNLEDAARLLLETKFRRLP 133

Query: 320 VVEGQQKKIVGNVSIRDIRHLLLKPE 345
           VV+    K++G ++  ++    L+ +
Sbjct: 134 VVDADG-KLIGILTRGNVVRAALQIK 158

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 288 FMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 345
           FM+    +  ++ +  + +A + + +  + G+PV++     +VG VS  D+  L     
Sbjct: 9   FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD-NWTLVGVVSDYDLLALDSISG 66

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 54.4 bits (131), Expect = 7e-09
 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
           +++ D    ++ +  + E   RM+        V +  +    G V+  D+ 
Sbjct: 18  WVTQD-FPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLL 66

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 19/129 (14%)

Query: 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI 275
            F  V    ++   L  + +Y+     + +           +    +G+      D  D+
Sbjct: 22  DFPMVEESATVRECLHRMRQYQTNECIVKD-----------REGHFRGV--VNKEDLLDL 68

Query: 276 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 335
                + +     +S      +   + I  A     ++    +PVV  ++ ++ G VS+ 
Sbjct: 69  DLDSSVFNK----VSL-PDFFVHEEDNITHALLLFLEHQEPYLPVV-DEEMRLKGAVSLH 122

Query: 336 DIRHLLLKP 344
           D    L++ 
Sbjct: 123 DFLEALIEA 131

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 36/155 (23%)

Query: 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD----IKNYITQ 257
           +     ++K     P + +    ++  V   L+K R+    +     P     +   +++
Sbjct: 4   AIRTSELLKR----PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAV---VSE 56

Query: 258 SAVVQGLEGCKGRDWFDIIA-----SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD 312
                       RD    +A       P   +     +S   IT+   + +  A ++M+ 
Sbjct: 57  ------------RDILRAVAQRLDLDGPAMPI----ANS--PITVLDTDPVHVAAEKMRR 98

Query: 313 NNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPEL 346
           +NI  + VV     ++VG +SIRD+     +  EL
Sbjct: 99  HNIRHVVVVNK-NGELVGVLSIRDLCFERAILLEL 132

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 25/164 (15%)

Query: 197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSML--SVLLLLSKYRLRNVPIIE-PGTPDIKN 253
           EE    T    ++K  R  P L V T DSM    V  ++S+      P++    +  +  
Sbjct: 5   EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVG 64

Query: 254 YITQSAVVQGLEGCKGRDWFDIIASQPISDLGL----------------PFMSSDEVITI 297
           ++ +  ++  +E    R   D + S  I                       +      T+
Sbjct: 65  FVLRRDLIISIE--NARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS-PFTV 121

Query: 298 QSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHL 340
                +       +   +    V      +++G ++ +D+ +H+
Sbjct: 122 TDLTPMEIVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHI 163

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
           M+ +  +TI        A +  K   +   PVV   + K+VG +S++ I 
Sbjct: 7   MTQN-PVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRIL 54

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 19/123 (15%)

Query: 223 DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 282
             +    L L  KY++R+ P++      +   I+             +        + ++
Sbjct: 17  PATRNYALELFKKYKVRSFPVVN-KEGKLVGIISV------------KRILVNPDEEQLA 63

Query: 283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342
            L    +  D V  ++ N+ + +A K M + +   + VV+  + K VG +++ DI     
Sbjct: 64  ML----VKRD-VPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYF 117

Query: 343 KPE 345
              
Sbjct: 118 AKS 120

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 19/128 (14%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA 277
           LPV   +  L  ++  +     +  +    + ++     +  +++         +   + 
Sbjct: 160 LPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLP 219

Query: 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           ++P++++    M+ D VI    +  + E   +M   +I  +PV+ G+   ++G +   D+
Sbjct: 220 NKPVAEI----MTRD-VIVATPHMTVHEVALKMAKYSIEQLPVIRGEG-DLIGLIRDFDL 273

Query: 338 RHLLLKPE 345
             +L+K +
Sbjct: 274 LKVLVKSK 281

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 16/132 (12%)

Query: 207 SIIKSYRWAPFLPVAT-DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265
           S+  SY      PV T   S       L+       P+++         +  S +++G +
Sbjct: 4   SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERY--LGMVHLSRLLEGRK 61

Query: 266 GCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ 325
           G            + + +  L       V + +  E + +    +       +P+ + + 
Sbjct: 62  GWPT-------VKEKLGEELLE-----TVRSYRPGEQLFDNLISVAAAKCSVVPLAD-ED 108

Query: 326 KKIVGNVSIRDI 337
            +  G VS + I
Sbjct: 109 GRYEGVVSRKRI 120

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 7/51 (13%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
           +++  +           +A +R+  +     PV++G  ++ +G V +  + 
Sbjct: 9   YLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLL 57

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 47.7 bits (113), Expect = 7e-07
 Identities = 19/120 (15%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 278
           +A D  +  V+ +++   +   P++E   +  +   + ++ +VQ L+  +          
Sbjct: 26  LAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQ-AEPPSRAPGHQQ 84

Query: 279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
                L     +    +T+ S   + +A    K  N+  + V      + VG VS  +++
Sbjct: 85  CLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR--GRAVGCVSWVEMK 142

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 44.6 bits (105), Expect = 8e-06
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 288 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE-GQQKKIVGNVSIRDIRHLL 341
           FM+   + T+  +  + E  K +   ++   P+VE  + + +VG V    +   L
Sbjct: 18  FMNHS-ITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQAL 71

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRD 336
            S  I++L LP       + ++S+  + EA   MK + +  +PVV+     ++G V    
Sbjct: 382 WSLAIAELELP----APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQET 437

Query: 337 I-RHLLLKPELFS 348
           +   ++      S
Sbjct: 438 LITQIVSMNRQQS 450

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 33/199 (16%), Positives = 73/199 (36%), Gaps = 42/199 (21%)

Query: 177 KDAPTAADRLHEDFYKVIL-QEEPFKSTTVRSIIKSYRW----------APFLP----VA 221
           KDA +   RL   F+ ++  QEE  +      +  +Y++           P +     + 
Sbjct: 58  KDAVSGTLRL---FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 222 TDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQ-----SAVVQGLEGCKGRDWFDII 276
             D + +   + +KY   NV  ++P    ++  + +     + ++ G+ G  G+ W   +
Sbjct: 115 QRDRLYNDNQVFAKY---NVSRLQPYL-KLRQALLELRPAKNVLIDGVLGS-GKTW---V 166

Query: 277 ASQPISDLGLPFMSSDEV--ITI---QSNELILEAFKRMK---DNNIGGIPVVEGQQKKI 328
           A        +      ++  + +    S E +LE  +++    D N       +      
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDHSSNIK 224

Query: 329 VGNVSIRD-IRHLLLKPEL 346
           +   SI+  +R LL     
Sbjct: 225 LRIHSIQAELRRLLKSKPY 243

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
           ITI  +E +  A   M+ + I G+PVVE   +K+VG ++ +DI 
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIA 145

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQ-QKKIVGNVSIRDIR 338
             +     + +A   M    I G+PVV    ++K+VG ++ RD+R
Sbjct: 124 FFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMR 168

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
           IT+  +  + EA   M +  IGG+PVV+  + ++VG ++ RD+R
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVDE-EGRLVGLLTNRDVR 148

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 338
           +T++  + I +  +    +   G PVV  +  ++VG ++ RD+R
Sbjct: 100 VTVRPEQTIADVMELTHYHGFAGFPVVT-ENNELVGIITGRDVR 142

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIR 338
             +     + EA + M+   I G+P+VE    +K+VG ++ RD+R
Sbjct: 101 FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMR 145

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 350
            D++  +     +  A+  M+D N+  IPV +G    ++G +S  +I    +     +  
Sbjct: 14  MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNN-HLLGMLSTSNITATYMDIWDSNIL 72

Query: 351 R 351
            
Sbjct: 73  A 73

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 271 DWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVG 330
           D F        S      M+ D ++ + +++L+ +    M +      PV++ +  K+VG
Sbjct: 173 DSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVID-ENNKVVG 231

Query: 331 NVSIRDI 337
           +++   +
Sbjct: 232 SIARFHL 238

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 5/46 (10%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQK--KIVGNVSIRDIR 338
             ++ ++   +     +      + V +       ++G V+ RD  
Sbjct: 108 SNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYP 153

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
           I I+   L ++A   M+  +I  + V +G    ++G V + D+
Sbjct: 106 IRIRPGTLAVDALNLMQSRHITCVLVADG--DHLLGVVHMHDL 146

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 295 ITIQSNELILEAFKRMKDNNIGGIPVVE--GQQKKIVGNVSIRDIR 338
           + +  +  + +  +    +   GIP+ E      K+VG V+ RDI 
Sbjct: 119 VVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDID 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
3ddj_A	296	CBS domain-containing protein; structural genomics	99.91
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.91
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.91
3ddj_A	296	CBS domain-containing protein; structural genomics	99.91
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.9
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.9
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.9
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.9
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.89
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.87
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.86
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.86
4esy_A	170	CBS domain containing membrane protein; structural	99.8
4esy_A	170	CBS domain containing membrane protein; structural	99.8
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.79
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.78
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.78
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.78
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.78
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.77
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.77
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.77
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.76
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.76
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.75
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.75
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.75
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.74
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.74
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.74
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.74
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.74
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.73
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.73
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.73
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.73
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.72
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.72
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.71
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.71
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.71
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.71
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.71
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.71
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.71
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.71
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.7
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.7
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.7
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.7
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.69
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.69
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.69
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.69
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.69
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.67
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.67
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.67
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.67
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.67
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.67
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.66
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.66
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.66
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.66
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.66
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.66
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.65
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.65
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.65
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.65
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.64
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.64
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.64
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.64
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.64
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.64
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.64
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.63
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.63
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.63
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.63
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.62
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.62
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.62
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.62
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.61
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.61
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.61
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.6
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.6
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.6
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.6
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.59
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.59
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.57
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.56
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.56
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.53
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.53
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.5
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.5
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.49
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.47
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.43
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.41
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.39
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.35
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.35
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.35
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.31
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.26
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.25
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.24
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.23
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.23
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.21
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.2
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.17
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.16
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.07
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.04
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.01
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.97
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.88
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.88
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.58
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.44

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.91  E-value=1.9e-24  Score=200.76  Aligned_cols=196  Identities=16%  Similarity=0.226  Sum_probs=164.0

Q ss_pred             ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713           42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA  121 (351)
Q Consensus        42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~  121 (351)
                      ...+++++|.   ++++++.+++++.+|++.|.+++++++||+|+++        +++|+++..|++..+          
T Consensus        91 ~~~~v~~im~---~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~--------~lvGivt~~dl~~~~----------  149 (296)
T 3ddj_A           91 STTPIIDYMT---PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIND--------KPVGIVTEREFLLLY----------  149 (296)
T ss_dssp             HTSBGGGTSE---ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTS--------CEEEEEEHHHHGGGG----------
T ss_pred             hcccHHHhcc---CCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCC--------cEEEEEeHHHHHHhh----------
Confidence            4688999997   5788999999999999999999999999998753        899999999988321          


Q ss_pred             hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713          122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK  201 (351)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~  201 (351)
                                                                                               .  ....
T Consensus       150 -------------------------------------------------------------------------~--~~~~  154 (296)
T 3ddj_A          150 -------------------------------------------------------------------------K--DLDE  154 (296)
T ss_dssp             -------------------------------------------------------------------------G--GSCC
T ss_pred             -------------------------------------------------------------------------h--cccc
Confidence                                                                                     0  1133


Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v  281 (351)
                      ..++.++|.    +++.++.+++++.++++.|.+++++++||+|++ |+++|+||.+|+++.+...............++
T Consensus       155 ~~~v~~~m~----~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v  229 (296)
T 3ddj_A          155 IFPVKVFMS----TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVV  229 (296)
T ss_dssp             CCBHHHHSB----CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBH
T ss_pred             cccHHHhhc----CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCH
Confidence            468999998    569999999999999999999999999999974 899999999999998752210000011245678


Q ss_pred             cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      .+    +|. +++++|.+++++.+|+++|.+++.+++||+|+ +|+++|+||..||++.+.+.
T Consensus       230 ~~----~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~Dil~~l~~~  286 (296)
T 3ddj_A          230 KD----VMV-TNLVTIDELASVNRAAAEMIVKRIGSLLILNK-DNTIRGIITERDLLIALHHI  286 (296)
T ss_dssp             HH----HSB-CCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHH
T ss_pred             HH----HhC-CCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEcHHHHHHHHHHH
Confidence            88    586 88999999999999999999999999999997 89999999999999987643

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.91  E-value=4e-23  Score=189.53  Aligned_cols=203  Identities=18%  Similarity=0.314  Sum_probs=160.7

Q ss_pred             ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713           45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV  124 (351)
Q Consensus        45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~  124 (351)
                      ++.+.+.  .++++++++++|+.+|++.|.+++++++||+|++.+       +++|+++..||+.++.......-     
T Consensus         4 ~v~~~i~--~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~-------~~~Givt~~di~~~~~~~~~~~~-----   69 (280)
T 3kh5_A            4 RVMKIAQ--NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNN-------KVVGIITSMDIVDFMGGGSKYNL-----   69 (280)
T ss_dssp             BGGGTSC--CSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTC-------BEEEEEEHHHHHHHTTTSGGGHH-----
T ss_pred             hHHHHhc--CCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCC-------eEEEEEEHHHHHHHhcccchhhh-----
Confidence            4555443  368999999999999999999999999999996432       89999999999965422111000     


Q ss_pred             ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713          125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~  204 (351)
                                                      .              .           ......+..       ....+
T Consensus        70 --------------------------------~--------------~-----------~~~~~~~~~-------~~~~~   85 (280)
T 3kh5_A           70 --------------------------------I--------------R-----------EKHERNFLA-------AINEP   85 (280)
T ss_dssp             --------------------------------H--------------H-----------TTSTTCHHH-------HTTSB
T ss_pred             --------------------------------h--------------h-----------hccccchhH-------Hhhhh
Confidence                                            0              0           000011111       11468


Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccccc
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL  284 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L  284 (351)
                      ++++|+    +++.++++++++.++++.|.+++++++||+|+ +|+++|++|.+|+++.+.....       ...++.+ 
T Consensus        86 v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~-------~~~~v~~-  152 (280)
T 3kh5_A           86 VREIME----ENVITLKENADIDEAIETFLTKNVGGAPIVND-ENQLISLITERDVIRALLDKID-------ENEVIDD-  152 (280)
T ss_dssp             GGGTSB----CSCCCEETTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHGGGSC-------TTCBSGG-
T ss_pred             HHHhcC----CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC-CCEEEEEEEHHHHHHHHhhcCC-------CCCCHHH-
Confidence            999999    56999999999999999999999999999998 4899999999999998865432       2347888 


Q ss_pred             ccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          285 GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       285 ~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                         +|. ++++++++++++.++++.|.+++.+.+||++  +|+++|+||..|+++.+...
T Consensus       153 ---~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~~~  206 (280)
T 3kh5_A          153 ---YIT-RDVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLGSD  206 (280)
T ss_dssp             ---GCB-CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHTSH
T ss_pred             ---HhC-CCCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHhhh
Confidence               586 8889999999999999999999999999995  59999999999999988654

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.91  E-value=1.8e-23  Score=196.48  Aligned_cols=222  Identities=13%  Similarity=0.230  Sum_probs=168.4

Q ss_pred             HHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713           36 TLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA  115 (351)
Q Consensus        36 ~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~  115 (351)
                      .+..+|...++.++|. ++.++++++.++|+.+|++.|.+++++++||+|++.+       +++|+++..|++..+....
T Consensus        22 ~i~~~l~~~~~~d~m~-~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~-------~lvGilt~~Dl~~~l~~~~   93 (323)
T 3t4n_C           22 SIRKFLNSKTSYDVLP-VSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTS-------RFAGLLTTTDFINVIQYYF   93 (323)
T ss_dssp             HHHHHHHHSBHHHHSC-SEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTT-------EEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchHhhCC-CCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCC-------eEEEEEEHHHHHHHHHHHH
Confidence            4556778999999997 5678999999999999999999999999999997643       8999999999997665432


Q ss_pred             HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhh-hhHHHHHh
Q 018713          116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRL-HEDFYKVI  194 (351)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~l  194 (351)
                      ..... +                               . .                          .+.. ...+.+. 
T Consensus        94 ~~~~~-~-------------------------------~-~--------------------------l~~~~~~~v~~i-  113 (323)
T 3t4n_C           94 SNPDK-F-------------------------------E-L--------------------------VDKLQLDGLKDI-  113 (323)
T ss_dssp             HCGGG-G-------------------------------G-G--------------------------GGGCBHHHHHHH-
T ss_pred             cCcch-h-------------------------------H-H--------------------------HHHHHHHHHHHH-
Confidence            11000 0                               0 0                          0000 0000000 


Q ss_pred             hhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCC-----EEEEEeHHHHHHHhhcCCC
Q 018713          195 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD-----IKNYITQSAVVQGLEGCKG  269 (351)
Q Consensus       195 ~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~-----liGiIt~~dil~~l~~~~~  269 (351)
                              ..+.++|.    .+++++++++++.+|++.|.+++++++||+|++ +.     ++|++|.+|+++++..+..
T Consensus       114 --------~~~~~~~~----~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~~~~~l~Givt~~di~~~l~~~~~  180 (323)
T 3t4n_C          114 --------ERALGVDQ----LDTASIHPSRPLFEACLKMLESRSGRIPLIDQD-EETHREIVVSVLTQYRILKFVALNCR  180 (323)
T ss_dssp             --------HHHTTC--------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEEC-TTTCCEEEEEEEEHHHHHHHHHHHCG
T ss_pred             --------HHHhCCCC----CCceEeCCCCcHHHHHHHHHhCCeeEEEEEecC-CCCCccceEEEecHHHHHHHHHhcCC
Confidence                    11233445    558899999999999999999999999999974 54     9999999999998864321


Q ss_pred             CchhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          270 RDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       270 ~~~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      .   ..+...++.+++++ |. ++++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+.
T Consensus       181 ~---~~~~~~~v~~~~~~-m~-~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~  249 (323)
T 3t4n_C          181 E---THFLKIPIGDLNII-TQ-DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGG  249 (323)
T ss_dssp             G---GGGCCSBGGGTTCS-BC-TTCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETTHHHHHHHTT
T ss_pred             c---hhhhhCcHHHcCCC-CC-CCcEEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHHHHHHhhc
Confidence            1   22346678884332 65 88999999999999999999999999999998 89999999999999987654

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.91  E-value=1.3e-23  Score=195.04  Aligned_cols=198  Identities=16%  Similarity=0.210  Sum_probs=164.8

Q ss_pred             HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713           40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA  119 (351)
Q Consensus        40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~  119 (351)
                      .+...+|+++|.   ++++++++++|+.+|++.|.+++++++||+| +         +++|+++..||+.++......  
T Consensus        16 ~~~~~~V~dim~---~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~---------~l~GivT~~Di~~~~~~~~~~--   80 (296)
T 3ddj_A           16 YFQGMNIETLMI---KNPPILSKEDRLGSAFKKINEGGIGRIIVAN-E---------KIEGLLTTRDLLSTVESYCKD--   80 (296)
T ss_dssp             TTCCSSGGGTCE---ESCCEECTTSBHHHHHHHTTGGGCCEEEEES-S---------SEEEEEEHHHHHGGGTTCC----
T ss_pred             hhcccCHHHhcc---CCCcEECCCccHHHHHHHHHHCCCceEEEEC-C---------eEEEEEeHHHHHHHhcccccc--
Confidence            456789999997   5899999999999999999999999999998 3         899999999999543211000  


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                                                                                      .....++..       
T Consensus        81 ----------------------------------------------------------------~~~~~~~~~-------   89 (296)
T 3ddj_A           81 ----------------------------------------------------------------SCSQGDLYH-------   89 (296)
T ss_dssp             -----------------------------------------------------------------CCHHHHHH-------
T ss_pred             ----------------------------------------------------------------cccchhhHH-------
Confidence                                                                            001122221       


Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      ....+++++|+    ++++++.+++++.++++.|.+++++++||+|++ |+++|++|.+|+++.+....        ...
T Consensus        90 ~~~~~v~~im~----~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~lvGivt~~dl~~~~~~~~--------~~~  156 (296)
T 3ddj_A           90 ISTTPIIDYMT----PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYKDLD--------EIF  156 (296)
T ss_dssp             HHTSBGGGTSE----ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGGGSC--------CCC
T ss_pred             HhcccHHHhcc----CCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHhhhccc--------ccc
Confidence            12467999999    458999999999999999999999999999884 89999999999988775432        345


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~  342 (351)
                      ++.+    +|. ++++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.
T Consensus       157 ~v~~----~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          157 PVKV----FMS-TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             BHHH----HSB-CSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             cHHH----hhc-CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence            7888    586 88999999999999999999999999999997 899999999999998875

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.90  E-value=1.2e-23  Score=193.08  Aligned_cols=192  Identities=17%  Similarity=0.293  Sum_probs=160.3

Q ss_pred             cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713           43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF  122 (351)
Q Consensus        43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~  122 (351)
                      +.+++++|.   ++++++++++++.+|++.|.+++++++||+|+++        +++|+++..|++.++...        
T Consensus        83 ~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~--------  143 (280)
T 3kh5_A           83 NEPVREIME---ENVITLKENADIDEAIETFLTKNVGGAPIVNDEN--------QLISLITERDVIRALLDK--------  143 (280)
T ss_dssp             TSBGGGTSB---CSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTC--------BEEEEEEHHHHHHHHGGG--------
T ss_pred             hhhHHHhcC---CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCC--------EEEEEEEHHHHHHHHhhc--------
Confidence            578999997   5889999999999999999999999999998753        899999999988543111        


Q ss_pred             ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713          123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS  202 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~  202 (351)
                                                                                                  ....
T Consensus       144 ----------------------------------------------------------------------------~~~~  147 (280)
T 3kh5_A          144 ----------------------------------------------------------------------------IDEN  147 (280)
T ss_dssp             ----------------------------------------------------------------------------SCTT
T ss_pred             ----------------------------------------------------------------------------CCCC
Confidence                                                                                        1223


Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCc-----hhhhhc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-----WFDIIA  277 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~-----~l~~l~  277 (351)
                      .++.++|.    +++.++++++++.++++.|.+++++++||++  +|+++|+||.+|+++.+.......     ......
T Consensus       148 ~~v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~  221 (280)
T 3kh5_A          148 EVIDDYIT----RDVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREIT  221 (280)
T ss_dssp             CBSGGGCB----CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHH
T ss_pred             CCHHHHhC----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhh
Confidence            47889998    5689999999999999999999999999994  369999999999999885321000     011124


Q ss_pred             cCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713          278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (351)
Q Consensus       278 ~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l  341 (351)
                      ..++.+    +|. +++++|++++++.+|++.|.+++++++||+|+ +|+++|+||.+||++++
T Consensus       222 ~~~v~~----~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          222 NVRMEE----IMK-RDVITAKEGDKLKKIAEIMVTNDIGALPVVDE-NLRIKGIITEKDVLKYF  279 (280)
T ss_dssp             HCBHHH----HSB-SSCCCBCTTCBHHHHHHHHHHHTCCEEEEECT-TCBEEEEEEHHHHGGGG
T ss_pred             CCcHHH----Hhc-CCCEEECCCCCHHHHHHHHHHCCCCEEEEECC-CCeEEEEEeHHHHHHhh
Confidence            567788    586 88999999999999999999999999999998 88999999999999875

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.90  E-value=5.5e-23  Score=193.93  Aligned_cols=229  Identities=12%  Similarity=0.158  Sum_probs=172.0

Q ss_pred             hHHHHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHH
Q 018713           33 LQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVL  112 (351)
Q Consensus        33 ~~~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~  112 (351)
                      ..+.+..+|.+.+++++|. ++++++++++++|+.+|++.|.+++++++||+|++.+       +++|+|+..|++..+.
T Consensus        24 ~~~~~~~~l~~~~v~dim~-p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~-------~~vGivt~~Dll~~l~   95 (330)
T 2v8q_E           24 NSSVYTTFMKSHRCYDLIP-TSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQ-------SFVGMLTITDFINILH   95 (330)
T ss_dssp             CSCHHHHHHHHSBGGGGSC-SEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTT-------EEEEEEEHHHHHHHHH
T ss_pred             hhHHHHHHHHcCcHhhhcc-CCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCC-------eEEEEEEHHHHHHHHH
Confidence            3345678899999999995 4578999999999999999999999999999997632       7999999999997655


Q ss_pred             HhhHHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHH
Q 018713          113 ETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYK  192 (351)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  192 (351)
                      ..........               .                                        ..  ......++. 
T Consensus        96 ~~~~~~~~~~---------------~----------------------------------------~l--~~~~~~~~~-  117 (330)
T 2v8q_E           96 RYYKSALVQI---------------Y----------------------------------------EL--EEHKIETWR-  117 (330)
T ss_dssp             HHHHHHTTTC---------------C----------------------------------------CG--GGCBHHHHH-
T ss_pred             HHHhccccch---------------h----------------------------------------HH--hhccHHHHH-
Confidence            4321110000               0                                        00  000001111 


Q ss_pred             HhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch
Q 018713          193 VILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW  272 (351)
Q Consensus       193 ~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~  272 (351)
                                .+++++|.    +++.++++++++.++++.|.+++++++||+|+++|+++|+||.+|+++++........
T Consensus       118 ----------~~~~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~  183 (330)
T 2v8q_E          118 ----------EVYLQDSF----KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFP  183 (330)
T ss_dssp             ----------HHHSSSSC----CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSS
T ss_pred             ----------HHHhhccc----CCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccC
Confidence                      13456787    5699999999999999999999999999998622799999999999998854321111


Q ss_pred             hhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          273 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       273 l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      ...+...++.++.  +|..++++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+...
T Consensus       184 ~~~~~~~~v~~~~--v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~l~Giit~~dl~~~~~~~  252 (330)
T 2v8q_E          184 KPEFMSKSLEELQ--IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEK  252 (330)
T ss_dssp             CCGGGGSBHHHHT--CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSS
T ss_pred             chhhhcCCHHHhc--ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEHHHHHHHHhcc
Confidence            1222345566642  132267889999999999999999999999999997 79999999999999887643

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.90  E-value=5.2e-23  Score=193.38  Aligned_cols=191  Identities=16%  Similarity=0.214  Sum_probs=156.2

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      ++++++++++++.+|++.|.+++++++||+|+++.   +...+++|+++..|++.++......                 
T Consensus       122 ~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~---~~~~~l~Givt~~di~~~l~~~~~~-----------------  181 (323)
T 3t4n_C          122 LDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEE---THREIVVSVLTQYRILKFVALNCRE-----------------  181 (323)
T ss_dssp             --CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTT---TCCEEEEEEEEHHHHHHHHHHHCGG-----------------
T ss_pred             CCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCC---CCccceEEEecHHHHHHHHHhcCCc-----------------
Confidence            68889999999999999999999999999987531   0111399999999999765433110                 


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhh---hhc
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSI---IKS  211 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~di---m~~  211 (351)
                                                                                     ......+++++   |. 
T Consensus       182 ---------------------------------------------------------------~~~~~~~v~~~~~~m~-  197 (323)
T 3t4n_C          182 ---------------------------------------------------------------THFLKIPIGDLNIITQ-  197 (323)
T ss_dssp             ---------------------------------------------------------------GGGCCSBGGGTTCSBC-
T ss_pred             ---------------------------------------------------------------hhhhhCcHHHcCCCCC-
Confidence                                                                           01234678888   87 


Q ss_pred             cCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCC
Q 018713          212 YRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS  291 (351)
Q Consensus       212 ~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~  291 (351)
                         ++++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+....    . .....++.+    +|. 
T Consensus       198 ---~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~~----~-~~~~~~v~~----~m~-  263 (323)
T 3t4n_C          198 ---DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGI----Y-NDLSLSVGE----ALM-  263 (323)
T ss_dssp             ---TTCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETTHHHHHHHTTH----H-HHTTSBHHH----HGG-
T ss_pred             ---CCcEEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHHHHHHhhch----h-hhccCCHHH----HHh-
Confidence               56999999999999999999999999999998 489999999999999886432    0 113557777    575 


Q ss_pred             C------CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          292 D------EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       292 ~------~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      +      ++++|++++++.+++++|.+++++++||+|+ +|+++|+||.+||++++.+.
T Consensus       264 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          264 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             GSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECT-TSBEEEEEEHHHHHHHHHHC
T ss_pred             hccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECC-CCcEEEEEEHHHHHHHHHhc
Confidence            4      7899999999999999999999999999998 89999999999999988653

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.90  E-value=3.6e-23  Score=190.40  Aligned_cols=199  Identities=16%  Similarity=0.260  Sum_probs=153.5

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHH-HHHHhhHHHh
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL-WVLETAELAA  119 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~-~~~~~~~~~~  119 (351)
                      +.+.++.++|.   .+++++++++++.+|++.|.++++..+||+|+++        +++|+++..|++. ++...     
T Consensus        57 ~~~~~v~~~m~---~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~--------~~~Giit~~di~~~~~~~~-----  120 (282)
T 2yzq_A           57 PDEEQLAMLVK---RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG--------KPVGILTVGDIIRRYFAKS-----  120 (282)
T ss_dssp             -------CCCB---SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTS--------CEEEEEEHHHHHHHTTTTC-----
T ss_pred             hccCCHHHHcC---CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCC--------EEEEEEEHHHHHHHHHhcc-----
Confidence            34678888886   4688999999999999999999999999998753        7999999999884 21100     


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                                                                                                    ..
T Consensus       121 ------------------------------------------------------------------------------~~  122 (282)
T 2yzq_A          121 ------------------------------------------------------------------------------EK  122 (282)
T ss_dssp             ------------------------------------------------------------------------------SG
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          00


Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH------HHhh------cC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV------QGLE------GC  267 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil------~~l~------~~  267 (351)
                      ....+++++|.    .+++++++++++.++++.|.+++++++||+|++ |+++|+||.+|++      +++.      ..
T Consensus       123 ~~~~~v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~  197 (282)
T 2yzq_A          123 YKGVEIEPYYQ----RYVSIVWEGTPLKAALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASS  197 (282)
T ss_dssp             GGGCBSTTTSB----SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC-----------
T ss_pred             cccCcHHHHhC----CCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHhhhhhhhhhhccchhhhhh
Confidence            12356788997    568999999999999999999999999999874 7999999999998      4442      00


Q ss_pred             --------CCCchh----hhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHH
Q 018713          268 --------KGRDWF----DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR  335 (351)
Q Consensus       268 --------~~~~~l----~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~  335 (351)
                              .....+    ......++.+    +|+ +++++|.+++++.+|+++|.+++++++||+|+ +|+++|+||.+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGiit~~  271 (282)
T 2yzq_A          198 EEEWILESHPTLLFEKFELQLPNKPVAE----IMT-RDVIVATPHMTVHEVALKMAKYSIEQLPVIRG-EGDLIGLIRDF  271 (282)
T ss_dssp             ---------------------CCCBGGG----TCB-SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET-TTEEEEEEEHH
T ss_pred             hhhhhcccchHHHHhHhhhhhccCCHHH----hcC-CCCceeCCCCCHHHHHHHHHHcCcceeEEECC-CCCEEEEEeHH
Confidence                    000000    1123567888    686 89999999999999999999999999999998 88999999999


Q ss_pred             HHHHHhcCc
Q 018713          336 DIRHLLLKP  344 (351)
Q Consensus       336 DIl~~l~~~  344 (351)
                      ||++.+.+.
T Consensus       272 Dil~~~~~~  280 (282)
T 2yzq_A          272 DLLKVLVKS  280 (282)
T ss_dssp             HHGGGGCC-
T ss_pred             HHHHHHHhh
Confidence            999988764

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.89  E-value=7.1e-22  Score=186.48  Aligned_cols=225  Identities=18%  Similarity=0.235  Sum_probs=167.7

Q ss_pred             HHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713           36 TLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA  115 (351)
Q Consensus        36 ~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~  115 (351)
                      .+..++.+.++.++|. ++.+++++++++|+.+|++.|.+++++++||+|++.       ++++|+|+..||+.++....
T Consensus        14 ~~~~~l~~~~v~dim~-~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~-------~~~vGiv~~~Dl~~~~~~~~   85 (334)
T 2qrd_G           14 EIQAFIRSRTSYDVLP-TSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLTMADFVNVIKYYY   85 (334)
T ss_dssp             HHHHHHHHSBGGGGSC-SEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHhcCchhhhCC-CCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCC-------CeEEEEEEHHHHHHHHHHHh
Confidence            3556788899999996 556799999999999999999999999999998753       28999999999997654321


Q ss_pred             HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhh
Q 018713          116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL  195 (351)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~  195 (351)
                      .....                             +.....+                   .       .....++.+.  
T Consensus        86 ~~~~~-----------------------------~~~~~~~-------------------~-------~~~~~~i~~~--  108 (334)
T 2qrd_G           86 QSSSF-----------------------------PEAIAEI-------------------D-------KFRLLGLREV--  108 (334)
T ss_dssp             HHCSC-----------------------------GGGGGGG-------------------G-------SCBHHHHHHH--
T ss_pred             hccCC-----------------------------ccHHHHH-------------------h-------hhchhhHHHH--
Confidence            10000                             0000000                   0       0000111111  


Q ss_pred             hcCCCCcCchHhhhhccCCCCc--EEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCC----EEEEEeHHHHHHHhhcCCC
Q 018713          196 QEEPFKSTTVRSIIKSYRWAPF--LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD----IKNYITQSAVVQGLEGCKG  269 (351)
Q Consensus       196 ~~~~~~~~~V~dim~~~~~~~~--~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~----liGiIt~~dil~~l~~~~~  269 (351)
                               .+++|.    .++  +++.+++++.++++.|.+++++++||+|+++++    ++|++|.+|+++++..+..
T Consensus       109 ---------l~~im~----~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~  175 (334)
T 2qrd_G          109 ---------ERKIGA----IPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK  175 (334)
T ss_dssp             ---------HHHHTC----SCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCG
T ss_pred             ---------HHhhcc----CCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhcc
Confidence                     135676    335  899999999999999999999999999874234    9999999999998854211


Q ss_pred             CchhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          270 RDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       270 ~~~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                        .. .....++.+++. +|. ++++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+.
T Consensus       176 --~~-~~~~~~v~~l~~-~m~-~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~-~~~~~Giit~~dl~~~~~~~  244 (334)
T 2qrd_G          176 --ET-AMLRVPLNQMTI-GTW-SNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDG  244 (334)
T ss_dssp             --GG-GGCCCBGGGSSC-SBC-SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETHHHHHHHTTS
T ss_pred             --ch-hhhhCcHHHhCC-ccc-CCceEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHHHHhhcc
Confidence              11 123456777422 265 88899999999999999999999999999998 89999999999999987654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.87  E-value=3.1e-22  Score=184.10  Aligned_cols=177  Identities=17%  Similarity=0.240  Sum_probs=134.5

Q ss_pred             ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713           45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV  124 (351)
Q Consensus        45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~  124 (351)
                      ++.++|.   ++++++++++|+.+|++.|.++++.++||+|+++        +++|+++..|++..              
T Consensus         2 ~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~--------~~~Giv~~~dl~~~--------------   56 (282)
T 2yzq_A            2 RVKTIMT---QNPVTITLPATRNYALELFKKYKVRSFPVVNKEG--------KLVGIISVKRILVN--------------   56 (282)
T ss_dssp             BHHHHSE---ESCCCEESSCC------------CCEEEEECTTC--------CEEEEEESSCC-----------------
T ss_pred             chHHhcc---CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCC--------cEEEEEEHHHHHhh--------------
Confidence            4566775   6788999999999999999999999999998643        89999998877621              


Q ss_pred             ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713          125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~  204 (351)
                                                                                                 ....+
T Consensus        57 ---------------------------------------------------------------------------~~~~~   61 (282)
T 2yzq_A           57 ---------------------------------------------------------------------------PDEEQ   61 (282)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------------------------------------------hccCC
Confidence                                                                                       12356


Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH-HhhcCCCCchhhhhccCcccc
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-GLEGCKGRDWFDIIASQPISD  283 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~-~l~~~~~~~~l~~l~~~~v~~  283 (351)
                      ++++|.    +++.++++++++.++++.|.+++.+++||+|++ |+++|++|.+|+++ ++..+.   .   ....++.+
T Consensus        62 v~~~m~----~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~---~---~~~~~v~~  130 (282)
T 2yzq_A           62 LAMLVK----RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYFAKSE---K---YKGVEIEP  130 (282)
T ss_dssp             --CCCB----SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCS---G---GGGCBSTT
T ss_pred             HHHHcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhccC---C---cccCcHHH
Confidence            788888    458899999999999999999999999999984 89999999999998 765421   0   13456778


Q ss_pred             cccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 018713          284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR  338 (351)
Q Consensus       284 L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl  338 (351)
                          +|. .+++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..|++
T Consensus       131 ----~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dl~  179 (282)
T 2yzq_A          131 ----YYQ-RYVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLL  179 (282)
T ss_dssp             ----TSB-SCCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGG
T ss_pred             ----HhC-CCCEEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHh
Confidence                585 78899999999999999999999999999997 79999999999998

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.86  E-value=4.3e-21  Score=181.08  Aligned_cols=190  Identities=14%  Similarity=0.196  Sum_probs=152.7

Q ss_pred             cEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccccc
Q 018713           57 VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGT  136 (351)
Q Consensus        57 ~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (351)
                      ++++.+++++.+|++.|.+++++++||+|++++.   ....++|+++..||+.++......                   
T Consensus       119 ~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~---~~~~~~Givt~~dl~~~~~~~~~~-------------------  176 (334)
T 2qrd_G          119 TIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET---GSEMIVSVLTQYRILKFISMNCKE-------------------  176 (334)
T ss_dssp             CCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTT---TEEEEEEEEEHHHHHHHHHHHCGG-------------------
T ss_pred             eeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCc---CccceEEEeeHHHHHHHHHhhccc-------------------
Confidence            4899999999999999999999999999875320   001299999999999665322100                   


Q ss_pred             ccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHh---hhhccC
Q 018713          137 VGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRS---IIKSYR  213 (351)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~d---im~~~~  213 (351)
                                                                                   ......++++   +|.   
T Consensus       177 -------------------------------------------------------------~~~~~~~v~~l~~~m~---  192 (334)
T 2qrd_G          177 -------------------------------------------------------------TAMLRVPLNQMTIGTW---  192 (334)
T ss_dssp             -------------------------------------------------------------GGGCCCBGGGSSCSBC---
T ss_pred             -------------------------------------------------------------hhhhhCcHHHhCCccc---
Confidence                                                                         0012356777   477   


Q ss_pred             CCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCC--
Q 018713          214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS--  291 (351)
Q Consensus       214 ~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~--  291 (351)
                       +++.++++++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+..... .    ....++.+    +|..  
T Consensus       193 -~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~-~~~~~Giit~~dl~~~~~~~~~-~----~~~~~v~~----~m~~~~  261 (334)
T 2qrd_G          193 -SNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDGDY-S----NLDLSVGE----ALLKRP  261 (334)
T ss_dssp             -SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETHHHHHHHTTSCG-G----GGGSBHHH----HHTTCC
T ss_pred             -CCceEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHHHHhhcccc-c----cccCcHHH----HHhccc
Confidence             55889999999999999999999999999997 4899999999999998864320 0    13456777    4752  


Q ss_pred             ---CCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          292 ---DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       292 ---~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                         +++++|.+++++.++++.|.+++++++||+|+ +|+++|+||..||++.+.+.
T Consensus       262 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~l~Giit~~dil~~~~~~  316 (334)
T 2qrd_G          262 ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYIIYD  316 (334)
T ss_dssp             TTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECT-TCBEEEEEEHHHHHHHHHSC
T ss_pred             ccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHHHHHHHhc
Confidence               37899999999999999999999999999997 89999999999999988664

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.86  E-value=3.2e-21  Score=181.80  Aligned_cols=198  Identities=17%  Similarity=0.212  Sum_probs=154.7

Q ss_pred             cccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccc
Q 018713           46 VLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVG  125 (351)
Q Consensus        46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~  125 (351)
                      +.++|.   ++++++++++++.+|++.|.+++++.+||+|++.+       +++|+|+..|++.++.......       
T Consensus       120 ~~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~-------~~~Givt~~dl~~~~~~~~~~~-------  182 (330)
T 2v8q_E          120 YLQDSF---KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESG-------NTLYILTHKRILKFLKLFITEF-------  182 (330)
T ss_dssp             HSSSSC---CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTC-------CEEEEECHHHHHHHHHHHSCSS-------
T ss_pred             Hhhccc---CCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCC-------cEEEEEcHHHHHHHHHHHhhcc-------
Confidence            345665   67899999999999999999999999999997222       7999999999996543221000       


Q ss_pred             cccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCch
Q 018713          126 TATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTV  205 (351)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V  205 (351)
                                              +                                    .          ..+...++
T Consensus       183 ------------------------~------------------------------------~----------~~~~~~~v  192 (330)
T 2v8q_E          183 ------------------------P------------------------------------K----------PEFMSKSL  192 (330)
T ss_dssp             ------------------------S------------------------------------C----------CGGGGSBH
T ss_pred             ------------------------C------------------------------------c----------hhhhcCCH
Confidence                                    0                                    0          00122455


Q ss_pred             Hhh--hhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713          206 RSI--IKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (351)
Q Consensus       206 ~di--m~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~  283 (351)
                      .++  |+   ..++.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+..... ..    ...++.+
T Consensus       193 ~~~~v~~---~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~l~Giit~~dl~~~~~~~~~-~~----~~~~v~~  263 (330)
T 2v8q_E          193 EELQIGT---YANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKTY-NN----LDVSVTK  263 (330)
T ss_dssp             HHHTCSB---CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSCC-CC----CSSBHHH
T ss_pred             HHhcccC---cCCceEECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEHHHHHHHHhcccc-cc----ccCcHHH
Confidence            665  43   034889999999999999999999999999997 4799999999999988754321 00    1345666


Q ss_pred             cccCccC-----CCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          284 LGLPFMS-----SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       284 L~~~~m~-----~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                          +|.     .+++++|++++++.+++++|.+++++++||+|+ +|+++|+||..||++.+.+.
T Consensus       264 ----~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-~g~l~Giit~~Dil~~~~~~  324 (330)
T 2v8q_E          264 ----ALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALVLT  324 (330)
T ss_dssp             ----HGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHSS
T ss_pred             ----HHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcC-CCcEEEEEeHHHHHHHHHhh
Confidence                342     278899999999999999999999999999998 89999999999999988765

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.80  E-value=8.3e-20  Score=156.11  Aligned_cols=133  Identities=24%  Similarity=0.351  Sum_probs=111.4

Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCc---------
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD---------  271 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~---------  271 (351)
                      ...+|+++|+    ++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.........         
T Consensus        16 ~~~~V~diM~----~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~   90 (170)
T 4esy_A           16 RQVPIRDILT----SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-NGHLVGIITESDFLRGSIPFWIYEASEILSRAI   90 (170)
T ss_dssp             HTSBGGGGCC----SCCCCEETTSBHHHHHHHHHHTTCSEEEEECT-TSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTS
T ss_pred             cCCCHHHhcC----CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC-CccEEEEEEHHHHHHHHhhccccchhhhhhhcc
Confidence            3578999999    66999999999999999999999999999998 489999999999987654321000         


Q ss_pred             -------hhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          272 -------WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       272 -------~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                             ..+.....++++    +|+ +++++|++++++.+|+++|.+++++++||+|+  |+++|+||.+||++++...
T Consensus        91 ~~~~~~~~~~~~~~~~v~~----im~-~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGivt~~Dil~~l~~~  163 (170)
T 4esy_A           91 PAPEVEHLFETGRKLTASA----VMT-QPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD--GVPVGIVTRRDLLKLLLLE  163 (170)
T ss_dssp             CHHHHHHHHHHHTTCBHHH----HCB-CCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHTTTSCCC
T ss_pred             chhhHHhhhccccccchhh----hcc-cCcccCCcchhHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHHHHHHhc
Confidence                   011223556777    687 89999999999999999999999999999986  9999999999999987654


Q ss_pred             c
Q 018713          345 E  345 (351)
Q Consensus       345 ~  345 (351)
                      +
T Consensus       164 ~  164 (170)
T 4esy_A          164 E  164 (170)
T ss_dssp             -
T ss_pred             c
Confidence            3

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.80  E-value=1.7e-19  Score=154.17  Aligned_cols=154  Identities=17%  Similarity=0.225  Sum_probs=116.5

Q ss_pred             HHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713           36 TLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA  115 (351)
Q Consensus        36 ~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~  115 (351)
                      .+...+.++||+++|+   ++++++++++|+.+|++.|.+++++++||+|+++        +++|+|+..||+.......
T Consensus        10 ~~~~~l~~~~V~diM~---~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g--------~lvGiit~~Dll~~~~~~~   78 (170)
T 4esy_A           10 AIARAIRQVPIRDILT---SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNG--------HLVGIITESDFLRGSIPFW   78 (170)
T ss_dssp             HHHHHHHTSBGGGGCC---SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTS--------CEEEEEEGGGGGGGTCCTT
T ss_pred             HHHHHHcCCCHHHhcC---CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCc--------cEEEEEEHHHHHHHHhhcc
Confidence            4556788999999997   6899999999999999999999999999999764        8999999999985433221


Q ss_pred             HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhh
Q 018713          116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL  195 (351)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~  195 (351)
                      .......                      +....                                    ......... 
T Consensus        79 ~~~~~~~----------------------~~~~~------------------------------------~~~~~~~~~-   99 (170)
T 4esy_A           79 IYEASEI----------------------LSRAI------------------------------------PAPEVEHLF-   99 (170)
T ss_dssp             HHHHHHH----------------------HTTTS------------------------------------CHHHHHHHH-
T ss_pred             ccchhhh----------------------hhhcc------------------------------------chhhHHhhh-
Confidence            1110000                      00000                                    000111111 


Q ss_pred             hcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       196 ~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                        ......+++++|+    ++++++++++++.+|++.|.+++++++||+|+  |+++|+||++||++++...
T Consensus       100 --~~~~~~~v~~im~----~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGivt~~Dil~~l~~~  163 (170)
T 4esy_A          100 --ETGRKLTASAVMT----QPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD--GVPVGIVTRRDLLKLLLLE  163 (170)
T ss_dssp             --HHHTTCBHHHHCB----CCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHTTTSCCC
T ss_pred             --ccccccchhhhcc----cCcccCCcchhHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHHHHHHhc
Confidence              1134578999999    66999999999999999999999999999985  5999999999999988543

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.79  E-value=7.3e-19  Score=143.62  Aligned_cols=126  Identities=13%  Similarity=0.150  Sum_probs=108.6

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      .+|+++|++.  .++.++++++++.+|++.|.+++++++||+++++++++|+||.+|+++.+..+..      +...++.
T Consensus         2 ~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~------~~~~~v~   73 (130)
T 3hf7_A            2 VSVNDIMVPR--NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE------FTKEIML   73 (130)
T ss_dssp             CBHHHHSEEG--GGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC------CCHHHHH
T ss_pred             cCHHHhCccH--HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc------cchhhHH
Confidence            5789999854  5689999999999999999999999999997534799999999999998865431      1234577


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      +    +|  ++++++++++++.++++.|.+++++.+||+|+ +|+++|+||..||++.+.+
T Consensus        74 ~----~m--~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           74 R----AA--DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             H----HS--BCCCEEETTCBHHHHHHHHHHHCCCEEEEECT-TSCEEEEEEHHHHHHHHHC
T ss_pred             H----hc--cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC-CCCEEEEeeHHHHHHHHhC
Confidence            7    46  57789999999999999999999999999998 8999999999999998764

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.78  E-value=1.1e-18  Score=147.39  Aligned_cols=127  Identities=15%  Similarity=0.213  Sum_probs=110.0

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      ..++++|+|.  .++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++++.....  ....+...++.
T Consensus        15 ~~~~~iM~P~--~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~-~~~lvGiit~~Di~~~~~~~~~--~~~~~~~~~v~   89 (156)
T 3k6e_A           15 GQEETFLTPA--KNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMAYQMEHDL--SQEIMADTDIV   89 (156)
T ss_dssp             TTGGGGEEET--TSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTC--CHHHHTTSBGG
T ss_pred             ccHHHhCcch--hHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEecchhhhhhhccc--ccccccccCHH
Confidence            5789999976  88999999999999999999999999999998 4899999999999998765421  12234567888


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~  342 (351)
                      +    +|. ++++++++++++.+|++.|.++++  +||||+ +|+++|+||.+||++.+.
T Consensus        90 ~----im~-~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~-~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           90 H----MTK-TDVAVVSPDFTITEVLHKLVDESF--LPVVDA-EGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             G----TCB-CSCCCBCTTCCHHHHHHHTTTSSE--EEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             H----hhc-CCceecccccHHHHHHHHHHHcCC--eEEEec-CCEEEEEEEHHHHHHHHH
Confidence            8    686 899999999999999999988764  999998 999999999999999874

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.78  E-value=3.5e-18  Score=142.32  Aligned_cols=127  Identities=18%  Similarity=0.280  Sum_probs=111.4

Q ss_pred             CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713          199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (351)
Q Consensus       199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~  278 (351)
                      .+...+|+++|++.  .++.++++++++.+|++.|.+++++++||+|++.|+++|+||.+|+++.+....         .
T Consensus        19 ~l~~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~---------~   87 (148)
T 3lv9_A           19 EFEEKKIREIMVPR--TDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN---------K   87 (148)
T ss_dssp             GGGTCBGGGTSEET--TTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS---------C
T ss_pred             ccCCCCHHHccccH--HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC---------C
Confidence            36678999999953  369999999999999999999999999999873269999999999998875431         4


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .++.+    +|  ++++++++++++.+++++|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus        88 ~~v~~----~m--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           88 IELEE----IL--RDIIYISENLTIDKALERIRKEKLQLAIVVDE-YGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             CCGGG----TC--BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT-TSSEEEEEEHHHHHHHHHH
T ss_pred             ccHHH----hc--CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence            57888    57  57889999999999999999999999999998 8999999999999998753

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.78  E-value=8.7e-19  Score=142.91  Aligned_cols=127  Identities=12%  Similarity=0.179  Sum_probs=108.3

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      +...+|+++|++.  .++.++++++++.+|++.|.+++++++||+|++.|+++|+||.+|+++.+..+.        ...
T Consensus         3 l~~~~v~~iM~~~--~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~--------~~~   72 (130)
T 3i8n_A            3 AQDVPVTQVMTPR--PVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS--------GQK   72 (130)
T ss_dssp             ----CCTTTSCCB--CCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT--------TTS
T ss_pred             cCcCCHhhCCCcH--HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC--------CcC
Confidence            4557899999965  567799999999999999999999999999873379999999999999876532        245


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      ++.+    +|.  +++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus        73 ~v~~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           73 QLGA----VMR--PIQVVLNNTALPKVFDQMMTHRLQLALVVDE-YGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             BHHH----HSE--ECCEEETTSCHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHHHT
T ss_pred             CHHH----Hhc--CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC-CCCEEEEEEHHHHHHHHcC
Confidence            7788    573  6789999999999999999999999999998 8999999999999998754

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.78  E-value=3.5e-18  Score=137.16  Aligned_cols=121  Identities=26%  Similarity=0.439  Sum_probs=107.6

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      .+|+++|.    +++.++++++++.++++.|.+++.+++||+|+ +|+++|+|+.+|+++.+....          .++.
T Consensus         1 ~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~~----------~~v~   65 (122)
T 3kpb_A            1 TLVKDILS----KPPITAHSNISIMEAAKILIKHNINHLPIVDE-HGKLVGIITSWDIAKALAQNK----------KTIE   65 (122)
T ss_dssp             CBHHHHCC----SCCCCEETTSBHHHHHHHHHHHTCSCEEEECT-TSBEEEEECHHHHHHHHHTTC----------CBGG
T ss_pred             CchHHhhC----CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHHHHHHhcc----------cCHH
Confidence            36899999    55999999999999999999999999999997 489999999999999875532          3688


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      +    +|. ++++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+.
T Consensus        66 ~----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Givt~~dl~~~l~~~  121 (122)
T 3kpb_A           66 E----IMT-RNVITAHEDEPVDHVAIKMSKYNISGVPVVDD-YRRVVGIVTSEDISRLFGGK  121 (122)
T ss_dssp             G----TSB-SSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHC--
T ss_pred             H----Hhc-CCCeEECCCCCHHHHHHHHHHhCCCeEEEECC-CCCEEEEEeHHHHHHHhhcC
Confidence            8    586 78899999999999999999999999999998 89999999999999998764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.77  E-value=2.4e-18  Score=140.13  Aligned_cols=124  Identities=11%  Similarity=0.161  Sum_probs=106.9

Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCc
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~  280 (351)
                      ...+|+++|++.  .++.++++++++.+|++.|.+++++++||+|++.++++|+||.+|+++.+..          ...+
T Consensus         3 ~~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~----------~~~~   70 (129)
T 3jtf_A            3 AERTVADIMVPR--SRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE----------PALD   70 (129)
T ss_dssp             -CCBHHHHCEEG--GGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC----------TTSC
T ss_pred             CCCCHHHhCccH--HHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc----------CCcC
Confidence            457899999954  5588999999999999999999999999998733799999999999887642          2346


Q ss_pred             ccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      +.+    +|.  +++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||.+||++.+.+
T Consensus        71 v~~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           71 IRS----LVR--PAVFIPEVKRLNVLLREFRASRNHLAIVIDE-HGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             GGG----GCB--CCCEEETTCBHHHHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHHHH
T ss_pred             HHH----HhC--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence            788    574  5789999999999999999999999999998 8999999999999998753

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.77  E-value=1.5e-18  Score=142.75  Aligned_cols=126  Identities=12%  Similarity=0.204  Sum_probs=107.8

Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v  281 (351)
                      ..+|+++|++.  .++.++++++++.+|++.|.+++++++||+|++.++++|+||.+|+++.+.....       ...++
T Consensus         2 ~~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~-------~~~~v   72 (136)
T 3lfr_A            2 DLQVRDIMVPR--SQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADG-------DSDDV   72 (136)
T ss_dssp             -CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSG-------GGCCG
T ss_pred             CCChHhccccH--HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccC-------CCcCH
Confidence            36799999954  5589999999999999999999999999998732699999999999988753221       35678


Q ss_pred             cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .+    +|.  +++++.+++++.+++++|.+++++.+||+|+ +|+++|+||..||++.+.+
T Consensus        73 ~~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A           73 KK----LLR--PATFVPESKRLNVLLREFRANHNHMAIVIDE-YGGVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             GG----TCB--CCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHTTC--
T ss_pred             HH----HcC--CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence            88    584  4889999999999999999999999999998 8999999999999988764

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.77  E-value=1.7e-18  Score=140.54  Aligned_cols=125  Identities=12%  Similarity=0.232  Sum_probs=106.6

Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v  281 (351)
                      ..+|+++|++.  .++.++++++++.+|++.|.+++++++||+|++.|+++|+||.+|+++.+....        ...++
T Consensus         2 ~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~--------~~~~v   71 (127)
T 3nqr_A            2 DQRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA--------EAFSM   71 (127)
T ss_dssp             -CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC--------CCCCH
T ss_pred             CcCHHHhcccH--HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC--------CCCCH
Confidence            36789999943  448899999999999999999999999999873279999999999988774332        35577


Q ss_pred             cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .+    +|.  +++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus        72 ~~----~m~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           72 DK----VLR--TAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             HH----HCB--CCCEEETTCBHHHHHHHHHHTTCCEEEEECT-TSCEEEEEEHHHHHHHC--
T ss_pred             HH----HcC--CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence            88    574  4779999999999999999999999999998 8999999999999998753

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.76  E-value=7e-18  Score=144.50  Aligned_cols=127  Identities=11%  Similarity=0.145  Sum_probs=109.0

Q ss_pred             CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713          199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (351)
Q Consensus       199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~  278 (351)
                      .+...+|+++|++.  .+++++++++++.+|++.|.+++++++||+|++.++++|+||.+|+++.+..+         ..
T Consensus        38 ~l~~~~v~diM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~---------~~  106 (172)
T 3lhh_A           38 RLDERTISSLMVPR--SDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG---------ER  106 (172)
T ss_dssp             -----CTTTTSEEG--GGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT---------CC
T ss_pred             ccCCCCHHHhCccH--HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhc---------Cc
Confidence            36678999999954  55889999999999999999999999999987227999999999999987543         24


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .++.+    +|  ++++++.+++++.+++++|.+++++.+||+|+ +|+++|+||..||++.+.+
T Consensus       107 ~~v~~----im--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          107 LELVD----LV--KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE-YGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             CCGGG----GC--BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHT
T ss_pred             ccHHH----Hh--cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC-CCCEEEEeeHHHHHHHHhC
Confidence            57888    57  68889999999999999999999999999998 8999999999999998865

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.76  E-value=4.9e-18  Score=137.93  Aligned_cols=124  Identities=13%  Similarity=0.206  Sum_probs=109.8

Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCc
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~  280 (351)
                      ...+++++|.    +++.++++++++.+|++.|.+++++++||+|+  |+++|+||.+|+++.+.++..       ...+
T Consensus         3 ~s~~v~~~m~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~-------~~~~   69 (128)
T 3gby_A            3 ASVTFSYLAE----TDYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPT-------VKEK   69 (128)
T ss_dssp             TTCBGGGGCB----CCSCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCC-------TTCB
T ss_pred             cceEHHHhhc----CCcceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCc-------ccCc
Confidence            4578999999    55999999999999999999999999999987  599999999999987754321       2356


Q ss_pred             ccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      +.+    +|. ++++++.+++++.++++.|.+++.+++||+|+ +|+++|+||..||++.+.+
T Consensus        70 v~~----~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           70 LGE----ELL-ETVRSYRPGEQLFDNLISVAAAKCSVVPLADE-DGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             CCG----GGC-BCCCCBCTTSBGGGSHHHHHHCSSSEEEEECT-TCBEEEEEEHHHHHHHHHT
T ss_pred             HHH----Hcc-CCCcEECCCCCHHHHHHHHHhCCCcEEEEECC-CCCEEEEEEHHHHHHHHHh
Confidence            888    586 88899999999999999999999999999997 8999999999999998865

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.75  E-value=4.2e-18  Score=142.87  Aligned_cols=126  Identities=14%  Similarity=0.251  Sum_probs=110.5

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEE-cCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVv-d~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~  278 (351)
                      +...+|+++|++.  .++.++++++++.+|++.|.+++++++||+ ++++|+++|+||.+|+++.+...         ..
T Consensus        17 l~~~~v~~iM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~---------~~   85 (153)
T 3oco_A           17 MNDKVASDVMVDR--TSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID---------DK   85 (153)
T ss_dssp             HHHCBHHHHSEEG--GGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH---------TT
T ss_pred             cCCCEeeeEecch--hheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC---------CC
Confidence            4568999999952  358999999999999999999999999999 64237999999999999887543         14


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .++.+    +|  ++++++.+++++.++++.|.+++++.+||+|+ +|+++|+||..||++.+.+
T Consensus        86 ~~v~~----~m--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           86 AKIST----IM--RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE-YGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             SBGGG----TC--BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT-TSCEEEEECHHHHHHHHHC
T ss_pred             CcHHH----Hh--CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCCEEEEeeHHHHHHHHhc
Confidence            57888    57  58889999999999999999999999999998 8999999999999998875

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.75  E-value=1.3e-17  Score=135.93  Aligned_cols=123  Identities=24%  Similarity=0.407  Sum_probs=109.0

Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v  281 (351)
                      ..+++++|.    +++.++++++++.+|++.|.+++++++||+| + |+++|+||..|+++.+..+..       ...++
T Consensus         3 ~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~-------~~~~v   69 (133)
T 2ef7_A            3 EEIVKEYMK----TQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKS-------LETKA   69 (133)
T ss_dssp             CCBGGGTSB----CSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCC-------TTCBG
T ss_pred             cccHHHhcc----CCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCC-------cccCH
Confidence            468999999    5599999999999999999999999999999 4 699999999999988765432       34678


Q ss_pred             cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .+    +|. +++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus        70 ~~----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           70 EE----FMT-ASLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             GG----TSE-ECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred             HH----HcC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHHH
Confidence            88    576 78899999999999999999999999999997 7999999999999988754

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.75  E-value=1.4e-17  Score=138.83  Aligned_cols=132  Identities=19%  Similarity=0.329  Sum_probs=112.4

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      +...+|+++|++.  .++.++++++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.+...... ..+.....
T Consensus        12 l~~~~v~~im~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~-~~~~~~~~   87 (150)
T 3lqn_A           12 FQQIFVKDLMISS--EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAMILDGILGLERI-EFERLEEM   87 (150)
T ss_dssp             HHHCBHHHHSEEG--GGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHTBCSSSB-CGGGGGGC
T ss_pred             hhcCChhhcccCC--CceEEECCCCcHHHHHHHHHHcCCcEEEEECC-CCCEEEEEEHHHHHHHHHhhccc-chhHHhcC
Confidence            3457999999954  45889999999999999999999999999997 48999999999999988643321 12233567


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      ++.+    +|. ++++++.+++++.++++.|.++++  +||+|+ +|+++|+||..||++.+.+
T Consensus        88 ~v~~----~m~-~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~-~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           88 KVEQ----VMK-QDIPVLKLEDSFAKALEMTIDHPF--ICAVNE-DGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             BGGG----TCB-SSCCEEETTCBHHHHHHHHHHCSE--EEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             CHHH----Hhc-CCCceeCCCCCHHHHHHHHHhCCE--EEEECC-CCcEEEEEEHHHHHHHHHH
Confidence            8888    586 889999999999999999999986  999997 8999999999999998754

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.74  E-value=2e-17  Score=142.04  Aligned_cols=125  Identities=15%  Similarity=0.113  Sum_probs=108.3

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      +...+|+++|++.  .+++++++++++.+|++.|.+++++++||+|++.++++|+||.+|+++.+....         ..
T Consensus        33 l~~~~v~diM~~~--~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~---------~~  101 (173)
T 3ocm_A           33 LAERSIRSIMTPR--TDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG---------RV  101 (173)
T ss_dssp             HTTSCSTTTSEEG--GGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS---------SC
T ss_pred             cCCCCHHHhCCcH--HHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC---------cc
Confidence            6778999999854  568899999999999999999999999999873379999999999998875321         22


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      ++. +    +  +++++|++++++.+++++|.+++++.+||+|+ +|+++|+||..||++.+.+
T Consensus       102 ~v~-~----~--~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde-~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          102 RRN-R----L--RDPIIVHESIGILRLMDTLKRSRGQLVLVADE-FGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             CGG-G----S--BCCCEECGGGCHHHHHHHHHHSTTCCEEEECT-TCCEEEEECHHHHHHHHHC
T ss_pred             hhH-h----c--CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-CCCEEEEEeHHHHHHHHhC
Confidence            344 3    3  57789999999999999999999999999998 8999999999999999875

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.74  E-value=2.3e-17  Score=136.12  Aligned_cols=122  Identities=16%  Similarity=0.231  Sum_probs=107.8

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCC--CEEEEEeHHHHHHHhhcCCCCchhhhhccCc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP--DIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g--~liGiIt~~dil~~l~~~~~~~~l~~l~~~~  280 (351)
                      .+++++|.    +++.++++++++.+|++.|.+++++++||+|++ +  +++|+||.+|+++.+..+..       ...+
T Consensus         5 ~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~-------~~~~   72 (141)
T 2rih_A            5 IRTSELLK----RPPVSLPETATIREVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLD-------LDGP   72 (141)
T ss_dssp             CBGGGGCC----SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCC-------TTSB
T ss_pred             eEHHHHhc----CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCC-------CCCC
Confidence            67899999    569999999999999999999999999999984 7  89999999999998765422       3567


Q ss_pred             ccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      +.+    +|. +++++++++ ++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+..
T Consensus        73 v~~----~m~-~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A           73 AMP----IAN-SPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             SGG----GCB-CCCEEETTS-BHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCHHH
T ss_pred             HHH----HcC-CCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-CCcEEEEEEHHHHHHHHHH
Confidence            888    586 889999999 9999999999999999999997 8999999999999865543

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.74  E-value=4.1e-17  Score=133.84  Aligned_cols=125  Identities=18%  Similarity=0.307  Sum_probs=109.1

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH-HhhcCCCCchhhhhcc
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-GLEGCKGRDWFDIIAS  278 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~-~l~~~~~~~~l~~l~~  278 (351)
                      +...+++++|.    +++.++++++++.+|++.|.+++++.+||+|+ +|+++|+||..|+++ .+..+.       ...
T Consensus         4 l~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~-------~~~   71 (138)
T 2yzi_A            4 DMKAPIKVYMT----KKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVIVPGL-------PYD   71 (138)
T ss_dssp             CTTSBGGGTCB----CCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTCC-------CTT
T ss_pred             hhhhhHHHHhc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHhcCC-------ccc
Confidence            55688999999    56999999999999999999999999999997 479999999999974 443221       135


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .++.+    +|. ++++++++++++.++++.|.+++.+.+ |+|+ +|+++|+||..||++.+.+
T Consensus        72 ~~v~~----~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~-~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           72 IPVER----IMT-RNLITANVNTPLGEVLRKMAEHRIKHI-LIEE-EGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             SBGGG----TCB-CSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             CCHHH----Hhh-CCCeEECCCCcHHHHHHHHHhcCCCEE-EECC-CCCEEEEEEHHHHHHHHHH
Confidence            67888    586 789999999999999999999999999 9997 7999999999999998765

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.74  E-value=2.8e-17  Score=132.28  Aligned_cols=122  Identities=18%  Similarity=0.211  Sum_probs=106.9

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~  283 (351)
                      +++++|.    +++.++++++++.+|++.|.+++.+++||+| + |+++|+||.+|+++.+.++..      ....++.+
T Consensus         2 ~v~~~m~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~------~~~~~v~~   69 (125)
T 1pbj_A            2 RVEDVMV----TDVDTIDITASLEDVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDD------LAEVKVWE   69 (125)
T ss_dssp             CHHHHCB----CSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCC------TTTSBHHH
T ss_pred             CHHHhcC----CCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCc------ccccCHHH
Confidence            6789998    5699999999999999999999999999999 4 799999999999988765421      13567888


Q ss_pred             cccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       284 L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                          +|. +++.++++++++.++++.|.+++.+.+||+|+  |+++|+||..||++.+.+.
T Consensus        70 ----~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l~~~  123 (125)
T 1pbj_A           70 ----VME-RDLVTISPRATIKEAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAKMAK  123 (125)
T ss_dssp             ----HCB-CGGGEECTTSCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHC--
T ss_pred             ----HcC-CCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHHHhc
Confidence                586 78999999999999999999999999999997  9999999999999988765

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.74  E-value=1.9e-17  Score=135.73  Aligned_cols=126  Identities=25%  Similarity=0.436  Sum_probs=109.7

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHH-HHHhhcCCCCchhhhhcc
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAV-VQGLEGCKGRDWFDIIAS  278 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~di-l~~l~~~~~~~~l~~l~~  278 (351)
                      +...+++++|+    +++.++++++++.++++.|.+++.+++||+|++ |+++|+||..|+ ++++.....       ..
T Consensus         5 l~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~-------~~   72 (138)
T 2p9m_A            5 LKNIKVKDVMT----KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKYT-------LE   72 (138)
T ss_dssp             CTTCBGGGTSB----CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCCC-------SS
T ss_pred             cccCCHHHhhc----CCceEECCCCcHHHHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhccc-------CC
Confidence            45688999998    558999999999999999999999999999974 799999999999 887754321       35


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcC-----CCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNN-----IGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~-----~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .++.+    +|. +++.++++++++.++++.|.+++     .+.+||+|+ +|+++|+||..||++.+.+
T Consensus        73 ~~v~~----~m~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           73 TTIGD----VMT-KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK-NNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             CBHHH----HSC-SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred             cCHHH----HhC-CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC-CCeEEEEEEHHHHHHHHHh
Confidence            67888    586 78899999999999999999999     999999997 7999999999999988753

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.73  E-value=4e-17  Score=132.98  Aligned_cols=126  Identities=13%  Similarity=0.151  Sum_probs=104.5

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA  120 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~  120 (351)
                      |.+.+++++|. +..+++++++++|+.+|++.|.++++.++||+|++.       ++++|+|+..|++..+..       
T Consensus         3 l~~~~v~~iM~-~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~~~Givt~~dl~~~~~~-------   67 (130)
T 3i8n_A            3 AQDVPVTQVMT-PRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQK-------DNIIGFVHRLELFKMQQS-------   67 (130)
T ss_dssp             ----CCTTTSC-CBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSST-------TCEEEECCHHHHHHHHHT-------
T ss_pred             cCcCCHhhCCC-cHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC-------CcEEEEEEHHHHHHHHhc-------
Confidence            67899999997 446788999999999999999999999999998752       289999999998843211       


Q ss_pred             hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713          121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF  200 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~  200 (351)
                                                                                                    ..
T Consensus        68 ------------------------------------------------------------------------------~~   69 (130)
T 3i8n_A           68 ------------------------------------------------------------------------------GS   69 (130)
T ss_dssp             ------------------------------------------------------------------------------TT
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          12


Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      ...++.++|+ .    +.++++++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+.
T Consensus        70 ~~~~v~~~m~-~----~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           70 GQKQLGAVMR-P----IQVVLNNTALPKVFDQMMTHRLQLALVVDE-YGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             TTSBHHHHSE-E----CCEEETTSCHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             CcCCHHHHhc-C----CcCcCCCCcHHHHHHHHHHcCCeEEEEEcC-CCCEEEEEEHHHHHHHHc
Confidence            2467899995 2    679999999999999999999999999998 489999999999998874

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.73  E-value=3.1e-17  Score=138.39  Aligned_cols=126  Identities=12%  Similarity=0.336  Sum_probs=109.5

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      +...+|+++|+    ++ +++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|+++.+.....      ....
T Consensus        14 l~~~~v~~im~----~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~------~~~~   81 (159)
T 3fv6_A           14 LKKLQVKDFQS----IP-VVIHENVSVYDAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQE------LTSV   81 (159)
T ss_dssp             HTTCBGGGSCB----CC-CEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSC------TTTC
T ss_pred             HhhCCHHHHcC----CC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCc------ccCc
Confidence            44579999998    53 499999999999999999999999999974 899999999999998754321      1456


Q ss_pred             cccccccCccCCC--CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCC---eEEEEEeHHHHHHHhcC
Q 018713          280 PISDLGLPFMSSD--EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQK---KIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       280 ~v~~L~~~~m~~~--~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g---~liGiIt~~DIl~~l~~  343 (351)
                      ++.+    +|. +  ++++|.+++++.+|++.|.+++++.+||+|+ +|   +++|+||..||++.+.+
T Consensus        82 ~v~~----~m~-~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           82 PVHI----IMT-RMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD-TDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             BGGG----TSE-ETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CSSSEEEEEEEEHHHHHHHHHH
T ss_pred             CHHH----HHc-CCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCcceeEEEEEEHHHHHHHHHH
Confidence            7888    586 6  8889999999999999999999999999998 77   99999999999998754

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.73  E-value=4.8e-17  Score=138.11  Aligned_cols=134  Identities=18%  Similarity=0.188  Sum_probs=114.4

Q ss_pred             CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhc
Q 018713          198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA  277 (351)
Q Consensus       198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~  277 (351)
                      ..+...+|+++|.+. ..++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.+.....     ...
T Consensus        19 ~~l~~~~v~dim~~~-~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~-----~~~   91 (165)
T 3fhm_A           19 FQGMATFVKDLLDRK-GRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-DGVVLGIFTERDLVKAVAGQGA-----ASL   91 (165)
T ss_dssp             CSSSSCBHHHHHHHH-CSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHGG-----GGG
T ss_pred             HhhhhcCHHHHhccC-CCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHhcCC-----ccc
Confidence            456678999999941 024889999999999999999999999999997 4899999999999988754310     124


Q ss_pred             cCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713          278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE  345 (351)
Q Consensus       278 ~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~  345 (351)
                      ..++.+    +|. +++++|.+++++.++++.|.+++.+.+||+|+  |+++|+||..||++.+.+..
T Consensus        92 ~~~v~~----~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~~~~  152 (165)
T 3fhm_A           92 QQSVSV----AMT-KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARIGEI  152 (165)
T ss_dssp             TSBGGG----TSB-SSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTTCC-
T ss_pred             cCCHHH----Hhc-CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHHH
Confidence            568888    586 88999999999999999999999999999997  99999999999999986643

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.73  E-value=2.1e-17  Score=137.37  Aligned_cols=134  Identities=16%  Similarity=0.244  Sum_probs=108.8

Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchh-------h
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF-------D  274 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l-------~  274 (351)
                      ..+|+++|++.  .++.++++++++.+|++.|.+++++++||+|+ +++++|+||..|+++.+........+       .
T Consensus         4 ~~~v~~im~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~   80 (152)
T 4gqw_A            4 VYTVGEFMTKK--EDLHVVKPTTTVDEALELLVENRITGFPVIDE-DWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS   80 (152)
T ss_dssp             CSBGGGTSEES--TTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred             eEEhhhccCCC--CCCeEECCCCcHHHHHHHHHHcCCceEEEEeC-CCeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence            46899999953  36999999999999999999999999999998 48999999999998764322111111       1


Q ss_pred             hhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       275 ~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      .....++.+    +|. ++++++++++++.++++.|.+++.+.+||+|+ +|+++|+||.+||++.+.+.
T Consensus        81 ~~~~~~v~~----~m~-~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dil~~~~~~  144 (152)
T 4gqw_A           81 KTNGKLVGD----LMT-PAPLVVEEKTNLEDAAKILLETKYRRLPVVDS-DGKLVGIITRGNVVRAALQI  144 (152)
T ss_dssp             ---CCBHHH----HSE-ESCCCEESSSBHHHHHHHHHHSSCCEEEEECT-TSBEEEEEEHHHHHHHHHC-
T ss_pred             HhccccHHH----hcC-CCceEECCCCcHHHHHHHHHHCCCCEEEEECC-CCcEEEEEEHHHHHHHHHhc
Confidence            123467788    586 77889999999999999999999999999997 89999999999999998764

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.72  E-value=1.9e-17  Score=139.43  Aligned_cols=121  Identities=11%  Similarity=0.173  Sum_probs=105.8

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      +...+|+++|++.  .++.++++++++.+|++.|.+++++++||+|++.++++|+||.+|+++.+..+         ...
T Consensus        35 l~~~~v~diM~~~--~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~---------~~~  103 (156)
T 3oi8_A           35 FSDLEVRDAMITR--SRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP---------EQF  103 (156)
T ss_dssp             HTTCBGGGTCEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG---------GGC
T ss_pred             cCCCCHhheeeeH--HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC---------Ccc
Confidence            6678999999953  45899999999999999999999999999997424999999999998876432         245


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR  338 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl  338 (351)
                      ++.+    +|.  +++++++++++.++++.|.+++.+.+||+|+ +|+++|+||..||+
T Consensus       104 ~v~~----im~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~g~~~Givt~~Dil  155 (156)
T 3oi8_A          104 HLKS----ILR--PAVFVPEGKSLTALLKEFREQRNHMAIVIDE-YGGTSGLVTFEDII  155 (156)
T ss_dssp             CHHH----HCB--CCCEEETTSBHHHHHHHHHHTTCCEEEEECT-TSSEEEEEEHHHHC
T ss_pred             cHHH----HcC--CCEEECCCCCHHHHHHHHHhcCCeEEEEECC-CCCEEEEEEHHHhc
Confidence            6788    574  4889999999999999999999999999998 89999999999986

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.72  E-value=3.1e-17  Score=133.77  Aligned_cols=126  Identities=21%  Similarity=0.366  Sum_probs=106.7

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH-HHhhcCCCCchhhhhcc
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV-QGLEGCKGRDWFDIIAS  278 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil-~~l~~~~~~~~l~~l~~  278 (351)
                      +...+++++|.    +++.++++++++.++++.|.+++++++||+|+ +|+++|+||..|++ +++..+..      ...
T Consensus         5 ~~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~------~~~   73 (133)
T 1y5h_A            5 FTMTTARDIMN----AGVTCVGEHETLTAAAQYMREHDIGALPICGD-DDRLHGMLTDRDIVIKGLAAGLD------PNT   73 (133)
T ss_dssp             ---CCHHHHSE----ETCCCEETTSBHHHHHHHHHHHTCSEEEEECG-GGBEEEEEEHHHHHHTTGGGTCC------TTT
T ss_pred             hhhcCHHHHhc----CCceEeCCCCCHHHHHHHHHHhCCCeEEEECC-CCeEEEEEeHHHHHHHHHhcCCC------ccc
Confidence            34468999999    45899999999999999999999999999987 47999999999998 45544321      134


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .++.+    +|. ++++++++++++.++++.|.+++.+.+||+|+  |+++|+||..||++.+.+
T Consensus        74 ~~v~~----~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           74 ATAGE----LAR-DSIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             SBHHH----HHT-TCCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTCC-
T ss_pred             cCHHH----Hhc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence            67888    586 78899999999999999999999999999997  899999999999988754

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.71  E-value=9.8e-17  Score=141.61  Aligned_cols=121  Identities=12%  Similarity=0.286  Sum_probs=108.3

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhC---CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhh
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY---RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII  276 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~---~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l  276 (351)
                      +...+++++|+    .+++++++++++.+|++.|.++   +++.+||+|+ +++++|+||.+|++...            
T Consensus        51 ~~~~~v~~iM~----~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~~------------  113 (205)
T 3kxr_A           51 YSENEIGRYTD----HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE-ADKYLGTVRRYDIFKHE------------  113 (205)
T ss_dssp             SCTTCGGGGCB----CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT-TCBEEEEEEHHHHTTSC------------
T ss_pred             CCcchHHhhcc----CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC-CCeEEEEEEHHHHHhCC------------
Confidence            77889999999    5599999999999999999987   8999999998 48999999999986431            


Q ss_pred             ccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          277 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       277 ~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      ...++++    +|. +++++|++++++.++++.|.+++++.+||||+ +|+++|+||..||+..+.+
T Consensus       114 ~~~~v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~-~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          114 PHEPLIS----LLS-EDSRALTANTTLLDAAEAIEHSREIELPVIDD-AGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             TTSBGGG----GCC-SSCCCEETTSCHHHHHHHHHTSSCSEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred             CcchHHH----Hhc-CCCeEECCCCCHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHH
Confidence            3457888    586 78999999999999999999999999999998 8999999999999988754

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.71  E-value=1.4e-16  Score=132.64  Aligned_cols=127  Identities=13%  Similarity=0.206  Sum_probs=108.3

Q ss_pred             HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713           40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA  119 (351)
Q Consensus        40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~  119 (351)
                      .|...+++++|. +..+++++++++|+.+|++.|.++++.++||+|++.       ++++|+|+..|++..+...     
T Consensus        19 ~l~~~~v~diM~-~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~lvGivt~~dl~~~~~~~-----   85 (148)
T 3lv9_A           19 EFEEKKIREIMV-PRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNK-------DDILGFVHIRDLYNQKINE-----   85 (148)
T ss_dssp             GGGTCBGGGTSE-ETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSST-------TSEEEEEEHHHHHHHHHHH-----
T ss_pred             ccCCCCHHHccc-cHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCC-------CcEEEEEEHHHHHHHHhcC-----
Confidence            367899999997 334889999999999999999999999999998752       2899999999998543111     


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                                                                                                    . 
T Consensus        86 ------------------------------------------------------------------------------~-   86 (148)
T 3lv9_A           86 ------------------------------------------------------------------------------N-   86 (148)
T ss_dssp             ------------------------------------------------------------------------------S-
T ss_pred             ------------------------------------------------------------------------------C-
Confidence                                                                                          1 


Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                        ..++.++| ..    +.++++++++.++++.|.+++++++||+|+ +|+++|+||..|+++.+..
T Consensus        87 --~~~v~~~m-~~----~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           87 --KIELEEIL-RD----IIYISENLTIDKALERIRKEKLQLAIVVDE-YGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             --CCCGGGTC-BC----CEEEETTSBHHHHHHHHHHHTCSEEEEECT-TSSEEEEEEHHHHHHHHHH
T ss_pred             --CccHHHhc-CC----CeEECCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence              46788899 44    789999999999999999999999999998 4899999999999998854

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.71  E-value=2.3e-17  Score=139.34  Aligned_cols=128  Identities=16%  Similarity=0.272  Sum_probs=105.7

Q ss_pred             CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      .++.++|. |..+++++++++|+.+|++.|.+++++++||+|+++        +++|+|+..|++.++.......     
T Consensus        15 ~~~~~iM~-P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~--------~lvGiit~~Di~~~~~~~~~~~-----   80 (156)
T 3k6e_A           15 GQEETFLT-PAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEK--------QFVGTIGLRDIMAYQMEHDLSQ-----   80 (156)
T ss_dssp             TTGGGGEE-ETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-C--------BEEEEEEHHHHHHHHHHHTCCH-----
T ss_pred             ccHHHhCc-chhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCC--------cEEEEEEecchhhhhhhccccc-----
Confidence            46778885 678999999999999999999999999999998653        8999999999997654331000     


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                                ......
T Consensus        81 --------------------------------------------------------------------------~~~~~~   86 (156)
T 3k6e_A           81 --------------------------------------------------------------------------EIMADT   86 (156)
T ss_dssp             --------------------------------------------------------------------------HHHTTS
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      012346


Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      +|.++|.    +++.++++++++.+|++.|.+++  .+||+|+ +|+++|+||++|+++.+..
T Consensus        87 ~v~~im~----~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~-~g~l~GiiT~~Dil~~~~~  142 (156)
T 3k6e_A           87 DIVHMTK----TDVAVVSPDFTITEVLHKLVDES--FLPVVDA-EGIFQGIITRKSILKAVNA  142 (156)
T ss_dssp             BGGGTCB----CSCCCBCTTCCHHHHHHHTTTSS--EEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred             CHHHhhc----CCceecccccHHHHHHHHHHHcC--CeEEEec-CCEEEEEEEHHHHHHHHHH
Confidence            8999999    66999999999999999998765  4999998 4899999999999998843

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.71  E-value=1.9e-16  Score=129.45  Aligned_cols=128  Identities=13%  Similarity=0.264  Sum_probs=106.4

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      .+|+++|++. .+++.++++++++.+|++.|.+++++++||+| + |+++|+||..|+++.+.... .    .....++.
T Consensus         6 ~~v~~im~~~-~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~-~----~~~~~~v~   77 (135)
T 2rc3_A            6 KTVKHLLQEK-GHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLD-K----PVKDTQVK   77 (135)
T ss_dssp             CBHHHHHHHH-CCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSS-S----CGGGSBGG
T ss_pred             eeHHHHHhcC-CCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcC-C----CcccCCHH
Confidence            3799999821 02388999999999999999999999999998 3 69999999999987543221 1    01456788


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE  345 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~  345 (351)
                      +    +|. ++++++++++++.++++.|.+++.+.+||+|+  |+++|+||..||++.+.+..
T Consensus        78 ~----~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--g~~~Giit~~dll~~~~~~~  133 (135)
T 2rc3_A           78 E----IMT-RQVAYVDLNNTNEDCMALITEMRVRHLPVLDD--GKVIGLLSIGDLVKDAISQH  133 (135)
T ss_dssp             G----TSB-CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHC--
T ss_pred             H----hcc-CCCeEECCCCcHHHHHHHHHHhCCCEEEEEeC--CEEEEEEEHHHHHHHHHhcc
Confidence            8    586 78899999999999999999999999999995  89999999999999886653

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.71  E-value=9.5e-17  Score=133.83  Aligned_cols=121  Identities=19%  Similarity=0.303  Sum_probs=106.2

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      .+|+++|.+.  .++.++++++++.+|++.|.+++++++||+|++ |+++|+||..|+++.+..+..      ....++.
T Consensus        28 ~~v~dim~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~------~~~~~v~   98 (149)
T 3k2v_A           28 LRVNDIMHTG--DEIPHVGLQATLRDALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVD------MRDASIA   98 (149)
T ss_dssp             SBGGGTSBCG--GGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSC------CTTCBHH
T ss_pred             cCHHHHhcCC--CCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCC------cccCcHH
Confidence            6899999941  259999999999999999999999999999974 899999999999998865432      1456788


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                      +    +|. +++++|++++++.++++.|.+++.+.+||+|+  ++++|+||..||++
T Consensus        99 ~----~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~Giit~~dil~  148 (149)
T 3k2v_A           99 D----VMT-RGGIRIRPGTLAVDALNLMQSRHITCVLVADG--DHLLGVVHMHDLLR  148 (149)
T ss_dssp             H----HSE-ESCCEECTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHTC
T ss_pred             H----HcC-CCCeEECCCCCHHHHHHHHHHcCCCEEEEecC--CEEEEEEEHHHhhc
Confidence            8    586 78899999999999999999999999999998  49999999999874

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.71  E-value=1.3e-16  Score=133.71  Aligned_cols=133  Identities=14%  Similarity=0.283  Sum_probs=110.4

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      +...+|+++|.+.  .++.++++++++.+|++.|.+++++++||+|+ +|+++|+||..|+++.+...... ........
T Consensus         8 l~~~~v~~im~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~-~~~~~~~~   83 (157)
T 2emq_A            8 FMQMTVKPFLIPA--DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-SYKLHGLISMTMMMDAILGLERI-EFERLETM   83 (157)
T ss_dssp             --CCBSTTTCEEG--GGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT-TCCEEEEEEHHHHHHHSBCSSSB-CGGGGGTC
T ss_pred             HhhCcHHhhccCC--ccceEECCCCcHHHHHHHHHHCCceEEEEEcC-CCCEEEEeeHHHHHHHHhccccc-chHHhcCC
Confidence            5568999999852  25889999999999999999999999999997 48999999999999887543211 11223466


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      ++.+    +|. ++++++++++++.++++.|.++++  +||+|+ +|+++|+||..||++.+.+.
T Consensus        84 ~v~~----~m~-~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~-~g~~~Giit~~dil~~~~~~  140 (157)
T 2emq_A           84 KVEE----VMN-RNIPRLRLDDSLMKAVGLIVNHPF--VCVEND-DGYFAGIFTRREVLKQLNKQ  140 (157)
T ss_dssp             BGGG----TCB-CCCCEEETTSBHHHHHHHHHHSSE--EEEECS-SSSEEEEEEHHHHHHHHHHT
T ss_pred             cHHH----HhC-CCCceecCCCcHHHHHHHHhhCCE--EEEEcC-CCeEEEEEEHHHHHHHHHHH
Confidence            7888    586 789999999999999999999987  999997 89999999999999887543

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.71  E-value=3.1e-17  Score=133.84  Aligned_cols=126  Identities=10%  Similarity=0.153  Sum_probs=103.7

Q ss_pred             CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      ++++++|. +.++++++++++|+.+|++.|.++++.++||++++.       ++++|+|+..|++.++...         
T Consensus         2 ~~v~~iM~-~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~-------~~lvGivt~~dl~~~~~~~---------   64 (130)
T 3hf7_A            2 VSVNDIMV-PRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSL-------DDAISMLRVREAYRLMTEK---------   64 (130)
T ss_dssp             CBHHHHSE-EGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSG-------GGEEEEEEHHHHHHHHTSS---------
T ss_pred             cCHHHhCc-cHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCC-------CcEEEEEEHHHHHHHHhcc---------
Confidence            56778885 335789999999999999999999999999997542       3899999999998542110         


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                                ......
T Consensus        65 --------------------------------------------------------------------------~~~~~~   70 (130)
T 3hf7_A           65 --------------------------------------------------------------------------KEFTKE   70 (130)
T ss_dssp             --------------------------------------------------------------------------SCCCHH
T ss_pred             --------------------------------------------------------------------------Cccchh
Confidence                                                                                      112335


Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ++.++|.     ++.++++++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.+..
T Consensus        71 ~v~~~m~-----~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           71 IMLRAAD-----EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             HHHHHSB-----CCCEEETTCBHHHHHHHHHHHCCCEEEEECT-TSCEEEEEEHHHHHHHHHC
T ss_pred             hHHHhcc-----CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC-CCCEEEEeeHHHHHHHHhC
Confidence            6888884     3678999999999999999999999999998 4899999999999998853

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.70  E-value=9.5e-17  Score=135.40  Aligned_cols=134  Identities=14%  Similarity=0.215  Sum_probs=113.6

Q ss_pred             HHHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHh
Q 018713           35 ETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET  114 (351)
Q Consensus        35 ~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~  114 (351)
                      ..+...|..+++.++|.   + ++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..||+.+++..
T Consensus         8 ~~l~~~l~~~~v~~im~---~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~   75 (159)
T 3fv6_A            8 QLLADKLKKLQVKDFQS---I-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDA--------VLVGVLSRKDLLRASIGQ   75 (159)
T ss_dssp             HHHHHHHTTCBGGGSCB---C-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTS--------CEEEEEEHHHHHHHHTSC
T ss_pred             HHHHHHHhhCCHHHHcC---C-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCC--------cEEEEEeHHHHHHHhhcc
Confidence            45677889999999996   3 45999999999999999999999999999653        899999999998543111


Q ss_pred             hHHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHh
Q 018713          115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVI  194 (351)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l  194 (351)
                                                                                                      
T Consensus        76 --------------------------------------------------------------------------------   75 (159)
T 3fv6_A           76 --------------------------------------------------------------------------------   75 (159)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCC---CEEEEEeHHHHHHHhhc
Q 018713          195 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP---DIKNYITQSAVVQGLEG  266 (351)
Q Consensus       195 ~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g---~liGiIt~~dil~~l~~  266 (351)
                         ......++.++|.+.  .++.++.+++++.+|++.|.+++++++||+|++ |   +++|+||.+||++++.+
T Consensus        76 ---~~~~~~~v~~~m~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           76 ---QELTSVPVHIIMTRM--PNITVCRREDYVMDIAKHLIEKQIDALPVIKDT-DKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             ---SCTTTCBGGGTSEET--TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEEC-SSSEEEEEEEEHHHHHHHHHH
T ss_pred             ---CcccCcCHHHHHcCC--CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCC-CcceeEEEEEEHHHHHHHHHH
Confidence               123457899999942  258999999999999999999999999999984 7   89999999999998854

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.70  E-value=1.1e-16  Score=135.34  Aligned_cols=130  Identities=17%  Similarity=0.296  Sum_probs=107.9

Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch--hhhhccC
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--FDIIASQ  279 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~--l~~l~~~  279 (351)
                      ..+|+++|.    +++.++.+++++.+|++.|.+++++.+||+|+ +|+++|+||..|+++++........  .......
T Consensus         4 ~~~v~dim~----~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~   78 (160)
T 2o16_A            4 MIKVEDMMT----RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFET   78 (160)
T ss_dssp             CCBGGGTSE----ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC---------CCC
T ss_pred             cCcHHHHhc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHhhcccccccchhccc
Confidence            468999999    45899999999999999999999999999997 4899999999999988753210000  0112356


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      ++.+    +|. +++++|++++++.+|++.|.+++.+.+||+|+  |+++|+||..||++.+.+
T Consensus        79 ~v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           79 PLFE----VMH-TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             BHHH----HSC-SCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHH
T ss_pred             CHHH----Hhc-CCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence            7888    586 88999999999999999999999999999997  999999999999987643

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.70  E-value=1.6e-16  Score=133.76  Aligned_cols=132  Identities=17%  Similarity=0.290  Sum_probs=111.0

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      +...+|+++|.+.  .++.++.+++++.+|++.|.+++++++||+|++ |+++|+||..|+++.+...... ........
T Consensus        11 l~~~~v~~im~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~-~~~~~~~~   86 (159)
T 1yav_A           11 LLEATVGQFMIEA--DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERI-EFEKLDQI   86 (159)
T ss_dssp             CTTCBHHHHSEEG--GGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSB-CGGGTTTS
T ss_pred             HhHhhHHHHhCCc--cceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhccc-chhhhccC
Confidence            5568999999951  258999999999999999999999999999984 7999999999999988653211 11223466


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      ++.+    +|. ++++++.+++++.++++.|.++++  +||+|+ +|+++|+||..||++.+.+
T Consensus        87 ~v~~----~m~-~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~-~g~~vGiit~~dil~~~~~  142 (159)
T 1yav_A           87 TVEE----VML-TDIPRLHINDPIMKGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELNK  142 (159)
T ss_dssp             BHHH----HSB-CSCCEEETTSBHHHHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             CHHH----hcC-CCCceEcCCCCHHHHHHHHHhCCE--EEEEeC-CCeEEEEEEHHHHHHHHHH
Confidence            7888    586 788999999999999999998876  999997 7999999999999988754

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.70  E-value=7.3e-17  Score=143.14  Aligned_cols=159  Identities=13%  Similarity=0.146  Sum_probs=100.9

Q ss_pred             ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713           45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV  124 (351)
Q Consensus        45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~  124 (351)
                      .+.++|.   ++++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..|+..               
T Consensus        14 ~~~~~~~---~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~--------~l~Givt~~dl~~---------------   67 (213)
T 1vr9_A           14 KVKKWVT---QDFPMVEESATVRECLHRMRQYQTNECIVKDREG--------HFRGVVNKEDLLD---------------   67 (213)
T ss_dssp             BGGGGCB---SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTS--------BEEEEEEGGGGTT---------------
T ss_pred             CHHHhhc---CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCC--------EEEEEEEHHHHHh---------------
Confidence            3445554   7889999999999999999999999999998643        8999999877661               


Q ss_pred             ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713          125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~  204 (351)
                                                                                                .....+
T Consensus        68 --------------------------------------------------------------------------~~~~~~   73 (213)
T 1vr9_A           68 --------------------------------------------------------------------------LDLDSS   73 (213)
T ss_dssp             --------------------------------------------------------------------------SCTTSB
T ss_pred             --------------------------------------------------------------------------hcCCCc
Confidence                                                                                      012357


Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccccc
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL  284 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L  284 (351)
                      +.++|+    +++.++++++++.++++.|.+++++++||+|++ |+++|+||.+|+++.+.....           ..+ 
T Consensus        74 v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~Dil~~~~~~~~-----------~~~-  136 (213)
T 1vr9_A           74 VFNKVS----LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALIEALA-----------MDV-  136 (213)
T ss_dssp             SGGGCB----CTTCCEETTSBHHHHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHHHSCC---------------
T ss_pred             HHHHcc----CCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHHhc-----------CCC-
Confidence            899999    559999999999999999999999999999984 899999999999998754321           111 


Q ss_pred             ccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeC
Q 018713          285 GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG  323 (351)
Q Consensus       285 ~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~  323 (351)
                         .+..-.+.+.....++.++.+.|.+++++.++|++.
T Consensus       137 ---~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~  172 (213)
T 1vr9_A          137 ---PGIRFSVLLEDKPGELRKVVDALALSNINILSVITT  172 (213)
T ss_dssp             ---------------------------------------
T ss_pred             ---CcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEE
Confidence               111001111133346999999999999999998754

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.69  E-value=1.3e-16  Score=131.49  Aligned_cols=129  Identities=18%  Similarity=0.265  Sum_probs=106.2

Q ss_pred             CCcCchHh---hhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhh
Q 018713          200 FKSTTVRS---IIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII  276 (351)
Q Consensus       200 ~~~~~V~d---im~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l  276 (351)
                      +...++++   +|.    +++.++++++++.+|++.|.+++++++||+|++ |+++|+||..|+++.+..+..     ..
T Consensus         5 ~~~~~v~~~~~~~~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-----~~   74 (144)
T 2nyc_A            5 FLKIPIGDLNIITQ----DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIY-----ND   74 (144)
T ss_dssp             GGGSBGGGSSCCBC----SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC---------
T ss_pred             hhhcchhhcCCCCC----CCceEECCCCcHHHHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhccccc-----cc
Confidence            34467778   777    568999999999999999999999999999974 899999999999988754310     01


Q ss_pred             ccCcccccccCccCCC-----CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          277 ASQPISDLGLPFMSSD-----EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       277 ~~~~v~~L~~~~m~~~-----~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      ...++.+    +|...     +++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus        75 ~~~~v~~----~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           75 LSLSVGE----ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             CCSBHHH----HHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred             CCccHHH----HHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEHHHHHHHHHh
Confidence            3456777    46422     6889999999999999999999999999997 8999999999999998754

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.69  E-value=7.6e-17  Score=138.06  Aligned_cols=132  Identities=14%  Similarity=0.224  Sum_probs=107.1

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCC------------
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR------------  270 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~------------  270 (351)
                      .+|+++|++.  .++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++........            
T Consensus         4 ~~v~dim~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T 3sl7_A            4 YTVGDFMTPR--QNLHVVKPSTSVDDALELLVEKKVTGLPVIDD-NWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS   80 (180)
T ss_dssp             CBHHHHSEEG--GGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHTCC-------------------
T ss_pred             eeHHHhcCCC--CCceeeCCCCcHHHHHHHHHHcCCCeEEEECC-CCeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence            5789999952  25999999999999999999999999999998 48999999999998543111000            


Q ss_pred             --c-------hhhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713          271 --D-------WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (351)
Q Consensus       271 --~-------~l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l  341 (351)
                        .       .+......++.+    +|. +++++|++++++.+|+++|.+++++.+||+|+ +|+++|+||..||++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~----~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~~  154 (180)
T 3sl7_A           81 TWKTFNELQKLISKTYGKVVGD----LMT-PSPLVVRDSTNLEDAARLLLETKFRRLPVVDA-DGKLIGILTRGNVVRAA  154 (180)
T ss_dssp             CCCSHHHHHHHHHTTTTCBHHH----HSE-ESCCCEETTSBHHHHHHHHTTSTTCEEEEECT-TCBEEEEEEHHHHHHHH
T ss_pred             hhhhhHHHHHHHhccccccHHH----HhC-CCceEeCCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHH
Confidence              0       001123567778    586 77889999999999999999999999999997 89999999999999887


Q ss_pred             cC
Q 018713          342 LK  343 (351)
Q Consensus       342 ~~  343 (351)
                      .+
T Consensus       155 ~~  156 (180)
T 3sl7_A          155 LQ  156 (180)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.69  E-value=1.5e-16  Score=133.82  Aligned_cols=133  Identities=20%  Similarity=0.238  Sum_probs=109.9

Q ss_pred             CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCE-EEEEcCCCCCEEEEEeHHHHHHHhhcC-----CCCc
Q 018713          198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN-VPIIEPGTPDIKNYITQSAVVQGLEGC-----KGRD  271 (351)
Q Consensus       198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~-vpVvd~~~g~liGiIt~~dil~~l~~~-----~~~~  271 (351)
                      ..+...+|+++|+    +++.++++++++.+|++.|.+++++. +||+|+ + +++|+||..|+++++...     ....
T Consensus        11 ~~~~~~~v~~im~----~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-~-~~vGivt~~dl~~~~~~~~~~~~~~~~   84 (157)
T 1o50_A           11 HHMKVKDVCKLIS----LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-N-KLVGMIPVMHLLKVSGFHFFGFIPKEE   84 (157)
T ss_dssp             TTCBHHHHTTSSC----CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-T-EEEEEEEHHHHHHHHHHHHHCCCC---
T ss_pred             hhhccccHhhccc----CCCceECCCCCHHHHHHHHHhCCCCccEEEEEC-C-EEEEEEEHHHHHHHHhhhHHhhhccHH
Confidence            3456678999999    56999999999999999999999999 999997 4 999999999999875310     0000


Q ss_pred             h----hhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          272 W----FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       272 ~----l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .    .......++.+    +|. + ++++++++++.+|++.|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus        85 ~~~~~~~~~~~~~v~~----im~-~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           85 LIRSSMKRLIAKNASE----IML-D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             ----CCCCCSSCBHHH----HCB-C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHH----HcC-C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC-CCEEEEEEEHHHHHHHHHH
Confidence            0    01124567778    586 6 899999999999999999999999999997 7999999999999998764

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.69  E-value=2.3e-16  Score=136.29  Aligned_cols=125  Identities=14%  Similarity=0.265  Sum_probs=109.4

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      .+|+++|+    ++++++++++++.+|++.|.+++++++||+|++ |+++|+||.+|+++.+.....     .....++.
T Consensus         9 ~~v~~im~----~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~-----~~~~~~v~   78 (184)
T 1pvm_A            9 MRVEKIMN----SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNK-----KPDEVPIR   78 (184)
T ss_dssp             CBGGGTSB----TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCC-----CGGGSBGG
T ss_pred             cCHHHhcC----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhccc-----CcccCCHH
Confidence            78999999    569999999999999999999999999999874 799999999999988753211     01356788


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      +    +|. ++++++.+++++.+++++|.+++.+.+||+|+ +|+++|+||..||++.+.+
T Consensus        79 ~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           79 L----VMR-KPIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             G----TSB-SSCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTSCH
T ss_pred             H----HhC-CCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHHh
Confidence            8    586 78899999999999999999999999999998 8999999999999987654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.69  E-value=2.6e-16  Score=134.69  Aligned_cols=127  Identities=12%  Similarity=0.155  Sum_probs=105.4

Q ss_pred             HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713           40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA  119 (351)
Q Consensus        40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~  119 (351)
                      .|...++.++|. +.++++++++++|+.+|++.|.++++.++||+|++.       ++++|+|+..||+.++..      
T Consensus        38 ~l~~~~v~diM~-~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~-------~~lvGivt~~dl~~~~~~------  103 (172)
T 3lhh_A           38 RLDERTISSLMV-PRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNV-------DDMVGIISAKQLLSESIA------  103 (172)
T ss_dssp             -----CTTTTSE-EGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSST-------TSEEEEEEHHHHHHHHHT------
T ss_pred             ccCCCCHHHhCc-cHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC-------CeEEEEEEHHHHHHHHhh------
Confidence            467899999996 446789999999999999999999999999998751       289999999998843210      


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                                                                                                      
T Consensus       104 --------------------------------------------------------------------------------  103 (172)
T 3lhh_A          104 --------------------------------------------------------------------------------  103 (172)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ....++.++| +.    +.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+..
T Consensus       104 ~~~~~v~~im-~~----~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          104 GERLELVDLV-KN----CNFVPNSLSGMELLEHFRTTGSQMVFVVDE-YGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             TCCCCGGGGC-BC----CEEEETTCCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHT
T ss_pred             cCcccHHHHh-cC----CeEeCCCCCHHHHHHHHHHcCCeEEEEEeC-CCCEEEEeeHHHHHHHHhC
Confidence            1246789999 44    889999999999999999999999999998 4899999999999999864

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.67  E-value=6.3e-17  Score=131.24  Aligned_cols=124  Identities=12%  Similarity=0.197  Sum_probs=102.0

Q ss_pred             cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713           43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF  122 (351)
Q Consensus        43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~  122 (351)
                      +.+++++|. +.++++++++++|+.+|++.|.++++.++||+|++.       ++++|+|+..|++..+           
T Consensus         2 ~~~v~diM~-~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~~vGivt~~dl~~~~-----------   62 (127)
T 3nqr_A            2 DQRVRDIMI-PRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK-------DHIEGILMAKDLLPFM-----------   62 (127)
T ss_dssp             -CBHHHHSE-EGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSST-------TCEEEEEEGGGGGGGG-----------
T ss_pred             CcCHHHhcc-cHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCC-------CcEEEEEEHHHHHHHH-----------
Confidence            467788886 224588999999999999999999999999998752       2899999998877211           


Q ss_pred             ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713          123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS  202 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~  202 (351)
                                                                                              .  .....
T Consensus        63 ------------------------------------------------------------------------~--~~~~~   68 (127)
T 3nqr_A           63 ------------------------------------------------------------------------R--SDAEA   68 (127)
T ss_dssp             ------------------------------------------------------------------------S--TTCCC
T ss_pred             ------------------------------------------------------------------------h--ccCCC
Confidence                                                                                    0  11235


Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      .+++++|+    + +.++++++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+.
T Consensus        69 ~~v~~~m~----~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           69 FSMDKVLR----T-AVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             CCHHHHCB----C-CCEEETTCBHHHHHHHHHHTTCCEEEEECT-TSCEEEEEEHHHHHHHC-
T ss_pred             CCHHHHcC----C-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence            68899996    3 578999999999999999999999999998 489999999999998863

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.67  E-value=2.9e-16  Score=125.84  Aligned_cols=119  Identities=20%  Similarity=0.312  Sum_probs=102.3

Q ss_pred             ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713           45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV  124 (351)
Q Consensus        45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~  124 (351)
                      +++++|.   ++++++++++|+.+|++.|.++++..+||+|+++        +++|+|+..|++.++..           
T Consensus         2 ~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~G~vt~~dl~~~~~~-----------   59 (122)
T 3kpb_A            2 LVKDILS---KPPITAHSNISIMEAAKILIKHNINHLPIVDEHG--------KLVGIITSWDIAKALAQ-----------   59 (122)
T ss_dssp             BHHHHCC---SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTS--------BEEEEECHHHHHHHHHT-----------
T ss_pred             chHHhhC---CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCC--------CEEEEEEHHHHHHHHHh-----------
Confidence            5677786   5788999999999999999999999999999653        89999999998844211           


Q ss_pred             ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713          125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~  204 (351)
                                                                                                  ...+
T Consensus        60 ----------------------------------------------------------------------------~~~~   63 (122)
T 3kpb_A           60 ----------------------------------------------------------------------------NKKT   63 (122)
T ss_dssp             ----------------------------------------------------------------------------TCCB
T ss_pred             ----------------------------------------------------------------------------cccC
Confidence                                                                                        1237


Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      +.++|.    +++.++++++++.++++.|.+++.+++||+|+ +|+++|+||..|+++++.+
T Consensus        64 v~~~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           64 IEEIMT----RNVITAHEDEPVDHVAIKMSKYNISGVPVVDD-YRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             GGGTSB----SSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHC-
T ss_pred             HHHHhc----CCCeEECCCCCHHHHHHHHHHhCCCeEEEECC-CCCEEEEEeHHHHHHHhhc
Confidence            889998    55899999999999999999999999999998 4899999999999998854

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.67  E-value=5.6e-16  Score=130.57  Aligned_cols=131  Identities=16%  Similarity=0.216  Sum_probs=106.2

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~-~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~  278 (351)
                      ....+|+++|.    +++.++++++++.+|++.|.+++++++||+|+ ++|+++|+||..|+++.+...... .. ....
T Consensus        10 ~~~~~v~dim~----~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~-~~-~~~~   83 (164)
T 2pfi_A           10 SHHVRVEHFMN----HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS-RA-PGHQ   83 (164)
T ss_dssp             CCSCBHHHHCB----CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC---------CCC
T ss_pred             ccCCCHHHHcC----CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc-cC-Cccc
Confidence            45678999999    55999999999999999999999999999986 237999999999999887543210 00 0123


Q ss_pred             CcccccccCccCCCC------ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          279 QPISDLGLPFMSSDE------VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~------v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .++.+    +|. .+      ++++.+++++.++++.|.+++.+.+||+|+  |+++|+||..||++.+.+
T Consensus        84 ~~v~~----~m~-~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           84 QCLQD----ILA-RGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR--GRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             CBHHH----HHH-TTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHHHH
T ss_pred             chhhh----hhc-ccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence            45666    354 33      789999999999999999999999999995  999999999999988754

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.67  E-value=5.6e-16  Score=127.05  Aligned_cols=127  Identities=17%  Similarity=0.258  Sum_probs=107.7

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA  120 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~  120 (351)
                      |...++.++|.   ++++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..|++..++..      
T Consensus         4 l~~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~------   66 (138)
T 2yzi_A            4 DMKAPIKVYMT---KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDG--------NVVGFFTKSDIIRRVIVP------   66 (138)
T ss_dssp             CTTSBGGGTCB---CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS--------CEEEEEEHHHHHHHTTTT------
T ss_pred             hhhhhHHHHhc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC--------cEEEEEeHHHHHHHHHhc------
Confidence            56789999997   6889999999999999999999999999998643        899999999987321100      


Q ss_pred             hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713          121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF  200 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~  200 (351)
                                                                                                   ...
T Consensus        67 -----------------------------------------------------------------------------~~~   69 (138)
T 2yzi_A           67 -----------------------------------------------------------------------------GLP   69 (138)
T ss_dssp             -----------------------------------------------------------------------------CCC
T ss_pred             -----------------------------------------------------------------------------CCc
Confidence                                                                                         112


Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                      ...++.++|.    .++.++++++++.++++.|.+++++++ |+|+ +|+++|+||..|+++++...
T Consensus        70 ~~~~v~~~m~----~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~-~g~~~Giit~~dil~~~~~~  130 (138)
T 2yzi_A           70 YDIPVERIMT----RNLITANVNTPLGEVLRKMAEHRIKHI-LIEE-EGKIVGIFTLSDLLEASRRR  130 (138)
T ss_dssp             TTSBGGGTCB----CSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE-TTEEEEEEEHHHHHHHHHCC
T ss_pred             ccCCHHHHhh----CCCeEECCCCcHHHHHHHHHhcCCCEE-EECC-CCCEEEEEEHHHHHHHHHHH
Confidence            3468899998    559999999999999999999999999 9997 47999999999999998653

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.67  E-value=1.6e-16  Score=129.23  Aligned_cols=124  Identities=17%  Similarity=0.228  Sum_probs=103.1

Q ss_pred             ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713           42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA  121 (351)
Q Consensus        42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~  121 (351)
                      .+.+++++|. +..+++++++++|+.+|++.|.++++.++||+|++.       ++++|+|+..|++.++          
T Consensus         3 ~~~~v~diM~-~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~-------~~~~Givt~~dl~~~~----------   64 (129)
T 3jtf_A            3 AERTVADIMV-PRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDR-------DNIIGILLAKDLLRYM----------   64 (129)
T ss_dssp             -CCBHHHHCE-EGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSST-------TCEEEEEEGGGGGGGG----------
T ss_pred             CCCCHHHhCc-cHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-------CcEEEEEEHHHHHhHh----------
Confidence            4678888886 345788999999999999999999999999998742       2899999998877210          


Q ss_pred             hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713          122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK  201 (351)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~  201 (351)
                                                                                               .    ..
T Consensus        65 -------------------------------------------------------------------------~----~~   67 (129)
T 3jtf_A           65 -------------------------------------------------------------------------L----EP   67 (129)
T ss_dssp             -------------------------------------------------------------------------T----CT
T ss_pred             -------------------------------------------------------------------------c----cC
Confidence                                                                                     0    12


Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ..+++++|+    + +.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+|+++.+..
T Consensus        68 ~~~v~~~m~----~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           68 ALDIRSLVR----P-AVFIPEVKRLNVLLREFRASRNHLAIVIDE-HGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             TSCGGGGCB----C-CCEEETTCBHHHHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHHHH
T ss_pred             CcCHHHHhC----C-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence            356888886    3 679999999999999999999999999998 4899999999999998853

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.67  E-value=7.9e-16  Score=129.17  Aligned_cols=129  Identities=18%  Similarity=0.315  Sum_probs=109.2

Q ss_pred             CchHhhhhccC--CCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCc
Q 018713          203 TTVRSIIKSYR--WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  280 (351)
Q Consensus       203 ~~V~dim~~~~--~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~  280 (351)
                      .+|+++|.+.+  .+++.++++++++.+|++.|.+++++++||.+  +|+++|+||..|+++.+.....     .....+
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~-----~~~~~~   79 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQER-----SSKATR   79 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTC-----CSSSCB
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccC-----CccccC
Confidence            57999998541  03468999999999999999999999999965  3699999999999988754321     013567


Q ss_pred             ccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE  345 (351)
Q Consensus       281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~  345 (351)
                      +.+    +|. ++++++.+++++.+++++|.+++.+.+||+|+  |+++|+||..||++.+.+..
T Consensus        80 v~~----~m~-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~l~~~~  137 (157)
T 4fry_A           80 VEE----IMT-AKVRYVEPSQSTDECMALMTEHRMRHLPVLDG--GKLIGLISIGDLVKSVIADQ  137 (157)
T ss_dssp             HHH----HSB-SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTC
T ss_pred             HHH----HcC-CCCcEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHHH
Confidence            888    586 78899999999999999999999999999995  99999999999999987654

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.66  E-value=8e-16  Score=125.97  Aligned_cols=128  Identities=16%  Similarity=0.278  Sum_probs=107.4

Q ss_pred             HHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHH-HHHHHHhhHH
Q 018713           39 AAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAI-ILWVLETAEL  117 (351)
Q Consensus        39 ~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di-~~~~~~~~~~  117 (351)
                      +.|.+.++.++|.   ++++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..|+ +.++..    
T Consensus         3 ~~l~~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~----   67 (138)
T 2p9m_A            3 DTLKNIKVKDVMT---KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDEN--------KVIGIVTTTDIGYNLIRD----   67 (138)
T ss_dssp             --CTTCBGGGTSB---CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTC--------BEEEEEEHHHHHHHHTTT----
T ss_pred             cccccCCHHHhhc---CCceEECCCCcHHHHHHHHHHCCCcEEEEECCCC--------eEEEEEEHHHHHHHHHhh----
Confidence            4567899999996   5788999999999999999999999999998653        89999999998 632100    


Q ss_pred             HhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhc
Q 018713          118 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE  197 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~  197 (351)
                                                                                                      
T Consensus        68 --------------------------------------------------------------------------------   67 (138)
T 2p9m_A           68 --------------------------------------------------------------------------------   67 (138)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYR-----LRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~-----~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ......++.++|.    +++.++++++++.++++.|.+++     ++++||+|+ +|+++|+||..|+++++.+
T Consensus        68 ~~~~~~~v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           68 KYTLETTIGDVMT----KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK-NNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             CCCSSCBHHHHSC----SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred             cccCCcCHHHHhC----CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC-CCeEEEEEEHHHHHHHHHh
Confidence            1134568999998    55899999999999999999999     999999997 4799999999999988753

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.66  E-value=2e-16  Score=132.50  Aligned_cols=127  Identities=17%  Similarity=0.153  Sum_probs=108.0

Q ss_pred             HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceeccee-cCCCCCCCccccceeeEeeHHHHHHHHHHhhHHH
Q 018713           40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVK-IPDAPSSSDWKERYLGIVDYSAIILWVLETAELA  118 (351)
Q Consensus        40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVv-d~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~  118 (351)
                      .|.+.+++++|. +..+++++++++|+.+|++.|.++++.++||+ +++.       ++++|+|+..||+.++...    
T Consensus        16 ~l~~~~v~~iM~-~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~-------~~lvGivt~~dl~~~~~~~----   83 (153)
T 3oco_A           16 EMNDKVASDVMV-DRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDK-------DKIIGYAYNYDIVRQARID----   83 (153)
T ss_dssp             HHHHCBHHHHSE-EGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEE-------EEEEEEEEHHHHHHHHHHH----
T ss_pred             ccCCCEeeeEec-chhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCC-------CcEEEEEEHHHHHhHHhcC----
Confidence            457899999996 23478999999999999999999999999999 6532       3899999999998543211    


Q ss_pred             hhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcC
Q 018713          119 AAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEE  198 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~  198 (351)
                                                                                                      
T Consensus        84 --------------------------------------------------------------------------------   83 (153)
T 3oco_A           84 --------------------------------------------------------------------------------   83 (153)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                        ...++.++| +.    +.++.+++++.++++.|.+++++++||+|+ +|+++|+||..|+++.+..
T Consensus        84 --~~~~v~~~m-~~----~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           84 --DKAKISTIM-RD----IVSVPENMKVPDVMEEMSAHRVPMAIVIDE-YGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             --TTSBGGGTC-BC----CEEEETTSBHHHHHHHHHHTTCSCEEEECT-TSCEEEEECHHHHHHHHHC
T ss_pred             --CCCcHHHHh-CC----CeEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCCEEEEeeHHHHHHHHhc
Confidence              146788999 44    889999999999999999999999999998 4899999999999999864

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.66  E-value=9.6e-16  Score=131.86  Aligned_cols=137  Identities=10%  Similarity=0.195  Sum_probs=109.2

Q ss_pred             CCcCchHhhhhccCCCCcEEe--cCCCCHHHHHHHHHhCCCCEEEEE--cCCCCCEEEEEeHHHHHHHhhcCCCC--ch-
Q 018713          200 FKSTTVRSIIKSYRWAPFLPV--ATDDSMLSVLLLLSKYRLRNVPII--EPGTPDIKNYITQSAVVQGLEGCKGR--DW-  272 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v--~~~~sl~ea~~~m~~~~~~~vpVv--d~~~g~liGiIt~~dil~~l~~~~~~--~~-  272 (351)
                      ....+|+++|++....+++++  .+++++.+|++.|.+++++++||+  |+ +|+++|+||..|+++.+......  .. 
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~-~~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE-SQRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT-TCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC-CCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            456899999994311126788  999999999999999999999999  56 48999999999999887532100  00 


Q ss_pred             ---------------hhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHH
Q 018713          273 ---------------FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI  337 (351)
Q Consensus       273 ---------------l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DI  337 (351)
                                     .......++.+    +|. +++++|.+++++.+|++.|.+++.+.+||+|+  |+++|+||..||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~--g~~vGiit~~dl  159 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRN----ILD-LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN--GRLLGIITKKDV  159 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGG----GEE-SSCCEEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHH
T ss_pred             ccceeecccCCcccccccccCccHHH----hhC-cCCeEeCCCCCHHHHHHHHHhCCCcEEEEEEC--CEEEEEEEHHHH
Confidence                           00113456777    586 78999999999999999999999999999995  999999999999


Q ss_pred             HHHhcCc
Q 018713          338 RHLLLKP  344 (351)
Q Consensus       338 l~~l~~~  344 (351)
                      ++.+.+.
T Consensus       160 l~~l~~~  166 (185)
T 2j9l_A          160 LKHIAQM  166 (185)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9987643

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.66  E-value=1.5e-16  Score=130.74  Aligned_cols=126  Identities=15%  Similarity=0.183  Sum_probs=103.1

Q ss_pred             cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713           43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF  122 (351)
Q Consensus        43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~  122 (351)
                      +.++.++|. +.++++++++++|+.+|++.|.++++.++||+|++.       ++++|+|+..||+.++..         
T Consensus         2 ~~~v~~iM~-~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~-------~~~vGivt~~dl~~~~~~---------   64 (136)
T 3lfr_A            2 DLQVRDIMV-PRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESH-------DDVLGVLLAKDLLPLILK---------   64 (136)
T ss_dssp             -CBHHHHSE-EGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSST-------TCEEEEEEGGGGGGGGGS---------
T ss_pred             CCChHhccc-cHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCC-------CcEEEEEEHHHHHHHHHh---------
Confidence            467788886 345788999999999999999999999999998752       289999999888732100         


Q ss_pred             ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713          123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS  202 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~  202 (351)
                                                                                                 .....
T Consensus        65 ---------------------------------------------------------------------------~~~~~   69 (136)
T 3lfr_A           65 ---------------------------------------------------------------------------ADGDS   69 (136)
T ss_dssp             ---------------------------------------------------------------------------SSGGG
T ss_pred             ---------------------------------------------------------------------------ccCCC
Confidence                                                                                       11234


Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      .++.++|+    + +.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+..
T Consensus        70 ~~v~~~m~----~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A           70 DDVKKLLR----P-ATFVPESKRLNVLLREFRANHNHMAIVIDE-YGGVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             CCGGGTCB----C-CCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHTTC--
T ss_pred             cCHHHHcC----C-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHhC
Confidence            67899996    3 789999999999999999999999999998 4899999999999988754

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.66  E-value=3e-16  Score=127.32  Aligned_cols=124  Identities=15%  Similarity=0.175  Sum_probs=105.6

Q ss_pred             ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713           42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA  121 (351)
Q Consensus        42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~  121 (351)
                      .+++++++|.   +++.++++++++.+|++.|.++++.++||+|+ +        +++|+|+..|++..+          
T Consensus         3 ~s~~v~~~m~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~--------~~~Givt~~dl~~~~----------   60 (128)
T 3gby_A            3 ASVTFSYLAE---TDYPVFTLGGSTADAARRLAASGCACAPVLDG-E--------RYLGMVHLSRLLEGR----------   60 (128)
T ss_dssp             TTCBGGGGCB---CCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-T--------EEEEEEEHHHHHTTC----------
T ss_pred             cceEHHHhhc---CCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-C--------EEEEEEEHHHHHHHH----------
Confidence            4688999997   67889999999999999999999999999997 3        899999999988210          


Q ss_pred             hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713          122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK  201 (351)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~  201 (351)
                                                                                               .. ....
T Consensus        61 -------------------------------------------------------------------------~~-~~~~   66 (128)
T 3gby_A           61 -------------------------------------------------------------------------KG-WPTV   66 (128)
T ss_dssp             -------------------------------------------------------------------------SS-SCCT
T ss_pred             -------------------------------------------------------------------------hh-CCcc
Confidence                                                                                     00 1112


Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ..++.++|.    +++.++++++++.++++.|.+++.+++||+|+ +|+++|+||..|+++++.+
T Consensus        67 ~~~v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           67 KEKLGEELL----ETVRSYRPGEQLFDNLISVAAAKCSVVPLADE-DGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             TCBCCGGGC----BCCCCBCTTSBGGGSHHHHHHCSSSEEEEECT-TCBEEEEEEHHHHHHHHHT
T ss_pred             cCcHHHHcc----CCCcEECCCCCHHHHHHHHHhCCCcEEEEECC-CCCEEEEEEHHHHHHHHHh
Confidence            257899998    55889999999999999999999999999997 4899999999999998853

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.66  E-value=8.7e-16  Score=125.05  Aligned_cols=126  Identities=18%  Similarity=0.341  Sum_probs=107.2

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA  120 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~  120 (351)
                      |.+.+++++|.   ++++++++++|+.+|++.|.++++.++||+| ++        +++|+|+..|++.++...      
T Consensus         1 l~~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~--------~~~Givt~~dl~~~~~~~------   62 (133)
T 2ef7_A            1 MEEEIVKEYMK---TQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GN--------KPVGIITERDIVKAIGKG------   62 (133)
T ss_dssp             CCCCBGGGTSB---CSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TT--------EEEEEEEHHHHHHHHHTT------
T ss_pred             CCcccHHHhcc---CCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CC--------EEEEEEcHHHHHHHHhcC------
Confidence            35788999997   5788999999999999999999999999999 43        899999999988442111      


Q ss_pred             hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713          121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF  200 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~  200 (351)
                                                                                                    ..
T Consensus        63 ------------------------------------------------------------------------------~~   64 (133)
T 2ef7_A           63 ------------------------------------------------------------------------------KS   64 (133)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          12


Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                      ...++.++|.    +++.++++++++.++++.|.+++.+++||+|+ +|+++|+||..|+++++...
T Consensus        65 ~~~~v~~~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~~  126 (133)
T 2ef7_A           65 LETKAEEFMT----ASLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAIDDM  126 (133)
T ss_dssp             TTCBGGGTSE----ECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHH
T ss_pred             cccCHHHHcC----CCCEEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHHHH
Confidence            2467899998    45899999999999999999999999999997 48999999999999988543

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.65  E-value=1.2e-16  Score=133.12  Aligned_cols=135  Identities=16%  Similarity=0.209  Sum_probs=109.8

Q ss_pred             HHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHH
Q 018713           39 AAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA  118 (351)
Q Consensus        39 ~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~  118 (351)
                      ..|..+++.++|. +.++++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..||+.++...... 
T Consensus        10 ~~l~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~--------~~~Givt~~dl~~~~~~~~~~-   79 (150)
T 3lqn_A           10 DEFQQIFVKDLMI-SSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMY--------KLHGLISTAMILDGILGLERI-   79 (150)
T ss_dssp             HHHHHCBHHHHSE-EGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC--------BEEEEEEHHHHHHHTBCSSSB-
T ss_pred             HhhhcCChhhccc-CCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCC--------CEEEEEEHHHHHHHHHhhccc-
Confidence            4567899999996 235689999999999999999999999999998753        899999999998543211000 


Q ss_pred             hhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcC
Q 018713          119 AAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEE  198 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~  198 (351)
                                                                                          .         ..
T Consensus        80 --------------------------------------------------------------------~---------~~   82 (150)
T 3lqn_A           80 --------------------------------------------------------------------E---------FE   82 (150)
T ss_dssp             --------------------------------------------------------------------C---------GG
T ss_pred             --------------------------------------------------------------------c---------hh
Confidence                                                                                0         01


Q ss_pred             CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                      .....++.++|.    +++.++++++++.++++.|.++++  +||+|+ +|+++|+||..|+++++...
T Consensus        83 ~~~~~~v~~~m~----~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~-~g~~~Giit~~dil~~l~~~  144 (150)
T 3lqn_A           83 RLEEMKVEQVMK----QDIPVLKLEDSFAKALEMTIDHPF--ICAVNE-DGYFEGILTRRAILKLLNKK  144 (150)
T ss_dssp             GGGGCBGGGTCB----SSCCEEETTCBHHHHHHHHHHCSE--EEEECT-TCBEEEEEEHHHHHHHHHHH
T ss_pred             HHhcCCHHHHhc----CCCceeCCCCCHHHHHHHHHhCCE--EEEECC-CCcEEEEEEHHHHHHHHHHH
Confidence            123578999999    558999999999999999999886  999997 48999999999999998643

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.65  E-value=8.7e-16  Score=123.48  Aligned_cols=121  Identities=13%  Similarity=0.130  Sum_probs=102.6

Q ss_pred             ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713           45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV  124 (351)
Q Consensus        45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~  124 (351)
                      +++++|.   ++++++++++|+.+|++.|.++++..+||+| ++        +++|+|+..|++.++...          
T Consensus         2 ~v~~~m~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~--------~~~G~it~~dl~~~~~~~----------   59 (125)
T 1pbj_A            2 RVEDVMV---TDVDTIDITASLEDVLRNYVENAKGSSVVVK-EG--------VRVGIVTTWDVLEAIAEG----------   59 (125)
T ss_dssp             CHHHHCB---CSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TT--------EEEEEEEHHHHHHHHHHT----------
T ss_pred             CHHHhcC---CCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CC--------eeEEEEeHHHHHHHHhcC----------
Confidence            5667776   5788999999999999999999999999999 43        899999999988443211          


Q ss_pred             ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713          125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~  204 (351)
                                                                                               ......+
T Consensus        60 -------------------------------------------------------------------------~~~~~~~   66 (125)
T 1pbj_A           60 -------------------------------------------------------------------------DDLAEVK   66 (125)
T ss_dssp             -------------------------------------------------------------------------CCTTTSB
T ss_pred             -------------------------------------------------------------------------CcccccC
Confidence                                                                                     1134578


Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      +.++|.    +++.++++++++.++++.|.+++++++||+|+  |+++|+||.+|+++++..
T Consensus        67 v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           67 VWEVME----RDLVTISPRATIKEAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             HHHHCB----CGGGEECTTSCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHC-
T ss_pred             HHHHcC----CCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence            999998    45999999999999999999999999999986  599999999999998854

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.65  E-value=9e-16  Score=131.71  Aligned_cols=126  Identities=15%  Similarity=0.106  Sum_probs=105.9

Q ss_pred             HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713           40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA  119 (351)
Q Consensus        40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~  119 (351)
                      .|...++.++|. +.++++++++++|+.+|++.|.++++.++||+|++.+       +++|+|+..||+.++...     
T Consensus        32 ~l~~~~v~diM~-~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-------~lvGivt~~Dl~~~~~~~-----   98 (173)
T 3ocm_A           32 TLAERSIRSIMT-PRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLD-------EVVGIGRAKDLVADLITE-----   98 (173)
T ss_dssp             HHTTSCSTTTSE-EGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTT-------SEEEEEEHHHHHHHHHHH-----
T ss_pred             ccCCCCHHHhCC-cHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCC-------CEEEEEEHHHHHHHHhcC-----
Confidence            467899999996 3467899999999999999999999999999986522       899999999998543111     


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                                                                                                      
T Consensus        99 --------------------------------------------------------------------------------   98 (173)
T 3ocm_A           99 --------------------------------------------------------------------------------   98 (173)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                       ...++.  |.    +++.++++++++.++++.|.+++++.+||+|+ +|+++|+||..|+++.+..
T Consensus        99 -~~~~v~--~~----~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde-~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A           99 -GRVRRN--RL----RDPIIVHESIGILRLMDTLKRSRGQLVLVADE-FGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             -SSCCGG--GS----BCCCEECGGGCHHHHHHHHHHSTTCCEEEECT-TCCEEEEECHHHHHHHHHC
T ss_pred             -CcchhH--hc----CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-CCCEEEEEeHHHHHHHHhC
Confidence             124556  44    34789999999999999999999999999998 4899999999999999864

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.64  E-value=1.1e-15  Score=138.76  Aligned_cols=136  Identities=14%  Similarity=0.155  Sum_probs=106.3

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CCCEEEEEeHHHHHHHhhcCC---CC---c-
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCK---GR---D-  271 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~-~g~liGiIt~~dil~~l~~~~---~~---~-  271 (351)
                      ....+|+++|+    ++++++.+++++.+|.++|.+++++++||+|++ +++++|+||++||++++....   ..   . 
T Consensus        10 ~~~~~v~diMt----~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~   85 (250)
T 2d4z_A           10 KYNIQVGDIMV----RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAA   85 (250)
T ss_dssp             CSSCBTTSSSB----SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCC
T ss_pred             cCCCChHHhcC----CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhh
Confidence            45678999999    569999999999999999999999999999873 258999999999998764210   00   0 


Q ss_pred             -------------------------hhh----------------------------------------------------
Q 018713          272 -------------------------WFD----------------------------------------------------  274 (351)
Q Consensus       272 -------------------------~l~----------------------------------------------------  274 (351)
                                               +++                                                    
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (250)
T 2d4z_A           86 AEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVAS  165 (250)
T ss_dssp             CCBCCC--------------------------------------------------------------------------
T ss_pred             hcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCc
Confidence                                     000                                                    


Q ss_pred             ----------------hhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHH
Q 018713          275 ----------------IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR  338 (351)
Q Consensus       275 ----------------~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl  338 (351)
                                      .....++. |.-.+|+ +.+++|.++++|.++..+|...+++++||++.  |+|+|+||++||+
T Consensus       166 ~~~~~i~~~~~~~~~~~~l~~~Vd-l~~~~md-~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~--GrLVGIVTrkDl~  241 (250)
T 2d4z_A          166 RFEEMLTLEEIYRWEQREKNVVVN-FETCRID-QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM--GKLVGVVALAEIQ  241 (250)
T ss_dssp             -CCSCCBHHHHHHHHHHHTTCBCC-TTSSCEE-CCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHH
T ss_pred             ccccccChhhhhhHHHHhcCceec-ccccccc-CCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC--CEEEEEEEHHHHH
Confidence                            00111110 0001576 88899999999999999999999999999986  9999999999999


Q ss_pred             HHhcC
Q 018713          339 HLLLK  343 (351)
Q Consensus       339 ~~l~~  343 (351)
                      +++.+
T Consensus       242 kai~~  246 (250)
T 2d4z_A          242 AAIEG  246 (250)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            99864

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.64  E-value=6.8e-16  Score=128.16  Aligned_cols=142  Identities=18%  Similarity=0.211  Sum_probs=107.9

Q ss_pred             ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713           42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA  121 (351)
Q Consensus        42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~  121 (351)
                      ..++++++|. +..+++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..||+.++.....     
T Consensus         3 ~~~~v~~im~-~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~G~vt~~dl~~~~~~~~~-----   68 (152)
T 4gqw_A            3 GVYTVGEFMT-KKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDW--------KLVGLVSDYDLLALDSGDST-----   68 (152)
T ss_dssp             CCSBGGGTSE-ESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTC--------BEEEEEEHHHHTTCC----C-----
T ss_pred             ceEEhhhccC-CCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCC--------eEEEEEEHHHHHHhhcccCc-----
Confidence            4578999996 233789999999999999999999999999999753        89999999999843211100     


Q ss_pred             hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713          122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK  201 (351)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~  201 (351)
                                                                                       ...+...........
T Consensus        69 -----------------------------------------------------------------~~~~~~~~~~~~~~~   83 (152)
T 4gqw_A           69 -----------------------------------------------------------------WKTFNAVQKLLSKTN   83 (152)
T ss_dssp             -----------------------------------------------------------------CHHHHHHHTC-----
T ss_pred             -----------------------------------------------------------------ccchHHHHHHHHHhc
Confidence                                                                             000000000001234


Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                      ..++.++|.    +++.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++++.+.
T Consensus        84 ~~~v~~~m~----~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dil~~~~~~  144 (152)
T 4gqw_A           84 GKLVGDLMT----PAPLVVEEKTNLEDAAKILLETKYRRLPVVDS-DGKLVGIITRGNVVRAALQI  144 (152)
T ss_dssp             CCBHHHHSE----ESCCCEESSSBHHHHHHHHHHSSCCEEEEECT-TSBEEEEEEHHHHHHHHHC-
T ss_pred             cccHHHhcC----CCceEECCCCcHHHHHHHHHHCCCCEEEEECC-CCcEEEEEEHHHHHHHHHhc
Confidence            578999999    44889999999999999999999999999997 48999999999999998653

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.64  E-value=1.1e-15  Score=138.08  Aligned_cols=131  Identities=14%  Similarity=0.292  Sum_probs=101.7

Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhh-------
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD-------  274 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~-------  274 (351)
                      ..+|+++|+    +++.++++++++.+|++.|.+++++++||+|+ +|+++|+||..|+++.+........+.       
T Consensus         6 ~~~v~~im~----~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~   80 (245)
T 3l2b_A            6 KLKVEDLEM----DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-NNHLLGMLSTSNITATYMDIWDSNILAKSATSLD   80 (245)
T ss_dssp             CCBGGGSCC----BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHH
T ss_pred             cCcHHHhcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHH
Confidence            468999999    55999999999999999999999999999998 489999999999999875432110000       


Q ss_pred             h-------------------------------------------------------------------------------
Q 018713          275 I-------------------------------------------------------------------------------  275 (351)
Q Consensus       275 ~-------------------------------------------------------------------------------  275 (351)
                      .                                                                               
T Consensus        81 ~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a  160 (245)
T 3l2b_A           81 NILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELA  160 (245)
T ss_dssp             HHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHH
T ss_pred             HHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence            0                                                                               


Q ss_pred             ---------------------hccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeH
Q 018713          276 ---------------------IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSI  334 (351)
Q Consensus       276 ---------------------l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~  334 (351)
                                           ....++++    +|+++++.++++++++.+++++|.+++++++||+|+ +|+++|+||.
T Consensus       161 ~~~~~~~i~t~~d~~~~~~~~~~~~~v~~----im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~  235 (245)
T 3l2b_A          161 KKNNITVITTPHDSFTASRLIVQSLPVDY----VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE-NNKVVGSIAR  235 (245)
T ss_dssp             HHHTCEEEECSSCHHHHHHHGGGGSBHHH----HSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEEC
T ss_pred             HHcCCeEEEeCCChHHHHHHHhcCCceee----EecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC-CCeEEEEEEH
Confidence                                 01233445    573267889999999999999999999999999998 8999999999


Q ss_pred             HHHHHHhc
Q 018713          335 RDIRHLLL  342 (351)
Q Consensus       335 ~DIl~~l~  342 (351)
                      +|+++...
T Consensus       236 ~dll~~~~  243 (245)
T 3l2b_A          236 FHLISTHK  243 (245)
T ss_dssp             C-------
T ss_pred             HHhhchhh
Confidence            99998754

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.64  E-value=2.4e-15  Score=123.81  Aligned_cols=134  Identities=10%  Similarity=0.138  Sum_probs=104.6

Q ss_pred             ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713           42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA  121 (351)
Q Consensus        42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~  121 (351)
                      .+.++.+++....++++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..|++.++....      
T Consensus         6 ~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~~------   71 (144)
T 2nyc_A            6 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG--------YLINVYEAYDVLGLIKGGI------   71 (144)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC--------BEEEEEEHHHHHHHHHTC-------
T ss_pred             hhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCC--------cEEEEEcHHHHHHHhcccc------
Confidence            45677774332337889999999999999999999999999998653        8999999999985432110      


Q ss_pred             hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713          122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK  201 (351)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~  201 (351)
                                                                                                  ....
T Consensus        72 ----------------------------------------------------------------------------~~~~   75 (144)
T 2nyc_A           72 ----------------------------------------------------------------------------YNDL   75 (144)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             ----------------------------------------------------------------------------cccC
Confidence                                                                                        0123


Q ss_pred             cCchHhhhhccCC--CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          202 STTVRSIIKSYRW--APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       202 ~~~V~dim~~~~~--~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ..++.++|.+.+.  .++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+|+++++..
T Consensus        76 ~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           76 SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             CSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred             CccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEHHHHHHHHHh
Confidence            4678898874200  15889999999999999999999999999997 4899999999999998854

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.64  E-value=9.1e-16  Score=127.83  Aligned_cols=122  Identities=10%  Similarity=0.139  Sum_probs=103.3

Q ss_pred             cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713           43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF  122 (351)
Q Consensus        43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~  122 (351)
                      .++++++|. +.++++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..||+..+...        
T Consensus        27 ~~~v~dim~-~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~--------   89 (149)
T 3k2v_A           27 LLRVNDIMH-TGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDM--------NIIGIFTDGDLRRVFDTG--------   89 (149)
T ss_dssp             TSBGGGTSB-CGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTC--------BEEEEEEHHHHHHHHCSS--------
T ss_pred             ccCHHHHhc-CCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCC--------cEEEEecHHHHHHHHhcC--------
Confidence            369999996 222789999999999999999999999999999653        899999999998432110        


Q ss_pred             ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713          123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS  202 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~  202 (351)
                                                                                                 .....
T Consensus        90 ---------------------------------------------------------------------------~~~~~   94 (149)
T 3k2v_A           90 ---------------------------------------------------------------------------VDMRD   94 (149)
T ss_dssp             ---------------------------------------------------------------------------SCCTT
T ss_pred             ---------------------------------------------------------------------------CCccc
Confidence                                                                                       11345


Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  262 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~  262 (351)
                      .++.++|.    .++.++++++++.++++.|.+++++++||+|++  +++|+||.+|+++
T Consensus        95 ~~v~~~m~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~Giit~~dil~  148 (149)
T 3k2v_A           95 ASIADVMT----RGGIRIRPGTLAVDALNLMQSRHITCVLVADGD--HLLGVVHMHDLLR  148 (149)
T ss_dssp             CBHHHHSE----ESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT--EEEEEEEHHHHTC
T ss_pred             CcHHHHcC----CCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC--EEEEEEEHHHhhc
Confidence            78999999    458999999999999999999999999999974  9999999999864

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.64  E-value=1.9e-15  Score=126.98  Aligned_cols=140  Identities=12%  Similarity=0.103  Sum_probs=109.8

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCcee-cceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILS-APVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA  119 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~-~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~  119 (351)
                      +...++.++|.   ++++++++++|+.+|++.|.++++.. +||+|++         +++|+|+..||+.++....  . 
T Consensus        13 ~~~~~v~~im~---~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~---------~~vGivt~~dl~~~~~~~~--~-   77 (157)
T 1o50_A           13 MKVKDVCKLIS---LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN---------KLVGMIPVMHLLKVSGFHF--F-   77 (157)
T ss_dssp             CBHHHHTTSSC---CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT---------EEEEEEEHHHHHHHHHHHH--H-
T ss_pred             hccccHhhccc---CCCceECCCCCHHHHHHHHHhCCCCccEEEEECC---------EEEEEEEHHHHHHHHhhhH--H-
Confidence            45677889996   68999999999999999999999999 9999864         7999999999997654221  0 


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                      ..+                       .                                       ....+...   ...
T Consensus        78 ~~~-----------------------~---------------------------------------~~~~~~~~---~~~   92 (157)
T 1o50_A           78 GFI-----------------------P---------------------------------------KEELIRSS---MKR   92 (157)
T ss_dssp             CCC-----------------------C----------------------------------------------C---CCC
T ss_pred             hhh-----------------------c---------------------------------------cHHHHHHH---HHH
Confidence            000                       0                                       00000000   012


Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ....++.++|.    + ++++++++++.+|++.|.+++++++||+|+ +|+++|+||..|+++++.+
T Consensus        93 ~~~~~v~~im~----~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           93 LIAKNASEIML----D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             CSSCBHHHHCB----C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred             HcCCcHHHHcC----C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC-CCEEEEEEEHHHHHHHHHH
Confidence            34578999999    6 889999999999999999999999999997 4799999999999998864

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.64  E-value=5.3e-16  Score=131.60  Aligned_cols=131  Identities=18%  Similarity=0.190  Sum_probs=109.2

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA  120 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~  120 (351)
                      +..+++.++|....++++++++++|+.+|++.|.++++..+||+|+++        +++|+|+..||+.++....     
T Consensus        21 l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~~-----   87 (165)
T 3fhm_A           21 GMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADG--------VVLGIFTERDLVKAVAGQG-----   87 (165)
T ss_dssp             SSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS--------CEEEEEEHHHHHHHHHHHG-----
T ss_pred             hhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCC--------eEEEEEEHHHHHHHHHhcC-----
Confidence            456777888852114789999999999999999999999999999653        8999999999986543321     


Q ss_pred             hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713          121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF  200 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~  200 (351)
                                                                                                   ...
T Consensus        88 -----------------------------------------------------------------------------~~~   90 (165)
T 3fhm_A           88 -----------------------------------------------------------------------------AAS   90 (165)
T ss_dssp             -----------------------------------------------------------------------------GGG
T ss_pred             -----------------------------------------------------------------------------Ccc
Confidence                                                                                         012


Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                      ...++.++|.    +++.++.+++++.++++.|.+++++++||+|+  |+++|+||..|+++++...
T Consensus        91 ~~~~v~~~m~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~~~  151 (165)
T 3fhm_A           91 LQQSVSVAMT----KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARIGE  151 (165)
T ss_dssp             GTSBGGGTSB----SSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTTCC
T ss_pred             ccCCHHHHhc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHH
Confidence            3468899998    55899999999999999999999999999987  5999999999999998654

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.63  E-value=1.1e-15  Score=128.65  Aligned_cols=122  Identities=15%  Similarity=0.196  Sum_probs=103.2

Q ss_pred             HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713           40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA  119 (351)
Q Consensus        40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~  119 (351)
                      .|...+++++|. +..+++++++++|+.+|++.|.++++.++||+|++++       +++|+|+..|++.++        
T Consensus        34 ~l~~~~v~diM~-~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~-------~lvGivt~~dl~~~~--------   97 (156)
T 3oi8_A           34 DFSDLEVRDAMI-TRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKD-------EVLGILHAKDLLKYM--------   97 (156)
T ss_dssp             HHTTCBGGGTCE-EGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTT-------CEEEEEEGGGGGGGS--------
T ss_pred             ccCCCCHhheee-eHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCC-------cEEEEEEHHHHHHHH--------
Confidence            467899999996 3347899999999999999999999999999987532       899999998877210        


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                                                                                                 .  . 
T Consensus        98 ---------------------------------------------------------------------------~--~-   99 (156)
T 3oi8_A           98 ---------------------------------------------------------------------------F--N-   99 (156)
T ss_dssp             ---------------------------------------------------------------------------S--C-
T ss_pred             ---------------------------------------------------------------------------H--c-
Confidence                                                                                       0  0 


Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV  261 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil  261 (351)
                      ....++.++|+    + +.++++++++.++++.|.+++++++||+|+ +|+++|+||.+|++
T Consensus       100 ~~~~~v~~im~----~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~g~~~Givt~~Dil  155 (156)
T 3oi8_A          100 PEQFHLKSILR----P-AVFVPEGKSLTALLKEFREQRNHMAIVIDE-YGGTSGLVTFEDII  155 (156)
T ss_dssp             GGGCCHHHHCB----C-CCEEETTSBHHHHHHHHHHTTCCEEEEECT-TSSEEEEEEHHHHC
T ss_pred             CCcccHHHHcC----C-CEEECCCCCHHHHHHHHHhcCCeEEEEECC-CCCEEEEEEHHHhc
Confidence            03467899996    3 789999999999999999999999999998 48999999999985

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.63  E-value=1.6e-15  Score=134.43  Aligned_cols=121  Identities=13%  Similarity=0.213  Sum_probs=106.1

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  279 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~  279 (351)
                      .+..+++++|.    +++.++.+++++.+|++.|.+++++++||+|++ ++++|+||.+|+++.+            ...
T Consensus        10 ~~~~~~~~~~~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~------------~~~   72 (213)
T 1vr9_A           10 HHHMKVKKWVT----QDFPMVEESATVRECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLD------------LDS   72 (213)
T ss_dssp             ---CBGGGGCB----SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSC------------TTS
T ss_pred             ccccCHHHhhc----CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhc------------CCC
Confidence            45578899999    569999999999999999999999999999974 7999999999987554            234


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      ++.+    +|. ++++++.+++++.++++.|.+++++.+||+|+ +|+++|+||..||++.+..
T Consensus        73 ~v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~Dil~~~~~  130 (213)
T 1vr9_A           73 SVFN----KVS-LPDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALIE  130 (213)
T ss_dssp             BSGG----GCB-CTTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             cHHH----Hcc-CCCEEECCCCcHHHHHHHHHHhCCCEEEEEcC-CCEEEEEEEHHHHHHHHHH
Confidence            6888    586 78899999999999999999999999999998 8999999999999988754

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.63  E-value=3.2e-15  Score=123.12  Aligned_cols=124  Identities=13%  Similarity=0.135  Sum_probs=104.1

Q ss_pred             cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713           43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF  122 (351)
Q Consensus        43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~  122 (351)
                      .+++.++|.   ++++++++++|+.+|++.|.++++.++||+|+++      ..+++|+|+..|++.++...        
T Consensus         4 ~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~------~~~~~Givt~~dl~~~~~~~--------   66 (141)
T 2rih_A            4 AIRTSELLK---RPPVSLPETATIREVATELAKNRVGLAVLTARDN------PKRPVAVVSERDILRAVAQR--------   66 (141)
T ss_dssp             -CBGGGGCC---SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE------EEEEEEEEEHHHHHHHHHTT--------
T ss_pred             ceEHHHHhc---CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC------cceeEEEEEHHHHHHHHhcC--------
Confidence            368899997   6899999999999999999999999999998741      11799999999988543111        


Q ss_pred             ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713          123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS  202 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~  202 (351)
                                                                                                  ....
T Consensus        67 ----------------------------------------------------------------------------~~~~   70 (141)
T 2rih_A           67 ----------------------------------------------------------------------------LDLD   70 (141)
T ss_dssp             ----------------------------------------------------------------------------CCTT
T ss_pred             ----------------------------------------------------------------------------CCCC
Confidence                                                                                        1124


Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      .++.++|.    +++.+++++ ++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+.
T Consensus        71 ~~v~~~m~----~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           71 GPAMPIAN----SPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             SBSGGGCB----CCCEEETTS-BHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCHH
T ss_pred             CCHHHHcC----CCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-CCcEEEEEEHHHHHHHHH
Confidence            67899998    569999999 9999999999999999999997 489999999999987663

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.62  E-value=4.9e-15  Score=136.65  Aligned_cols=122  Identities=15%  Similarity=0.316  Sum_probs=106.9

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhh
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD  274 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~  274 (351)
                      +...+++++|+    .+++++++++++.+|++.|.++     ++.++||+|++ ++++|+||.+|++...          
T Consensus       132 ~~~~~v~~iM~----~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~~----------  196 (278)
T 2yvy_A          132 YEEDEAGGLMT----PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVAD----------  196 (278)
T ss_dssp             SCTTBGGGTCB----SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHHHHHSC----------
T ss_pred             CCcchHHhhcC----CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHHHhcCC----------
Confidence            56789999999    4599999999999999999986     78999999984 8999999999997541          


Q ss_pred             hhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       275 ~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                        ...++.+    +|. +++++|++++++.++++.|.+++.+.+||||+ +|+++|+||..||+..+.+.
T Consensus       197 --~~~~v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivT~~Dil~~i~~e  258 (278)
T 2yvy_A          197 --PRTRVAE----IMN-PKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLEAE  258 (278)
T ss_dssp             --TTCBSTT----TSB-SSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHC---
T ss_pred             --CCCcHHH----HhC-CCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC-CCeEEEEEEHHHHHHHHHHH
Confidence              3457888    586 78999999999999999999999999999998 89999999999999987643

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.62  E-value=2.7e-15  Score=126.62  Aligned_cols=133  Identities=16%  Similarity=0.197  Sum_probs=108.0

Q ss_pred             ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh
Q 018713           42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA  121 (351)
Q Consensus        42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~  121 (351)
                      ..+++.++|.   ++++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..||+.++........  
T Consensus         3 ~~~~v~dim~---~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~--------~lvGivt~~dl~~~~~~~~~~~~--   69 (160)
T 2o16_A            3 LMIKVEDMMT---RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANK--------KLLGIVSQRDLLAAQESSLQRSA--   69 (160)
T ss_dssp             CCCBGGGTSE---ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC--------BEEEEEEHHHHHHHHHHHCC-----
T ss_pred             CcCcHHHHhc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC--------cEEEEEeHHHHHHHHHHhhcccc--
Confidence            3578899996   5788999999999999999999999999998643        89999999999966543211000  


Q ss_pred             hccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCC
Q 018713          122 FSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFK  201 (351)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~  201 (351)
                                                                                               .......
T Consensus        70 -------------------------------------------------------------------------~~~~~~~   76 (160)
T 2o16_A           70 -------------------------------------------------------------------------QGDSLAF   76 (160)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -------------------------------------------------------------------------cccchhc
Confidence                                                                                     0001234


Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ..++.++|.    .++.++++++++.+|++.|.+++++++||+|+  |+++|+||..|+++++..
T Consensus        77 ~~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           77 ETPLFEVMH----TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             CCBHHHHSC----SCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHH
T ss_pred             ccCHHHHhc----CCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence            578999999    56999999999999999999999999999986  599999999999998753

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.62  E-value=3.9e-15  Score=131.28  Aligned_cols=122  Identities=11%  Similarity=0.169  Sum_probs=106.6

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHc---CceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHH
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSEC---NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAEL  117 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~---~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~  117 (351)
                      +.+.++.++|.   .+++++++++|+.+|++.|.++   ++..+||+|+++        +++|+|+..|++.        
T Consensus        51 ~~~~~v~~iM~---~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~--------~lvGivt~~dll~--------  111 (205)
T 3kxr_A           51 YSENEIGRYTD---HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEAD--------KYLGTVRRYDIFK--------  111 (205)
T ss_dssp             SCTTCGGGGCB---CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTC--------BEEEEEEHHHHTT--------
T ss_pred             CCcchHHhhcc---CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCC--------eEEEEEEHHHHHh--------
Confidence            45678999997   5899999999999999999997   899999999753        8999999988761        


Q ss_pred             HhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhc
Q 018713          118 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE  197 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~  197 (351)
                                                                                                      
T Consensus       112 --------------------------------------------------------------------------------  111 (205)
T 3kxr_A          112 --------------------------------------------------------------------------------  111 (205)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                       .....+++++|+    ++++++++++++.++++.|.+++++.+||+|++ |+++|+||..|+++.+.+.
T Consensus       112 -~~~~~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~-g~lvGiIT~~Dil~~i~~e  175 (205)
T 3kxr_A          112 -HEPHEPLISLLS----EDSRALTANTTLLDAAEAIEHSREIELPVIDDA-GELIGRVTLRAATALVREH  175 (205)
T ss_dssp             -SCTTSBGGGGCC----SSCCCEETTSCHHHHHHHHHTSSCSEEEEECTT-SBEEEEEEHHHHHHHHHHH
T ss_pred             -CCCcchHHHHhc----CCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHHH
Confidence             123467899998    558999999999999999999999999999984 8999999999999998643

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.62  E-value=2e-15  Score=139.87  Aligned_cols=122  Identities=15%  Similarity=0.338  Sum_probs=108.5

Q ss_pred             CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchh
Q 018713          199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF  273 (351)
Q Consensus       199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l  273 (351)
                      .+...+|+++|+    ++++++++++++.+|++.|.++     +++++||+|++ |+++|+||.+|++...         
T Consensus       133 ~~~~~~v~~iM~----~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~dll~~~---------  198 (286)
T 2oux_A          133 HYEDETAGAIMT----TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVND---------  198 (286)
T ss_dssp             TSCTTBHHHHCB----SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSC---------
T ss_pred             cCChHHHHHhCC----CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHHHHcCC---------
Confidence            367789999999    5599999999999999999987     88999999984 8999999999997541         


Q ss_pred             hhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          274 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       274 ~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                         ...++.+    +|. +++++|++++++.++++.|.+++.+.+||||+ +|+++|+||..||+..+.+
T Consensus       199 ---~~~~v~~----im~-~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          199 ---DDTLIAD----ILN-ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             ---TTSBHHH----HSB-SCCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             ---CCCcHHH----HcC-CCCeeecCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHHH
Confidence               3457888    586 78999999999999999999999999999998 8999999999999988754

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.61  E-value=1.1e-15  Score=124.84  Aligned_cols=126  Identities=18%  Similarity=0.279  Sum_probs=102.9

Q ss_pred             ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713           45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV  124 (351)
Q Consensus        45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~  124 (351)
                      +++++|....++++++++++|+.+|++.|.++++.++||+| ++        +++|+|+..||+.++...          
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~--------~~~Givt~~dl~~~~~~~----------   67 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DE--------KLVGILTERDFSRKSYLL----------   67 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TT--------EEEEEEEHHHHHHHGGGS----------
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CC--------EEEEEEehHHHHHHHHHc----------
Confidence            66677741125788999999999999999999999999998 42        899999999988432111          


Q ss_pred             ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713          125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~  204 (351)
                                                                                              .......+
T Consensus        68 ------------------------------------------------------------------------~~~~~~~~   75 (135)
T 2rc3_A           68 ------------------------------------------------------------------------DKPVKDTQ   75 (135)
T ss_dssp             ------------------------------------------------------------------------SSCGGGSB
T ss_pred             ------------------------------------------------------------------------CCCcccCC
Confidence                                                                                    01123568


Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                      +.++|.    +++.++++++++.++++.|.+++++++||+| + |+++|+||.+|+++++.+.
T Consensus        76 v~~~m~----~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           76 VKEIMT----RQVAYVDLNNTNEDCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             GGGTSB----CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHC-
T ss_pred             HHHhcc----CCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHHHHHHHHhc
Confidence            999998    5589999999999999999999999999999 4 6999999999999988643

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.61  E-value=9.4e-16  Score=124.86  Aligned_cols=126  Identities=18%  Similarity=0.268  Sum_probs=103.3

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA  120 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~  120 (351)
                      +.-+++.++|.   ++++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..|++...+..      
T Consensus         5 ~~~~~v~~im~---~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~--------~~~Givt~~dl~~~~~~~------   67 (133)
T 1y5h_A            5 FTMTTARDIMN---AGVTCVGEHETLTAAAQYMREHDIGALPICGDDD--------RLHGMLTDRDIVIKGLAA------   67 (133)
T ss_dssp             ---CCHHHHSE---ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGG--------BEEEEEEHHHHHHTTGGG------
T ss_pred             hhhcCHHHHhc---CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCC--------eEEEEEeHHHHHHHHHhc------
Confidence            34467888886   5788999999999999999999999999998643        899999999987311100      


Q ss_pred             hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713          121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF  200 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~  200 (351)
                                                                                                  ....
T Consensus        68 ----------------------------------------------------------------------------~~~~   71 (133)
T 1y5h_A           68 ----------------------------------------------------------------------------GLDP   71 (133)
T ss_dssp             ----------------------------------------------------------------------------TCCT
T ss_pred             ----------------------------------------------------------------------------CCCc
Confidence                                                                                        0112


Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      ...++.++|.    +++.++++++++.++++.|.+++.+++||+|+  |+++|+||.+|+++++.
T Consensus        72 ~~~~v~~~m~----~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           72 NTATAGELAR----DSIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHLP  130 (133)
T ss_dssp             TTSBHHHHHT----TCCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTCC
T ss_pred             cccCHHHHhc----CCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            3578999998    55999999999999999999999999999986  59999999999998774

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.60  E-value=1.5e-15  Score=129.89  Aligned_cols=154  Identities=16%  Similarity=0.226  Sum_probs=107.5

Q ss_pred             cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713           43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF  122 (351)
Q Consensus        43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~  122 (351)
                      .++++++|. +..+++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..||+............  
T Consensus         3 ~~~v~dim~-~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~--------~~~Givt~~dl~~~~~~~~~~~~~--   71 (180)
T 3sl7_A            3 GYTVGDFMT-PRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNW--------TLVGVVSDYDLLALDSISGRSQND--   71 (180)
T ss_dssp             CCBHHHHSE-EGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC--------BEEEEEEHHHHTCC------------
T ss_pred             ceeHHHhcC-CCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCC--------eEEEEEEHHHHHhhhhhccccCCc--
Confidence            356778886 122788999999999999999999999999999753        899999999998432111000000  


Q ss_pred             ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713          123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS  202 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~  202 (351)
                                                     ..+.             .......       ....++...+.   ....
T Consensus        72 -------------------------------~~~~-------------~~~~~~~-------~~~~~~~~~~~---~~~~   97 (180)
T 3sl7_A           72 -------------------------------TNLF-------------PDVDSTW-------KTFNELQKLIS---KTYG   97 (180)
T ss_dssp             -----------------------------------------------------CC-------CSHHHHHHHHH---TTTT
T ss_pred             -------------------------------cccc-------------ccccchh-------hhhHHHHHHHh---cccc
Confidence                                           0000             0000000       00011111111   2346


Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      .++.++|+    +++.++++++++.+|++.|.+++++++||+|+ +|+++|+||++|+++++..
T Consensus        98 ~~v~~~m~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           98 KVVGDLMT----PSPLVVRDSTNLEDAARLLLETKFRRLPVVDA-DGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             CBHHHHSE----ESCCCEETTSBHHHHHHHHTTSTTCEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             ccHHHHhC----CCceEeCCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHHH
Confidence            78999999    44889999999999999999999999999997 4899999999999998854

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.60  E-value=4.6e-15  Score=124.94  Aligned_cols=135  Identities=13%  Similarity=0.211  Sum_probs=105.7

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecC-CCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIP-DAPSSSDWKERYLGIVDYSAIILWVLETAELAA  119 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~-~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~  119 (351)
                      +..++++++|.   ++++++++++|+.+|++.|.+++++++||+|+ +.       ++++|+|+..||+.++....... 
T Consensus        10 ~~~~~v~dim~---~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~-------~~~~Givt~~dl~~~~~~~~~~~-   78 (164)
T 2pfi_A           10 SHHVRVEHFMN---HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTES-------QILVGIVQRAQLVQALQAEPPSR-   78 (164)
T ss_dssp             CCSCBHHHHCB---CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTT-------CBEEEEEEHHHHHHHHHC------
T ss_pred             ccCCCHHHHcC---CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCC-------CEEEEEEEHHHHHHHHHhhcccc-
Confidence            45688889997   57889999999999999999999999999986 22       28999999999985442210000 


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                                                                                                    ..
T Consensus        79 ------------------------------------------------------------------------------~~   80 (164)
T 2pfi_A           79 ------------------------------------------------------------------------------AP   80 (164)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          00


Q ss_pred             CCcCchHhhhhccCC-CC-cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          200 FKSTTVRSIIKSYRW-AP-FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       200 ~~~~~V~dim~~~~~-~~-~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ....++.++|..... .+ +.++.+++++.++++.|.+++.+++||+|+  |+++|+||.+|+++++.+
T Consensus        81 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           81 GHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR--GRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHHHH
T ss_pred             cccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence            234578888873200 11 678999999999999999999999999993  699999999999998854

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.60  E-value=2.2e-15  Score=126.44  Aligned_cols=128  Identities=20%  Similarity=0.239  Sum_probs=105.2

Q ss_pred             CccccCCCCCC---CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713           44 IPVLSFPNVPG---GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA  120 (351)
Q Consensus        44 ~~v~~~~~~~~---~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~  120 (351)
                      .+++++|....   ++++++++++|+.+|++.|.++++..+||.+++         +++|+|+..||+.++...      
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~---------~~~Givt~~dl~~~~~~~------   71 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD---------DIAGIVTERDYARKVVLQ------   71 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSS---------SEEEEEEHHHHHHHSGGG------
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCC---------EEEEEEEHHHHHHHHHhc------
Confidence            34666665333   678999999999999999999999999996532         899999999998543211      


Q ss_pred             hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713          121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF  200 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~  200 (351)
                                                                                                  ....
T Consensus        72 ----------------------------------------------------------------------------~~~~   75 (157)
T 4fry_A           72 ----------------------------------------------------------------------------ERSS   75 (157)
T ss_dssp             ----------------------------------------------------------------------------TCCS
T ss_pred             ----------------------------------------------------------------------------cCCc
Confidence                                                                                        0113


Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCC
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK  268 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~  268 (351)
                      ...++.++|.    +++.++.+++++.++++.|.+++++++||+|+  |+++|+||.+|+++++....
T Consensus        76 ~~~~v~~~m~----~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~l~~~~  137 (157)
T 4fry_A           76 KATRVEEIMT----AKVRYVEPSQSTDECMALMTEHRMRHLPVLDG--GKLIGLISIGDLVKSVIADQ  137 (157)
T ss_dssp             SSCBHHHHSB----SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTC
T ss_pred             cccCHHHHcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHHH
Confidence            4578999999    55899999999999999999999999999993  69999999999999987643

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.60  E-value=5.1e-15  Score=127.81  Aligned_cols=125  Identities=20%  Similarity=0.268  Sum_probs=106.2

Q ss_pred             cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713           43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF  122 (351)
Q Consensus        43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~  122 (351)
                      .+++.++|.   ++++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..||+.++...        
T Consensus         8 ~~~v~~im~---~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g--------~~vGivt~~dl~~~~~~~--------   68 (184)
T 1pvm_A            8 FMRVEKIMN---SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNG--------NDVGLLSERSIIKRFIPR--------   68 (184)
T ss_dssp             CCBGGGTSB---TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTS--------CEEEEEEHHHHHHHTGGG--------
T ss_pred             ccCHHHhcC---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCC--------cEEEEEeHHHHHHHHhhc--------
Confidence            378899996   6899999999999999999999999999998653        899999999998542110        


Q ss_pred             ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713          123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS  202 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~  202 (351)
                                                                                                ......
T Consensus        69 --------------------------------------------------------------------------~~~~~~   74 (184)
T 1pvm_A           69 --------------------------------------------------------------------------NKKPDE   74 (184)
T ss_dssp             --------------------------------------------------------------------------CCCGGG
T ss_pred             --------------------------------------------------------------------------ccCccc
Confidence                                                                                      011234


Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      .++.++|.    +++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||..|+++++.
T Consensus        75 ~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           75 VPIRLVMR----KPIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             SBGGGTSB----SSCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTSC
T ss_pred             CCHHHHhC----CCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence            68899998    55899999999999999999999999999998 489999999999987764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.59  E-value=8.6e-15  Score=122.57  Aligned_cols=134  Identities=16%  Similarity=0.259  Sum_probs=106.3

Q ss_pred             HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713           40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA  119 (351)
Q Consensus        40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~  119 (351)
                      .|..+++.++|. +.++++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..|++.++.....   
T Consensus         7 ~l~~~~v~~im~-~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~--------~~~Givt~~dl~~~~~~~~~---   74 (157)
T 2emq_A            7 EFMQMTVKPFLI-PADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSY--------KLHGLISMTMMMDAILGLER---   74 (157)
T ss_dssp             ---CCBSTTTCE-EGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTC--------CEEEEEEHHHHHHHSBCSSS---
T ss_pred             hHhhCcHHhhcc-CCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCC--------CEEEEeeHHHHHHHHhcccc---
Confidence            467899999996 223788999999999999999999999999998653        89999999999853211000   


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                                                                                        ..         ...
T Consensus        75 ------------------------------------------------------------------~~---------~~~   79 (157)
T 2emq_A           75 ------------------------------------------------------------------IE---------FER   79 (157)
T ss_dssp             ------------------------------------------------------------------BC---------GGG
T ss_pred             ------------------------------------------------------------------cc---------hHH
Confidence                                                                              00         011


Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                      ....++.++|.    .++.++++++++.++++.|.++++  +||+|+ +|+++|+||.+|+++++...
T Consensus        80 ~~~~~v~~~m~----~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~-~g~~~Giit~~dil~~~~~~  140 (157)
T 2emq_A           80 LETMKVEEVMN----RNIPRLRLDDSLMKAVGLIVNHPF--VCVEND-DGYFAGIFTRREVLKQLNKQ  140 (157)
T ss_dssp             GGTCBGGGTCB----CCCCEEETTSBHHHHHHHHHHSSE--EEEECS-SSSEEEEEEHHHHHHHHHHT
T ss_pred             hcCCcHHHHhC----CCCceecCCCcHHHHHHHHhhCCE--EEEEcC-CCeEEEEEEHHHHHHHHHHH
Confidence            23468899999    569999999999999999999887  999997 48999999999999998654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.59  E-value=5e-15  Score=133.72  Aligned_cols=199  Identities=17%  Similarity=0.186  Sum_probs=116.1

Q ss_pred             cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhh-
Q 018713           43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAA-  121 (351)
Q Consensus        43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~-  121 (351)
                      ..+++++|.   ++++++++++++.+|++.|.+++++++||+|+++        +++|+++..||+.++.......... 
T Consensus         6 ~~~v~~im~---~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~--------~l~Giit~~di~~~~~~~~~~~~~~~   74 (245)
T 3l2b_A            6 KLKVEDLEM---DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNN--------HLLGMLSTSNITATYMDIWDSNILAK   74 (245)
T ss_dssp             CCBGGGSCC---BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTC--------BEEEEEEHHHHHHHHHCCCCTTHHHH
T ss_pred             cCcHHHhcC---CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCC--------EEEEEEEHHHHHHHHHHhhhhhhhhh
Confidence            478999997   6789999999999999999999999999999753        8999999999998876532110000 


Q ss_pred             ----h-----cccccccccccc---------------c----cccccchhhccCCCchhhhhhHHhhhhhh-hhcccccc
Q 018713          122 ----F-----SVGTATAAGVGT---------------G----TVGALGALALGMTGPAAVAGLTVAAAGAA-VAGGLAAE  172 (351)
Q Consensus       122 ----~-----~~~~~~~~~~~~---------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  172 (351)
                          +     .....-..|...               .    .......+..|.+ ...........++.. +++|..+.
T Consensus        75 ~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr-~~~~~~~i~~~~~~liit~~~~~~  153 (245)
T 3l2b_A           75 SATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDR-AEIQAELIELKVSLLIVTGGHTPS  153 (245)
T ss_dssp             TTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSC-HHHHHHHHHTTCSEEEECTTCCCC
T ss_pred             ccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCC-HHHHHHHHHcCCCEEEECCCCCCC
Confidence                0     000000000000               0    0001111122222 222222222223322 44443221


Q ss_pred             cCC--------CCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEE
Q 018713          173 KGA--------GKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII  244 (351)
Q Consensus       173 ~~~--------~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVv  244 (351)
                      ...        ...-.     +..+......  ......+++++|++   .++.++++++++.++++.|.+++++++||+
T Consensus       154 ~~v~~~a~~~~~~~i~-----t~~d~~~~~~--~~~~~~~v~~im~~---~~~~~~~~~~~~~~~~~~m~~~~~~~~pVv  223 (245)
T 3l2b_A          154 KEIIELAKKNNITVIT-----TPHDSFTASR--LIVQSLPVDYVMTK---DNLVAVSTDDLVEDVKVTMSETRYSNYPVI  223 (245)
T ss_dssp             HHHHHHHHHHTCEEEE-----CSSCHHHHHH--HGGGGSBHHHHSBC---TTCCCEETTSBHHHHHHHHHHHCCSEEEEE
T ss_pred             HHHHHHHHHcCCeEEE-----eCCChHHHHH--HHhcCCceeeEecC---CccEEECCCCcHHHHHHHHHhcCCceEEEE
Confidence            100        00000     0011111111  12345789999982   248899999999999999999999999999


Q ss_pred             cCCCCCEEEEEeHHHHHHHh
Q 018713          245 EPGTPDIKNYITQSAVVQGL  264 (351)
Q Consensus       245 d~~~g~liGiIt~~dil~~l  264 (351)
                      |++ |+++|+||.+|++++.
T Consensus       224 d~~-~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          224 DEN-NKVVGSIARFHLISTH  242 (245)
T ss_dssp             CTT-CBEEEEEECC------
T ss_pred             cCC-CeEEEEEEHHHhhchh
Confidence            984 8999999999998765

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.57  E-value=4.4e-15  Score=124.91  Aligned_cols=133  Identities=14%  Similarity=0.229  Sum_probs=106.4

Q ss_pred             HhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713           40 AFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA  119 (351)
Q Consensus        40 ~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~  119 (351)
                      .|...++.++|. +..+++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..||+.++.....   
T Consensus        10 ~l~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~--------~lvGivt~~dl~~~~~~~~~---   77 (159)
T 1yav_A           10 QLLEATVGQFMI-EADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSY--------RLHGLIGTNMIMNSIFGLER---   77 (159)
T ss_dssp             -CTTCBHHHHSE-EGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTC--------BEEEEEEHHHHHHHHBCSSS---
T ss_pred             HHhHhhHHHHhC-CccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCC--------CEEEEeEHHHHHHHhhhhcc---
Confidence            356688889886 112688999999999999999999999999998753        89999999999854321100   


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                                                                                        .  +       ...
T Consensus        78 ------------------------------------------------------------------~--~-------~~~   82 (159)
T 1yav_A           78 ------------------------------------------------------------------I--E-------FEK   82 (159)
T ss_dssp             ------------------------------------------------------------------B--C-------GGG
T ss_pred             ------------------------------------------------------------------c--c-------hhh
Confidence                                                                              0  0       011


Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ....++.++|.    +++.++.+++++.++++.|.++++  +||+|+ +|+++|+||.+|+++++..
T Consensus        83 ~~~~~v~~~m~----~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~-~g~~vGiit~~dil~~~~~  142 (159)
T 1yav_A           83 LDQITVEEVML----TDIPRLHINDPIMKGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELNK  142 (159)
T ss_dssp             TTTSBHHHHSB----CSCCEEETTSBHHHHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             hccCCHHHhcC----CCCceEcCCCCHHHHHHHHHhCCE--EEEEeC-CCeEEEEEEHHHHHHHHHH
Confidence            34578999999    559999999999999999998876  999997 4899999999999998854

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.56  E-value=8e-15  Score=126.04  Aligned_cols=156  Identities=15%  Similarity=0.156  Sum_probs=110.1

Q ss_pred             HHhccCccccCCCCCC-CCcEEE--cCCCCHHHHHHHHHHcCceeccee--cCCCCCCCccccceeeEeeHHHHHHHHHH
Q 018713           39 AAFARIPVLSFPNVPG-GRVIEI--MADTTIPDAVKILSECNILSAPVK--IPDAPSSSDWKERYLGIVDYSAIILWVLE  113 (351)
Q Consensus        39 ~~~~~~~v~~~~~~~~-~~~i~v--~~~~sl~~al~~m~~~~i~~~pVv--d~~~~~~~~~~~~~vGiv~~~di~~~~~~  113 (351)
                      .++..++++++|.... ++++++  ++++|+.+|++.|.+++++++||+  |++        ++++|+|+..|++.++..
T Consensus         6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~--------~~lvGiit~~dl~~~~~~   77 (185)
T 2j9l_A            6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES--------QRLVGFVLRRDLIISIEN   77 (185)
T ss_dssp             ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT--------CBEEEEEEHHHHHHHHHH
T ss_pred             hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC--------CeEEEEEEHHHHHHHHHh
Confidence            4567899999997311 127778  999999999999999999999999  443        289999999999976554


Q ss_pred             hhHHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHH
Q 018713          114 TAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKV  193 (351)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  193 (351)
                      ....... +          ..+   ...  ......+                                    ..     
T Consensus        78 ~~~~~~~-~----------~~~---~~~--~~~~~~~------------------------------------~~-----  100 (185)
T 2j9l_A           78 ARKKQDG-V----------VST---SII--YFTEHSP------------------------------------PL-----  100 (185)
T ss_dssp             HHTSCSC-C----------CTT---CEE--ECSSSCC------------------------------------CC-----
T ss_pred             hcccCCC-c----------ccc---cee--ecccCCc------------------------------------cc-----
Confidence            3100000 0          000   000  0000000                                    00     


Q ss_pred             hhhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       194 l~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                        ........++.++|.    .++.++.+++++.+|++.|.+++++++||+|+  |+++|+||..|+++++...
T Consensus       101 --~~~~~~~~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~--g~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A          101 --PPYTPPTLKLRNILD----LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             --CTTCCCCEECGGGEE----SSCCEEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHHH
T ss_pred             --ccccccCccHHHhhC----cCCeEeCCCCCHHHHHHHHHhCCCcEEEEEEC--CEEEEEEEHHHHHHHHHHh
Confidence              001234568999998    55999999999999999999999999999993  6999999999999988654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.56  E-value=1.6e-14  Score=144.83  Aligned_cols=128  Identities=9%  Similarity=0.197  Sum_probs=110.0

Q ss_pred             CCcCchHhhhhccCCCCcEEecCC-CCHHHHHHHHHhCCCCEEEEEc-CCCCCEEEEEeHHHHHHHhhcCCCCchhhhhc
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATD-DSMLSVLLLLSKYRLRNVPIIE-PGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA  277 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~-~sl~ea~~~m~~~~~~~vpVvd-~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~  277 (351)
                      +...+|+++|+    ++++++.++ +++.+++++|.+++++++||+| + +++++|+||.+||++.+.....      ..
T Consensus       381 l~~~~V~diM~----~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~-~g~lvGiVt~~Dll~~l~~~~~------~~  449 (527)
T 3pc3_A          381 WWSLAIAELEL----PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD-DGSVLGVVGQETLITQIVSMNR------QQ  449 (527)
T ss_dssp             TTTSBGGGGCC----CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT-TCCEEEEEEHHHHHHHHHHHCC------CT
T ss_pred             ccCCcHHHhCc----CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC-CCEEEEEEEHHHHHHHHHhccC------cC
Confidence            34578999999    569999999 9999999999999999999999 5 4799999999999988865321      13


Q ss_pred             cCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCC---CCeEEEEEeHHHHHHHhcCcc
Q 018713          278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ---QKKIVGNVSIRDIRHLLLKPE  345 (351)
Q Consensus       278 ~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~---~g~liGiIt~~DIl~~l~~~~  345 (351)
                      ..++++    +|+ +++++|++++++.+++++|.++++  +||||++   +|+++|+||..||++.+.++.
T Consensus       450 ~~~V~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          450 SDPAIK----ALN-KRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             TSBGGG----GEE-TTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             CCcHHH----Hhc-CCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence            568888    686 899999999999999999977765  7999972   289999999999999998765

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.53  E-value=5.1e-14  Score=139.29  Aligned_cols=121  Identities=15%  Similarity=0.320  Sum_probs=107.8

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhh
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD  274 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~  274 (351)
                      +...+++++|+    .+++++++++++.++++.|.++     +++++||+|++ ++++|+||.+|++...          
T Consensus       152 ~~~~~v~~iM~----~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~~----------  216 (473)
T 2zy9_A          152 YEEDEAGGLMT----PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVAD----------  216 (473)
T ss_dssp             SCTTBSTTTCB----SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHSC----------
T ss_pred             CCCCCHHHhCC----CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-CcEEEEEEHHHHhcCC----------
Confidence            67789999999    5599999999999999999986     57999999984 8999999999997531          


Q ss_pred             hhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       275 ~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                        .+.++++    +|+ ++++++++++++.++++.|.+++.+.+||||+ +|+++|+||..||++.+.+
T Consensus       217 --~~~~v~d----im~-~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe-~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          217 --PRTRVAE----IMN-PKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             --TTSBGGG----TSB-SSCCCEESSSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred             --CCCcHHH----HhC-CCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcC-CCEEEEEEehHhhHHHHHH
Confidence              3457888    686 78999999999999999999999999999998 8999999999999988653

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.53  E-value=3.2e-14  Score=131.75  Aligned_cols=120  Identities=15%  Similarity=0.260  Sum_probs=104.8

Q ss_pred             ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHc-----CceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhH
Q 018713           42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSEC-----NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAE  116 (351)
Q Consensus        42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~-----~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~  116 (351)
                      ...++.++|.   ++++++++++|+.+|++.|.++     ++.++||+|+++        +++|+|+..|++.       
T Consensus       135 ~~~~v~~iM~---~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~--------~lvGivt~~dll~-------  196 (286)
T 2oux_A          135 EDETAGAIMT---TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQEN--------HLVGVISLRDLIV-------  196 (286)
T ss_dssp             CTTBHHHHCB---SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTC--------BEEEEEEHHHHTT-------
T ss_pred             ChHHHHHhCC---CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCC--------eEEEEEEHHHHHc-------
Confidence            4567888886   5899999999999999999998     788899998753        8999999988771       


Q ss_pred             HHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhh
Q 018713          117 LAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQ  196 (351)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~  196 (351)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (286)
T 2oux_A          197 --------------------------------------------------------------------------------  196 (286)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       197 ~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                        .....++.++|.    ++++++++++++.++++.|.+++++++||+|+ +|+++|+||..|+++.+.+
T Consensus       197 --~~~~~~v~~im~----~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          197 --NDDDTLIADILN----ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             --SCTTSBHHHHSB----SCCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             --CCCCCcHHHHcC----CCCeeecCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHHH
Confidence              123468999998    55999999999999999999999999999998 4899999999999998854

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.50  E-value=8.3e-14  Score=128.37  Aligned_cols=122  Identities=17%  Similarity=0.247  Sum_probs=104.4

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHc-----CceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSEC-----NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA  115 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~-----~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~  115 (351)
                      +...++.++|.   .+++++++++|+.+|++.|.++     ++.++||+|+++        +++|+|+..|++..     
T Consensus       132 ~~~~~v~~iM~---~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~--------~lvGivt~~dll~~-----  195 (278)
T 2yvy_A          132 YEEDEAGGLMT---PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKG--------RLKGVLSLRDLIVA-----  195 (278)
T ss_dssp             SCTTBGGGTCB---SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTC--------BEEEEEEHHHHHHS-----
T ss_pred             CCcchHHhhcC---CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCC--------CEEEEEEHHHHhcC-----
Confidence            35578899997   5899999999999999999987     799999998753        89999999988720     


Q ss_pred             HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhh
Q 018713          116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL  195 (351)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~  195 (351)
                                                                                                      
T Consensus       196 --------------------------------------------------------------------------------  195 (278)
T 2yvy_A          196 --------------------------------------------------------------------------------  195 (278)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       196 ~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                          ....++.++|.    ++++++++++++.++++.|.+++++.+||+|++ |+++|+||..|+++.+.+.
T Consensus       196 ----~~~~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivT~~Dil~~i~~e  258 (278)
T 2yvy_A          196 ----DPRTRVAEIMN----PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLEAE  258 (278)
T ss_dssp             ----CTTCBSTTTSB----SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHC---
T ss_pred             ----CCCCcHHHHhC----CCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCC-CeEEEEEEHHHHHHHHHHH
Confidence                12467899998    559999999999999999999999999999984 8999999999999988543

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.50  E-value=1.6e-14  Score=147.70  Aligned_cols=134  Identities=16%  Similarity=0.068  Sum_probs=106.0

Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHH-hCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCc--------
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLS-KYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD--------  271 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~-~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~--------  271 (351)
                      ...+|+|+|++.  +++.++++++++.|+.+.|. +++++++||+|+ +++++|+||.+|+++.+.......        
T Consensus       451 ~~~~V~diM~p~--~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~  527 (632)
T 3org_A          451 PEMTAREIMHPI--EGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-NGYLLGAISRKEIVDRLQHVLEDVPEPIAGHR  527 (632)
T ss_dssp             TTSBHHHHCBCT--TTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT-TCBBCCEESHHHHTTTTTTC------------
T ss_pred             ccCcHHHHhhcC--CCceEecCCCcHHHHHHHHHhcCCcceEEEEec-CCeEEEEEEHHHHHHHHHHHhhhccccccccc
Confidence            567899999944  56899999999999999999 799999999998 489999999999998765431000        


Q ss_pred             --------h----hhhhc---------------------cCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCee
Q 018713          272 --------W----FDIIA---------------------SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGI  318 (351)
Q Consensus       272 --------~----l~~l~---------------------~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~l  318 (351)
                              .    .+...                     ..++++    +|+ +++++|++++++.+++++|.+++++.+
T Consensus       528 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~----iMt-~~pitV~~~~~l~ea~~~M~~~~i~~l  602 (632)
T 3org_A          528 TLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVV----PCD-VSPIVVTSYSLVRQLHFLFVMLMPSMI  602 (632)
T ss_dssp             -------------------------------------------CC----SCC-CCCCEEETTCBHHHHHHHHHHTCCSEE
T ss_pred             ceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccch----hhc-CCCceecCCCcHHHHHHHHHhcCCCEE
Confidence                    0    00000                     012566    687 888899999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          319 PVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       319 pVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      ||++  +|+++|+||.+||++.+.+.
T Consensus       603 pVve--~G~lvGIVT~~Dll~~~~~~  626 (632)
T 3org_A          603 YVTE--RGKLVGIVEREDVAYGYSNS  626 (632)
T ss_dssp             EEEE--TTEEEEEEEGGGTEECCCC-
T ss_pred             EEEE--CCEEEEEEehhhHHHHHhhh
Confidence            9994  59999999999998776543

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.49  E-value=1.9e-13  Score=124.08  Aligned_cols=64  Identities=17%  Similarity=0.159  Sum_probs=55.4

Q ss_pred             ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHh
Q 018713           42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET  114 (351)
Q Consensus        42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~  114 (351)
                      .++++.++|.   +++++|.+++++.+|+++|.+++++++||+|++.      .++++|+|+..||+..+...
T Consensus        11 ~~~~v~diMt---~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~------~~~LvGiIt~~dl~~~l~~~   74 (250)
T 2d4z_A           11 YNIQVGDIMV---RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD------TNTLLGSIDRTEVEGLLQRR   74 (250)
T ss_dssp             SSCBTTSSSB---SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTT------TCBEEEEEEHHHHHHHHHHH
T ss_pred             CCCChHHhcC---CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCC------CCeEEEEEEHHHHHHHHHHh
Confidence            4688999997   6899999999999999999999999999998642      12799999999999765443

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.47  E-value=1.2e-13  Score=138.51  Aligned_cols=129  Identities=14%  Similarity=0.169  Sum_probs=108.5

Q ss_pred             HhccCccccCCCCCCCCcEEEcCC-CCHHHHHHHHHHcCceecceec-CCCCCCCccccceeeEeeHHHHHHHHHHhhHH
Q 018713           40 AFARIPVLSFPNVPGGRVIEIMAD-TTIPDAVKILSECNILSAPVKI-PDAPSSSDWKERYLGIVDYSAIILWVLETAEL  117 (351)
Q Consensus        40 ~~~~~~v~~~~~~~~~~~i~v~~~-~sl~~al~~m~~~~i~~~pVvd-~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~  117 (351)
                      .|...+|+++|.   ++++++.++ +|+.+|++.|.++++.++||+| +++        +++|+|+..||+.++...   
T Consensus       380 ~l~~~~V~diM~---~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g--------~lvGiVt~~Dll~~l~~~---  445 (527)
T 3pc3_A          380 WWWSLAIAELEL---PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDG--------SVLGVVGQETLITQIVSM---  445 (527)
T ss_dssp             TTTTSBGGGGCC---CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTC--------CEEEEEEHHHHHHHHHHH---
T ss_pred             cccCCcHHHhCc---CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCC--------EEEEEEEHHHHHHHHHhc---
Confidence            367899999997   689999999 9999999999999999999999 432        899999999998654321   


Q ss_pred             HhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhc
Q 018713          118 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE  197 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~  197 (351)
                                                                                                      
T Consensus       446 --------------------------------------------------------------------------------  445 (527)
T 3pc3_A          446 --------------------------------------------------------------------------------  445 (527)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CCCEEEEEeHHHHHHHhhcCC
Q 018713          198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG---TPDIKNYITQSAVVQGLEGCK  268 (351)
Q Consensus       198 ~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~---~g~liGiIt~~dil~~l~~~~  268 (351)
                      ......+|.++|+    ++++++++++++.+++++|.++++  +||+|++   +|+++|+||++||++++.+..
T Consensus       446 ~~~~~~~V~~im~----~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          446 NRQQSDPAIKALN----KRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             CCCTTSBGGGGEE----TTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             cCcCCCcHHHHhc----CCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence            1234578999999    669999999999999999976654  7999872   269999999999999997653

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.43  E-value=1.4e-12  Score=129.02  Aligned_cols=120  Identities=18%  Similarity=0.245  Sum_probs=104.9

Q ss_pred             ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHc-----CceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhH
Q 018713           42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSEC-----NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAE  116 (351)
Q Consensus        42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~-----~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~  116 (351)
                      .+.++.++|.   .+++++++++|+.+|++.|.++     ++.++||+|+++        +++|+|+..|++..      
T Consensus       153 ~~~~v~~iM~---~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~--------~lvGiVt~~Dll~~------  215 (473)
T 2zy9_A          153 EEDEAGGLMT---PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKG--------RLKGVLSLRDLIVA------  215 (473)
T ss_dssp             CTTBSTTTCB---SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTS--------BEEEEEEHHHHHHS------
T ss_pred             CCCCHHHhCC---CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCC--------cEEEEEEHHHHhcC------
Confidence            5577888997   5899999999999999999986     589999999753        89999999988720      


Q ss_pred             HHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhh
Q 018713          117 LAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQ  196 (351)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~  196 (351)
                                                                                                      
T Consensus       216 --------------------------------------------------------------------------------  215 (473)
T 2zy9_A          216 --------------------------------------------------------------------------------  215 (473)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       197 ~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                         ....+++++|+    +++.++++++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++.+.+
T Consensus       216 ---~~~~~v~dim~----~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~-g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          216 ---DPRTRVAEIMN----PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             ---CTTSBGGGTSB----SSCCCEESSSBHHHHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHH
T ss_pred             ---CCCCcHHHHhC----CCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCC-CEEEEEEehHhhHHHHHH
Confidence               13468999998    559999999999999999999999999999984 899999999999998754

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.41  E-value=7.1e-12  Score=124.81  Aligned_cols=158  Identities=11%  Similarity=0.173  Sum_probs=119.8

Q ss_pred             cccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecC--CCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           46 VLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIP--DAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~--~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      ..+.|.   .+++++++++|+.+|++.|.+++++++||+|+  ++        +++|+|+..|+..              
T Consensus       115 ~~~~m~---~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~--------~lvGiVt~rDl~~--------------  169 (511)
T 3usb_A          115 SESGVI---SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDER--------KLVGIITNRDMRF--------------  169 (511)
T ss_dssp             SSSCSS---SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTC--------BEEEEEEHHHHTT--------------
T ss_pred             cccccc---cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCC--------EEEEEEEehHhhh--------------
Confidence            344554   57889999999999999999999999999986  32        8999999988761              


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                                ......
T Consensus       170 --------------------------------------------------------------------------~~~~~~  175 (511)
T 3usb_A          170 --------------------------------------------------------------------------IQDYSI  175 (511)
T ss_dssp             --------------------------------------------------------------------------CCCSSS
T ss_pred             --------------------------------------------------------------------------hccCCC
Confidence                                                                                      012357


Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~  283 (351)
                      +|.++|++   .+++++++++++.++++.|.+++++.+||+|++ |+++|+||.+|+++.+....           ...+
T Consensus       176 ~V~~vM~~---~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~-g~l~GiIT~~Dil~~~~~p~-----------a~~D  240 (511)
T 3usb_A          176 KISDVMTK---EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNN-GVLQGLITIKDIEKVIEFPN-----------SAKD  240 (511)
T ss_dssp             BHHHHCCC---CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHCTT-----------CCBC
T ss_pred             cHHHhccc---CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCC-CCEeeeccHHHHHHhhhccc-----------chhh
Confidence            89999993   168999999999999999999999999999984 89999999999999885422           1122


Q ss_pred             cccCccCCCC--ceEEcCCCcHHHHHHHHHhcCCCeeEEEe
Q 018713          284 LGLPFMSSDE--VITIQSNELILEAFKRMKDNNIGGIPVVE  322 (351)
Q Consensus       284 L~~~~m~~~~--v~~V~~~~~l~~al~~m~~~~~~~lpVvd  322 (351)
                      .    +. +.  ...+.......+.+..|.+.+++.+.|-.
T Consensus       241 ~----~~-rl~V~aavg~~~d~~era~aLveaGvd~I~Id~  276 (511)
T 3usb_A          241 K----QG-RLLVGAAVGVTADAMTRIDALVKASVDAIVLDT  276 (511)
T ss_dssp             T----TS-CBCCEEEECSSTTHHHHHHHHHHTTCSEEEEEC
T ss_pred             h----cc-ceeeeeeeeeccchHHHHHHHHhhccceEEecc
Confidence            1    11 11  12344344455566677888888665543

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.39  E-value=1.4e-12  Score=129.96  Aligned_cols=112  Identities=23%  Similarity=0.364  Sum_probs=99.5

Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCC
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEP--GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  292 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~--~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~  292 (351)
                      .+++++++++++.+++++|.+++++++||+|+  + ++++|+||.+|++..    ..       ...++.+    +|+ +
T Consensus       121 ~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~-~~lvGiVt~rDl~~~----~~-------~~~~V~~----vM~-~  183 (511)
T 3usb_A          121 SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDE-RKLVGIITNRDMRFI----QD-------YSIKISD----VMT-K  183 (511)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTT-CBEEEEEEHHHHTTC----CC-------SSSBHHH----HCC-C
T ss_pred             cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCC-CEEEEEEEehHhhhh----cc-------CCCcHHH----hcc-c
Confidence            45889999999999999999999999999986  4 799999999999541    11       3567888    586 5


Q ss_pred             -CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          293 -EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       293 -~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                       +++++++++++.++++.|.+++++.+||||+ +|+++|+||.+||++.+...
T Consensus       184 ~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe-~g~l~GiIT~~Dil~~~~~p  235 (511)
T 3usb_A          184 EQLITAPVGTTLSEAEKILQKYKIEKLPLVDN-NGVLQGLITIKDIEKVIEFP  235 (511)
T ss_dssp             CCCCCEETTCCHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHCT
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC-CCCEeeeccHHHHHHhhhcc
Confidence             8999999999999999999999999999998 99999999999999998763

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.35  E-value=6.2e-12  Score=124.94  Aligned_cols=117  Identities=19%  Similarity=0.321  Sum_probs=104.1

Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEc--CCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIE--PGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd--~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      +.++|.    .+++++++++++.++++.|.+++++++||+|  + +++++|+||.+|++...    .       ...++.
T Consensus        92 ~~~im~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-~~~lvGivt~~Dl~~~~----~-------~~~~v~  155 (491)
T 1zfj_A           92 SENGVI----IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-NRKLVGIITNRDMRFIS----D-------YNAPIS  155 (491)
T ss_dssp             HTTTTS----SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-TCBEEEEEEHHHHHHCS----C-------SSSBTT
T ss_pred             HHhcCc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCC-CCEEEEEEEHHHHhhhc----c-------CCCcHH
Confidence            467898    4589999999999999999999999999998  6 48999999999997541    1       355788


Q ss_pred             ccccCccCCC-CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          283 DLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       283 ~L~~~~m~~~-~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      +    +|+ + +++++++++++.++++.|.+++++.+||||+ +|+++|+||..||++.+..
T Consensus       156 ~----im~-~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          156 E----HMT-SEHLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             T----SCC-CSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred             H----HcC-CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHHHHHHhc
Confidence            8    586 6 8899999999999999999999999999998 8999999999999999875

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.35  E-value=2e-13  Score=136.01  Aligned_cols=177  Identities=10%  Similarity=0.092  Sum_probs=27.5

Q ss_pred             HhccCccccC-CCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHH
Q 018713           40 AFARIPVLSF-PNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA  118 (351)
Q Consensus        40 ~~~~~~v~~~-~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~  118 (351)
                      .+.+....++ |.   .+++++++++|+.+|++.|.+++++++||+|++..     .++++|+|+..|++..   .    
T Consensus        92 ~v~~V~~~e~gM~---~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~-----~g~lvGiVt~~Dl~~~---~----  156 (503)
T 1me8_A           92 MVHAVKNFKAGFV---VSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTP-----HGVLLGLVTQRDYPID---L----  156 (503)
T ss_dssp             HHHHHHTTTC----------------------------------------------------------------------
T ss_pred             HHhhhhhcccCcc---cCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCc-----CCeEEEEEEHHHHHhh---h----
Confidence            3444445555 65   58889999999999999999999999999987410     1289999999988731   0    


Q ss_pred             hhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcC
Q 018713          119 AAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEE  198 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~  198 (351)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (503)
T 1me8_A          157 --------------------------------------------------------------------------------  156 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713          199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (351)
Q Consensus       199 ~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~  278 (351)
                      .....+|.++|++.  .+++++++++++.+++++|.+++++.+||+|++ |+++|+||.+||++.+.....       ..
T Consensus       157 ~~~~~~V~diM~~~--~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~~~~-------~~  226 (503)
T 1me8_A          157 TQTETKVSDMMTPF--SKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD-QHLRYIVFRKDYDRSQVCHNE-------LV  226 (503)
T ss_dssp             --------------------------------------------------------------------CCC-------CB
T ss_pred             ccccCcHHHHhCCC--CCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEecHHHHhhhcccc-------hh
Confidence            01235789999933  348999999999999999999999999999984 899999999999988754321       01


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEE
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVG  330 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liG  330 (351)
                      .....+    +   .-..+.. ....+.++.|.+.+++.+.| +.+.|...|
T Consensus       227 d~~~~l----~---v~a~v~~-~~~~e~~~~l~e~gv~~l~V-d~~~g~~~~  269 (503)
T 1me8_A          227 DSQKRY----L---VGAGINT-RDFRERVPALVEAGADVLCI-DSSDGFSEW  269 (503)
T ss_dssp             CTTSCB----C---CEEEECS-SSHHHHHHHHHHHTCSEEEE-CCSCCCSHH
T ss_pred             cccccc----c---cccccCc-hhHHHHHHHHHhhhccceEE-ecccCcccc
Confidence            111121    1   1123444 56667788888889986544 432344333

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.35  E-value=3.7e-13  Score=137.70  Aligned_cols=159  Identities=13%  Similarity=0.087  Sum_probs=104.0

Q ss_pred             ccCccccCCCCCCCCcEEEcCCCCHHHHHHHHH-HcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713           42 ARIPVLSFPNVPGGRVIEIMADTTIPDAVKILS-ECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA  120 (351)
Q Consensus        42 ~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~-~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~  120 (351)
                      .+++++++|. ++++++++++++|+.|+++.|. +++++++||+|+++        +++|+|+..|++..+.........
T Consensus       451 ~~~~V~diM~-p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~--------~lvGiVt~~DL~~~l~~~~~~~~~  521 (632)
T 3org_A          451 PEMTAREIMH-PIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANG--------YLLGAISRKEIVDRLQHVLEDVPE  521 (632)
T ss_dssp             TTSBHHHHCB-CTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTC--------BBCCEESHHHHTTTTTTC------
T ss_pred             ccCcHHHHhh-cCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCC--------eEEEEEEHHHHHHHHHHHhhhccc
Confidence            6789999996 5578999999999999999999 79999999999743        899999999998543222110000


Q ss_pred             hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhh----
Q 018713          121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQ----  196 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~----  196 (351)
                      ...               .       .....    .                        .......+.+......    
T Consensus       522 ~~~---------------~-------~~~~~----~------------------------~~~~~l~~~~~~~~~~~~~~  551 (632)
T 3org_A          522 PIA---------------G-------HRTLV----L------------------------LDAADLSENIEGLVDETPSG  551 (632)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc---------------c-------cccee----c------------------------cCHHHHHhhcccCCCCCccc
Confidence            000               0       00000    0                        0000000000000000    


Q ss_pred             ----------cCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          197 ----------EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       197 ----------~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                                .......++.++|+    ++++++++++++.++++.|.+++++++||+ + +|+++|+||++|+++.+.
T Consensus       552 ~~~~~~e~~~~~~~~~~~v~~iMt----~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e-~G~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          552 EHSSKGKRTATVLEPTSSLVVPCD----VSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-E-RGKLVGIVEREDVAYGYS  624 (632)
T ss_dssp             -------------------CCSCC----CCCCEEETTCBHHHHHHHHHHTCCSEEEEE-E-TTEEEEEEEGGGTEECCC
T ss_pred             chhhhcccceEeeccccccchhhc----CCCceecCCCcHHHHHHHHHhcCCCEEEEE-E-CCEEEEEEehhhHHHHHh
Confidence                      00012235889999    569999999999999999999999999999 4 379999999999987764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.31  E-value=7.6e-13  Score=131.37  Aligned_cols=120  Identities=15%  Similarity=0.240  Sum_probs=89.8

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~  283 (351)
                      .++++|.    .+++++++++++.+++++|.+++++++||+|+ +++++|+||.+|++..   . .       ...++.+
T Consensus        90 ~~~~~m~----~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-~~~lvGiVt~rDL~~~---~-~-------~~~~v~d  153 (496)
T 4fxs_A           90 IFEAGVV----THPVTVRPEQTIADVMELTHYHGFAGFPVVTE-NNELVGIITGRDVRFV---T-D-------LTKSVAA  153 (496)
T ss_dssp             HCCC--C----BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS-SSBEEEEEEHHHHTTC---C-C-------TTSBGGG
T ss_pred             ccccccc----cCceEECCCCCHHHHHHHHHHcCCcEEEEEcc-CCEEEEEEEHHHHhhc---c-c-------CCCcHHH
Confidence            3456788    45899999999999999999999999999998 4899999999998511   1 1       3567888


Q ss_pred             cccCccC-CCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          284 LGLPFMS-SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       284 L~~~~m~-~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                          +|+ ..+++++++++++.++++.|.+++++.+||||+ +|+++|+||.+||++.....
T Consensus       154 ----iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~G~l~GiIT~~DIl~~~~~p  210 (496)
T 4fxs_A          154 ----VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVND-EFQLKGMITAKDFHKAESKP  210 (496)
T ss_dssp             ----TSEEGGGCCEEECC----CGGGTCC---CCCEEEECT-TSBCCEEECCC-----CCCT
T ss_pred             ----HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEeehHhHHHHhhccc
Confidence                585 236899999999999999999999999999998 99999999999999876544

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.26  E-value=4.7e-13  Score=133.29  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=0.4

Q ss_pred             hhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccccccc
Q 018713          209 IKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGL  286 (351)
Q Consensus       209 m~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~  286 (351)
                      |+    .+++++++++++.++++.|.+++++++||+|++  .++++|+||.+|++..  . .       ....++.+   
T Consensus       103 M~----~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~-~-------~~~~~V~d---  165 (503)
T 1me8_A          103 FV----VSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--L-T-------QTETKVSD---  165 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc----cCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--h-c-------cccCcHHH---
Confidence            77    458999999999999999999999999999872  1699999999999754  1 1       13567888   


Q ss_pred             CccCCCC--ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          287 PFMSSDE--VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       287 ~~m~~~~--v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                       +|+ ++  ++++++++++.+++++|.+++++.+||||+ +|+++|+||.+||++.+...
T Consensus       166 -iM~-~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          166 -MMT-PFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD-DQHLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             -----------------------------------------------------------C
T ss_pred             -HhC-CCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEecHHHHhhhcc
Confidence             586 55  899999999999999999999999999998 89999999999999987644

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.25  E-value=5.5e-12  Score=125.19  Aligned_cols=120  Identities=13%  Similarity=0.136  Sum_probs=89.1

Q ss_pred             CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      .++.++|.   .+++++++++|+.+|++.|.+++++++||+|+++        +++|+|+..|+..              
T Consensus        89 k~~~~~m~---~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~--------~lvGiVt~rDL~~--------------  143 (496)
T 4fxs_A           89 KIFEAGVV---THPVTVRPEQTIADVMELTHYHGFAGFPVVTENN--------ELVGIITGRDVRF--------------  143 (496)
T ss_dssp             HHCCC--C---BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSS--------BEEEEEEHHHHTT--------------
T ss_pred             cccccccc---cCceEECCCCCHHHHHHHHHHcCCcEEEEEccCC--------EEEEEEEHHHHhh--------------
Confidence            34456665   6888999999999999999999999999999753        8999999988761              


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                                ......
T Consensus       144 --------------------------------------------------------------------------~~~~~~  149 (496)
T 4fxs_A          144 --------------------------------------------------------------------------VTDLTK  149 (496)
T ss_dssp             --------------------------------------------------------------------------CCCTTS
T ss_pred             --------------------------------------------------------------------------cccCCC
Confidence                                                                                      112346


Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      ++.++|++.  .+++++++++++.+++++|.+++++.+||+|+ +|+++|+||.+|+++...
T Consensus       150 ~v~diM~p~--~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          150 SVAAVMTPK--ERLATVKEGATGAEVQEKMHKARVEKILVVND-EFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             BGGGTSEEG--GGCCEEECC----CGGGTCC---CCCEEEECT-TSBCCEEECCC-----CC
T ss_pred             cHHHHhcCC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEeehHhHHHHhhc
Confidence            789999842  35889999999999999999999999999998 489999999999988763

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.24  E-value=7.5e-13  Score=131.68  Aligned_cols=119  Identities=20%  Similarity=0.358  Sum_probs=7.2

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~  283 (351)
                      .+.++|.    ++++++.+++++.++++.|.+++++.+||+|++ ++++|+||.+|+++..    .       ...++.+
T Consensus        96 ~~~~iM~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~~----~-------~~~~v~~  159 (494)
T 1vrd_A           96 KTENGII----YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFEK----N-------LSKKIKD  159 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCc----cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhhc----C-------CCCcHHH
Confidence            3577888    559999999999999999999999999999974 7999999999997521    1       3457888


Q ss_pred             cccCccCCC--CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          284 LGLPFMSSD--EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       284 L~~~~m~~~--~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                          +|+ +  +++++++++++.+++++|.+++++.+||||+ +|+++|+||..||++.+...
T Consensus       160 ----im~-~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          160 ----LMT-PREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK-DNKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             -------------------------------------------------------CHHHHTCT
T ss_pred             ----HhC-CCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHhhhccc
Confidence                586 6  8999999999999999999999999999998 89999999999999998654

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.23  E-value=7.7e-13  Score=131.19  Aligned_cols=120  Identities=18%  Similarity=0.300  Sum_probs=3.6

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~  283 (351)
                      .++++|.    .+++++++++++.+++++|.+++++++||+| + ++++|+||.+|+....    .       ...++.+
T Consensus        89 ~~~~~m~----~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~-g~lvGIVt~rDl~~~~----~-------~~~~V~~  151 (490)
T 4avf_A           89 KHETAIV----RDPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q-GELVGIVTGRDLRVKP----N-------AGDTVAA  151 (490)
T ss_dssp             HCCC----------------------------------------------------------------------------
T ss_pred             ccccCcc----cCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEhHHhhhcc----c-------cCCcHHH
Confidence            3567788    4588999999999999999999999999999 3 6999999999985221    1       3557888


Q ss_pred             cccCccC-CCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713          284 LGLPFMS-SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE  345 (351)
Q Consensus       284 L~~~~m~-~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~  345 (351)
                          +|+ ..+++++++++++.+++++|.+++++.+||||+ +|+++|+||.+||++......
T Consensus       152 ----vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~~p~  209 (490)
T 4avf_A          152 ----IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE-NFYLRGLVTFRDIEKAKTYPL  209 (490)
T ss_dssp             ------------------------------------------------------------CTT
T ss_pred             ----HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHhhhhccCcc
Confidence                585 227999999999999999999999999999998 999999999999999865543

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.23  E-value=3.4e-10  Score=112.40  Aligned_cols=117  Identities=10%  Similarity=0.192  Sum_probs=101.2

Q ss_pred             cccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceec--CCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           46 VLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKI--PDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd--~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      +.++|.   .+++++++++|+.+|++.|.++++.++||+|  ++        ++++|+|+..|++..             
T Consensus        92 ~~~im~---~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~--------~~lvGivt~~Dl~~~-------------  147 (491)
T 1zfj_A           92 SENGVI---IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN--------RKLVGIITNRDMRFI-------------  147 (491)
T ss_dssp             HTTTTS---SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT--------CBEEEEEEHHHHHHC-------------
T ss_pred             HHhcCc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC--------CEEEEEEEHHHHhhh-------------
Confidence            466776   5788999999999999999999999999998  43        289999999998721             


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                                 .....
T Consensus       148 ---------------------------------------------------------------------------~~~~~  152 (491)
T 1zfj_A          148 ---------------------------------------------------------------------------SDYNA  152 (491)
T ss_dssp             ---------------------------------------------------------------------------SCSSS
T ss_pred             ---------------------------------------------------------------------------ccCCC
Confidence                                                                                       01346


Q ss_pred             chHhhhhccCCC-CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          204 TVRSIIKSYRWA-PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       204 ~V~dim~~~~~~-~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ++.++|+    + +++++++++++.++++.|.+++++.+||+|+ +|+++|++|.+|+++.+..
T Consensus       153 ~v~~im~----~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          153 PISEHMT----SEHLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             BTTTSCC----CSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred             cHHHHcC----CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHHHHHHhc
Confidence            7899998    4 6889999999999999999999999999998 4899999999999998864

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.21  E-value=8.6e-12  Score=123.67  Aligned_cols=119  Identities=13%  Similarity=0.158  Sum_probs=2.8

Q ss_pred             CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      ..+.++|.   .+++++++++|+.+|++.|.++++..+||+| ++        +++|+|+..|+...             
T Consensus        88 k~~~~~m~---~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g--------~lvGIVt~rDl~~~-------------  142 (490)
T 4avf_A           88 KKHETAIV---RDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QG--------ELVGIVTGRDLRVK-------------  142 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCcc---cCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CC--------EEEEEEEhHHhhhc-------------
Confidence            34667775   6788999999999999999999999999999 32        89999999887510             


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                                 .....
T Consensus       143 ---------------------------------------------------------------------------~~~~~  147 (490)
T 4avf_A          143 ---------------------------------------------------------------------------PNAGD  147 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------------------------------------------cccCC
Confidence                                                                                       01236


Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      +|.++|++.  .+++++++++++.+++++|.+++++.+||+|+ +|+++|+||.+|+++...
T Consensus       148 ~V~~vMtp~--~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          148 TVAAIMTPK--DKLVTAREGTPLEEMKAKLYENRIEKMLVVDE-NFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             --------------------------------------------------------------
T ss_pred             cHHHHhccC--CCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHhhhhcc
Confidence            789999832  35899999999999999999999999999998 489999999999998764

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.20  E-value=8.9e-12  Score=121.97  Aligned_cols=111  Identities=15%  Similarity=0.287  Sum_probs=0.0

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      .++++++|+.|+.||+++|.++++..+||+++...     .++++|||+..|+...                        
T Consensus       146 ~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~-----~~kLvGIvT~RD~rf~------------------------  196 (556)
T 4af0_A          146 TDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEP-----DSKLLGIVTGRDVQFQ------------------------  196 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCeEcCCCCCHHHHHHHHHHhCCCccccccccCc-----CCEEEEEEeccccccc------------------------
Confidence            56889999999999999999999999999986421     3489999998886510                        


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                       ....+|.++|+    
T Consensus       197 -----------------------------------------------------------------d~~~~V~evMT----  207 (556)
T 4af0_A          197 -----------------------------------------------------------------DAETPIKSVMT----  207 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------------------------------------------------------ccceEhhhhcc----
Confidence                                                                             12367899999    


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL  264 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l  264 (351)
                      .++++++++.++.+|.++|.++++..+||+|+ +++++|+||++|+.+..
T Consensus       208 ~~lvt~~~~~~leeA~~iL~~~kieklpVVd~-~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          208 TEVVTGSSPITLEKANSLLRETKKGKLPIVDS-NGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             --------------------------------------------------
T ss_pred             cceEEecCCCCHHHHHHHHHHccccceeEEcc-CCcEEEEEEechhhhhh
Confidence            45999999999999999999999999999998 48999999999998765

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.17  E-value=2.6e-12  Score=125.73  Aligned_cols=110  Identities=25%  Similarity=0.308  Sum_probs=0.4

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE  293 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~  293 (351)
                      +++++.|+.++.+++++|.+++++.+||+|++  +++++||||.+|+. +.    +       ...++++    +|+ ++
T Consensus       147 dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r-f~----d-------~~~~V~e----vMT-~~  209 (556)
T 4af0_A          147 DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ-FQ----D-------AETPIKS----VMT-TE  209 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc-cc----c-------cceEhhh----hcc-cc
Confidence            48899999999999999999999999999863  47999999999974 21    1       3568889    697 78


Q ss_pred             ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      +++++.++++.+|.++|.++++..+||||+ +++|+|+||.+|+.+.-..
T Consensus       210 lvt~~~~~~leeA~~iL~~~kieklpVVd~-~g~LvGlIT~kDi~k~~~~  258 (556)
T 4af0_A          210 VVTGSSPITLEKANSLLRETKKGKLPIVDS-NGHLVSLVARSDLLKNQNY  258 (556)
T ss_dssp             -------------------------------------------------C
T ss_pred             eEEecCCCCHHHHHHHHHHccccceeEEcc-CCcEEEEEEechhhhhhhC
Confidence            999999999999999999999999999999 9999999999999886543

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.16  E-value=2.3e-11  Score=120.94  Aligned_cols=120  Identities=16%  Similarity=0.248  Sum_probs=6.4

Q ss_pred             ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713           45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV  124 (351)
Q Consensus        45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~  124 (351)
                      .+.++|.   ++++++++++|+.+|++.|.++++..+||+|+++        +++|+|+..|++..              
T Consensus        96 ~~~~iM~---~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~--------~lvGivt~~Dl~~~--------------  150 (494)
T 1vrd_A           96 KTENGII---YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEG--------RLVGLLTNRDVRFE--------------  150 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCc---cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCC--------EEEEEEEHHHHHhh--------------
Confidence            4566775   5889999999999999999999999999998643        89999999887720              


Q ss_pred             ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713          125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~  204 (351)
                                                                                               . ....+
T Consensus       151 -------------------------------------------------------------------------~-~~~~~  156 (494)
T 1vrd_A          151 -------------------------------------------------------------------------K-NLSKK  156 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------------------------------------------------------------c-CCCCc
Confidence                                                                                     0 12357


Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      +.++|++.  .++.++++++++.++++.|.+++++.+||+|+ +|+++|+||..|+++.+..
T Consensus       157 v~~im~~~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          157 IKDLMTPR--EKLIVAPPDISLEKAKEILHQHRIEKLPLVSK-DNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             -------------------------------------------------------CHHHHTC
T ss_pred             HHHHhCCC--CCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHhhhcc
Confidence            88999841  26999999999999999999999999999998 4899999999999998754

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.07  E-value=1.3e-12  Score=130.62  Aligned_cols=121  Identities=15%  Similarity=0.187  Sum_probs=70.3

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v  281 (351)
                      ++.++|.    ++++++.+++++.+++++|.+++++.+||+|++  +++++|+||.+|+.....         .....++
T Consensus       109 ~~~~im~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~---------~~~~~~v  175 (514)
T 1jcn_A          109 NFEQGFI----TDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE---------KDHTTLL  175 (514)
T ss_dssp             TCCTTSC----SSCCCCCC-----------------CEESCC--------CCEECTTTTC--------------------
T ss_pred             hhhhccc----cCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh---------ccCCCCH
Confidence            4668888    458899999999999999999999999999872  279999999999865321         0134578


Q ss_pred             cccccCccCCC--CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          282 SDLGLPFMSSD--EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       282 ~~L~~~~m~~~--~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .+    +|+ +  +++++.+++++.+++++|.+++.+.+||||+ +|+++|+||.+||++.+..
T Consensus       176 ~~----vm~-~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~  233 (514)
T 1jcn_A          176 SE----VMT-PRIELVVAPAGVTLKEANEILQRSKKGKLPIVND-CDELVAIIARTDLKKNRDY  233 (514)
T ss_dssp             ----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS-SSCCC----CCCCSSCCCC
T ss_pred             HH----HhC-CCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC-CCeEEEEEEHHHHHHHhhC
Confidence            88    586 6  8999999999999999999999999999998 8999999999999877654

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.04  E-value=1.9e-11  Score=121.35  Aligned_cols=113  Identities=25%  Similarity=0.429  Sum_probs=1.4

Q ss_pred             HhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccc
Q 018713          206 RSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLG  285 (351)
Q Consensus       206 ~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~  285 (351)
                      .++|.    .+++++++++++.++++.|.+++++++||+|+  ++++|+|+.+|++.   .          ...++.+  
T Consensus        96 ~~~m~----~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~lvGivt~~Dl~~---~----------~~~~v~~--  154 (486)
T 2cu0_A           96 ERLIV----EDVITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAA---R----------EGKLVKE--  154 (486)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             hhccc----cCceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHhcc---C----------CCCCHHH--
Confidence            44677    45899999999999999999999999999986  58999999999975   1          2446788  


Q ss_pred             cCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          286 LPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       286 ~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                        +|. ++++++++++++.++++.|.+++++.+||||+ +|+++|+||.+||++.+..
T Consensus       155 --im~-~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde-~g~lvGiiT~~Dil~~~~~  208 (486)
T 2cu0_A          155 --LMT-KEVITVPESIEVEEALKIMIENRIDRLPVVDE-RGKLVGLITMSDLVARKKY  208 (486)
T ss_dssp             --------------------------------------------------------CC
T ss_pred             --Hcc-CCCeEECCcCcHHHHHHHHHHcCCCEEEEEec-CCeEEEEEEHHHHHHhhhc
Confidence              586 78889999999999999999999999999998 8999999999999998763

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.01  E-value=1.5e-10  Score=114.85  Aligned_cols=163  Identities=15%  Similarity=0.229  Sum_probs=22.9

Q ss_pred             cccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccc
Q 018713           46 VLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVG  125 (351)
Q Consensus        46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~  125 (351)
                      ..+.|.   .+++++++++|+.++++.|.++++..+||+|+ +        +++|+|+..|++.                
T Consensus        95 ~~~~m~---~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~--------~lvGivt~~Dl~~----------------  146 (486)
T 2cu0_A           95 AERLIV---EDVITIAPDETVDFALFLMEKHGIDGLPVVED-E--------KVVGIITKKDIAA----------------  146 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhccc---cCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-C--------EEEEEEEHHHhcc----------------
Confidence            355564   68899999999999999999999999999986 2        8999999888761                


Q ss_pred             cccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCch
Q 018713          126 TATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTV  205 (351)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V  205 (351)
                                                                                                ....++
T Consensus       147 --------------------------------------------------------------------------~~~~~v  152 (486)
T 2cu0_A          147 --------------------------------------------------------------------------REGKLV  152 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------CCCCCH
Confidence                                                                                      012467


Q ss_pred             HhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccc
Q 018713          206 RSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLG  285 (351)
Q Consensus       206 ~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~  285 (351)
                      .++|+    ++++++++++++.++++.|.+++++.+||+|+ +|+++|+||.+|+++.......       .......+ 
T Consensus       153 ~~im~----~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde-~g~lvGiiT~~Dil~~~~~~~~-------~~~~~g~~-  219 (486)
T 2cu0_A          153 KELMT----KEVITVPESIEVEEALKIMIENRIDRLPVVDE-RGKLVGLITMSDLVARKKYKNA-------VRDENGEL-  219 (486)
T ss_dssp             -----------------------------------------------------------CCTTC-------CBCTTSCB-
T ss_pred             HHHcc----CCCeEECCcCcHHHHHHHHHHcCCCEEEEEec-CCeEEEEEEHHHHHHhhhcccc-------ccccCCce-
Confidence            88898    45889999999999999999999999999998 4899999999999988632110       00001111 


Q ss_pred             cCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEE
Q 018713          286 LPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNV  332 (351)
Q Consensus       286 ~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiI  332 (351)
                         +. .  ..+..++  .+.+..|.+.+++.+ |++...|...+++
T Consensus       220 ---~v-~--~~~~~~~--~~~a~~l~~~gvd~l-vvdta~G~~~~~L  257 (486)
T 2cu0_A          220 ---LV-A--AAVSPFD--IKRAIELDKAGVDVI-VVDTAHAHNLKAI  257 (486)
T ss_dssp             ---CC-E--EEECTTC--HHHHHHHHHTTCSEE-EEECSCCCCHHHH
T ss_pred             ---ee-c--ceechhh--HHHHHHHHHhcCCce-EEEecCCcEeehh
Confidence               10 1  1233333  556778888898865 6664245554444

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.97  E-value=4.4e-11  Score=119.46  Aligned_cols=124  Identities=10%  Similarity=0.145  Sum_probs=67.7

Q ss_pred             ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713           45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV  124 (351)
Q Consensus        45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~  124 (351)
                      .+.++|.   ++++++.+++|+.+|++.|.+++++.+||+|++..     .++++|+|+..|+....             
T Consensus       109 ~~~~im~---~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-----~~~lvGiVt~~Dl~~~~-------------  167 (514)
T 1jcn_A          109 NFEQGFI---TDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTM-----GSKLVGIVTSRDIDFLA-------------  167 (514)
T ss_dssp             TCCTTSC---SSCCCCCC-----------------CEESCC-------------CCEECTTTTC----------------
T ss_pred             hhhhccc---cCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCc-----CCEEEEEEEHHHHHhhh-------------
Confidence            4667775   57889999999999999999999999999987310     02899999987765210             


Q ss_pred             ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713          125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~  204 (351)
                                                                                               ......+
T Consensus       168 -------------------------------------------------------------------------~~~~~~~  174 (514)
T 1jcn_A          168 -------------------------------------------------------------------------EKDHTTL  174 (514)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------------------------------------------------------------hccCCCC
Confidence                                                                                     0012357


Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      +.++|++.  .+++++++++++.++++.|.+++++.+||+|+ +|+++|+||++|+++.+.
T Consensus       175 v~~vm~~~--~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          175 LSEVMTPR--IELVVAPAGVTLKEANEILQRSKKGKLPIVND-CDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             ------CC--BCCCCEETTCCSTTTTTHHHHHTCSCCCEESS-SSCCC----CCCCSSCCC
T ss_pred             HHHHhCCC--CCCeEECCCCCHHHHHHHHHHcCCCcccEECC-CCeEEEEEEHHHHHHHhh
Confidence            88999841  16999999999999999999999999999998 489999999999987764

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.88  E-value=1.7e-09  Score=78.32  Aligned_cols=46  Identities=30%  Similarity=0.279  Sum_probs=41.9

Q ss_pred             CcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHH
Q 018713           56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILW  110 (351)
Q Consensus        56 ~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~  110 (351)
                      ++++++|++|+.+|++.|.++++.++||+|++         +++||+|..||+..
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~---------~lvGIvT~~Di~~~   46 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEGD---------EILGVVTERDILDK   46 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEETT---------EEEEEEEHHHHHHH
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEECC---------EEEEEEEHHHHHHH
Confidence            46899999999999999999999999999853         89999999999854

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.88  E-value=4.5e-09  Score=75.99  Aligned_cols=69  Identities=14%  Similarity=0.265  Sum_probs=55.6

Q ss_pred             cEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCceE
Q 018713          217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  296 (351)
Q Consensus       217 ~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v~~  296 (351)
                      ++++.+++++.+|+++|.+++++++||+|+  |+++|++|.+|+++.+.... .+    ....++++    +|+ +++++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~-~~----~~~~~V~~----iMt-~~~iT   69 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKG-KN----PKEVKVEE----IMT-KNPVK   69 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTT-CC----GGGCBGGG----TCE-ECTTC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcC-CC----cccCCHHH----hcC-CCCeE
Confidence            689999999999999999999999999985  59999999999987664322 11    24568889    697 66655


Q ss_pred             E
Q 018713          297 I  297 (351)
Q Consensus       297 V  297 (351)
                      |
T Consensus        70 V   70 (70)
T 3ghd_A           70 I   70 (70)
T ss_dssp             C
T ss_pred             C
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-08
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	6e-06
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	2e-08
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	3e-08
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	1e-07
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	0.002
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	2e-07
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	1e-06
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	9e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	3e-05
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	6e-05
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	6e-05
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	7e-05
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	0.001
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.002
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	0.003

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 7/148 (4%)

Query: 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSA 259
            KS     +I +          T   +      L    +R  P+ +         +T + 
Sbjct: 10  MKSHRCYDLIPTSSKLVVFD--TSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITD 67

Query: 260 VVQGLEGCKGRDWFDIIASQPISDLGLPF----MSSDEVITIQSNELILEAFKRMKDNNI 315
            +  L          I   +              S   ++ I  N  + +A   +  N I
Sbjct: 68  FINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKI 127

Query: 316 GGIPVVEGQQKKIVGNVSIRDI-RHLLL 342
             +PV++ +    +  ++ + I + L L
Sbjct: 128 HRLPVIDPESGNTLYILTHKRILKFLKL 155

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.7 bits (102), Expect = 6e-06
 Identities = 10/59 (16%), Positives = 30/59 (50%)

Query: 291 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN 349
           S +++   ++  + +AF  +  N +   P+ + +++  VG ++I D  ++L +    + 
Sbjct: 22  SSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL 80

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 16/142 (11%), Positives = 53/142 (37%), Gaps = 20/142 (14%)

Query: 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262
            TV+ +++  +    + +  DDS+ + +  ++   +  + +++                +
Sbjct: 2   KTVKHLLQE-KGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE--------------K 46

Query: 263 GLEGCKGRDWFDIIASQPISDLGLP--FMSSDEVITIQSNELILEAFKRMKDNNIGGIPV 320
            +     RD+                  + + +V  +  N    +    + +  +  +PV
Sbjct: 47  LVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPV 106

Query: 321 VEGQQKKIVGNVSIRDI-RHLL 341
           ++    K++G +SI D+ +  +
Sbjct: 107 LDD--GKVIGLLSIGDLVKDAI 126

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 279
                 ++ V+ +L++ R+ +VPII     D   Y+        + G      ++ ++  
Sbjct: 22  CQMTTPVIDVIQMLTQGRVSSVPII-----DENGYLINVYEAYDVLGLIKGGIYNDLSLS 76

Query: 280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-R 338
               L       + V T   N+ +      ++   +    VV+    ++VG +++ DI +
Sbjct: 77  VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILK 135

Query: 339 HLLL 342
           ++LL
Sbjct: 136 YILL 139

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 9/66 (13%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
             PI DL +  ++ D + + Q    +++  + +    +  +P+++ +   ++      D+
Sbjct: 5   KIPIGDLNI--ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDV 61

Query: 338 RHLLLK 343
             L+  
Sbjct: 62  LGLIKG 67

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 9/73 (12%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 41  FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLG 100
           F +IP+     +    +      T + D +++L++  + S P+         D     + 
Sbjct: 3   FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII--------DENGYLIN 54

Query: 101 IVDYSAIILWVLE 113
           + +   ++  +  
Sbjct: 55  VYEAYDVLGLIKG 67

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 25/146 (17%), Positives = 59/146 (40%), Gaps = 8/146 (5%)

Query: 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSA 259
           F S ++  + +   +A    V T   +   L +  ++R+  +P+++     +   I    
Sbjct: 6   FMSKSLEEL-QIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVV--DIYSKF 62

Query: 260 VVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIP 319
            V  L   K  +  D+  ++ +          + V+    +E +     R+ +  +  + 
Sbjct: 63  DVINLAAEKTYNNLDVSVTKALQ---HRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLV 119

Query: 320 VVEGQQKKIVGNVSIRDI-RHLLLKP 344
           VV+ +   + G VS+ DI + L+L  
Sbjct: 120 VVD-EHDVVKGIVSLSDILQALVLTG 144

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 20/140 (14%), Positives = 50/140 (35%), Gaps = 10/140 (7%)

Query: 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263
            V  ++          +    ++     L+    +R+VPI++     +   ++Q  ++  
Sbjct: 3   KVEDMMTR----HPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAA 57

Query: 264 LEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG 323
            E                 +  L  +   +V ++     + E+   M+ + IG +PVV  
Sbjct: 58  QESSL---QRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK 114

Query: 324 QQKKIVGNVSIRDIRHLLLK 343
               +VG ++  D   + + 
Sbjct: 115 --DVLVGIITDSDFVTIAIN 132

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 9e-06
 Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 18/152 (11%)

Query: 202 STTVRSIIKSYRWAPFLPVATDDSML--SVLLLLSKYRLRNVPII-EPGTPDIKNYITQS 258
            T    ++K  R  P L V T DSM    V  ++S+      P++    +  +  ++ + 
Sbjct: 2   KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRR 61

Query: 259 AVVQ-GLEGCKGRDWFDIIASQPISDLGLPFMSSD------------EVITIQSNELILE 305
            ++       K +D     +    ++   P                    T+     +  
Sbjct: 62  DLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEI 121

Query: 306 AFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
                +   +    V      +++G ++ +D+
Sbjct: 122 VVDIFRKLGLRQCLVTHN--GRLLGIITKKDV 151

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 20/143 (13%), Positives = 55/143 (38%), Gaps = 16/143 (11%)

Query: 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263
            V  I+ S     F  V  + ++   + ++++  L  + + +    D+     +S + + 
Sbjct: 4   RVEKIMNS----NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRF 59

Query: 264 LEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG 323
           +   K  D   I             +    +  ++S+  + +    + +N +    VV+ 
Sbjct: 60  IPRNKKPDEVPI-----------RLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD 108

Query: 324 QQKKIVGNVSIRDIRHLLLKPEL 346
              ++VG V++ D+   L +  +
Sbjct: 109 P-GRVVGIVTLTDLSRYLSRASI 130

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 19/162 (11%), Positives = 56/162 (34%), Gaps = 25/162 (15%)

Query: 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSA 259
           +K   +    +         V     + + L  L       +P+++    ++   + ++ 
Sbjct: 1   YKGVEIEPYYQR----YVSIVWEGTPLKAALKALLLSNSMALPVVD-SEGNLVGIVDETD 55

Query: 260 VVQGLEGCKGRDWFDIIASQPISDLGLPFMS-------------------SDEVITIQSN 300
           +++  E  +     ++ AS     +     +                   + +VI    +
Sbjct: 56  LLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPH 115

Query: 301 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 342
             + E   +M   +I  +PV+ G+   ++G +   D+  +L+
Sbjct: 116 MTVHEVALKMAKYSIEQLPVIRGE-GDLIGLIRDFDLLKVLV 156

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.3 bits (93), Expect = 6e-05
 Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 15/132 (11%)

Query: 220 VATDDSMLSVLLLLSKYRLRNVPIIEPGTP--------DIKNYITQSAVVQGLEGCKGRD 271
           V  D  +  ++  + +  +     +              +             +    R 
Sbjct: 17  VEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRS 76

Query: 272 WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGN 331
               + ++  S++    M   + + +  +  + EA K M DNNI  +PVV+ ++ +IVG+
Sbjct: 77  SMKRLIAKNASEI----ML--DPVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGD 129

Query: 332 VSIRDIRHLLLK 343
           ++  +I   L K
Sbjct: 130 LNSLEILLALWK 141

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 6/49 (12%), Positives = 14/49 (28%), Gaps = 2/49 (4%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 337
                   +     + +         +    V      K+VG V++ +I
Sbjct: 108 RIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM--GKLVGVVALAEI 154

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 278 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPV 320
             PI       M+   ++ ++ +  + EA + M + ++G + V
Sbjct: 4   KAPIKVY----MTKK-LLGVKPSTSVQEASRLMMEFDVGSLVV 41

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE--GQQKKIVGNVSIRDIRHLL 341
             +D  + +   + + + F+    +   GIP+ +      ++VG +S RDI  L 
Sbjct: 2   FITD-PVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLK 55

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 8/33 (24%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 289 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVV 321
           M++  V  +  +E +  A + M++++IG +P+ 
Sbjct: 7   MNAG-VTCVGEHETLTAAAQYMREHDIGALPIC 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.81
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.81
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.81
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.8
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.8
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.79
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.79
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.78
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.78
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.78
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.77
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.77
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.77
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.77
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.76
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.76
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.75
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.75
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.75
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.75
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.74
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.74
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.74
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.74
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.73
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.73
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.73
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.73
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.73
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.72
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.72
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.72
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.72
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.72
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.72
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.71
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.71
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.71
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.71
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.7
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.7
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.69
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.69
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.69
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.69
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.67
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.66
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.66
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.64
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.64
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.62
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.57

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=6.1e-20  Score=148.84  Aligned_cols=129  Identities=17%  Similarity=0.280  Sum_probs=112.5

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      .+|+++|.+.  +++.++.+++++.+|++.|.+++++++||+|+ +|+++|++|..|+++++..... ...+.....++.
T Consensus         2 ~tv~~~mip~--~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~-~~~~vGiit~~di~~~~~~~~~-~~~~~~~~~~v~   77 (132)
T d1yava3           2 ATVGQFMIEA--DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-SYRLHGLIGTNMIMNSIFGLER-IEFEKLDQITVE   77 (132)
T ss_dssp             CBHHHHSEEG--GGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEEHHHHHHHHBCSSS-BCGGGTTTSBHH
T ss_pred             CCHHHccccc--cceEEEcCCCCHHHHHHHHHhhCCCceEEeec-ccccccEEEcchhHHHhhcccc-cccccccccccc
Confidence            5789999866  78999999999999999999999999999998 4899999999999999876542 223444567888


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      +    +|. ++++++++++++.+++.+|.+++  .+||+|+ +|+++|+||.+||++.+.+
T Consensus        78 ~----~m~-~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~-~~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          78 E----VML-TDIPRLHINDPIMKGFGMVINNG--FVCVEND-EQVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             H----HSB-CSCCEEETTSBHHHHHHHTTTCS--EEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             c----ccc-ccccccccchhHHHHHHHHHhCC--EEEEEcc-CCEEEEEEEHHHHHHHHHh
Confidence            8    586 89999999999999999998764  5999998 9999999999999998764

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.81  E-value=1.3e-19  Score=145.91  Aligned_cols=123  Identities=23%  Similarity=0.385  Sum_probs=110.6

Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcc
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  281 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v  281 (351)
                      ...|+++|+    ++++++++++++.+|++.|.+++++++||+|+  ++++|++|..|+++.+.++..       ...++
T Consensus         3 ~~~V~d~m~----~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~-------~~~~v   69 (127)
T d2ef7a1           3 EEIVKEYMK----TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKS-------LETKA   69 (127)
T ss_dssp             CCBGGGTSB----CSCCEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCC-------TTCBG
T ss_pred             ccCHHHhCC----CCCeEECCcCcHHHHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhcc-------ccchh
Confidence            468999999    56999999999999999999999999999986  489999999999999876543       35577


Q ss_pred             cccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          282 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       282 ~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .+    +|. +++++|++++++.+|++.|.+++++++||+|+ +|+++|+||..||++++.+
T Consensus        70 ~~----~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          70 EE----FMT-ASLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             GG----TSE-ECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred             hh----hhh-hhccccccccchhHHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHHHh
Confidence            88    576 88999999999999999999999999999998 8999999999999998753

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=3.5e-19  Score=144.34  Aligned_cols=124  Identities=18%  Similarity=0.291  Sum_probs=110.2

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      .+|+++|+    ++++++++++++.+|++.|.+++++++||+|+ +|+++|+||..|+++.+..+...      ...+++
T Consensus         5 ~pV~~im~----~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~di~~~~~~~~~~------~~~~v~   73 (132)
T d2yzia1           5 APIKVYMT----KKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVIVPGLP------YDIPVE   73 (132)
T ss_dssp             SBGGGTCB----CCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTCCC------TTSBGG
T ss_pred             CcHHHHcC----CCCeEECCcCcHHHHHHHHHHcCCcEEEEecc-cceeeeeeeHHHHHHHHhhccCc------cceeEe
Confidence            58999999    66999999999999999999999999999998 48999999999999887554321      456788


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      +    +|. ++++++++++++.++++.|.+++++++||+++  |+++|+||.+||++++.+.
T Consensus        74 ~----im~-~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~--~~~vGivt~~Dil~a~~~~  128 (132)
T d2yzia1          74 R----IMT-RNLITANVNTPLGEVLRKMAEHRIKHILIEEE--GKIVGIFTLSDLLEASRRR  128 (132)
T ss_dssp             G----TCB-CSCCEEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHCC
T ss_pred             e----ccc-ccccccCcchHHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHH
Confidence            8    586 88999999999999999999999999998765  9999999999999987653

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=7.7e-20  Score=146.44  Aligned_cols=122  Identities=20%  Similarity=0.314  Sum_probs=104.9

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      ++++|+|+    ++++++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|+++....+.. .    .....++
T Consensus         1 tt~~diM~----~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~~~Giit~~Di~~~~~~~~~-~----~~~~~v~   70 (123)
T d1y5ha3           1 TTARDIMN----AGVTCVGEHETLTAAAQYMREHDIGALPICGD-DDRLHGMLTDRDIVIKGLAAGL-D----PNTATAG   70 (123)
T ss_dssp             CCHHHHSE----ETCCCEETTSBHHHHHHHHHHHTCSEEEEECG-GGBEEEEEEHHHHHHTTGGGTC-C----TTTSBHH
T ss_pred             CCHHHhcC----CCCcEECCcCcHHHHHHHHHHcCCCceEEEec-cchhhhhhhhhhHhhhhhhcCC-C----cccceEE
Confidence            47899999    45999999999999999999999999999988 4899999999999875533221 0    1344566


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l  341 (351)
                      +    +|. ++++++++++++.+|++.|.+++++++||+|+  |+++|+||..||++.+
T Consensus        71 ~----im~-~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          71 E----LAR-DSIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHL  122 (123)
T ss_dssp             H----HHT-TCCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTC
T ss_pred             E----Eee-ccceeeeecchHHHHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHhhC
Confidence            7    586 88999999999999999999999999999986  8999999999999864

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.80  E-value=2e-19  Score=147.65  Aligned_cols=126  Identities=13%  Similarity=0.264  Sum_probs=110.2

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      .+|+++|+    +++.++++++++.+|++.|.+++++++||+|+ +|+++|++|.+|+++.+.....     .....+++
T Consensus         3 m~v~dim~----~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~-~~~~~Giit~~di~~~~~~~~~-----~~~~~~v~   72 (142)
T d1pvma4           3 MRVEKIMN----SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPRNK-----KPDEVPIR   72 (142)
T ss_dssp             CBGGGTSB----TTCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHTGGGCC-----CGGGSBGG
T ss_pred             EEHHHhCC----CCCcEECCcCcHHHHHHHHHHCCCceEeeecc-CCcccceEEeechhhhhhhhcc-----cccccccc
Confidence            57899999    55999999999999999999999999999998 4899999999999887643221     11355788


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      +    +|. ++++++++++++.+|++.|.+++++++||+|+ +|+++|+||..||++.+.+.
T Consensus        73 ~----im~-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~l~Giit~~Dil~~l~~~  128 (142)
T d1pvma4          73 L----VMR-KPIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYLSRA  128 (142)
T ss_dssp             G----TSB-SSCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTSCHH
T ss_pred             c----ccc-cccccccchhhHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHHHHhhh
Confidence            8    586 89999999999999999999999999999998 89999999999999977543

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.79  E-value=1.1e-19  Score=148.69  Aligned_cols=132  Identities=16%  Similarity=0.220  Sum_probs=113.1

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      .+|+++|+    +++.++++++++.+|++.|.+++++++||+|+ +++++|+++..|+++.+...............+++
T Consensus         2 ~~V~~iMt----~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~-~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~   76 (141)
T d3ddja1           2 FPVKVFMS----TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVK   76 (141)
T ss_dssp             CBHHHHSB----CSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHH
T ss_pred             EeeHHhCc----CCCeEEcCcCcHHHHHHHHHHcCCCeeecccc-cCccccccccccchhhhhccccccccccccCCCHH
Confidence            47999999    55999999999999999999999999999998 48999999999999887543211111223467788


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCcc
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE  345 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~  345 (351)
                      +    +|. ++++++++++++.++++.|.+++.+++||+|+ +|+++|+||.+||++.+.+..
T Consensus        77 ~----im~-~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~-~~~~iGiIt~~Dil~~l~~~~  133 (141)
T d3ddja1          77 D----VMV-TNLVTIDELASVNRAAAEMIVKRIGSLLILNK-DNTIRGIITERDLLIALHHIL  133 (141)
T ss_dssp             H----HSB-CCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHH
T ss_pred             H----HhC-cccccccccchhhHHHHHHHHcCCCEEEEEcc-CCEEEEEEEHHHHHHHHHHHH
Confidence            8    686 89999999999999999999999999999998 899999999999999886543

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.79  E-value=2.2e-19  Score=146.86  Aligned_cols=129  Identities=18%  Similarity=0.311  Sum_probs=109.0

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch-hh-hhccCc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-FD-IIASQP  280 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~-l~-~l~~~~  280 (351)
                      .+|+|+|+    +++.++++++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++++........ .. .....+
T Consensus         2 i~v~diM~----~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~   76 (139)
T d2o16a3           2 IKVEDMMT----RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETP   76 (139)
T ss_dssp             CBGGGTSE----ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC---------CCCB
T ss_pred             EEHHHhCc----CCCeEECCcCCHHHHHHHHHHcCCCeeeeecc-cccccccccHHHHHHHHHhhhhhhhcccccccccc
Confidence            46899999    45999999999999999999999999999998 4899999999999988865422111 11 123567


Q ss_pred             ccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      +.+    +|+ +++++|++++++.+|+++|.+++++++||+|+  |+++|+||..||++++.+
T Consensus        77 v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          77 LFE----VMH-TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             HHH----HSC-SCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHH
T ss_pred             hhH----hhc-cccccccccchHHHHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence            888    686 89999999999999999999999999999996  899999999999998754

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.78  E-value=9.4e-19  Score=139.42  Aligned_cols=119  Identities=18%  Similarity=0.212  Sum_probs=106.1

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~  283 (351)
                      .|+++|+    +++.++++++++.+|++.|.+++++.+||+++  |+++|+||.+|+++.+..+..      +...++.+
T Consensus         1 kV~diM~----~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~------~~~~~v~~   68 (120)
T d1pbja3           1 RVEDVMV----TDVDTIDITASLEDVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDD------LAEVKVWE   68 (120)
T ss_dssp             CHHHHCB----CSCCEEETTCBHHHHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCC------TTTSBHHH
T ss_pred             ChHHhCC----CCCeEECCcCcHHHHHHHHHHcCceEEEEEeC--CcEEEEEEeeecccccccccc------ccceeEee
Confidence            4789999    56999999999999999999999999999975  599999999999998876543      24567888


Q ss_pred             cccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713          284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (351)
Q Consensus       284 L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l  341 (351)
                          +|+ ++++++++++++.+|++.|.+++++++||+++  |+++|+||..||+++.
T Consensus        69 ----~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~--~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          69 ----VME-RDLVTISPRATIKEAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAK  119 (120)
T ss_dssp             ----HCB-CGGGEECTTSCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             ----ecc-cccccccchhHHHHHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHhcC
Confidence                586 89999999999999999999999999999875  8999999999999864

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=1.9e-19  Score=144.04  Aligned_cols=118  Identities=18%  Similarity=0.313  Sum_probs=87.8

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~  283 (351)
                      +|+++|+    ++++++++++++.+|++.|.+++++++||+|+ +|+++|+||.+|++...            ...++.+
T Consensus         2 ~v~diM~----~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~G~it~~dl~~~~------------~~~~~~~   64 (122)
T d2yzqa2           2 RVKTIMT----QNPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNP------------DEEQLAM   64 (122)
T ss_dssp             BHHHHSE----ESCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC----------------------C
T ss_pred             CcccccC----CCCEEECCcCcHHHHHHHHHHcCCcEEEEEec-cccchhhhhcchhhhhh------------cccchhh
Confidence            6899999    45999999999999999999999999999998 48999999999987543            2346677


Q ss_pred             cccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       284 L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                          +|. +++++|++++++.+++..|.+++++++||+|+ +|+++|+||.+||++.+.+.
T Consensus        65 ----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~liGiit~~dil~~~~~~  119 (122)
T d2yzqa2          65 ----LVK-RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAK  119 (122)
T ss_dssp             ----CCB-SCCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTT
T ss_pred             ----ccc-cceeecchhhHHHHHHHHHHHcCcEEEEEEeC-CCEEEEEEEHHHHHHHHHhH
Confidence                576 88999999999999999999999999999998 99999999999999876543

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=3.5e-19  Score=148.14  Aligned_cols=130  Identities=15%  Similarity=0.242  Sum_probs=107.6

Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch--------
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--------  272 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~--------  272 (351)
                      ...+|.++|.    ++++++++++++.+|++.|.+++++++||+|+ +|+++|+||..|+++.+........        
T Consensus         2 ~~~~v~~~m~----r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~-~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~   76 (156)
T d2yzqa1           2 KGVEIEPYYQ----RYVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLLRDSEIVRIMKSTELAASSE   76 (156)
T ss_dssp             GGCBSTTTSB----SCCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGGGCGGGCC------------
T ss_pred             CCCCHHHHhc----CCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC-CCCceeEEeeeechhhhcccccccccccccchh
Confidence            3578899999    66999999999999999999999999999998 4899999999999765432210000        


Q ss_pred             ----------------hhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHH
Q 018713          273 ----------------FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRD  336 (351)
Q Consensus       273 ----------------l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~D  336 (351)
                                      .......++.+    +|+ +++.+|.+++++.++++.|.+++++++||+|+ +|+++|+||.+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~----~m~-~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~lvGivt~~D  150 (156)
T d2yzqa1          77 EEWILESHPTLLFEKFELQLPNKPVAE----IMT-RDVIVATPHMTVHEVALKMAKYSIEQLPVIRG-EGDLIGLIRDFD  150 (156)
T ss_dssp             --------------------CCCBGGG----TCB-SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET-TTEEEEEEEHHH
T ss_pred             hhhhhhhhhhhhHHHhhhcccCCEeeh----hcc-cCceEECcccccHHHHHHHHHcCeeEEEEEeC-CCEEEEEEEHHH
Confidence                            00123455666    586 88999999999999999999999999999998 899999999999


Q ss_pred             HHHHh
Q 018713          337 IRHLL  341 (351)
Q Consensus       337 Il~~l  341 (351)
                      |++++
T Consensus       151 il~~l  155 (156)
T d2yzqa1         151 LLKVL  155 (156)
T ss_dssp             HGGGG
T ss_pred             HHHHh
Confidence            99876

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.77  E-value=2.6e-18  Score=138.18  Aligned_cols=124  Identities=13%  Similarity=0.252  Sum_probs=106.1

Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      .+|+++|+.. .++++++++++++.+|++.|.+++++++||+++  ++++|++|.+|+++.+.....     .....+++
T Consensus         2 ~tV~dim~~k-~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~~-----~~~~~~v~   73 (127)
T d2rc3a1           2 KTVKHLLQEK-GHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLDK-----PVKDTQVK   73 (127)
T ss_dssp             CBHHHHHHHH-CCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSSS-----CGGGSBGG
T ss_pred             ccHHHHHccC-CCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhcc-----cccceeEe
Confidence            3688998742 146899999999999999999999999999985  599999999999887643321     11456788


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l  341 (351)
                      +    +|+ ++++++.+++++.+|+++|.+++++++||+|+  |+++|+||..||++.+
T Consensus        74 ~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          74 E----IMT-RQVAYVDLNNTNEDCMALITEMRVRHLPVLDD--GKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             G----TSB-CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             e----ecc-ceeEEeccCccHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            8    686 89999999999999999999999999999986  8999999999999875

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.77  E-value=8.1e-19  Score=141.31  Aligned_cols=117  Identities=15%  Similarity=0.336  Sum_probs=104.1

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~  278 (351)
                      +++.+|+    .+++++++++++.+|++.|.++     +++.+||+|++ ++++|+++.++++..-            ..
T Consensus         2 taG~iM~----~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~~~------------~~   64 (127)
T d2ouxa2           2 TAGAIMT----TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVND------------DD   64 (127)
T ss_dssp             BHHHHCB----SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSC------------TT
T ss_pred             ChhHhCC----CCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeecccccc------------cc
Confidence            6789999    5599999999999999999876     47899999984 8999999998885332            35


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .++.+    +|. ++++++++++++.+|+++|.+++++.+||||+ +|+++|+||..||++++.+
T Consensus        65 ~~v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~-~g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2          65 TLIAD----ILN-ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             SBHHH----HSB-SCCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             EEhhh----hcc-CCCccCCCCCCHHHHHHHHHHhCCEEEEEEeC-CCEEEEEEEHHHHHHHHHH
Confidence            67888    697 89999999999999999999999999999998 8999999999999998754

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=2.5e-19  Score=148.98  Aligned_cols=155  Identities=15%  Similarity=0.215  Sum_probs=109.1

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA  120 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~  120 (351)
                      |.++++.++|.   ++++++.+++++.+|++.|.+++++++||+|+++        +++|+++..|++............
T Consensus         1 ~~~~~v~~~m~---r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~--------~lvG~it~~Dl~~~~~~~~~~~~~   69 (156)
T d2yzqa1           1 YKGVEIEPYYQ---RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEG--------NLVGIVDETDLLRDSEIVRIMKST   69 (156)
T ss_dssp             GGGCBSTTTSB---SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTS--------CEEEEEEGGGGGGCGGGCC-----
T ss_pred             CCCCCHHHHhc---CCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCC--------CceeEEeeeechhhhccccccccc
Confidence            56889999997   7899999999999999999999999999998754        899999999987432111100000


Q ss_pred             hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713          121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF  200 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~  200 (351)
                      ..                      .......                       ..      ............  ....
T Consensus        70 ~~----------------------~~~~~~~-----------------------~~------~~~~~~~~~~~~--~~~~   96 (156)
T d2yzqa1          70 EL----------------------AASSEEE-----------------------WI------LESHPTLLFEKF--ELQL   96 (156)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc----------------------ccchhhh-----------------------hh------hhhhhhhhHHHh--hhcc
Confidence            00                      0000000                       00      000000000011  1235


Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL  264 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l  264 (351)
                      ...+++++|+    .++.++.+++++.++++.|.+++++++||+|+ +|+++|+||++||++++
T Consensus        97 ~~~~v~~~m~----~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          97 PNKPVAEIMT----RDVIVATPHMTVHEVALKMAKYSIEQLPVIRG-EGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             CCCBGGGTCB----SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET-TTEEEEEEEHHHHGGGG
T ss_pred             cCCEeehhcc----cCceEECcccccHHHHHHHHHcCeeEEEEEeC-CCEEEEEEEHHHHHHHh
Confidence            5678999999    55999999999999999999999999999998 48999999999999876

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=2.3e-19  Score=149.77  Aligned_cols=152  Identities=11%  Similarity=0.136  Sum_probs=116.1

Q ss_pred             HHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhh
Q 018713           36 TLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA  115 (351)
Q Consensus        36 ~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~  115 (351)
                      ..+.+|...++.|+|. +..+++++++++|+.+|++.|.++++.++||++++.+       +++|+++..|++.++....
T Consensus         5 ~~~~~l~~~t~~Dlm~-~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~-------~~vG~is~~Dl~~~~~~~~   76 (159)
T d2v8qe2           5 VYTTFMKSHRCYDLIP-TSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQ-------SFVGMLTITDFINILHRYY   76 (159)
T ss_dssp             HHHHHHHHSBGGGGSC-SEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTT-------EEEEEEEHHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEeECC-CCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCC-------cEEEEEEHHHHHHHHHhcc
Confidence            3567889999999985 4578999999999999999999999999999987643       8999999999998766543


Q ss_pred             HHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhh
Q 018713          116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL  195 (351)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~  195 (351)
                      .......                                                       ...     ......    
T Consensus        77 ~~~~~~~-------------------------------------------------------~~~-----~~~~~~----   92 (159)
T d2v8qe2          77 KSALVQI-------------------------------------------------------YEL-----EEHKIE----   92 (159)
T ss_dssp             HHHTTTC-------------------------------------------------------CCG-----GGCBHH----
T ss_pred             ccccchh-------------------------------------------------------hhh-----hhhhcc----
Confidence            2221000                                                       000     000000    


Q ss_pred             hcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       196 ~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                          .....+.++|.    .+++++++++++.+|++.|.+++++++||+|+++|+++|+||++||++++..+
T Consensus        93 ----~~~~~~~~~~~----~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~  156 (159)
T d2v8qe2          93 ----TWREVYLQDSF----KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF  156 (159)
T ss_dssp             ----HHHHHHSSSSC----CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHH
T ss_pred             ----cccceeeeeec----cceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHH
Confidence                00123345566    66899999999999999999999999999986568999999999999998643

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=2.6e-18  Score=139.11  Aligned_cols=125  Identities=18%  Similarity=0.256  Sum_probs=108.1

Q ss_pred             cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713           43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF  122 (351)
Q Consensus        43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~  122 (351)
                      +.||+++|+   ++++++++++|+.+|++.|.+++++++||+|+++        +++|+++..||+.++...        
T Consensus         4 ~~pV~~im~---~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~--------~~~Giit~~di~~~~~~~--------   64 (132)
T d2yzia1           4 KAPIKVYMT---KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDG--------NVVGFFTKSDIIRRVIVP--------   64 (132)
T ss_dssp             TSBGGGTCB---CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS--------CEEEEEEHHHHHHHTTTT--------
T ss_pred             CCcHHHHcC---CCCeEECCcCcHHHHHHHHHHcCCcEEEEecccc--------eeeeeeeHHHHHHHHhhc--------
Confidence            469999997   7899999999999999999999999999999764        899999999998542111        


Q ss_pred             ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713          123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS  202 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~  202 (351)
                                                                                                 .....
T Consensus        65 ---------------------------------------------------------------------------~~~~~   69 (132)
T d2yzia1          65 ---------------------------------------------------------------------------GLPYD   69 (132)
T ss_dssp             ---------------------------------------------------------------------------CCCTT
T ss_pred             ---------------------------------------------------------------------------cCccc
Confidence                                                                                       22345


Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                      .+++++|.    +++.++++++++.++++.|.+++++++||+++  |+++|+||.+|+++++.+.
T Consensus        70 ~~v~~im~----~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~--~~~vGivt~~Dil~a~~~~  128 (132)
T d2yzia1          70 IPVERIMT----RNLITANVNTPLGEVLRKMAEHRIKHILIEEE--GKIVGIFTLSDLLEASRRR  128 (132)
T ss_dssp             SBGGGTCB----CSCCEEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHCC
T ss_pred             eeEeeccc----ccccccCcchHHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHHH
Confidence            78999999    56999999999999999999999999998865  5999999999999998643

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=1.7e-18  Score=138.16  Aligned_cols=117  Identities=14%  Similarity=0.223  Sum_probs=105.1

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~  283 (351)
                      .|+++|+    +++.++++++++.+|++.|.+++.+++||+|+ +|+++|+++..|++++.            ...++.+
T Consensus         2 ~v~~~m~----~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~-~~~~~Gii~~~dl~~~~------------~~~~v~~   64 (121)
T d1vr9a3           2 KVKKWVT----QDFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLD------------LDSSVFN   64 (121)
T ss_dssp             BGGGGCB----SCSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTSC------------TTSBSGG
T ss_pred             Cchhhhc----CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC-CceeEEEeehhhhhhhh------------ccccccc
Confidence            5789999    55999999999999999999999999999987 48999999999996542            3457777


Q ss_pred             cccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          284 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       284 L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                          +|. .+++++++++++.++++.|.+++...+||+|+ +|+++|+||..||++++.+
T Consensus        65 ----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde-~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          65 ----KVS-LPDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             ----GCB-CTTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             ----ccc-CccEEECCCCCHHHHHHHHHhcCceeeeeECC-CCeEEEEEEHHHHHHHHHH
Confidence                475 78889999999999999999999999999999 9999999999999998764

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=7.5e-19  Score=140.56  Aligned_cols=122  Identities=18%  Similarity=0.262  Sum_probs=103.4

Q ss_pred             CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      ++++++|.   ++++++.+++|+.+|++.|.+++++++||+|+++        +++|+++..||+.+.+..         
T Consensus         1 tt~~diM~---~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~--------~~~Giit~~Di~~~~~~~---------   60 (123)
T d1y5ha3           1 TTARDIMN---AGVTCVGEHETLTAAAQYMREHDIGALPICGDDD--------RLHGMLTDRDIVIKGLAA---------   60 (123)
T ss_dssp             CCHHHHSE---ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGG--------BEEEEEEHHHHHHTTGGG---------
T ss_pred             CCHHHhcC---CCCcEECCcCcHHHHHHHHHHcCCCceEEEeccc--------hhhhhhhhhhHhhhhhhc---------
Confidence            46678886   6899999999999999999999999999998753        899999999988432111         


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                               .......
T Consensus        61 -------------------------------------------------------------------------~~~~~~~   67 (123)
T d1y5ha3          61 -------------------------------------------------------------------------GLDPNTA   67 (123)
T ss_dssp             -------------------------------------------------------------------------TCCTTTS
T ss_pred             -------------------------------------------------------------------------CCCcccc
Confidence                                                                                     0123446


Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL  264 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l  264 (351)
                      .++++|+    +++.++++++++.+|++.|.+++++++||+|+  |+++|+||+.||++++
T Consensus        68 ~v~~im~----~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          68 TAGELAR----DSIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHL  122 (123)
T ss_dssp             BHHHHHT----TCCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTC
T ss_pred             eEEEEee----ccceeeeecchHHHHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHhhC
Confidence            7899999    66999999999999999999999999999985  5899999999999865

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.75  E-value=4.2e-18  Score=136.92  Aligned_cols=125  Identities=18%  Similarity=0.349  Sum_probs=108.2

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA  120 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~  120 (351)
                      |++..|+++|.   ++++++++++|+.+|++.|.++++..+||+|++         +++|+++..|++.++..       
T Consensus         1 l~~~~V~d~m~---~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~---------~~~Givt~~dl~~~~~~-------   61 (127)
T d2ef7a1           1 MEEEIVKEYMK---TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN---------KPVGIITERDIVKAIGK-------   61 (127)
T ss_dssp             CCCCBGGGTSB---CSCCEEETTCBHHHHHHHHHHHTCSEEEEEETT---------EEEEEEEHHHHHHHHHT-------
T ss_pred             CCccCHHHhCC---CCCeEECCcCcHHHHHHHHHHcCCceEEeeccc---------chhhhcchhHHHHHHHh-------
Confidence            35678899997   689999999999999999999999999999853         79999999999854321       


Q ss_pred             hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713          121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF  200 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~  200 (351)
                                                                                                   ...
T Consensus        62 -----------------------------------------------------------------------------~~~   64 (127)
T d2ef7a1          62 -----------------------------------------------------------------------------GKS   64 (127)
T ss_dssp             -----------------------------------------------------------------------------TCC
T ss_pred             -----------------------------------------------------------------------------hcc
Confidence                                                                                         123


Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ...++.++|.    +++.++++++++.++++.|.+++++++||+|+ +|+++|+||..|+++++.+
T Consensus        65 ~~~~v~~~~~----~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          65 LETKAEEFMT----ASLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             TTCBGGGTSE----ECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred             ccchhhhhhh----hhccccccccchhHHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHHHh
Confidence            3467899998    55999999999999999999999999999998 4899999999999998853

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.75  E-value=3e-18  Score=138.97  Aligned_cols=127  Identities=19%  Similarity=0.286  Sum_probs=108.8

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCch----hhhhccC
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW----FDIIASQ  279 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~----l~~l~~~  279 (351)
                      +|+++|.+    ++.++++++++.+|++.|.+++++++||+|+   +++|+++..++++++........    ...+...
T Consensus         2 ~V~~lM~~----~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2           2 NIETLMIK----NPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SGGGTCEE----SCCEECTTSBHHHHHHHTTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             EeeEEeeC----CCeEECCCCcHHHHHHHHHHhCCeEEEEEec---ceeceeeccchhhhhccccccchhhhhccccccC
Confidence            68999994    4889999999999999999999999999964   69999999999988854432111    1224567


Q ss_pred             cccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          280 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       280 ~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      ++++    +|. +++.++++++++.+|+++|.+++++++||+|+ +|+++|+||.+||++++.+
T Consensus        75 ~v~~----im~-~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          75 PIID----YMT-PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI-NDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             BGGG----TSE-ESCCCEETTSCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHGGGGGG
T ss_pred             CHHH----HhC-CccceEEeccccchhhhhhhhcceeEEEEEeC-CCEEEEEEEHHHHHHHHHH
Confidence            7888    586 89999999999999999999999999999998 8999999999999998865

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.75  E-value=3.8e-18  Score=139.33  Aligned_cols=131  Identities=15%  Similarity=0.199  Sum_probs=108.1

Q ss_pred             CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      ++++++|.   ++++++++++|+.+|++.|.+++++++||+|+++        +++|+++..|++.++.......     
T Consensus         2 i~v~diM~---~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~--------~~~Giit~~dl~~~~~~~~~~~-----   65 (139)
T d2o16a3           2 IKVEDMMT---RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANK--------KLLGIVSQRDLLAAQESSLQRS-----   65 (139)
T ss_dssp             CBGGGTSE---ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC--------BEEEEEEHHHHHHHHHHHCC-------
T ss_pred             EEHHHhCc---CCCeEECCcCCHHHHHHHHHHcCCCeeeeecccc--------cccccccHHHHHHHHHhhhhhh-----
Confidence            56889997   6889999999999999999999999999998764        8999999999996654432111     


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                            ..........
T Consensus        66 ----------------------------------------------------------------------~~~~~~~~~~   75 (139)
T d2o16a3          66 ----------------------------------------------------------------------AQGDSLAFET   75 (139)
T ss_dssp             -----------------------------------------------------------------------------CCC
T ss_pred             ----------------------------------------------------------------------hccccccccc
Confidence                                                                                  0000224567


Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ++.++|+    +++.++++++++.+|++.|.+++++++||+|+  |+++|+||.+||++++.+
T Consensus        76 ~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          76 PLFEVMH----TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             BHHHHSC----SCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHH
T ss_pred             chhHhhc----cccccccccchHHHHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence            8999999    66999999999999999999999999999985  599999999999998853

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.74  E-value=2e-18  Score=141.06  Aligned_cols=130  Identities=18%  Similarity=0.262  Sum_probs=109.9

Q ss_pred             CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      +||+++|+   .+++++++++|+.+|++.|.+++++++||+|+++        +++|+++..|++..+.........   
T Consensus         2 ~~V~~iMt---~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~--------~~~g~i~~~di~~~~~~~~~~~~~---   67 (141)
T d3ddja1           2 FPVKVFMS---TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDN--------KVVGIVTVVNAIKQLAKAVDKLDP---   67 (141)
T ss_dssp             CBHHHHSB---CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTS--------CEEEEEEHHHHHHHHHHHHHHTCT---
T ss_pred             EeeHHhCc---CCCeEEcCcCcHHHHHHHHHHcCCCeeecccccC--------ccccccccccchhhhhcccccccc---
Confidence            58899997   5799999999999999999999999999999764        799999999998665443221100   


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                                ......
T Consensus        68 --------------------------------------------------------------------------~~~~~~   73 (141)
T d3ddja1          68 --------------------------------------------------------------------------DYFYGK   73 (141)
T ss_dssp             --------------------------------------------------------------------------HHHHTC
T ss_pred             --------------------------------------------------------------------------ccccCC
Confidence                                                                                      012346


Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      +++++|+    ++++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+.+
T Consensus        74 ~v~~im~----~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~-~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          74 VVKDVMV----TNLVTIDELASVNRAAAEMIVKRIGSLLILNK-DNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             BHHHHSB----CCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred             CHHHHhC----cccccccccchhhHHHHHHHHcCCCEEEEEcc-CCEEEEEEEHHHHHHHHHH
Confidence            8999999    56999999999999999999999999999998 4899999999999998854

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.74  E-value=1.6e-17  Score=133.34  Aligned_cols=115  Identities=20%  Similarity=0.340  Sum_probs=97.3

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCCc
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  294 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~-~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~v  294 (351)
                      +++++++++++.+|+++|.+++++++||+|+. +++++|+||.+|+++....           ..+..+.   .|. .++
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~-----------~~~~~~~---~~~-~~~   70 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDY-----------NAPISEH---MTS-EHL   70 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCS-----------SSBTTTS---CCC-SCC
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhcc-----------CCceeee---eec-cce
Confidence            36799999999999999999999999999862 4789999999999765432           2223331   343 788


Q ss_pred             eEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCccc
Q 018713          295 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL  346 (351)
Q Consensus       295 ~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~~~  346 (351)
                      +++++++++.+|+++|.+++++++||||+ +|+++|+||..||++.+.....
T Consensus        71 ~~~~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGiiT~~Dil~~~~~p~a  121 (126)
T d1zfja4          71 VTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEFPHA  121 (126)
T ss_dssp             CCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHCTTC
T ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEEcC-CCeEEEEEEHHHHHHHhhCccc
Confidence            89999999999999999999999999998 8999999999999999876543

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=1.4e-18  Score=142.96  Aligned_cols=117  Identities=15%  Similarity=0.316  Sum_probs=103.6

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhcc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  278 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~-----~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~  278 (351)
                      +++.+|+    ++++++++++++.+|++.|.++     +++.+||+|+ +|+++|+++.+|++...            ..
T Consensus         2 taG~iM~----~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~-~~~l~G~v~~~dl~~~~------------~~   64 (144)
T d2yvxa2           2 EAGGLMT----PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVAD------------PR   64 (144)
T ss_dssp             SSGGGCB----SCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT-TCBBCCBCBHHHHTTSC------------TT
T ss_pred             CcccccC----CCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecC-CCCEecccchhhhhhcc------------cc
Confidence            5789999    5599999999999999999776     4789999998 48999999999985432            34


Q ss_pred             CcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcC
Q 018713          279 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  343 (351)
Q Consensus       279 ~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~  343 (351)
                      .++.+    +|. ++++++++++++.+|++.|.+++++++||||+ +|+++|+||.+||++++.+
T Consensus        65 ~~v~~----im~-~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~-~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          65 TRVAE----IMN-PKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             CBSTT----TSB-SSCCCEESSCCHHHHHHHHHHSCCSEEEEECS-SCBEEEEEEHHHHHHHHHH
T ss_pred             cchHH----hcc-cCCccCCCCChHHHHHHHHHHcCCCEEEEEeE-CCEEEEEEEHHHHHHHHHH
Confidence            56777    586 89999999999999999999999999999998 8999999999999998754

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=6.4e-18  Score=138.54  Aligned_cols=125  Identities=20%  Similarity=0.274  Sum_probs=107.2

Q ss_pred             CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      +.|+++|+   ++++++++++|+.+|++.|.++++.++||+|+++        +++|+++..|++.++...         
T Consensus         3 m~v~dim~---~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~--------~~~Giit~~di~~~~~~~---------   62 (142)
T d1pvma4           3 MRVEKIMN---SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNG--------NDVGLLSERSIIKRFIPR---------   62 (142)
T ss_dssp             CBGGGTSB---TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTS--------CEEEEEEHHHHHHHTGGG---------
T ss_pred             EEHHHhCC---CCCcEECCcCcHHHHHHHHHHCCCceEeeeccCC--------cccceEEeechhhhhhhh---------
Confidence            46889997   6899999999999999999999999999998753        899999999998543211         


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                               .......
T Consensus        63 -------------------------------------------------------------------------~~~~~~~   69 (142)
T d1pvma4          63 -------------------------------------------------------------------------NKKPDEV   69 (142)
T ss_dssp             -------------------------------------------------------------------------CCCGGGS
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     0113346


Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      +++++|+    ++++++++++++.+|++.|.+++++++||+|+ +|+++|+||..||++++.+
T Consensus        70 ~v~~im~----~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4          70 PIRLVMR----KPIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             BGGGTSB----SSCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTSCH
T ss_pred             ccccccc----cccccccchhhHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHHHHhh
Confidence            7899999    66999999999999999999999999999998 4899999999999987743

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.73  E-value=2e-18  Score=146.73  Aligned_cols=158  Identities=16%  Similarity=0.166  Sum_probs=117.7

Q ss_pred             HHHHHHhccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHh
Q 018713           35 ETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET  114 (351)
Q Consensus        35 ~~~~~~~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~  114 (351)
                      ..+.++|.+.++.++|. ++++++++++++|+.+|++.|.+++++++||+|++.+       +++|+++..|++.++...
T Consensus        11 ~~i~~fl~~~~~~dvm~-~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~-------~~vGiis~~Di~~~l~~~   82 (179)
T d2ooxe1          11 KEIQAFIRSRTSYDVLP-TSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEAN-------KFAGLLTMADFVNVIKYY   82 (179)
T ss_dssp             HHHHHHHHHSBHHHHSC-SEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTT-------EEEEEECHHHHHHHHHHH
T ss_pred             HHHHHHHcCCEeeeeCC-CCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCC-------eeEEEEeechHHHHHHhc
Confidence            45678889999999986 4578999999999999999999999999999997643       899999999999877655


Q ss_pred             hHHHhhhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHh
Q 018713          115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVI  194 (351)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l  194 (351)
                      .......                             .......                          .......    
T Consensus        83 ~~~~~~~-----------------------------~~~~~~~--------------------------~~~~~~~----  103 (179)
T d2ooxe1          83 YQSSSFP-----------------------------EAIAEID--------------------------KFRLLGL----  103 (179)
T ss_dssp             HHHCSCG-----------------------------GGGGGGG--------------------------GSBHHHH----
T ss_pred             cccccch-----------------------------hhhhhhh--------------------------ccchhhh----
Confidence            3322100                             0000000                          0000000    


Q ss_pred             hhcCCCCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC----CCCEEEEEeHHHHHHHhhcCC
Q 018713          195 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG----TPDIKNYITQSAVVQGLEGCK  268 (351)
Q Consensus       195 ~~~~~~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~----~g~liGiIt~~dil~~l~~~~  268 (351)
                           .....+..+|.    .+++++.+++++.+|+..|.+++++++||+|++    +++++|+||++||++++..+.
T Consensus       104 -----~~~~~~~~~~~----~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~~  172 (179)
T d2ooxe1         104 -----REVERKIGAIP----PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNC  172 (179)
T ss_dssp             -----HHHHHHTTCSC----SSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTTC
T ss_pred             -----cccceeeeecc----cCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHhh
Confidence                 01123344566    569999999999999999999999999999863    236999999999999997653

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.73  E-value=1.6e-17  Score=133.95  Aligned_cols=120  Identities=18%  Similarity=0.260  Sum_probs=102.2

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  282 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~-~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~  282 (351)
                      +|+++|+    ++++++++++++.+|++.|.+++++++||++.+ +++++|+++..|+++.+..+..       ......
T Consensus         2 ~V~dim~----~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~-------~~~~~~   70 (131)
T d2riha1           2 RTSELLK----RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD-------LDGPAM   70 (131)
T ss_dssp             BGGGGCC----SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC-------TTSBSG
T ss_pred             CHHHhcc----CCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccc-------cccccc
Confidence            6899999    669999999999999999999999999999431 4789999999999998865432       122222


Q ss_pred             ccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713          283 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (351)
Q Consensus       283 ~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l  341 (351)
                      .     +. .+.+++.+++++.+++++|.+++++.+||+|+ +|+++|+||..||++.+
T Consensus        71 ~-----~~-~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~-~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          71 P-----IA-NSPITVLDTDPVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFER  122 (131)
T ss_dssp             G-----GC-BCCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCH
T ss_pred             c-----cc-ccceeEeeecchHHHHHHHHHCCeEEEEEEcC-CCeEEEEEEHHHHHHHH
Confidence            2     33 67789999999999999999999999999998 89999999999998754

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=2.1e-18  Score=139.58  Aligned_cols=129  Identities=15%  Similarity=0.213  Sum_probs=106.1

Q ss_pred             CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      .+|+++|. |.++++++++++|+.+|++.|.+++++++||+|+++        +++|+++..||+.+++......     
T Consensus         2 ~tv~~~mi-p~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~--------~~vGiit~~di~~~~~~~~~~~-----   67 (132)
T d1yava3           2 ATVGQFMI-EADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSY--------RLHGLIGTNMIMNSIFGLERIE-----   67 (132)
T ss_dssp             CBHHHHSE-EGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTC--------BEEEEEEHHHHHHHHBCSSSBC-----
T ss_pred             CCHHHccc-cccceEEEcCCCCHHHHHHHHHhhCCCceEEeeccc--------ccccEEEcchhHHHhhcccccc-----
Confidence            46677775 568899999999999999999999999999998753        8999999999997653321100     


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                               .......
T Consensus        68 -------------------------------------------------------------------------~~~~~~~   74 (132)
T d1yava3          68 -------------------------------------------------------------------------FEKLDQI   74 (132)
T ss_dssp             -------------------------------------------------------------------------GGGTTTS
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     0123457


Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      +++++|+    +++.++.+++++.+++..|.+++  .+||+|+ +|+++|+||++|+++++..
T Consensus        75 ~v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~-~~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          75 TVEEVML----TDIPRLHINDPIMKGFGMVINNG--FVCVEND-EQVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             BHHHHSB----CSCCEEETTSBHHHHHHHTTTCS--EEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             ccccccc----ccccccccchhHHHHHHHHHhCC--EEEEEcc-CCEEEEEEEHHHHHHHHHh
Confidence            8999999    66999999999999999998654  5999998 4899999999999999853

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.73  E-value=1.7e-17  Score=137.88  Aligned_cols=132  Identities=13%  Similarity=0.122  Sum_probs=106.8

Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CCCEEEEEeHHHHHHHhhcCCCC---ch---
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCKGR---DW---  272 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~-~g~liGiIt~~dil~~l~~~~~~---~~---  272 (351)
                      ....+|+|+|+    ++++++++++++.+|++.|.+++++++||+|++ ++.++|+++..|+++++......   ..   
T Consensus         8 ~~~~~V~diM~----~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~   83 (160)
T d2d4za3           8 KYNIQVGDIMV----RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEE   83 (160)
T ss_dssp             CSSCBTTSSSB----SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCS
T ss_pred             ccceEHHHhcC----CCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhh
Confidence            34679999999    569999999999999999999999999999852 36899999999998887532100   00   


Q ss_pred             ---h----------hhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHH
Q 018713          273 ---F----------DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  339 (351)
Q Consensus       273 ---l----------~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~  339 (351)
                         .          .......+.+    +|. +++++|.+++++.+++++|.+++++++||+|+  |+++|+||.+||++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~--g~lvGiIt~~Di~k  156 (160)
T d2d4za3          84 MLTLEEIYRWEQREKNVVVNFETC----RID-QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM--GKLVGVVALAEIQA  156 (160)
T ss_dssp             CCBHHHHHHHHHHHTTCBCCTTSS----CEE-CCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHH
T ss_pred             ccccchhhhhhhhhcccccceeee----ccc-CCCEEEcCCCCHHHHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHH
Confidence               0          0011222333    575 88899999999999999999999999999986  99999999999999


Q ss_pred             Hhc
Q 018713          340 LLL  342 (351)
Q Consensus       340 ~l~  342 (351)
                      ++.
T Consensus       157 ~I~  159 (160)
T d2d4za3         157 AIE  159 (160)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            875

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.73  E-value=2.9e-18  Score=137.86  Aligned_cols=123  Identities=18%  Similarity=0.289  Sum_probs=102.0

Q ss_pred             ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713           45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV  124 (351)
Q Consensus        45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~  124 (351)
                      +++++|....++++++++++|+.+|++.|.++++.++||++++         +++|+++..||+..+...          
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~---------~~vGiit~~Di~~~~~~~----------   63 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE---------KLVGILTERDFSRKSYLL----------   63 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETT---------EEEEEEEHHHHHHHGGGS----------
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEECC---------eEEEEEEccchhhhhhhh----------
Confidence            3445554334689999999999999999999999999999853         899999999998432111          


Q ss_pred             ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713          125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~  204 (351)
                                                                                              .......+
T Consensus        64 ------------------------------------------------------------------------~~~~~~~~   71 (127)
T d2rc3a1          64 ------------------------------------------------------------------------DKPVKDTQ   71 (127)
T ss_dssp             ------------------------------------------------------------------------SSCGGGSB
T ss_pred             ------------------------------------------------------------------------ccccccee
Confidence                                                                                    01233468


Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL  264 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l  264 (351)
                      ++++|+    +++.++.+++++.+|++.|.+++++++||+|+  |+++|+||++|+++.+
T Consensus        72 v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          72 VKEIMT----RQVAYVDLNNTNEDCMALITEMRVRHLPVLDD--GKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             GGGTSB----CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             Eeeecc----ceeEEeccCccHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            899999    66999999999999999999999999999984  5999999999999876

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.72  E-value=1.2e-17  Score=134.39  Aligned_cols=116  Identities=16%  Similarity=0.266  Sum_probs=100.4

Q ss_pred             cccCCCCCCCCcEEEcCCCCHHHHHHHHHHc-----CceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713           46 VLSFPNVPGGRVIEIMADTTIPDAVKILSEC-----NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA  120 (351)
Q Consensus        46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~-----~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~  120 (351)
                      +..+|+   ++++++++++|+.+|++.|.++     ++..+||+|+++        +++|+++..+++            
T Consensus         3 aG~iM~---~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~--------~l~G~v~~~~l~------------   59 (127)
T d2ouxa2           3 AGAIMT---TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQEN--------HLVGVISLRDLI------------   59 (127)
T ss_dssp             HHHHCB---SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTC--------BEEEEEEHHHHT------------
T ss_pred             hhHhCC---CCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCC--------eEEEEEEeeccc------------
Confidence            345676   7899999999999999999887     478999999864        899999987766            


Q ss_pred             hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713          121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF  200 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~  200 (351)
                                                                                                   ...
T Consensus        60 -----------------------------------------------------------------------------~~~   62 (127)
T d2ouxa2          60 -----------------------------------------------------------------------------VND   62 (127)
T ss_dssp             -----------------------------------------------------------------------------TSC
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         113


Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ...+|.++|+    +++.++++++++.+|++.|.+++++++||+|+ +|+++|+||..||++++.+
T Consensus        63 ~~~~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~-~g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2          63 DDTLIADILN----ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             TTSBHHHHSB----SCCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             ccEEhhhhcc----CCCccCCCCCCHHHHHHHHHHhCCEEEEEEeC-CCEEEEEEEHHHHHHHHHH
Confidence            3578999999    56999999999999999999999999999998 4899999999999998743

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=1.3e-17  Score=136.71  Aligned_cols=129  Identities=19%  Similarity=0.179  Sum_probs=103.9

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCC---------chhh
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR---------DWFD  274 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~---------~~l~  274 (351)
                      .|.++|+    .+++++++++++.+|++.|.+++++++||+|++ |+++|+||..|+++.+......         ....
T Consensus         5 ~v~~~m~----~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~   79 (145)
T d1o50a3           5 DVCKLIS----LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK   79 (145)
T ss_dssp             HHTTSSC----CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC-------CCC
T ss_pred             EhHHhCC----CCCEEECCcCcHHHHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchhHHHHhhhh
Confidence            4566777    558999999999999999999999999999984 8999999999998876432100         0011


Q ss_pred             hhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          275 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       275 ~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      .+...++++    .|  .+++++.+++++.+|+++|.+++++++||||+ +|+++|+||..||++++.+.
T Consensus        80 ~~~~~~~~~----~~--~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~-~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          80 RLIAKNASE----IM--LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             CCSSCBHHH----HC--BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHS
T ss_pred             hccccCHHH----Hc--CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHHHhc
Confidence            122333444    24  46678999999999999999999999999998 89999999999999998654

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=4.4e-18  Score=141.78  Aligned_cols=135  Identities=13%  Similarity=0.169  Sum_probs=107.7

Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCc-----hhhh
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-----WFDI  275 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~-----~l~~  275 (351)
                      ...++.|+|.+.  .++++++.++++.+|++.|.+++++++||+|+++++++|++|..|++..+.......     ....
T Consensus        11 ~~~t~~Dlm~~~--~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~   88 (159)
T d2v8qe2          11 KSHRCYDLIPTS--SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEE   88 (159)
T ss_dssp             HHSBGGGGSCSE--EEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGG
T ss_pred             cCCEEEeECCCC--CceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhh
Confidence            346889999765  678999999999999999999999999999865578999999999988875321100     0000


Q ss_pred             ----hccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713          276 ----IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (351)
Q Consensus       276 ----l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~  342 (351)
                          .......+    +|. .++++|++++++.+|+++|.+++++++||+|+++|+++|+||.+||++++.
T Consensus        89 ~~~~~~~~~~~~----~~~-~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2          89 HKIETWREVYLQ----DSF-KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             CBHHHHHHHHSS----SSC-CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             hhcccccceeee----eec-cceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHH
Confidence                00111122    465 788999999999999999999999999999854789999999999999874

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.72  E-value=3e-17  Score=136.32  Aligned_cols=150  Identities=13%  Similarity=0.103  Sum_probs=112.8

Q ss_pred             cCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhh
Q 018713           43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF  122 (351)
Q Consensus        43 ~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~  122 (351)
                      +++|+++|.   ++++++++++|+.+|+++|.+++++++||+|++.      ...++|+++..|++..+...........
T Consensus        10 ~~~V~diM~---~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~------~~~lvg~is~~dl~~~l~~~~~~~~~~~   80 (160)
T d2d4za3          10 NIQVGDIMV---RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD------TNTLLGSIDRTEVEGLLQRRISAYRRQP   80 (160)
T ss_dssp             SCBTTSSSB---SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTT------TCBEEEEEEHHHHHHHHHHHHHTTSSSC
T ss_pred             ceEHHHhcC---CCCeEECCCCcHHHHHHHHHhcCCCccccccccc------cccccccchHHHHHHHHhhccccccccc
Confidence            679999997   7999999999999999999999999999998643      2379999999999977665432211000


Q ss_pred             ccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCc
Q 018713          123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS  202 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~  202 (351)
                                                                           .....     ...+.............
T Consensus        81 -----------------------------------------------------~~~~~-----~~~~~~~~~~~~~~~~~  102 (160)
T d2d4za3          81 -----------------------------------------------------FEEML-----TLEEIYRWEQREKNVVV  102 (160)
T ss_dssp             -----------------------------------------------------CCSCC-----BHHHHHHHHHHHTTCBC
T ss_pred             -----------------------------------------------------hhhcc-----ccchhhhhhhhhccccc
Confidence                                                                 00000     01111111111133455


Q ss_pred             CchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      ..+.++|.    .+++++.+++++.+++++|.+++++++||+++  |+++|+||++||++++.
T Consensus       103 ~~~~~~~~----~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~--g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3         103 NFETCRID----QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM--GKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             CTTSSCEE----CCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHH
T ss_pred             ceeeeccc----CCCEEEcCCCCHHHHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHHHhC
Confidence            66788998    56999999999999999999999999999985  69999999999999863

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.72  E-value=2.3e-17  Score=131.18  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=101.9

Q ss_pred             cccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccc
Q 018713           46 VLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVG  125 (351)
Q Consensus        46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~  125 (351)
                      |+++|.   ++++++++++|+.+|++.|.++++..+||.+++         +++|+++..||+.++...           
T Consensus         2 V~diM~---~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~---------~~~Gvit~~Di~~~l~~~-----------   58 (120)
T d1pbja3           2 VEDVMV---TDVDTIDITASLEDVLRNYVENAKGSSVVVKEG---------VRVGIVTTWDVLEAIAEG-----------   58 (120)
T ss_dssp             HHHHCB---CSCCEEETTCBHHHHHHHHHHHCCCEEEEEETT---------EEEEEEEHHHHHHHHHHT-----------
T ss_pred             hHHhCC---CCCeEECCcCcHHHHHHHHHHcCceEEEEEeCC---------cEEEEEEeeecccccccc-----------
Confidence            566776   689999999999999999999999999999753         899999999998654322           


Q ss_pred             cccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCch
Q 018713          126 TATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTV  205 (351)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V  205 (351)
                                                                                              ......++
T Consensus        59 ------------------------------------------------------------------------~~~~~~~v   66 (120)
T d1pbja3          59 ------------------------------------------------------------------------DDLAEVKV   66 (120)
T ss_dssp             ------------------------------------------------------------------------CCTTTSBH
T ss_pred             ------------------------------------------------------------------------ccccceeE
Confidence                                                                                    22445789


Q ss_pred             HhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713          206 RSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL  264 (351)
Q Consensus       206 ~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l  264 (351)
                      .++|+    .++.++++++++.+|++.|.+++++++||+++  |+++|++|.+|++++.
T Consensus        67 ~~~m~----~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~--~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          67 WEVME----RDLVTISPRATIKEAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAK  119 (120)
T ss_dssp             HHHCB----CGGGEECTTSCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             eeecc----cccccccchhHHHHHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHhcC
Confidence            99999    55999999999999999999999999999875  5999999999999874

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2.2e-17  Score=134.80  Aligned_cols=120  Identities=18%  Similarity=0.256  Sum_probs=94.7

Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCccccc-c-cCccCCC
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL-G-LPFMSSD  292 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L-~-~~~m~~~  292 (351)
                      +++.++.+++++.+|++.|.+++++++||+|++ |+++|+||..|+++++........     ...+.+. . -..+. .
T Consensus        17 ~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~   89 (140)
T d2nyca1          17 DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDL-----SLSVGEALMRRSDDF-E   89 (140)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----C-----CSBHHHHHHHCC-----
T ss_pred             CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhcccccc-----ccchhhhhhhhhhcc-c
Confidence            679999999999999999999999999999984 899999999999999865542111     1111110 0 00232 6


Q ss_pred             CceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhc
Q 018713          293 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  342 (351)
Q Consensus       293 ~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~  342 (351)
                      ++++|++++++.+++++|.+++.+++||||+ +|+++|+||.+||++++.
T Consensus        90 ~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~-~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          90 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             --CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             ccEEECCCCcHHHHHHHHHhcCeeEEEEEeC-CCeEEEEEEHHHHHHHHh
Confidence            7789999999999999999999999999998 899999999999999864

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.71  E-value=1.3e-17  Score=141.60  Aligned_cols=140  Identities=14%  Similarity=0.156  Sum_probs=107.5

Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCC---CCch-hhhh
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK---GRDW-FDII  276 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~---~~~~-l~~l  276 (351)
                      ...++.|+|.+.  .+++++++++++.+|++.|.+++++++||+|+++++++|++|..|+++.+....   .... ...+
T Consensus        18 ~~~~~~dvm~~s--~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~   95 (179)
T d2ooxe1          18 RSRTSYDVLPTS--FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEI   95 (179)
T ss_dssp             HHSBHHHHSCSE--EEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGG
T ss_pred             cCCEeeeeCCCC--CcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhh
Confidence            457899999865  679999999999999999999999999999965578999999999998764210   0000 0000


Q ss_pred             ccCccccc-----ccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCC-----CeEEEEEeHHHHHHHhcCc
Q 018713          277 ASQPISDL-----GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-----KKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       277 ~~~~v~~L-----~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~-----g~liGiIt~~DIl~~l~~~  344 (351)
                      .......+     ...+|. +++++|.+++++.+|+.+|.+++++++||+|+ +     ++++|+||.+||++++..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~-~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~-~g~~~~~~vvgiiT~~dIlk~l~~~  171 (179)
T d2ooxe1          96 DKFRLLGLREVERKIGAIP-PETIYVHPMHSLMDACLAMSKSRARRIPLIDV-DGETGSEMIVSVLTQYRILKFISMN  171 (179)
T ss_dssp             GGSBHHHHHHHHHHTTCSC-SSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEE-CTTTCCEEEEEEEEHHHHHHHHHTT
T ss_pred             hccchhhhcccceeeeecc-cCceEECCCCcHHHHHHHhhhcCceEEEEEec-CCCcCCCcEEEEEeHHHHHHHHHHh
Confidence            00000000     001465 88999999999999999999999999999986 4     3799999999999998543

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.71  E-value=4.3e-17  Score=135.09  Aligned_cols=133  Identities=10%  Similarity=0.166  Sum_probs=106.8

Q ss_pred             CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      +|+++++-...+++++|++++|+.+|++.|.+++++++||+|+++        +++|+++..||+.++.....       
T Consensus         1 ~pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~--------~~vG~it~~Dl~~~~~~~~~-------   65 (153)
T d2ooxe2           1 VPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEG--------TLLNVYESVDVMHLIQDGDY-------   65 (153)
T ss_dssp             CBGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGG--------BEEEEEEHHHHHHHHGGGCG-------
T ss_pred             CCHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccc--------eEEEEEEeeeeeehhccccc-------
Confidence            578888764467899999999999999999999999999998753        89999999999865432210       


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                                 .....
T Consensus        66 ---------------------------------------------------------------------------~~~~~   70 (153)
T d2ooxe2          66 ---------------------------------------------------------------------------SNLDL   70 (153)
T ss_dssp             ---------------------------------------------------------------------------GGGGS
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       01123


Q ss_pred             chHhhhhccC--CCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          204 TVRSIIKSYR--WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       204 ~V~dim~~~~--~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                      ++.++|+...  ..++.++.+++++.++++.|.+++++++||+|+ +|+++|+||++|+++++...
T Consensus        71 ~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2          71 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             BHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECT-TCBEEEEEEHHHHHHHHHSC
T ss_pred             chhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcC-CCEEEEEEEHHHHHHHHHcC
Confidence            4555554321  145778999999999999999999999999998 48999999999999998643

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.71  E-value=5.5e-17  Score=134.43  Aligned_cols=132  Identities=16%  Similarity=0.272  Sum_probs=104.8

Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  283 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~  283 (351)
                      |+++++-. .|++++++.+++++.+|++.|.+++++++||+|+ +|+++|++|..|+++.+..... ..    ...++.+
T Consensus         2 pl~~~~ig-~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~-~~~~vG~it~~Dl~~~~~~~~~-~~----~~~~v~~   74 (153)
T d2ooxe2           2 PLNQMTIG-TWSNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDGDY-SN----LDLSVGE   74 (153)
T ss_dssp             BGGGTCCS-BCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG-GGBEEEEEEHHHHHHHHGGGCG-GG----GGSBHHH
T ss_pred             CHHHcCCC-CCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc-cceEEEEEEeeeeeehhccccc-cc----cccchhh
Confidence            45555432 1467999999999999999999999999999998 4899999999999988865431 11    1223333


Q ss_pred             c--ccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          284 L--GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       284 L--~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      .  .-+.+. .+++++.+++++.++++.|.+++++++||||+ +|+++|+||.+||++++...
T Consensus        75 ~~~~~~~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2          75 ALLKRPANF-DGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             HHHTSCCCS-SCCCEECTTCBHHHHHHHHHHSCCSEEEEECT-TCBEEEEEEHHHHHHHHHSC
T ss_pred             heeeeeccc-CCCeEECCCCcHHHHHHhhhhceeeEEEEEcC-CCEEEEEEEHHHHHHHHHcC
Confidence            1  000233 67789999999999999999999999999998 89999999999999987543

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=5.5e-17  Score=133.06  Aligned_cols=135  Identities=14%  Similarity=0.197  Sum_probs=106.1

Q ss_pred             cCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCchh-hhhccCc
Q 018713          202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF-DIIASQP  280 (351)
Q Consensus       202 ~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~~~~~l-~~l~~~~  280 (351)
                      ..+++++.-.. +++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||..|+++.+........- .......
T Consensus         8 ~~~l~~l~i~~-~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~-~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~   85 (145)
T d2v8qe1           8 SKSLEELQIGT-YANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQ   85 (145)
T ss_dssp             GSBHHHHTCSB-CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGG
T ss_pred             hCCHHHHcCCC-CCCceEEcCcCcHHHHHHHHHHcCCCccccccc-CCceEEEEEcchhhhhhhcccccchhhhhhhccc
Confidence            35667765421 246889999999999999999999999999998 48999999999998888654321110 0000111


Q ss_pred             ccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHhcCc
Q 018713          281 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  344 (351)
Q Consensus       281 v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l~~~  344 (351)
                      ...    .|. .++++|.+++++.+++++|.+++++++||+|+ +|+++|+||.+||++++...
T Consensus        86 ~~~----~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~l~GiVt~~dii~~lv~~  143 (145)
T d2v8qe1          86 HRS----HYF-EGVLKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALVLT  143 (145)
T ss_dssp             GCC----SCC-CSCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHSS
T ss_pred             hhh----hcc-CCCeEECCCCcHHHHHHHHHHcCceEEEEEcc-CCEEEEEEEHHHHHHHHHhc
Confidence            222    354 78889999999999999999999999999998 89999999999999998654

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1e-16  Score=130.74  Aligned_cols=136  Identities=11%  Similarity=0.154  Sum_probs=102.2

Q ss_pred             hccCccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhh
Q 018713           41 FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA  120 (351)
Q Consensus        41 ~~~~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~  120 (351)
                      |-+.|+.++.....++++++.+++|+.+|++.|.+++++++||+|+++        +++|+++..|++.++........ 
T Consensus         3 ~~~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~--------~~vG~it~~Di~~~~~~~~~~~~-   73 (140)
T d2nyca1           3 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG--------YLINVYEAYDVLGLIKGGIYNDL-   73 (140)
T ss_dssp             GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC--------BEEEEEEHHHHHHHHHTC----C-
T ss_pred             cccCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCC--------eEcceehhhHHHHHHhhcccccc-
Confidence            346788887554568999999999999999999999999999999753        89999999999977644321110 


Q ss_pred             hhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCC
Q 018713          121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF  200 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~  200 (351)
                                                                                        .......+      
T Consensus        74 ------------------------------------------------------------------~~~~~~~~------   81 (140)
T d2nyca1          74 ------------------------------------------------------------------SLSVGEAL------   81 (140)
T ss_dssp             ------------------------------------------------------------------CSBHHHHH------
T ss_pred             ------------------------------------------------------------------ccchhhhh------
Confidence                                                                              00000000      


Q ss_pred             CcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       201 ~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                         .....+.    .++.++++++++.++++.|.+++++++||+|+ +|+++|+||.+|+++++.
T Consensus        82 ---~~~~~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~-~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          82 ---MRRSDDF----EGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             ---HHCC----------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             ---hhhhhcc----cccEEECCCCcHHHHHHHHHhcCeeEEEEEeC-CCeEEEEEEHHHHHHHHh
Confidence               0111222    45788999999999999999999999999998 589999999999999874

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=6.7e-17  Score=132.40  Aligned_cols=137  Identities=12%  Similarity=0.111  Sum_probs=105.6

Q ss_pred             cccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccc
Q 018713           46 VLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVG  125 (351)
Q Consensus        46 v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~  125 (351)
                      +.++|+   .+++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..||+.++.........     
T Consensus         6 v~~~m~---~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~--------~~vGiis~~Dl~~~~~~~~~~~~~-----   69 (145)
T d1o50a3           6 VCKLIS---LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN--------KLVGMIPVMHLLKVSGFHFFGFIP-----   69 (145)
T ss_dssp             HTTSSC---CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT--------EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             hHHhCC---CCCEEECCcCcHHHHHHHHHHcCCceEEEeccCc--------ceeeeeccchhhhhhhcccccccc-----
Confidence            344554   7889999999999999999999999999998653        899999999999766544211100     


Q ss_pred             cccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCch
Q 018713          126 TATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTV  205 (351)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V  205 (351)
                                                                                   ..+..  ..........++
T Consensus        70 -------------------------------------------------------------~~~~~--~~~~~~~~~~~~   86 (145)
T d1o50a3          70 -------------------------------------------------------------KEELI--RSSMKRLIAKNA   86 (145)
T ss_dssp             ----------------------------------------------------------------------CCCCCSSCBH
T ss_pred             -------------------------------------------------------------hhHHH--HhhhhhccccCH
Confidence                                                                         00000  000123455678


Q ss_pred             HhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 018713          206 RSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  267 (351)
Q Consensus       206 ~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~  267 (351)
                      +++|.     +++++.+++++.+|++.|.+++++++||+|+ +|+++|+||++|+++++..+
T Consensus        87 ~~~~~-----~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~-~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          87 SEIML-----DPVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             HHHCB-----CCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHS
T ss_pred             HHHcC-----CCEEEcCCCCHHHHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHHHhc
Confidence            88876     3578999999999999999999999999988 58999999999999999764

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=3.6e-17  Score=134.32  Aligned_cols=117  Identities=18%  Similarity=0.272  Sum_probs=101.8

Q ss_pred             ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcC-----ceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHh
Q 018713           45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECN-----ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAA  119 (351)
Q Consensus        45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~-----i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~  119 (351)
                      ++.++|+   ++++++++++|+.+|++.|.+++     +..+||+|+++        +++|+++..||+.          
T Consensus         2 taG~iM~---~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~--------~l~G~v~~~dl~~----------   60 (144)
T d2yvxa2           2 EAGGLMT---PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKG--------RLKGVLSLRDLIV----------   60 (144)
T ss_dssp             SSGGGCB---SCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTC--------BBCCBCBHHHHTT----------
T ss_pred             CcccccC---CCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCC--------CEecccchhhhhh----------
Confidence            3567787   68999999999999999998874     78999999864        8999999988761          


Q ss_pred             hhhccccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCC
Q 018713          120 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEP  199 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~  199 (351)
                                                                                                     .
T Consensus        61 -------------------------------------------------------------------------------~   61 (144)
T d2yvxa2          61 -------------------------------------------------------------------------------A   61 (144)
T ss_dssp             -------------------------------------------------------------------------------S
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           1


Q ss_pred             CCcCchHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       200 ~~~~~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      ....++.++|+    +++.++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+||++.+.+
T Consensus        62 ~~~~~v~~im~----~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~-~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          62 DPRTRVAEIMN----PKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             CTTCBSTTTSB----SSCCCEESSCCHHHHHHHHHHSCCSEEEEECS-SCBEEEEEEHHHHHHHHHH
T ss_pred             ccccchHHhcc----cCCccCCCCChHHHHHHHHHHcCCCEEEEEeE-CCEEEEEEEHHHHHHHHHH
Confidence            23467889999    56999999999999999999999999999998 4899999999999998854

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=7.9e-17  Score=128.23  Aligned_cols=117  Identities=14%  Similarity=0.207  Sum_probs=102.7

Q ss_pred             ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713           45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV  124 (351)
Q Consensus        45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~  124 (351)
                      .|.++|.   +++.++++++|+.+|++.|.+++..++||+|+++        +++|+++..|++.               
T Consensus         2 ~v~~~m~---~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~--------~~~Gii~~~dl~~---------------   55 (121)
T d1vr9a3           2 KVKKWVT---QDFPMVEESATVRECLHRMRQYQTNECIVKDREG--------HFRGVVNKEDLLD---------------   55 (121)
T ss_dssp             BGGGGCB---SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTS--------BEEEEEEGGGGTT---------------
T ss_pred             Cchhhhc---CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCc--------eeEEEeehhhhhh---------------
Confidence            4677786   7889999999999999999999999999998653        8999999877661               


Q ss_pred             ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713          125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~  204 (351)
                                                                                                .....+
T Consensus        56 --------------------------------------------------------------------------~~~~~~   61 (121)
T d1vr9a3          56 --------------------------------------------------------------------------LDLDSS   61 (121)
T ss_dssp             --------------------------------------------------------------------------SCTTSB
T ss_pred             --------------------------------------------------------------------------hhcccc
Confidence                                                                                      122457


Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      +.++|.    .+++++++++++.++++.|.+++...+||+|+ +|+++|+||..|+++++.+
T Consensus        62 v~~~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde-~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          62 VFNKVS----LPDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             SGGGCB----CTTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             cccccc----CccEEECCCCCHHHHHHHHHhcCceeeeeECC-CCeEEEEEEHHHHHHHHHH
Confidence            889998    56899999999999999999999999999998 4899999999999998865

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.69  E-value=4.1e-17  Score=132.10  Aligned_cols=132  Identities=8%  Similarity=0.080  Sum_probs=105.6

Q ss_pred             CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      +.|+++|.   ++++++++++|+.+|++.|.+++++++||+|+          +++|+++..+++.++.......     
T Consensus         1 m~V~~lM~---~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~----------~lvg~~~~~~~~~~~~~~~~~~-----   62 (135)
T d3ddja2           1 MNIETLMI---KNPPILSKEDRLGSAFKKINEGGIGRIIVANE----------KIEGLLTTRDLLSTVESYCKDS-----   62 (135)
T ss_dssp             SSGGGTCE---ESCCEECTTSBHHHHHHHTTGGGCCEEEEESS----------SEEEEEEHHHHHGGGTTCC--------
T ss_pred             CEeeEEee---CCCeEECCCCcHHHHHHHHHHhCCeEEEEEec----------ceeceeeccchhhhhccccccc-----
Confidence            36788886   57788999999999999999999999999976          6999999999985432221100     


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                    ......      ......
T Consensus        63 --------------------------------------------------------------~~~~~~------~~~~~~   74 (135)
T d3ddja2          63 --------------------------------------------------------------CSQGDL------YHISTT   74 (135)
T ss_dssp             --------------------------------------------------------------CCHHHH------HHHHTS
T ss_pred             --------------------------------------------------------------hhhhhc------cccccC
Confidence                                                                          000000      112347


Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      +++++|+    .++.++++++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++++.+
T Consensus        75 ~v~~im~----~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          75 PIIDYMT----PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI-NDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             BGGGTSE----ESCCCEETTSCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHGGGGGG
T ss_pred             CHHHHhC----CccceEEeccccchhhhhhhhcceeEEEEEeC-CCEEEEEEEHHHHHHHHHH
Confidence            8999999    55999999999999999999999999999998 4899999999999998854

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=8.6e-18  Score=134.17  Aligned_cols=117  Identities=15%  Similarity=0.241  Sum_probs=84.4

Q ss_pred             ccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcc
Q 018713           45 PVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSV  124 (351)
Q Consensus        45 ~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~  124 (351)
                      .++++|.   ++++++++++|+.+|++.|.++++.++||+|+++        +++|+|+..|++..              
T Consensus         2 ~v~diM~---~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~--------~~~G~it~~dl~~~--------------   56 (122)
T d2yzqa2           2 RVKTIMT---QNPVTITLPATRNYALELFKKYKVRSFPVVNKEG--------KLVGIISVKRILVN--------------   56 (122)
T ss_dssp             BHHHHSE---ESCCCEESSCC------------CCEEEEECTTC--------CEEEEEESSCC-----------------
T ss_pred             CcccccC---CCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccc--------cchhhhhcchhhhh--------------
Confidence            4667775   5788999999999999999999999999998764        89999998776621              


Q ss_pred             ccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCc
Q 018713          125 GTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTT  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~  204 (351)
                                                                                                 ....+
T Consensus        57 ---------------------------------------------------------------------------~~~~~   61 (122)
T d2yzqa2          57 ---------------------------------------------------------------------------PDEEQ   61 (122)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------------------------------------------hcccc
Confidence                                                                                       12245


Q ss_pred             hHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       205 V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      +.++|.    .++.++++++++.++++.|.+++++++||+|+ +|+++|+||.+|+++.+..
T Consensus        62 ~~~~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          62 LAMLVK----RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             --CCCB----SCCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTT
T ss_pred             hhhccc----cceeecchhhHHHHHHHHHHHcCcEEEEEEeC-CCEEEEEEEHHHHHHHHHh
Confidence            778888    55899999999999999999999999999998 4899999999999987754

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.9e-16  Score=130.68  Aligned_cols=134  Identities=10%  Similarity=0.195  Sum_probs=103.2

Q ss_pred             CchHhhhhccCCCCcEE--ecCCCCHHHHHHHHHhCCCCEEEEEcC-CCCCEEEEEeHHHHHHHhhcCCCCc----h---
Q 018713          203 TTVRSIIKSYRWAPFLP--VATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEGCKGRD----W---  272 (351)
Q Consensus       203 ~~V~dim~~~~~~~~~~--v~~~~sl~ea~~~m~~~~~~~vpVvd~-~~g~liGiIt~~dil~~l~~~~~~~----~---  272 (351)
                      ..+.|+|.+..+.++.+  +.+++++.++.++|.+++++++||+++ ++++++|+||.+|++.++.......    .   
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~   82 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSI   82 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCE
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchh
Confidence            45788998654344443  457789999999999999999999943 3578999999999998875321000    0   


Q ss_pred             -----------hhhhccCcccccccCccCCCCceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHHh
Q 018713          273 -----------FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  341 (351)
Q Consensus       273 -----------l~~l~~~~v~~L~~~~m~~~~v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~l  341 (351)
                                 .......++.+    +|. +++++|.+++++.+++++|.+++.+++||+++  |+++|+||+.||++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~----im~-~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~--g~lvGiIt~~Dil~~l  155 (169)
T d2j9la1          83 IYFTEHSPPLPPYTPPTLKLRN----ILD-LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHI  155 (169)
T ss_dssp             EECSSSCCCCCTTCCCCEECGG----GEE-SSCCEEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             hhhcccchhhhhccccccchhh----hcc-CCCEEECCCCcHHHHHHHHHhcCceEEEEEEC--CEEEEEEEHHHHHHHH
Confidence                       00011233455    686 78899999999999999999999999998876  8999999999999987


Q ss_pred             cC
Q 018713          342 LK  343 (351)
Q Consensus       342 ~~  343 (351)
                      .+
T Consensus       156 ~~  157 (169)
T d2j9la1         156 AQ  157 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.66  E-value=2.8e-16  Score=126.46  Aligned_cols=123  Identities=12%  Similarity=0.121  Sum_probs=99.4

Q ss_pred             CccccCCCCCCCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhc
Q 018713           44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  123 (351)
Q Consensus        44 ~~v~~~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~  123 (351)
                      ++|+++|.   ++++++++++|+.+|++.|.++++.++||++.+.      .++++|+++..|++..+...         
T Consensus         1 ~~V~dim~---~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~------~~~~iGi~~~~dl~~~~~~~---------   62 (131)
T d2riha1           1 IRTSELLK---RPPVSLPETATIREVATELAKNRVGLAVLTARDN------PKRPVAVVSERDILRAVAQR---------   62 (131)
T ss_dssp             CBGGGGCC---SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE------EEEEEEEEEHHHHHHHHHTT---------
T ss_pred             CCHHHhcc---CCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcC------CCEEEEEEeeeccccccccc---------
Confidence            46889997   7889999999999999999999999999996542      34899999999988543221         


Q ss_pred             cccccccccccccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcC
Q 018713          124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  203 (351)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~  203 (351)
                                                                                                  ....
T Consensus        63 ----------------------------------------------------------------------------~~~~   66 (131)
T d2riha1          63 ----------------------------------------------------------------------------LDLD   66 (131)
T ss_dssp             ----------------------------------------------------------------------------CCTT
T ss_pred             ----------------------------------------------------------------------------cccc
Confidence                                                                                        0111


Q ss_pred             chHhhhhccCCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 018713          204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  265 (351)
Q Consensus       204 ~V~dim~~~~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~  265 (351)
                      .....+.    .++.++.+++++.++++.|.+++++++||+|+ +|+++|+||+.||++++.
T Consensus        67 ~~~~~~~----~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~-~g~l~Giit~~Dll~~~~  123 (131)
T d2riha1          67 GPAMPIA----NSPITVLDTDPVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFERA  123 (131)
T ss_dssp             SBSGGGC----BCCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCHH
T ss_pred             ccccccc----ccceeEeeecchHHHHHHHHHCCeEEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence            1223344    34778999999999999999999999999998 489999999999988763

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.66  E-value=3.1e-16  Score=125.62  Aligned_cols=114  Identities=11%  Similarity=0.242  Sum_probs=92.2

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      +++++|++++|+.+|+++|.+++++++||+|+..      .++++|+|+..||....                       
T Consensus         5 ~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~------~~~lvGivt~~Di~~~~-----------------------   55 (126)
T d1zfja4           5 IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA------NRKLVGIITNRDMRFIS-----------------------   55 (126)
T ss_dssp             SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT------TCBEEEEEEHHHHHHCS-----------------------
T ss_pred             eCceEECCCCCHHHHHHHHHHhCCCcEEEEeecc------CCeEEEEeEHHHHHHhh-----------------------
Confidence            4567999999999999999999999999998632      13799999999987210                       


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                      .........+|.    
T Consensus        56 ----------------------------------------------------------------~~~~~~~~~~~~----   67 (126)
T d1zfja4          56 ----------------------------------------------------------------DYNAPISEHMTS----   67 (126)
T ss_dssp             ----------------------------------------------------------------CSSSBTTTSCCC----
T ss_pred             ----------------------------------------------------------------ccCCceeeeeec----
Confidence                                                                            011111223344    


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                      .+++++++++++.+|+++|.+++++++||+|+ +|+++|+||++|+++++..
T Consensus        68 ~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          68 EHLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             SCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred             cceeecCCCCCHHHHHHHHHhcCCcEEEEEcC-CCeEEEEEEHHHHHHHhhC
Confidence            56888999999999999999999999999998 4899999999999998753

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.64  E-value=1.3e-17  Score=132.81  Aligned_cols=112  Identities=13%  Similarity=0.218  Sum_probs=58.1

Q ss_pred             CcEEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCchhhhhccCcccccccCccCCCC
Q 018713          216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE  293 (351)
Q Consensus       216 ~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~--~g~liGiIt~~dil~~l~~~~~~~~l~~l~~~~v~~L~~~~m~~~~  293 (351)
                      +++++++++++.+|+++|.+++++++||+|++  +++++|+||.+|+.......         ...++.+..  .+. ++
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~---------~~~~~~~~~--~~~-~~   72 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE---------HDRFLEEIM--TKR-ED   72 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------CTTCCC-------------------------------CC--SBT-TT
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccc---------cCceeEEEE--eec-cC
Confidence            36789999999999999999999999999852  46899999999985443221         123344420  122 57


Q ss_pred             ceEEcCCCcHHHHHHHHHhcCCCeeEEEeCCCCeEEEEEeHHHHHHH
Q 018713          294 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  340 (351)
Q Consensus       294 v~~V~~~~~l~~al~~m~~~~~~~lpVvd~~~g~liGiIt~~DIl~~  340 (351)
                      ++++++++++.+|+++|.+++++++||+|+ +|+++|+||.+||++.
T Consensus        73 ~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~-~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          73 LVVAPAGITLKEANEILQRSKKGKLPIVNE-NDELVAIIARTDLKKN  118 (120)
T ss_dssp             SCCEETTCCHHHHHHHTCSCC---CEEEET-TTEEEEEECHHHHHHH
T ss_pred             ceEECCCCCHHHHHHHHHHcCccEEEEEcC-CCEEEEEEEHHHhhhc
Confidence            889999999999999999999999999998 8999999999999975

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=4.4e-16  Score=127.54  Aligned_cols=122  Identities=13%  Similarity=0.154  Sum_probs=95.1

Q ss_pred             CCCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccc
Q 018713           54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG  133 (351)
Q Consensus        54 ~~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (351)
                      .+++++|.+++|+.+|++.|.+++++++||+|+++        +++|+++..||+.++....                  
T Consensus        19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~--------~~~Gvit~~di~~~l~~~~------------------   72 (145)
T d2v8qe1          19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG--------RVVDIYSKFDVINLAAEKT------------------   72 (145)
T ss_dssp             CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTS--------BEEEEEEGGGTGGGGGSSC------------------
T ss_pred             CCCceEEcCcCcHHHHHHHHHHcCCCcccccccCC--------ceEEEEEcchhhhhhhccc------------------
Confidence            46789999999999999999999999999999754        7999999999874321110                  


Q ss_pred             cccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhcc-
Q 018713          134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSY-  212 (351)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~-  212 (351)
                                                                                      ......++.+.+... 
T Consensus        73 ----------------------------------------------------------------~~~~~~~v~~~~~~~~   88 (145)
T d2v8qe1          73 ----------------------------------------------------------------YNNLDVSVTKALQHRS   88 (145)
T ss_dssp             ----------------------------------------------------------------CCCCSSBHHHHGGGCC
T ss_pred             ----------------------------------------------------------------ccchhhhhhhccchhh
Confidence                                                                            001112222222211 


Q ss_pred             -CCCCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhc
Q 018713          213 -RWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG  266 (351)
Q Consensus       213 -~~~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~  266 (351)
                       ...+++++.+++++.++++.|.+++++++||+|+ +|+++|+||++||++++..
T Consensus        89 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          89 HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHS
T ss_pred             hccCCCeEECCCCcHHHHHHHHHHcCceEEEEEcc-CCEEEEEEEHHHHHHHHHh
Confidence             0156889999999999999999999999999988 4899999999999999864

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.62  E-value=2.6e-17  Score=130.98  Aligned_cols=116  Identities=10%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             CCcEEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhcccccccccccc
Q 018713           55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT  134 (351)
Q Consensus        55 ~~~i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                      ++++++++++|+.+|+++|.++++.++||+|++..     .++++|+|+..|+......                     
T Consensus         4 ~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~-----~~~lvGivT~~Di~~~~~~---------------------   57 (120)
T d1jr1a4           4 TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRM-----GSRLVGIISSRDIDFLKEE---------------------   57 (120)
T ss_dssp             CTTCC----CCCC--CCBC---------------C-----TTCCC-----------------------------------
T ss_pred             cCCEEECCcCCHHHHHHHHHHhCCCeEEEeecccc-----CCeEeeeeeeeeeeehhcc---------------------
Confidence            45679999999999999999999999999986321     2389999999887521100                     


Q ss_pred             ccccccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCC
Q 018713          135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW  214 (351)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~  214 (351)
                                                                                       ....++..+|...  
T Consensus        58 -----------------------------------------------------------------~~~~~~~~~~~~~--   70 (120)
T d1jr1a4          58 -----------------------------------------------------------------EHDRFLEEIMTKR--   70 (120)
T ss_dssp             -------------------------------------------------------------------------CCSBT--
T ss_pred             -----------------------------------------------------------------ccCceeEEEEeec--
Confidence                                                                             1123344455433  


Q ss_pred             CCcEEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 018713          215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL  264 (351)
Q Consensus       215 ~~~~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l  264 (351)
                      .+++++.+++++.+|+++|.+++++++||+|+ +|+++|+||++||++..
T Consensus        71 ~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~-~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          71 EDLVVAPAGITLKEANEILQRSKKGKLPIVNE-NDELVAIIARTDLKKNR  119 (120)
T ss_dssp             TTSCCEETTCCHHHHHHHTCSCC---CEEEET-TTEEEEEECHHHHHHHH
T ss_pred             cCceEECCCCCHHHHHHHHHHcCccEEEEEcC-CCEEEEEEEHHHhhhcc
Confidence            56889999999999999999999999999998 48999999999998763

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.6e-15  Score=122.92  Aligned_cols=140  Identities=17%  Similarity=0.221  Sum_probs=99.8

Q ss_pred             EEEcCCCCHHHHHHHHHHcCceecceecCCCCCCCccccceeeEeeHHHHHHHHHHhhHHHhhhhccccccccccccccc
Q 018713           58 IEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTV  137 (351)
Q Consensus        58 i~v~~~~sl~~al~~m~~~~i~~~pVvd~~~~~~~~~~~~~vGiv~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (351)
                      +.+.+++|+.+|+++|.+++++++||++++.      .++++|+++..||+.++...........   ....        
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~------~~~lvG~is~~dl~~~l~~~~~~~~~~~---~~~~--------   82 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRE------SQRLVGFVLRRDLIISIENARKKQDGVV---STSI--------   82 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTT------TCBEEEEEEHHHHHHHHHHHHTSCSCCC---TTCE--------
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCC------CCeEEEEEEhHHHHHHHhcccccccccc---cchh--------
Confidence            4567889999999999999999999996443      2379999999999977654321110000   0000        


Q ss_pred             cccchhhccCCCchhhhhhHHhhhhhhhhcccccccCCCCCCchhhhhhhhHHHHHhhhcCCCCcCchHhhhhccCCCCc
Q 018713          138 GALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPF  217 (351)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~V~dim~~~~~~~~  217 (351)
                           ..++....                                           ..........+++++|.    +++
T Consensus        83 -----~~~~~~~~-------------------------------------------~~~~~~~~~~~v~~im~----~~~  110 (169)
T d2j9la1          83 -----IYFTEHSP-------------------------------------------PLPPYTPPTLKLRNILD----LSP  110 (169)
T ss_dssp             -----EECSSSCC-------------------------------------------CCCTTCCCCEECGGGEE----SSC
T ss_pred             -----hhhcccch-------------------------------------------hhhhccccccchhhhcc----CCC
Confidence                 00000000                                           00002234567899999    559


Q ss_pred             EEecCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCC
Q 018713          218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK  268 (351)
Q Consensus       218 ~~v~~~~sl~ea~~~m~~~~~~~vpVvd~~~g~liGiIt~~dil~~l~~~~  268 (351)
                      +++.+++++.+++++|.+++.+++||+|+  |+++|+||++|+++++.+..
T Consensus       111 ~tv~~~~~l~~v~~~~~~~~~~~l~V~d~--g~lvGiIt~~Dil~~l~~~~  159 (169)
T d2j9la1         111 FTVTDLTPMEIVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHIAQMA  159 (169)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHHHC
T ss_pred             EEECCCCcHHHHHHHHHhcCceEEEEEEC--CEEEEEEEHHHHHHHHHHHh
Confidence            99999999999999999999999999875  59999999999999986543