Citrus Sinensis ID: 018743

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC
Secondary Structure (PSIPRED)
cEEEEccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHcHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEEc
Coil and Loop (DISEMBL)
mvmlgkckqpeQASLLFEVMLSDGLKPSVDVYTALVSAYgqsglldeAFSTindmksvsdckpdvyTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVesggchpdifTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSygragmydKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMkhrgmkpnsityCSLVSAYSKAGLIMKVDSILRQvensdvildtpfFNCIISAygqagdveKMGELFLTMKerhcvpdniTFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC
Flexible Loop (DISEMBL)
mvmlgkckqpeQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINdmksvsdckPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIEtfgkaghiEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMkensgkkliqc
Low Complexity Region (SEG)
MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC
Disordered region (IsUnstruct)
*************SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE****FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE***********************
Disordered Region (DISOPRED)
MVMLG**KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC
Disordered Region (DISEMBL)
MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN********
Disordered Region (DISPRO)
MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNxxxxxxxxxxxxxxxxxxxxxSGKKLIQC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q9SCP4	447	Pentatricopeptide repeat-	yes	no	0.766	0.601	0.671	1e-138
Q9FKC3	508	Pentatricopeptide repeat-	no	no	0.943	0.651	0.462	6e-86
Q9SQU6	486	Pentatricopeptide repeat-	no	no	0.974	0.703	0.415	8e-81
Q9LYZ9	819	Pentatricopeptide repeat-	no	no	0.903	0.387	0.287	1e-35
Q9S7Q2	862	Pentatricopeptide repeat-	no	no	0.934	0.380	0.260	7e-33
Q9FMF6	730	Pentatricopeptide repeat-	no	no	0.877	0.421	0.278	8e-33
O82178	591	Pentatricopeptide repeat-	no	no	0.883	0.524	0.265	9e-33
Q9SV96	563	Pentatricopeptide repeat-	no	no	0.911	0.568	0.258	1e-32
Q9FLD8	678	Pentatricopeptide repeat-	no	no	0.911	0.471	0.261	1e-32
Q9ZUE9	536	Pentatricopeptide repeat-	no	no	0.931	0.610	0.265	2e-32

>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1

 Score =  491 bits (1265), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 229/341 (67%), Positives = 281/341 (82%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG CKQP+QASLLFEVMLS+GLKP++DVYT+L+S YG+S LLD+AFST+  MKSVSDCK
Sbjct: 103 VLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCK 162

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV+T+++LI  C K  RFDL++ I+ EMSYLG+ CS VTYNTIIDGYGKA  FEEMES 
Sbjct: 163 PDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESV 222

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M+E G   PD+ TLNS+I +YGN  N+ KME WY+ F LMGV+ DI T NIL  S+G
Sbjct: 223 LADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFG 282

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AGMY KM SVMDFM+KRFF  T VTYNIVIETFGKAG IEKM++ F+KMK++G+KPNSI
Sbjct: 283 KAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSI 342

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TYCSLV+AYSKAGL++K+DS+LRQ+ NSDV+LDTPFFNCII+AYGQAGD+  M EL++ M
Sbjct: 343 TYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQM 402

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           +ER C PD ITFATMI+ Y A G+ +A Q LE +MI+  EN
Sbjct: 403 EERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSGEN 443

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2

 Score =  317 bits (813), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 154/333 (46%), Positives = 224/333 (67%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +VMLGKCKQPE+A  LF+ M+++G   + +VYTALVSAY +SG  D AF+ +  MKS  +
Sbjct: 157 IVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHN 216

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYSILIKS  +   FD ++ +L++M   GI  + +TYNT+ID YGKAK F EME
Sbjct: 217 CQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEME 276

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S+   M+    C PD +T+NS + A+G +G IE ME  Y +F   G++ +I+T NIL  S
Sbjct: 277 STLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDS 336

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG++G Y KM +VM++MQK  +  T+VTYN+VI+ FG+AG +++ME  F+ M+   + P+
Sbjct: 337 YGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPS 396

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CSLV AY +A    K+  +LR +ENSD+ LD  FFNC++ AYG+     +M  +  
Sbjct: 397 CVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLE 456

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            M+++   PD IT+ TM++AY   GMT   + L
Sbjct: 457 LMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 489

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2 SV=1

 Score =  300 bits (769), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 145/349 (41%), Positives = 223/349 (63%), Gaps = 7/349 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LGK  QP +A  LF+ ML +GL+P+V++YTAL++AY +S L+D+AFS ++ MKS   
Sbjct: 131 LVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQ 190

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYS L+K+C    +FDL++ +  EM    I  + VT N ++ GYG+  +F++ME
Sbjct: 191 CQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQME 250

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M+ S  C PD++T+N ++S +GN G I+ ME WY +F   G++ + +T NIL  S
Sbjct: 251 KVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGS 310

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM SVM++M+K  F  T  TYN +IE F   G  + ME  F +M+  GMK +
Sbjct: 311 YGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKAD 370

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L++ Y+ AGL  KV S ++     ++  +T F+N +ISA  +A D+ +M  +++
Sbjct: 371 TKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYI 430

Query: 301 TMKERHCVPDNITFATMIQAYNALGMT-------EAAQNLENKMIAMKE 342
            MKER CV D+ TF  M++AY   GM        +  Q L ++ +A KE
Sbjct: 431 RMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMDRTVATKE 479

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 3/320 (0%)

Query: 3   MLGKCKQP-EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           + GK   P  + + L E M SDG+ P    Y  L++   +  L  EA     +MK+    
Sbjct: 252 VFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAG-F 310

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
             D  TY+ L+    K HR     K+L EM   G   S VTYN++I  Y +    +E   
Sbjct: 311 SYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME 370

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             + M E G   PD+FT  +++S +  +G +E     + E    G K +I T N   K Y
Sbjct: 371 LKNQMAEKG-TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY 429

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G  G + +M  + D +      P +VT+N ++  FG+ G   ++   FK+MK  G  P  
Sbjct: 430 GNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 489

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            T+ +L+SAYS+ G   +  ++ R++ ++ V  D   +N +++A  + G  E+  ++   
Sbjct: 490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAE 549

Query: 302 MKERHCVPDNITFATMIQAY 321
           M++  C P+ +T+ +++ AY
Sbjct: 550 MEDGRCKPNELTYCSLLHAY 569

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1

 Score =  141 bits (356), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 182/372 (48%), Gaps = 44/372 (11%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L KC +      +F+ M S G+  SV  YTAL++AYG++G  + +   ++ MK+     
Sbjct: 156 LLDKCLE------VFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKN-EKIS 208

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTII-------------- 107
           P + TY+ +I +C +    ++ +  + AEM + GI+   VTYNT++              
Sbjct: 209 PSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEM 268

Query: 108 ------DG---------------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
                 DG               +GK ++ E++      M  SGG  PDI + N ++ AY
Sbjct: 269 VFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMA-SGGSLPDITSYNVLLEAY 327

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             SG+I++    +++    G   +  T ++L   +G++G YD +R +   M+     P  
Sbjct: 328 AKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDA 387

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            TYNI+IE FG+ G+ +++   F  M    ++P+  TY  ++ A  K GL      IL+ 
Sbjct: 388 ATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQY 447

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +  +D++  +  +  +I A+GQA   E+    F TM E    P   TF +++ ++   G+
Sbjct: 448 MTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGL 507

Query: 327 TEAAQNLENKMI 338
            + ++ + ++++
Sbjct: 508 VKESEAILSRLV 519

Involved in plastid gene expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1

 Score =  141 bits (355), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 165/345 (47%), Gaps = 37/345 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +  ++L +++ S G+ P V  Y +L+  Y + GL+  A   ++DM++   CKP+VY+Y+I
Sbjct: 371 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRN-KGCKPNVYSYTI 429

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K  + D    +L EMS  G++ + V +N +I  + K  +  E    F  M   G
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489

Query: 131 GCHPDIFTLNSMIS-----------------------------------AYGNSGNIEKM 155
            C PD++T NS+IS                                   A+   G I++ 
Sbjct: 490 -CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 548

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            K  NE    G   D  T N L K   RAG  DK RS+ + M +    P+ ++ NI+I  
Sbjct: 549 RKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILING 608

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             ++G +E+  E+ K+M  RG  P+ +T+ SL++   +AG I    ++ R+++   +  D
Sbjct: 609 LCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 668

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           T  FN ++S   + G V     L     E   VP++ T++ ++Q+
Sbjct: 669 TVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQS 713

Arabidopsis thaliana (taxid: 3702)

>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1

 Score =  141 bits (355), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 163/316 (51%), Gaps = 6/316 (1%)

Query: 11  EQASLLFEVMLSDGLKP---SVDVYTALVSAY-GQSGLLDEAFSTINDMKSVSDCKPDVY 66
           E+A ++   M +  + P    V VY A +     + G  +EA      MK    CKP   
Sbjct: 207 ERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKR-DRCKPTTE 265

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TY+++I    K  +  +  K+  EM     + +  TY  +++ + +    E+ E  F  +
Sbjct: 266 TYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQL 325

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            E G   PD++  N+++ +Y  +G      + ++    MG + D  + NI+  +YGRAG+
Sbjct: 326 QEDG-LEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 384

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           +    +V + M++    PT+ ++ +++  + KA  + K E   K+M   G++P++    S
Sbjct: 385 HSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNS 444

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           +++ Y + G   K++ IL ++EN     D   +N +I+ YG+AG +E++ ELF+ +KE++
Sbjct: 445 MLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKN 504

Query: 307 CVPDNITFATMIQAYN 322
             PD +T+ + I AY+
Sbjct: 505 FRPDVVTWTSRIGAYS 520

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2 SV=1

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 155/325 (47%), Gaps = 5/325 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++GK  Q   A  LF  M + G +P   VY AL++A+     ++  L++    ++ MK +
Sbjct: 142 VMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGI 201

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C+P+V TY+IL+++  +  + D +  +  ++    +     T+N ++D YGK    +E
Sbjct: 202 ERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKE 261

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           ME+  + M  S  C PDI T N +I +YG     EKME+ +        K  + T N + 
Sbjct: 262 MEAVLTRM-RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMI 320

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YG+A M DK   V   M    + P+ +TY  +I  +G  G + +  E F+++      
Sbjct: 321 INYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRV 380

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
             + T  +++  Y + GL ++ D +        V  D   +  +  AY +A   E++  L
Sbjct: 381 LKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQIL 440

Query: 299 FLTMKERHCVPDNITFATMIQAYNA 323
              M++   VP+   F   ++ + +
Sbjct: 441 MKKMEKDGIVPNKRFFLEALEVFGS 465

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 164/359 (45%), Gaps = 39/359 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + KQ + A  LF+ M    L P    Y+ L++++G+ G+ D A S +  M+       D+
Sbjct: 167 RAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQ-DRVSGDL 225

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             YS LI+   +   +     I + +   GI    V YN++I+ YGKAK F E       
Sbjct: 226 VLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKE 285

Query: 126 MVESG----------------------------------GCHPDIFTLNSMISAYGNSGN 151
           M E+G                                   C  D+ T N MI  YG    
Sbjct: 286 MNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDM 345

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +++ ++ +     M ++ ++ + N + + YG A ++ +   +   MQ++     VVTYN 
Sbjct: 346 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT 405

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+ +GK    EK     ++M+ RG++PN+ITY +++S + KAG + +  ++ +++ +S 
Sbjct: 406 MIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSG 465

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           V +D   +  +I AY + G +     L   +K    +PDNI   T I      G TE A
Sbjct: 466 VEIDQVLYQTMIVAYERVGLMGHAKRLLHELK----LPDNIPRETAITILAKAGRTEEA 520

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 167/361 (46%), Gaps = 34/361 (9%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSG-------LLDEAF-------------STI 52
           A  +FE M SDG+ P+  +   LVS++ + G       LL ++F             +T+
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTL 181

Query: 53  NDMKSVSD-------------CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 99
             +  V D             C  D  T++ILI+      + +   ++L  MS  G E  
Sbjct: 182 VKLDRVEDAMKLFDEHLRFQSCN-DTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPD 240

Query: 100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
            VTYNT+I G+ K+ +  +    F  +     C PD+ T  SMIS Y  +G + +     
Sbjct: 241 IVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLL 300

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           ++   +G+     T N+L   Y +AG       +   M     FP VVT+  +I+ + + 
Sbjct: 301 DDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRV 360

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G + +    +++M  RGM PN+ TY  L++A      ++K   +L Q+ + D+I     +
Sbjct: 361 GQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMY 420

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I  + +AG V +   +   M+++ C PD ITF  +I  +   G    A ++ +KM+A
Sbjct: 421 NPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVA 480

Query: 340 M 340
           +
Sbjct: 481 I 481

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
297736301	485	unnamed protein product [Vitis vinifera]	0.891	0.645	0.769	1e-161
359487410	538	PREDICTED: pentatricopeptide repeat-cont	0.982	0.641	0.769	1e-159
356552149	481	PREDICTED: pentatricopeptide repeat-cont	0.874	0.638	0.735	1e-158
255553476	486	pentatricopeptide repeat-containing prot	0.863	0.623	0.744	1e-156
224104097	474	predicted protein [Populus trichocarpa]	0.868	0.643	0.737	1e-155
357458279	511	Pentatricopeptide repeat-containing prot	0.982	0.675	0.710	1e-149
449436321	477	PREDICTED: pentatricopeptide repeat-cont	0.974	0.716	0.690	1e-143
75265624	447	RecName: Full=Pentatricopeptide repeat-c	0.766	0.601	0.671	1e-136
334185941	499	tetratricopeptide repeat domain-containi	0.977	0.687	0.666	1e-136
242037185	480	hypothetical protein SORBIDRAFT_01g04960	0.951	0.695	0.628	1e-125

>gi|297736301|emb|CBI24939.3| unnamed protein product [Vitis vinifera]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/351 (76%), Positives = 304/351 (86%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKCKQPEQASLLFEVMLS+GL+P++DVYTALVSAYG SG LD+AF T+ DMKSVSD
Sbjct: 135 LMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSD 194

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDVYTYSILIK CT   RFDLIE+I  EMSYLGIECS VTYNTIIDGYGKA  FE ME
Sbjct: 195 CKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELME 254

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           SS + M+ESG C PDIFTLNS I AYGNSG IEKMEKWY+EF LMG++ DI+T NIL +S
Sbjct: 255 SSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRS 314

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+A MY+KM SVM+FM+KRF+ PT+VT+NIVIE FG+ G+IEKMEE+F KMKH+G+KPN
Sbjct: 315 YGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPN 374

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           SITYCSLVSAYSKAG + KVDSILRQ+ENSDV LDTPFFNC++SAYGQAGDVE+MGELFL
Sbjct: 375 SITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFL 434

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
            MKER C PDNITFATMIQAYNA GM EAAQNLE  MI  K  SG +LI C
Sbjct: 435 VMKERKCKPDNITFATMIQAYNAQGMIEAAQNLEVNMITTKNKSGTRLIGC 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein At3g53170-like [Vitis vinifera]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/347 (76%), Positives = 301/347 (86%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKCKQPEQASLLFEVMLS+GL+P++DVYTALVSAYG SG LD+AF T+ DMKSVSD
Sbjct: 135 LMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSD 194

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDVYTYSILIK CT   RFDLIE+I  EMSYLGIECS VTYNTIIDGYGKA  FE ME
Sbjct: 195 CKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELME 254

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           SS + M+ESG C PDIFTLNS I AYGNSG IEKMEKWY+EF LMG++ DI+T NIL +S
Sbjct: 255 SSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRS 314

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+A MY+KM SVM+FM+KRF+ PT+VT+NIVIE FG+ G+IEKMEE+F KMKH+G+KPN
Sbjct: 315 YGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPN 374

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           SITYCSLVSAYSKAG + KVDSILRQ+ENSDV LDTPFFNC++SAYGQAGDVE+MGELFL
Sbjct: 375 SITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFL 434

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
            MKER C PDNITFATMIQAYNA GM EAAQNLE  MI  K  SG +
Sbjct: 435 VMKERKCKPDNITFATMIQAYNAQGMIEAAQNLEVNMITTKNKSGTR 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53170-like [Glycine max]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 258/351 (73%), Positives = 305/351 (86%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKC+QPE+ASLLFE+MLS+GLKP+VDVYTALVSAYGQSGLLD+AFST+ DMKSV D
Sbjct: 131 LMMLGKCRQPEEASLLFEIMLSEGLKPTVDVYTALVSAYGQSGLLDQAFSTVEDMKSVVD 190

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDVYTYSILI+ C KF RFDLIE +LAEMSYLGI+C+ VTYN+IIDGYGKA  FE+M+
Sbjct: 191 CEPDVYTYSILIRCCAKFRRFDLIEHVLAEMSYLGIKCNCVTYNSIIDGYGKASMFEQMD 250

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            + + M+E+G  HPD+FTLNS + AYGN+G I+KMEKWY+EF LMG+K DI T N + KS
Sbjct: 251 DALNDMIENGNSHPDVFTLNSFVGAYGNAGQIDKMEKWYDEFQLMGIKPDITTFNTMIKS 310

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AGMY+KM++VMDFM+KRFF PT+VTYN VIE FGKAG IEKM+++F KMKH G+KPN
Sbjct: 311 YGKAGMYEKMKTVMDFMEKRFFTPTIVTYNTVIEVFGKAGEIEKMDQHFLKMKHLGVKPN 370

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           SITYCSLVSAYSK G I KVDSI+R VENSDV+LDTPFFNCIISAYGQAG+++KMGELFL
Sbjct: 371 SITYCSLVSAYSKVGCIDKVDSIMRHVENSDVVLDTPFFNCIISAYGQAGNLKKMGELFL 430

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
            M+ER C PDNITFA MIQ+YN  GMTEA QNLEN MI+ K + G KLI C
Sbjct: 431 AMRERKCEPDNITFACMIQSYNTQGMTEAVQNLENMMISAKSSLGTKLIGC 481

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 257/345 (74%), Positives = 303/345 (87%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKC+QPE+A LLFEVM ++GL+P++DVYTALVSAYG+SGLL +AFST+++MKSVSD
Sbjct: 135 LMMLGKCRQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGESGLLAKAFSTVDEMKSVSD 194

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDVYTYS+LI  CTK HRFDLI +IL+EMSYLG+ECS VT+NTII+GYGKAK F EME
Sbjct: 195 CKPDVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIINGYGKAKMFREME 254

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           +S + M+E G   PD+FT NS+I AYGNSG IEKMEKWYNEF LMG+  DI+T NIL KS
Sbjct: 255 NSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPDIKTFNILIKS 314

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AGMY+K+ SV++FM+KRFF PTVVTYNI+IETFG+AG IE M+EYFK MKH GMKPN
Sbjct: 315 YGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDIENMDEYFKTMKHLGMKPN 374

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           +ITYCSLVSAYSKAGL+MKV+SILRQVENSDV+LDT FFNCII+AYGQAGDV+KM ELFL
Sbjct: 375 AITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQAGDVDKMAELFL 434

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
            M+ER C+PDN+TFATMIQAY   GMTEAAQ LE  M+A K NSG
Sbjct: 435 EMRERECMPDNVTFATMIQAYRGQGMTEAAQALEKMMLAAKGNSG 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104097|ref|XP_002313317.1| predicted protein [Populus trichocarpa] gi|222849725|gb|EEE87272.1| predicted protein [Populus trichocarpa]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 256/347 (73%), Positives = 301/347 (86%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKC+QPE+ S LFEVMLSDGLKP++DVYTALVSAYG+SG LD+AFS + +MK++S+
Sbjct: 122 LMMLGKCRQPEEGSFLFEVMLSDGLKPTIDVYTALVSAYGKSGQLDKAFSIVVEMKAISE 181

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDVYTYSILI  C K HRF+LI  ILAEMSYLGIECS VTYNTIIDGYGKAK FEEME
Sbjct: 182 CKPDVYTYSILINCCIKLHRFELIRGILAEMSYLGIECSTVTYNTIIDGYGKAKMFEEME 241

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           ++ + M+ESG   PD+FT NS+I AYG+ G I+KMEKWY EF LMG++ DI+T NIL +S
Sbjct: 242 NTLTDMIESGSSVPDLFTFNSIIGAYGSKGRIDKMEKWYTEFQLMGLRQDIKTFNILIRS 301

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AGMY KMRSV++FM+KRFF P++VT+NI IETFGKAG IE MEEYF KMKH G+KPN
Sbjct: 302 YGKAGMYGKMRSVLEFMEKRFFSPSIVTHNIFIETFGKAGDIETMEEYFSKMKHLGIKPN 361

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           ++TYCSLVSAYSKAG IMKVDSILRQVENSDVILDTPFFNC+ISAYG+AGD+EKM ELFL
Sbjct: 362 TVTYCSLVSAYSKAGHIMKVDSILRQVENSDVILDTPFFNCVISAYGRAGDIEKMSELFL 421

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
            M+ R C PD+ITFATMIQAYNA GM EAAQ +EN MIA ++NSG +
Sbjct: 422 GMEGRKCKPDSITFATMIQAYNAQGMIEAAQGMENMMIATRKNSGMR 468

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 245/345 (71%), Positives = 293/345 (84%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ML KCKQP++AS L+E ML +GLKP+VDV TALVSAYGQSGL   AFSTI DMKSV D
Sbjct: 139 LMMLSKCKQPKEASQLYETMLFEGLKPTVDVLTALVSAYGQSGLFRHAFSTIEDMKSVVD 198

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDVYTYS+LI  C KF RFDLIE++LA+MSY GIEC++VTYN+IIDGYGKA  FE+ME
Sbjct: 199 CKPDVYTYSVLISCCAKFRRFDLIERVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQME 258

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           +S + M+E+  C PD+FTLNS+I +YGN G I+KMEKWY+EF LM +K DI+T N++ KS
Sbjct: 259 NSLTDMIENENCQPDVFTLNSLIGSYGNGGKIDKMEKWYDEFQLMSIKPDIKTFNMMIKS 318

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AGMYDKM+SVMDFM++RFF PT+VTYN VIE +GKAG IEKM+++FK MKH GMKPN
Sbjct: 319 YGKAGMYDKMKSVMDFMERRFFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKHIGMKPN 378

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           S+TYCSLV+AYSKAGLI K+DSILR VENSDVILDTPFFNCIISAYGQ GD++KMGELFL
Sbjct: 379 SVTYCSLVNAYSKAGLIRKIDSILRHVENSDVILDTPFFNCIISAYGQVGDLKKMGELFL 438

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
            M+ R C PD  TF  MIQAYN  G+TEAA+NLE  MI+ K++SG
Sbjct: 439 AMRARKCEPDRTTFTCMIQAYNTQGITEAAKNLETMMISAKDSSG 483

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53170-like [Cucumis sativus] gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53170-like [Cucumis sativus]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 236/342 (69%), Positives = 287/342 (83%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++LGKCKQPEQASLLFE+M S+GLKPS+DVYTALVSAYGQSGLL +A ST+++MKS+SD
Sbjct: 134 LMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHKAISTVDEMKSISD 193

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDV+TYSILI  CT+  RFDL++KILA+MS LGI C+ VTYNTII+G+GKAK FE+ME
Sbjct: 194 CKPDVHTYSILIDCCTRLRRFDLLKKILADMSCLGITCNTVTYNTIINGFGKAKMFEQME 253

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S    M+ES  C PD+ T N+ I AYGNS  IEKMEKWY EF LMG++ DI T N +  S
Sbjct: 254 SLLLEMIESDSCPPDLITFNTFIRAYGNSEQIEKMEKWYKEFQLMGIEPDIWTYNSMISS 313

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AGMYDKM+SV++FM+KRFF PT+VT N +I++FG+AG+IE+MEEYFK MK +GMKPN
Sbjct: 314 YGKAGMYDKMKSVLNFMEKRFFSPTIVTMNTIIDSFGRAGNIEEMEEYFKNMKFQGMKPN 373

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           S+TYCSLV+AY K+G + KVDSILRQ+ENSDV+ DTP FNC+I+ YGQAG+V KMGELFL
Sbjct: 374 SVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPLFNCLINVYGQAGNVRKMGELFL 433

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
            MKE  CVPD ITFATMI+A  A GMTE AQ LENK+IA  +
Sbjct: 434 EMKENKCVPDGITFATMIRALKAQGMTEDAQRLENKLIATND 475

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75265624|sp|Q9SCP4.1|PP279_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53170 gi|6630737|emb|CAB64220.1| nodulin / glutamate-ammonia ligase-like protein [Arabidopsis thaliana]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/341 (67%), Positives = 281/341 (82%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG CKQP+QASLLFEVMLS+GLKP++DVYT+L+S YG+S LLD+AFST+  MKSVSDCK
Sbjct: 103 VLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCK 162

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV+T+++LI  C K  RFDL++ I+ EMSYLG+ CS VTYNTIIDGYGKA  FEEMES 
Sbjct: 163 PDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESV 222

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M+E G   PD+ TLNS+I +YGN  N+ KME WY+ F LMGV+ DI T NIL  S+G
Sbjct: 223 LADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFG 282

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AGMY KM SVMDFM+KRFF  T VTYNIVIETFGKAG IEKM++ F+KMK++G+KPNSI
Sbjct: 283 KAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSI 342

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TYCSLV+AYSKAGL++K+DS+LRQ+ NSDV+LDTPFFNCII+AYGQAGD+  M EL++ M
Sbjct: 343 TYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQM 402

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           +ER C PD ITFATMI+ Y A G+ +A Q LE +MI+  EN
Sbjct: 403 EERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSGEN 443

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185941|ref|NP_190885.5| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|332645523|gb|AEE79044.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/345 (66%), Positives = 283/345 (82%), Gaps = 2/345 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG CKQP+QASLLFEVMLS+GLKP++DVYT+L+S YG+S LLD+AFST+  MKSVSDCK
Sbjct: 153 VLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCK 212

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV+T+++LI  C K  RFDL++ I+ EMSYLG+ CS VTYNTIIDGYGKA  FEEMES 
Sbjct: 213 PDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESV 272

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M+E G   PD+ TLNS+I +YGN  N+ KME WY+ F LMGV+ DI T NIL  S+G
Sbjct: 273 LADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFG 332

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AGMY KM SVMDFM+KRFF  T VTYNIVIETFGKAG IEKM++ F+KMK++G+KPNSI
Sbjct: 333 KAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSI 392

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TYCSLV+AYSKAGL++K+DS+LRQ+ NSDV+LDTPFFNCII+AYGQAGD+  M EL++ M
Sbjct: 393 TYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQM 452

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
           +ER C PD ITFATMI+ Y A G+ +A Q LE +MI+   + GKK
Sbjct: 453 EERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMIS--SDIGKK 495

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242037185|ref|XP_002465987.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor] gi|241919841|gb|EER92985.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 210/334 (62%), Positives = 263/334 (78%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKC+QP  A+ LF+ MLS+ L+P+ DVYTALV AYG SGLLDEA + +  MK  +D
Sbjct: 133 LMMLGKCRQPGPAAALFKAMLSERLRPTADVYTALVGAYGYSGLLDEALAAVEQMKGAAD 192

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPD YT+S+LI  C K  RFDLI  +L EMSYLGIEC++V +N IIDGYGKA  FEEME
Sbjct: 193 CKPDGYTFSVLINCCAKSRRFDLIPAVLDEMSYLGIECNSVIHNAIIDGYGKAAMFEEME 252

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            + SAM+ESG   PDI+T+NS+I AYGN G  ++MEK Y+EF LMGV+ D +T NI+ KS
Sbjct: 253 GALSAMLESGSNVPDIYTMNSVIGAYGNHGRTDEMEKSYSEFQLMGVEPDTKTFNIMIKS 312

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AGMYDKM S+  +M+KRFF PT VT+N VIE FG+AG+IEKME YF+ MK +G+KPN
Sbjct: 313 YGKAGMYDKMMSIFRYMKKRFFSPTAVTFNTVIECFGRAGNIEKMEYYFRLMKIQGVKPN 372

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ITYCSLV+ YSKAGL+ KV  I+RQ EN++V+LDTPFFNC+ISAY ++GD++ M E+  
Sbjct: 373 PITYCSLVNGYSKAGLLDKVPGIIRQTENTNVVLDTPFFNCVISAYAKSGDIKIMEEMLQ 432

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
            MKE+ C PD IT+ATMIQAY A GM EAA+ LE
Sbjct: 433 LMKEKKCKPDKITYATMIQAYTAQGMDEAARLLE 466

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2081041	486	PPR2 "pentatricopeptide repeat	0.957	0.691	0.422	2.5e-74
TAIR|locus:2151281	819	AT5G02860 [Arabidopsis thalian	0.903	0.387	0.287	1.5e-36
TAIR|locus:2122561	563	EMB2453 "EMBRYO DEFECTIVE 2453	0.977	0.609	0.25	3.8e-34
TAIR|locus:2150024	729	AT5G01110 [Arabidopsis thalian	0.943	0.454	0.256	1.8e-32
TAIR|locus:2093472	642	AT3G16010 [Arabidopsis thalian	0.945	0.517	0.276	6.6e-32
TAIR|locus:2064707	536	AT2G06000 "AT2G06000" [Arabido	0.874	0.572	0.275	1.1e-31
TAIR|locus:1005716169	831	AT5G21222 [Arabidopsis thalian	0.928	0.392	0.271	1.5e-31
TAIR|locus:2027166	862	PTAC2 "plastid transcriptional	0.925	0.377	0.261	2e-31
TAIR|locus:2015494	629	RPF3 "RNA processing factor 3"	0.860	0.480	0.301	2.2e-31
TAIR|locus:2061310	918	GUN1 "AT2G31400" [Arabidopsis	0.811	0.310	0.268	3e-31

TAIR|locus:2081041 PPR2 "pentatricopeptide repeat 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 142/336 (42%), Positives = 218/336 (64%)

Query:     1 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
             +V+LGK  QP +A  LF+ ML +GL+P+V++YTAL++AY +S L+D+AFS ++ MKS   
Sbjct:   131 LVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQ 190

Query:    61 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             C+PDV+TYS L+K+C    +FDL++ +  EM    I  + VT N ++ GYG+  +F++ME
Sbjct:   191 CQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQME 250

Query:   121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                S M+ S  C PD++T+N ++S +GN G I+ ME WY +F   G++ + +T NIL  S
Sbjct:   251 KVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGS 310

Query:   181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             YG+  MYDKM SVM++M+K  F  T  TYN +IE F   G  + ME  F +M+  GMK +
Sbjct:   311 YGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKAD 370

Query:   241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             + T+C L++ Y+ AGL  KV S ++     ++  +T F+N +ISA  +A D+ +M  +++
Sbjct:   371 TKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYI 430

Query:   301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
              MKER CV D+ TF  M++AY   GM +    LE +
Sbjct:   431 RMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQE 466

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0048868 "pollen tube development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0019843 "rRNA binding" evidence=IDA

TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.5e-36, P = 1.5e-36
 Identities = 92/320 (28%), Positives = 157/320 (49%)

Query:     3 MLGKCKQP-EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
             + GK   P  + + L E M SDG+ P    Y  L++   +  L  EA     +MK+    
Sbjct:   252 VFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAG-F 310

Query:    62 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
               D  TY+ L+    K HR     K+L EM   G   S VTYN++I  Y +    +E   
Sbjct:   311 SYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME 370

Query:   122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
               + M E G   PD+FT  +++S +  +G +E     + E    G K +I T N   K Y
Sbjct:   371 LKNQMAEKG-TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY 429

Query:   182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
             G  G + +M  + D +      P +VT+N ++  FG+ G   ++   FK+MK  G  P  
Sbjct:   430 GNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 489

Query:   242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
              T+ +L+SAYS+ G   +  ++ R++ ++ V  D   +N +++A  + G  E+  ++   
Sbjct:   490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAE 549

Query:   302 MKERHCVPDNITFATMIQAY 321
             M++  C P+ +T+ +++ AY
Sbjct:   550 MEDGRCKPNELTYCSLLHAY 569

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122561 EMB2453 "EMBRYO DEFECTIVE 2453" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 3.8e-34, P = 3.8e-34
 Identities = 87/348 (25%), Positives = 164/348 (47%)

Query:     3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
             ++GK  Q   A  LF  M + G +P   VY AL++A+     ++  L++    ++ MK +
Sbjct:   142 VMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGI 201

Query:    59 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               C+P+V TY+IL+++  +  + D +  +  ++    +     T+N ++D YGK    +E
Sbjct:   202 ERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKE 261

Query:   119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             ME+  + M  S  C PDI T N +I +YG     EKME+ +        K  + T N + 
Sbjct:   262 MEAVLTRM-RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMI 320

Query:   179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
              +YG+A M DK   V   M    + P+ +TY  +I  +G  G + +  E F+++      
Sbjct:   321 INYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRV 380

Query:   239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
               + T  +++  Y + GL ++ D +        V  D   +  +  AY +A   E++  L
Sbjct:   381 LKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQIL 440

Query:   299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346
                M++   VP+   F   ++ + +      ++N ++   +   +S K
Sbjct:   441 MKKMEKDGIVPNKRFFLEALEVFGSRLPGSGSENRKSTRSSRSRDSPK 488

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 86/335 (25%), Positives = 162/335 (48%)

Query:     7 CK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
             CK  + E+       +   G+ P +  Y  L+SAY   GL++EAF  +N M       P 
Sbjct:   246 CKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPG-KGFSPG 304

Query:    65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             VYTY+ +I    K  +++  +++ AEM   G+   + TY +++    K     E E  FS
Sbjct:   305 VYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFS 364

Query:   125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
              M  S    PD+   +SM+S +  SGN++K   ++N     G+  D     IL + Y R 
Sbjct:   365 DM-RSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRK 423

Query:   185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
             GM     ++ + M ++     VVTYN ++    K   + + ++ F +M  R + P+S T 
Sbjct:   424 GMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTL 483

Query:   245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
               L+  + K G +     + ++++   + LD   +N ++  +G+ GD++   E++  M  
Sbjct:   484 TILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVS 543

Query:   305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             +  +P  I+++ ++ A  + G    A  + ++MI+
Sbjct:   544 KEILPTPISYSILVNALCSKGHLAEAFRVWDEMIS 578

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2093472 AT3G16010 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 6.6e-32, P = 6.6e-32
 Identities = 93/336 (27%), Positives = 153/336 (45%)

Query:     4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
             LG+ K   +A  +F        KP+   Y +++    Q G  ++      +M +  DC P
Sbjct:   172 LGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFP 231

Query:    64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
             D  TYS LI S  K  R D   ++  EM    ++ +   Y T++  Y K  K E+    F
Sbjct:   232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291

Query:   124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
               M +  GC P ++T   +I   G +G +++   +Y +    G+  D+  LN L    G+
Sbjct:   292 EEM-KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGK 350

Query:   184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHRGMKPNSI 242
              G  +++ +V   M      PTVV+YN VI+  F    H+ ++  +F KMK   + P+  
Sbjct:   351 VGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEF 410

Query:   243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC-IISAYGQAGDVEKMGELFLT 301
             TY  L+  Y K   + K   +L +++        P   C +I+A G+A   E   ELF  
Sbjct:   411 TYSILIDGYCKTNRVEKALLLLEEMDEKG-FPPCPAAYCSLINALGKAKRYEAANELFKE 469

Query:   302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +KE      +  +A MI+ +   G    A +L N+M
Sbjct:   470 LKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEM 505

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2064707 AT2G06000 "AT2G06000" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 1.1e-31, P = 1.1e-31
 Identities = 86/312 (27%), Positives = 154/312 (49%)

Query:    31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
             V  +L++   +   +++A    ++      C  D  T++ILI+      + +   ++L  
Sbjct:   173 VVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCN-DTKTFNILIRGLCGVGKAEKALELLGV 231

Query:    91 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG-CHPDIFTLNSMISAYGNS 149
             MS  G E   VTYNT+I G+ K+ +  +    F   V+SG  C PD+ T  SMIS Y  +
Sbjct:   232 MSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKD-VKSGSVCSPDVVTYTSMISGYCKA 290

Query:   150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
             G + +     ++   +G+     T N+L   Y +AG       +   M     FP VVT+
Sbjct:   291 GKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTF 350

Query:   210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
               +I+ + + G + +    +++M  RGM PN+ TY  L++A      ++K   +L Q+ +
Sbjct:   351 TSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLAS 410

Query:   270 SDVILDTPF-FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
              D+I   PF +N +I  + +AG V +   +   M+++ C PD ITF  +I  +   G   
Sbjct:   411 KDII-PQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMF 469

Query:   329 AAQNLENKMIAM 340
              A ++ +KM+A+
Sbjct:   470 EAVSIFHKMVAI 481

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716169 AT5G21222 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.5e-31, P = 1.5e-31
 Identities = 90/332 (27%), Positives = 158/332 (47%)

Query:     9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
             +P++A  +F  ++ +G KPS+  YT LV+A  +        S I+ ++  +  KPD   +
Sbjct:   334 RPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEK-NGLKPDTILF 392

Query:    69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
             + +I + ++    D   KI  +M   G + +A T+NT+I GYGK  K EE       M+ 
Sbjct:   393 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLR 452

Query:   129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLNILTKSYGRAGM 186
                  P+  T N ++ A+ N   IE  E W   + +   GVK D+ T N L K+Y R G 
Sbjct:   453 DEMLQPNDRTCNILVQAWCNQRKIE--EAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGS 510

Query:   187 YDKMRS-VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
                    ++  M      P V T   ++  + + G +E+   +F +MK  G+ PN   + 
Sbjct:   511 TCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFN 570

Query:   246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
             SL+  +     +  V  ++  +E   V  D   F+ +++A+   GD+++  E++  M E 
Sbjct:   571 SLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEG 630

Query:   306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                PD   F+ + + Y   G  E A+ + N+M
Sbjct:   631 GIDPDIHAFSILAKGYARAGEPEKAEQILNQM 662

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 86/329 (26%), Positives = 167/329 (50%)

Query:    12 QASL-LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF-STINDMKSVSDCKPDVYTYS 69
             + SL L + M ++ + PS+  Y  +++A  + GL  E       +M+     +PD+ TY+
Sbjct:   193 ETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRH-EGIQPDIVTYN 251

Query:    70 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
              L+ +C      D  E +   M+  GI     TY+ +++ +GK ++ E++      M  S
Sbjct:   252 TLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMA-S 310

Query:   130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
             GG  PDI + N ++ AY  SG+I++    +++    G   +  T ++L   +G++G YD 
Sbjct:   311 GGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDD 370

Query:   190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             +R +   M+     P   TYNI+IE FG+ G+ +++   F  M    ++P+  TY  ++ 
Sbjct:   371 VRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIF 430

Query:   250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
             A  K GL      IL+ +  +D++  +  +  +I A+GQA   E+    F TM E    P
Sbjct:   431 ACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNP 490

Query:   310 DNITFATMIQAYNALGMTEAAQNLENKMI 338
                TF +++ ++   G+ + ++ + ++++
Sbjct:   491 SIETFHSLLYSFARGGLVKESEAILSRLV 519

GO:0009507 "chloroplast" evidence=IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0042793 "transcription from plastid promoter" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 2.2e-31, P = 2.2e-31
 Identities = 93/308 (30%), Positives = 156/308 (50%)

Query:    13 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
             AS L   M+   + P+V  ++AL+ A+ + G L EA    ++M   S   PD++TYS LI
Sbjct:   309 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLI 367

Query:    73 KSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
                    R D  + +   M  +  +C  + VTYNT+I G+ KAK+ EE    F  M + G
Sbjct:   368 NGFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 425

Query:   131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
                  + T N++I     +G+ +  +K + +    GV  DI T +IL     + G  +K 
Sbjct:   426 LVGNTV-TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA 484

Query:   191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
               V +++QK    P + TYNI+IE   KAG +E   + F  +  +G+KPN I Y +++S 
Sbjct:   485 LVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISG 544

Query:   251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + + GL  + D++ R+++    + ++  +N +I A  + GD     EL   M+    V D
Sbjct:   545 FCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGD 604

Query:   311 NITFATMI 318
               T + +I
Sbjct:   605 ASTISMVI 612

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006397 "mRNA processing" evidence=IMP

TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 3.0e-31, P = 3.0e-31
 Identities = 77/287 (26%), Positives = 155/287 (54%)

Query:    11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
             +Q +  F+ M  +G++P    + +L++   + GL + A +  ++M +    + DV++Y+ 
Sbjct:   321 KQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTN-RRIEQDVFSYNT 379

Query:    71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
             L+ +  K  + DL  +ILA+M    I  + V+Y+T+IDG+ KA +F+E  + F  M    
Sbjct:   380 LLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEM-RYL 438

Query:   131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
             G   D  + N+++S Y   G  E+      E   +G+K D+ T N L   YG+ G YD++
Sbjct:   439 GIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEV 498

Query:   191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + V   M++    P ++TY+ +I+ + K G  ++  E F++ K  G++ + + Y +L+ A
Sbjct:   499 KKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDA 558

Query:   251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
               K GL+    S++ ++    +  +   +N II A+G++  +++  +
Sbjct:   559 LCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSAD 605

GO:0003677 "DNA binding" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IMP

GO:0010019 "chloroplast-nucleus signaling pathway" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SCP4	PP279_ARATH	No assigned EC number	0.6715	0.7663	0.6017	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-19
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-17
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-15
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-15
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-14
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-13
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-08
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-07
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	7e-07
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-05
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	2e-05
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
pfam01535	31	pfam01535, PPR, PPR repeat	2e-04
pfam01535	31	pfam01535, PPR, PPR repeat	3e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.001
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.002
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.003
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.004

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 88.4 bits (219), Expect = 4e-19
 Identities = 69/321 (21%), Positives = 142/321 (44%), Gaps = 5/321 (1%)

Query: 17  FEVML---SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 73
             V+      GLK    +YT L+S   +SG +D  F   ++M   +  + +V+T+  LI 
Sbjct: 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGALID 515

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM-VESGGC 132
            C +  +          M    ++   V +N +I   G++   +      + M  E+   
Sbjct: 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PD  T+ +++ A  N+G +++ ++ Y   +   +K   +   I   S  + G +D   S
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           + D M+K+   P  V ++ +++  G AG ++K  E  +  + +G+K  +++Y SL+ A S
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
            A    K   +   +++  +       N +I+A  +   + K  E+   MK     P+ I
Sbjct: 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755

Query: 313 TFATMIQAYNALGMTEAAQNL 333
           T++ ++ A       +   +L
Sbjct: 756 TYSILLVASERKDDADVGLDL 776

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 83.0 bits (205), Expect = 2e-17
 Identities = 72/319 (22%), Positives = 130/319 (40%), Gaps = 43/319 (13%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           +  LV  Y ++G  DEA    + M      +PDVYT+  ++++C          ++ A +
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213

Query: 92  SYLGIECSAVTYNTIIDGYGK------AKK-FEEMES----SFSAMV----ESGGCH--- 133
              G E      N +I  Y K      A+  F+ M      S++AM+    E+G C    
Sbjct: 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL 273

Query: 134 ------------PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
                       PD+ T+ S+ISA    G+     + +      G   D+   N L + Y
Sbjct: 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
              G + +   V   M+ +      V++  +I  + K G  +K  E +  M+   + P+ 
Sbjct: 334 LSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           IT  S++SA +  G +     +    E   +I      N +I  Y +   ++K  E+F  
Sbjct: 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF-- 447

Query: 302 MKERHCVPDN--ITFATMI 318
               H +P+   I++ ++I
Sbjct: 448 ----HNIPEKDVISWTSII 462

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 76.5 bits (188), Expect = 4e-15
 Identities = 63/305 (20%), Positives = 138/305 (45%), Gaps = 11/305 (3%)

Query: 7   CKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           C +  +   +FEV   M++ G++ +V  + AL+    ++G + +AF     M+S  + KP
Sbjct: 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS-KNVKP 540

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLG--IECSAVTYNTIIDGYGKAKKFEEMES 121
           D   ++ LI +C +    D    +LAEM      I+   +T   ++     A + +  + 
Sbjct: 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600

Query: 122 SFSAMVESG--GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            +  + E    G  P+++T+   +++    G+ +     Y++    GVK D    + L  
Sbjct: 601 VYQMIHEYNIKGT-PEVYTI--AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
             G AG  DK   ++   +K+      V+Y+ ++     A + +K  E ++ +K   ++P
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
              T  +L++A  +   + K   +L +++   +  +T  ++ ++ A  +  D +   +L 
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777

Query: 300 LTMKE 304
              KE
Sbjct: 778 SQAKE 782

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 76.1 bits (187), Expect = 5e-15
 Identities = 76/355 (21%), Positives = 150/355 (42%), Gaps = 24/355 (6%)

Query: 5   GKCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLD-------EAFSTINDMK 56
           GK K PE     +  +L DG +K  +D    L+    + GLLD       + F      +
Sbjct: 366 GKRKSPEYIDA-YNRLLRDGRIKDCID----LLEDMEKRGLLDMDKIYHAKFFKACKKQR 420

Query: 57  SVSD----CK----PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 108
           +V +     K    P + T+++L+  C      D   ++L  +   G++     Y T+I 
Sbjct: 421 AVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIS 480

Query: 109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
              K+ K + M   F  MV + G   ++ T  ++I     +G + K    Y       VK
Sbjct: 481 TCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFM--QKRFFFPTVVTYNIVIETFGKAGHIEKME 226
            D    N L  + G++G  D+   V+  M  +     P  +T   +++    AG +++ +
Sbjct: 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
           E ++ +    +K     Y   V++ S+ G      SI   ++   V  D  FF+ ++   
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           G AGD++K  E+    +++      +++++++ A +     + A  L   + ++K
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 64/304 (21%), Positives = 113/304 (37%), Gaps = 76/304 (25%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPD------------- 64
           +M S  +KP   V+ AL+SA GQSG +D AF  + +MK+ +    PD             
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591

Query: 65  ---------VY-------------TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 102
                    VY              Y+I + SC++   +D    I  +M   G++   V 
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
           ++ ++D  G A   ++   +F  + +    G      + +S++ A  N+ N +K  + Y 
Sbjct: 652 FSALVDVAGHAGDLDK---AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           +   + ++                                   PTV T N +I    +  
Sbjct: 709 DIKSIKLR-----------------------------------PTVSTMNALITALCEGN 733

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            + K  E   +MK  G+ PN+ITY  L+ A  +         +L Q +   +  +     
Sbjct: 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR 793

Query: 281 CIIS 284
           CI  
Sbjct: 794 CITG 797

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 83/375 (22%), Positives = 139/375 (37%), Gaps = 49/375 (13%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDV--YTALVSAYGQSGLLDEAFSTINDMKSV 58
           + M  KC     A L+F+ M      P  D   + A++S Y ++G   E       M+ +
Sbjct: 229 ITMYVKCGDVVSARLVFDRM------PRRDCISWNAMISGYFENGECLEGLELFFTMREL 282

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S   PD+ T + +I +C       L  ++   +   G        N++I  Y     + E
Sbjct: 283 S-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E  FS M        D  +  +MIS Y  +G  +K  + Y       V  D  T+  + 
Sbjct: 342 AEKVFSRMETK-----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM------ 232
            +    G  D    + +  +++     VV  N +IE + K   I+K  E F  +      
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456

Query: 233 -----------KHRG-------------MKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
                       +R              +KPNS+T  + +SA ++ G +M    I   V 
Sbjct: 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
            + +  D    N ++  Y + G +      F    E+  V  NI    ++  Y A G   
Sbjct: 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNI----LLTGYVAHGKGS 571

Query: 329 AAQNLENKMIAMKEN 343
            A  L N+M+    N
Sbjct: 572 MAVELFNRMVESGVN 586

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 62.8 bits (154), Expect = 4e-13
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           P VVTYN +I+ + K G +E+  + F +MK RG+KPN  TY  L+    K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 63/289 (21%), Positives = 113/289 (39%), Gaps = 23/289 (7%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK------ 62
              +A  LF  M  DG       +  ++ A    G            + +  C       
Sbjct: 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS-------ARAGQQLHCCVLKTGVV 256

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D +    LI   +K    +    +   M     E + V +N+++ GY      EE    
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCL 312

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +  M +SG    D FT + MI  +     +E  ++ +      G   DI     L   Y 
Sbjct: 313 YYEMRDSG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  +  R+V D M ++     ++++N +I  +G  G   K  E F++M   G+ PN +
Sbjct: 372 KWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQV-ENSDVILDTPFFNCIISAYGQAG 290
           T+ +++SA   +GL  +   I + + EN  +      + C+I   G+ G
Sbjct: 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 59.0 bits (144), Expect = 9e-12
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 27 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 77
          P V  Y  L+  Y + G ++EA    N+MK     KP+VYTYSILI    K
Sbjct: 1  PDVVTYNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 52.4 bits (127), Expect = 2e-09
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
           VTYNT+IDGY K  K EE    F+ M +  G  P+++T + +I     
Sbjct: 4   VTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 51.3 bits (124), Expect = 4e-09
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112
           PDV TY+ LI    K  + +   K+  EM   GI+ +  TY+ +IDG  K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.1 bits (121), Expect = 1e-08
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           +N +I  Y + G VE+  +LF  MK+R   P+  T++ +I   
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 66/307 (21%), Positives = 126/307 (41%), Gaps = 48/307 (15%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI--LA 89
           +TA++S Y ++GL D+A  T   M+   +  PD  T + ++ +C      D+  K+  LA
Sbjct: 357 WTAMISGYEKNGLPDKALETYALME-QDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415

Query: 90  E----MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE----------SGGC--- 132
           E    +SY+      V  N +I+ Y K K  ++    F  + E          +G     
Sbjct: 416 ERKGLISYV------VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNN 469

Query: 133 ----------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
                            P+  TL + +SA    G +   ++ +      G+  D    N 
Sbjct: 470 RCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L   Y R G  +   +  +  +K      VV++NI++  +   G      E F +M   G
Sbjct: 530 LLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584

Query: 237 MKPNSITYCSLVSAYSKAGLIMK-VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           + P+ +T+ SL+ A S++G++ + ++      E   +  +   + C++   G+AG + + 
Sbjct: 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644

Query: 296 GELFLTM 302
                 M
Sbjct: 645 YNFINKM 651

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 77/377 (20%), Positives = 142/377 (37%), Gaps = 47/377 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           L  C +  +A  LFE++ +          Y ALV A      +    +    ++S S  +
Sbjct: 97  LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-SGFE 155

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD Y  + ++    K        ++  EM     E +  ++ TII G   A  + E  + 
Sbjct: 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFAL 211

Query: 123 FSAMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           F  M E G    P  F +  M+ A    G+    ++ +      GV  D      L   Y
Sbjct: 212 FREMWEDGSDAEPRTFVV--MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G  +  R V D M ++    T V +N ++  +   G+ E+    + +M+  G+  + 
Sbjct: 270 SKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325

Query: 242 ITYCSLVSAYSKAGLIMKVD----SILRQVENSDVILDTPF------------------- 278
            T+  ++  +S+  L+         ++R     D++ +T                     
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385

Query: 279 --------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
                   +N +I+ YG  G   K  E+F  M      P+++TF  ++ A    G++E  
Sbjct: 386 MPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445

Query: 331 QNLENKMIAMKENSGKK 347
             +     +M EN   K
Sbjct: 446 WEI---FQSMSENHRIK 459

Length = 697

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 44.8 bits (107), Expect = 7e-07
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           VTYN +I+   KAG +E+  E FK+MK RG++P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 8/186 (4%)

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N+M+S +   G +  +  WY  F  M  + D+ + N+L   Y +AG +D+   +   M  
Sbjct: 125 NAMLSMFVRFGEL--VHAWY-VFGKMPER-DLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P V T+  V+ T G    + +  E    +   G + +     +L++ Y K G ++ 
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +  ++   D I     +N +IS Y + G+  +  ELF TM+E    PD +T  ++I 
Sbjct: 241 ARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296

Query: 320 AYNALG 325
           A   LG
Sbjct: 297 ACELLG 302

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 41.6 bits (99), Expect = 1e-05
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           PD+ T N++I  Y   G +E+  K +NE    G+K ++ T +IL     +
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 41.2 bits (98), Expect = 2e-05
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
           D+ T N L   Y + G  ++   + + M+KR   P V TY+I+I+   K
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           + TYN ++    KAG  +      ++MK  G+KP
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 50/251 (19%), Positives = 101/251 (40%), Gaps = 20/251 (7%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDV--YTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M  KCK  ++A  +F  +      P  DV  +T++++    +    EA      M     
Sbjct: 433 MYSKCKCIDKALEVFHNI------PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL--T 484

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KP+  T    + +C +       ++I A +   GI       N ++D Y +  +     
Sbjct: 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           + F++         D+ + N +++ Y   G      + +N     GV  D  T   L  +
Sbjct: 545 NQFNS------HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598

Query: 181 YGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
             R+GM  +       M++++   P +  Y  V++  G+AG + +   +  KM    + P
Sbjct: 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITP 655

Query: 240 NSITYCSLVSA 250
           +   + +L++A
Sbjct: 656 DPAVWGALLNA 666

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           VTYNT+IDG  KA + EE    F  M E  G  PD+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKER-GIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           +N +I    +AG VE+  ELF  MKER   PD
Sbjct: 3   YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           VTYN++I GY KA K EE    F  M E G
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKG 30

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
           VTYN +I  + KAG +E+  E FK+MK +G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 37.3 bits (88), Expect = 3e-04
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
             P VVTYN +I+   +AG +++  E   +M+
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 35.8 bits (84), Expect = 0.001
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 23 DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56
           GLKP V  Y  L+    ++G +DEA   +++M+
Sbjct: 1  KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 97
          + TY+ L+ +  K    DL   +L EM   G++
Sbjct: 1  LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 11  EQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           EQ   +F+ M  +  +KP    Y  ++   G+ GLLDEA++ I      +  KP V  ++
Sbjct: 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR----APFKPTVNMWA 498

Query: 70  ILIKSCTKFHRFDLIEKILAEMSY 93
            L+ +C + H+   + ++ AE  Y
Sbjct: 499 ALLTAC-RIHKNLELGRLAAEKLY 521

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 34.2 bits (80), Expect = 0.004
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 7/33 (21%)

Query: 95  GIECSAVTYNTIIDGYGKAKK-------FEEME 120
           G++   VTYNT+IDG  +A +        +EME
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.96
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.96
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.95
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.92
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.9
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.89
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.89
PRK14574	822	hmsH outer membrane protein; Provisional	99.86
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.85
PRK14574	822	hmsH outer membrane protein; Provisional	99.85
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.84
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.84
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.83
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.81
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.81
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.8
KOG2076	895	consensus RNA polymerase III transcription factor	99.8
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.79
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.78
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.78
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.78
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.77
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.77
KOG1126	638	consensus DNA-binding cell division cycle control	99.77
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.75
KOG1126	638	consensus DNA-binding cell division cycle control	99.74
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.72
KOG2003	840	consensus TPR repeat-containing protein [General f	99.72
KOG2076	895	consensus RNA polymerase III transcription factor	99.71
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.71
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.7
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.67
PRK12370	553	invasion protein regulator; Provisional	99.67
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.66
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.66
PRK12370	553	invasion protein regulator; Provisional	99.65
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.65
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.65
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.63
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.63
KOG1129	478	consensus TPR repeat-containing protein [General f	99.63
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.63
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.62
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.62
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.6
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.6
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.59
KOG1129	478	consensus TPR repeat-containing protein [General f	99.58
KOG2003	840	consensus TPR repeat-containing protein [General f	99.58
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.56
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.55
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.54
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.49
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.48
PRK11189	296	lipoprotein NlpI; Provisional	99.46
PRK11189	296	lipoprotein NlpI; Provisional	99.46
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.45
PF13041	50	PPR_2: PPR repeat family	99.44
PF13041	50	PPR_2: PPR repeat family	99.43
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.43
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.4
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.38
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.38
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.38
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.37
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.36
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.35
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.35
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.34
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.33
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.31
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.29
PRK04841	903	transcriptional regulator MalT; Provisional	99.28
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.27
KOG1125	579	consensus TPR repeat-containing protein [General f	99.24
KOG1125	579	consensus TPR repeat-containing protein [General f	99.23
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.23
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.21
PLN02789	320	farnesyltranstransferase	99.2
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.19
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.18
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.17
PLN02789	320	farnesyltranstransferase	99.16
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.15
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.15
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.13
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.12
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.1
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.09
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.08
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	99.07
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.07
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.06
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.03
PRK04841	903	transcriptional regulator MalT; Provisional	99.03
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	99.02
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.01
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.0
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.99
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.99
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.98
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.96
PRK15359	144	type III secretion system chaperone protein SscB;	98.95
PRK15359	144	type III secretion system chaperone protein SscB;	98.93
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.92
PF12854	34	PPR_1: PPR repeat	98.92
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.91
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.88
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.86
PF12854	34	PPR_1: PPR repeat	98.84
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.82
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.81
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.8
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.8
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.8
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.79
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.75
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.74
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.7
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.68
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.67
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.65
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.63
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.61
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.57
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.56
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.55
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.53
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.49
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.45
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.45
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.41
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.38
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.37
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.35
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.32
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.31
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.3
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.29
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.29
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.29
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.26
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.26
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.26
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.25
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.25
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.25
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.23
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.23
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.22
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.2
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.18
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.17
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.17
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.14
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.13
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.12
KOG0553	304	consensus TPR repeat-containing protein [General f	98.1
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.1
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.09
KOG0553	304	consensus TPR repeat-containing protein [General f	98.09
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.08
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.08
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.07
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.04
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.98
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.98
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.97
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.96
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.95
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.94
PRK10803	263	tol-pal system protein YbgF; Provisional	97.93
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.91
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.9
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.89
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.87
PF12688	120	TPR_5: Tetratrico peptide repeat	97.87
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.84
PRK15331	165	chaperone protein SicA; Provisional	97.84
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.81
PF12688	120	TPR_5: Tetratrico peptide repeat	97.8
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.8
PF13371	73	TPR_9: Tetratricopeptide repeat	97.77
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.76
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.75
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.73
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.71
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.59
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.56
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.56
PF13371	73	TPR_9: Tetratricopeptide repeat	97.54
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.53
PRK10803	263	tol-pal system protein YbgF; Provisional	97.48
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.48
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.45
PRK15331	165	chaperone protein SicA; Provisional	97.44
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.44
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.43
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.42
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.41
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.39
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.35
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.33
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.2
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.18
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.15
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.1
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.09
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.09
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.04
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.02
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.01
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.0
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.92
KOG4555	175	consensus TPR repeat-containing protein [Function	96.92
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.88
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.83
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.77
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.76
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.75
PF13512	142	TPR_18: Tetratricopeptide repeat	96.75
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.75
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.74
PF13428	44	TPR_14: Tetratricopeptide repeat	96.73
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.7
PRK11906	458	transcriptional regulator; Provisional	96.68
PRK11906	458	transcriptional regulator; Provisional	96.68
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.67
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.67
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.64
KOG4555	175	consensus TPR repeat-containing protein [Function	96.6
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.55
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.5
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.47
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.4
PF13512	142	TPR_18: Tetratricopeptide repeat	96.37
PF13428	44	TPR_14: Tetratricopeptide repeat	96.3
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.29
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.24
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.24
KOG1585	308	consensus Protein required for fusion of vesicles	96.22
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.2
KOG3941	406	consensus Intermediate in Toll signal transduction	96.17
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.15
KOG1258	577	consensus mRNA processing protein [RNA processing	96.14
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.08
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.06
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.9
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.88
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.85
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.84
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.68
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.68
PF13929	292	mRNA_stabil: mRNA stabilisation	95.62
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.61
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.48
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.44
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.41
KOG3941	406	consensus Intermediate in Toll signal transduction	95.39
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	95.34
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.34
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.33
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	95.32
PF13431	34	TPR_17: Tetratricopeptide repeat	95.28
KOG4234	271	consensus TPR repeat-containing protein [General f	95.22
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.08
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.07
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.06
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.0
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.0
PF13431	34	TPR_17: Tetratricopeptide repeat	94.99
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.97
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.93
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.76
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.76
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.74
KOG4570	418	consensus Uncharacterized conserved protein [Funct	94.7
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.67
KOG4570	418	consensus Uncharacterized conserved protein [Funct	94.36
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.31
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.27
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.25
KOG1258	577	consensus mRNA processing protein [RNA processing	94.18
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.99
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	93.94
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	93.93
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.73
KOG1585	308	consensus Protein required for fusion of vesicles	93.6
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.56
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.46
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.43
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.31
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	93.24
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	93.13
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.06
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	93.05
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	93.05
KOG4648	536	consensus Uncharacterized conserved protein, conta	92.98
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.79
PF09477	116	Type_III_YscG: Bacterial type II secretion system	92.51
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.43
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	92.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.2
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.75
PRK11619	644	lytic murein transglycosylase; Provisional	91.66
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	91.65
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	91.35
KOG4234	271	consensus TPR repeat-containing protein [General f	91.23
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.21
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	91.21
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.17
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.14
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.86
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.83
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	90.7
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.49
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.34
COG4455	273	ImpE Protein of avirulence locus involved in tempe	90.32
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.08
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	89.95
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.67
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	89.39
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.34
KOG3364	149	consensus Membrane protein involved in organellar	89.31
KOG4648	536	consensus Uncharacterized conserved protein, conta	88.92
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.87
PRK09687	280	putative lyase; Provisional	88.85
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	88.83
PRK09687	280	putative lyase; Provisional	88.5
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	88.43
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.14
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	87.78
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.66
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	87.3
COG5159	421	RPN6 26S proteasome regulatory complex component [	87.25
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	86.85
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	86.47
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	86.31
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	85.48
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	85.36
cd00280	200	TRFH Telomeric Repeat binding Factor or TTAGGG Rep	85.26
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	85.06
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	84.64
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	84.53
KOG1586	288	consensus Protein required for fusion of vesicles	84.53
PRK10941	269	hypothetical protein; Provisional	84.45
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	84.35
KOG4507	886	consensus Uncharacterized conserved protein, conta	84.23
PF14689	62	SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do	84.18
COG1747	711	Uncharacterized N-terminal domain of the transcrip	83.8
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	82.97
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	82.51
KOG2471	696	consensus TPR repeat-containing protein [General f	82.42
cd00280	200	TRFH Telomeric Repeat binding Factor or TTAGGG Rep	81.77
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	81.3
cd08819	88	CARD_MDA5_2 Caspase activation and recruitment dom	80.4
PRK10941	269	hypothetical protein; Provisional	80.2

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=7.7e-61  Score=429.86  Aligned_cols=350  Identities=20%  Similarity=0.337  Sum_probs=339.5

Q ss_pred             CcccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCC
Q 018743            1 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR   80 (351)
Q Consensus         1 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (351)
                      |.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|+.++.+|++.|+
T Consensus       444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaLI~gy~k~G~  522 (1060)
T PLN03218        444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN-AGVEANVHTFGALIDGCARAGQ  522 (1060)
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCcC
Confidence            356889999999999999999999999999999999999999999999999999998 8999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 018743           81 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWY  159 (351)
Q Consensus        81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  159 (351)
                      +++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|... .|+.||..+|+.++.+|++.|++++|.++|
T Consensus       523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999763 468999999999999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 018743          160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP  239 (351)
Q Consensus       160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  239 (351)
                      +.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus       603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p  682 (1060)
T PLN03218        603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL  682 (1060)
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ  319 (351)
Q Consensus       240 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  319 (351)
                      +..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.
T Consensus       683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~  762 (1060)
T PLN03218        683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV  762 (1060)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcccCCCCccCC
Q 018743          320 AYNALGMTEAAQNLENKMIAMKENSGKKLIQC  351 (351)
Q Consensus       320 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~c  351 (351)
                      +|.+.|+.++|.+++++|.+.+..|+...|+|
T Consensus       763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns  794 (1060)
T PLN03218        763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRC  794 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            99999999999999999999999888766543

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.1e-58  Score=416.10  Aligned_cols=345  Identities=23%  Similarity=0.336  Sum_probs=328.2

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCCC--------------------------------CCHHHHHHHHHHHhccCChHHHHH
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGLK--------------------------------PSVDVYTALVSAYGQSGLLDEAFS   50 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~a~~   50 (351)
                      .|++.|++++|.++|++|.+.|+.                                |+..+|+.++.+|++.|+++.|.+
T Consensus       379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~  458 (1060)
T PLN03218        379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALR  458 (1060)
T ss_pred             HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence            345667777777777777776642                                688999999999999999999999


Q ss_pred             HHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 018743           51 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG  130 (351)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  130 (351)
                      +|+.|.+ .|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+. 
T Consensus       459 lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-  536 (1060)
T PLN03218        459 VLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-  536 (1060)
T ss_pred             HHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-
Confidence            9999998 89999999999999999999999999999999999999999999999999999999999999999999776 


Q ss_pred             CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 018743          131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL--MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT  208 (351)
Q Consensus       131 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  208 (351)
                      |+.||..+|+.++.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|++++|.++|+.|.+.++.|+..+
T Consensus       537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t  616 (1060)
T PLN03218        537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV  616 (1060)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence            6999999999999999999999999999999976  67899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ  288 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (351)
                      |+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.+|.+|++
T Consensus       617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k  696 (1060)
T PLN03218        617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN  696 (1060)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCCcc
Q 018743          289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI  349 (351)
Q Consensus       289 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  349 (351)
                      .|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...+..|+...|
T Consensus       697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty  757 (1060)
T PLN03218        697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY  757 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999888876554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=9.2e-53  Score=374.61  Aligned_cols=333  Identities=16%  Similarity=0.251  Sum_probs=199.2

Q ss_pred             ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHH
Q 018743            5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI   84 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   84 (351)
                      .+.++++.+.+++..|.+.|+.||..+|+.++..|++.|+++.|.++|+.|.     .||..+|+.++.+|++.|++++|
T Consensus       134 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A  208 (697)
T PLN03081        134 IALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREA  208 (697)
T ss_pred             HhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHH
Confidence            3334444444444444444444444444444444444444444444444443     13444444444444444444444


Q ss_pred             HHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 018743           85 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL  164 (351)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  164 (351)
                      .++|++|.+.|+.|+..+|+.++.++...|..+.+.+++..+.+. |..||..+++.++.+|++.|++++|.++|++|. 
T Consensus       209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-  286 (697)
T PLN03081        209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-  286 (697)
T ss_pred             HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh-CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-
Confidence            444444444444444333333333333333333333333333222 344555556666667777777777777777664 


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 018743          165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY  244 (351)
Q Consensus       165 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  244 (351)
                         ++|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..++
T Consensus       287 ---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~  363 (697)
T PLN03081        287 ---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN  363 (697)
T ss_pred             ---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence               35666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 018743          245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL  324 (351)
Q Consensus       245 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  324 (351)
                      +.|+.+|++.|++++|.++|++|.+    ||..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.
T Consensus       364 ~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~  439 (697)
T PLN03081        364 TALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS  439 (697)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence            7777777777777777777777653    466677777777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHH-hcccCCCCccCC
Q 018743          325 GMTEAAQNLENKMIA-MKENSGKKLIQC  351 (351)
Q Consensus       325 g~~~~A~~~~~~~~~-~~~~~~~~~~~c  351 (351)
                      |+.++|.++|++|.+ .+..|+...|.|
T Consensus       440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~  467 (697)
T PLN03081        440 GLSEQGWEIFQSMSENHRIKPRAMHYAC  467 (697)
T ss_pred             CcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence            777777777777765 355555544443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.6e-52  Score=373.03  Aligned_cols=329  Identities=20%  Similarity=0.325  Sum_probs=197.7

Q ss_pred             cccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCH
Q 018743            2 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF   81 (351)
Q Consensus         2 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (351)
                      .+|++.|++++|.++|++|.    .||..+|+.++.+|++.|++++|+++|++|.+ .|..|+..+|+.++.+|++.|+.
T Consensus       166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~  240 (697)
T PLN03081        166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSA  240 (697)
T ss_pred             HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcH
Confidence            45677777777777777775    35777777777777777777777777777766 55566555555544444444444


Q ss_pred             HHHHHHHHHHHHcCCCC-------------------------------CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 018743           82 DLIEKILAEMSYLGIEC-------------------------------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESG  130 (351)
Q Consensus        82 ~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  130 (351)
                      +.+.+++..+.+.|+.|                               |..+|+.++.+|++.|++++|.++|++|.+. 
T Consensus       241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-  319 (697)
T PLN03081        241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-  319 (697)
T ss_pred             HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-
Confidence            44444444444444444                               5555555555555555555555555555433 


Q ss_pred             CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 018743          131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN  210 (351)
Q Consensus       131 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  210 (351)
                      |+.||..||+.++.+|++.|++++|.+++..|.+.|++||..+++.++.+|++.|++++|.++|+.|.+    ||..+|+
T Consensus       320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n  395 (697)
T PLN03081        320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWN  395 (697)
T ss_pred             CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHH
Confidence            355555555555555555555555555555555555555555555555555555555555555555532    4555666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh-cCCccCHHhHHHHHHHHHhc
Q 018743          211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQA  289 (351)
Q Consensus       211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~  289 (351)
                      .+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .++.|+..+|+.++.+|++.
T Consensus       396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~  475 (697)
T PLN03081        396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE  475 (697)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence            66666666666666666666666666666666666666666666666666666666653 45566666666666666666


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       290 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      |++++|.+++++|   ++.|+..+|++++.+|...|+.+.|..+++++.+.+|.
T Consensus       476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~  526 (697)
T PLN03081        476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE  526 (697)
T ss_pred             CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence            6666666665543   34566666666666666666666666666666555544

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=5.1e-52  Score=378.15  Aligned_cols=338  Identities=24%  Similarity=0.309  Sum_probs=209.8

Q ss_pred             cccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCH
Q 018743            2 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF   81 (351)
Q Consensus         2 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (351)
                      .+|++.|++++|.++|++|.    .||..+||.+|.+|++.|++++|+++|++|.+ .|+.||..||+.++.+|++.|+.
T Consensus       230 ~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~  304 (857)
T PLN03077        230 TMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLMTITSVISACELLGDE  304 (857)
T ss_pred             HHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCh
Confidence            45666777777777777665    34666777777777777777777777777766 56677777777777777777777


Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 018743           82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE  161 (351)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  161 (351)
                      +.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.     .||..+|+.++.+|++.|++++|.++|++
T Consensus       305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~  379 (857)
T PLN03077        305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYAL  379 (857)
T ss_pred             HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence            7777777777777777777777777777777666666666666662     34556666666666666666666666666


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH-------------
Q 018743          162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY-------------  228 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-------------  228 (351)
                      |.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|..|+..+|+.++.+|++.|++++|.++             
T Consensus       380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~  459 (857)
T PLN03077        380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT  459 (857)
T ss_pred             HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHH
Confidence            6666666666666666666666666666666666665555555555555555555555555554444             


Q ss_pred             ------------------HHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC------------------
Q 018743          229 ------------------FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV------------------  272 (351)
Q Consensus       229 ------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------  272 (351)
                                        |++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+                  
T Consensus       460 ~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G  538 (857)
T PLN03077        460 SIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG  538 (857)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC
Confidence                              444443 3455555554444433333333333333322222221                  


Q ss_pred             ------------ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H
Q 018743          273 ------------ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI-A  339 (351)
Q Consensus       273 ------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~  339 (351)
                                  .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +
T Consensus       539 ~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~  618 (857)
T PLN03077        539 RMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK  618 (857)
T ss_pred             CHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence                        345556666666666777777777777777777777777777777777777777777777777776 4


Q ss_pred             hcccCCCCccC
Q 018743          340 MKENSGKKLIQ  350 (351)
Q Consensus       340 ~~~~~~~~~~~  350 (351)
                      .+..|+...|.
T Consensus       619 ~gi~P~~~~y~  629 (857)
T PLN03077        619 YSITPNLKHYA  629 (857)
T ss_pred             hCCCCchHHHH
Confidence            45555544443

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.1e-50  Score=369.48  Aligned_cols=337  Identities=17%  Similarity=0.202  Sum_probs=176.9

Q ss_pred             cccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCc------------------
Q 018743            2 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP------------------   63 (351)
Q Consensus         2 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------   63 (351)
                      .+|++.|++++|+++|++|...|+.||..+|+.++.+|+..++++.+.+++..+.+ .|+.|                  
T Consensus       160 ~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~  238 (857)
T PLN03077        160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDV  238 (857)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH-cCCCcccchHhHHHHHHhcCCCH
Confidence            45677777777777777777777777666665544444443333333333333333 33333                  


Q ss_pred             -------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 018743           64 -------------DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG  130 (351)
Q Consensus        64 -------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  130 (351)
                                   |..+|+.++.+|++.|++++|.++|++|...|+.||..||+.++.+|.+.|+.+.|.+++..+.+. 
T Consensus       239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~-  317 (857)
T PLN03077        239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT-  317 (857)
T ss_pred             HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh-
Confidence                         344444444444444444444444444444444444444444444444444444444444444333 


Q ss_pred             CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 018743          131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN  210 (351)
Q Consensus       131 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  210 (351)
                      |+.||..+|+.++.+|++.|++++|.++|++|.    .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus       318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~  393 (857)
T PLN03077        318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA  393 (857)
T ss_pred             CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence            344444444444444444444444444444443    2344444445555555555555555555555445555555555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743          211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG  290 (351)
Q Consensus       211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  290 (351)
                      .++.+|++.|+++.|.++++.|.+.|+.|+..+++.|+.+|++.|++++|.++|++|.+    +|..+|+.++.+|++.|
T Consensus       394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g  469 (857)
T PLN03077        394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNN  469 (857)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCC
Confidence            55555555555555555555555555555555555555555555555555555555443    23334444444444444


Q ss_pred             CHHHHHHHHHHHHhcCCC--------------------------------------------------------------
Q 018743          291 DVEKMGELFLTMKERHCV--------------------------------------------------------------  308 (351)
Q Consensus       291 ~~~~a~~~~~~~~~~~~~--------------------------------------------------------------  308 (351)
                      +.++|.++|++|.. ++.                                                              
T Consensus       470 ~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~  548 (857)
T PLN03077        470 RCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN  548 (857)
T ss_pred             CHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence            44444444444432 123                                                              


Q ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCCcc
Q 018743          309 ---PDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI  349 (351)
Q Consensus       309 ---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  349 (351)
                         ||..+|+.++.+|.+.|+.++|.++|++|.+.+..|+...|
T Consensus       549 ~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~  592 (857)
T PLN03077        549 SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF  592 (857)
T ss_pred             hcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence               34455677777777788888888888888887777776554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=7.9e-26  Score=210.43  Aligned_cols=327  Identities=13%  Similarity=0.058  Sum_probs=194.4

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      +.+.|++++|..+++++.+.++. +...+..++..+...|++++|+++++.+.+.  .+.+...|..+..++...|++++
T Consensus       543 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~  619 (899)
T TIGR02917       543 YLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNK  619 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHH
Confidence            44566677777777766665433 5556666666666667777777766666642  24455566666666666667777


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN  163 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  163 (351)
                      |...++.+.+.. +.+...+..+..++...|++++|...++++.+..  +.+..++..+...+...|++++|.++++.+.
T Consensus       620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  696 (899)
T TIGR02917       620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ  696 (899)
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            766666666554 3455566666666666666666666666665542  4445566666666666666666666666665


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 018743          164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT  243 (351)
Q Consensus       164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  243 (351)
                      ... +.+...+..+...+...|++++|...++.+....  |+..++..++.++...|++++|.+.+..+.+.. +.+...
T Consensus       697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~  772 (899)
T TIGR02917       697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL  772 (899)
T ss_pred             hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence            544 3445555556666666666666666666665543  223444555566666666666666666665543 445555


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA  323 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  323 (351)
                      +..+...|...|++++|...|+++.+..+. ++.+++.+...+...|+ .+|+..++++.+.. +-++.++..+...+..
T Consensus       773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~  849 (899)
T TIGR02917       773 RTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVE  849 (899)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence            566666666666666666666666555433 45555555555555555 55556555555431 2233444555555555


Q ss_pred             cCCHHHHHHHHHHHHHhccc
Q 018743          324 LGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       324 ~g~~~~A~~~~~~~~~~~~~  343 (351)
                      .|++++|.+.++++++.+|.
T Consensus       850 ~g~~~~A~~~~~~a~~~~~~  869 (899)
T TIGR02917       850 KGEADRALPLLRKAVNIAPE  869 (899)
T ss_pred             cCCHHHHHHHHHHHHhhCCC
Confidence            56666666666666555554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=1.6e-25  Score=208.37  Aligned_cols=322  Identities=11%  Similarity=0.026  Sum_probs=182.0

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      |.+.|++++|..+++.+.+..+. +..+|..+..++...|++++|+..|+.+.+..  +.+...+..+...+...|++++
T Consensus       577 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~  653 (899)
T TIGR02917       577 YLGKGQLKKALAILNEAADAAPD-SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAK  653 (899)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHH
Confidence            34556666666666665554322 55556666666666666666666666655421  2334455555555666666666


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN  163 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  163 (351)
                      |...++++.+.. +.+..++..++..+...|++++|.++++.+.+..  +.+...+..+...+...|++++|.+.++.+.
T Consensus       654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~  730 (899)
T TIGR02917       654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKAL  730 (899)
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            666666655543 3345555566666666666666666666665442  3444555555556666666666666666655


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 018743          164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT  243 (351)
Q Consensus       164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  243 (351)
                      ..+  |+..++..++.++.+.|++++|...++.+.+..+ .+...+..+...+...|++++|...|+++.+.. +.+...
T Consensus       731 ~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~  806 (899)
T TIGR02917       731 KRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVV  806 (899)
T ss_pred             hhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHH
Confidence            432  3334455555566666666666666666555432 245555555566666666666666666665543 445555


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA  323 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  323 (351)
                      +..+...+...|+ .+|...++++.+..+. ++.++..+...+...|++++|.++|+++.+.+. .+..++..+..++.+
T Consensus       807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~  883 (899)
T TIGR02917       807 LNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLA  883 (899)
T ss_pred             HHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHH
Confidence            5566666666666 5566666665554433 444555555556666666666666666665432 255555566666666


Q ss_pred             cCCHHHHHHHHHHHH
Q 018743          324 LGMTEAAQNLENKMI  338 (351)
Q Consensus       324 ~g~~~~A~~~~~~~~  338 (351)
                      .|++++|.+++++|+
T Consensus       884 ~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       884 TGRKAEARKELDKLL  898 (899)
T ss_pred             cCCHHHHHHHHHHHh
Confidence            666666666666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.96  E-value=4e-25  Score=185.84  Aligned_cols=303  Identities=13%  Similarity=0.054  Sum_probs=248.0

Q ss_pred             HHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHh
Q 018743           35 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS---AVTYNTIIDGYG  111 (351)
Q Consensus        35 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~  111 (351)
                      ....+...|++++|+..|.++.+..  +.+..++..+...+...|++++|..+++.+...+..++   ..++..+...|.
T Consensus        41 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~  118 (389)
T PRK11788         41 KGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL  118 (389)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            3445678899999999999999742  44566888999999999999999999999987542221   356788899999


Q ss_pred             hcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCH
Q 018743          112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD----IQTLNILTKSYGRAGMY  187 (351)
Q Consensus       112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~  187 (351)
                      +.|++++|..+|+++.+..  +.+..++..++..+.+.|++++|.+.++.+.+.+..+.    ...+..+...+.+.|++
T Consensus       119 ~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  196 (389)
T PRK11788        119 KAGLLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL  196 (389)
T ss_pred             HCCCHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence            9999999999999998752  56677899999999999999999999999987653322    22456678888999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 018743          188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV  267 (351)
Q Consensus       188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  267 (351)
                      ++|...++++.+... .+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++
T Consensus       197 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  275 (389)
T PRK11788        197 DAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA  275 (389)
T ss_pred             HHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999987643 2566778888999999999999999999987642323567888999999999999999999999


Q ss_pred             hhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcccC
Q 018743          268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA---LGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       268 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      .+..  |+...+..++..+.+.|++++|..+++++.+.  .|+..++..++..+..   .|+.+++..++++|++....+
T Consensus       276 ~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~  351 (389)
T PRK11788        276 LEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR  351 (389)
T ss_pred             HHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence            8875  45556688999999999999999999999875  6888889888887765   568999999999999866554


Q ss_pred             CC
Q 018743          345 GK  346 (351)
Q Consensus       345 ~~  346 (351)
                      ++
T Consensus       352 ~p  353 (389)
T PRK11788        352 KP  353 (389)
T ss_pred             CC
Confidence            44

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.96  E-value=1.8e-24  Score=181.89  Aligned_cols=302  Identities=13%  Similarity=0.102  Sum_probs=252.9

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCc--cHHHHHHHHHHHHhcCCH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP--DVYTYSILIKSCTKFHRF   81 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~   81 (351)
                      +...|++++|...|+++.+.++. +..++..+...+...|++++|..+++.+.......+  ....+..+...+.+.|++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~  123 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL  123 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence            34679999999999999998654 778999999999999999999999999987322111  135678888999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC---HhHHHHHHHHHhcCCCHHHHHHH
Q 018743           82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD---IFTLNSMISAYGNSGNIEKMEKW  158 (351)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~  158 (351)
                      +.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.....+.   ...+..+...+.+.|++++|.+.
T Consensus       124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  202 (389)
T PRK11788        124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL  202 (389)
T ss_pred             HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999998764 567889999999999999999999999999876422222   12455677788999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 018743          159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK  238 (351)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  238 (351)
                      ++++.+.. +.+...+..+...+.+.|++++|.+.++++...+......+++.++.++...|++++|...++++.+.  .
T Consensus       203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~  279 (389)
T PRK11788        203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y  279 (389)
T ss_pred             HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence            99998754 44566788899999999999999999999987644433567888999999999999999999999886  4


Q ss_pred             ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHH
Q 018743          239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ---AGDVEKMGELFLTMKERHCVPDNI  312 (351)
Q Consensus       239 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~  312 (351)
                      |+...+..++..+.+.|++++|..+++++.+.  .|+...++.++..+..   .|+.+++..+++++.+.++.|++.
T Consensus       280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            66667788999999999999999999998876  4677888888877765   568999999999999888887776

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.95  E-value=1e-23  Score=185.67  Aligned_cols=331  Identities=10%  Similarity=-0.001  Sum_probs=276.5

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      +.+.|++++|..+++......+. +...+..++.+....|+++.|+..++++.+..  +.+...+..+...+...|++++
T Consensus        52 ~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~  128 (656)
T PRK15174         52 CLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYAT  128 (656)
T ss_pred             HHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHH
Confidence            45789999999999999988766 67777778888889999999999999999753  4456778888899999999999


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN  163 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  163 (351)
                      |...++++.+.. +.+...+..+...+...|++++|...++.+....  +.+...+..+ ..+...|++++|...++.+.
T Consensus       129 Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l  204 (656)
T PRK15174        129 VADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLARALL  204 (656)
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence            999999999875 5577888999999999999999999999887653  3344444444 34788999999999999987


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCc
Q 018743          164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK----MEEYFKKMKHRGMKP  239 (351)
Q Consensus       164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~  239 (351)
                      .....++......+...+...|++++|...++......+. +...+..+...+...|++++    |...+++..+.. +.
T Consensus       205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~  282 (656)
T PRK15174        205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SD  282 (656)
T ss_pred             hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CC
Confidence            7643344455566678889999999999999999887543 67788889999999999986    899999998874 55


Q ss_pred             cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHH
Q 018743          240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN-ITFATMI  318 (351)
Q Consensus       240 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~  318 (351)
                      +...+..+...+...|++++|...+++..+..+. +...+..+..++.+.|++++|...|+++.+.  .|+. ..+..+.
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a  359 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAA  359 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHH
Confidence            6788999999999999999999999999988765 6777888999999999999999999999875  4444 3344456


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          319 QAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       319 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      .++...|+.++|...|+++++..|....
T Consensus       360 ~al~~~G~~deA~~~l~~al~~~P~~~~  387 (656)
T PRK15174        360 AALLQAGKTSEAESVFEHYIQARASHLP  387 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence            7899999999999999999998887544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=3.4e-21  Score=170.29  Aligned_cols=330  Identities=12%  Similarity=-0.014  Sum_probs=206.7

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      |.+.|++++|+..|++.++.  .|++..|..+..+|.+.|++++|++.++...+..  +.+...|..+..++...|++++
T Consensus       137 ~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~e  212 (615)
T TIGR00990       137 AYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYAD  212 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHH
Confidence            55678888888888887765  4566777778888888888888888888877632  3345566666667777777666


Q ss_pred             HHHHHH--------------------------------------------------------------------------
Q 018743           84 IEKILA--------------------------------------------------------------------------   89 (351)
Q Consensus        84 a~~~~~--------------------------------------------------------------------------   89 (351)
                      |...|.                                                                          
T Consensus       213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (615)
T TIGR00990       213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN  292 (615)
T ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence            654332                                                                          


Q ss_pred             --------------------------HHHHcC--CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHH
Q 018743           90 --------------------------EMSYLG--IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS  141 (351)
Q Consensus        90 --------------------------~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  141 (351)
                                                .....+  .+.....+..+..++...|++++|+..+++.++..  +.....|..
T Consensus       293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~  370 (615)
T TIGR00990       293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIK  370 (615)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHH
Confidence                                      222211  01122334445555556666666666666666542  333445666


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 018743          142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH  221 (351)
Q Consensus       142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  221 (351)
                      +...+...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+..++.+.|+
T Consensus       371 la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~  448 (615)
T TIGR00990       371 RASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGS  448 (615)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCC
Confidence            6666666777777777777666543 344566666666777777777777777776665332 45556666666777777


Q ss_pred             HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHH------hHHHHHHHHHhcCCHHHH
Q 018743          222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP------FFNCIISAYGQAGDVEKM  295 (351)
Q Consensus       222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a  295 (351)
                      +++|+..+++..+.. +.+...+..+...+...|++++|...|++.....+..+..      .++.....+...|++++|
T Consensus       449 ~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA  527 (615)
T TIGR00990       449 IASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA  527 (615)
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence            777777777766542 4455666777777777777777777777766554321111      111122223335777777


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       296 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      .+++++..... +.+...+..+...+.+.|++++|++.|+++.+....
T Consensus       528 ~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       528 ENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELART  574 (615)
T ss_pred             HHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence            77777766542 223445677777888888888888888877766543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.92  E-value=1e-20  Score=177.73  Aligned_cols=333  Identities=12%  Similarity=0.064  Sum_probs=239.2

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHH------------HH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS------------IL   71 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~l   71 (351)
                      +...|++++|+..|++..+..+. +..++..+..++.+.|++++|+..|++..+.....+....|.            ..
T Consensus       279 ~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~  357 (1157)
T PRK11447        279 AVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ  357 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence            45679999999999999987655 889999999999999999999999999887432222222221            22


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHH---------
Q 018743           72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM---------  142 (351)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---------  142 (351)
                      ...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|+++.+..  +.+...+..+         
T Consensus       358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~  434 (1157)
T PRK11447        358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSP  434 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCH
Confidence            345678999999999999999875 5577788889999999999999999999998763  3333333322         


Q ss_pred             ---------------------------------HHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018743          143 ---------------------------------ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK  189 (351)
Q Consensus       143 ---------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  189 (351)
                                                       ...+...|++++|++.+++..+.. +.+...+..+...|.+.|++++
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~  513 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ  513 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence                                             233446788888888888887754 4456677788888999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----------------------------------
Q 018743          190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR----------------------------------  235 (351)
Q Consensus       190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------------  235 (351)
                      |...++.+.+..+. +...+..+...+...++.++|...++.+...                                  
T Consensus       514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA  592 (1157)
T PRK11447        514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA  592 (1157)
T ss_pred             HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence            99999888765332 3332222222333344444444333321100                                  


Q ss_pred             -----CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018743          236 -----GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD  310 (351)
Q Consensus       236 -----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~  310 (351)
                           ..+.+...+..+...+.+.|++++|...|+.+.+..+. +...+..++..+...|++++|++.++.+.+. -+.+
T Consensus       593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~  670 (1157)
T PRK11447        593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDS  670 (1157)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCC
Confidence                 12445556667777788888888888888888877655 6778888888888888888888888877754 1234


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          311 NITFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       311 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      ...+..+..++...|++++|.+++++++...+..
T Consensus       671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~  704 (1157)
T PRK11447        671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ  704 (1157)
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence            5566677778888888888888888888765543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.92  E-value=9.2e-21  Score=167.16  Aligned_cols=332  Identities=11%  Similarity=-0.003  Sum_probs=267.3

Q ss_pred             cccCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCH
Q 018743            4 LGKCKQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF   81 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (351)
                      +.++.+++..--+|....+..  -..+..-...++..+.+.|++++|+.+++......  +-+...+..++.+....|++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~   92 (656)
T PRK15174         15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQP   92 (656)
T ss_pred             hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCH
Confidence            445566666555555443321  11133345556778889999999999999998743  33455666777778889999


Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 018743           82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE  161 (351)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  161 (351)
                      +.|...++++.... |.+...+..+...+...|++++|...++++.+..  +.+...+..+...+...|++++|...++.
T Consensus        93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~  169 (656)
T PRK15174         93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLART  169 (656)
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence            99999999999886 5678889999999999999999999999998863  55677888999999999999999999998


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 018743          162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS  241 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  241 (351)
                      +.... +.+...+..+ ..+...|++++|...++.+......++...+..+..++...|++++|...++++.+.. +.+.
T Consensus       170 ~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~  246 (656)
T PRK15174        170 QAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGA  246 (656)
T ss_pred             HHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence            87654 2333344333 3478899999999999998776544455555666788899999999999999999875 5567


Q ss_pred             HHHHHHHHHHHhcCCHhH----HHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018743          242 ITYCSLVSAYSKAGLIMK----VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM  317 (351)
Q Consensus       242 ~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  317 (351)
                      ..+..+...+...|++++    |...++++.+..+. +...+..+...+...|++++|+..+++..+.. +.+...+..+
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L  324 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY  324 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            888899999999999986    89999999988765 78899999999999999999999999999863 3346677888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743          318 IQAYNALGMTEAAQNLENKMIAMKENSG  345 (351)
Q Consensus       318 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~  345 (351)
                      ..++.+.|++++|...+++++..+|...
T Consensus       325 a~~l~~~G~~~eA~~~l~~al~~~P~~~  352 (656)
T PRK15174        325 ARALRQVGQYTAASDEFVQLAREKGVTS  352 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence            9999999999999999999998877653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=5e-22  Score=162.31  Aligned_cols=331  Identities=15%  Similarity=0.116  Sum_probs=258.4

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHH----------------
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT----------------   67 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------   67 (351)
                      +-..|+++.|+.+++.+.+..+. .++.|..+..++...|+.+.|.+.|....+.   .|+...                
T Consensus       126 ~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~Grl~  201 (966)
T KOG4626|consen  126 LKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEGRLE  201 (966)
T ss_pred             HHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhcccc
Confidence            44679999999999999998666 7889999999999999999999888887764   343322                


Q ss_pred             -------------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 018743           68 -------------------YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE  128 (351)
Q Consensus        68 -------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  128 (351)
                                         |+.|...+..+|+...|++.|++..+.. |--...|..|...|...+.+++|...+.+...
T Consensus       202 ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~  280 (966)
T KOG4626|consen  202 EAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALN  280 (966)
T ss_pred             hhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence                               3333333444666677777777766654 33356777777778788888888887777766


Q ss_pred             cCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 018743          129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT  208 (351)
Q Consensus       129 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  208 (351)
                      ..  +....++..+...|...|.++-|+..|++.++.. +.-...|+.+..++-..|+..+|...+......... ....
T Consensus       281 lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hada  356 (966)
T KOG4626|consen  281 LR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADA  356 (966)
T ss_pred             cC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHH
Confidence            52  4445567777777888888888888888887743 233567899999999999999999999888776433 4667


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ  288 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (351)
                      .+.+...+...|.+++|..+|....+-. +--....+.|...|-+.|++++|...+++..+..+. -...|+.+...|..
T Consensus       357 m~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke  434 (966)
T KOG4626|consen  357 MNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKE  434 (966)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHH
Confidence            7888899999999999999998887752 334567888999999999999999999998876544 46688899999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCC
Q 018743          289 AGDVEKMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK  347 (351)
Q Consensus       289 ~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  347 (351)
                      .|+.+.|++.+.+.+..  .|. ...++.|...|..+|+..+|+.-+++.++.+|+.++.
T Consensus       435 ~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA  492 (966)
T KOG4626|consen  435 MGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA  492 (966)
T ss_pred             hhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence            99999999999999874  444 5678899999999999999999999999999887654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.90  E-value=1.5e-19  Score=169.96  Aligned_cols=323  Identities=9%  Similarity=0.007  Sum_probs=222.3

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHH--------
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC--------   75 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--------   75 (351)
                      +.+.|++++|...|+++.+..+. +..++..+...+...|++++|++.|+++.+..  +.+...+..+...+        
T Consensus       361 ~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A  437 (1157)
T PRK11447        361 ALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKA  437 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHH
Confidence            45789999999999999988654 77888889999999999999999999998743  33344444444433        


Q ss_pred             ----------------------------------HhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHH
Q 018743           76 ----------------------------------TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES  121 (351)
Q Consensus        76 ----------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  121 (351)
                                                        ...|++++|...+++..+.. |.+...+..+...|.+.|++++|..
T Consensus       438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~  516 (1157)
T PRK11447        438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA  516 (1157)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence                                              23455555555555555443 2234444455555555555555555


Q ss_pred             HHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHHHhcCCHHHHHH
Q 018743          122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI---------QTLNILTKSYGRAGMYDKMRS  192 (351)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~  192 (351)
                      .++++.+..  +.+...+..+...+...++.++|+..++.+......++.         ..+......+...|+.++|..
T Consensus       517 ~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~  594 (1157)
T PRK11447        517 LMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA  594 (1157)
T ss_pred             HHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence            555554432  223333333333444455555555555543221111111         011233455666677777777


Q ss_pred             HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743          193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV  272 (351)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  272 (351)
                      +++.     .+++...+..+...+.+.|++++|+..|++..+.. +.+...+..++..+...|++++|.+.++.+.+..+
T Consensus       595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p  668 (1157)
T PRK11447        595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN  668 (1157)
T ss_pred             HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence            6651     23455667788899999999999999999999874 55788999999999999999999999999887654


Q ss_pred             ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743          273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC--VP---DNITFATMIQAYNALGMTEAAQNLENKMIA  339 (351)
Q Consensus       273 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  339 (351)
                      . +...+..+..++...|++++|.++++++.....  +|   +...+..+...+...|++++|+..|++++.
T Consensus       669 ~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        669 D-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             C-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4 566777888899999999999999999987532  22   224566678889999999999999999975

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=3.5e-19  Score=157.61  Aligned_cols=308  Identities=10%  Similarity=-0.006  Sum_probs=249.2

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743           31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY  110 (351)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (351)
                      .+......+.+.|++++|+..|++..+.   .|+...|..+..++.+.|++++|+..++...+.. +.+...+..+..+|
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~  204 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY  204 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            4566788899999999999999999874   6788889999999999999999999999999876 55778999999999


Q ss_pred             hhcCChHHHHHHHHHHHhcCCCC----------------------------CCHhHHHHHHH------------------
Q 018743          111 GKAKKFEEMESSFSAMVESGGCH----------------------------PDIFTLNSMIS------------------  144 (351)
Q Consensus       111 ~~~~~~~~a~~~~~~~~~~~~~~----------------------------~~~~~~~~l~~------------------  144 (351)
                      ...|++++|+..|..+....+..                            ++...+..+..                  
T Consensus       205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (615)
T TIGR00990       205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN  284 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence            99999999987665543221111                            00000000000                  


Q ss_pred             ------------HH------hcCCCHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 018743          145 ------------AY------GNSGNIEKMEKWYNEFNLMG-V-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP  204 (351)
Q Consensus       145 ------------~~------~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  204 (351)
                                  ..      ...+++++|.+.|+.....+ . +.....+..+...+...|++++|...++...+..+. 
T Consensus       285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-  363 (615)
T TIGR00990       285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-  363 (615)
T ss_pred             ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Confidence                        00      12357889999999988754 2 234567888888899999999999999999886432 


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743          205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS  284 (351)
Q Consensus       205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  284 (351)
                      ....|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+..
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~  441 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGV  441 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHH
Confidence            46678888899999999999999999998874 556788999999999999999999999999988765 6778888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       285 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      ++.+.|++++|+..|++..+. .+.+...+..+..++...|++++|++.|++.+...|....
T Consensus       442 ~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~  502 (615)
T TIGR00990       442 TQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP  502 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence            999999999999999999875 3445788999999999999999999999999998876443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.90  E-value=7.3e-19  Score=158.39  Aligned_cols=335  Identities=10%  Similarity=-0.033  Sum_probs=207.6

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      +.+.|++++|..+|+...+..+. +...+..++.++...|++++|+..++++.+..  +.+.. +..+..++...|+.++
T Consensus        59 ~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~  134 (765)
T PRK10049         59 YRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWD  134 (765)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHH
Confidence            45667777777777777665433 56666677777777777777777777776532  33444 6666667777777777


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHH----------------------------------------
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF----------------------------------------  123 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----------------------------------------  123 (351)
                      |+..++++.+.. |.+...+..+..++...+..++|++.+                                        
T Consensus       135 Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad  213 (765)
T PRK10049        135 ELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD  213 (765)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence            777777777664 334555555555555444444333333                                        


Q ss_pred             ------HHHHhcCCCCCCHh-HHH----HHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018743          124 ------SAMVESGGCHPDIF-TLN----SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS  192 (351)
Q Consensus       124 ------~~~~~~~~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  192 (351)
                            +.+.+.....|+.. .+.    ..+..+...|++++|+..|+.+.+.+.+........+..+|...|++++|..
T Consensus       214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~  293 (765)
T PRK10049        214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQS  293 (765)
T ss_pred             HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence                  33332211111111 110    1122334557777788777777765422111122234667777788888888


Q ss_pred             HHHHHHHcCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------Ccc---HHHHHHHHHHHHhcC
Q 018743          193 VMDFMQKRFFFP---TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM-----------KPN---SITYCSLVSAYSKAG  255 (351)
Q Consensus       193 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g  255 (351)
                      .|+.+.......   .......+..++...|++++|..+++.+.....           .|+   ...+..+...+...|
T Consensus       294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g  373 (765)
T PRK10049        294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN  373 (765)
T ss_pred             HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence            887776543211   123445555667777888888888877776420           122   123455666777778


Q ss_pred             CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 018743          256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN  335 (351)
Q Consensus       256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  335 (351)
                      +.++|+..++++....+. +...+..++..+...|++++|++.+++..... +.+...+..++..+...|++++|..+++
T Consensus       374 ~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~  451 (765)
T PRK10049        374 DLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTD  451 (765)
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            888888888887776555 57777777888888888888888888877652 2235555666667778888888888888


Q ss_pred             HHHHhcccCC
Q 018743          336 KMIAMKENSG  345 (351)
Q Consensus       336 ~~~~~~~~~~  345 (351)
                      ++++..|+.+
T Consensus       452 ~ll~~~Pd~~  461 (765)
T PRK10049        452 DVVAREPQDP  461 (765)
T ss_pred             HHHHhCCCCH
Confidence            8887776654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-20  Score=154.64  Aligned_cols=303  Identities=14%  Similarity=0.148  Sum_probs=176.5

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hHHHHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA-VTYNTI  106 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l  106 (351)
                      -.++|..+...+-..|++++|+..++.+.+..  +..+..|..+..++...|+.+.|.+.|.+..+.+  |+. ...+.+
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~l  190 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDL  190 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcch
Confidence            46788889999999999999999999999742  3357789999999999999999999998888764  332 233334


Q ss_pred             HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcC
Q 018743          107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD-IQTLNILTKSYGRAG  185 (351)
Q Consensus       107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  185 (351)
                      .......|+.++|...+.+.++..  +--..+|+.|...+-..|+...|+..|++..+.+  |+ ...|..|...|...+
T Consensus       191 gnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~  266 (966)
T KOG4626|consen  191 GNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEAR  266 (966)
T ss_pred             hHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHh
Confidence            444555666666666666665542  2233456666666666666666666666665432  22 334555555555555


Q ss_pred             CHHHHHHHHHH----------------------------------HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743          186 MYDKMRSVMDF----------------------------------MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK  231 (351)
Q Consensus       186 ~~~~a~~~~~~----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  231 (351)
                      .++.|...+.+                                  ..+..+. =+..|+.+..++-..|+..+|.+.|.+
T Consensus       267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnk  345 (966)
T KOG4626|consen  267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNK  345 (966)
T ss_pred             cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHH
Confidence            55555555444                                  4433211 234455555555555555555555555


Q ss_pred             HHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-
Q 018743          232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-  310 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-  310 (351)
                      .+... +......+.|...+...|.+++|..+|....+..+. -...++.|...|-+.|++++|+..|++.+.  +.|+ 
T Consensus       346 aL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f  421 (966)
T KOG4626|consen  346 ALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF  421 (966)
T ss_pred             HHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH
Confidence            54432 223344455555555555555555555554443322 233445555555555555555555555554  3444 


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          311 NITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       311 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      ...|+.+...|...|+.+.|...+.+++..+|.
T Consensus       422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt  454 (966)
T KOG4626|consen  422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT  454 (966)
T ss_pred             HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence            345555555555555555555555555555443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.89  E-value=1.9e-18  Score=155.68  Aligned_cols=335  Identities=10%  Similarity=-0.020  Sum_probs=252.6

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD   82 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (351)
                      +....|+.++|+++++...... +.+...+..+..++...|++++|.++|++..+..  +.+...+..+...+...|+++
T Consensus        24 ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~  100 (765)
T PRK10049         24 IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYD  100 (765)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHH
Confidence            4567899999999999998743 3367779999999999999999999999988743  445667788888899999999


Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH--
Q 018743           83 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN--  160 (351)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--  160 (351)
                      +|...++++.+.. |.+.. +..+..++...|+.++|+..++++.+..  +.+...+..+..++...+..++|++.++  
T Consensus       101 eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~  176 (765)
T PRK10049        101 EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDA  176 (765)
T ss_pred             HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence            9999999998875 55666 8889999999999999999999998873  4555566666666666666665554443  


Q ss_pred             --------------------------------------------HHHhc-CCCCCHH-HHH----HHHHHHHhcCCHHHH
Q 018743          161 --------------------------------------------EFNLM-GVKADIQ-TLN----ILTKSYGRAGMYDKM  190 (351)
Q Consensus       161 --------------------------------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a  190 (351)
                                                                  .+.+. ...|+.. .+.    ..+..+...|++++|
T Consensus       177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA  256 (765)
T PRK10049        177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV  256 (765)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence                                                        33321 1112111 111    112345677899999


Q ss_pred             HHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 018743          191 RSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP---NSITYCSLVSAYSKAGLIMKVDSILRQ  266 (351)
Q Consensus       191 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~  266 (351)
                      ...|+.+.+.+.. |+.. ...+..++...|++++|...|+++.+.....   .......+..++...|++++|..+++.
T Consensus       257 ~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~  335 (765)
T PRK10049        257 ISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH  335 (765)
T ss_pred             HHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            9999998887532 3322 2225778899999999999999987653111   134566677788999999999999999


Q ss_pred             hhhcCC-----------ccC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 018743          267 VENSDV-----------ILD---TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN  332 (351)
Q Consensus       267 ~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  332 (351)
                      +.+..+           .|+   ...+..+...+...|+.++|+++++++... .+.+...+..+...+...|++++|++
T Consensus       336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~  414 (765)
T PRK10049        336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAEN  414 (765)
T ss_pred             HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            886542           122   234566778889999999999999999876 35567788899999999999999999


Q ss_pred             HHHHHHHhcccCCC
Q 018743          333 LENKMIAMKENSGK  346 (351)
Q Consensus       333 ~~~~~~~~~~~~~~  346 (351)
                      .+++++...|+...
T Consensus       415 ~l~~al~l~Pd~~~  428 (765)
T PRK10049        415 ELKKAEVLEPRNIN  428 (765)
T ss_pred             HHHHHHhhCCCChH
Confidence            99999998877543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.86  E-value=5.8e-17  Score=144.01  Aligned_cols=333  Identities=12%  Similarity=0.031  Sum_probs=198.7

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      ..+.|+++.|+..|++..+..+.-.+.++ .++..+...|+.++|+..+++...  ..+........+...+...|++++
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~  120 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQ  120 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHH
Confidence            46789999999999999887544112344 788888888999999999998873  112333334444567888899999


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN  163 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  163 (351)
                      |.++|+++.+.. |.+...+..++..+...++.++|++.++++...   .|+...+..++..+...++..+|++.++++.
T Consensus       121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll  196 (822)
T PRK14574        121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAV  196 (822)
T ss_pred             HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            999999998876 456777778888888899999999999988765   4555555445455545666666888888887


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHH------------------------------------------------HH
Q 018743          164 LMGVKADIQTLNILTKSYGRAGMYDKMRSV------------------------------------------------MD  195 (351)
Q Consensus       164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~------------------------------------------------~~  195 (351)
                      +.. +.+...+..+..++.+.|-...|.++                                                ++
T Consensus       197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~  275 (822)
T PRK14574        197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ  275 (822)
T ss_pred             HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence            754 33444444444444433333222222                                                22


Q ss_pred             HHHHc-CCCCCH-H----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743          196 FMQKR-FFFPTV-V----TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN  269 (351)
Q Consensus       196 ~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  269 (351)
                      .+... +..|.. .    ...-.+.++...+++.++++.|+.+...+.+....+-..+..+|...+++++|+.+++.+..
T Consensus       276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~  355 (822)
T PRK14574        276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY  355 (822)
T ss_pred             HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence            22211 011211 1    11123345556666666666666666555443444556666666666666666666666544


Q ss_pred             cCC-----ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------CCCH---HHHHHHHHHHHHcCCHHHH
Q 018743          270 SDV-----ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC-----------VPDN---ITFATMIQAYNALGMTEAA  330 (351)
Q Consensus       270 ~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~g~~~~A  330 (351)
                      ...     .++......|..++...+++++|..+++++.+...           .||+   ..+..++..+...|+..+|
T Consensus       356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A  435 (822)
T PRK14574        356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA  435 (822)
T ss_pred             ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence            321     11222234556666666666666666666654210           1221   1223344555566666666


Q ss_pred             HHHHHHHHHhcccC
Q 018743          331 QNLENKMIAMKENS  344 (351)
Q Consensus       331 ~~~~~~~~~~~~~~  344 (351)
                      .+.++++....|.+
T Consensus       436 e~~le~l~~~aP~n  449 (822)
T PRK14574        436 QKKLEDLSSTAPAN  449 (822)
T ss_pred             HHHHHHHHHhCCCC
Confidence            66666665555544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.85  E-value=3.1e-16  Score=142.27  Aligned_cols=329  Identities=12%  Similarity=0.067  Sum_probs=245.6

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhcc-CCCCccHHHHHHHHHHHHhcCC---H
Q 018743            6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV-SDCKPDVYTYSILIKSCTKFHR---F   81 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~---~   81 (351)
                      ..+...++...++.|.+..+. +......+.....+.|+.++|.++|+..... ....++......++..+.+.+.   .
T Consensus       354 ~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  432 (987)
T PRK09782        354 ATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP  432 (987)
T ss_pred             ccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence            346677777777777776433 6777777777888899999999999988762 2123334445566666666654   2


Q ss_pred             HHHHHH----------------------HHHHHHc-C-CCC--CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC
Q 018743           82 DLIEKI----------------------LAEMSYL-G-IEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD  135 (351)
Q Consensus        82 ~~a~~~----------------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  135 (351)
                      ..+..+                      ++..... + .++  +...|..+..++.. ++.++|...+.+....   .|+
T Consensus       433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd  508 (987)
T PRK09782        433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPD  508 (987)
T ss_pred             HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCc
Confidence            222222                      1111111 1 134  67788888888876 8888999988888765   455


Q ss_pred             HhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 018743          136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET  215 (351)
Q Consensus       136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  215 (351)
                      ......+...+...|++++|...|+++...  +|+...+..+...+.+.|+.++|...++...+..+. ....+..+...
T Consensus       509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~  585 (987)
T PRK09782        509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQ  585 (987)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHH
Confidence            544444555567899999999999987653  445555667778889999999999999998876422 33333344444


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHH
Q 018743          216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM  295 (351)
Q Consensus       216 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  295 (351)
                      ....|++++|...+++..+.  .|+...+..+...+.+.|++++|...+++.....+. +...++.+..++...|++++|
T Consensus       586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence            55669999999999999886  457888999999999999999999999999988776 778889999999999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       296 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      +..+++..+.. +-+...+..+..++...|++++|...++++++..|....
T Consensus       663 i~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~  712 (987)
T PRK09782        663 REMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL  712 (987)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence            99999998862 345778889999999999999999999999998886543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.85  E-value=1.8e-16  Score=140.99  Aligned_cols=335  Identities=12%  Similarity=0.066  Sum_probs=231.4

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      |...|++++|+++|+++.+..+. ++..+..++..+...++.++|++.++++.+.   .|+...+..++..+...++..+
T Consensus       112 y~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~  187 (822)
T PRK14574        112 YRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYD  187 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHH
Confidence            45668888888888888887666 6777777778888888888888888888763   4555555444444444566656


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHH-----------------------------------------
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS-----------------------------------------  122 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-----------------------------------------  122 (351)
                      |++.++++.+.. |.+...+..+..++.+.|-...|.++                                         
T Consensus       188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~  266 (822)
T PRK14574        188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI  266 (822)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            888888888775 44566665555555554443333332                                         


Q ss_pred             -------HHHHHhcCCCCCCH-hHH----HHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018743          123 -------FSAMVESGGCHPDI-FTL----NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM  190 (351)
Q Consensus       123 -------~~~~~~~~~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  190 (351)
                             ++.+...-+..|.. ..|    .-.+-++...|+..++++.|+.+...+.+....+-..+..+|...+++++|
T Consensus       267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA  346 (822)
T PRK14574        267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA  346 (822)
T ss_pred             HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence                   23332221111221 111    123455667788888888888888877665666778888888888888888


Q ss_pred             HHHHHHHHHcC-----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------Ccc--H-HHHHHHHHHH
Q 018743          191 RSVMDFMQKRF-----FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM-----------KPN--S-ITYCSLVSAY  251 (351)
Q Consensus       191 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~--~-~~~~~l~~~~  251 (351)
                      ..+++.+....     ..++......|..++...+++++|..+++.+.+...           .||  - ..+..++..+
T Consensus       347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~  426 (822)
T PRK14574        347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL  426 (822)
T ss_pred             HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence            88888876543     122334356778888888888888888888876311           122  1 2334556677


Q ss_pred             HhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 018743          252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ  331 (351)
Q Consensus       252 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  331 (351)
                      ...|+..+|++.++.+....+. |......+...+...|.+.+|.+.++..... -+-+..+....+.++...|++++|.
T Consensus       427 ~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~  504 (822)
T PRK14574        427 VALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQME  504 (822)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHH
Confidence            7888888888888888877666 8888888888888888888888888766654 2334556667778888888889888


Q ss_pred             HHHHHHHHhcccCC
Q 018743          332 NLENKMIAMKENSG  345 (351)
Q Consensus       332 ~~~~~~~~~~~~~~  345 (351)
                      .+.+.+++..|+..
T Consensus       505 ~~~~~l~~~~Pe~~  518 (822)
T PRK14574        505 LLTDDVISRSPEDI  518 (822)
T ss_pred             HHHHHHHhhCCCch
Confidence            88888888777755

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.84  E-value=1.7e-16  Score=132.47  Aligned_cols=286  Identities=10%  Similarity=0.028  Sum_probs=224.2

Q ss_pred             ccCChHHHHHHHHHhhccCCCCccHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHhhcCChH
Q 018743           41 QSGLLDEAFSTINDMKSVSDCKPDVYT-YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN--TIIDGYGKAKKFE  117 (351)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~  117 (351)
                      ..|+++.|.+.+....+.   .+++.. |.....+..+.|+++.+..++.++.+.  .|+.....  .....+...|+++
T Consensus        96 ~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~  170 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH  170 (398)
T ss_pred             hCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence            369999999888876652   222333 333344558999999999999999876  45544333  3467888999999


Q ss_pred             HHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHH
Q 018743          118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI-------QTLNILTKSYGRAGMYDKM  190 (351)
Q Consensus       118 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a  190 (351)
                      .|...++++.+..  |.+......+...|.+.|++++|.+++..+.+.+..++.       ..|..++.......+.+..
T Consensus       171 ~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l  248 (398)
T PRK10747        171 AARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL  248 (398)
T ss_pred             HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            9999999998874  667778899999999999999999999999987654322       1233334444445556666


Q ss_pred             HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743          191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS  270 (351)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  270 (351)
                      .++++.+.+. .+.++.....+...+...|+.++|.+++++..+.  +|+....  ++.+....++.+++.+..+...+.
T Consensus       249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~  323 (398)
T PRK10747        249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ  323 (398)
T ss_pred             HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence            6677666443 2347888889999999999999999999999884  5565322  233334569999999999999988


Q ss_pred             CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743          271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK  341 (351)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  341 (351)
                      .+. |+..+..+.+.+.+.+++++|.+.|+.+.+.  .|+...+..+..++.+.|+.++|..++++.+..-
T Consensus       324 ~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        324 HGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            776 7888999999999999999999999999985  7899999999999999999999999999987754

>TIGR00540 hemY_coli hemY protein

Probab=99.84  E-value=1.2e-16  Score=134.07  Aligned_cols=293  Identities=10%  Similarity=-0.002  Sum_probs=217.9

Q ss_pred             hccCChHHHHHHHHHhhccCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHH
Q 018743           40 GQSGLLDEAFSTINDMKSVSDCKPDV-YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE  118 (351)
Q Consensus        40 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  118 (351)
                      ...|+++.|.+.+.+..+.   .|+. ..+-....+..+.|+.+.+.+++.+..+....+...........+...|+++.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence            4579999999999887763   4543 33445567788899999999999998776422222344446788889999999


Q ss_pred             HHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHH
Q 018743          119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY---GRAGMYDKMRSVMD  195 (351)
Q Consensus       119 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~  195 (351)
                      |...++.+.+..  |.+..+...+...+...|++++|.+.+..+.+.+..+.......-..++   ...+..+.+...+.
T Consensus       172 Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~  249 (409)
T TIGR00540       172 ARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL  249 (409)
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            999999998874  6677788899999999999999999999999887443332211111221   23333333344555


Q ss_pred             HHHHcCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743          196 FMQKRFF---FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT---YCSLVSAYSKAGLIMKVDSILRQVEN  269 (351)
Q Consensus       196 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~  269 (351)
                      .+....+   +.++..+..+...+...|+.++|.+.+++..+..  |+...   ...........++.+.+.+.++...+
T Consensus       250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk  327 (409)
T TIGR00540       250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK  327 (409)
T ss_pred             HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence            5544322   1378888899999999999999999999999873  33331   11111222345788889999998887


Q ss_pred             cCCccCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743          270 SDVILDT--PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       270 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  340 (351)
                      ..+. |+  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+..
T Consensus       328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7655 56  6788999999999999999999996554445789998999999999999999999999997554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.83  E-value=5.3e-16  Score=140.76  Aligned_cols=328  Identities=10%  Similarity=0.003  Sum_probs=252.5

Q ss_pred             cccCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCC---hHHHHHH----------------------HHHhh
Q 018743            4 LGKCKQPEQASLLFEVMLSD--GLKPSVDVYTALVSAYGQSGL---LDEAFST----------------------INDMK   56 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~~~   56 (351)
                      ..+.|+.++|.++|+.....  +..++....+.++..|.+.+.   ..++..+                      .+...
T Consensus       386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (987)
T PRK09782        386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV  465 (987)
T ss_pred             HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence            45789999999999998773  233455566688888888766   3333322                      12221


Q ss_pred             ccCCC-Cc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Q 018743           57 SVSDC-KP--DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH  133 (351)
Q Consensus        57 ~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  133 (351)
                      ...+. ++  +...|..+..++.. ++.++|...+.+.....  |+......+...+...|++++|...|+++...   +
T Consensus       466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~  539 (987)
T PRK09782        466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH---D  539 (987)
T ss_pred             HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---C
Confidence            11112 34  56778888877776 88889999888887663  55544445566667899999999999998554   4


Q ss_pred             CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 018743          134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI  213 (351)
Q Consensus       134 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  213 (351)
                      |+...+..+..++.+.|++++|..+++...+.. +.+...+..+.......|++++|...+++..+..  |+...+..+.
T Consensus       540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA  616 (987)
T PRK09782        540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARA  616 (987)
T ss_pred             CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence            555566777888899999999999999998765 3344444444455556699999999999998764  5678899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHH
Q 018743          214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE  293 (351)
Q Consensus       214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  293 (351)
                      .++.+.|++++|+..+++..... +.+...+..+..++...|++++|+..+++..+..+. +...+..+..++...|+++
T Consensus       617 ~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~  694 (987)
T PRK09782        617 TIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMA  694 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999999885 557788889999999999999999999999988776 7889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          294 KMGELFLTMKERHCVPDN-ITFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       294 ~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      +|+..|++..+.  .|+. .+.........+..+++.|.+-+++....++..
T Consensus       695 eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~  744 (987)
T PRK09782        695 ATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS  744 (987)
T ss_pred             HHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence            999999999975  4543 455566677777888888888888877766543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.81  E-value=3.5e-19  Score=142.33  Aligned_cols=263  Identities=14%  Similarity=0.075  Sum_probs=112.6

Q ss_pred             HHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhc
Q 018743           34 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA  113 (351)
Q Consensus        34 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  113 (351)
                      .+...+.+.|++++|+++++........+.|...|..+...+...++++.|...++++...+ +-++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence            56888889999999999996544311113345556666677778899999999999998876 3366777777777 688


Q ss_pred             CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018743          114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKMRS  192 (351)
Q Consensus       114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~  192 (351)
                      +++++|.++++...+.   .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+
T Consensus        91 ~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999887665   3456667788888999999999999999876533 34677788888999999999999999


Q ss_pred             HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743          193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV  272 (351)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  272 (351)
                      .+++..+..+. +......++..+...|+.+++..+++...+.. +.|+..+..+..++...|+.++|...+++..+..+
T Consensus       168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p  245 (280)
T PF13429_consen  168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP  245 (280)
T ss_dssp             HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence            99999887443 57778888999999999999988888887764 55667788899999999999999999999888766


Q ss_pred             ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       273 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      . |+.....+..++...|+.++|.++..++..
T Consensus       246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             T--HHHHHHHHHHHT-----------------
T ss_pred             c-cccccccccccccccccccccccccccccc
Confidence            5 888889999999999999999999887653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.81  E-value=6e-19  Score=140.97  Aligned_cols=262  Identities=13%  Similarity=0.113  Sum_probs=113.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc
Q 018743           70 ILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN  148 (351)
Q Consensus        70 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  148 (351)
                      .+...+.+.|++++|+++++...... .+.+...|..+.......++++.|.+.++++...+  +.+...+..++.. ..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~   89 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cc
Confidence            45777889999999999997654443 24456666677777888999999999999998764  3355567777777 78


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHH
Q 018743          149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEE  227 (351)
Q Consensus       149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~  227 (351)
                      .+++++|.+++....+.  .++...+...+..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+
T Consensus        90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             ccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999998876553  3566677788888999999999999999977543 34577888888999999999999999


Q ss_pred             HHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 018743          228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC  307 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  307 (351)
                      .+++..+.. |.|......++..+...|+.+++..+++...+.. ..++..+..+..++...|+.++|...|++..+. .
T Consensus       168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~  244 (280)
T PF13429_consen  168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N  244 (280)
T ss_dssp             HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-c
Confidence            999999874 4467888899999999999999999998887765 336677889999999999999999999999875 3


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743          308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA  339 (351)
Q Consensus       308 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  339 (351)
                      +.|+.....+..++...|+.++|.++.+++..
T Consensus       245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             TT-HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            45788888999999999999999999888764

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=2.7e-15  Score=118.23  Aligned_cols=333  Identities=17%  Similarity=0.168  Sum_probs=159.9

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH--
Q 018743            6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL--   83 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--   83 (351)
                      +.-..+.|..++++......+.+..+||.+|.+-.-...    .+++.+|.. ..+.||..|+|+++++..+.|+++.  
T Consensus       219 K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMis-qkm~Pnl~TfNalL~c~akfg~F~~ar  293 (625)
T KOG4422|consen  219 KFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMIS-QKMTPNLFTFNALLSCAAKFGKFEDAR  293 (625)
T ss_pred             HHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHH-hhcCCchHhHHHHHHHHHHhcchHHHH
Confidence            333444444444444444344444444444443222111    344444444 3445555555555555555554432  


Q ss_pred             --HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHH-HHHHHHHHHhcC-C--C----CCCHhHHHHHHHHHhcCCCHH
Q 018743           84 --IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFSAMVESG-G--C----HPDIFTLNSMISAYGNSGNIE  153 (351)
Q Consensus        84 --a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~-~--~----~~~~~~~~~l~~~~~~~~~~~  153 (351)
                        |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++.++...- |  +    +.|...|...+..|.+..|.+
T Consensus       294 ~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~  373 (625)
T KOG4422|consen  294 KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLE  373 (625)
T ss_pred             HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHH
Confidence              33444455555555555555555555444444322 222222222110 0  1    112223334444444555554


Q ss_pred             HHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 018743          154 KMEKWYNEFNLMG----VKAD---IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME  226 (351)
Q Consensus       154 ~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  226 (351)
                      -|.++..-+....    +.|+   ..-|..+....+.....+.-...|+.|..+-.-|+..+...++++....++++-.-
T Consensus       374 LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ip  453 (625)
T KOG4422|consen  374 LAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIP  453 (625)
T ss_pred             HHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHH
Confidence            4444443332211    1121   11233444444555555555555555555555556666666666666666666666


Q ss_pred             HHHHHHHHcCCCccHHHHHHHHHHHHhcC-CH--------hH-----HHHHHHHh-----hhcCCccCHHhHHHHHHHHH
Q 018743          227 EYFKKMKHRGMKPNSITYCSLVSAYSKAG-LI--------MK-----VDSILRQV-----ENSDVILDTPFFNCIISAYG  287 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~-----a~~~~~~~-----~~~~~~~~~~~~~~l~~~~~  287 (351)
                      ++|.+++..|..-+......++..+++.. ..        ..     |..+++..     +...........+..+-.+.
T Consensus       454 Riw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~  533 (625)
T KOG4422|consen  454 RIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLL  533 (625)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHH
Confidence            66666666554333333333333333322 00        00     11111110     11122334556777777888


Q ss_pred             hcCCHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          288 QAGDVEKMGELFLTMKERHC-V---PDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       288 ~~g~~~~a~~~~~~~~~~~~-~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      +.|..++|.+++..+.+.+- .   |......-++..-.+.+.+..|...++-|...+..
T Consensus       534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~  593 (625)
T KOG4422|consen  534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP  593 (625)
T ss_pred             HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence            88888888888888854432 2   33333345556666777888888888877655443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.80  E-value=2.6e-15  Score=128.38  Aligned_cols=326  Identities=13%  Similarity=0.079  Sum_probs=256.3

Q ss_pred             ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHH
Q 018743            5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI   84 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   84 (351)
                      ..+|++++|..++.++.+..+. +...|..|...|-+.|+.++++..+-..-..  .+.|...|..+.....+.|+++.|
T Consensus       150 farg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA  226 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQA  226 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHH
Confidence            3459999999999999998766 8899999999999999999999888666543  356778899999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCH-h----HHHHHHHHHhcCCCHHHHHHHH
Q 018743           85 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI-F----TLNSMISAYGNSGNIEKMEKWY  159 (351)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~  159 (351)
                      .-.|.+.++.. |++...+-.-...|-+.|+...|...|.++.+..  +|.. .    .-..+++.+...++-+.|.+.+
T Consensus       227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l  303 (895)
T KOG2076|consen  227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFITHNERERAAKAL  303 (895)
T ss_pred             HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999987 6677777777889999999999999999998874  3322 2    2223466777788889999999


Q ss_pred             HHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------------------CHHhHHH
Q 018743          160 NEFNLMG-VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP---------------------------TVVTYNI  211 (351)
Q Consensus       160 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~  211 (351)
                      +.....+ -..+...++.++..+.+...++.+.............+                           +...+ .
T Consensus       304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r  382 (895)
T KOG2076|consen  304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R  382 (895)
T ss_pred             HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence            8877622 23556678899999999999999998887776522212                           22221 1


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc
Q 018743          212 VIETFGKAGHIEKMEEYFKKMKHRGMKP--NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA  289 (351)
Q Consensus       212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  289 (351)
                      ++-++......+....+...+......|  +...|..+..++...|.+.+|..+|..+......-+...|-.+.++|...
T Consensus       383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l  462 (895)
T KOG2076|consen  383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL  462 (895)
T ss_pred             HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence            2233444444445555555555555333  56788999999999999999999999999887766788999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 018743          290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI  338 (351)
Q Consensus       290 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  338 (351)
                      |.+++|.+.|+..... -+.+...-..|...+.+.|+.++|.+.++.+.
T Consensus       463 ~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  463 GEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             hhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            9999999999999975 23345556677788999999999999999876

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.79  E-value=5.3e-15  Score=123.60  Aligned_cols=285  Identities=9%  Similarity=0.012  Sum_probs=222.8

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHhccCChHHHHHHHHHhhccCCCCccHHHHH--HHHHHHHhcCCHH
Q 018743            6 KCKQPEQASLLFEVMLSDGLKPSVDVYTAL-VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS--ILIKSCTKFHRFD   82 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~   82 (351)
                      -.|++++|.+.+....+...  ++..+..+ ..+..+.|+++.|.+.+.++.+.   .|+.....  .....+...|+++
T Consensus        96 ~eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~  170 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENH  170 (398)
T ss_pred             hCCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHH
Confidence            36999999988887766532  23333333 45558999999999999999873   56654333  3356788999999


Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCH------hHHHHHHHHHhcCCCHHHHH
Q 018743           83 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI------FTLNSMISAYGNSGNIEKME  156 (351)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~  156 (351)
                      .|...++++.+.. |-+......+...|.+.|++++|.+++..+.+.....+..      .+|..++.......+.+...
T Consensus       171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~  249 (398)
T PRK10747        171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK  249 (398)
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            9999999999887 6678889999999999999999999999998775332221      12334444444556667777


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743          157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG  236 (351)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  236 (351)
                      ++++.+.+. .+.++.....+...+...|+.++|.++++...+.  .|+....  ++.+....++++++.+..+...+..
T Consensus       250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~  324 (398)
T PRK10747        250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH  324 (398)
T ss_pred             HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence            777776443 3567888899999999999999999999998875  4455322  3444456699999999999998874


Q ss_pred             CCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                       +-|...+..+...+.+.+++++|.+.|+...+.  .|+...+..+...+.+.|+.++|.+++++...
T Consensus       325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             557778889999999999999999999999976  47788888999999999999999999998764

>TIGR00540 hemY_coli hemY protein

Probab=99.78  E-value=9.9e-15  Score=122.63  Aligned_cols=292  Identities=11%  Similarity=0.009  Sum_probs=214.3

Q ss_pred             ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccH--HHHHHHHHHHHhcCCHH
Q 018743            5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV--YTYSILIKSCTKFHRFD   82 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~   82 (351)
                      ...|+++.|.+.+....+..+. ....+-....+..+.|+++.|.+.+.+..+.   .|+.  .........+...|+++
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~  170 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELH  170 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHH
Confidence            3579999999999998876433 2344455577888899999999999998763   3443  23444577788999999


Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHH-HHHHH---hcCCCHHHHHHH
Q 018743           83 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS-MISAY---GNSGNIEKMEKW  158 (351)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~---~~~~~~~~a~~~  158 (351)
                      .|...++.+.+.. |-+..++..+...+...|++++|.+.+..+.+.+ . ++...+.. -..++   ...+..++..+.
T Consensus       171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~~  247 (409)
T TIGR00540       171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-L-FDDEEFADLEQKAEIGLLDEAMADEGIDG  247 (409)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            9999999999986 5577888999999999999999999999998774 2 23332211 11111   222233333334


Q ss_pred             HHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          159 YNEFNLMG---VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY-NIVIETFGKAGHIEKMEEYFKKMKH  234 (351)
Q Consensus       159 ~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~  234 (351)
                      +..+....   .+.+...+..+...+...|+.++|.+++++..+..+......+ ..........++.+.+.+.++...+
T Consensus       248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk  327 (409)
T TIGR00540       248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK  327 (409)
T ss_pred             HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence            44444322   1247888899999999999999999999999886443221111 1222223445788899999988887


Q ss_pred             cCCCccH--HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          235 RGMKPNS--ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       235 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      .. +-|+  .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus       328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            62 4455  667789999999999999999999655544567888888999999999999999999998653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.78  E-value=3.1e-14  Score=111.29  Aligned_cols=295  Identities=12%  Similarity=0.090  Sum_probs=235.8

Q ss_pred             ccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHH
Q 018743           41 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME  120 (351)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  120 (351)
                      ..|+|.+|..+..+-.+ .+-. ....|..-..+..+.||.+.+-.++.+..+..-.++...+.+..+.....|+++.|.
T Consensus        96 ~eG~~~qAEkl~~rnae-~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~  173 (400)
T COG3071          96 FEGDFQQAEKLLRRNAE-HGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR  173 (400)
T ss_pred             hcCcHHHHHHHHHHhhh-cCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence            36999999999998776 4323 344566777788899999999999999988744667777788888999999999999


Q ss_pred             HHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 018743          121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ-------TLNILTKSYGRAGMYDKMRSV  193 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~  193 (351)
                      .-++++.+..  +.++........+|.+.|++..+..++..+.+.+.-.+..       ++..+++-....+..+.-...
T Consensus       174 ~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~  251 (400)
T COG3071         174 ENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW  251 (400)
T ss_pred             HHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            9999998874  6677788999999999999999999999999988665543       455666655555555555555


Q ss_pred             HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743          194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI  273 (351)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  273 (351)
                      ++..... .+.++..-..++.-+.+.|+.++|.++..+..+.+..|+   ...+ -.+.+.++.+.-++..+...+..+.
T Consensus       252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~  326 (400)
T COG3071         252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQHPE  326 (400)
T ss_pred             HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhCCC
Confidence            5555443 344666677888899999999999999999999876666   2222 2355778888888888877665444


Q ss_pred             cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCC
Q 018743          274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK  347 (351)
Q Consensus       274 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  347 (351)
                       ++..+..|...|.+.+.|.+|.+.|+...+.  .|+..+|..+..++.+.|+..+|..+.++.+..-..|+.+
T Consensus       327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~~  397 (400)
T COG3071         327 -DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNLP  397 (400)
T ss_pred             -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCc
Confidence             6688999999999999999999999988874  7899999999999999999999999999998766555543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=1.1e-14  Score=114.75  Aligned_cols=306  Identities=13%  Similarity=0.155  Sum_probs=232.0

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII  107 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  107 (351)
                      +..++..+|.++|+--..++|.+++++... ...+.+..+||.++.+-.-..    ..+++.+|....+.||..|+|+++
T Consensus       206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL  280 (625)
T KOG4422|consen  206 TDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL  280 (625)
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence            788999999999999999999999999887 455889999999998754332    278999999999999999999999


Q ss_pred             HHHhhcCChHHH----HHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHH-HHHHHHHHHh----cCC----CCCHHHH
Q 018743          108 DGYGKAKKFEEM----ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNEFNL----MGV----KADIQTL  174 (351)
Q Consensus       108 ~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~  174 (351)
                      .+..+.|+++.|    .+++.+|.+. |+.|+..+|..++..+.+.++..+ +..++.++..    ..+    +.+...|
T Consensus       281 ~c~akfg~F~~ar~aalqil~EmKei-GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF  359 (625)
T KOG4422|consen  281 SCAAKFGKFEDARKAALQILGEMKEI-GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF  359 (625)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHh-CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence            999999988754    5667778666 699999999999999999988755 4444444432    222    2345567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 018743          175 NILTKSYGRAGMYDKMRSVMDFMQKRF----FFPTV---VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL  247 (351)
Q Consensus       175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  247 (351)
                      ..-+..|.+..+.+.|.++...+....    +.|+.   .-|..+..+.++....+.-...|+.|+..-+-|+..+...+
T Consensus       360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~  439 (625)
T KOG4422|consen  360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL  439 (625)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence            778888889999999998877665421    22332   33566777888889999999999999988888999999999


Q ss_pred             HHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC-CH-------------HHHHHHH-------HHHHhcC
Q 018743          248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG-DV-------------EKMGELF-------LTMKERH  306 (351)
Q Consensus       248 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~-------------~~a~~~~-------~~~~~~~  306 (351)
                      +++....|.++-.-+++..+...|...+...-..++..+++.. ..             +-|..++       .++.+. 
T Consensus       440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~-  518 (625)
T KOG4422|consen  440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ-  518 (625)
T ss_pred             HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc-
Confidence            9999999999999999988887775545555444555454433 10             0111111       223333 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743          307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK  341 (351)
Q Consensus       307 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  341 (351)
                       .......+..+..+.+.|+.++|.+++.-..+.+
T Consensus       519 -~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~  552 (625)
T KOG4422|consen  519 -DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH  552 (625)
T ss_pred             -cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence             3455667777888999999999999999886544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.77  E-value=1.1e-14  Score=110.63  Aligned_cols=300  Identities=14%  Similarity=0.056  Sum_probs=225.3

Q ss_pred             cCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHhhcCChHH
Q 018743           42 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS---AVTYNTIIDGYGKAKKFEE  118 (351)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~  118 (351)
                      +++.++|.++|-.|.+.  .+.+..+--+|.+.|.+.|..+.|+++.+.+.++.--+.   ......|..-|...|-++.
T Consensus        48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            46788999999999863  244556677888889999999999999998887521111   2344567788899999999


Q ss_pred             HHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 018743          119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD----IQTLNILTKSYGRAGMYDKMRSVM  194 (351)
Q Consensus       119 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~  194 (351)
                      |..+|..+.+.+  .--..+...|+..|-...+|++|++.-+++.+.+-.+.    ...|..+...+....+.+.|..++
T Consensus       126 AE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l  203 (389)
T COG2956         126 AEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL  203 (389)
T ss_pred             HHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            999999997754  23345678889999999999999999998887764443    246788888888889999999999


Q ss_pred             HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc
Q 018743          195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL  274 (351)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  274 (351)
                      .+..+.+.. ++..--.+.+.....|+++.|++.++...+.+...-+.+...|..+|...|+.++....+.++.+....+
T Consensus       204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            998876544 4444445678888999999999999999988655567788899999999999999999999988765443


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcccCCCCccCC
Q 018743          275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA---LGMTEAAQNLENKMIAMKENSGKKLIQC  351 (351)
Q Consensus       275 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~c  351 (351)
                        ..-..+...-....-.+.|...+.+-...  .|+...+..++..-..   .|...+...++++|+..... ..+.|+|
T Consensus       283 --~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~-~~~~YRC  357 (389)
T COG2956         283 --DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR-RKPRYRC  357 (389)
T ss_pred             --cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh-hcCCcee
Confidence              34445555555555566777666665554  7899999988887553   35577778888888775544 3344554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.77  E-value=2.4e-14  Score=108.77  Aligned_cols=295  Identities=13%  Similarity=0.127  Sum_probs=224.3

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc--HHHHHHHHHHHHhcCCHHH
Q 018743            6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD--VYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~   83 (351)
                      -..+.++|.++|-+|.+..+. +.++--+|...|.+.|..++|+.+...+.+..+..-+  ......|.+-|...|-++.
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            356789999999999987655 7778888999999999999999999999883322222  2234556677889999999


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCH---hHHHHHHHHHhcCCCHHHHHHHHH
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI---FTLNSMISAYGNSGNIEKMEKWYN  160 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~  160 (351)
                      |+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.++-+...   ..|.-+...+....+.+.|..++.
T Consensus       126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            999999998765 4467788889999999999999999999887765433332   236667777778889999999999


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 018743          161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN  240 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  240 (351)
                      +..+.+ +..+..--.+.+.....|++++|.+.++.+.+.++.--..+...+..+|...|++++....+..+.+...  .
T Consensus       205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g  281 (389)
T COG2956         205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G  281 (389)
T ss_pred             HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence            988765 4455555667888999999999999999999986655567788889999999999999999999888643  3


Q ss_pred             HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCC
Q 018743          241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ---AGDVEKMGELFLTMKERHC  307 (351)
Q Consensus       241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~  307 (351)
                      ...-..+...-....-.+.|...+.+-.+.  .|+...+..++..-..   .|...+-..+++.|....+
T Consensus       282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l  349 (389)
T COG2956         282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL  349 (389)
T ss_pred             ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence            333444444444445566666666555444  5788888888886554   3456777777888875543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=5.9e-16  Score=128.16  Aligned_cols=288  Identities=14%  Similarity=0.065  Sum_probs=229.1

Q ss_pred             CChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHhhcCChHHHH
Q 018743           43 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI--ECSAVTYNTIIDGYGKAKKFEEME  120 (351)
Q Consensus        43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~  120 (351)
                      -+.++|+..|..+...  +.-+..+...+..+|...+++++|.++|+.+.+...  ..+..+|.+.+-.+-+    +-++
T Consensus       333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L  406 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL  406 (638)
T ss_pred             HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence            3567899999986542  233345667788899999999999999999987631  1256778777655432    1223


Q ss_pred             HHH-HHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          121 SSF-SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK  199 (351)
Q Consensus       121 ~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  199 (351)
                      ..+ +.+...  -+..+.+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+....
T Consensus       407 s~Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~  483 (638)
T KOG1126|consen  407 SYLAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG  483 (638)
T ss_pred             HHHHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence            322 333343  25567899999999999999999999999998754 33678888888888999999999999998876


Q ss_pred             cCCCCCHHhHHH---HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCH
Q 018743          200 RFFFPTVVTYNI---VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT  276 (351)
Q Consensus       200 ~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  276 (351)
                      .    |+..|++   +.-.|.+.++++.|.-.|++..+-+ +-+.+....+...+-+.|+.++|+.+++++...++. |+
T Consensus       484 ~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~  557 (638)
T KOG1126|consen  484 V----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP  557 (638)
T ss_pred             C----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence            5    5555554   5678899999999999999999875 557778888889999999999999999999988877 66


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       277 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      ..--.-+..+...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|.-|.+++|....
T Consensus       558 l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  558 LCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             hhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            55556677888899999999999999985 4445667888889999999999999999999999888765

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.75  E-value=8.1e-15  Score=126.36  Aligned_cols=128  Identities=12%  Similarity=0.099  Sum_probs=104.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743          220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF  299 (351)
Q Consensus       220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  299 (351)
                      +..++|+++|.+.++.. |-|...-+.+.-.++..|++.+|..+|.++.+.... ...+|-.+.++|...|++..|+++|
T Consensus       626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmY  703 (1018)
T KOG2002|consen  626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMY  703 (1018)
T ss_pred             HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHH
Confidence            34667888888888764 667777888888889999999999999999887653 5667888999999999999999999


Q ss_pred             HHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCCcc
Q 018743          300 LTMKER-HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI  349 (351)
Q Consensus       300 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  349 (351)
                      +...+. .-..+......|.+++.+.|.+.+|.+.+..++...|..+...+
T Consensus       704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~F  754 (1018)
T KOG2002|consen  704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKF  754 (1018)
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHh
Confidence            987654 33456778889999999999999999999999888887765443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=4.7e-15  Score=122.95  Aligned_cols=286  Identities=12%  Similarity=0.022  Sum_probs=227.8

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCC-ccHHHHHHHHHHHHhcCCHHHHHHH
Q 018743            9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK-PDVYTYSILIKSCTKFHRFDLIEKI   87 (351)
Q Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~   87 (351)
                      +.++|...|+.+.++- ..+..+...+..+|.+.+++++|..+|+.+.+..... -+...|.+.+-.+-+   .-+---+
T Consensus       334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence            5678999999966653 3366888889999999999999999999998753322 256778877654322   1122223


Q ss_pred             HHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 018743           88 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV  167 (351)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  167 (351)
                      -+.+.... +-.+.+|-++..+|.-+++.+.|++.|++.++.+  +....+|+.+..-+....++|.|...|+..+.   
T Consensus       410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---  483 (638)
T KOG1126|consen  410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALG---  483 (638)
T ss_pred             HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhc---
Confidence            33444443 5678999999999999999999999999998863  44778899999999999999999999998764   


Q ss_pred             CCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 018743          168 KADIQTL---NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY  244 (351)
Q Consensus       168 ~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  244 (351)
                       .++..|   --+.-.|.+.++++.|+-.|+...+-++. +.+....+...+-+.|+.++|+.++++..... +.|+..-
T Consensus       484 -~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~  560 (638)
T KOG1126|consen  484 -VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCK  560 (638)
T ss_pred             -CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhH
Confidence             444444   45677899999999999999999887655 66677778888899999999999999998875 4466665


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018743          245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV  308 (351)
Q Consensus       245 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  308 (351)
                      -.-+..+...+++++|+..++++++.-+. +...|..+...|.+.|+.+.|+.-|.-+.+...+
T Consensus       561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  561 YHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            56667778889999999999999988655 6778888999999999999999999988876433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=2.2e-13  Score=108.60  Aligned_cols=259  Identities=10%  Similarity=0.086  Sum_probs=202.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHhcCCCH
Q 018743           74 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFTLNSMISAYGNSGNI  152 (351)
Q Consensus        74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  152 (351)
                      ++......+++..-.+.....|.+-+...-+....+.....++++|+.+|+++.+...... |..+|+.++-.-..... 
T Consensus       236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk-  314 (559)
T KOG1155|consen  236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK-  314 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH-
Confidence            3444556667777777777777766666666666677788899999999999987653332 34566666543222111 


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743          153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM  232 (351)
Q Consensus       153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  232 (351)
                         +.++.+-...--+.-+.|...+.+.|.-.++.++|...|++..+.++. ....|+.+..-|....+...|++.++..
T Consensus       315 ---Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  315 ---LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             ---HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence               111111111101334567788888999999999999999999987654 5677888899999999999999999999


Q ss_pred             HHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 018743          233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI  312 (351)
Q Consensus       233 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  312 (351)
                      ++-+ |-|-..|-.|.++|.-.+.+.-|+-.|++.....+. |...|.+|..+|.+.++.++|++.|.+....|- .+..
T Consensus       391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~  467 (559)
T KOG1155|consen  391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGS  467 (559)
T ss_pred             HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchH
Confidence            9875 668899999999999999999999999999988766 899999999999999999999999999998653 3668


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743          313 TFATMIQAYNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  340 (351)
                      .+..|...|.+.++..+|...+++-++.
T Consensus       468 ~l~~LakLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  468 ALVRLAKLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            8999999999999999999999888763

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.72  E-value=1.2e-13  Score=110.08  Aligned_cols=333  Identities=11%  Similarity=0.079  Sum_probs=199.9

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhc
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGLKPS----VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF   78 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   78 (351)
                      ++.+..++.+|+..|+..+..-+..+    ....+.+...+.+.|+++.|+..|+...+.   .|+..+-..|+-++...
T Consensus       246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i  322 (840)
T KOG2003|consen  246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAI  322 (840)
T ss_pred             eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheec
Confidence            56778888999999888776522222    345666666788899999999999988763   67776655555566667


Q ss_pred             CCHHHHHHHHHHHHHcCCCCC------------HhHHHHHHH--------------------------------------
Q 018743           79 HRFDLIEKILAEMSYLGIECS------------AVTYNTIID--------------------------------------  108 (351)
Q Consensus        79 ~~~~~a~~~~~~~~~~~~~~~------------~~~~~~l~~--------------------------------------  108 (351)
                      |+.++..+.|.+|......+|            ....+.-+.                                      
T Consensus       323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~  402 (840)
T KOG2003|consen  323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC  402 (840)
T ss_pred             CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc
Confidence            888888888888865422221            111111110                                      


Q ss_pred             -------------------------HHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH--------------------
Q 018743          109 -------------------------GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI--------------------  143 (351)
Q Consensus       109 -------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~--------------------  143 (351)
                                               -+.+.|+++.|++++.-+.++..-..+...-+.-+                    
T Consensus       403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a  482 (840)
T KOG2003|consen  403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA  482 (840)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence                                     24455666666666665543321111111000000                    


Q ss_pred             ---------------HHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 018743          144 ---------------SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT  208 (351)
Q Consensus       144 ---------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  208 (351)
                                     +.....|++++|.+.|++....+..-....|++ .-.+-..|+.++|+..|-++..- +..+...
T Consensus       483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~ev  560 (840)
T KOG2003|consen  483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEV  560 (840)
T ss_pred             hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHH
Confidence                           001124566666666666654432222222322 22344556666666666554332 1124444


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ  288 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (351)
                      .-.+...|....++..|++++.+.... ++.|+..+..|...|-+.|+-..|.+.+-+--+.-+ -+..+..-|...|..
T Consensus       561 l~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp-~nie~iewl~ayyid  638 (840)
T KOG2003|consen  561 LVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP-CNIETIEWLAAYYID  638 (840)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC-cchHHHHHHHHHHHh
Confidence            445555666666666676666665443 455677777777777777777777776554443322 266677777777777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhcccC
Q 018743          289 AGDVEKMGELFLTMKERHCVPDNITFATMIQA-YNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       289 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      ..-+++++.+|++..-  +.|+..-|..++.. +.+.|++++|..+++..-+.-|+.
T Consensus       639 tqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped  693 (840)
T KOG2003|consen  639 TQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED  693 (840)
T ss_pred             hHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence            7777888888887654  57888888877755 446788888888888887766553

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.71  E-value=2.8e-13  Score=116.23  Aligned_cols=313  Identities=11%  Similarity=0.105  Sum_probs=241.0

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 018743           30 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG  109 (351)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  109 (351)
                      ...-.....+.-.|++++|.+++.++.+..  +.+...|.+|...|-..|+.+++...+-.+.... |.|...|..+...
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladl  216 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADL  216 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence            333344444555599999999999999753  5677889999999999999999998887776665 6678999999999


Q ss_pred             HhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcC
Q 018743          110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ----TLNILTKSYGRAG  185 (351)
Q Consensus       110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~  185 (351)
                      ..+.|.++.|.-.|.+.++..  +++....-.-+..|-+.|+...|...|.++.....+.|..    .....+..+...+
T Consensus       217 s~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~  294 (895)
T KOG2076|consen  217 SEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN  294 (895)
T ss_pred             HHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999874  6666666667788999999999999999998765323322    2234466677788


Q ss_pred             CHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------C
Q 018743          186 MYDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG---------------------------M  237 (351)
Q Consensus       186 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~  237 (351)
                      +-+.|.+.++..... +-..+...++.++..+.+...++.+......+....                           +
T Consensus       295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~  374 (895)
T KOG2076|consen  295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL  374 (895)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence            889999888876552 223355678889999999999999999888877621                           1


Q ss_pred             CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC--CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018743          238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD--VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA  315 (351)
Q Consensus       238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  315 (351)
                      +++... ..+.-++......+....+.....+..  +.-+...|.-+..++...|++.+|+.+|..+......-+...|.
T Consensus       375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~  453 (895)
T KOG2076|consen  375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY  453 (895)
T ss_pred             Cccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence            222222 233344455555555555555555554  44467789999999999999999999999999875555677999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcccCCCCc
Q 018743          316 TMIQAYNALGMTEAAQNLENKMIAMKENSGKKL  348 (351)
Q Consensus       316 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  348 (351)
                      .+.++|...|.+++|.+.|++++...|......
T Consensus       454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R  486 (895)
T KOG2076|consen  454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDAR  486 (895)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence            999999999999999999999999998876543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.71  E-value=1.1e-12  Score=102.79  Aligned_cols=293  Identities=12%  Similarity=0.098  Sum_probs=235.8

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 018743            6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE   85 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   85 (351)
                      -.|+|.+|.++..+-.+.+.. ....|..-+.+--+.|+.+.+-.++.+..+..| .++...+-+..+.....|+.+.|.
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA~  173 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAAR  173 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhHH
Confidence            369999999999998888766 456666677888889999999999999988422 455666777778889999999999


Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCH-------hHHHHHHHHHhcCCCHHHHHHH
Q 018743           86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI-------FTLNSMISAYGNSGNIEKMEKW  158 (351)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~  158 (351)
                      .-++++.+.+ +.++........+|.+.|++.+...++.++.+.+ .-.+.       .+|..+++-....+..+.-...
T Consensus       174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~-~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~  251 (400)
T COG3071         174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG-LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW  251 (400)
T ss_pred             HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc-CCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            9999999887 6678888999999999999999999999997764 43332       3577777777777777777777


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 018743          159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK  238 (351)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  238 (351)
                      |+..... .+.++..-..++.-+.++|+.++|.++.++..+++..|..    ...-.+.+-++.+.-.+..+.-.+.. +
T Consensus       252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~  325 (400)
T COG3071         252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-P  325 (400)
T ss_pred             HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-C
Confidence            8776543 3556777788899999999999999999999888766552    22234567778887777777766542 5


Q ss_pred             ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018743          239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD  310 (351)
Q Consensus       239 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~  310 (351)
                      .++..+..|...|.+.+.+.+|...|+...+.  .|+...|+.+.+++.+.|+..+|.+..++....-.+|+
T Consensus       326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         326 EDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence            56688999999999999999999999977765  57899999999999999999999999998774433443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=3.4e-13  Score=107.47  Aligned_cols=290  Identities=10%  Similarity=0.046  Sum_probs=214.9

Q ss_pred             HhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHhHHHHHHHHHhhcCCh
Q 018743           39 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE--CSAVTYNTIIDGYGKAKKF  116 (351)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~  116 (351)
                      +-...+.+++++-.+.... .|++-+...-+....+.....|++.|+.+|+++.+..+-  -|..+|..++-.  +..+-
T Consensus       237 ~~el~q~~e~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s  313 (559)
T KOG1155|consen  237 YQELHQHEEALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS  313 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence            3344456667766666666 555555544455555566788999999999999887411  256777776643  32221


Q ss_pred             HHHHHHH-HHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018743          117 EEMESSF-SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD  195 (351)
Q Consensus       117 ~~a~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  195 (351)
                        .+..+ +...+.+..+  +.|...+.+.|+-.++.++|..+|++..+.+ +.....|+.+..-|....+...|..-++
T Consensus       314 --kLs~LA~~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR  388 (559)
T KOG1155|consen  314 --KLSYLAQNVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR  388 (559)
T ss_pred             --HHHHHHHHHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence              12222 2222222233  3567888888999999999999999998876 5566778888899999999999999999


Q ss_pred             HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccC
Q 018743          196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD  275 (351)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  275 (351)
                      ...+-.+. |-..|-.+.++|...+.+.-|+-.|++..... |.|+..|..|..+|.+.++.++|++.|.+....+-. +
T Consensus       389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e  465 (559)
T KOG1155|consen  389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-E  465 (559)
T ss_pred             HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-c
Confidence            99887554 88899999999999999999999999998874 668899999999999999999999999998887644 6


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743          276 TPFFNCIISAYGQAGDVEKMGELFLTMKER----HCVPD--NITFATMIQAYNALGMTEAAQNLENKMIA  339 (351)
Q Consensus       276 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  339 (351)
                      ...+..|...|-+.++..+|...|+..++.    |...+  .....-|..-+.+.+++++|.........
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            788999999999999999999999887652    32222  12222355667778888887766555543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.4e-12  Score=104.74  Aligned_cols=326  Identities=12%  Similarity=0.053  Sum_probs=188.6

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCC
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGLKPS-VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHR   80 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~   80 (351)
                      -+.+.|++++|++.|.+.++.  .|+ +..|.....+|...|+|+++.+--....+.   .|+ +..+..-.+++-..|+
T Consensus       124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl---~P~Y~KAl~RRA~A~E~lg~  198 (606)
T KOG0547|consen  124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL---NPDYVKALLRRASAHEQLGK  198 (606)
T ss_pred             hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---CcHHHHHHHHHHHHHHhhcc
Confidence            367889999999999999986  556 788999999999999999998887777763   454 3345555555656666


Q ss_pred             HHHHH----------------------HHHHHH--------HH-cC--CCCCHhHHHHHHHHH-----------------
Q 018743           81 FDLIE----------------------KILAEM--------SY-LG--IECSAVTYNTIIDGY-----------------  110 (351)
Q Consensus        81 ~~~a~----------------------~~~~~~--------~~-~~--~~~~~~~~~~l~~~~-----------------  110 (351)
                      +++|+                      ++++..        .+ .+  +-|+.....+....+                 
T Consensus       199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa  278 (606)
T KOG0547|consen  199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA  278 (606)
T ss_pred             HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence            55432                      222211        01 11  122222222222211                 


Q ss_pred             ----------------------------------------------------------hhcCChHHHHHHHHHHHhcCCC
Q 018743          111 ----------------------------------------------------------GKAKKFEEMESSFSAMVESGGC  132 (351)
Q Consensus       111 ----------------------------------------------------------~~~~~~~~a~~~~~~~~~~~~~  132 (351)
                                                                                .-.|+...|.+-|+..+...  
T Consensus       279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~--  356 (606)
T KOG0547|consen  279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD--  356 (606)
T ss_pred             hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--
Confidence                                                                      11233333333344433331  


Q ss_pred             CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 018743          133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV  212 (351)
Q Consensus       133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  212 (351)
                      +.+...|-.+..+|....+.++..+.|+...+.+ +.++.+|..-...+.-.++++.|..-|++.....+. +...|-.+
T Consensus       357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl  434 (606)
T KOG0547|consen  357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQL  434 (606)
T ss_pred             cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHH
Confidence            1112224445555566666666666666655544 334455555555555566666666666666554322 34444445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-------cCHHhHHHHHHH
Q 018743          213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-------LDTPFFNCIISA  285 (351)
Q Consensus       213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~  285 (351)
                      ..+..+.++++++...|++..+. +|..+..|+.....+...++++.|.+.|+...+..+.       +.+.+...++..
T Consensus       435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~  513 (606)
T KOG0547|consen  435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL  513 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence            55555666777777777776665 4555667777777777777777777777776654332       111112222222


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743          286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       286 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  340 (351)
                      - =.+++..|..++++.++.+.. ....|..|...-.+.|+.++|+++|++...+
T Consensus       514 q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  514 Q-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             c-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            1 226777777777777764221 3446777777777888888888888776544

>PRK12370 invasion protein regulator; Provisional

Probab=99.67  E-value=6.4e-13  Score=115.97  Aligned_cols=269  Identities=11%  Similarity=0.034  Sum_probs=192.1

Q ss_pred             ccHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh---------cCChHHHHHHHHHHHh
Q 018743           63 PDVYTYSILIKSCTK-----FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK---------AKKFEEMESSFSAMVE  128 (351)
Q Consensus        63 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~  128 (351)
                      .+...|...+++...     .+++++|...|++..+.. |.+...|..+..++..         .+++++|...+++..+
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            445556666665322     234678999999998875 4456677666665542         3458899999999988


Q ss_pred             cCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 018743          129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT  208 (351)
Q Consensus       129 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  208 (351)
                      ..  +.+..++..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+..+. +...
T Consensus       333 ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~  408 (553)
T PRK12370        333 LD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA  408 (553)
T ss_pred             cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence            74  5677788888888999999999999999998865 556777888899999999999999999999887544 2333


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ  288 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (351)
                      +..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...++++....+. +....+.+...+..
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~  487 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQ  487 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhc
Confidence            33445556678999999999999877642224556777888888999999999999987765433 44556666667777


Q ss_pred             cCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743          289 AGDVEKMGELFLTMKERH-CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       289 ~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  342 (351)
                      .|  ++|...++.+.+.. -.|....+  +...+.-.|+.+.+..+ +++.+.+.
T Consensus       488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~  537 (553)
T PRK12370        488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN  537 (553)
T ss_pred             cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence            77  47777777766431 12222222  44456667777777766 77766543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.66  E-value=8.7e-12  Score=103.85  Aligned_cols=332  Identities=10%  Similarity=0.023  Sum_probs=186.8

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      |.+.+-++-|..+|...++.-+. +...|......--..|..+....+|++....  ++-....|.......-..||...
T Consensus       526 ~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~  602 (913)
T KOG0495|consen  526 CEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPA  602 (913)
T ss_pred             HHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHH
Confidence            34455555566666655554322 4445555555545555555555556555542  23333334444444555566666


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN  163 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  163 (351)
                      |..++....+.. +.+..+|..-+..-..+.+++.|..+|.+....   .|+...|..-+..-.-.++.++|++++++.+
T Consensus       603 ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~---sgTeRv~mKs~~~er~ld~~eeA~rllEe~l  678 (913)
T KOG0495|consen  603 ARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI---SGTERVWMKSANLERYLDNVEEALRLLEEAL  678 (913)
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---CCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence            666666555554 335555555555555556666666666555433   3444445544444444555566666555554


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 018743          164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT  243 (351)
Q Consensus       164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  243 (351)
                      +. ++.-...|..+.+.+-+.++.+.|...|..-.+. ++..+..|-.+...--+.|.+-.|..++++..-.+ +-+...
T Consensus       679 k~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~l  755 (913)
T KOG0495|consen  679 KS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALL  755 (913)
T ss_pred             Hh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchh
Confidence            42 1222334445555555555555555555443333 12233444444444445555555555555555443 334555


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcC-----------------------------CccCHHhHHHHHHHHHhcCCHHH
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSD-----------------------------VILDTPFFNCIISAYGQAGDVEK  294 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~~~~  294 (351)
                      |...|+.-.+.|..+.|..++.+..+.-                             ...|+.+.-.+...|....+++.
T Consensus       756 wle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~k  835 (913)
T KOG0495|consen  756 WLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEK  835 (913)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHH
Confidence            5555555555555555555444433211                             12355666677778888888999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       295 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      |.+.|.+..+.+ +.+..+|..+...+.++|.-+.-.+++++.....|..++
T Consensus       836 ar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~  886 (913)
T KOG0495|consen  836 AREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGE  886 (913)
T ss_pred             HHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Confidence            999999988763 334678888888888999888888899888887776554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.66  E-value=5.5e-12  Score=104.99  Aligned_cols=332  Identities=9%  Similarity=0.032  Sum_probs=275.2

Q ss_pred             ccCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743            5 GKCKQPEQASLLFEVMLSDGLKP--SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD   82 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (351)
                      -..|..-.+..+....+..|+.-  --.+|..-.+.|.+.+.++-|..+|....+..  +-+...|......--..|..+
T Consensus       490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~hgt~E  567 (913)
T KOG0495|consen  490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRE  567 (913)
T ss_pred             hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHH
Confidence            34577777888888888777652  24588888899999999999999999998743  556677888877777889999


Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 018743           83 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF  162 (351)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  162 (351)
                      +...+|+++...- +.....|......+-..|+...|..++..+.+..  +.+...|.+.+..-..+.+++.|..+|.+.
T Consensus       568 sl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llaka  644 (913)
T KOG0495|consen  568 SLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKA  644 (913)
T ss_pred             HHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            9999999998873 5567778888888888999999999999998874  557778999999999999999999999998


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 018743          163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI  242 (351)
Q Consensus       163 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  242 (351)
                      ..  ..|+..+|.--+...--.++.++|.+++++..+.. +.-...|-.+.+.+-+.++.+.|.+.|..-.+. ++-...
T Consensus       645 r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip  720 (913)
T KOG0495|consen  645 RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP  720 (913)
T ss_pred             hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence            76  46788888777777778899999999999988862 224567888889999999999999999876655 355567


Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------------
Q 018743          243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER-----------------  305 (351)
Q Consensus       243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------------  305 (351)
                      .|..|...--+.|.+-+|..++++..-.++. +...|-..|+.-.+.|+.+.|..+..++.+.                 
T Consensus       721 LWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~  799 (913)
T KOG0495|consen  721 LWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR  799 (913)
T ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC
Confidence            7888888888899999999999999988887 8899999999999999999998877766532                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          306 ------------HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       306 ------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                                  .+.-|+...-.+...|....++++|++.|++.++.+++.++
T Consensus       800 ~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD  852 (913)
T KOG0495|consen  800 PQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD  852 (913)
T ss_pred             cccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence                        12345666777778888899999999999999999888765

>PRK12370 invasion protein regulator; Provisional

Probab=99.65  E-value=5.5e-13  Score=116.37  Aligned_cols=247  Identities=10%  Similarity=-0.009  Sum_probs=159.9

Q ss_pred             HHHHHHHHHhhccCCCCccHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh
Q 018743           46 DEAFSTINDMKSVSDCKPDVYTYSILIKSCT---------KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF  116 (351)
Q Consensus        46 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (351)
                      ++|++.|++..+..  +.+...|..+..++.         ..+++++|...+++..+.+ |.+..++..+...+...|++
T Consensus       278 ~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        278 QQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence            67888888877642  223445555544332         2345788888888888776 55777787787888888888


Q ss_pred             HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018743          117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF  196 (351)
Q Consensus       117 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  196 (351)
                      ++|...|++..+..  +.+...+..+...+...|++++|...+++..+.. +.+...+..++..+...|++++|...+++
T Consensus       355 ~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        355 IVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            88888888887763  5556677778888888888888888888887754 22233333344456667888888888888


Q ss_pred             HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cc
Q 018743          197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMKVDSILRQVENSDV-IL  274 (351)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~  274 (351)
                      ......+-++..+..+..++...|+.++|...+.++...  .|+ ....+.+...+...|  ++|...++.+.+..- .+
T Consensus       432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~  507 (553)
T PRK12370        432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID  507 (553)
T ss_pred             HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence            766533224555666777788888888888888886654  333 334455555666666  467776666554211 11


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          275 DTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       275 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      ....+  +...+.-.|+-+.+..+ +++.+.
T Consensus       508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence            11122  33344555666666555 777655

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.65  E-value=8.3e-13  Score=103.07  Aligned_cols=199  Identities=14%  Similarity=0.049  Sum_probs=118.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 018743          138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG  217 (351)
Q Consensus       138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  217 (351)
                      .+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...+.
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~  110 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence            34444555555555555555555554432 233444455555555555555555555555544322 3344555555566


Q ss_pred             hcCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 018743          218 KAGHIEKMEEYFKKMKHRGM-KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG  296 (351)
Q Consensus       218 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  296 (351)
                      ..|++++|...+.+...... +.....+..+...+...|++++|...+.+..+..+. +...+..+...+...|++++|.
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHH
Confidence            66666666666666654321 122344555666677777777777777777665443 4556667777777777888887


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743          297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       297 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  340 (351)
                      ..+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus       190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            777777765 3445566666677777777888887777766554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.65  E-value=6.6e-13  Score=103.63  Aligned_cols=200  Identities=11%  Similarity=0.046  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 018743           65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS  144 (351)
Q Consensus        65 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  144 (351)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..  +.+...+..+..
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~  107 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Confidence            4455566666666666666666666665543 3345566666666666677777777776666542  334455666666


Q ss_pred             HHhcCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 018743          145 AYGNSGNIEKMEKWYNEFNLMGV-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE  223 (351)
Q Consensus       145 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  223 (351)
                      .+...|++++|.+.+++...... +.....+..+...+...|++++|...+.+....... +...+..+...+...|+++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence            66666777777777766654321 122344555666666777777777777766654322 4455666667777777777


Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743          224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN  269 (351)
Q Consensus       224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  269 (351)
                      +|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus       187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            777777776665 244555555666666677777777776666544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=4.1e-12  Score=100.09  Aligned_cols=299  Identities=9%  Similarity=-0.052  Sum_probs=230.1

Q ss_pred             HhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHH
Q 018743           39 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE  118 (351)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  118 (351)
                      .+..++-..|...+-.+.....++-|+.....+...+...|+.++|...|+.....+ +-+........-.+.+.|+++.
T Consensus       206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~  284 (564)
T KOG1174|consen  206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQ  284 (564)
T ss_pred             HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhh
Confidence            344555556666555555445567788889999999999999999999999887654 3344444444555678899998


Q ss_pred             HHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ  198 (351)
Q Consensus       119 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  198 (351)
                      ...+...+....  ..+...|..-.......++++.|+.+-++.++.. +.+...+..-...+...++.++|.-.|+...
T Consensus       285 ~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq  361 (564)
T KOG1174|consen  285 DSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ  361 (564)
T ss_pred             HHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence            888888876652  3445556666666777889999999999988765 4556667666778889999999999999987


Q ss_pred             HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-HHHH-hcCCHhHHHHHHHHhhhcCCccCH
Q 018743          199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV-SAYS-KAGLIMKVDSILRQVENSDVILDT  276 (351)
Q Consensus       199 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~  276 (351)
                      ...+ -+...|.-++.+|...|++.+|..+-....+. ++.+..+...+. ..+. ...--++|.++++...+..+. -.
T Consensus       362 ~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~  438 (564)
T KOG1174|consen  362 MLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YT  438 (564)
T ss_pred             hcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cH
Confidence            7633 37899999999999999999999887776654 345666666553 2232 233457899999988877654 45


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       277 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      ...+.+...+...|..++++.++++....  .||....+.|.+.+...+.+++|.+.|..+++.+|.+..
T Consensus       439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~  506 (564)
T KOG1174|consen  439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR  506 (564)
T ss_pred             HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence            67788889999999999999999998874  789999999999999999999999999999999987643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=9.2e-12  Score=101.87  Aligned_cols=274  Identities=12%  Similarity=0.041  Sum_probs=214.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 018743           64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI  143 (351)
Q Consensus        64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  143 (351)
                      +......-..-+...+++.+..++.+...+.. |+....+..-|.++...|+..+-..+-.++++.  .|..+.+|-++.
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg  319 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVG  319 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHH
Confidence            33444445556777889999999999988876 667777777778899999988888888888876  466778899999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 018743          144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE  223 (351)
Q Consensus       144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  223 (351)
                      -.|.-.|+.++|.++|.+....+ +.=...|..+...|.-.|.-++|...+....+.-.. ....+--+.--|.+.++.+
T Consensus       320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~k  397 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLK  397 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHH
Confidence            88888999999999999876543 222456888888999999999999988877654211 1112233455678889999


Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc----CC--ccCHHhHHHHHHHHHhcCCHHHHHH
Q 018743          224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS----DV--ILDTPFFNCIISAYGQAGDVEKMGE  297 (351)
Q Consensus       224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~~a~~  297 (351)
                      .|.++|.+..... |.|+...+.+.-.....+.+.+|..+|+.....    +.  ..-..+++.|.++|.+.+.+++|+.
T Consensus       398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~  476 (611)
T KOG1173|consen  398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID  476 (611)
T ss_pred             HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence            9999999988763 557778888887777788999999999876521    11  1134578899999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       298 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      .++..... .+-+..++.++.-.|...|+++.|.+.|++.+..+|..
T Consensus       477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            99998876 45588899999999999999999999999998887764

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.63  E-value=1.8e-13  Score=104.36  Aligned_cols=241  Identities=10%  Similarity=0.015  Sum_probs=205.0

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018743          103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG  182 (351)
Q Consensus       103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  182 (351)
                      -+.+.++|.+.|.+.+|.+.|+..++.   .|-+.||..+-.+|.+..++..|+.++.+-.+. .+.++....-..+.+.
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence            356889999999999999999998876   677788999999999999999999999988764 3556666677888899


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHH
Q 018743          183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS  262 (351)
Q Consensus       183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  262 (351)
                      ..++.++|.++++...+... .++.....+...|.-.++++-|+.+|+++.+.|+ -++..|+.+.-+|...++++-++.
T Consensus       302 am~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence            99999999999999888643 3677777777888889999999999999999995 488999999999999999999999


Q ss_pred             HHHHhhhcCCcc--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743          263 ILRQVENSDVIL--DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       263 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  340 (351)
                      -|++....--.|  -..+|-.+.......|++..|.+.|+-....+ ..+...++.|.-.-.+.|+.++|..+++.+.+.
T Consensus       380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            999877543333  35678888888899999999999999988764 336778999998899999999999999999998


Q ss_pred             cccCCCCccC
Q 018743          341 KENSGKKLIQ  350 (351)
Q Consensus       341 ~~~~~~~~~~  350 (351)
                      .|.--++.++
T Consensus       459 ~P~m~E~~~N  468 (478)
T KOG1129|consen  459 MPDMAEVTTN  468 (478)
T ss_pred             Cccccccccc
Confidence            8876665543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.63  E-value=1.1e-11  Score=107.66  Aligned_cols=258  Identities=14%  Similarity=0.092  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC-CCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 018743           82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYN  160 (351)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~  160 (351)
                      ..+..++...-... +-++...+.|...|.-.|++..+..+...+....-.. .-...|..+..+|...|++++|..+|.
T Consensus       253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~  331 (1018)
T KOG2002|consen  253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM  331 (1018)
T ss_pred             HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            34444444443333 3355555666666666666666666666554432110 112235556666666666666666666


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHcC
Q 018743          161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG----HIEKMEEYFKKMKHRG  236 (351)
Q Consensus       161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~  236 (351)
                      +..+..-......+.-+...+.+.|+.+.+...|+.+....+. +..+...+...|...+    ..+.|..++.+..+.-
T Consensus       332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~  410 (1018)
T KOG2002|consen  332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT  410 (1018)
T ss_pred             HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence            6554321111223344556666666666666666666554222 4445555554444443    3344555555544432


Q ss_pred             CCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh----hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC
Q 018743          237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVE----NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER---HCVP  309 (351)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p  309 (351)
                       +.|...|..+...+... +...++..+..+.    ..+..+.+...|.+.......|++..|...|......   ...+
T Consensus       411 -~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~  488 (1018)
T KOG2002|consen  411 -PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK  488 (1018)
T ss_pred             -cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence             33455555555544433 3333344444322    2333345566666666666666666666666665533   1111


Q ss_pred             C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          310 D------NITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       310 ~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      |      ..+-..+.+.+...++++.|.+.|..+++..|.
T Consensus       489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~  528 (1018)
T KOG2002|consen  489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG  528 (1018)
T ss_pred             cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence            1      112233444555556666666666666655443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=4.3e-11  Score=96.14  Aligned_cols=327  Identities=9%  Similarity=0.053  Sum_probs=214.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 018743            7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK   86 (351)
Q Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   86 (351)
                      .|+...|.++|++-.+-  .|+..+|++.|..=.+-+.++.|..+|++..-.   .|++.+|-.....=.+.|....+..
T Consensus       154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k~g~~~~aR~  228 (677)
T KOG1915|consen  154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEKHGNVALARS  228 (677)
T ss_pred             hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHhcCcHHHHHH
Confidence            47788888888887764  788888888888888888888888888888753   6888888777777777888888777


Q ss_pred             HHHHHHHc-CC-CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC----------------------------------
Q 018743           87 ILAEMSYL-GI-ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----------------------------------  130 (351)
Q Consensus        87 ~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------------------  130 (351)
                      +|+...+. |- ..+...+.+....=.++..++.|.-+|+-.+..-                                  
T Consensus       229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk  308 (677)
T KOG1915|consen  229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK  308 (677)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence            77766543 10 0112222332222223333444433333322210                                  


Q ss_pred             --------CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHH-------HHHHH---HHHHHhcCCHHHHHH
Q 018743          131 --------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ-------TLNIL---TKSYGRAGMYDKMRS  192 (351)
Q Consensus       131 --------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l---~~~~~~~~~~~~a~~  192 (351)
                              ..+.|-.+|--.+..-...|+.+...++|++.+.. ++|-..       +|..+   +-.-....+.+.+.+
T Consensus       309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~  387 (677)
T KOG1915|consen  309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ  387 (677)
T ss_pred             hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence                    12344455666666666677777777777777654 344221       11111   111124466777777


Q ss_pred             HHHHHHHcCCCCCHHhHHHH----HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743          193 VMDFMQKRFFFPTVVTYNIV----IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE  268 (351)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  268 (351)
                      +++...+. ++....||..+    .....++.+...|.+++...+.  ..|...+|...|..-.+.++++.+.+++++..
T Consensus       388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfl  464 (677)
T KOG1915|consen  388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFL  464 (677)
T ss_pred             HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            77776663 22234444333    2333456777888888777654  47778888888888888888999999999888


Q ss_pred             hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC-VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      ..++. +..+|......-...|+.+.|..+|+-+++... ......|.+.|.-=...|.++.|..+++++++..+.
T Consensus       465 e~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h  539 (677)
T KOG1915|consen  465 EFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH  539 (677)
T ss_pred             hcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence            88776 778888888888888999999999988886532 122345666666667788899999999888876554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.62  E-value=1.7e-11  Score=103.89  Aligned_cols=295  Identities=14%  Similarity=0.125  Sum_probs=204.0

Q ss_pred             HHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh--
Q 018743           35 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK--  112 (351)
Q Consensus        35 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  112 (351)
                      ....+...|++++|++.++.-..  .+.............+.+.|+.++|..++..+.+.+ |.|..-|..+..+..-  
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~   86 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL   86 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence            44566788999999999987654  233344556677788889999999999999999886 4566666666666522  


Q ss_pred             ---cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018743          113 ---AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD  188 (351)
Q Consensus       113 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  188 (351)
                         ..+.+...++++++...   -|...+...+.-.+.....+ ..+..++..+...|+|+   +|+.+-..|......+
T Consensus        87 ~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~  160 (517)
T PF12569_consen   87 QLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA  160 (517)
T ss_pred             ccccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence               23567778888888665   24333333333223322233 24455666677777543   4555555566555555


Q ss_pred             HHHHHHHHHHHc----C----------CCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 018743          189 KMRSVMDFMQKR----F----------FFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS  252 (351)
Q Consensus       189 ~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  252 (351)
                      -...++......    +          -+|+.  .++..+...|...|++++|++++++.++.. |..+..|..-.+.+-
T Consensus       161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilK  239 (517)
T PF12569_consen  161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILK  239 (517)
T ss_pred             HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence            555555554322    1          12343  244566778888999999999999988873 334778888889999


Q ss_pred             hcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------HH--HHHHHHHHHc
Q 018743          253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI------TF--ATMIQAYNAL  324 (351)
Q Consensus       253 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~  324 (351)
                      +.|++.+|...++..+..+.. |..+-+..+..+.++|++++|.+++..+...+..|-..      .|  .-...+|.+.
T Consensus       240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~  318 (517)
T PF12569_consen  240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ  318 (517)
T ss_pred             HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988877 88888888889999999999999999888765433322      22  3445678899


Q ss_pred             CCHHHHHHHHHHHHHh
Q 018743          325 GMTEAAQNLENKMIAM  340 (351)
Q Consensus       325 g~~~~A~~~~~~~~~~  340 (351)
                      |++..|++.|..+.+.
T Consensus       319 ~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  319 GDYGLALKRFHAVLKH  334 (517)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            9999998888877654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=6.6e-12  Score=102.72  Aligned_cols=288  Identities=11%  Similarity=0.014  Sum_probs=231.0

Q ss_pred             CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH
Q 018743           26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT  105 (351)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  105 (351)
                      .-++.......+-+...+++++..++++.+.+..  ++....+..-|.++...|+..+-..+=.++.+.- |..+.+|-+
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a  317 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA  317 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence            3466777777888889999999999999999865  4555556666778889999888888888888764 668899999


Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018743          106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG  185 (351)
Q Consensus       106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  185 (351)
                      +...|...|+..+|.+.|.+.....  +.-...|-.+...++-.|..++|+..+....+.= +....-+..+.--|.+.+
T Consensus       318 Vg~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~  394 (611)
T KOG1173|consen  318 VGCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTN  394 (611)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhc
Confidence            9999999999999999999987653  2234579999999999999999999998876531 112122333455677889


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC----ccHHHHHHHHHHHHhcCCHhH
Q 018743          186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR--GMK----PNSITYCSLVSAYSKAGLIMK  259 (351)
Q Consensus       186 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~  259 (351)
                      +.+.|.+.|.+.....+. |+..++-+.......+.+.+|..+|+..+..  .+.    --..+++.|..+|.+.+.+++
T Consensus       395 n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e  473 (611)
T KOG1173|consen  395 NLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE  473 (611)
T ss_pred             cHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence            999999999998876443 7888888888888889999999999987621  111    123468899999999999999


Q ss_pred             HHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743          260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA  323 (351)
Q Consensus       260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  323 (351)
                      |+..++......+. +..++.++.-.|...|+++.|++.|.+...  +.|+..+-..++..+..
T Consensus       474 AI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  474 AIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence            99999999988776 899999999999999999999999999886  57887777766665443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1.5e-11  Score=98.99  Aligned_cols=307  Identities=11%  Similarity=0.002  Sum_probs=217.6

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743           30 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID  108 (351)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (351)
                      ..+.....-|.++|++++|++.|.+.++.   .|+ +..|.....+|...|+|+++.+--....+.+ |.-+..+..-..
T Consensus       116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~  191 (606)
T KOG0547|consen  116 AALKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRAS  191 (606)
T ss_pred             HHHHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence            34555667788999999999999999974   677 7889999999999999999998888877664 222445555556


Q ss_pred             HHhhcCChHHHHHHHHH------------------------------HHh--cCCCCCCHhHHHHHHHHHhc--------
Q 018743          109 GYGKAKKFEEMESSFSA------------------------------MVE--SGGCHPDIFTLNSMISAYGN--------  148 (351)
Q Consensus       109 ~~~~~~~~~~a~~~~~~------------------------------~~~--~~~~~~~~~~~~~l~~~~~~--------  148 (351)
                      ++-..|++++|+.-+.-                              -.+  +...-|+.....+....+..        
T Consensus       192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~  271 (606)
T KOG0547|consen  192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN  271 (606)
T ss_pred             HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence            66666666665432111                              011  11223443333333322211        


Q ss_pred             CC--------------------CHHHHHHHHHHHHh---cCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018743          149 SG--------------------NIEKMEKWYNEFNL---MGVKAD---------IQTLNILTKSYGRAGMYDKMRSVMDF  196 (351)
Q Consensus       149 ~~--------------------~~~~a~~~~~~~~~---~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~  196 (351)
                      .+                    .+..+...+.+-..   .....+         ..+.......+.-.|+.-.|..-|+.
T Consensus       272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~  351 (606)
T KOG0547|consen  272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA  351 (606)
T ss_pred             CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence            00                    11222222211110   001111         12222233344556888899999999


Q ss_pred             HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCH
Q 018743          197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT  276 (351)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  276 (351)
                      .+.....+ ...|-.+...|....+.++....|.+..+.+ +-++.+|..-.+.+.-.+++++|..-|++....++. +.
T Consensus       352 ~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~  428 (606)
T KOG0547|consen  352 AIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NA  428 (606)
T ss_pred             HHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hh
Confidence            88875543 3337778888999999999999999999876 557778888888888889999999999999998776 77


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       277 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      ..|-.+..+..+.++++++...|++.++. ++-.+..|+.....+...++++.|.+.|+..+.+.+..
T Consensus       429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~  495 (606)
T KOG0547|consen  429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE  495 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence            78888888888999999999999999986 66668899999999999999999999999999998883

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=7.6e-11  Score=94.80  Aligned_cols=323  Identities=12%  Similarity=0.107  Sum_probs=199.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHHHHHhcCCHHHHH
Q 018743            7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIKSCTKFHRFDLIE   85 (351)
Q Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~   85 (351)
                      +++++.|..+|++.+..+.. +...|-..+..=.++..+..|..++++....   -|-+. .|-..+..=-..|+...|.
T Consensus        86 q~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~gaR  161 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGAR  161 (677)
T ss_pred             HHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHHH
Confidence            56788899999999887655 7788888888888888888888888887763   34432 3444444445677888888


Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 018743           86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM  165 (351)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  165 (351)
                      ++|++-.+-  .|+...|++.++.=.+.+.++.|..++++.+-   +.|+..+|-.....-.+.|....+..+|+...+.
T Consensus       162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~  236 (677)
T KOG1915|consen  162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF  236 (677)
T ss_pred             HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            888877654  67888888888887788888888888888764   4677777777777777777777777777665432


Q ss_pred             CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------------------------------------H
Q 018743          166 GV--KADIQTLNILTKSYGRAGMYDKMRSVMDFMQ--------------------------------------------K  199 (351)
Q Consensus       166 ~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------------------------------------~  199 (351)
                      --  ..+...+.++...-.++..++.|..+|.-..                                            .
T Consensus       237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~  316 (677)
T KOG1915|consen  237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS  316 (677)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence            10  0112223333332223333333333322221                                            1


Q ss_pred             cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH--HHHHHHH--------HHHhcCCHhHHHHHHHHhhh
Q 018743          200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI--TYCSLVS--------AYSKAGLIMKVDSILRQVEN  269 (351)
Q Consensus       200 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~--------~~~~~g~~~~a~~~~~~~~~  269 (351)
                      .+ +-|-.+|--.++.-...|+.+...++|++.+.. ++|-..  .|...|-        .-....+++.+.++++...+
T Consensus       317 ~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~  394 (677)
T KOG1915|consen  317 KN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD  394 (677)
T ss_pred             hC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            11 224556666666666667777777777777654 344211  1111110        11123444444444443322


Q ss_pred             ------------------------------------cCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 018743          270 ------------------------------------SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT  313 (351)
Q Consensus       270 ------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  313 (351)
                                                          .|..|...+|...|..-.+.++++.+..+|++.++.+ +-|..+
T Consensus       395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~  473 (677)
T KOG1915|consen  395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYA  473 (677)
T ss_pred             hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHH
Confidence                                                1334556667777777777777777777777777653 335566


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743          314 FATMIQAYNALGMTEAAQNLENKMIAMK  341 (351)
Q Consensus       314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~  341 (351)
                      |......=...|+.|.|..+|+-+++..
T Consensus       474 W~kyaElE~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  474 WSKYAELETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence            7766666667777777777777776543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.58  E-value=5.2e-13  Score=101.95  Aligned_cols=230  Identities=12%  Similarity=0.004  Sum_probs=198.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc
Q 018743           69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN  148 (351)
Q Consensus        69 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  148 (351)
                      +.+.++|.+.|-+.+|.+.++...+.  .|-+.||..|-+.|.+..+...|+.++.+-++.  .+-++.....+.+.+-.
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence            56778899999999999999988876  577889999999999999999999999998876  45555555667788888


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 018743          149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY  228 (351)
Q Consensus       149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  228 (351)
                      .++.++|.++|+...+.. +.++.....+...|.-.++++.|...++++.+.|.. ++..|+.+.-+|.-.+++|-++..
T Consensus       303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence            999999999999988765 566777777778888899999999999999999987 888999999999999999999999


Q ss_pred             HHHHHHcCCCcc--HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          229 FKKMKHRGMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       229 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      |.+....--.|+  ...|-.+.......||+..|.+.|+-....+.. +...++.|.-.-.+.|++++|..++......
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            999887644444  356888888888999999999999999988766 7889999999999999999999999988764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.58  E-value=1e-11  Score=99.32  Aligned_cols=280  Identities=8%  Similarity=0.068  Sum_probs=205.3

Q ss_pred             HHhccCChHHHHHHHHHhhccCCCCccHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh
Q 018743           38 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI-LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF  116 (351)
Q Consensus        38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (351)
                      .+.++|+++.|++++.-..+...-..+...-+. .+..+..-.++..|.++-+...... .-+......-...-...|++
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~  506 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL  506 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence            477889999999999888763221222221121 1222222346777777777665443 33444443334445668999


Q ss_pred             HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018743          117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF  196 (351)
Q Consensus       117 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  196 (351)
                      ++|.+.+++.+...  ..-......+...+-..|++++|+++|-++... +..+..+...+...|-...+..+|++++.+
T Consensus       507 dka~~~ykeal~nd--asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q  583 (840)
T KOG2003|consen  507 DKAAEFYKEALNND--ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ  583 (840)
T ss_pred             HHHHHHHHHHHcCc--hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            99999999987542  112222333344567889999999999887542 245677788888999999999999999887


Q ss_pred             HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCH
Q 018743          197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT  276 (351)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  276 (351)
                      .... ++.|+...+.+...|-+.|+-..|.+.+-+--+. ++-+..+...|...|....-+++++..|++..-  +.|+.
T Consensus       584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~  659 (840)
T KOG2003|consen  584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ  659 (840)
T ss_pred             hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence            7654 5558999999999999999999999887665444 567889999999999999999999999998653  46788


Q ss_pred             HhHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 018743          277 PFFNCIIS-AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM  326 (351)
Q Consensus       277 ~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  326 (351)
                      .-|..++. ++.+.|++.+|.++|+..... ++-|......|++.+...|.
T Consensus       660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            88887765 556789999999999999876 77788899999998888875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.56  E-value=5e-11  Score=101.05  Aligned_cols=290  Identities=15%  Similarity=0.138  Sum_probs=207.5

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHH-HHHHHHHh----
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS-ILIKSCTK----   77 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~----   77 (351)
                      ++...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.   .|+...|. .+..+...    
T Consensus        13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhccc
Confidence            456789999999999886554 4435677788899999999999999999999984   45555554 44444422    


Q ss_pred             -cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChH-HHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHH
Q 018743           78 -FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE-EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM  155 (351)
Q Consensus        78 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  155 (351)
                       ..+.+....+++++...-  |.......+.-.+.....+. .+..++.....+ |+|+   +|+.+-..|.......-.
T Consensus        89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs---lF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS---LFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHcChhHHHHH
Confidence             235678888999887653  44333333332233323333 344555666666 4443   567777777766555555


Q ss_pred             HHHHHHHHhc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 018743          156 EKWYNEFNLM----G----------VKADI--QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA  219 (351)
Q Consensus       156 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  219 (351)
                      .+++......    +          -+|+.  .++..+...|...|++++|.+.++..+++.+. .+..|..-.+.+-..
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~  241 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA  241 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence            6666555322    1          12343  34566788899999999999999999987433 478888889999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHh--------HHHHHHHHHhcCC
Q 018743          220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF--------FNCIISAYGQAGD  291 (351)
Q Consensus       220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~  291 (351)
                      |++++|.+.++..+... .-|-..-+..+..+.+.|++++|.+++....+.+..|....        ......+|.+.|+
T Consensus       242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~  320 (517)
T PF12569_consen  242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD  320 (517)
T ss_pred             CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999886 45777888889999999999999999999887765433222        2455778999999


Q ss_pred             HHHHHHHHHHHHh
Q 018743          292 VEKMGELFLTMKE  304 (351)
Q Consensus       292 ~~~a~~~~~~~~~  304 (351)
                      +..|++.|....+
T Consensus       321 ~~~ALk~~~~v~k  333 (517)
T PF12569_consen  321 YGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999887776653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.55  E-value=1.4e-11  Score=103.15  Aligned_cols=246  Identities=20%  Similarity=0.222  Sum_probs=182.1

Q ss_pred             CCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc----CC-CCCCHhH-HHHHHHHHhcCCCHHHHHHHHHHHHhc---
Q 018743           95 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES----GG-CHPDIFT-LNSMISAYGNSGNIEKMEKWYNEFNLM---  165 (351)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~---  165 (351)
                      +.|.-..+...+...|...|+++.|..+++..++.    .| ..|...+ .+.+...|...+++++|..+|+++...   
T Consensus       194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            33444567777999999999999999999988764    11 1344333 344778899999999999999998652   


Q ss_pred             --C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c--C-CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          166 --G--VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK---R--F-FFPTV-VTYNIVIETFGKAGHIEKMEEYFKKMKH  234 (351)
Q Consensus       166 --~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~  234 (351)
                        |  .+.-..+++.|..+|.+.|++++|...+++..+   .  + ..|.+ ..++.+...+...+++++|..+++...+
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence              2  112245678888899999999999988877543   1  1 12222 3466677888899999999999987654


Q ss_pred             c---CCCc----cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc----CC---ccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743          235 R---GMKP----NSITYCSLVSAYSKAGLIMKVDSILRQVENS----DV---ILDTPFFNCIISAYGQAGDVEKMGELFL  300 (351)
Q Consensus       235 ~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~  300 (351)
                      .   -+.+    -..+++.|...|...|++++|..+++.+...    +-   .-....++.+...|.+.+++.+|.++|.
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~  433 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE  433 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence            2   1122    2357899999999999999999999987632    11   1124467888999999999999999999


Q ss_pred             HHHhc----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743          301 TMKER----HC-VPD-NITFATMIQAYNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       301 ~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  340 (351)
                      +....    |. .|+ ..+|..|..+|...|+++.|.++.+.+...
T Consensus       434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            86532    21 133 458899999999999999999999988754

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.54  E-value=1.8e-12  Score=111.22  Aligned_cols=256  Identities=14%  Similarity=0.155  Sum_probs=154.4

Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743           15 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL   94 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   94 (351)
                      .++-.+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.- ...+.+...++.++.+..+.++.+.+.         
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk---------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK---------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC---------
Confidence            45667788899999999999999999999999998 8888876 555667788999998888888877665         


Q ss_pred             CCCCCHhHHHHHHHHHhhcCChHH---HHHHHHHHHhcC---CCC-CCHhH-------------HHHHHHHHhcCCCHHH
Q 018743           95 GIECSAVTYNTIIDGYGKAKKFEE---MESSFSAMVESG---GCH-PDIFT-------------LNSMISAYGNSGNIEK  154 (351)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~---~~~-~~~~~-------------~~~l~~~~~~~~~~~~  154 (351)
                        .|.+.||..|..+|...|+...   +.+.+..+....   |+. |....             -...+....-.|-|+.
T Consensus        80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq  157 (1088)
T KOG4318|consen   80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ  157 (1088)
T ss_pred             --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence              6788999999999999998654   333222222110   100 00000             0111222222333444


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH  234 (351)
Q Consensus       155 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  234 (351)
                      +++++..+..... ..+.  ..+++-+...  .....++........-.|++.+|..++..-..+|+.+.|..++.+|.+
T Consensus       158 llkll~~~Pvsa~-~~p~--~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke  232 (1088)
T KOG4318|consen  158 LLKLLAKVPVSAW-NAPF--QVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE  232 (1088)
T ss_pred             HHHHHhhCCcccc-cchH--HHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence            4444433221110 0001  1112222211  222233333322221146777777777777777777777777777777


Q ss_pred             cCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743          235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD  291 (351)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  291 (351)
                      .|++.+.+-|..|+-+   .++..-++.+++.|...|+.|+..++...+..+...|.
T Consensus       233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            7777776666666644   56666667777777777777777777666665555443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.49  E-value=1.6e-10  Score=84.27  Aligned_cols=198  Identities=13%  Similarity=0.061  Sum_probs=108.3

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743          102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY  181 (351)
Q Consensus       102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  181 (351)
                      +...|.-.|...|+...|..-+++.++..  +.+..+|..+...|-+.|+.+.|.+.|++..+.. +.+..+.|.....+
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL  113 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence            34445555666666666666666666553  3444556666666666666666666666665543 34455556666666


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHH
Q 018743          182 GRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV  260 (351)
Q Consensus       182 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  260 (351)
                      |..|.+++|...|+........ -...+|..+.-+..+.|+++.|.+.|++..+.. +-...+...+.....+.|++..|
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence            6666666666666655443211 123445555555555666666666666555543 22334455555555555555555


Q ss_pred             HHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      ...++.....+. ++..+....|+.-...|+.+.+-+.=..+..
T Consensus       193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            555555554443 4555555555555555555555554444443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.48  E-value=2.4e-10  Score=83.38  Aligned_cols=199  Identities=14%  Similarity=0.066  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743           31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY  110 (351)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (351)
                      +...|.-.|.+.|+...|..-+++..+..  +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL  113 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence            34445556666666666666666666532  3334556666666666666666666666666654 44556666666666


Q ss_pred             hhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018743          111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM  190 (351)
Q Consensus       111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  190 (351)
                      |..|++++|.+.|++.........-..+|..+.-+..+.|+.+.|.+.|++..+.. +....+...+.....+.|++-.|
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence            66666666666666666554444444456666666666666666666666666543 23344455566666666666666


Q ss_pred             HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH  234 (351)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  234 (351)
                      ...++.....+. ++..+.-..|+.-...|+.+.+-++=..+.+
T Consensus       193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            666666655544 4555555555655566666655555444444

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.46  E-value=4.9e-10  Score=90.00  Aligned_cols=204  Identities=9%  Similarity=-0.021  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018743          101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS  180 (351)
Q Consensus       101 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  180 (351)
                      ..|..+...+...|++++|...|++..+..  +.+...|+.+...+...|++++|...|+...+.. +.+...+..+..+
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~  141 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA  141 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            445555666666666666666666666552  4455566666666666666666666666666543 2334555666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHH
Q 018743          181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV  260 (351)
Q Consensus       181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  260 (351)
                      +...|++++|.+.++...+..+. +. ............+++++|...+.+..... .|+...+ .+  .....|+...+
T Consensus       142 l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~  215 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISEE  215 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCHH
Confidence            66666777777666666654322 21 11111122334556677776665544322 2221111 12  22234444333


Q ss_pred             HHHHHHhhh---cCCc---cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018743          261 DSILRQVEN---SDVI---LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA  315 (351)
Q Consensus       261 ~~~~~~~~~---~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  315 (351)
                       ..+..+.+   ..+.   .....|..+...+.+.|++++|+..|++..+.+ +||..-+.
T Consensus       216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~  274 (296)
T PRK11189        216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHR  274 (296)
T ss_pred             -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence             23333321   1111   023456677777777777777777777777653 33444443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.46  E-value=1e-09  Score=88.10  Aligned_cols=220  Identities=11%  Similarity=0.020  Sum_probs=101.4

Q ss_pred             CChHHHHHHHHHhhccCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHH
Q 018743           43 GLLDEAFSTINDMKSVSDCKPD--VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME  120 (351)
Q Consensus        43 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  120 (351)
                      +..+.++.-+.++.......|+  ...|..+...+...|+++.|...|++..+.. |.+...|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            4445555555555532222222  2334444555555566666666666555554 334555566666666666666666


Q ss_pred             HHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743          121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR  200 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  200 (351)
                      ..|++..+..  +.+..+|..+..++...|++++|.+.++...+..  |+..............++.++|...+......
T Consensus       119 ~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        119 EAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            6666655542  3334455555555555666666666666555432  22211111122223345556666665443322


Q ss_pred             CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH---HcCC---CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743          201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK---HRGM---KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV  272 (351)
Q Consensus       201 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  272 (351)
                      . .|+...+ .+..  ...|+...+ ..+..+.   +...   +.....|..+...+...|++++|...|++..+.++
T Consensus       195 ~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        195 L-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             C-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            1 1111111 1111  122332222 1222222   1100   11234556666666666666666666666665543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.45  E-value=9.5e-09  Score=85.64  Aligned_cols=311  Identities=10%  Similarity=-0.058  Sum_probs=190.9

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH-
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT-  105 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-  105 (351)
                      ....|..+...+...|+.+.+...+....+.....++.. ........+...|++++|..++++..+.. |.+...+.. 
T Consensus         5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~   83 (355)
T cd05804           5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH   83 (355)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence            355666777777777888887777766554332233322 22222334667899999999999988764 445545442 


Q ss_pred             --HHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018743          106 --IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR  183 (351)
Q Consensus       106 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  183 (351)
                        +.......+....+.+.+......  .+........+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~  160 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLWAPE--NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM  160 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhccCcC--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence              222222345555555555542111  23333445566678889999999999999998865 5556778888899999


Q ss_pred             cCCHHHHHHHHHHHHHcCCC-CCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHHHH-H--HHHHHHHhcCC
Q 018743          184 AGMYDKMRSVMDFMQKRFFF-PTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGM-KPNSITY-C--SLVSAYSKAGL  256 (351)
Q Consensus       184 ~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~  256 (351)
                      .|++++|...++........ |+.  ..|..+...+...|++++|..++++...... .+..... +  .++.-+...|.
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  240 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH  240 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence            99999999999987765322 232  3455678888999999999999999864322 1222111 1  23333334444


Q ss_pred             HhHHHHH---HHHhhhcCC-ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------C-CHHHHHHHHHHHHHc
Q 018743          257 IMKVDSI---LRQVENSDV-ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-------P-DNITFATMIQAYNAL  324 (351)
Q Consensus       257 ~~~a~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------p-~~~~~~~l~~~~~~~  324 (351)
                      ...+.+.   ......... ............++...|+.++|..+++.+......       . ..........++...
T Consensus       241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~  320 (355)
T cd05804         241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE  320 (355)
T ss_pred             CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence            3333332   121111101 111122225666788899999999999998753211       0 112222333456789


Q ss_pred             CCHHHHHHHHHHHHHhcc
Q 018743          325 GMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       325 g~~~~A~~~~~~~~~~~~  342 (351)
                      |++++|.+.+...+....
T Consensus       321 g~~~~A~~~L~~al~~a~  338 (355)
T cd05804         321 GNYATALELLGPVRDDLA  338 (355)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999999887653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13041 PPR_2: PPR repeat family

Probab=99.44  E-value=4.6e-13  Score=75.89  Aligned_cols=50  Identities=34%  Similarity=0.515  Sum_probs=42.2

Q ss_pred             cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743          274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA  323 (351)
Q Consensus       274 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  323 (351)
                      ||..+||.++++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67888888888888888888888888888888888888888888888764

>PF13041 PPR_2: PPR repeat family

Probab=99.43  E-value=6.7e-13  Score=75.23  Aligned_cols=49  Identities=39%  Similarity=0.584  Sum_probs=27.6

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 018743           63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG  111 (351)
Q Consensus        63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  111 (351)
                      ||+.+|++++++|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.43  E-value=1.1e-08  Score=87.32  Aligned_cols=337  Identities=12%  Similarity=0.104  Sum_probs=198.0

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHH-hcCCHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT-KFHRFD   82 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~   82 (351)
                      +..+|+++.+.+.|++....-.. ..+.|..+...+...|.-..|+.+++.-.....-+++...+-..-..|. +.+..+
T Consensus       333 l~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~e  411 (799)
T KOG4162|consen  333 LSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVE  411 (799)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhh
Confidence            34566777777777766544333 5566677777777777766677666665542221223333333333333 334444


Q ss_pred             HHHHHHHHHHHc--CC--CCCHhHHHHHHHHHhhc-----------CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743           83 LIEKILAEMSYL--GI--ECSAVTYNTIIDGYGKA-----------KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG  147 (351)
Q Consensus        83 ~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  147 (351)
                      +++++-.++...  +.  ......|..+.-+|...           ....++++.+++..+.++..|+...|  +.--|+
T Consensus       412 egldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A  489 (799)
T KOG4162|consen  412 EGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYA  489 (799)
T ss_pred             hHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHH
Confidence            544444444331  00  11222333333333211           12344555666665554333333222  222344


Q ss_pred             cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC------------------------
Q 018743          148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FF------------------------  202 (351)
Q Consensus       148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~------------------------  202 (351)
                      -.++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+..... +.                        
T Consensus       490 ~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t  569 (799)
T KOG4162|consen  490 EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDT  569 (799)
T ss_pred             HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHH
Confidence            45566666666666665544455555555555555555555555544432211 00                        


Q ss_pred             -----------------------------------------------------------------------CCC------
Q 018743          203 -----------------------------------------------------------------------FPT------  205 (351)
Q Consensus       203 -----------------------------------------------------------------------~~~------  205 (351)
                                                                                             .|+      
T Consensus       570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~  649 (799)
T KOG4162|consen  570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLL  649 (799)
T ss_pred             HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHH
Confidence                                                                                   000      


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743          206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA  285 (351)
Q Consensus       206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  285 (351)
                      ...|......+.+.++.++|...+.+..... +.....|......+...|..++|...|......++. ++.+..++..+
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~  727 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAEL  727 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence            0122333444555556666665555555442 444555666666777788899999999888887766 77889999999


Q ss_pred             HHhcCCHHHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          286 YGQAGDVEKMGE--LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       286 ~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      +.+.|+..-|..  ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.|+...++.+..|.
T Consensus       728 lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  728 LLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            999999888887  999999875 347889999999999999999999999999998877654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.40  E-value=9.1e-10  Score=92.52  Aligned_cols=239  Identities=16%  Similarity=0.167  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCHh-HHHHHHHHHhhcCChHHHHHHHHHHHhcC-----CC
Q 018743           65 VYTYSILIKSCTKFHRFDLIEKILAEMSYL-----G-IECSAV-TYNTIIDGYGKAKKFEEMESSFSAMVESG-----GC  132 (351)
Q Consensus        65 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~  132 (351)
                      ..+...+...|...|+++.|..+++...+.     | ..|... ..+.+...|...+++++|..+|+++....     ..
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            456666888999999999999999988665     2 123333 33447788999999999999999886531     12


Q ss_pred             CCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 018743          133 HPD-IFTLNSMISAYGNSGNIEKMEKWYNEFNLM-----GV-KADI-QTLNILTKSYGRAGMYDKMRSVMDFMQKR---F  201 (351)
Q Consensus       133 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~  201 (351)
                      .|. ..+++.|..+|.+.|++++|..++++..+-     +. .|.. ..++.+...+...+++++|..++....+.   -
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            222 346788888999999999998888776431     21 1222 24567778888999999999998875432   1


Q ss_pred             CCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C---CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh-
Q 018743          202 FFP----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG----M---KPNSITYCSLVSAYSKAGLIMKVDSILRQVEN-  269 (351)
Q Consensus       202 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-  269 (351)
                      +.+    -..+++.+...|...|++++|.+++++++...    .   .-....++.+...|.+.+.+++|.++|.+... 
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            222    24678999999999999999999999986431    1   12245678899999999999999999987542 


Q ss_pred             ---cCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          270 ---SDVI--LDTPFFNCIISAYGQAGDVEKMGELFLTMK  303 (351)
Q Consensus       270 ---~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  303 (351)
                         .|+.  -...+|..|...|...|++++|+++.+...
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               2222  134578899999999999999999998876

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.38  E-value=8.2e-11  Score=101.35  Aligned_cols=256  Identities=14%  Similarity=0.154  Sum_probs=180.6

Q ss_pred             HHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 018743           51 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG  130 (351)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  130 (351)
                      ++-.+.. .|+.|+..||..++.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.          
T Consensus        12 fla~~e~-~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   12 FLALHEI-SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             HHHHHHH-hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            4444555 789999999999999999999999998 9999988888889999999999998888876654          


Q ss_pred             CCCCCHhHHHHHHHHHhcCCCHHH---HHHHHHHH----HhcCCCCCHHHH--------------HHHHHHHHhcCCHHH
Q 018743          131 GCHPDIFTLNSMISAYGNSGNIEK---MEKWYNEF----NLMGVKADIQTL--------------NILTKSYGRAGMYDK  189 (351)
Q Consensus       131 ~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~  189 (351)
                        .|.+.+|+.+..+|...||..-   +.+.+..+    ...|+-.....+              ...+....-.|-++.
T Consensus        80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq  157 (1088)
T KOG4318|consen   80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ  157 (1088)
T ss_pred             --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence              5677899999999999999754   33322222    122221111111              112223334455555


Q ss_pred             HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743          190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE  268 (351)
Q Consensus       190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  268 (351)
                      +.+++..+...... .+..  .+++-+..... +++-..+-+...+   .|++.+|..++..-...|+.+.|..++.+|.
T Consensus       158 llkll~~~Pvsa~~-~p~~--vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk  231 (1088)
T KOG4318|consen  158 LLKLLAKVPVSAWN-APFQ--VFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK  231 (1088)
T ss_pred             HHHHHhhCCccccc-chHH--HHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence            55555444322111 1111  12433333322 3333333222222   5899999999999999999999999999999


Q ss_pred             hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 018743          269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA  329 (351)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  329 (351)
                      +.|+..+...|..|+-+   .++...+..+++.|.+.|+.|+..|+.-.+..+...|....
T Consensus       232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~  289 (1088)
T KOG4318|consen  232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY  289 (1088)
T ss_pred             HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence            99999888888888766   88899999999999999999999999988888877665433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.38  E-value=7.3e-09  Score=86.69  Aligned_cols=323  Identities=13%  Similarity=0.132  Sum_probs=197.9

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      +...|+.++|........+.++. +...|+.+.-.+....++++|+..|.......  +.|...|.-+.-.-++.++++.
T Consensus        51 L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   51 LNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             hhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhh
Confidence            34568888888888888877666 78888888888888888999999998888642  4556667666666667788877


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH------HHHhcCCCHHHHHH
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI------SAYGNSGNIEKMEK  157 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~a~~  157 (351)
                      .......+.+.. +.....|..++.++.-.|+...|..+++...+.....|+...+....      ......|..+.|.+
T Consensus       128 ~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale  206 (700)
T KOG1156|consen  128 YLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE  206 (700)
T ss_pred             HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            777777776653 44566777788888888888888888888876643346655544332      33455677777777


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH-HHHhcCCHHHHH-HHH------
Q 018743          158 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE-TFGKAGHIEKME-EYF------  229 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~------  229 (351)
                      .+..-... +......-..-...+.+.+++++|..++..+...  .||...|...+. ++.+-.+.-++. .+|      
T Consensus       207 ~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~  283 (700)
T KOG1156|consen  207 HLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK  283 (700)
T ss_pred             HHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence            66554321 1111222234456677788888888888888776  345544444333 222121111211 233      


Q ss_pred             ----------------------------HHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHh--------hhcC--
Q 018743          230 ----------------------------KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV--------ENSD--  271 (351)
Q Consensus       230 ----------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~--  271 (351)
                                                  ..+.+.|+++-   +..+...|-.   ..+.- +++++        ...+  
T Consensus       284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~---p~k~~-~le~Lvt~y~~~L~~~~~f  356 (700)
T KOG1156|consen  284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKD---PEKVA-FLEKLVTSYQHSLSGTGMF  356 (700)
T ss_pred             CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhc---hhHhH-HHHHHHHHHHhhcccccCC
Confidence                                        33333343321   1222222211   11111 22221        1110  


Q ss_pred             --------CccCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743          272 --------VILDTPF--FNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       272 --------~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  340 (351)
                              -.|.+..  +-.++..+-+.|+++.|...++..+++  .|+ +..|..-.+.+...|+.++|..++++..+.
T Consensus       357 ~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el  434 (700)
T KOG1156|consen  357 NFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL  434 (700)
T ss_pred             CcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence                    0233333  345667788888888888888888875  444 345556667788888888888888887766


Q ss_pred             cc
Q 018743          341 KE  342 (351)
Q Consensus       341 ~~  342 (351)
                      +.
T Consensus       435 D~  436 (700)
T KOG1156|consen  435 DT  436 (700)
T ss_pred             cc
Confidence            54

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.38  E-value=7.4e-11  Score=93.32  Aligned_cols=253  Identities=10%  Similarity=0.070  Sum_probs=147.1

Q ss_pred             HHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC
Q 018743           36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK  115 (351)
Q Consensus        36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  115 (351)
                      ++-+.-.|++..++.-.+ ... ..-..+......+.+++...|+.+.++   .++.... +|.......+...+...++
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~-~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~   81 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKS-FSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSD   81 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHT-STCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred             HHHHHHhhhHHHHHHHhh-ccC-CCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccc
Confidence            344556788888876665 322 111223444556667777788766443   3333333 5666666666555554455


Q ss_pred             hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018743          116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD  195 (351)
Q Consensus       116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  195 (351)
                      -+.++.-+++.........+..........+...|++++|+++++..      .+.......+..+.+.++++.|.+.++
T Consensus        82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~  155 (290)
T PF04733_consen   82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK  155 (290)
T ss_dssp             HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55665555554333211122223333335566678888887776542      355666677777888888888888888


Q ss_pred             HHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 018743          196 FMQKRFFFPTVVTYNIVIETFGK----AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD  271 (351)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  271 (351)
                      .|.+.  ..| .+...+..++..    .+.+.+|..+|+++.+. .++++.+.+.+..++...|++++|..++.+....+
T Consensus       156 ~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~  231 (290)
T PF04733_consen  156 NMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD  231 (290)
T ss_dssp             HHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred             HHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence            87764  223 333334444433    23577888888886654 46677777777777778888888888887777665


Q ss_pred             CccCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 018743          272 VILDTPFFNCIISAYGQAGDV-EKMGELFLTMKER  305 (351)
Q Consensus       272 ~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~  305 (351)
                      +. ++.++..++.+....|+. +.+.+.+..+...
T Consensus       232 ~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  232 PN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             cC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            55 566666677777777776 5566677776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=2.7e-08  Score=82.60  Aligned_cols=118  Identities=14%  Similarity=0.027  Sum_probs=68.8

Q ss_pred             cccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCH
Q 018743            2 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF   81 (351)
Q Consensus         2 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (351)
                      +.+.+.|++++|.+....++..++. +..++..-+.++.+.+++++|+.+.+.-..   ...+...+..-.-+..+.+..
T Consensus        20 n~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Yrlnk~   95 (652)
T KOG2376|consen   20 NRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCEYRLNKL   95 (652)
T ss_pred             HHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHHHHcccH
Confidence            4567889999999999999988754 777888888889999999999866554321   011111111111222345555


Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 018743           82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV  127 (351)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  127 (351)
                      ++|+..++-..    +.+..+...-...+.+.|++++|+.+|+.+.
T Consensus        96 Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~  137 (652)
T KOG2376|consen   96 DEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLA  137 (652)
T ss_pred             HHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            55555555111    1122233334444555556666665555553

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.1e-08  Score=81.23  Aligned_cols=269  Identities=10%  Similarity=0.025  Sum_probs=204.0

Q ss_pred             CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH
Q 018743           25 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY  103 (351)
Q Consensus        25 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  103 (351)
                      .+-|+.....+..++...|+.++|+..|++....   .|+.. ......-.+.+.|+.+....+...+.... ..+...|
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w  303 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW  303 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence            4558889999999999999999999999998763   44432 22222233557788888888877776543 3355556


Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018743          104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR  183 (351)
Q Consensus       104 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  183 (351)
                      ..-+.......++..|+.+-++.++..  +.+...+-.-...+...|++++|.-.|+...... +.+...|.-|+.+|..
T Consensus       304 fV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA  380 (564)
T KOG1174|consen  304 FVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLA  380 (564)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHh
Confidence            656666777899999999999998764  5556666666688889999999999999887643 5678899999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHhHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHhHH
Q 018743          184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVI-ETFG-KAGHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMKV  260 (351)
Q Consensus       184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a  260 (351)
                      .|.+.+|..+-+..... .+.+..+...+. ..+. ...--++|.++++.-...  .|+ ......+...+...|..+.+
T Consensus       381 ~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~  457 (564)
T KOG1174|consen  381 QKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDI  457 (564)
T ss_pred             hchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchH
Confidence            99999998877665443 222455554442 2222 223457888888887765  454 45677888889999999999


Q ss_pred             HHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      ..+++.....  .||....+.|.+.+...+.+.+|.+.|......
T Consensus       458 i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  458 IKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            9999987765  568889999999999999999999999998875

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=1.7e-08  Score=82.76  Aligned_cols=332  Identities=13%  Similarity=0.073  Sum_probs=229.6

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCH
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRF   81 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~   81 (351)
                      +.+..|+++.|+..|-+.....+. |...|..-..+|...|++++|++=-.+-.+.   .|+ ...|+....++.-.|++
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcccH
Confidence            456789999999999999988766 8888988999999999999998776666553   555 45799999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC----------------------------------------------
Q 018743           82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK----------------------------------------------  115 (351)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------------------------------  115 (351)
                      ++|+.-|.+-.+.. +.|...++.+..++.....                                              
T Consensus        87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~  165 (539)
T KOG0548|consen   87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY  165 (539)
T ss_pred             HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence            99999999988775 5566667766666521100                                              


Q ss_pred             --hHHHHHHHHHHHhcC--------------CCCC------------C----------HhHHHHHHHHHhcCCCHHHHHH
Q 018743          116 --FEEMESSFSAMVESG--------------GCHP------------D----------IFTLNSMISAYGNSGNIEKMEK  157 (351)
Q Consensus       116 --~~~a~~~~~~~~~~~--------------~~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~  157 (351)
                        .....+..-.+....              +..|            |          ..-...+.++..+..+++.+++
T Consensus       166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q  245 (539)
T KOG0548|consen  166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ  245 (539)
T ss_pred             cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence              000000000000000              0011            0          0113445566666777888888


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH-------HHHHHhcCCHHHHHHHHH
Q 018743          158 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV-------IETFGKAGHIEKMEEYFK  230 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~  230 (351)
                      .+.......  -+..-++....+|...|.+..+...-....+.|.. ...-|+.+       ..++.+.++++.++..|.
T Consensus       246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~  322 (539)
T KOG0548|consen  246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ  322 (539)
T ss_pred             HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence            888777654  45556677777888888887777766665554432 22333333       335556677888888888


Q ss_pred             HHHHcCCCccHHHH-------------------------HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743          231 KMKHRGMKPNSITY-------------------------CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA  285 (351)
Q Consensus       231 ~~~~~~~~~~~~~~-------------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  285 (351)
                      +.......|+..+=                         ..-...+.+.|++..|...|.++++..+. |...|....-+
T Consensus       323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac  401 (539)
T KOG0548|consen  323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAAC  401 (539)
T ss_pred             HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHH
Confidence            76654434333221                         11234566789999999999999988866 88899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       286 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      |.+.|.+..|++-.+..++.. ++....|..-..++....+++.|.+.|++.++.+|..
T Consensus       402 ~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~  459 (539)
T KOG0548|consen  402 YLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN  459 (539)
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            999999999999888888762 3345566666777888889999999999998888654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.35  E-value=1.8e-08  Score=84.00  Aligned_cols=295  Identities=10%  Similarity=0.036  Sum_probs=180.9

Q ss_pred             cCCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHH---HHHHHHhcCC
Q 018743            6 KCKQPEQASLLFEVMLSDGL-KPS-VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI---LIKSCTKFHR   80 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~   80 (351)
                      ..|+.+.+...+....+... .++ ..........+...|++++|.+.+++..+..  +.+...+..   ........+.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~~~~~~~~~   95 (355)
T cd05804          18 LGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAFGLGDFSGM   95 (355)
T ss_pred             hcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHHHhcccccC
Confidence            44667776666666555432 222 2233334556778899999999999988742  334444442   1111223455


Q ss_pred             HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 018743           81 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN  160 (351)
Q Consensus        81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  160 (351)
                      ...+.+.++... ...+........+...+...|++++|...+++..+..  +.+...+..+..++...|++++|..+++
T Consensus        96 ~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~  172 (355)
T cd05804          96 RDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFME  172 (355)
T ss_pred             chhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            555665555421 1222334455566778899999999999999998874  5667788889999999999999999999


Q ss_pred             HHHhcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHhH-H--HHHHHHHhcCCHHHHHHH--HHH
Q 018743          161 EFNLMGV-KADI--QTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-FPTVVTY-N--IVIETFGKAGHIEKMEEY--FKK  231 (351)
Q Consensus       161 ~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~~~  231 (351)
                      +...... .++.  ..+..+...+...|++++|..+++....... .+..... +  .++.-+...|..+.+.++  +..
T Consensus       173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~  252 (355)
T cd05804         173 SWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLAD  252 (355)
T ss_pred             hhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            9876432 1232  3455788889999999999999999864432 1122211 1  223333334433333222  111


Q ss_pred             HHHcCCC--ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc------c--CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743          232 MKHRGMK--PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI------L--DTPFFNCIISAYGQAGDVEKMGELFLT  301 (351)
Q Consensus       232 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~g~~~~a~~~~~~  301 (351)
                      ......+  ...........++...|+.+.|...++.+......      .  .....-...-++...|+.++|.+.+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~  332 (355)
T cd05804         253 YAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGP  332 (355)
T ss_pred             HHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            1111111  11122235666778889999999999987653221      0  111222223356688999999999998


Q ss_pred             HHhc
Q 018743          302 MKER  305 (351)
Q Consensus       302 ~~~~  305 (351)
                      ....
T Consensus       333 al~~  336 (355)
T cd05804         333 VRDD  336 (355)
T ss_pred             HHHH
Confidence            7753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.34  E-value=3.8e-08  Score=82.58  Aligned_cols=168  Identities=10%  Similarity=0.030  Sum_probs=98.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCc
Q 018743          174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT---VVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-----------MKP  239 (351)
Q Consensus       174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~  239 (351)
                      |..+...|-..|+.+.|..+|++..+...+.-   ..+|..-...-.++.+++.|++++++....-           .++
T Consensus       390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv  469 (835)
T KOG2047|consen  390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV  469 (835)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence            45566677777888888888877766533211   2344444555556677777777777654321           111


Q ss_pred             ------cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-H
Q 018743          240 ------NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN-I  312 (351)
Q Consensus       240 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~  312 (351)
                            +...|...+...-..|-++....+++++.+..+. ++.+.......+-.+.-++++.++|++-+..-..|+. .
T Consensus       470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d  548 (835)
T KOG2047|consen  470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD  548 (835)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence                  1233455555555667777778888887776655 4444334444444555566777776665544333443 3


Q ss_pred             HHHHHHHHHHH---cCCHHHHHHHHHHHHHhcc
Q 018743          313 TFATMIQAYNA---LGMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       313 ~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~  342 (351)
                      .|+..+.-+.+   .-+.+.|+.+|+++++.-|
T Consensus       549 iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  549 IWNTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            55655554443   2257777777777777443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.33  E-value=5.2e-10  Score=88.58  Aligned_cols=151  Identities=17%  Similarity=0.164  Sum_probs=61.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCC
Q 018743          181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK----AGL  256 (351)
Q Consensus       181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~  256 (351)
                      +...|++++|++++...      .+.......+..+.+.++++.|.+.++.|.+.+  .| .+...+..++..    .+.
T Consensus       112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~  182 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK  182 (290)
T ss_dssp             HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred             HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence            33444555544444321      133333444444555555555555555544321  11 222223322221    123


Q ss_pred             HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 018743          257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT-EAAQNLEN  335 (351)
Q Consensus       257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~  335 (351)
                      +.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+ +-++.++..++.+....|+. +.+.++++
T Consensus       183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            44455555554332 22344444445555555555555555555444332 12334444444444444444 33444444


Q ss_pred             HHHHhcc
Q 018743          336 KMIAMKE  342 (351)
Q Consensus       336 ~~~~~~~  342 (351)
                      ++....|
T Consensus       261 qL~~~~p  267 (290)
T PF04733_consen  261 QLKQSNP  267 (290)
T ss_dssp             HCHHHTT
T ss_pred             HHHHhCC
Confidence            4444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.31  E-value=7.3e-08  Score=74.93  Aligned_cols=307  Identities=12%  Similarity=0.038  Sum_probs=221.9

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHH-H
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV-YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN-T  105 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~  105 (351)
                      ++.-.--+...+...|++.+|+.-|....+.   .|+. .++-.-...|...|+...|+.-+.+..+.  .||-..-. .
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~---dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ  111 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEG---DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ  111 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC---CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence            4445556777888899999999999988862   3332 23333345688889988888888888775  56643222 2


Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhcCCCCC-CHhH------------HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHH
Q 018743          106 IIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFT------------LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ  172 (351)
Q Consensus       106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  172 (351)
                      -...+.+.|.+++|..-|+.+++...... ....            ....+..+...||...|+.....+++.. +.+..
T Consensus       112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~  190 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS  190 (504)
T ss_pred             hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence            34567789999999999999987641100 1111            2223445677899999999999998764 67888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH----HH---
Q 018743          173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT----YC---  245 (351)
Q Consensus       173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~---  245 (351)
                      .+..-..+|...|++..|+.-++...+.... ++.++-.+-..+...|+.+.++...++.++.  .||...    |-   
T Consensus       191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk  267 (504)
T KOG0624|consen  191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK  267 (504)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence            8889999999999999999988887665433 5666667778888999999999999888875  444322    21   


Q ss_pred             HHH------HHHHhcCCHhHHHHHHHHhhhcCCccCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHH
Q 018743          246 SLV------SAYSKAGLIMKVDSILRQVENSDVILDT---PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFA  315 (351)
Q Consensus       246 ~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~  315 (351)
                      .+.      ......+++.++..-.+...+..+....   ..+..+-.++...|++.+|++...+..+.  .|| ..++-
T Consensus       268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~  345 (504)
T KOG0624|consen  268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLC  345 (504)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHH
Confidence            111      2234557788888888877776554222   23455667788889999999999999874  444 77888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743          316 TMIQAYNALGMTEAAQNLENKMIAMKENSG  345 (351)
Q Consensus       316 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  345 (351)
                      --..+|.-...+|.|+.-|+++.+.++.+.
T Consensus       346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn~  375 (504)
T KOG0624|consen  346 DRAEAYLGDEMYDDAIHDYEKALELNESNT  375 (504)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence            888899999999999999999998887654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.29  E-value=1.4e-07  Score=79.26  Aligned_cols=222  Identities=9%  Similarity=0.119  Sum_probs=151.8

Q ss_pred             CChHHHHHHHHHHHhcCCCCCC------HhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhc
Q 018743          114 KKFEEMESSFSAMVESGGCHPD------IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---IQTLNILTKSYGRA  184 (351)
Q Consensus       114 ~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~  184 (351)
                      |+..+-...+.++++.  +.|.      ...|..+...|-..|+++.|..+|++......+.-   ..+|.....+-.+.
T Consensus       361 ~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh  438 (835)
T KOG2047|consen  361 GNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH  438 (835)
T ss_pred             CChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence            4555666666666554  2332      12478888999999999999999999877543322   35677777777888


Q ss_pred             CCHHHHHHHHHHHHHcCCC-----------------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 018743          185 GMYDKMRSVMDFMQKRFFF-----------------PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL  247 (351)
Q Consensus       185 ~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  247 (351)
                      .+++.|.++++......-.                 .+...|+..+...-..|-++....+|+++.+..+. ++......
T Consensus       439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny  517 (835)
T KOG2047|consen  439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY  517 (835)
T ss_pred             hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            8999999988876432111                 13455667777777788999999999999987644 44444444


Q ss_pred             HHHHHhcCCHhHHHHHHHHhhhcCCccCH-HhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHH
Q 018743          248 VSAYSKAGLIMKVDSILRQVENSDVILDT-PFFNCIISAYGQ---AGDVEKMGELFLTMKERHCVPDNI--TFATMIQAY  321 (351)
Q Consensus       248 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~  321 (351)
                      ...+-...-++++.+++++-...-..|+. ..|+..+.-+.+   ....+.|..+|+++.+ |++|...  .|......=
T Consensus       518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE  596 (835)
T KOG2047|consen  518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE  596 (835)
T ss_pred             HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence            55556677788999999887766545554 467777665554   2358999999999998 6776543  222222333


Q ss_pred             HHcCCHHHHHHHHHHHHH
Q 018743          322 NALGMTEAAQNLENKMIA  339 (351)
Q Consensus       322 ~~~g~~~~A~~~~~~~~~  339 (351)
                      .+.|....|+++++++..
T Consensus       597 Ee~GLar~amsiyerat~  614 (835)
T KOG2047|consen  597 EEHGLARHAMSIYERATS  614 (835)
T ss_pred             HHhhHHHHHHHHHHHHHh
Confidence            356888888888887644

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.28  E-value=1.1e-07  Score=89.24  Aligned_cols=339  Identities=8%  Similarity=-0.027  Sum_probs=212.1

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCC-----CccH--HHHHHHHHHHHhc
Q 018743            6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC-----KPDV--YTYSILIKSCTKF   78 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~--~~~~~l~~~~~~~   78 (351)
                      ..|+++.+..+++.+.......++.........+...|++++|...+.........     .+..  .....+...+...
T Consensus       386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  465 (903)
T PRK04841        386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND  465 (903)
T ss_pred             hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence            34566666666655422211112333344555666789999999888876542110     1111  1222233445678


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhhcCChHHHHHHHHHHHhcCC----CCCCHhHHHHHHHHHhcCC
Q 018743           79 HRFDLIEKILAEMSYLGIECSA----VTYNTIIDGYGKAKKFEEMESSFSAMVESGG----CHPDIFTLNSMISAYGNSG  150 (351)
Q Consensus        79 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~  150 (351)
                      |+++.|...+++....-...+.    ...+.+...+...|++++|...+++......    ......++..+...+...|
T Consensus       466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G  545 (903)
T PRK04841        466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG  545 (903)
T ss_pred             CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence            9999999999987763211121    2345566677889999999999988764321    1111234555667788899


Q ss_pred             CHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHhHHHHHHHHHhc
Q 018743          151 NIEKMEKWYNEFNLM----GVK--A-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKR----FFFPTVVTYNIVIETFGKA  219 (351)
Q Consensus       151 ~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~  219 (351)
                      ++++|...+++....    +..  + ....+..+...+...|++++|...+.+....    +.......+..+.......
T Consensus       546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~  625 (903)
T PRK04841        546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR  625 (903)
T ss_pred             CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence            999999998876542    211  1 2233455666777889999999998876542    1111234445566777889


Q ss_pred             CCHHHHHHHHHHHHHcC--CCccHH--HH--HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCH---HhHHHHHHHHHhcC
Q 018743          220 GHIEKMEEYFKKMKHRG--MKPNSI--TY--CSLVSAYSKAGLIMKVDSILRQVENSDVILDT---PFFNCIISAYGQAG  290 (351)
Q Consensus       220 ~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g  290 (351)
                      |+++.|...+.......  ......  ..  ...+..+...|+.+.|...+............   ..+..+..++...|
T Consensus       626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g  705 (903)
T PRK04841        626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG  705 (903)
T ss_pred             CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence            99999999988875421  111111  10  11223445678999999998776543221111   11345677888999


Q ss_pred             CHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          291 DVEKMGELFLTMKER----HCVPD-NITFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       291 ~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      +.++|...+++....    |..++ ..+...+..++.+.|+.++|...+.++++.....
T Consensus       706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~  764 (903)
T PRK04841        706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT  764 (903)
T ss_pred             CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence            999999999987643    32222 3456677788999999999999999998876543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.27  E-value=1.2e-07  Score=74.17  Aligned_cols=124  Identities=6%  Similarity=0.072  Sum_probs=83.2

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 018743          218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE  297 (351)
Q Consensus       218 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  297 (351)
                      -..++++++..+..+...- ..|....-.+.++.+..|.+.+|+++|-.+....++-+......|.++|.+.+..+.|++
T Consensus       371 L~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~  449 (557)
T KOG3785|consen  371 LSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD  449 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH
Confidence            3344555555555555442 223333345778888889999999999888877766333334556789999999999977


Q ss_pred             HHHHHHhcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743          298 LFLTMKERHCVPDNITFA-TMIQAYNALGMTEAAQNLENKMIAMKENSG  345 (351)
Q Consensus       298 ~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  345 (351)
                      ++-++..   +.+..+.. .+.+-|.+.+.+=-|.+.|+.+...+|.|.
T Consensus       450 ~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE  495 (557)
T KOG3785|consen  450 MMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE  495 (557)
T ss_pred             HHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence            7655432   33333433 344568888888888888888888887764

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.24  E-value=6.8e-09  Score=85.80  Aligned_cols=95  Identities=13%  Similarity=0.088  Sum_probs=49.3

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHH
Q 018743          169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN-SITYCSL  247 (351)
Q Consensus       169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l  247 (351)
                      +|..+...|.-.|--.|++++|...|+......+. |..+||.|...++...+.++|+..|.+.++.  .|+ +.....|
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNl  504 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNL  504 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhh
Confidence            44445555555555555555555555555544322 4555555555555555555555555555554  332 2333344


Q ss_pred             HHHHHhcCCHhHHHHHHHH
Q 018743          248 VSAYSKAGLIMKVDSILRQ  266 (351)
Q Consensus       248 ~~~~~~~g~~~~a~~~~~~  266 (351)
                      .-+|...|.+.+|.+.|-.
T Consensus       505 gIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  505 GISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             hhhhhhhhhHHHHHHHHHH
Confidence            4455555555555555544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.23  E-value=3.2e-09  Score=87.69  Aligned_cols=225  Identities=13%  Similarity=0.107  Sum_probs=177.7

Q ss_pred             HHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018743          108 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY  187 (351)
Q Consensus       108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  187 (351)
                      .-+.+.|++.+|.-.|+..++..  |-+...|..|.......++-..|+..+.+..+.. +.+....-.|.-.|...|.-
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q  369 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ  369 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence            34668899999999999998874  6678899999999999999999999999998865 55677888888899999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHhHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HcCCCccHHHHHHHHHHHHhcC
Q 018743          188 DKMRSVMDFMQKRFFFPTVVTYNIVI-----------ETFGKAGHIEKMEEYFKKMK-HRGMKPNSITYCSLVSAYSKAG  255 (351)
Q Consensus       188 ~~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g  255 (351)
                      ..|...++......++     |..+.           ..+.....+....++|-++. ..+..+|+.....|.-.|.-.|
T Consensus       370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~  444 (579)
T KOG1125|consen  370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG  444 (579)
T ss_pred             HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence            9999999987664321     00000           11112222344445555544 4444478888888888889999


Q ss_pred             CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 018743          256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLE  334 (351)
Q Consensus       256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~  334 (351)
                      ++++|.+.|+.+....+. |..+||.|...++...+.++|+..|.++.+.  .|+ +.....|.-.|...|.+++|.+.|
T Consensus       445 efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl  521 (579)
T KOG1125|consen  445 EFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL  521 (579)
T ss_pred             HHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence            999999999999988877 8999999999999999999999999999984  666 456777888999999999999999


Q ss_pred             HHHHHhccc
Q 018743          335 NKMIAMKEN  343 (351)
Q Consensus       335 ~~~~~~~~~  343 (351)
                      =.++.+...
T Consensus       522 L~AL~mq~k  530 (579)
T KOG1125|consen  522 LEALSMQRK  530 (579)
T ss_pred             HHHHHhhhc
Confidence            888877665

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.23  E-value=1.3e-08  Score=86.44  Aligned_cols=226  Identities=9%  Similarity=0.026  Sum_probs=186.9

Q ss_pred             CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018743           96 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN  175 (351)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  175 (351)
                      .+|-...-..+...+...|-..+|..+|++..          .|...+.+|...|+..+|..+..+..+  -+|+...|.
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc  461 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYC  461 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHH
Confidence            45555555677888899999999999999872          477788999999999999999988877  378999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 018743          176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG  255 (351)
Q Consensus       176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  255 (351)
                      .+.+......-+++|.++.+....+       .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.+
T Consensus       462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle  533 (777)
T KOG1128|consen  462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE  533 (777)
T ss_pred             HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence            9999988888899999998875443       11122223344789999999999877764 567788999999999999


Q ss_pred             CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 018743          256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN  335 (351)
Q Consensus       256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  335 (351)
                      +++.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.+++|++.++
T Consensus       534 k~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~  611 (777)
T KOG1128|consen  534 KEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH  611 (777)
T ss_pred             hhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence            999999999999888766 78899999999999999999999999999876 4467788888888999999999999999


Q ss_pred             HHHHhccc
Q 018743          336 KMIAMKEN  343 (351)
Q Consensus       336 ~~~~~~~~  343 (351)
                      ++......
T Consensus       612 rll~~~~~  619 (777)
T KOG1128|consen  612 RLLDLRKK  619 (777)
T ss_pred             HHHHhhhh
Confidence            99776543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.21  E-value=5.3e-08  Score=88.46  Aligned_cols=241  Identities=8%  Similarity=0.059  Sum_probs=174.1

Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743           16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD---VYTYSILIKSCTKFHRFDLIEKILAEMS   92 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~   92 (351)
                      =|+++....+. +...|-..|..+.+.++.+.|.++.++....-++.-.   ...|.++++.-...|.-+...++|+++.
T Consensus      1446 DferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred             HHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence            34455544333 6777888888888889999999998888763222111   2457777777777778888888888888


Q ss_pred             HcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC--C
Q 018743           93 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA--D  170 (351)
Q Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~  170 (351)
                      +..  ..-..|..|...|.+.+.+++|.++++.|.++-  ......|...+..+.+.++-+.|..++.+..+.- +.  .
T Consensus      1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eH 1599 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF--GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEH 1599 (1710)
T ss_pred             Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhh
Confidence            763  234567788888888999999999999998874  3566778888888888888888888888876642 22  3


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH--HHHHHHH
Q 018743          171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS--ITYCSLV  248 (351)
Q Consensus       171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~  248 (351)
                      .....-.+..-.+.|+.+.+..+|+......++ -...|+..++.-.++|+.+.+..+|++....+++|-.  ..|...+
T Consensus      1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred             HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence            445566667777888888888888887776443 5677888888888888888888888888888776643  3455555


Q ss_pred             HHHHhcCCHhHHHHH
Q 018743          249 SAYSKAGLIMKVDSI  263 (351)
Q Consensus       249 ~~~~~~g~~~~a~~~  263 (351)
                      ..-...|+-..++.+
T Consensus      1679 eyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYV 1693 (1710)
T ss_pred             HHHHhcCchhhHHHH
Confidence            544455555444443

>PLN02789 farnesyltranstransferase

Probab=99.20  E-value=1.6e-07  Score=75.66  Aligned_cols=213  Identities=8%  Similarity=-0.029  Sum_probs=113.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcC-ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH
Q 018743           68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAY  146 (351)
Q Consensus        68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  146 (351)
                      +..+-..+...++.++|+.+.+++++.. |-+..+|+....++...| ++++++..++++.+..  +.+..+|+.....+
T Consensus        40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l  116 (320)
T PLN02789         40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHH
Confidence            4444444555667777777777776654 334555555555555555 4677777777776653  44445565554444


Q ss_pred             hcCCCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CC
Q 018743          147 GNSGNI--EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA---GH  221 (351)
Q Consensus       147 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~  221 (351)
                      .+.|+.  ++++.+++.+.+.. +-+..+|+....++...|+++++++.++++.+.++. +...|+.....+.+.   |.
T Consensus       117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~  194 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG  194 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence            445542  45566666666544 445566666666666666666666666666665444 445555544444332   11


Q ss_pred             H----HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHH
Q 018743          222 I----EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA----GLIMKVDSILRQVENSDVILDTPFFNCIISAYG  287 (351)
Q Consensus       222 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  287 (351)
                      .    ++.+....+++... +-|...|+.+...+...    +...+|...+.+..+.++. +...+..|+..|+
T Consensus       195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~  266 (320)
T PLN02789        195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC  266 (320)
T ss_pred             ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence            1    34444444444442 33445555555555442    2233455555554443332 4444445555444

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.19  E-value=8.3e-08  Score=87.27  Aligned_cols=244  Identities=11%  Similarity=0.100  Sum_probs=190.5

Q ss_pred             HHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC---HhHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 018743           88 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD---IFTLNSMISAYGNSGNIEKMEKWYNEFNL  164 (351)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  164 (351)
                      |+++.... |-+...|...|......++.++|.+++++++..-++.-.   ...|.++++.-..-|.-+...++|+++.+
T Consensus      1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred             HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence            33344332 446678899999999999999999999999775322211   23688888887788888999999999887


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---H
Q 018743          165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN---S  241 (351)
Q Consensus       165 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~  241 (351)
                      ..  ..-..|..|...|.+.+.+++|.++++.|.+..- -....|...+..+.+.++-+.|..++.+..+.  -|.   .
T Consensus      1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv 1600 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHV 1600 (1710)
T ss_pred             hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhH
Confidence            43  3345788999999999999999999999988744 47788999999999999999999999998875  333   3


Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHH
Q 018743          242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN--ITFATMIQ  319 (351)
Q Consensus       242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~  319 (351)
                      ......+..-.+.|+.+++..+|+......++ -...|+.+++.-.++|+.+.+..+|++.+..++.|-.  ..|...+.
T Consensus      1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred             HHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence            44556666677899999999999999987766 6789999999999999999999999999998877653  35556665


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q 018743          320 AYNALGMTEAAQNLENKMI  338 (351)
Q Consensus       320 ~~~~~g~~~~A~~~~~~~~  338 (351)
                      .=...|+-+.+..+=.++.
T Consensus      1680 yEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred             HHHhcCchhhHHHHHHHHH
Confidence            5555677555444444433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=5.1e-08  Score=74.32  Aligned_cols=283  Identities=10%  Similarity=-0.010  Sum_probs=147.3

Q ss_pred             ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHH-HHHHHHhcCCHHH
Q 018743            5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI-LIKSCTKFHRFDL   83 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~   83 (351)
                      .+..+++.|++++..-.++.++ +...+..+..+|....++..|-+.++++...   .|...-|.. -.+.+.+.+.+..
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~AD   96 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYAD   96 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHH
Confidence            4566788888888887777544 7788888889999999999999999998763   455544432 2344566777777


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHH--HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 018743           84 IEKILAEMSYLGIECSAVTYNTI--IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE  161 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  161 (351)
                      |+++...|...   ++...-..-  .......+++..+..++++....    .+..+.+.......+.|+++.|.+-|+.
T Consensus        97 ALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqyEaAvqkFqa  169 (459)
T KOG4340|consen   97 ALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQYEAAVQKFQA  169 (459)
T ss_pred             HHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----CccchhccchheeeccccHHHHHHHHHH
Confidence            77777766532   111111111  11122345555555555544211    2333333333444555666666666655


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------CH---------------HhHHHHH
Q 018743          162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP-------------TV---------------VTYNIVI  213 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~~l~  213 (351)
                      ..+-+--.....|+.-+ +..+.++++.|.+...++.++|++.             |+               ..+|.-.
T Consensus       170 AlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa  248 (459)
T KOG4340|consen  170 ALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA  248 (459)
T ss_pred             HHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence            55433222233344332 2334455666666665555544321             11               1122222


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCH
Q 018743          214 ETFGKAGHIEKMEEYFKKMKHR-GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV  292 (351)
Q Consensus       214 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  292 (351)
                      ..+.+.++++.|.+.+.+|... ....|+.|...+.-.- ..+++.....-++-+...++. ...+|..++-.||+..-+
T Consensus       249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf  326 (459)
T KOG4340|consen  249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYF  326 (459)
T ss_pred             hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHH
Confidence            2234456666666665555422 1233445544433221 123344444444444444443 344555555566666666


Q ss_pred             HHHHHHHHH
Q 018743          293 EKMGELFLT  301 (351)
Q Consensus       293 ~~a~~~~~~  301 (351)
                      +.|-+++.+
T Consensus       327 ~lAADvLAE  335 (459)
T KOG4340|consen  327 DLAADVLAE  335 (459)
T ss_pred             hHHHHHHhh
Confidence            666555543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.17  E-value=1.7e-07  Score=73.36  Aligned_cols=319  Identities=12%  Similarity=0.067  Sum_probs=166.4

Q ss_pred             ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHH
Q 018743            5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI   84 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   84 (351)
                      ....++..|+.+++.-...+-.-...+-.-+..++.+.|++++|+..+..+...  ..|+...+..|.-+..-.|.+.+|
T Consensus        33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHH
Confidence            445677777777776554332212222233455677788888888888877652  245555555555555555555555


Q ss_pred             HHHHHHHHHc--------------C-----------CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHH
Q 018743           85 EKILAEMSYL--------------G-----------IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL  139 (351)
Q Consensus        85 ~~~~~~~~~~--------------~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  139 (351)
                      ..+-....+.              +           +..+..--.+|.......-.+.+|++++.++...   .|+-...
T Consensus       111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~al  187 (557)
T KOG3785|consen  111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIAL  187 (557)
T ss_pred             HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---Chhhhhh
Confidence            5544332111              1           0011111223344444455678888888888765   3454455


Q ss_pred             HHHH-HHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CCH-----------------------------
Q 018743          140 NSMI-SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA--GMY-----------------------------  187 (351)
Q Consensus       140 ~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~-----------------------------  187 (351)
                      |..+ -+|.+..-++-+.+++.-..+. ++.++...+..+....+.  |+.                             
T Consensus       188 NVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv  266 (557)
T KOG3785|consen  188 NVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV  266 (557)
T ss_pred             HHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence            5433 4556677677777777666543 233344444333322222  111                             


Q ss_pred             ----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH---------------
Q 018743          188 ----DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV---------------  248 (351)
Q Consensus       188 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---------------  248 (351)
                          +.|++++-.+.+.  -  +..--.++-.|.+.++..+|..+.+++...  .|-......++               
T Consensus       267 FrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlK  340 (557)
T KOG3785|consen  267 FRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLK  340 (557)
T ss_pred             EeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence                1122222111111  1  112223444567778888887776664321  22222221111               


Q ss_pred             --------------------------HHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743          249 --------------------------SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM  302 (351)
Q Consensus       249 --------------------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  302 (351)
                                                ..+.-..++++.+..+..+...-.. |-..--.+.++.+..|++.+|.++|-+.
T Consensus       341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~i  419 (557)
T KOG3785|consen  341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRI  419 (557)
T ss_pred             HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence                                      1111222333333333333332222 2222234677888899999999999888


Q ss_pred             HhcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHH
Q 018743          303 KERHCVPDNITF-ATMIQAYNALGMTEAAQNLENKM  337 (351)
Q Consensus       303 ~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~  337 (351)
                      ....++ |..+| ..|.++|.+.++++.|..++-++
T Consensus       420 s~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~  454 (557)
T KOG3785|consen  420 SGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT  454 (557)
T ss_pred             cChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence            765555 44455 46668899999999988776543

>PLN02789 farnesyltranstransferase

Probab=99.16  E-value=2.3e-07  Score=74.67  Aligned_cols=216  Identities=6%  Similarity=-0.066  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743           30 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIID  108 (351)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (351)
                      .++..+-..+...++.++|+.++.++.+..  +-+..+|+....++...+ ++++++..++++.+.. +.+..+|+....
T Consensus        38 ~a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~  114 (320)
T PLN02789         38 EAMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRW  114 (320)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHH
Confidence            355555566677788889999999888742  334445666666666666 5788888888888776 456667776655


Q ss_pred             HHhhcCCh--HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--
Q 018743          109 GYGKAKKF--EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA--  184 (351)
Q Consensus       109 ~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  184 (351)
                      .+.+.|+.  ++++.+++++.+..  +.+..+|+...-++...|+++++++.++++++.+ +.+...|+.....+.+.  
T Consensus       115 ~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~  191 (320)
T PLN02789        115 LAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPL  191 (320)
T ss_pred             HHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccc
Confidence            56666653  67788888887764  6677888888888888888999999999988876 44556666665555544  


Q ss_pred             -CCH----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 018743          185 -GMY----DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA----GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK  253 (351)
Q Consensus       185 -~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  253 (351)
                       |..    +........+....+. +...|+.+...+...    ++..+|.+.+.+....+ +.+......|+..|+.
T Consensus       192 l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        192 LGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             cccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence             222    3555666566655443 667777777777663    34456777777766643 4456667777777764

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.15  E-value=1.9e-06  Score=71.35  Aligned_cols=134  Identities=12%  Similarity=0.097  Sum_probs=102.6

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743          207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA  285 (351)
Q Consensus       207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  285 (351)
                      .+|...+....+..-+..|..+|.++.+.+..+ +....++++..++ .++..-|.++|+.-.+.-.. ++......+..
T Consensus       367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d-~p~yv~~Yldf  444 (656)
T KOG1914|consen  367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD-SPEYVLKYLDF  444 (656)
T ss_pred             eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence            346666777777778888999999998887666 6677778887665 47888899999876554322 44555677888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743          286 YGQAGDVEKMGELFLTMKERHCVPD--NITFATMIQAYNALGMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       286 ~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  342 (351)
                      +...++-..|..+|++....++.|+  ...|..++.-=..-|+...+.++-+++...-+
T Consensus       445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            8888999999999999988766655  45888998888888999999888888766554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.15  E-value=2.3e-06  Score=72.29  Aligned_cols=320  Identities=12%  Similarity=0.075  Sum_probs=209.7

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 018743            6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE   85 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   85 (351)
                      .-+++++|+..|......+.. |...|.-+.-.-++.|+++...+...+..+..  +.....|..+..+..-.|+...|.
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~  163 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMAL  163 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            347899999999999998766 88899888888888999998888888887632  334556888888888899999999


Q ss_pred             HHHHHHHHcC-CCCCHhHHHHHH------HHHhhcCChHHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHhcCCCHHHHHH
Q 018743           86 KILAEMSYLG-IECSAVTYNTII------DGYGKAKKFEEMESSFSAMVESGGCHPDIF-TLNSMISAYGNSGNIEKMEK  157 (351)
Q Consensus        86 ~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~  157 (351)
                      .++++..+.. -.|+...+....      ....+.|..++|.+.+......   ..|.. .-..-...+.+.+++++|..
T Consensus       164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~  240 (700)
T KOG1156|consen  164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVK  240 (700)
T ss_pred             HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence            9999987765 245655554332      2345677888888877765332   22322 23345567788899999999


Q ss_pred             HHHHHHhcCCCCCHHHH-HHHHHHHHhcCCHHHHH-HHHHHHHHc----------------------------------C
Q 018743          158 WYNEFNLMGVKADIQTL-NILTKSYGRAGMYDKMR-SVMDFMQKR----------------------------------F  201 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~-~~~~~~~~~----------------------------------~  201 (351)
                      ++..++...  ||..-| ..+..++.+..+.-++. .+|....+.                                  |
T Consensus       241 ~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg  318 (700)
T KOG1156|consen  241 VYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG  318 (700)
T ss_pred             HHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence            999988754  554444 34444443222222222 444443332                                  2


Q ss_pred             CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH---c---C------------CCccHHHH--HHHHHHHHhcCCHhHHH
Q 018743          202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH---R---G------------MKPNSITY--CSLVSAYSKAGLIMKVD  261 (351)
Q Consensus       202 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~---~------------~~~~~~~~--~~l~~~~~~~g~~~~a~  261 (351)
                      ++   .++..+...|-   ++..+- +++++..   .   |            -+|+...|  -.++..+-..|+++.|.
T Consensus       319 ~p---~vf~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~  391 (700)
T KOG1156|consen  319 VP---SVFKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL  391 (700)
T ss_pred             CC---chhhhhHHHHh---chhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence            21   11222222221   111111 3333221   1   1            14555444  45778888999999999


Q ss_pred             HHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743          262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK  341 (351)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  341 (351)
                      ..++...++.+. -+..|..=.+.+...|++++|..++++..+.+ .||...-.--+.-..+.++.++|.++.....+.+
T Consensus       392 ~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  392 EYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG  469 (700)
T ss_pred             HHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence            999999887443 34455556688999999999999999998764 2354433355566678899999998888776655


Q ss_pred             c
Q 018743          342 E  342 (351)
Q Consensus       342 ~  342 (351)
                      .
T Consensus       470 ~  470 (700)
T KOG1156|consen  470 F  470 (700)
T ss_pred             c
Confidence            3

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.13  E-value=2.5e-07  Score=79.33  Aligned_cols=287  Identities=13%  Similarity=0.026  Sum_probs=191.4

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018743           10 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA   89 (351)
Q Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   89 (351)
                      ..++++.+++..+.++. |+.+...+.--|+..++++.|++...+..+. +-..+...|..+.-.+...+++..|+.+.+
T Consensus       460 h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-~~~~~~~~whLLALvlSa~kr~~~Al~vvd  537 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALAL-NRGDSAKAWHLLALVLSAQKRLKEALDVVD  537 (799)
T ss_pred             HHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            45788889998888766 5566556666788889999999999998884 235678889999999999999999999988


Q ss_pred             HHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC--------------------CC-------CCCHhHHHHH
Q 018743           90 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--------------------GC-------HPDIFTLNSM  142 (351)
Q Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~-------~~~~~~~~~l  142 (351)
                      .....- +.|......=+..-..-++.++++.....+...-                    |.       .....++..+
T Consensus       538 ~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l  616 (799)
T KOG4162|consen  538 AALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL  616 (799)
T ss_pred             HHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence            776541 1121111111222222445454444433332110                    00       0011122222


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 018743          143 ISAYGNSGNIEKMEKWYNEFNLMGVK--AD------IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE  214 (351)
Q Consensus       143 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  214 (351)
                      .......+........   +....+.  |+      ...+......+.+.+..++|...+.+..... +.....|.....
T Consensus       617 s~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~  692 (799)
T KOG4162|consen  617 SSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGL  692 (799)
T ss_pred             HHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhH
Confidence            2111100000000000   1111111  12      1234456677788889999988887776653 336677777778


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHH--HHHHhhhcCCccCHHhHHHHHHHHHhcCCH
Q 018743          215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS--ILRQVENSDVILDTPFFNCIISAYGQAGDV  292 (351)
Q Consensus       215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  292 (351)
                      .+...|..++|...|......+ |-++....++...+.+.|+..-|..  ++..+.+.++. +...|..+...+.+.|+.
T Consensus       693 ~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~  770 (799)
T KOG4162|consen  693 LLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDS  770 (799)
T ss_pred             HHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccch
Confidence            8889999999999999988764 4467788999999999999888888  99999999887 899999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 018743          293 EKMGELFLTMKER  305 (351)
Q Consensus       293 ~~a~~~~~~~~~~  305 (351)
                      ++|.+.|....+.
T Consensus       771 ~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  771 KQAAECFQAALQL  783 (799)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988754

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=1e-06  Score=73.49  Aligned_cols=157  Identities=11%  Similarity=0.034  Sum_probs=89.2

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD   82 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (351)
                      ++.+.+++++|+.+.+.=...  ..+..-+-.-..+..+.+..++|+..++...     +.+..+...-.+.+.+.++++
T Consensus        55 alIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~yd  127 (652)
T KOG2376|consen   55 ALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYD  127 (652)
T ss_pred             hhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHH
Confidence            455667777777444321110  1011111122445557788888888777333     223345555566677888888


Q ss_pred             HHHHHHHHHHHcCCCC---------------------------CHhHHH---HHHHHHhhcCChHHHHHHHHHHHhcC--
Q 018743           83 LIEKILAEMSYLGIEC---------------------------SAVTYN---TIIDGYGKAKKFEEMESSFSAMVESG--  130 (351)
Q Consensus        83 ~a~~~~~~~~~~~~~~---------------------------~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~--  130 (351)
                      +|.++|+.+.+.+.+.                           ...+|.   .....+...|++.+|+++++...+..  
T Consensus       128 ealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e  207 (652)
T KOG2376|consen  128 EALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE  207 (652)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            8888888775543210                           111232   23445667899999999998872211  


Q ss_pred             ------CC----CCCHh-HHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 018743          131 ------GC----HPDIF-TLNSMISAYGNSGNIEKMEKWYNEFNLMG  166 (351)
Q Consensus       131 ------~~----~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  166 (351)
                            ..    ..... .-.-+..++-..|+..+|..++...++..
T Consensus       208 ~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~  254 (652)
T KOG2376|consen  208 KLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN  254 (652)
T ss_pred             hhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence                  00    00111 12234455677899999999998887765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.10  E-value=1.1e-06  Score=68.69  Aligned_cols=292  Identities=11%  Similarity=-0.004  Sum_probs=210.8

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHH-HHHHHHHHHhcCCHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT-YSILIKSCTKFHRFD   82 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~   82 (351)
                      +...|++..|+.-|....+.++. +-.++-.-...|...|+-..|+.=+.++.+.   +||-.. -..-...+.++|.++
T Consensus        48 lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQRg~vllK~Gele  123 (504)
T KOG0624|consen   48 LLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQRGVVLLKQGELE  123 (504)
T ss_pred             HHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHhchhhhhcccHH
Confidence            44578888999999888865333 3334444456788889999999999988874   787532 122234577999999


Q ss_pred             HHHHHHHHHHHcCCCC--CHhHH------------HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc
Q 018743           83 LIEKILAEMSYLGIEC--SAVTY------------NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN  148 (351)
Q Consensus        83 ~a~~~~~~~~~~~~~~--~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  148 (351)
                      .|..-|+...+....-  ....+            ...+..+...|+...|+.....+++..  +-|...+..-..+|..
T Consensus       124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~  201 (504)
T KOG0624|consen  124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCYIA  201 (504)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHHHh
Confidence            9999999998875211  11111            223445667899999999999998873  5677788888999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----hHHHH---------HHH
Q 018743          149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV----TYNIV---------IET  215 (351)
Q Consensus       149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l---------~~~  215 (351)
                      .|++..|+.-++...+.. ..+...+--+...+...|+.+.++...++..+.  .||..    .|..+         +..
T Consensus       202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~  278 (504)
T KOG0624|consen  202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQ  278 (504)
T ss_pred             cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888776654 455666667778888899999999988888775  34432    12211         122


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCH
Q 018743          216 FGKAGHIEKMEEYFKKMKHRGMKPNS---ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV  292 (351)
Q Consensus       216 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  292 (351)
                      ....++|.++++-.+...+.......   ..+..+-.++...|++.+|++...++.+..+. |..++..-..+|.-...+
T Consensus       279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~Y  357 (504)
T KOG0624|consen  279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMY  357 (504)
T ss_pred             HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHH
Confidence            34567788888888777766322122   23455666777889999999999999887654 688888888899988999


Q ss_pred             HHHHHHHHHHHhc
Q 018743          293 EKMGELFLTMKER  305 (351)
Q Consensus       293 ~~a~~~~~~~~~~  305 (351)
                      +.|+.-|+.+.+.
T Consensus       358 D~AI~dye~A~e~  370 (504)
T KOG0624|consen  358 DDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988765

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.09  E-value=7.9e-08  Score=72.07  Aligned_cols=154  Identities=10%  Similarity=0.049  Sum_probs=104.1

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 018743          143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI  222 (351)
Q Consensus       143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  222 (351)
                      +..|...|+++.+....+.+..    |.        ..+...++.+++...++...+..+. +...|..+...+...|++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence            3457778887776554432221    11        0112255666777677766665443 677788888888888888


Q ss_pred             HHHHHHHHHHHHcCCCccHHHHHHHHHHH-HhcCC--HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743          223 EKMEEYFKKMKHRGMKPNSITYCSLVSAY-SKAGL--IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF  299 (351)
Q Consensus       223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  299 (351)
                      ++|...|++..+.. +.+...+..+..++ ...|+  .++|..++++..+.++. +...+..+...+.+.|++++|+..|
T Consensus        90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~  167 (198)
T PRK10370         90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW  167 (198)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence            88888888877764 44667777777754 56666  47888888888877766 6777777888888888888888888


Q ss_pred             HHHHhcCCCCCHH
Q 018743          300 LTMKERHCVPDNI  312 (351)
Q Consensus       300 ~~~~~~~~~p~~~  312 (351)
                      +++.+. .+|+..
T Consensus       168 ~~aL~l-~~~~~~  179 (198)
T PRK10370        168 QKVLDL-NSPRVN  179 (198)
T ss_pred             HHHHhh-CCCCcc
Confidence            888775 344443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=2e-07  Score=71.19  Aligned_cols=290  Identities=11%  Similarity=0.083  Sum_probs=199.9

Q ss_pred             HHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH-HHHHH
Q 018743           32 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT-IIDGY  110 (351)
Q Consensus        32 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~  110 (351)
                      +.+.+..+.+..++++|++++..-.+..  +.+....+.+..+|....++..|-..++++...  .|...-|.. -...+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL   88 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence            5666777788899999999998877632  337777888899999999999999999999876  455555543 35667


Q ss_pred             hhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH--HHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018743          111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI--SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD  188 (351)
Q Consensus       111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  188 (351)
                      .+.+.+.+|+.+...|...    ++...-..-+  ......+|+..+..++++....|   +..+.+.......+.|+++
T Consensus        89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE  161 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE  161 (459)
T ss_pred             HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence            7889999999999988542    2222222222  23456788889998888865433   4455555666677899999


Q ss_pred             HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------ccHH--------HHHHH
Q 018743          189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK-------------PNSI--------TYCSL  247 (351)
Q Consensus       189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~l  247 (351)
                      .|.+-|....+-+-......|+..+. ..+.++.+.|++...++++.|++             ||..        .-+.+
T Consensus       162 aAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal  240 (459)
T KOG4340|consen  162 AAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL  240 (459)
T ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence            99999999877544335667886664 45678999999999999887643             1211        11233


Q ss_pred             HH-------HHHhcCCHhHHHHHHHHhhh-cCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          248 VS-------AYSKAGLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ  319 (351)
Q Consensus       248 ~~-------~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  319 (351)
                      +.       .+.+.|+++.|.+-+..|.. .....|+.+...+.-.- -.+++.+..+-+.-+.... +....||..++-
T Consensus       241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLl  318 (459)
T KOG4340|consen  241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLL  318 (459)
T ss_pred             HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHH
Confidence            33       34467889999888887752 23344566655443222 2344555555555555543 344678999999


Q ss_pred             HHHHcCCHHHHHHHHH
Q 018743          320 AYNALGMTEAAQNLEN  335 (351)
Q Consensus       320 ~~~~~g~~~~A~~~~~  335 (351)
                      .|++..-++.|..++.
T Consensus       319 lyCKNeyf~lAADvLA  334 (459)
T KOG4340|consen  319 LYCKNEYFDLAADVLA  334 (459)
T ss_pred             HHhhhHHHhHHHHHHh
Confidence            9999998888877664

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=4.4e-07  Score=68.19  Aligned_cols=251  Identities=11%  Similarity=0.115  Sum_probs=145.2

Q ss_pred             HHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC
Q 018743           36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK  115 (351)
Q Consensus        36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  115 (351)
                      ++-+.-.|.+..++..-......   +.+...-..+.++|...|.+.....-   +.... .|.......+......-++
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~   87 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESN   87 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcch
Confidence            44455567777777766655442   23334444455666666665443322   22222 3344444444444444444


Q ss_pred             hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018743          116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD  195 (351)
Q Consensus       116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  195 (351)
                      .++-+.-+.+.........+......-...|+..|++++|++.....      .+......=+..+.+..+.+-|.+.++
T Consensus        88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk  161 (299)
T KOG3081|consen   88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELK  161 (299)
T ss_pred             hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44443333333222222233233333445677788888888877652      123333344455667777888888888


Q ss_pred             HHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 018743          196 FMQKRFFFPTVVTYNIVIETFGK----AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD  271 (351)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  271 (351)
                      .|.+.   .+..+.+.+..++.+    .+...+|.-+|++|.++ .+|+..+.+....++...|++++|..+++......
T Consensus       162 ~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd  237 (299)
T KOG3081|consen  162 KMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD  237 (299)
T ss_pred             HHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            88764   245566666666654    34577888888888765 47788888888888888888888888888887776


Q ss_pred             CccCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 018743          272 VILDTPFFNCIISAYGQAGDVEK-MGELFLTMKE  304 (351)
Q Consensus       272 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~  304 (351)
                      .. ++.+...++.+-...|...+ ..+.+..+..
T Consensus       238 ~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  238 AK-DPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             CC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            65 56666666655555555433 3445555554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=4.7e-07  Score=74.60  Aligned_cols=300  Identities=14%  Similarity=0.048  Sum_probs=202.5

Q ss_pred             HHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhhcC
Q 018743           36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS-AVTYNTIIDGYGKAK  114 (351)
Q Consensus        36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  114 (351)
                      ..+.+..|+++.|+..|-..+...  ++|...|..-..++...|++++|++=-.+-.+.  .|+ ...|+....++.-.|
T Consensus         9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence            356678999999999999988754  668888999999999999999998877777665  455 568999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcC---CC----------------------------------------
Q 018743          115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS---GN----------------------------------------  151 (351)
Q Consensus       115 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----------------------------------------  151 (351)
                      ++++|+..|.+-++..  +.+...++.+..++...   ++                                        
T Consensus        85 ~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l  162 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL  162 (539)
T ss_pred             cHHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence            9999999999987763  44555566665554111   00                                        


Q ss_pred             -----HHHHHHHHHHHHh--------c-------CCCC------------C----------HHHHHHHHHHHHhcCCHHH
Q 018743          152 -----IEKMEKWYNEFNL--------M-------GVKA------------D----------IQTLNILTKSYGRAGMYDK  189 (351)
Q Consensus       152 -----~~~a~~~~~~~~~--------~-------~~~~------------~----------~~~~~~l~~~~~~~~~~~~  189 (351)
                           .+...+..-.+..        .       +..|            +          ..-...+.++..+..+++.
T Consensus       163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~  242 (539)
T KOG0548|consen  163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET  242 (539)
T ss_pred             hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence                 0000000000000        0       0001            0          0112344555556666777


Q ss_pred             HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH-------HHHHHHHhcCCHhHHHH
Q 018743          190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC-------SLVSAYSKAGLIMKVDS  262 (351)
Q Consensus       190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~  262 (351)
                      |.+-+....+..  -+..-++....++...|.+..+...-....+.|.. ...-|+       .+..++.+.++++.+..
T Consensus       243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~  319 (539)
T KOG0548|consen  243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK  319 (539)
T ss_pred             HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence            777777766654  35555666677788888877777766666655422 222222       23445666778888888


Q ss_pred             HHHHhhhcCCccCHHh-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018743          263 ILRQVENSDVILDTPF-------------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM  317 (351)
Q Consensus       263 ~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  317 (351)
                      .|.+.......|+...                         ...-...+.+.|++..|++.|.+++... +-|...|...
T Consensus       320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNR  398 (539)
T KOG0548|consen  320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNR  398 (539)
T ss_pred             HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHH
Confidence            8887654333332211                         1122456778899999999999999875 5578899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743          318 IQAYNALGMTEAAQNLENKMIAMKENSG  345 (351)
Q Consensus       318 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~  345 (351)
                      .-+|.+.|.+..|++-.+..++++|...
T Consensus       399 Aac~~kL~~~~~aL~Da~~~ieL~p~~~  426 (539)
T KOG0548|consen  399 AACYLKLGEYPEALKDAKKCIELDPNFI  426 (539)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCchHH
Confidence            9999999999999999999998877644

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.06  E-value=1.2e-07  Score=74.08  Aligned_cols=190  Identities=14%  Similarity=0.038  Sum_probs=126.0

Q ss_pred             CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--H
Q 018743          133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI---QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--V  207 (351)
Q Consensus       133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~  207 (351)
                      ......+..+...+...|++++|...++++.... +.+.   ..+..+..++...|++++|...++.+.+..+....  .
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            3455567777888888999999999998887643 2222   45677788888889999999999988776432121  1


Q ss_pred             hHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhH
Q 018743          208 TYNIVIETFGKA--------GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF  279 (351)
Q Consensus       208 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  279 (351)
                      .+..+..++...        |+++.|.+.++.+.... +-+...+..+.....    ...      ..        ....
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~--------~~~~  169 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RL--------AGKE  169 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence            344444455443        67788888888887662 222222222211110    000      00        0111


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743          280 NCIISAYGQAGDVEKMGELFLTMKERHC--VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       280 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  342 (351)
                      ..+...+.+.|++.+|+..++.+.+...  +.....+..+..++.+.|++++|...++.+....|
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            2456678899999999999999987521  22356888999999999999999999988876553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.03  E-value=2.8e-07  Score=69.16  Aligned_cols=120  Identities=11%  Similarity=-0.007  Sum_probs=63.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-HhcCC--HHHH
Q 018743          149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF-GKAGH--IEKM  225 (351)
Q Consensus       149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a  225 (351)
                      .++.+++...++...... +.+...|..+...|...|++++|...|++.....+. +...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence            344455555555544433 445555555555555666666666666555554332 444444444432 34444  3556


Q ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 018743          226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD  271 (351)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  271 (351)
                      ..++++..+.+ +-+...+..+...+...|++++|...|+++.+..
T Consensus       130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            66666555543 3344555555555555566666666665555543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.03  E-value=3.5e-06  Score=79.38  Aligned_cols=304  Identities=11%  Similarity=-0.013  Sum_probs=187.3

Q ss_pred             HHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCC--HhHHHHHHH
Q 018743           37 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI------ECS--AVTYNTIID  108 (351)
Q Consensus        37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~  108 (351)
                      ..+...|+++.+..+++.+... ....+..........+...|+++++..++......--      .+.  ......+..
T Consensus       382 ~~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~  460 (903)
T PRK04841        382 WSLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ  460 (903)
T ss_pred             HHHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence            3455667777777777665321 0011122223334445678899999999887754310      111  112223344


Q ss_pred             HHhhcCChHHHHHHHHHHHhcCCCCCCH----hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC---CC--CHHHHHHHHH
Q 018743          109 GYGKAKKFEEMESSFSAMVESGGCHPDI----FTLNSMISAYGNSGNIEKMEKWYNEFNLMGV---KA--DIQTLNILTK  179 (351)
Q Consensus       109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~  179 (351)
                      .+...|++++|...+++...... ..+.    ...+.+...+...|++++|...+.+.....-   .+  .......+..
T Consensus       461 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~  539 (903)
T PRK04841        461 VAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE  539 (903)
T ss_pred             HHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence            56678999999999998866321 1121    2345566677889999999999988764211   11  1234556677


Q ss_pred             HHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCc--cHHHHHHHH
Q 018743          180 SYGRAGMYDKMRSVMDFMQKR----FFF--P-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG--MKP--NSITYCSLV  248 (351)
Q Consensus       180 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~  248 (351)
                      .+...|+++.|...+++....    +..  + ....+..+...+...|++++|...+.+.....  ..+  ....+..+.
T Consensus       540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  619 (903)
T PRK04841        540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA  619 (903)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence            788999999999998876442    211  1 12334455666777899999999988875431  112  233455566


Q ss_pred             HHHHhcCCHhHHHHHHHHhhhcCCcc-CHHhH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHH
Q 018743          249 SAYSKAGLIMKVDSILRQVENSDVIL-DTPFF-----NCIISAYGQAGDVEKMGELFLTMKERHCVPD---NITFATMIQ  319 (351)
Q Consensus       249 ~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~  319 (351)
                      ..+...|+.+.|...++......... ....+     ...+..+...|+.+.|...+...........   ...+..+..
T Consensus       620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~  699 (903)
T PRK04841        620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR  699 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence            77888999999999988875421110 11111     1122445567899999999877654211111   112346677


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcc
Q 018743          320 AYNALGMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       320 ~~~~~g~~~~A~~~~~~~~~~~~  342 (351)
                      ++...|++++|...+++++....
T Consensus       700 ~~~~~g~~~~A~~~l~~al~~~~  722 (903)
T PRK04841        700 AQILLGQFDEAEIILEELNENAR  722 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHH
Confidence            88899999999999999887643

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=1.7e-06  Score=65.11  Aligned_cols=254  Identities=12%  Similarity=0.095  Sum_probs=170.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCH
Q 018743           73 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI  152 (351)
Q Consensus        73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  152 (351)
                      +-+.-.|++..++..-......  +.+...-.-+.++|...|.+....+-...   .  -.|.......+......-++.
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI~~---~--~~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEIKE---G--KATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccccccc---c--cCChHHHHHHHHHHhhCcchh
Confidence            4455667887777666554433  13444444566778888876554333222   1  233444444444444445554


Q ss_pred             HHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743          153 EKMEK-WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK  231 (351)
Q Consensus       153 ~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  231 (351)
                      +.-+. +.+.+.......+......-...|++.|++++|.+......      +......=+..+.+..+.+-|...+++
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~  162 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK  162 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44443 34444444334443444555667889999999999887622      233333335566788899999999999


Q ss_pred             HHHcCCCccHHHHHHHHHHHHhc----CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 018743          232 MKHRGMKPNSITYCSLVSAYSKA----GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC  307 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  307 (351)
                      |.+-.   +..|.+.|..++.+.    +.+..|.-+|+++.+. ..|++.+.+....++...|++++|..+++...... 
T Consensus       163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-  237 (299)
T KOG3081|consen  163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-  237 (299)
T ss_pred             HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence            99753   667888788777753    5688999999999874 35688999999999999999999999999999874 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhcccC
Q 018743          308 VPDNITFATMIQAYNALGMTEAA-QNLENKMIAMKENS  344 (351)
Q Consensus       308 ~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~  344 (351)
                      ..++.+...++-.-...|...++ .+.+.+.....|..
T Consensus       238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence            34678888888777777876544 66777776666554

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.01  E-value=2.2e-07  Score=72.48  Aligned_cols=187  Identities=11%  Similarity=0.004  Sum_probs=119.0

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh---HH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV---TY  103 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~  103 (351)
                      ....+..+...+...|+++.|...|+.+.......|. ..++..+..++...|++++|...++++.+... .+..   ++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHHHH
Confidence            5667777777788888888888888877764211111 23566667777788888888888888876542 1222   34


Q ss_pred             HHHHHHHhhc--------CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018743          104 NTIIDGYGKA--------KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN  175 (351)
Q Consensus       104 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  175 (351)
                      ..+..++...        |++++|.+.|+.+....  +.+...+..+.....    ..      ...        .....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~------~~~--------~~~~~  170 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LR------NRL--------AGKEL  170 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HH------HHH--------HHHHH
Confidence            4455555543        66777888888777652  223223322211100    00      000        00112


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743          176 ILTKSYGRAGMYDKMRSVMDFMQKRFFF--PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR  235 (351)
Q Consensus       176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  235 (351)
                      .+...+.+.|++++|...++........  .....+..+..++...|++++|..+++.+...
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4566788999999999999998776331  23567888899999999999999998888765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.00  E-value=8e-08  Score=81.83  Aligned_cols=215  Identities=7%  Similarity=-0.041  Sum_probs=145.9

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743           31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY  110 (351)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (351)
                      .-..+...+...|-...|+.+|+++..          |..++.+|...|+..+|..+..+..+.  +|++..|..+.+..
T Consensus       400 ~q~~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~  467 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL  467 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence            334456677777888888888877653          666777788888888888887777763  67888888877777


Q ss_pred             hhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018743          111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM  190 (351)
Q Consensus       111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  190 (351)
                      ....-+++|.++.+....+        +-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|
T Consensus       468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence            7666677777777665332        12222222334677777777777665543 44556666667777777777777


Q ss_pred             HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743          191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE  268 (351)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  268 (351)
                      .+.|.......+. +...||.+-.+|.+.++..+|...+++..+.+ .-+...|...+....+.|.++.|.+.+.++.
T Consensus       539 v~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll  614 (777)
T KOG1128|consen  539 VKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL  614 (777)
T ss_pred             HHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence            7777776654322 45677777777777777777777777777765 3345566666666677777777777777654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.99  E-value=3.5e-07  Score=68.62  Aligned_cols=160  Identities=11%  Similarity=-0.022  Sum_probs=118.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc
Q 018743           69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN  148 (351)
Q Consensus        69 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  148 (351)
                      ..+-..+...|+-+....+........ +.+......++....+.|++..|...+.+....  -++|..+|+.+.-+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHH
Confidence            555566777777777777776654332 445566666888888888888888888888665  37788888888888888


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 018743          149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY  228 (351)
Q Consensus       149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  228 (351)
                      .|+++.|..-|.+..+.. +-+....+.+.-.+.-.|+.+.|..++......+.. |...-..+..+....|++++|.++
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         147 LGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             ccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence            888888888888877653 345566777777788888888888888887776443 566667777788888888888887


Q ss_pred             HHHHH
Q 018743          229 FKKMK  233 (351)
Q Consensus       229 ~~~~~  233 (351)
                      ...-.
T Consensus       225 ~~~e~  229 (257)
T COG5010         225 AVQEL  229 (257)
T ss_pred             ccccc
Confidence            66544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.99  E-value=6.9e-07  Score=79.30  Aligned_cols=147  Identities=7%  Similarity=0.019  Sum_probs=103.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 018743          167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS  246 (351)
Q Consensus       167 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  246 (351)
                      .+.+...+..|.....+.|.+++|..+++...+..+. +......++..+.+.+++++|...+++..... +-+......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence            3455777777778888888888888888887775332 44555666777778888888888888877764 445666677


Q ss_pred             HHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018743          247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM  317 (351)
Q Consensus       247 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  317 (351)
                      +..++.+.|++++|..+|+++...++. +..++..+..++...|+.++|...|++..+. ..|....|+.+
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~  228 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR  228 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence            777777888888888888887774443 5677777777888888888888888887765 33444444443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.98  E-value=5.2e-07  Score=67.74  Aligned_cols=163  Identities=12%  Similarity=0.013  Sum_probs=101.7

Q ss_pred             CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743           99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT  178 (351)
Q Consensus        99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  178 (351)
                      |..+ ..+-..+...|+-+....+..+....  .+.|.......+....+.|++..|...+.+..... ++|...++.+.
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg  141 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG  141 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence            3334 44555666666666666666665332  24444455556666677777777777777766543 56667777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 018743          179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM  258 (351)
Q Consensus       179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  258 (351)
                      -+|.+.|+++.|..-|.+..+.... ++..++.+.-.+.-.|+.+.|..++......+ +-|...-..+.......|+++
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR  219 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence            7777777777777777666665333 45556666666666777777777776666553 335556666666666677777


Q ss_pred             HHHHHHHHh
Q 018743          259 KVDSILRQV  267 (351)
Q Consensus       259 ~a~~~~~~~  267 (351)
                      +|.++...-
T Consensus       220 ~A~~i~~~e  228 (257)
T COG5010         220 EAEDIAVQE  228 (257)
T ss_pred             HHHhhcccc
Confidence            776665543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.96  E-value=1.7e-06  Score=75.18  Aligned_cols=232  Identities=12%  Similarity=0.076  Sum_probs=153.4

Q ss_pred             cccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCC--------CccHHHHHHHHH
Q 018743            2 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC--------KPDVYTYSILIK   73 (351)
Q Consensus         2 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~l~~   73 (351)
                      ..|...|+.+.|.+-.+.+.      +..+|..+.+.|.+..+++-|.-.+-.|...+|.        .|+ .+=....-
T Consensus       736 SfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv  808 (1416)
T KOG3617|consen  736 SFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV  808 (1416)
T ss_pred             eEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence            35677899999988877765      5678999999999998888776666665543322        222 22222233


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHH
Q 018743           74 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE  153 (351)
Q Consensus        74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  153 (351)
                      .....|..++|+.+|++-++.         ..|=..|...|.|++|.++-+.--+   +.. ..||......+...+|.+
T Consensus       809 LAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR---iHL-r~Tyy~yA~~Lear~Di~  875 (1416)
T KOG3617|consen  809 LAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR---IHL-RNTYYNYAKYLEARRDIE  875 (1416)
T ss_pred             HHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc---eeh-hhhHHHHHHHHHhhccHH
Confidence            355778889999999887754         3455667788999999988775321   222 236666777777788888


Q ss_pred             HHHHHHHHHH----------hcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 018743          154 KMEKWYNEFN----------LMG---------VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE  214 (351)
Q Consensus       154 ~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  214 (351)
                      .|+++|++..          ...         -..|...|......+-..|+.+.|+.+|....+         |-.+++
T Consensus       876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr  946 (1416)
T KOG3617|consen  876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR  946 (1416)
T ss_pred             HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence            8888887632          111         112344455555666666777777777765543         445666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743          215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE  268 (351)
Q Consensus       215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  268 (351)
                      ..+-.|+.++|..+-++      .-|....-.|.+.|...|++.+|..+|.+..
T Consensus       947 I~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  947 IKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             eEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            66777777777766543      2255556667778888888888888877654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.95  E-value=1.7e-07  Score=66.46  Aligned_cols=95  Identities=8%  Similarity=-0.126  Sum_probs=65.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ  288 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (351)
                      +......+...|++++|...|+...... +.+...+..+..++...|++++|...|+.....++. +...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence            4445566667777777777777766654 446666777777777777777777777777766554 66666677777777


Q ss_pred             cCCHHHHHHHHHHHHhc
Q 018743          289 AGDVEKMGELFLTMKER  305 (351)
Q Consensus       289 ~g~~~~a~~~~~~~~~~  305 (351)
                      .|++++|+..|+...+.
T Consensus       105 ~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359        105 MGEPGLAREAFQTAIKM  121 (144)
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            77777777777777664

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.93  E-value=6e-08  Score=68.82  Aligned_cols=114  Identities=8%  Similarity=-0.041  Sum_probs=97.1

Q ss_pred             HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018743          227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH  306 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  306 (351)
                      .++++..+.  .|+  .+..+...+...|++++|...|+.+....+. +...+..+..++...|++++|...|++.....
T Consensus        14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            445555554  344  3556788889999999999999999988766 88899999999999999999999999999863


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       307 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                       +.+...+..+..++...|++++|+..+++.++..|....
T Consensus        89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~  127 (144)
T PRK15359         89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS  127 (144)
T ss_pred             -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence             457888999999999999999999999999999887654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.92  E-value=2.8e-06  Score=75.53  Aligned_cols=131  Identities=11%  Similarity=0.068  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 018743           65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS  144 (351)
Q Consensus        65 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  144 (351)
                      +..+..|.....+.|..++|..+++...+.. |.+......+...+.+.+++++|+..+++.....  +.+......+..
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~  162 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAK  162 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHH
Confidence            4444444444444444444444444444442 2233344444444444444444444444444432  333333444444


Q ss_pred             HHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK  199 (351)
Q Consensus       145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  199 (351)
                      ++.+.|++++|..+|+++...+ +.+..++..+...+...|+.++|...|+...+
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4444444444444444444421 22344444444444444444444444444433

>PF12854 PPR_1: PPR repeat

Probab=98.92  E-value=2.5e-09  Score=54.38  Aligned_cols=32  Identities=34%  Similarity=0.624  Sum_probs=26.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743          306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM  337 (351)
Q Consensus       306 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  337 (351)
                      |+.||..||+++|.+|++.|+.++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            67888888888888888888888888888877

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.91  E-value=2.5e-06  Score=76.88  Aligned_cols=219  Identities=16%  Similarity=0.158  Sum_probs=134.6

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI  106 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  106 (351)
                      +...+..|+..+...+++++|.++.+...+.   .|+.. .|-.+...+.+.++.+.+..+                 .+
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~   89 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-----------------NL   89 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence            5778888888888889999999988877764   34432 233333345555554433333                 33


Q ss_pred             HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018743          107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM  186 (351)
Q Consensus       107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  186 (351)
                      +.......++.-+.-+...+..   ..-+..++..+..+|-+.|+.+++..+|+++.+.. +.|..+.|.+...|... +
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d  164 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D  164 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence            4444444455333333334433   23344577778888888888888888888888876 66777888888888888 8


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------------------CCCccHHHHHHH
Q 018743          187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-------------------GMKPNSITYCSL  247 (351)
Q Consensus       187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~l  247 (351)
                      .++|.+++.+....               +...+++..+.++|.++...                   |..--..++-.+
T Consensus       165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l  229 (906)
T PRK14720        165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL  229 (906)
T ss_pred             HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence            88888887776554               33333444444444444443                   212223344444


Q ss_pred             HHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHH
Q 018743          248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG  287 (351)
Q Consensus       248 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  287 (351)
                      ...|....+++++..+++.+.+.... |......++.+|.
T Consensus       230 ~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        230 YEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence            55566666677777777777666555 5555555555554

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=2.1e-05  Score=70.25  Aligned_cols=204  Identities=14%  Similarity=0.195  Sum_probs=100.8

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI  106 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  106 (351)
                      |++....-+.++...+-+.+-+++++++.-... +.-+...-+.|+-...+ -+...+.++.+++...+ .|+      +
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------H
Confidence            566666677788888888888888888765211 11122223333333333 34455666666665443 122      2


Q ss_pred             HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018743          107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM  186 (351)
Q Consensus       107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  186 (351)
                      .......+-+++|..+|++.      ..+..+.+.++.   ..+..+.|.++-++.      ..+..|+.+..+-.+.|.
T Consensus      1055 a~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF------DMNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHh------cccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCc
Confidence            33344555566666666654      223333333333   123344444443332      123345555555555555


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHH
Q 018743          187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS  262 (351)
Q Consensus       187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  262 (351)
                      ..+|.+-|-+.      .|+..|..++....+.|.+++-.+++...++..-.|..  =+.|+-+|++.++..+.+.
T Consensus      1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred             hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHH
Confidence            55555444321      24455555555555555555555555555444333322  2345555555555444333

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.86  E-value=1.9e-07  Score=65.87  Aligned_cols=92  Identities=11%  Similarity=-0.003  Sum_probs=43.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743          211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG  290 (351)
Q Consensus       211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  290 (351)
                      .+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...++...+.++. +...+..+..++...|
T Consensus        22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g   99 (135)
T TIGR02552        22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALG   99 (135)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcC
Confidence            33444444555555555555544432 334444444444454555555555555544444322 3344444444455555


Q ss_pred             CHHHHHHHHHHHHh
Q 018743          291 DVEKMGELFLTMKE  304 (351)
Q Consensus       291 ~~~~a~~~~~~~~~  304 (351)
                      ++++|...|++..+
T Consensus       100 ~~~~A~~~~~~al~  113 (135)
T TIGR02552       100 EPESALKALDLAIE  113 (135)
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555554444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12854 PPR_1: PPR repeat

Probab=98.84  E-value=6.7e-09  Score=52.78  Aligned_cols=32  Identities=38%  Similarity=0.763  Sum_probs=17.4

Q ss_pred             CCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 018743           24 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM   55 (351)
Q Consensus        24 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   55 (351)
                      |+.||..+|++||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44555555555555555555555555555554

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.82  E-value=3.4e-06  Score=74.76  Aligned_cols=183  Identities=11%  Similarity=0.049  Sum_probs=112.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 018743            8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI   87 (351)
Q Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   87 (351)
                      ++...|+..|-+..+..+. =...|..|...|+...+..+|...|+...+.+  ..+...+......|++..+++.|..+
T Consensus       472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHH
Confidence            3455566666555554333 35577777887877777778888888877643  44566677777788888888888777


Q ss_pred             HHHHHHcCCCCC--HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 018743           88 LAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM  165 (351)
Q Consensus        88 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  165 (351)
                      .-...+.. +.-  ...|....-.|.+.++...|...|+...+..  |.|...|..+..+|.+.|++..|.++|.+....
T Consensus       549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L  625 (1238)
T KOG1127|consen  549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL  625 (1238)
T ss_pred             HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence            43332221 111  1122234445666777777777777776653  556667777788888888888888888776553


Q ss_pred             CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          166 GVKADI-QTLNILTKSYGRAGMYDKMRSVMDFMQ  198 (351)
Q Consensus       166 ~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  198 (351)
                        .|+. ..--...-..+..|.+.++...+..+.
T Consensus       626 --rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  626 --RPLSKYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             --CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence              2332 111122233455677777766666553

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=5e-06  Score=62.23  Aligned_cols=190  Identities=11%  Similarity=0.096  Sum_probs=129.9

Q ss_pred             hcCChHHHHHHHHHHHhcC--C-CCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018743          112 KAKKFEEMESSFSAMVESG--G-CHPDIF-TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY  187 (351)
Q Consensus       112 ~~~~~~~a~~~~~~~~~~~--~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  187 (351)
                      ...+.++..+++.++....  | ..++.. .|..++-+....|+.+.|..+++.+...- +.+..+-..-.-.+-..|++
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence            3456788888888776532  2 334444 34455566677788888888888876643 44444443334445567888


Q ss_pred             HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 018743          188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV  267 (351)
Q Consensus       188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  267 (351)
                      ++|.++++.+.+..+ .|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus       103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            888888888877653 36667766666666777777888777777766 4678888888888888888888888888887


Q ss_pred             hhcCCccCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhc
Q 018743          268 ENSDVILDTPFFNCIISAYGQAG---DVEKMGELFLTMKER  305 (351)
Q Consensus       268 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~  305 (351)
                      .-..|. ++..+..+...+.-.|   +...+.++|.+..+.
T Consensus       181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            766554 6666666666554443   466677778777764

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=1e-05  Score=72.06  Aligned_cols=282  Identities=15%  Similarity=0.163  Sum_probs=140.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 018743            7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK   86 (351)
Q Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   86 (351)
                      .+-+++|..+|....     .+..+.+.|+.   .-+.+++|.++-++..+       +..|..+..+-.+.|...+|.+
T Consensus      1061 ~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n~-------p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCNE-------PAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred             hhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhCC-------hHHHHHHHHHHHhcCchHHHHH
Confidence            344556666665432     24445555544   33455566555554432       2346666666666666666665


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 018743           87 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG  166 (351)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  166 (351)
                      -|-+.      .|+..|..+++...+.|.|++-.+.+.-..++. -.|.  .-+.++-+|++.++..+..+++.      
T Consensus      1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~--id~eLi~AyAkt~rl~elE~fi~------ 1190 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPY--IDSELIFAYAKTNRLTELEEFIA------ 1190 (1666)
T ss_pred             HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCcc--chHHHHHHHHHhchHHHHHHHhc------
Confidence            54332      255566666777777777777666666554442 2332  23456666666666655444331      


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH---------------
Q 018743          167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK---------------  231 (351)
Q Consensus       167 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------------  231 (351)
                       -|+......+..-|...+.++.|.-+|..         +..|..+...+...|++..|.+.-++               
T Consensus      1191 -gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1191 -GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred             -CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence             34555555555556666666665555542         33345555555555555555443332               


Q ss_pred             ---------HHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743          232 ---------MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM  302 (351)
Q Consensus       232 ---------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  302 (351)
                               |...++-....-...++..|...|-+++.+.+++......-. ....|+.|.-.|.+- +.++..+.++-.
T Consensus      1261 d~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA-HMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA-HMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred             chhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH-HHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence                     111122222333444555555555555555555543322111 233444444444432 233333322222


Q ss_pred             HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743          303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENK  336 (351)
Q Consensus       303 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  336 (351)
                      -.      ....-.+++++.+..-|.+..-++.+
T Consensus      1339 ws------RvNipKviRA~eqahlW~ElvfLY~~ 1366 (1666)
T KOG0985|consen 1339 WS------RVNIPKVIRAAEQAHLWSELVFLYDK 1366 (1666)
T ss_pred             HH------hcchHHHHHHHHHHHHHHHHHHHHHh
Confidence            11      11223456677766666666655543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=2.3e-05  Score=58.84  Aligned_cols=189  Identities=8%  Similarity=0.045  Sum_probs=118.6

Q ss_pred             CCHHHHHHHHHHHHHc---C-CCCCHh-HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHH
Q 018743           79 HRFDLIEKILAEMSYL---G-IECSAV-TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE  153 (351)
Q Consensus        79 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  153 (351)
                      .+.++..+++.++...   | ..++.. .|..++-+....|+.+.|...++++..+  ++.+..+-..-...+-..|+++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchh
Confidence            3455555655555432   2 333333 3444555566677777788777777665  3333333333333445567778


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK  233 (351)
Q Consensus       154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  233 (351)
                      +|+++++.+.+.+ +.|..++..-+...-..|..-+|++-+....+.. ..|...|.-+...|...|+++.|.-.++++.
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            8888888877765 5566666666666666777777777777766653 3478888888888888888888888888877


Q ss_pred             HcCCCccHHHHHHHHHHHHhcC---CHhHHHHHHHHhhhcCC
Q 018743          234 HRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSDV  272 (351)
Q Consensus       234 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~  272 (351)
                      -.. |.++..+..+...+...|   +.+.+.+.|.+..+..+
T Consensus       182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            653 445555566666555444   44557777777776644

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.80  E-value=3.1e-06  Score=76.26  Aligned_cols=235  Identities=13%  Similarity=0.078  Sum_probs=157.2

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHH
Q 018743           62 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS  141 (351)
Q Consensus        62 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  141 (351)
                      +.+...+..|+..+...+++++|.++.+...+.. |-....|..+...+.+.++..++..+                  .
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~   88 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL------------------N   88 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh------------------h
Confidence            4456788899999999999999999999777663 33344444455566666665554444                  2


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 018743          142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH  221 (351)
Q Consensus       142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  221 (351)
                      ++.......++..+..+...+...  .-+...+..++.+|.+.|+.+++..+++++.+..+. ++...|.+...|... +
T Consensus        89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d  164 (906)
T PRK14720         89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D  164 (906)
T ss_pred             hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence            333333444454444444455542  345567888999999999999999999999998744 889999999999999 9


Q ss_pred             HHHHHHHHHHHHHcCCCccHHHHHHHHHH---H--HhcCCHhHHHHHHHHhhhc-CCccCHHhHHHHHHHHHhcCCHHHH
Q 018743          222 IEKMEEYFKKMKHRGMKPNSITYCSLVSA---Y--SKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKM  295 (351)
Q Consensus       222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~--~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a  295 (351)
                      .++|..++.+.+..-+  +..-|+.+...   +  ....+++.-..+.+.+... +..--..++-.+-..|-..++|+++
T Consensus       165 L~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~  242 (906)
T PRK14720        165 KEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV  242 (906)
T ss_pred             HHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence            9999999998876521  11111111111   1  1223444445555555433 3233345566667788888899999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018743          296 GELFLTMKERHCVPDNITFATMIQAYN  322 (351)
Q Consensus       296 ~~~~~~~~~~~~~p~~~~~~~l~~~~~  322 (351)
                      ..+++.+.+.. +-|.....-++..|.
T Consensus       243 i~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        243 IYILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            99999999863 335666777777776

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.79  E-value=2.7e-06  Score=73.21  Aligned_cols=165  Identities=17%  Similarity=0.243  Sum_probs=79.9

Q ss_pred             HhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018743          110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK  189 (351)
Q Consensus       110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  189 (351)
                      -.....|.+|+.+++.+..+   .....-|..+...|...|+++.|.++|.+.-         .++--+.+|.+.|+|+.
T Consensus       742 ai~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d  809 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED  809 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence            33455566666666655433   2222345555666666666666666665421         23345566666666666


Q ss_pred             HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743          190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN  269 (351)
Q Consensus       190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  269 (351)
                      |.++-.+..  |+......|-.-..-+-..|++.+|.++|-.+-    .|+.     .|..|-+.|..+..+++..+-..
T Consensus       810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~  878 (1636)
T KOG3616|consen  810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG  878 (1636)
T ss_pred             HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence            666554432  223334444444444555555555555543221    2221     23444455555544444433221


Q ss_pred             cCCccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743          270 SDVILDTPFFNCIISAYGQAGDVEKMGELFL  300 (351)
Q Consensus       270 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  300 (351)
                         ..-..+...+..-+-..|+...|..-|-
T Consensus       879 ---d~l~dt~~~f~~e~e~~g~lkaae~~fl  906 (1636)
T KOG3616|consen  879 ---DHLHDTHKHFAKELEAEGDLKAAEEHFL  906 (1636)
T ss_pred             ---hhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence               1112233444445555555555555443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.75  E-value=9.1e-07  Score=62.43  Aligned_cols=110  Identities=14%  Similarity=0.087  Sum_probs=68.7

Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743           16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   95 (351)
                      .++...+..+. +......+...+...|++++|.+.|+.+....  +.+...+..+...+...|+++.|..+++...+.+
T Consensus         5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34444444333 44555566666667777777777777666532  3455566666666667777777777777666654


Q ss_pred             CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743           96 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                       +.+...+..+..++...|++++|.+.|+...+.
T Consensus        82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             445666666666677777777777777766654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.74  E-value=5.1e-06  Score=73.75  Aligned_cols=152  Identities=8%  Similarity=-0.023  Sum_probs=112.0

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 018743            8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI   87 (351)
Q Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   87 (351)
                      -+...|.+.|+..-+.+.. +...+......|++..+++.|..+.-...+......-...|....-.+...++...+...
T Consensus       506 ~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~  584 (1238)
T KOG1127|consen  506 DDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE  584 (1238)
T ss_pred             HHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence            3667888899988887655 888999999999999999999998544433211111122243444457788999999999


Q ss_pred             HHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 018743           88 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF-TLNSMISAYGNSGNIEKMEKWYNEFNL  164 (351)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~  164 (351)
                      |+...+.. |.|...|..++.+|.++|++..|.++|.+....   .|+.. .-....-.-+..|.+.++...+.....
T Consensus       585 fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L---rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  585 FQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL---RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             HHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc---CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            99988876 668889999999999999999999999988654   44432 222233445678889998888877653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.70  E-value=5.5e-05  Score=62.27  Aligned_cols=231  Identities=10%  Similarity=0.027  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCC-CCccHHHHHHHHHHHHhcCCHHHHH
Q 018743           10 PEQASLLFEVMLS---DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLIE   85 (351)
Q Consensus        10 ~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~   85 (351)
                      .....+.|+++..   .+-.|...    ++..=.-..++..+...-+++....+ -.|+...+...+.+......-..+.
T Consensus       219 p~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~  294 (484)
T COG4783         219 PQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAA  294 (484)
T ss_pred             chhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchH
Confidence            4445667777763   33333322    12222233445555555666654322 2344445555555443333323333


Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 018743           86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM  165 (351)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  165 (351)
                      .++.+..+   +.-....-...-.+...|++++|+..++.++..  .|.|+..+......+.+.++..+|.+.++.+...
T Consensus       295 ~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l  369 (484)
T COG4783         295 DLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL  369 (484)
T ss_pred             HHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            33322222   112222333334455678888888888887765  3556666666777888888888888888887764


Q ss_pred             CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 018743          166 GVKAD-IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY  244 (351)
Q Consensus       166 ~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  244 (351)
                      .  |+ ....-.+..++.+.|++.+|..++......... |+..|..+.++|...|+..++..-..+.            
T Consensus       370 ~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~------------  434 (484)
T COG4783         370 D--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEG------------  434 (484)
T ss_pred             C--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHH------------
Confidence            3  43 455566777888888888888888777665433 7778888888888888777766554433            


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743          245 CSLVSAYSKAGLIMKVDSILRQVENS  270 (351)
Q Consensus       245 ~~l~~~~~~~g~~~~a~~~~~~~~~~  270 (351)
                            +...|+++.|...+....+.
T Consensus       435 ------~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         435 ------YALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             ------HHhCCCHHHHHHHHHHHHHh
Confidence                  34456677777666665543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.68  E-value=3.5e-06  Score=60.09  Aligned_cols=126  Identities=13%  Similarity=0.082  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCH--HhHHHH
Q 018743          208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN---SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT--PFFNCI  282 (351)
Q Consensus       208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l  282 (351)
                      .|..++..+ ..++...+...++.+.... +.+   ....-.+...+...|++++|...|+.+......|+.  .....+
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            344444444 3677777777777777653 323   233344556777788888888888887776533322  234456


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743          283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM  337 (351)
Q Consensus       283 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  337 (351)
                      ...+...|++++|+..++.....  ...+..+......|.+.|++++|+..|++.
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            67777888888888888664332  234455667777788888888888888765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.67  E-value=3.6e-05  Score=67.39  Aligned_cols=89  Identities=20%  Similarity=0.228  Sum_probs=50.9

Q ss_pred             HHHHHhcCCHhHHHHHHHH--------h--hhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----------cC-
Q 018743          248 VSAYSKAGLIMKVDSILRQ--------V--ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE----------RH-  306 (351)
Q Consensus       248 ~~~~~~~g~~~~a~~~~~~--------~--~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~-  306 (351)
                      +..|-+.|.+.+|+++-=+        +  .+.+...|+...+.-...++...++++|..++-..++          .| 
T Consensus      1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv 1121 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNV 1121 (1416)
T ss_pred             HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3445566666666654211        1  1233344666666666677777777777666543321          11 


Q ss_pred             ---------------CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743          307 ---------------CVPDN----ITFATMIQAYNALGMTEAAQNLENK  336 (351)
Q Consensus       307 ---------------~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~  336 (351)
                                     -.|+.    .....+...|.++|.+..|-+-|.+
T Consensus      1122 ~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1122 RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred             chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence                           12222    3566777889999998888665543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.65  E-value=2.3e-05  Score=67.75  Aligned_cols=284  Identities=14%  Similarity=0.142  Sum_probs=128.3

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 018743            6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE   85 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   85 (351)
                      ..++|.+|+.+++.+...+.  -..-|..+.+.|...|+++.|.++|-+...          ++-.+..|.+.|+|..|.
T Consensus       744 ~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw~da~  811 (1636)
T KOG3616|consen  744 GAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKWEDAF  811 (1636)
T ss_pred             hhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccHHHHH
Confidence            34445555555555544321  122344445555555555555555543221          333444555555555555


Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 018743           86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM  165 (351)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  165 (351)
                      ++-.+..  |...+...|..-..-+-+.|++.+|.++|-.+.     .|+.     .|..|-+.|..+..+++..+-.. 
T Consensus       812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~-  878 (1636)
T KOG3616|consen  812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG-  878 (1636)
T ss_pred             HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhCh-
Confidence            5444332  223334444444444445555555555544331     2222     23455555555555555544321 


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH--
Q 018743          166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT--  243 (351)
Q Consensus       166 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--  243 (351)
                        ..-..|...+..-+-..|+...|...|-+..+         |...+..|-..+-|++|.++-+.   .| ..|..-  
T Consensus       879 --d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---eg-g~n~~k~v  943 (1636)
T KOG3616|consen  879 --DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EG-GANAEKHV  943 (1636)
T ss_pred             --hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cc-cccHHHHH
Confidence              11123444555566666666666665544322         33444445555555555444332   11 111110  


Q ss_pred             ----------------------HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743          244 ----------------------YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT  301 (351)
Q Consensus       244 ----------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  301 (351)
                                            ...-+...+..+.++-|..+-+-..+..   ...+.-.+...+-..|++++|-+.|-+
T Consensus       944 ~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyve 1020 (1636)
T KOG3616|consen  944 AFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVE 1020 (1636)
T ss_pred             HHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHH
Confidence                                  1111122223333444444333333221   112233444455667788888777777


Q ss_pred             HHhcCCCCCHHHHHHHH-----HHHHHcC-CHHHHHHHH
Q 018743          302 MKERHCVPDNITFATMI-----QAYNALG-MTEAAQNLE  334 (351)
Q Consensus       302 ~~~~~~~p~~~~~~~l~-----~~~~~~g-~~~~A~~~~  334 (351)
                      .++.+-  -..||-..+     .-+.+.| ++++|..+|
T Consensus      1021 aiklnt--ynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 1021 AIKLNT--YNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred             Hhhccc--ccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence            765421  122333221     2245666 677777665

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.63  E-value=5.4e-05  Score=62.29  Aligned_cols=119  Identities=18%  Similarity=0.105  Sum_probs=80.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHh
Q 018743          180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIM  258 (351)
Q Consensus       180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  258 (351)
                      .+...|+++.|+..++.+....+ -|+..+......+...++.++|.+.++++...  .|+ ......+..++.+.|++.
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~  391 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ  391 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence            34456777777777777666532 25555556667777777777777777777765  333 455566777777777777


Q ss_pred             HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743          259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM  302 (351)
Q Consensus       259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  302 (351)
                      +|..+++......+. |+..|..|.++|...|+..++.....+.
T Consensus       392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            777777777766655 7777777777777777776666555443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.61  E-value=0.00033  Score=62.03  Aligned_cols=192  Identities=11%  Similarity=0.047  Sum_probs=100.7

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHH
Q 018743            6 KCKQPEQASLLFEVMLSDGLKPSVDVYTA-LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI   84 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   84 (351)
                      ..+++.+|++..+.+.+..  |+...... -.-.+.+.|+.++|..+++......  ..|..|...+-.+|...++.++|
T Consensus        21 d~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHH
Confidence            3456666666666666552  22221111 1223456666666666666555422  12555666666666666666666


Q ss_pred             HHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHH--------------------------------------------HH
Q 018743           85 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE--------------------------------------------ME  120 (351)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------------------------------------------a~  120 (351)
                      ..+|+.....  -|+......+..+|.+.+.+.+                                            |.
T Consensus        97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~  174 (932)
T KOG2053|consen   97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAE  174 (932)
T ss_pred             HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence            6666666554  3445555555555555544433                                            23


Q ss_pred             HHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE-FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK  199 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  199 (351)
                      +.++.+.+..|...+..-.......+...|++++|.+++.. ..+.-.+.+...-+.-+..+...+++.+..++-.++..
T Consensus       175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            33333333322111122222223344456667777777733 22222233444445666777778888888888888777


Q ss_pred             cCCC
Q 018743          200 RFFF  203 (351)
Q Consensus       200 ~~~~  203 (351)
                      .+..
T Consensus       255 k~~D  258 (932)
T KOG2053|consen  255 KGND  258 (932)
T ss_pred             hCCc
Confidence            6543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.57  E-value=5.9e-06  Score=68.11  Aligned_cols=120  Identities=12%  Similarity=0.016  Sum_probs=55.4

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 018743          143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI  222 (351)
Q Consensus       143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  222 (351)
                      +..+...++++.|+.+++++.+..  |+  ....++..+...++..+|.+++.+....... +...+..-...+.+.+++
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence            334444455555555555554432  22  2223444444445555555555544433221 344444444445555555


Q ss_pred             HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743          223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE  268 (351)
Q Consensus       223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  268 (351)
                      +.|+.+.+++.... |-+..+|..|..+|...|+++.|+..++.+.
T Consensus       251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            55555555555441 2233355555555555555555555554433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.56  E-value=6.4e-06  Score=67.90  Aligned_cols=121  Identities=16%  Similarity=0.132  Sum_probs=67.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743          211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG  290 (351)
Q Consensus       211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  290 (351)
                      .++..+...++++.|..+++++.+..  |+  ....+++.+...++-.+|.+++.+..+..+. +...+..-...+.+.+
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence            34444445556666666666666542  33  2233555555555556666666665544333 4555555555566666


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743          291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM  337 (351)
Q Consensus       291 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  337 (351)
                      +++.|+++.+++.+. .+-+..+|..|..+|.+.|+++.|+..++.+
T Consensus       249 ~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  249 KYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             CHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            666666666666654 1223446666666666666666666665544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.55  E-value=0.00034  Score=58.57  Aligned_cols=312  Identities=12%  Similarity=0.138  Sum_probs=176.9

Q ss_pred             HHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 018743           20 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS   99 (351)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   99 (351)
                      -.+.++. |..+|..||+-+..+ .++++.+.++++...  .+-+...|..-+..-.+.++++.++.+|.+....-  .+
T Consensus        12 rie~nP~-di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln   85 (656)
T KOG1914|consen   12 RIEENPY-DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN   85 (656)
T ss_pred             HHhcCCc-cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence            3344444 999999999987666 899999999999964  35567789999999999999999999999988763  46


Q ss_pred             HhHHHHHHHHHhh-cCCh----HHHHHHHHHHHhcCCCCCC-HhHHHHHHHHH---------hcCCCHHHHHHHHHHHHh
Q 018743          100 AVTYNTIIDGYGK-AKKF----EEMESSFSAMVESGGCHPD-IFTLNSMISAY---------GNSGNIEKMEKWYNEFNL  164 (351)
Q Consensus       100 ~~~~~~l~~~~~~-~~~~----~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~  164 (351)
                      ...|...+.--.+ .++.    +...+.|+-..+.-|..+- ...|+..+..+         ....+++...++|+++..
T Consensus        86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~  165 (656)
T KOG1914|consen   86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV  165 (656)
T ss_pred             HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence            7777776653332 2222    2233344444444333222 22344433322         122234445555555433


Q ss_pred             cCCCCCHHH-----------------------------------------------------------------HHHHHH
Q 018743          165 MGVKADIQT-----------------------------------------------------------------LNILTK  179 (351)
Q Consensus       165 ~~~~~~~~~-----------------------------------------------------------------~~~l~~  179 (351)
                      ..+..=...                                                                 |..+|.
T Consensus       166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~  245 (656)
T KOG1914|consen  166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK  245 (656)
T ss_pred             CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence            211000000                                                                 100000


Q ss_pred             H-------------------------------------------------HHhcCC-------HHHHHHHHHHHHHcCCC
Q 018743          180 S-------------------------------------------------YGRAGM-------YDKMRSVMDFMQKRFFF  203 (351)
Q Consensus       180 ~-------------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~  203 (351)
                      -                                                 +...|+       .+++..+++.....-..
T Consensus       246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~  325 (656)
T KOG1914|consen  246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK  325 (656)
T ss_pred             HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence            0                                                 000010       11122222221111111


Q ss_pred             CCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-CHHh
Q 018743          204 PTVVTYNIVIETFGKA---GHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPF  278 (351)
Q Consensus       204 ~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~  278 (351)
                      -+..+|..+...--..   ...+....++.++...- +.|+ .+|..++..-.+..-+..|..+|.++.+.+..+ ++.+
T Consensus       326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfV  404 (656)
T KOG1914|consen  326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFV  404 (656)
T ss_pred             HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhH
Confidence            1111111111110000   11333444444444321 2222 456777777777788899999999999877766 6677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743          279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       279 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  340 (351)
                      .++++..+| .++.+-|.++|+--.+. ...++..-...+.-+...++-..|+.+|++.+..
T Consensus       405 a~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  405 AAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            777887666 57889999999976654 3334444567777888888888888888888877

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.53  E-value=1.2e-05  Score=57.37  Aligned_cols=127  Identities=11%  Similarity=0.118  Sum_probs=65.3

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHhhccCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHH
Q 018743           31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTII  107 (351)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~  107 (351)
                      .|..++..+ ..++...+...++.+.+..+-.+ .....-.+...+...|++++|...|+........++  ......|.
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            344444443 35666666666666665321110 112233334455566666666666666666542222  12333455


Q ss_pred             HHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 018743          108 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE  161 (351)
Q Consensus       108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  161 (351)
                      ..+...|++++|+..++.....   ......+.....++.+.|++++|...|+.
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            6666666666666666553211   22333455555666666666666666654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.49  E-value=8.3e-06  Score=56.04  Aligned_cols=102  Identities=15%  Similarity=0.077  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 018743          243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVI--LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV--PDNITFATMI  318 (351)
Q Consensus       243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~  318 (351)
                      ++..++..+...|++++|...+..+.+..+.  .....+..+..++.+.|++++|...|+.+......  .....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3444555555566666666666665543321  01234444555666666666666666665543111  1133455555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          319 QAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       319 ~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      .++.+.|++++|...++++++..|.+
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            56666666666666666666655543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.45  E-value=0.00095  Score=59.31  Aligned_cols=226  Identities=10%  Similarity=0.058  Sum_probs=151.0

Q ss_pred             HhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh
Q 018743           39 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS--CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF  116 (351)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (351)
                      ....+++..|+....++.+..   |+.. |..++.+  ..+.|+.++|..+++.....+.. |..|...+-.+|...++.
T Consensus        19 ~ld~~qfkkal~~~~kllkk~---Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~   93 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKH---PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL   93 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHC---CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence            346788999999999988754   4432 3333443  55899999999999988776644 888999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------
Q 018743          117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM----------  186 (351)
Q Consensus       117 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------  186 (351)
                      ++|..+|++..+.   .|+..-...+..+|.+.+++.+-.+.--++-+ ..+.+...|-.+++.+...-.          
T Consensus        94 d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~  169 (932)
T KOG2053|consen   94 DEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPIL  169 (932)
T ss_pred             hHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchh
Confidence            9999999999876   46677777788889998887654444333333 234455555555555443211          


Q ss_pred             HHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHH
Q 018743          187 YDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYF-KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL  264 (351)
Q Consensus       187 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  264 (351)
                      ..-|.+.++.+.+.+ .--+..-.......+...|++++|.+++ ....+.-.+.+...-+.-+..+...+++.+..++-
T Consensus       170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~  249 (932)
T KOG2053|consen  170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS  249 (932)
T ss_pred             HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence            123445555554443 1112222222233445678899999988 44444433445555566777788888999988888


Q ss_pred             HHhhhcCCc
Q 018743          265 RQVENSDVI  273 (351)
Q Consensus       265 ~~~~~~~~~  273 (351)
                      .++...+..
T Consensus       250 ~~Ll~k~~D  258 (932)
T KOG2053|consen  250 SRLLEKGND  258 (932)
T ss_pred             HHHHHhCCc
Confidence            888877654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.45  E-value=6.9e-06  Score=53.73  Aligned_cols=97  Identities=19%  Similarity=0.148  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA  323 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  323 (351)
                      +..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|.+.++...... +.+..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            334455556666677777777666655433 33555566666666777777777777766542 2234566666667777


Q ss_pred             cCCHHHHHHHHHHHHHhcc
Q 018743          324 LGMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       324 ~g~~~~A~~~~~~~~~~~~  342 (351)
                      .|+++.|...+++.++..|
T Consensus        81 ~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          81 LGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHhHHHHHHHHHHHHccCC
Confidence            7777777777777665443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.41  E-value=2.4e-05  Score=54.93  Aligned_cols=91  Identities=4%  Similarity=-0.122  Sum_probs=54.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743          212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD  291 (351)
Q Consensus       212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  291 (351)
                      +...+...|++++|..+|+-+.... +.+..-|..|..++-..|++++|+..|......++. ++..+-.+..++...|+
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~  118 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDN  118 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCC
Confidence            3444455666666666666665543 334455556666666666666666666666655544 55555566666666666


Q ss_pred             HHHHHHHHHHHHh
Q 018743          292 VEKMGELFLTMKE  304 (351)
Q Consensus       292 ~~~a~~~~~~~~~  304 (351)
                      .+.|.+.|+..+.
T Consensus       119 ~~~A~~aF~~Ai~  131 (157)
T PRK15363        119 VCYAIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666665554

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.38  E-value=8.4e-07  Score=45.78  Aligned_cols=33  Identities=42%  Similarity=0.567  Sum_probs=24.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018743          278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPD  310 (351)
Q Consensus       278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~  310 (351)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            567777777777777777777777777777766

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.37  E-value=1.1e-05  Score=66.83  Aligned_cols=113  Identities=12%  Similarity=0.160  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 018743          168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR--FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC  245 (351)
Q Consensus       168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  245 (351)
                      +.+......++..+....+.+.+..++-+....  ....-+.|..++++.|...|..+.++.++..=...|+-||..+++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            334444444444444444455555544444432  111112233345555555555555555555555555555555555


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHH
Q 018743          246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN  280 (351)
Q Consensus       246 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  280 (351)
                      .|+..+.+.|++..|.++...|...+...++.++.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~  177 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQA  177 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHH
Confidence            55555555555555555554444333333333333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=0.00023  Score=57.47  Aligned_cols=258  Identities=9%  Similarity=-0.049  Sum_probs=128.5

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFD   82 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~   82 (351)
                      +.+..++..|+..+....+..+. +..-|..-+..+...|++++|+--.++-.+.   +|. .......-+++...++..
T Consensus        59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~---kd~~~k~~~r~~~c~~a~~~~i  134 (486)
T KOG0550|consen   59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL---KDGFSKGQLREGQCHLALSDLI  134 (486)
T ss_pred             HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec---CCCccccccchhhhhhhhHHHH
Confidence            44566777788888877777655 5666666666677777777776655554432   111 112222222233333333


Q ss_pred             HHHHHHH---------------HHHHcC-CCCCHhHHHHH-HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHH
Q 018743           83 LIEKILA---------------EMSYLG-IECSAVTYNTI-IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA  145 (351)
Q Consensus        83 ~a~~~~~---------------~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  145 (351)
                      +|.+.++               ...... -+|.-.++..+ ..++.-.|++++|.+.--.+++..  ..+......--.+
T Consensus       135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vrg~~  212 (486)
T KOG0550|consen  135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNAEALYVRGLC  212 (486)
T ss_pred             HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchhHHHHhcccc
Confidence            3332222               111111 11222333322 244556677777777766665543  2222222222233


Q ss_pred             HhcCCCHHHHHHHHHHHHhcCCCCCHHHHH-------------HHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHhH
Q 018743          146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLN-------------ILTKSYGRAGMYDKMRSVMDFMQKR---FFFPTVVTY  209 (351)
Q Consensus       146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~  209 (351)
                      +.-.++.+.+...|++.+..+  |+...-.             .-..-..+.|.+..|.+.+.+.+..   +..|+...|
T Consensus       213 ~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY  290 (486)
T KOG0550|consen  213 LYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY  290 (486)
T ss_pred             cccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH
Confidence            444667777777777766543  3322111             1122234566666666666665543   233445555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743          210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS  270 (351)
Q Consensus       210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  270 (351)
                      .....+..+.|+..+|+.--......+ +.-...+..-..++...+++++|.+-++...+.
T Consensus       291 ~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  291 GNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            555556666666666666655555432 111122333333444556666666666665544

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.32  E-value=2.3e-05  Score=65.09  Aligned_cols=122  Identities=15%  Similarity=0.173  Sum_probs=71.6

Q ss_pred             CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC-CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018743           97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN  175 (351)
Q Consensus        97 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  175 (351)
                      +.+......+++.+....+.+.+..++-+....... ..-..|..++++.|...|..+.++.++..=...|+-||..+++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            445555555566666666666666666666443211 1122344566666666666666666666666666666666666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 018743          176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK  218 (351)
Q Consensus       176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  218 (351)
                      .|+..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~  185 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK  185 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence            6666666666666666666666555544455555444444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.31  E-value=2.4e-06  Score=54.47  Aligned_cols=81  Identities=16%  Similarity=0.114  Sum_probs=42.8

Q ss_pred             cCCHhHHHHHHHHhhhcCCc-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 018743          254 AGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN  332 (351)
Q Consensus       254 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  332 (351)
                      .|+++.|+.+++++.+..+. ++...+..+..++.+.|++++|..+++. .+.+. .+......+..+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            35666666666666655442 2333444456666666666666666666 22111 122333344566666666666666


Q ss_pred             HHHH
Q 018743          333 LENK  336 (351)
Q Consensus       333 ~~~~  336 (351)
                      .+++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.30  E-value=1.5e-06  Score=44.41  Aligned_cols=32  Identities=34%  Similarity=0.535  Sum_probs=19.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018743          278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVP  309 (351)
Q Consensus       278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p  309 (351)
                      +|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            55666666666666666666666666665554

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.29  E-value=1.9e-06  Score=44.38  Aligned_cols=33  Identities=45%  Similarity=0.813  Sum_probs=22.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 018743          208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN  240 (351)
Q Consensus       208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  240 (351)
                      +|+.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            466666666666666666666666666666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.29  E-value=2.6e-05  Score=64.45  Aligned_cols=102  Identities=9%  Similarity=-0.015  Sum_probs=85.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743          212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD  291 (351)
Q Consensus       212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  291 (351)
                      -...+...|++++|+..|.++++.. +-+...|..+..++...|++++|+..++++.+..+. +...|..+..+|...|+
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence            3556678899999999999999875 557788889999999999999999999999988765 77888899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018743          292 VEKMGELFLTMKERHCVPDNITFATM  317 (351)
Q Consensus       292 ~~~a~~~~~~~~~~~~~p~~~~~~~l  317 (351)
                      +++|+..|+++.+.  .|+.......
T Consensus        86 ~~eA~~~~~~al~l--~P~~~~~~~~  109 (356)
T PLN03088         86 YQTAKAALEKGASL--APGDSRFTKL  109 (356)
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHH
Confidence            99999999999975  4554444333

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.29  E-value=0.00015  Score=50.98  Aligned_cols=91  Identities=4%  Similarity=-0.071  Sum_probs=43.6

Q ss_pred             HHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 018743          248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT  327 (351)
Q Consensus       248 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  327 (351)
                      ...+...|++++|.++|+.+...++. +...|-.|.-++-..|++.+|+..|..+.... +-|+..+-.+..++...|+.
T Consensus        42 A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~  119 (157)
T PRK15363         42 AMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNV  119 (157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence            33344445555555555554444433 44444445555555555555555555544433 22344444444555555555


Q ss_pred             HHHHHHHHHHHHh
Q 018743          328 EAAQNLENKMIAM  340 (351)
Q Consensus       328 ~~A~~~~~~~~~~  340 (351)
                      +.|++.|+.++..
T Consensus       120 ~~A~~aF~~Ai~~  132 (157)
T PRK15363        120 CYAIKALKAVVRI  132 (157)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555544443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.26  E-value=2.5e-06  Score=43.63  Aligned_cols=32  Identities=38%  Similarity=0.690  Sum_probs=18.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 018743          208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP  239 (351)
Q Consensus       208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  239 (351)
                      +|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555566666666666555555554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.26  E-value=0.0001  Score=50.57  Aligned_cols=97  Identities=15%  Similarity=0.035  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc--CHHhHHHHHH
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRGM--KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL--DTPFFNCIIS  284 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~  284 (351)
                      +...+..+...|++++|.+.+..+.....  +.....+..+..++...|+++.|...++.+....+..  ...++..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            44455566666777777777766665421  0113345556666667777777777777666543221  2345556666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhc
Q 018743          285 AYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       285 ~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      ++.+.|++++|.+.++++.+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHH
Confidence            667777777777777777665

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.26  E-value=2.7e-06  Score=54.19  Aligned_cols=47  Identities=23%  Similarity=0.275  Sum_probs=19.9

Q ss_pred             CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHH
Q 018743            8 KQPEQASLLFEVMLSDGLK-PSVDVYTALVSAYGQSGLLDEAFSTIND   54 (351)
Q Consensus         8 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~   54 (351)
                      |+++.|+.+++++.+..+. ++...+..+..++.+.|++++|+++++.
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4444444444444444321 1223333344444444444444444444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.25  E-value=0.00014  Score=63.05  Aligned_cols=143  Identities=5%  Similarity=0.020  Sum_probs=102.2

Q ss_pred             CCCCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC--------CHhHHHHHHHHh
Q 018743          201 FFFPTVVTYNIVIETFGKA-----GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG--------LIMKVDSILRQV  267 (351)
Q Consensus       201 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~  267 (351)
                      ..+.+...|...+++....     +..+.|..+|++..+.. +-....+..+..++....        +...+.+..+..
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            3456788898888875442     23778999999999873 333455555444443221        123344444443


Q ss_pred             hhc-CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          268 ENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       268 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      ... ....++..|..+.-.....|++++|...++++.+.  .|+...|..+...+...|+.++|.+.++++..++|..+.
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            332 12235567777777777789999999999999986  468889999999999999999999999999999998764

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.25  E-value=6.2e-05  Score=60.06  Aligned_cols=128  Identities=9%  Similarity=0.051  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH
Q 018743           68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG-YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY  146 (351)
Q Consensus        68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  146 (351)
                      |..+++...+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+.  ++.+...|...+..+
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence            4444444444444455555555444322 1222333322222 11123333355555554444  233444444444444


Q ss_pred             hcCCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          147 GNSGNIEKMEKWYNEFNLMGVKAD---IQTLNILTKSYGRAGMYDKMRSVMDFMQK  199 (351)
Q Consensus       147 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  199 (351)
                      ...++.+.|..+|++.... +.++   ...|...+..-.+.|+.+.+.++.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4555555555555544432 1111   12444455555555555555555444444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.25  E-value=4.2e-05  Score=49.85  Aligned_cols=94  Identities=20%  Similarity=0.179  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ  288 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (351)
                      +..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++...+..+. +...+..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence            3345555666677777777777666543 334455666666666677777777777776655433 34566666667777


Q ss_pred             cCCHHHHHHHHHHHHh
Q 018743          289 AGDVEKMGELFLTMKE  304 (351)
Q Consensus       289 ~g~~~~a~~~~~~~~~  304 (351)
                      .|++++|...+....+
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            7777777777766654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.23  E-value=9.2e-05  Score=61.29  Aligned_cols=101  Identities=11%  Similarity=-0.104  Sum_probs=85.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 018743          176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG  255 (351)
Q Consensus       176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  255 (351)
                      .-...+...|+++.|...|++....... +...|..+..++...|++++|+..+++++... +.+...|..+..+|...|
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            3456677889999999999999887554 67888888999999999999999999999875 557788999999999999


Q ss_pred             CHhHHHHHHHHhhhcCCccCHHhH
Q 018743          256 LIMKVDSILRQVENSDVILDTPFF  279 (351)
Q Consensus       256 ~~~~a~~~~~~~~~~~~~~~~~~~  279 (351)
                      ++++|...|++..+.++. +....
T Consensus        85 ~~~eA~~~~~~al~l~P~-~~~~~  107 (356)
T PLN03088         85 EYQTAKAALEKGASLAPG-DSRFT  107 (356)
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHH
Confidence            999999999999987654 44433

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.23  E-value=6.7e-05  Score=59.85  Aligned_cols=143  Identities=11%  Similarity=0.069  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 018743          172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK-AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA  250 (351)
Q Consensus       172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  250 (351)
                      .+|..++....+.+..+.|..+|.+..+.+. .+...|-.....-.. .++.+.|..+|+...+. ++.+...|...+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            4677788888888888888899988875432 234444444444233 56677788999888876 46677788888888


Q ss_pred             HHhcCCHhHHHHHHHHhhhcCCcc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          251 YSKAGLIMKVDSILRQVENSDVIL---DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ  319 (351)
Q Consensus       251 ~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  319 (351)
                      +...|+.+.|..+|++.... +.+   ....|...+..-.+.|+.+.+.++.+++.+.  .|+...+..++.
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~  148 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD  148 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence            88888888898888888765 221   2347888888888888888888888888875  444344444433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.22  E-value=8.9e-06  Score=48.90  Aligned_cols=62  Identities=11%  Similarity=0.124  Sum_probs=46.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       282 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      +...+.+.|++++|.+.|+.+.+.. +-+...+..+..++...|++++|...++++++..|..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            4556778888888888888888763 3356677788888888888888888888888777764

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=0.00022  Score=55.46  Aligned_cols=99  Identities=12%  Similarity=0.116  Sum_probs=68.3

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---CHhHHHHHHHHhhhcCCccCHHhHHH
Q 018743          205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSDVILDTPFFNC  281 (351)
Q Consensus       205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~  281 (351)
                      |...|-.|...|...|+.+.|..-|.+..+.. ++++..+..+..++....   ...++..+|+++.+.++. |+.....
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l  232 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL  232 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence            66777777777777777777777777777653 556666666666555432   345577777777776655 6667777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          282 IISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       282 l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      |...+...|++.+|...|+.|.+.
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhc
Confidence            777777777777777777777765

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.18  E-value=0.00029  Score=51.88  Aligned_cols=84  Identities=14%  Similarity=0.058  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 018743          173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA  250 (351)
Q Consensus       173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  250 (351)
                      .+..+...+...|++++|...|++.......+.  ...+..+...+...|++++|...+.+..+.. +-+...+..+...
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~  115 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            344444455555555555555555544322111  2344444455555555555555555554432 2233334444444


Q ss_pred             HHhcCCH
Q 018743          251 YSKAGLI  257 (351)
Q Consensus       251 ~~~~g~~  257 (351)
                      +...|+.
T Consensus       116 ~~~~g~~  122 (172)
T PRK02603        116 YHKRGEK  122 (172)
T ss_pred             HHHcCCh
Confidence            4444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.17  E-value=1.7e-05  Score=48.36  Aligned_cols=67  Identities=22%  Similarity=0.182  Sum_probs=54.4

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcc
Q 018743          275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLENKMIAMKE  342 (351)
Q Consensus       275 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~  342 (351)
                      ++..|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.+++.++.+|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            45678888888888999999999999888763 335677888888888888 68999999998888765

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.17  E-value=0.00023  Score=52.48  Aligned_cols=85  Identities=16%  Similarity=0.132  Sum_probs=42.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY  286 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  286 (351)
                      +..+...+...|++++|...+++..+....+.  ...+..+...+.+.|++++|...+++..+..+. +...+..+..++
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~  116 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            44444555555666666666665554321111  234555555555556666666655555554333 344444455555


Q ss_pred             HhcCCHHH
Q 018743          287 GQAGDVEK  294 (351)
Q Consensus       287 ~~~g~~~~  294 (351)
                      ...|+...
T Consensus       117 ~~~g~~~~  124 (172)
T PRK02603        117 HKRGEKAE  124 (172)
T ss_pred             HHcCChHh
Confidence            55544333

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.14  E-value=7.1e-05  Score=48.80  Aligned_cols=72  Identities=4%  Similarity=0.203  Sum_probs=38.7

Q ss_pred             HhcCCHhHHHHHHHHhhhcCC-ccCHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018743          252 SKAGLIMKVDSILRQVENSDV-ILDTPFFNCIISAYGQAG--------DVEKMGELFLTMKERHCVPDNITFATMIQAYN  322 (351)
Q Consensus       252 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  322 (351)
                      ...+++.....+|+.+.+.++ .|+..+|+.++.+.++..        +.-..+.+|+.|+..+++|+..+|+.++..+.
T Consensus        36 ~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll  115 (120)
T PF08579_consen   36 FENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL  115 (120)
T ss_pred             HhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence            333444444444444444444 444444444444433321        23445566667776667777777777766654


Q ss_pred             H
Q 018743          323 A  323 (351)
Q Consensus       323 ~  323 (351)
                      +
T Consensus       116 k  116 (120)
T PF08579_consen  116 K  116 (120)
T ss_pred             H
Confidence            4

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.13  E-value=0.00013  Score=53.54  Aligned_cols=64  Identities=13%  Similarity=-0.056  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743           66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus        66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                      ..|..+...+...|++++|...|++.......+  ...++..+..++...|++++|+..+++....
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            334444555555566666666665554432111  1234555555566666666666666655543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.12  E-value=0.0023  Score=49.88  Aligned_cols=58  Identities=14%  Similarity=0.170  Sum_probs=44.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 018743          281 CIISAYGQAGDVEKMGELFLTMKER--HCVPDNITFATMIQAYNALGMTEAAQNLENKMI  338 (351)
Q Consensus       281 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  338 (351)
                      .+.+.|.+.|.+..|+.-++.+++.  +.+........++.+|...|..++|......+.
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            4567788899999999999998865  122334566788889999999999988776553

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.10  E-value=7.8e-05  Score=57.57  Aligned_cols=92  Identities=14%  Similarity=0.007  Sum_probs=66.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhH
Q 018743          180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK  259 (351)
Q Consensus       180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  259 (351)
                      -+.+.+++.+|+..|.+.++..+. |.+-|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence            355667788888888887776443 66777777788888888888887777776653 3345678888888888888888


Q ss_pred             HHHHHHHhhhcCCc
Q 018743          260 VDSILRQVENSDVI  273 (351)
Q Consensus       260 a~~~~~~~~~~~~~  273 (351)
                      |...|++..+..+.
T Consensus       168 A~~aykKaLeldP~  181 (304)
T KOG0553|consen  168 AIEAYKKALELDPD  181 (304)
T ss_pred             HHHHHHhhhccCCC
Confidence            88888877766443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.10  E-value=1.2e-05  Score=48.89  Aligned_cols=63  Identities=24%  Similarity=0.231  Sum_probs=46.5

Q ss_pred             ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHH
Q 018743            5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL   71 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   71 (351)
                      .+.|++++|+.+|+.+.+..+. +..++..+..++.+.|++++|.++++++...   .|+...|..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l   64 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL   64 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence            4578888888888888877655 7778888888888888888888888888774   4554444443

...

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.09  E-value=0.00011  Score=48.00  Aligned_cols=68  Identities=18%  Similarity=0.381  Sum_probs=32.8

Q ss_pred             CCHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 018743          185 GMYDKMRSVMDFMQKRFF-FPTVVTYNIVIETFGKAG--------HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS  252 (351)
Q Consensus       185 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  252 (351)
                      +++...-.+|+.+.+.++ .|+..+|+.++.+..+..        +.-..+.+|++|...+++|+..+|+.++..+.
T Consensus        39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll  115 (120)
T PF08579_consen   39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL  115 (120)
T ss_pred             cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence            444444444444444444 444444444444433321        22334455555555555666666665555543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.09  E-value=4e-05  Score=59.13  Aligned_cols=101  Identities=19%  Similarity=0.212  Sum_probs=83.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHH
Q 018743          215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK  294 (351)
Q Consensus       215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  294 (351)
                      -..+.+++++|+..|.+.++.. +-|...|..=..+|.+.|.++.|++-.+..+..++. ...+|..|..+|...|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence            4567889999999999999874 557788888889999999999999999888887665 57788999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          295 MGELFLTMKERHCVPDNITFATMIQ  319 (351)
Q Consensus       295 a~~~~~~~~~~~~~p~~~~~~~l~~  319 (351)
                      |++.|++.++  +.|+..+|..=+.
T Consensus       168 A~~aykKaLe--ldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  168 AIEAYKKALE--LDPDNESYKSNLK  190 (304)
T ss_pred             HHHHHHhhhc--cCCCcHHHHHHHH
Confidence            9999999887  5777776654443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.08  E-value=0.0017  Score=46.74  Aligned_cols=133  Identities=8%  Similarity=0.115  Sum_probs=92.5

Q ss_pred             CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-CCHHHHH
Q 018743           97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-ADIQTLN  175 (351)
Q Consensus        97 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~  175 (351)
                      .|+...-..|..+..+.|+..+|...|++...- -...|......+.++....+++..|...++.+.+.... .++....
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            567777777888888888888888888887543 35667777777888888888888888888887664311 1233455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743          176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM  232 (351)
Q Consensus       176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  232 (351)
                      .+.+.+...|.+.+|...|+.....  .|+...-......+.+.|+.+++..-+..+
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            6778888888888888888888775  344444334445566777666655444433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=0.00037  Score=54.23  Aligned_cols=115  Identities=10%  Similarity=0.056  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHh---cCCHHHHHHH
Q 018743           11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK---FHRFDLIEKI   87 (351)
Q Consensus        11 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~   87 (351)
                      +....-++.-++.++. |...|-.|...|...|+++.|..-|.+..+..|  +|...+..+..++..   .....++..+
T Consensus       139 ~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         139 EALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            3333334444444444 666666666666666666666666666665442  333334444443322   2234556666


Q ss_pred             HHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743           88 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                      |+++.... +-|+.+...|...+...|++.+|...|+.|.+.
T Consensus       216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            66666554 345555555566666666666666666666654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.07  E-value=0.0002  Score=52.61  Aligned_cols=93  Identities=14%  Similarity=0.059  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743          208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP--NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA  285 (351)
Q Consensus       208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  285 (351)
                      .|..+...+...|++++|...+++.......+  ...++..+...+...|++++|...++......+. ....+..+...
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i  115 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence            34444445555566666666655554432111  1234555555555666666666666555544322 23334444444


Q ss_pred             HH-------hcCCHHHHHHHHHH
Q 018743          286 YG-------QAGDVEKMGELFLT  301 (351)
Q Consensus       286 ~~-------~~g~~~~a~~~~~~  301 (351)
                      +.       ..|+++.|...+++
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHHHH
Confidence            44       55555544444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.04  E-value=0.00056  Score=54.84  Aligned_cols=130  Identities=15%  Similarity=0.184  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCcc--HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-----cCH
Q 018743          209 YNIVIETFGKA-GHIEKMEEYFKKMKHR----GMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-----LDT  276 (351)
Q Consensus       209 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~  276 (351)
                      +..+...|... |+++.|++.|++..+.    + .+.  ...+..+...+.+.|++++|..+|+++......     ++.
T Consensus       117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~  195 (282)
T PF14938_consen  117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA  195 (282)
T ss_dssp             HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence            33444555555 6777777777765432    2 111  234556667777777888888777776543221     111


Q ss_pred             H-hHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCC--HHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 018743          277 P-FFNCIISAYGQAGDVEKMGELFLTMKERH--CVPD--NITFATMIQAYNAL--GMTEAAQNLENKMIA  339 (351)
Q Consensus       277 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~  339 (351)
                      . .+-..+-++...||...|.+.+++.....  +..+  ......|+.++-..  ..++.|+.-|+.+.+
T Consensus       196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~  265 (282)
T PF14938_consen  196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR  265 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence            1 22233335556677777777777776442  2222  23445556665432  335566555554433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.98  E-value=0.0044  Score=48.30  Aligned_cols=176  Identities=11%  Similarity=0.100  Sum_probs=90.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH---HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743           71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY---NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG  147 (351)
Q Consensus        71 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  147 (351)
                      ....+...|++++|...|+.+...-.. +....   -.++.++.+.+++++|...+++.++..+-.|+.. +...+.+.+
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a~Y~~g~~  115 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVLYMRGLT  115 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HHHHHHHHh
Confidence            344456678888888888888775422 22222   3456777788888888888888877654344332 222222222


Q ss_pred             c--CC---------------CH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 018743          148 N--SG---------------NI---EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV  207 (351)
Q Consensus       148 ~--~~---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  207 (351)
                      .  .+               |.   .+|+..|+.++               .-|-...-..+|...+..+...    -..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~----la~  176 (243)
T PRK10866        116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR----LAK  176 (243)
T ss_pred             hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH----HHH
Confidence            1  10               11   12222333322               2222222233343333333221    000


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 018743          208 TYNIVIETFGKAGHIEKMEEYFKKMKHR--GMKPNSITYCSLVSAYSKAGLIMKVDSILRQV  267 (351)
Q Consensus       208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  267 (351)
                      .--.+.+.|.+.|.+..|..-++.+++.  +.+........++.+|...|..++|..+...+
T Consensus       177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            1113455566667777777666666654  22223445556666666677776666655544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=0.002  Score=52.29  Aligned_cols=258  Identities=12%  Similarity=-0.035  Sum_probs=129.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHH
Q 018743           74 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE  153 (351)
Q Consensus        74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  153 (351)
                      .+.+..++..|+..+...++.. +.+..-|..-+..+...++++++.--.+.-++..  +.........-+++...++..
T Consensus        58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~~a~~~~i  134 (486)
T KOG0550|consen   58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCHLALSDLI  134 (486)
T ss_pred             hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhhhhhHHHH
Confidence            3455566666777777666664 3345555555555666666666655554443321  111112222222222333333


Q ss_pred             HHHHHHH---------------HHHhcC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH--
Q 018743          154 KMEKWYN---------------EFNLMG-VKADIQTLNIL-TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE--  214 (351)
Q Consensus       154 ~a~~~~~---------------~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--  214 (351)
                      +|.+.++               ...... -+|.-.++..+ ..++.-.|+++.|..+--.+.+...   ...+...++  
T Consensus       135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~  211 (486)
T KOG0550|consen  135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGL  211 (486)
T ss_pred             HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhccc
Confidence            3332222               111111 11222333322 2345556777777776665555421   112222222  


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCccHHHH-------------HHHHHHHHhcCCHhHHHHHHHHhhhcC---CccCHHh
Q 018743          215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITY-------------CSLVSAYSKAGLIMKVDSILRQVENSD---VILDTPF  278 (351)
Q Consensus       215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~  278 (351)
                      ++...++.+.+...|++.+..  .|+...-             ..=..-..+.|.+..|.+.+.+.+..+   ..|+...
T Consensus       212 ~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl  289 (486)
T KOG0550|consen  212 CLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL  289 (486)
T ss_pred             ccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence            333456677777777766654  2332211             111122345677777777777766543   3445555


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT---FATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       279 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      |.....+..+.|+..+|+.--++..+.    |+..   |..-..++...++|++|.+-+++..+....
T Consensus       290 Y~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  290 YGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            666666677777777777777766653    3222   222233455667777777777777665443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.97  E-value=0.0017  Score=56.45  Aligned_cols=63  Identities=10%  Similarity=0.043  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743          171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR  235 (351)
Q Consensus       171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  235 (351)
                      ...+..+.-.....|++++|...+++....+  |+...|..+...+...|+.++|.+.+++....
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3444444444444555555555555555543  34555555555555556666665555555543

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.96  E-value=1.4e-05  Score=39.74  Aligned_cols=29  Identities=38%  Similarity=0.603  Sum_probs=15.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018743          278 FFNCIISAYGQAGDVEKMGELFLTMKERH  306 (351)
Q Consensus       278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  306 (351)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            34555555555555555555555555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.95  E-value=0.0076  Score=49.77  Aligned_cols=132  Identities=17%  Similarity=0.210  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHH
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG  287 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  287 (351)
                      |...+....+..-.+.|..+|.++.+.+ +.++...+++++..++ .|+...|..+|+.-...-.. ++...+..+..+.
T Consensus       400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~fLi  477 (660)
T COG5107         400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLLFLI  477 (660)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHHHHH
Confidence            4445555555666777777777777766 4566667777776554 46666777777765443222 2233345556666


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          288 QAGDVEKMGELFLTMKERHCVPD--NITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       288 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      ..++-..|..+|+..++. +..+  ...|..++.--..-|+...+..+-+.|...-|+
T Consensus       478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ  534 (660)
T COG5107         478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ  534 (660)
T ss_pred             HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence            777777777777755543 2222  456777776666677776666666666554443

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.94  E-value=1.5e-05  Score=39.60  Aligned_cols=29  Identities=41%  Similarity=0.722  Sum_probs=15.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743          208 TYNIVIETFGKAGHIEKMEEYFKKMKHRG  236 (351)
Q Consensus       208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  236 (351)
                      +|+.++.+|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.93  E-value=0.00054  Score=53.78  Aligned_cols=91  Identities=7%  Similarity=-0.087  Sum_probs=39.7

Q ss_pred             hcCCHhHHHHHHHHhhhcCCccC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHH
Q 018743          253 KAGLIMKVDSILRQVENSDVILD--TPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNITFATMIQAYNALGMTE  328 (351)
Q Consensus       253 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~  328 (351)
                      +.|++++|...|+.+.+..+...  +..+..+..+|...|++++|...|+.+.+.-  -+.....+..+...+...|+.+
T Consensus       155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~  234 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA  234 (263)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence            34455555555555444322210  1233444445555555555555555554320  0011223333344444555555


Q ss_pred             HHHHHHHHHHHhccc
Q 018743          329 AAQNLENKMIAMKEN  343 (351)
Q Consensus       329 ~A~~~~~~~~~~~~~  343 (351)
                      +|...++++++..|.
T Consensus       235 ~A~~~~~~vi~~yP~  249 (263)
T PRK10803        235 KAKAVYQQVIKKYPG  249 (263)
T ss_pred             HHHHHHHHHHHHCcC
Confidence            555555555554443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.91  E-value=6.4e-05  Score=45.58  Aligned_cols=50  Identities=12%  Similarity=0.109  Sum_probs=21.8

Q ss_pred             cCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       254 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      .|++++|..+|+.+.+..+. +......++.+|.+.|++++|.++++++..
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444444444444333 344444444444444444444444444443

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.90  E-value=0.0013  Score=52.77  Aligned_cols=123  Identities=14%  Similarity=0.106  Sum_probs=77.9

Q ss_pred             CHHHHHHHHHHHHH----cCCCcc--HHHHHHHHHHHHhc-CCHhHHHHHHHHhhhc----CC-ccCHHhHHHHHHHHHh
Q 018743          221 HIEKMEEYFKKMKH----RGMKPN--SITYCSLVSAYSKA-GLIMKVDSILRQVENS----DV-ILDTPFFNCIISAYGQ  288 (351)
Q Consensus       221 ~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~  288 (351)
                      ++++|+..+++..+    .| .|+  ...+..+...|... |++++|...|++..+.    +. ..-..++..+...+.+
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence            55555555555432    22 222  23455666677777 8999999999886542    21 1123456778889999


Q ss_pred             cCCHHHHHHHHHHHHhcCCC-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          289 AGDVEKMGELFLTMKERHCV-----PDNI-TFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       289 ~g~~~~a~~~~~~~~~~~~~-----p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      .|++++|.++|++.......     ++.. .+...+-++...|+...|.+.+++.....|.-
T Consensus       168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            99999999999998764322     1222 33344556778899999999999988776643

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.89  E-value=0.0001  Score=44.25  Aligned_cols=58  Identities=14%  Similarity=0.035  Sum_probs=37.4

Q ss_pred             HHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       247 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      +...+...|++++|...|+.+.+..+. +...+..+..++...|++++|...|+++.+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344566667777777777777666544 5666666666777777777777777766653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.87  E-value=0.015  Score=50.80  Aligned_cols=280  Identities=14%  Similarity=0.102  Sum_probs=134.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 018743            8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI   87 (351)
Q Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   87 (351)
                      |+|++|.++|-++.+++         ..+....+.|+|-+..++++.--.......-...|+.+...+.....|++|.++
T Consensus       748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y  818 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY  818 (1189)
T ss_pred             cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666665554432         224455566666666666553221100011134566666666666666666666


Q ss_pred             HHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 018743           88 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV  167 (351)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  167 (351)
                      +..-..      .   ...+.++.+..++++-..+...+      +.+....-.+..++.+.|.-++|.+.+-+..    
T Consensus       819 Y~~~~~------~---e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----  879 (1189)
T KOG2041|consen  819 YSYCGD------T---ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----  879 (1189)
T ss_pred             HHhccc------h---HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhcc----
Confidence            654321      1   23455555555555544444433      3344445556666667777666666554321    


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY--------------NIVIETFGKAGHIEKMEEYFKKMK  233 (351)
Q Consensus       168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~  233 (351)
                      .|     ..-+..|...+++.+|.++-+...-    |...+.              --.|..+.+.|+.-.|.+++.+|.
T Consensus       880 ~p-----kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma  950 (1189)
T KOG2041|consen  880 LP-----KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA  950 (1189)
T ss_pred             Cc-----HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence            11     1233445555556555555433211    111110              112334455666666666666664


Q ss_pred             H----cCCCccHH----HHHHH-HHHH----------HhcCCHhHHHHHHHHhh--------hcCCc-cCHHhHHHHHHH
Q 018743          234 H----RGMKPNSI----TYCSL-VSAY----------SKAGLIMKVDSILRQVE--------NSDVI-LDTPFFNCIISA  285 (351)
Q Consensus       234 ~----~~~~~~~~----~~~~l-~~~~----------~~~g~~~~a~~~~~~~~--------~~~~~-~~~~~~~~l~~~  285 (351)
                      +    ++.+|-..    ...++ +.-+          -..|..++|..+++...        +.-.. .....|..|.+-
T Consensus       951 e~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQr 1030 (1189)
T KOG2041|consen  951 EREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQR 1030 (1189)
T ss_pred             HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHH
Confidence            3    23332211    11111 1111          12355555665444322        10000 122344455555


Q ss_pred             HHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHc
Q 018743          286 YGQAGDVEKMGELFLTMKER-HCVPDNITFATMIQAYNAL  324 (351)
Q Consensus       286 ~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~  324 (351)
                      -...|.++.|++.--.+.+. .+-|....|..+.-+.+..
T Consensus      1031 ql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ 1070 (1189)
T KOG2041|consen 1031 QLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAV 1070 (1189)
T ss_pred             HHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh
Confidence            66678888888766555533 3556667777665544443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.87  E-value=0.0027  Score=43.06  Aligned_cols=92  Identities=13%  Similarity=0.088  Sum_probs=53.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc--cCHHhHHHHHHHHH
Q 018743          212 VIETFGKAGHIEKMEEYFKKMKHRGMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI--LDTPFFNCIISAYG  287 (351)
Q Consensus       212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~  287 (351)
                      +..++-..|+.++|+.+|++....|....  ...+..+..++...|++++|..++++.....+.  .+......+.-++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            34455566777777777777776664443  234555666667777777777777766654222  01122222334566


Q ss_pred             hcCCHHHHHHHHHHHH
Q 018743          288 QAGDVEKMGELFLTMK  303 (351)
Q Consensus       288 ~~g~~~~a~~~~~~~~  303 (351)
                      ..|+.++|++.+-...
T Consensus        87 ~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   87 NLGRPKEALEWLLEAL  102 (120)
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            6677777777665544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.84  E-value=0.0017  Score=52.81  Aligned_cols=137  Identities=12%  Similarity=0.031  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-ccHHHHHHHHHHHHhcCCHhHHHHHHHHhh----hcCCc-cCHH
Q 018743          208 TYNIVIETFGKAGHIEKMEEYFKKMK----HRGMK-PNSITYCSLVSAYSKAGLIMKVDSILRQVE----NSDVI-LDTP  277 (351)
Q Consensus       208 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~  277 (351)
                      .|..+...|.-.|+++.|+..-+.-+    +.|-+ .....+..+..++.-.|+++.|.+.|+...    +.|-. ....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            34455555555667777766544321    22211 122455666777777777777777766532    22111 1223


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHh----c-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          278 FFNCIISAYGQAGDVEKMGELFLTMKE----R-HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      +.-+|...|.-..++++|+.++.+-..    . ...-....+.+|..+|...|..++|+.+.+..++...+.
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev  348 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEV  348 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            344566666666777777777665321    1 112245567777777777787777777777666554443

>PRK15331 chaperone protein SicA; Provisional

Probab=97.84  E-value=0.0019  Score=45.88  Aligned_cols=87  Identities=13%  Similarity=-0.011  Sum_probs=54.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHH
Q 018743          216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM  295 (351)
Q Consensus       216 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  295 (351)
                      +...|++++|..+|.-+.-.+ +.+..-+..|..++-..+++++|...|......+.. |+..+-....++...|+.+.|
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A  124 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA  124 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence            345677777777777666554 335555666666666667777777777665544332 344444566677777777777


Q ss_pred             HHHHHHHHh
Q 018743          296 GELFLTMKE  304 (351)
Q Consensus       296 ~~~~~~~~~  304 (351)
                      ...|...++
T Consensus       125 ~~~f~~a~~  133 (165)
T PRK15331        125 RQCFELVNE  133 (165)
T ss_pred             HHHHHHHHh
Confidence            777776665

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.81  E-value=0.012  Score=47.77  Aligned_cols=51  Identities=4%  Similarity=-0.057  Sum_probs=25.7

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 018743           77 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE  128 (351)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  128 (351)
                      +.|+.+.|.++-++..... +.-...+...+...+..|+|+.|+++++.-..
T Consensus       166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            4455555555555544432 22334445555555555555555555555443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.80  E-value=0.0022  Score=43.46  Aligned_cols=55  Identities=7%  Similarity=0.080  Sum_probs=26.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 018743           74 SCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVE  128 (351)
Q Consensus        74 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  128 (351)
                      ++-..|+.++|+.+|++....|+...  ...+..+...+...|++++|..++++...
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34445555555555555555443322  22333444455555555555555555544

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.80  E-value=0.0011  Score=49.19  Aligned_cols=48  Identities=15%  Similarity=0.317  Sum_probs=26.3

Q ss_pred             CHHHHHHHHHHHhcc-----CChHHHHHHHHHhhccCCCCccHHHHHHHHHHHH
Q 018743           28 SVDVYTALVSAYGQS-----GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT   76 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~   76 (351)
                      +-.+|..++..+.+.     |..+=....+..|.+ .|+.-|..+|+.|++.+=
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFP   98 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFP   98 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCC
Confidence            555555555555432     444444555555555 566666666666665543

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.77  E-value=0.00017  Score=44.39  Aligned_cols=59  Identities=19%  Similarity=0.133  Sum_probs=30.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       285 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      .|.+.+++++|.++++++...+ +.+...+......+.+.|++++|.+.+++.++..|++
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence            4455555555555555555441 2234444455555555555555555555555555543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.76  E-value=0.023  Score=49.72  Aligned_cols=183  Identities=13%  Similarity=0.106  Sum_probs=105.5

Q ss_pred             CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 018743           26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL-------IKSCTKFHRFDLIEKILAEMSYLGIEC   98 (351)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~   98 (351)
                      .|.+..|..+.......-.++.|...|-+.....|++.--. ...+       ...-+-.|.+++|++++-+|.+..   
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence            67899999999988888889999998888776555432111 1111       111223578889988888776543   


Q ss_pred             CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHhcCCCHHHHHHHHHHHH-----------
Q 018743           99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNSGNIEKMEKWYNEFN-----------  163 (351)
Q Consensus        99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------  163 (351)
                            ..+..+.+.|+|-.+.++++.-    |...|    ..+|+.+...+.....|++|.++|....           
T Consensus       765 ------LAielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~  834 (1189)
T KOG2041|consen  765 ------LAIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYR  834 (1189)
T ss_pred             ------hhHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHH
Confidence                  2345566667776665555432    11111    2245555555555555555555444321           


Q ss_pred             ----------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743          164 ----------LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK  231 (351)
Q Consensus       164 ----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  231 (351)
                                ...++.+....-.+..++...|.-++|.+.+-+...    |     ...+..|...++|.+|.++-+.
T Consensus       835 le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  835 LELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQR  903 (1189)
T ss_pred             HHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence                      112344555556666777777777777665543211    1     1345566666777777766554

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.75  E-value=0.0021  Score=47.74  Aligned_cols=50  Identities=24%  Similarity=0.422  Sum_probs=39.6

Q ss_pred             CCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 018743          204 PTVVTYNIVIETFGKA-----GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK  253 (351)
Q Consensus       204 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  253 (351)
                      .+..+|..++..+.+.     |..+=....++.|.+.|+.-|..+|+.|+..+=+
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK   99 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK   99 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence            4778888888888653     6677777778888888888888888888887764

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.73  E-value=0.00033  Score=42.52  Aligned_cols=60  Identities=18%  Similarity=0.139  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 018743          243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG-DVEKMGELFLTMK  303 (351)
Q Consensus       243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~  303 (351)
                      +|..+...+...|++++|+..|++..+.++. +...|..+..++...| ++++|++.+++.+
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            3444444444444444444444444444333 3344444444444444 3444444444443

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.71  E-value=0.0011  Score=53.87  Aligned_cols=266  Identities=15%  Similarity=0.049  Sum_probs=158.2

Q ss_pred             HHHhccCChHHHHHHHHHhhccCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHH--HH--cCC-CCCHhHHHHHH
Q 018743           37 SAYGQSGLLDEAFSTINDMKSVSDCKPD----VYTYSILIKSCTKFHRFDLIEKILAEM--SY--LGI-ECSAVTYNTII  107 (351)
Q Consensus        37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~~~-~~~~~~~~~l~  107 (351)
                      .-+++.|+....+.+|+...+. | .-|    ...|..|.++|.-.+++++|+++...=  ..  .|- .-.......|.
T Consensus        25 ERLck~gdcraGv~ff~aA~qv-G-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG  102 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQV-G-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG  102 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHh-c-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence            3577888888888888888873 3 223    234666677777777888887765321  10  110 01222334455


Q ss_pred             HHHhhcCChHHHHHHHHHHH----hcCCCCCCHhHHHHHHHHHhcCCC--------------------HHHHHHHHHHHH
Q 018743          108 DGYGKAKKFEEMESSFSAMV----ESGGCHPDIFTLNSMISAYGNSGN--------------------IEKMEKWYNEFN  163 (351)
Q Consensus       108 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~  163 (351)
                      ..+.-.|.+++|.-...+-+    +.+.-.....++..+...|...|+                    ++.|.++|.+-.
T Consensus       103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL  182 (639)
T KOG1130|consen  103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL  182 (639)
T ss_pred             chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence            55566677777665433221    111111223345556666655442                    334455554322


Q ss_pred             h----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          164 L----MGV-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQ----KRFF-FPTVVTYNIVIETFGKAGHIEKMEEYFKKMK  233 (351)
Q Consensus       164 ~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  233 (351)
                      +    .|- -.....|..|...|.-.|+++.|+...+.-.    +-|- ......++.+..++.-.|+++.|.+.|+...
T Consensus       183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl  262 (639)
T KOG1130|consen  183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL  262 (639)
T ss_pred             HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence            1    110 0112345556666667789999988765422    2121 1234667888889999999999999998754


Q ss_pred             H----cCC-CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh----c-CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          234 H----RGM-KPNSITYCSLVSAYSKAGLIMKVDSILRQVEN----S-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMK  303 (351)
Q Consensus       234 ~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  303 (351)
                      .    .|- .....+.-+|..+|.-..++++|+.++.+-..    . +..-....+.+|..+|...|..++|+.+.+.-.
T Consensus       263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3    221 22345667788888888889999988776321    1 111245678889999999999999988877655


Q ss_pred             h
Q 018743          304 E  304 (351)
Q Consensus       304 ~  304 (351)
                      +
T Consensus       343 ~  343 (639)
T KOG1130|consen  343 R  343 (639)
T ss_pred             H
Confidence            3

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.59  E-value=0.014  Score=42.29  Aligned_cols=132  Identities=12%  Similarity=0.076  Sum_probs=98.5

Q ss_pred             CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHhH
Q 018743          133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF---FFPTVVTY  209 (351)
Q Consensus       133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~  209 (351)
                      .|+..--..+..+....|+..+|...|++....-...|......+.++....+++..|...++.+.+..   -.||  +.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~  163 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH  163 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence            566666677888888999999999999988765556777888888888888999999999998877653   2233  34


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743          210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE  268 (351)
Q Consensus       210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  268 (351)
                      -.+.+.+...|+++.|..-|+.....  -|+...-......+.+.|+.+++..-+..+.
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            45678888889999999999888875  5666655555666677787776665444433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.56  E-value=0.0017  Score=46.37  Aligned_cols=71  Identities=17%  Similarity=0.147  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCCCCHHHH
Q 018743          243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK-----ERHCVPDNITF  314 (351)
Q Consensus       243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~  314 (351)
                      ....++..+...|++++|..+.+.+....+. +...|..++.++...|+..+|.+.|+++.     +.|+.|++.+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            3445555666677777777777777766655 66677777777777777777777777654     34666666543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.56  E-value=0.031  Score=45.46  Aligned_cols=105  Identities=14%  Similarity=0.183  Sum_probs=54.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 018743          175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA  254 (351)
Q Consensus       175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  254 (351)
                      +..+.-+...|+...|.++-.+.    -.|+...|...+.+++..++|++-..+...   .   -++..|..++.+|.+.
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~  250 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY  250 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence            33344445555555555543333    124566666666666666666655554321   1   1224556666666666


Q ss_pred             CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743          255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF  299 (351)
Q Consensus       255 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  299 (351)
                      |+..+|..++..+.          +..-+..|.+.|++.+|.+.-
T Consensus       251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A  285 (319)
T PF04840_consen  251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA  285 (319)
T ss_pred             CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence            66666665555411          123444555666666655443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.54  E-value=0.00055  Score=42.10  Aligned_cols=55  Identities=9%  Similarity=0.027  Sum_probs=30.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743           74 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus        74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                      .+.+.++++.|.++++.+...+ |.+...+.....++.+.|++++|.+.|+...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3445555555555555555554 335555555555555555555555555555544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.024  Score=43.55  Aligned_cols=143  Identities=10%  Similarity=0.025  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH----
Q 018743          173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV----  248 (351)
Q Consensus       173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----  248 (351)
                      +.+.++.++.-.+.+.-...++.+..+...+.++...+.+.+.-.+.|+.+.|...|++..+..-..|..+.+.++    
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            3456677777788888888889998888777788888999999999999999999999877554344444444333    


Q ss_pred             -HHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743          249 -SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI  318 (351)
Q Consensus       249 -~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  318 (351)
                       ..+.-.+++..|...+.++...+.. ++...|.-.-+....|+..+|++..+.|.+.  .|.+.+-++++
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~  326 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL  326 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence             3455667888888888888877665 6666666666677789999999999999875  45555544433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.48  E-value=0.0048  Score=48.58  Aligned_cols=97  Identities=11%  Similarity=0.069  Sum_probs=60.5

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc--cCHHhHH
Q 018743          207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN----SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI--LDTPFFN  280 (351)
Q Consensus       207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~  280 (351)
                      ..|...+....+.|++++|...|+.+.+..  |+    ...+..+...|...|++++|...|+.+.+..+.  .....+.
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            334444444455677777777777777652  22    245666777777777777777777777654222  1233444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          281 CIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       281 ~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      .+...+...|+.++|..+|+.+++.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4556666777777777777777764

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.016  Score=45.36  Aligned_cols=155  Identities=11%  Similarity=0.028  Sum_probs=93.6

Q ss_pred             HHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC
Q 018743           36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK  115 (351)
Q Consensus        36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  115 (351)
                      .......|++..|..+|.......  +-+...-..+..++...|+.+.|..++..+...--.........-+..+.+...
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~  218 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA  218 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence            445667788888888887777643  334455666777788888888888888876544222222222233455555555


Q ss_pred             hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018743          116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV-KADIQTLNILTKSYGRAGMYDKMRSVM  194 (351)
Q Consensus       116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~  194 (351)
                      ..+...+-.+.-..   +.|...-..+...+...|+.+.|.+.+-.+.+.+. .-|...-..++..+.-.|..+.+...+
T Consensus       219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~  295 (304)
T COG3118         219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY  295 (304)
T ss_pred             CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence            55555555555332   44666666777778888888888776666554321 244556667777777666544444333


Q ss_pred             H
Q 018743          195 D  195 (351)
Q Consensus       195 ~  195 (351)
                      +
T Consensus       296 R  296 (304)
T COG3118         296 R  296 (304)
T ss_pred             H
Confidence            3

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.45  E-value=0.00063  Score=42.50  Aligned_cols=64  Identities=19%  Similarity=0.277  Sum_probs=44.8

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743          277 PFFNCIISAYGQAGDVEKMGELFLTMKER--HCV---PD-NITFATMIQAYNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       277 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  340 (351)
                      .+++.+...|...|++++|+..|++..+.  ...   |+ ..++..+..++...|++++|++++++.++.
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45677777888888888888888876632  011   22 446777778888888888888888887764

...

>PRK15331 chaperone protein SicA; Provisional

Probab=97.44  E-value=0.021  Score=40.70  Aligned_cols=85  Identities=9%  Similarity=0.005  Sum_probs=38.7

Q ss_pred             hcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 018743          253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN  332 (351)
Q Consensus       253 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  332 (351)
                      ..|++++|..+|+-+.-.++. +...+..|..++-..+++++|+..|......+. -|+..+.....++...|+.+.|+.
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence            445555555555544444333 444444444444445555555555544433321 123333334444455555555555


Q ss_pred             HHHHHHH
Q 018743          333 LENKMIA  339 (351)
Q Consensus       333 ~~~~~~~  339 (351)
                      .|+..+.
T Consensus       127 ~f~~a~~  133 (165)
T PRK15331        127 CFELVNE  133 (165)
T ss_pred             HHHHHHh
Confidence            5444443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.44  E-value=0.049  Score=44.90  Aligned_cols=166  Identities=14%  Similarity=0.088  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 018743          138 TLNSMISAYGNSGNIEKMEKWYNEFNLMG---VKADIQTLNILTKSYGR---AGMYDKMRSVMDFMQKRFFFPTVVTYNI  211 (351)
Q Consensus       138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~  211 (351)
                      +...++-+|....+++..+++.+.+....   +..+..+-...+-++.+   .|+.++|..++..+......+++.+|..
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            34455667888899999999999987642   12233333345556666   7899999999988666666778888888


Q ss_pred             HHHHHHh---------cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh----HHHHHHHH----hhhcC---
Q 018743          212 VIETFGK---------AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM----KVDSILRQ----VENSD---  271 (351)
Q Consensus       212 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~~~----~~~~~---  271 (351)
                      +.+.|-.         ....+.|+..|.+.-+.  .|+..+-..++..+...|...    +..++--.    +.+.+   
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~  300 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE  300 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence            8877642         12366777777765554  355444333444444444322    22333311    11222   


Q ss_pred             CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       272 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      ...+--.+..++.+..-.|+.++|.+..++|.+.
T Consensus       301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            1223344556777777788888888888888765

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.43  E-value=0.017  Score=41.18  Aligned_cols=71  Identities=11%  Similarity=0.081  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh-----hcCCccCHHhH
Q 018743          208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE-----NSDVILDTPFF  279 (351)
Q Consensus       208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~  279 (351)
                      ....++..+...|++++|..+...+.... |.+...+..++.++...|+...|.++|+.+.     +.|+.|+..+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            45566777778888999999888888875 6678888888999999999998888888764     46777776553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.42  E-value=0.032  Score=42.34  Aligned_cols=45  Identities=27%  Similarity=0.372  Sum_probs=20.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHcCCHH
Q 018743          282 IISAYGQAGDVEKMGELFLTMKERHCVPDN----ITFATMIQAYNALGMTE  328 (351)
Q Consensus       282 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~  328 (351)
                      +...|.+.|.+..|..-++.+++.  -|+.    .....++.+|.+.|..+
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence            344455555555555555555543  1221    23344445555555544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.41  E-value=0.033  Score=42.29  Aligned_cols=187  Identities=11%  Similarity=0.048  Sum_probs=106.3

Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK  179 (351)
Q Consensus       101 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  179 (351)
                      ...-.....+...|++.+|.+.|+.+.......+ -......++.++.+.|+++.|...++++.+.-......-+...+.
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~   85 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML   85 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence            3344455667788999999999999987632222 223456677888899999999999999876431111122222333


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 018743          180 SYGRAGMYDKMRSVMDFMQKRFF---FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL  256 (351)
Q Consensus       180 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  256 (351)
                      +.+.........     ......   .--...+..++.-|=......+|...+..+...    =...-..+...|.+.|.
T Consensus        86 g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~  156 (203)
T PF13525_consen   86 GLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGK  156 (203)
T ss_dssp             HHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccc
Confidence            222211111111     000000   001345666666666677777777766665542    11122346778999999


Q ss_pred             HhHHHHHHHHhhhcCCc--cCHHhHHHHHHHHHhcCCHHHHH
Q 018743          257 IMKVDSILRQVENSDVI--LDTPFFNCIISAYGQAGDVEKMG  296 (351)
Q Consensus       257 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~  296 (351)
                      +..|..-++.+.+.-+.  ........++.++.+.|..+.+.
T Consensus       157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            99999999998876332  11234567788888888887544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.39  E-value=0.078  Score=46.25  Aligned_cols=90  Identities=14%  Similarity=0.055  Sum_probs=54.1

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCH--------
Q 018743          205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT--------  276 (351)
Q Consensus       205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------  276 (351)
                      +..+...+...+.+...+.-|.++|..|-..         .++++.....+++++|..+-+...+.-  |+.        
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~--~dVy~pyaqwL  814 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFK--DDVYMPYAQWL  814 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcccc--ccccchHHHHh
Confidence            3444444455555566667777777665432         345666777788888888777655431  221        


Q ss_pred             ---HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          277 ---PFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       277 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                         .-|...-.+|.++|+..+|.++++++...
T Consensus       815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence               12344445677777777777777776543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.35  E-value=0.012  Score=40.46  Aligned_cols=56  Identities=13%  Similarity=0.131  Sum_probs=43.9

Q ss_pred             hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHc
Q 018743          269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE-RHCVPDNITFATMIQAYNAL  324 (351)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~  324 (351)
                      .....|+..+..+++.+|+..|++..|+++.+...+ .+++.+..+|..|++-....
T Consensus        45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            345678888899999999999999999999998764 46777788888888754443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.33  E-value=0.0063  Score=41.75  Aligned_cols=53  Identities=4%  Similarity=-0.145  Sum_probs=38.4

Q ss_pred             CCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743           95 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG  147 (351)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  147 (351)
                      ...|+..+..+++.+|+..+++..|+++++.+.+..+++.+..+|..|+.-+.
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            34577777777777777777777777777777777776666777777775443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.20  E-value=0.087  Score=44.55  Aligned_cols=109  Identities=12%  Similarity=0.084  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHH
Q 018743          241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMI  318 (351)
Q Consensus       241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~  318 (351)
                      ..+-..+..++.+.|+.++|.+.++++.+..+. -+..+...|+.++...+.+.++..++.+..+...+.+ ...|+..+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            344456777888999999999999998865433 2445677899999999999999999998765433322 33565544


Q ss_pred             HHHHHcCC---------------HHHHHHHHHHHHHhcccCCCCcc
Q 018743          319 QAYNALGM---------------TEAAQNLENKMIAMKENSGKKLI  349 (351)
Q Consensus       319 ~~~~~~g~---------------~~~A~~~~~~~~~~~~~~~~~~~  349 (351)
                      -.+...++               -..|.+.+.++.+.+|..++-++
T Consensus       339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            33333332               13467888999999988776543

The molecular function of this protein is uncertain.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.18  E-value=0.1  Score=43.14  Aligned_cols=167  Identities=15%  Similarity=0.072  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHhcCCC--CCCHhHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018743          102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGC--HPDIFTLNSMISAYGN---SGNIEKMEKWYNEFNLMGVKADIQTLNI  176 (351)
Q Consensus       102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~  176 (351)
                      +...++-+|-...+++..+++++.+......  ......-.....++.+   .|+.++|++++..+....-.+++.++..
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            3344555666677777777777776443211  1112222234445555   6777777777776544444666667776


Q ss_pred             HHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-HH---HHHHHH---HHH-HHcCC--
Q 018743          177 LTKSYGRA---------GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-IE---KMEEYF---KKM-KHRGM--  237 (351)
Q Consensus       177 l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~~-~~~~~--  237 (351)
                      +.+.|-..         ...++|...|.+.-+.  .|+..+--.++..+...|. .+   +..++-   ..+ .+.|.  
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~  300 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE  300 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence            66665321         1244555555544332  1332221122222222332 11   222222   111 12221  


Q ss_pred             -CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743          238 -KPNSITYCSLVSAYSKAGLIMKVDSILRQVENS  270 (351)
Q Consensus       238 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  270 (351)
                       ..+--.+..++.++.-.|+.++|.+..+.+.+.
T Consensus       301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence             123334456666666677777777777776655

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.15  E-value=0.1  Score=42.68  Aligned_cols=285  Identities=10%  Similarity=0.034  Sum_probs=176.2

Q ss_pred             cCChHHHHHHHHHhhccCCCCccHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHhhcCChH
Q 018743           42 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS--CTKFHRFDLIEKILAEMSYLGIECSAV--TYNTIIDGYGKAKKFE  117 (351)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~  117 (351)
                      .|+-..|.++-.+..+.  +..|....-.++.+  ..-.|+++.|.+-|+.|...   |...  -...|.-.-.+.|..+
T Consensus        97 AGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare  171 (531)
T COG3898          97 AGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE  171 (531)
T ss_pred             cCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence            45666666655554421  23444445555544  44578999999999999753   2221  1223333344678888


Q ss_pred             HHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CCCCHH--HHHHHHHHHH---hcCCHHHHH
Q 018743          118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQ--TLNILTKSYG---RAGMYDKMR  191 (351)
Q Consensus       118 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~  191 (351)
                      .|..+-+...+..  +.-...+...+...+..|+|+.|+++++.-.... +.++..  .-..|+.+-.   -..+...|.
T Consensus       172 aAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar  249 (531)
T COG3898         172 AARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR  249 (531)
T ss_pred             HHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence            8888888886653  4445678888999999999999999998765433 233322  1122222211   112344444


Q ss_pred             HHHHHHHHcCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh--
Q 018743          192 SVMDFMQKRFFFPTVVTY-NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE--  268 (351)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--  268 (351)
                      ..-.+..+  +.||...- -....++.+.|+..++-.+++.+-+..  |.+..+...+  ..+.|+  .+..-+++..  
T Consensus       250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gd--ta~dRlkRa~~L  321 (531)
T COG3898         250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGD--TALDRLKRAKKL  321 (531)
T ss_pred             HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCC--cHHHHHHHHHHH
Confidence            44333333  34554322 233577889999999999999998874  4444333222  334444  3444444332  


Q ss_pred             -hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcccC
Q 018743          269 -NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA-LGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       269 -~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~  344 (351)
                       ...+. +......+.++-...|++..|..--+....  ..|....|..|.+.-.. .|+-.++..++-+.++...+|
T Consensus       322 ~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP  396 (531)
T COG3898         322 ESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP  396 (531)
T ss_pred             HhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence             22222 556666777888889999888877777665  47788888888877554 499999999999888754443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.10  E-value=0.0022  Score=39.97  Aligned_cols=26  Identities=27%  Similarity=0.413  Sum_probs=13.0

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHhh
Q 018743           31 VYTALVSAYGQSGLLDEAFSTINDMK   56 (351)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~~~   56 (351)
                      +++.+...|...|++++|++.|++..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al   32 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKAL   32 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44555555555555555555555444

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.09  E-value=0.12  Score=44.78  Aligned_cols=166  Identities=18%  Similarity=0.130  Sum_probs=111.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-----HhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHH
Q 018743          174 LNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTV-----VTYNIVIETFGK----AGHIEKMEEYFKKMKHRGMKPNSIT  243 (351)
Q Consensus       174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  243 (351)
                      +..+++...=.|+-+.+++.+....+.+ +.-..     ..|...+..++.    ....+.|.+++..+.+.  -|+...
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l  268 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL  268 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence            4456666677789999998888765532 22111     233444443333    45688899999999886  566555


Q ss_pred             HH-HHHHHHHhcCCHhHHHHHHHHhhhcC---CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          244 YC-SLVSAYSKAGLIMKVDSILRQVENSD---VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ  319 (351)
Q Consensus       244 ~~-~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  319 (351)
                      |. .-.+.+...|++++|.+.|++.....   .......+-.+..++.-.++|++|.+.|..+.+.. ..+..+|..+..
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a  347 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence            43 34455667899999999999765321   12234456677778889999999999999999863 334455554443


Q ss_pred             -HHHHcCCH-------HHHHHHHHHHHHhcc
Q 018743          320 -AYNALGMT-------EAAQNLENKMIAMKE  342 (351)
Q Consensus       320 -~~~~~g~~-------~~A~~~~~~~~~~~~  342 (351)
                       ++...|+.       ++|.+++.++.....
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence             35567887       888889888866544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.031  Score=45.70  Aligned_cols=125  Identities=9%  Similarity=-0.012  Sum_probs=73.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcC-----CC---------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 018743          178 TKSYGRAGMYDKMRSVMDFMQKRF-----FF---------PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT  243 (351)
Q Consensus       178 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  243 (351)
                      ...+.+.|++..|...|++....-     ..         .-..++..+..++.+.+++..|+..-...+..+ ++|...
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA  293 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA  293 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence            345667777777777776644320     00         112345556666666777777777666666654 556666


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM-GELFLTMKE  304 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~  304 (351)
                      .-.=..++...|+++.|+..|+.+.+..+. |..+-+.++.+-.+..+..+. .++|..|..
T Consensus       294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  294 LYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            666666666677777777777777666554 555555555554444443332 556666553

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.04  E-value=0.15  Score=42.59  Aligned_cols=50  Identities=10%  Similarity=-0.015  Sum_probs=38.9

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743          286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM  337 (351)
Q Consensus       286 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  337 (351)
                      +...|++.++.-.-.-+.+  +.|++.+|..+.-++....++++|..++.++
T Consensus       472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            4556777777554444443  6889999999999999999999999998765

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.02  E-value=0.07  Score=46.51  Aligned_cols=214  Identities=14%  Similarity=0.093  Sum_probs=114.7

Q ss_pred             HHHHHhccCCh--HHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhHHHH-----H
Q 018743           35 LVSAYGQSGLL--DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-SAVTYNT-----I  106 (351)
Q Consensus        35 l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~-----l  106 (351)
                      .=.+|.+..+.  -+.+.-++++.+ +|..|+...   +...++-.|++.+|-++|.+-   |... -...|+-     +
T Consensus       604 ARkAY~rVRdl~~L~li~EL~~~k~-rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~  676 (1081)
T KOG1538|consen  604 ARKAYIRVRDLRYLELISELEERKK-RGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDY  676 (1081)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh-cCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHH
Confidence            33445444432  234444556665 566677543   344566778888888887653   2210 0111111     1


Q ss_pred             HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH------HHhcCC---CCCHHHHHHH
Q 018743          107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE------FNLMGV---KADIQTLNIL  177 (351)
Q Consensus       107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l  177 (351)
                      ..-+...|..++-..+.++-.+   ...+..--.+....+...|+.++|..+.-+      +.+.+.   ..+..+...+
T Consensus       677 aQE~~~~g~~~eKKmL~RKRA~---WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~  753 (1081)
T KOG1538|consen  677 AQEFLGSGDPKEKKMLIRKRAD---WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLC  753 (1081)
T ss_pred             HHHHhhcCChHHHHHHHHHHHH---HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHH
Confidence            2223334444333333332111   111111122344556677887777765422      222111   2334555666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH-----------HHHH
Q 018743          178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI-----------TYCS  246 (351)
Q Consensus       178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~  246 (351)
                      ...+.+...+..|.++|..|-+.         ..++......++|++|..+-+...+.  .|+..           -|..
T Consensus       754 a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeE  822 (1081)
T KOG1538|consen  754 ATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEE  822 (1081)
T ss_pred             HHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHH
Confidence            66667777888888888887542         35677888899999999988876553  33321           1233


Q ss_pred             HHHHHHhcCCHhHHHHHHHHhhh
Q 018743          247 LVSAYSKAGLIMKVDSILRQVEN  269 (351)
Q Consensus       247 l~~~~~~~g~~~~a~~~~~~~~~  269 (351)
                      .-++|.+.|+-.+|..+++++..
T Consensus       823 AqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  823 AQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             HHHHHHHhcchHHHHHHHHHhhh
Confidence            34456666777777777766554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.1  Score=40.26  Aligned_cols=131  Identities=11%  Similarity=-0.009  Sum_probs=70.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH-----HH
Q 018743          140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV-----IE  214 (351)
Q Consensus       140 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~  214 (351)
                      +.++..+.-.|.+.-....+++.++...+.++.....|++.-.+.|+.+.|...|+...+..-..+..+.+.+     ..
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            3444455555666666666666666554455556666666666666666666666655543322232222222     22


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 018743          215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD  271 (351)
Q Consensus       215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  271 (351)
                      .+.-.+++..|...+.++...+ +-|+...|.-.-+..-.|+...|.+.++.+.+..
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            3344556666666666655543 3344444433333444566666666666666553

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.00  E-value=0.15  Score=44.27  Aligned_cols=153  Identities=12%  Similarity=0.031  Sum_probs=70.5

Q ss_pred             hcCChHHHHHHHHHHHhcCCCCCCHh-----HHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHH
Q 018743          112 KAKKFEEMESSFSAMVESGGCHPDIF-----TLNSMISAYGN----SGNIEKMEKWYNEFNLMGVKADIQTLNI-LTKSY  181 (351)
Q Consensus       112 ~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~  181 (351)
                      -.|+-+.+++.+.+..+..++.-...     .|...+..++.    ..+.+.|.+++..+.+.  -|+...|.. -.+.+
T Consensus       200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~  277 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLE  277 (468)
T ss_pred             cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence            34666666666666554433322211     12222222222    33455566666666543  244333322 23444


Q ss_pred             HhcCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCH
Q 018743          182 GRAGMYDKMRSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA-YSKAGLI  257 (351)
Q Consensus       182 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~  257 (351)
                      ...|+.++|.+.|+......   .......+--+.-.+....++++|.+.|..+.+.+ ..+..+|..+..+ +...|+.
T Consensus       278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccc
Confidence            55566666666666543210   11112233334445555666666666666666543 3333344333332 2234444


Q ss_pred             -------hHHHHHHHHh
Q 018743          258 -------MKVDSILRQV  267 (351)
Q Consensus       258 -------~~a~~~~~~~  267 (351)
                             ++|..+|.++
T Consensus       357 ~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  357 EEAKEHKKEAEELFRKV  373 (468)
T ss_pred             hhhhhhHHHHHHHHHHH
Confidence                   5555555554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.92  E-value=0.034  Score=46.56  Aligned_cols=64  Identities=14%  Similarity=0.063  Sum_probs=43.0

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743          205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS----ITYCSLVSAYSKAGLIMKVDSILRQVENS  270 (351)
Q Consensus       205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  270 (351)
                      +...++.+..+|...|++++|+..|++.++.  .|+.    .+|..+..+|...|+.++|...+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4566667777777777777777777776665  3332    24667777777777777777777776654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.92  E-value=0.027  Score=38.17  Aligned_cols=93  Identities=13%  Similarity=0.039  Sum_probs=65.0

Q ss_pred             HHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhH---HHHHHHHHhh
Q 018743           36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT---YNTIIDGYGK  112 (351)
Q Consensus        36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~  112 (351)
                      .-++...|+++.|++.|.+....-  +.....||.-.+++.-+|+.++|++-+++..+..-+.+...   |..-...|..
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            446678888888888888877632  44566788888888888888888888888776542333322   3333445667


Q ss_pred             cCChHHHHHHHHHHHhcC
Q 018743          113 AKKFEEMESSFSAMVESG  130 (351)
Q Consensus       113 ~~~~~~a~~~~~~~~~~~  130 (351)
                      .|+.+.|..-|+...+.+
T Consensus       128 ~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  128 LGNDDAARADFEAAAQLG  145 (175)
T ss_pred             hCchHHHHHhHHHHHHhC
Confidence            788888888888776553

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.3  Score=43.54  Aligned_cols=83  Identities=10%  Similarity=0.119  Sum_probs=42.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc
Q 018743          210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA  289 (351)
Q Consensus       210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  289 (351)
                      +-.+.-+...|+-.+|.++-.+.+    -||...|-.=+.+++..+++++-+++-+...      .+.-|..+..+|.+.
T Consensus       688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~  757 (829)
T KOG2280|consen  688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQ  757 (829)
T ss_pred             HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhc
Confidence            333444455555555555544432    3455555555555555565555444443322      122344455556666


Q ss_pred             CCHHHHHHHHHHH
Q 018743          290 GDVEKMGELFLTM  302 (351)
Q Consensus       290 g~~~~a~~~~~~~  302 (351)
                      |+.++|.+++.+.
T Consensus       758 ~n~~EA~KYiprv  770 (829)
T KOG2280|consen  758 GNKDEAKKYIPRV  770 (829)
T ss_pred             ccHHHHhhhhhcc
Confidence            6666666555544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.83  E-value=0.023  Score=43.94  Aligned_cols=100  Identities=13%  Similarity=0.038  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHhhccCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHhHHHH
Q 018743           29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC-KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI--ECSAVTYNT  105 (351)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~  105 (351)
                      ...|+.-+.. .+.|++..|...|....+...- .-....+--|..++...|+++.|..+|..+.+.-.  +.-+..+.-
T Consensus       142 ~~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         142 TKLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             hHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            4477766664 4677899999999988864211 11133455688999999999999999999877521  223567888


Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhc
Q 018743          106 IIDGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus       106 l~~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                      |..+..+.|+.++|..+|+++.++
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHH
Confidence            888999999999999999999887

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.77  E-value=0.23  Score=40.57  Aligned_cols=106  Identities=12%  Similarity=0.137  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHH
Q 018743          208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG  287 (351)
Q Consensus       208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  287 (351)
                      +.+..+.-+...|+...|.++-.+..    .|+...|..-+.+++..++|++..++... .+     ++.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-kK-----sPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-KK-----SPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CC-----CCCChHHHHHHHH
Confidence            45566777788899888888766542    57889999999999999999988876543 11     3456889999999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 018743          288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL  333 (351)
Q Consensus       288 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  333 (351)
                      +.|+..+|..+..++     +     +..-+..|.+.|++.+|.+.
T Consensus       249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence            999999999888762     2     24556678888888888544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.76  E-value=0.21  Score=42.77  Aligned_cols=73  Identities=19%  Similarity=0.273  Sum_probs=31.9

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 018743          217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG  296 (351)
Q Consensus       217 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  296 (351)
                      .+.|+++.|.++.++      .++...|..|.......|+++-|+..|++..+         |..|+-.|.-.|+.+.-.
T Consensus       329 l~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~  393 (443)
T PF04053_consen  329 LQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS  393 (443)
T ss_dssp             HHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred             HhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence            344555555444322      22344555555555555555555555544332         223333444445544444


Q ss_pred             HHHHHHHh
Q 018743          297 ELFLTMKE  304 (351)
Q Consensus       297 ~~~~~~~~  304 (351)
                      ++.+....
T Consensus       394 kl~~~a~~  401 (443)
T PF04053_consen  394 KLAKIAEE  401 (443)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.75  E-value=0.092  Score=41.99  Aligned_cols=154  Identities=8%  Similarity=0.021  Sum_probs=105.6

Q ss_pred             hcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH----HHHHHHHHhcCCH
Q 018743          147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY----NIVIETFGKAGHI  222 (351)
Q Consensus       147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~  222 (351)
                      -..|++.+|-..++++.+. .|.|...+...=.++.-.|+.+.-...++++... ..||...|    ..+.-++...|-+
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence            3467777777788888764 4667777777778888889988888888887654 22333333    2334455678899


Q ss_pred             HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC---CccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743          223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD---VILDTPFFNCIISAYGQAGDVEKMGELF  299 (351)
Q Consensus       223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~  299 (351)
                      ++|.+.-++..+.+ +.|.-.-..+...+.-.|++.++.++..+-...-   .-.-...|-...-.+...+.++.|+++|
T Consensus       192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            99999888888765 5566677777788888899999888877644321   1111122334444566778899999999


Q ss_pred             HHHH
Q 018743          300 LTMK  303 (351)
Q Consensus       300 ~~~~  303 (351)
                      ++=+
T Consensus       271 D~ei  274 (491)
T KOG2610|consen  271 DREI  274 (491)
T ss_pred             HHHH
Confidence            8754

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.75  E-value=0.1  Score=36.36  Aligned_cols=84  Identities=12%  Similarity=0.017  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743           29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII  107 (351)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  107 (351)
                      ...+-.-.....+.|++++|.+.|+.+.......| ...+--.++.++.+.+++++|...+++.++......-.-|...+
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            33333445555677788888888887776543322 23345556677777888888888888777765433334454444


Q ss_pred             HHHhh
Q 018743          108 DGYGK  112 (351)
Q Consensus       108 ~~~~~  112 (351)
                      .+++.
T Consensus        90 ~gL~~   94 (142)
T PF13512_consen   90 RGLSY   94 (142)
T ss_pred             HHHHH
Confidence            44443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.75  E-value=0.092  Score=35.77  Aligned_cols=28  Identities=18%  Similarity=0.299  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743          241 SITYCSLVSAYSKAGLIMKVDSILRQVE  268 (351)
Q Consensus       241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~  268 (351)
                      +...-.+..+|.+.|+..++..++.++-
T Consensus       120 p~~L~kia~Ay~klg~~r~~~ell~~AC  147 (161)
T PF09205_consen  120 PEFLVKIANAYKKLGNTREANELLKEAC  147 (161)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            3333333333444444333333333333

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.74  E-value=0.071  Score=44.77  Aligned_cols=64  Identities=8%  Similarity=-0.125  Sum_probs=40.9

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---hHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743           64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS-A---VTYNTIIDGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus        64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                      +...++.+..++...|++++|+..|++..+..  |+ .   .+|..+..+|...|+.++|+..+++.++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35566666666777777777777777666653  23 2   24666667777777777777777766653

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.73  E-value=0.0041  Score=33.65  Aligned_cols=31  Identities=23%  Similarity=0.510  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          314 FATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      +..+..+|.+.|++++|.++++++++..|++
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            3444444555555555555555555544443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.70  E-value=0.0045  Score=31.72  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          313 TFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      +|..|...|.+.|++++|++++++.+....++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~   32 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP   32 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            36677788888888888888888866554443

>PRK11906 transcriptional regulator; Provisional

Probab=96.68  E-value=0.14  Score=43.23  Aligned_cols=110  Identities=8%  Similarity=-0.011  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743          222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT  301 (351)
Q Consensus       222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  301 (351)
                      ..+|.++.++..+.+ +-|......+..+....++++.|...|++....++. ....|......+.-.|+.++|.+.+++
T Consensus       320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345555555566654 456666666666666666677777777776666544 444555555555666777777777776


Q ss_pred             HHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743          302 MKERHCVPDN---ITFATMIQAYNALGMTEAAQNLENK  336 (351)
Q Consensus       302 ~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~  336 (351)
                      ..+.  .|..   ......+..|+..+ .+.|++++-+
T Consensus       398 alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  432 (458)
T PRK11906        398 SLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK  432 (458)
T ss_pred             Hhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence            5543  2322   12222233444333 4556555543

>PRK11906 transcriptional regulator; Provisional

Probab=96.68  E-value=0.32  Score=41.15  Aligned_cols=81  Identities=7%  Similarity=-0.145  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 018743           81 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN  160 (351)
Q Consensus        81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  160 (351)
                      ..+|.++-+...+.+ +.|+.+...+..+..-.++++.|..+|++....+  |....+|......+.-.|+.++|.+.++
T Consensus       320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344555555555554 4455555555555555555666666666655442  2233344444444444566666666665


Q ss_pred             HHHh
Q 018743          161 EFNL  164 (351)
Q Consensus       161 ~~~~  164 (351)
                      +..+
T Consensus       397 ~alr  400 (458)
T PRK11906        397 KSLQ  400 (458)
T ss_pred             HHhc
Confidence            5443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.67  E-value=0.21  Score=42.81  Aligned_cols=75  Identities=16%  Similarity=0.163  Sum_probs=33.9

Q ss_pred             HhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 018743          146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM  225 (351)
Q Consensus       146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  225 (351)
                      ..+.|+++.|.++.++      ..+...|..|.....+.|+.+-|++.|.+..+         |..++-.|...|+.+.-
T Consensus       328 Al~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L  392 (443)
T PF04053_consen  328 ALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL  392 (443)
T ss_dssp             HHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred             HHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence            3345555555444322      22444555555555555555555555544322         23344444445555444


Q ss_pred             HHHHHHHHHc
Q 018743          226 EEYFKKMKHR  235 (351)
Q Consensus       226 ~~~~~~~~~~  235 (351)
                      .++.+.....
T Consensus       393 ~kl~~~a~~~  402 (443)
T PF04053_consen  393 SKLAKIAEER  402 (443)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            4444444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.11  Score=42.67  Aligned_cols=127  Identities=12%  Similarity=0.041  Sum_probs=94.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc-----CCC---------ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHh
Q 018743          213 IETFGKAGHIEKMEEYFKKMKHR-----GMK---------PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF  278 (351)
Q Consensus       213 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  278 (351)
                      ...+.+.|++..|...|++.+..     +.+         .-..++..+..++.+.+++..|+.........+.. |...
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KA  293 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKA  293 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhH
Confidence            45677889999998888875532     111         12245677888999999999999999999988765 8888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HcCC-HHHHHHHHHHHHHhcc
Q 018743          279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN-ALGM-TEAAQNLENKMIAMKE  342 (351)
Q Consensus       279 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~-~~~A~~~~~~~~~~~~  342 (351)
                      .-.=.+++...|+++.|+..|+++.+.  .|+......=+..|. +..+ .+...++|..|...-.
T Consensus       294 LyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  294 LYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            888889999999999999999999985  666665554444443 3333 3445888888876544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.64  E-value=0.069  Score=41.46  Aligned_cols=90  Identities=12%  Similarity=0.090  Sum_probs=38.2

Q ss_pred             cCCHhHHHHHHHHhhhcCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHHcCCHHH
Q 018743          254 AGLIMKVDSILRQVENSDVI--LDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVP-DNITFATMIQAYNALGMTEA  329 (351)
Q Consensus       254 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~  329 (351)
                      .|++..|..-|....+..+.  -....+--|..++...|++++|..+|..+.+.- -.| -+..+.-|.....+.|+.++
T Consensus       154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~  233 (262)
T COG1729         154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE  233 (262)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence            34455555544444433211  011223334445555555555555555444320 001 12334444444445555555


Q ss_pred             HHHHHHHHHHhccc
Q 018743          330 AQNLENKMIAMKEN  343 (351)
Q Consensus       330 A~~~~~~~~~~~~~  343 (351)
                      |...|+++++.-|.
T Consensus       234 A~atl~qv~k~YP~  247 (262)
T COG1729         234 ACATLQQVIKRYPG  247 (262)
T ss_pred             HHHHHHHHHHHCCC
Confidence            55555555544443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.60  E-value=0.094  Score=35.65  Aligned_cols=93  Identities=13%  Similarity=0.013  Sum_probs=61.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHH---hHHHHHHHHHhcC
Q 018743          214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAG  290 (351)
Q Consensus       214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g  290 (351)
                      .+....|+.+.|++.|.+.+..- +-....|+.-.+++.-.|+.++|+.-+++..+..-.-+..   .|..-...|...|
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            35567788888888888777652 4566778888888888888888888777766542211222   2333334566677


Q ss_pred             CHHHHHHHHHHHHhcCC
Q 018743          291 DVEKMGELFLTMKERHC  307 (351)
Q Consensus       291 ~~~~a~~~~~~~~~~~~  307 (351)
                      +-+.|..=|+..-+.|.
T Consensus       130 ~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLGS  146 (175)
T ss_pred             chHHHHHhHHHHHHhCC
Confidence            77778777777777653

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.15  Score=40.91  Aligned_cols=152  Identities=12%  Similarity=0.057  Sum_probs=89.4

Q ss_pred             hcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCHH
Q 018743          112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYD  188 (351)
Q Consensus       112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~  188 (351)
                      ..|++.+|-..++++++.  .|.|..++...-.+|.-.|+...-...++++...   ++|.....-..+.-++...|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence            456777777777777766  4667777777777777777777777777776543   22222333344444556777788


Q ss_pred             HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCccHHHHHHHHHHHHhcCCHhHHHHHHH
Q 018743          189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG---MKPNSITYCSLVSAYSKAGLIMKVDSILR  265 (351)
Q Consensus       189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  265 (351)
                      +|++.-++..+.+.. |.-.-.+....+...|+..++.++..+-...-   .-.-..-|-...-.+...+.++.|+.+|+
T Consensus       193 dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            887777776665332 44444555666666777777777665532210   00011122223333445577777777776


Q ss_pred             H
Q 018743          266 Q  266 (351)
Q Consensus       266 ~  266 (351)
                      .
T Consensus       272 ~  272 (491)
T KOG2610|consen  272 R  272 (491)
T ss_pred             H
Confidence            5

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.50  E-value=0.26  Score=38.00  Aligned_cols=223  Identities=12%  Similarity=-0.035  Sum_probs=111.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 018743           79 HRFDLIEKILAEMSYLGIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK  157 (351)
Q Consensus        79 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  157 (351)
                      +....+...+.......... ....+......+...+.+..+...+...............+......+...++...+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            44555555555554443211 24555566666666777777777666664310123344455555566666666666666


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          158 WYNEFNLMGVKADIQTLNILTK-SYGRAGMYDKMRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH  234 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  234 (351)
                      .+.........+ ......... .+...|+++.+...+........  ......+......+...++.+.+...+.....
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            666665533222 111222222 55666666666666666543211  01222233333334455566666666666555


Q ss_pred             cCCCc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          235 RGMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       235 ~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      .. +. ....+..+...+...++++.+...+......... ....+..+...+...+..+.+...+.....
T Consensus       196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            42 22 2445555555555555666666666655544322 122333333333344455566555555554

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.47  E-value=0.43  Score=40.05  Aligned_cols=92  Identities=9%  Similarity=0.067  Sum_probs=71.5

Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743           15 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL   94 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   94 (351)
                      ++=+++.+ + +.|..+|-.|+.-+..+|..++..+++++|...  .+--..+|..-+++-...+++..++.+|.+....
T Consensus        30 rLRerIkd-N-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k  105 (660)
T COG5107          30 RLRERIKD-N-PTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK  105 (660)
T ss_pred             HHHHHhhc-C-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence            45555544 3 348999999999999999999999999999863  3444567888888877889999999999999877


Q ss_pred             CCCCCHhHHHHHHHHHhh
Q 018743           95 GIECSAVTYNTIIDGYGK  112 (351)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~  112 (351)
                      .+  +...|...+.--.+
T Consensus       106 ~l--~ldLW~lYl~YIRr  121 (660)
T COG5107         106 SL--NLDLWMLYLEYIRR  121 (660)
T ss_pred             hc--cHhHHHHHHHHHHh
Confidence            44  56677776664444

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.40  E-value=0.4  Score=39.01  Aligned_cols=229  Identities=14%  Similarity=0.079  Sum_probs=134.9

Q ss_pred             ccCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCChHHHHHHHH----HhhccCCCCccHHHHHHHHHHHHhc
Q 018743            5 GKCKQPEQASLLFEVMLSD--GLKPSVDVYTALVSAYGQSGLLDEAFSTIN----DMKSVSDCKPDVYTYSILIKSCTKF   78 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~   78 (351)
                      ....+.++|+..|...+.+  +...-..++..+..+.++.|.+++++..--    ...+......--..|..+.+++.+.
T Consensus        17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l   96 (518)
T KOG1941|consen   17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL   96 (518)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888888776654  111234567777888888888887664322    2221110011123455666666666


Q ss_pred             CCHHHHHHHHHHHHHc-CCCC---CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC----CHhHHHHHHHHHhcCC
Q 018743           79 HRFDLIEKILAEMSYL-GIEC---SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP----DIFTLNSMISAYGNSG  150 (351)
Q Consensus        79 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~  150 (351)
                      -++.+++.+-..-... |..|   --.....+..++.-.+.++++++.|+...+...-..    ...++..+...|.+..
T Consensus        97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~  176 (518)
T KOG1941|consen   97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK  176 (518)
T ss_pred             HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence            6677776665554332 1111   112334566777778889999999988766432222    2346888888899999


Q ss_pred             CHHHHHHHHHHHHh----cCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-CHHhHHHHHHHH
Q 018743          151 NIEKMEKWYNEFNL----MGVKADIQTL-----NILTKSYGRAGMYDKMRSVMDFMQK----RFFFP-TVVTYNIVIETF  216 (351)
Q Consensus       151 ~~~~a~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~  216 (351)
                      |+++|.-+.....+    .++..=..-|     -.+.-++...|....|.+.-++..+    .|-.+ .......+...|
T Consensus       177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy  256 (518)
T KOG1941|consen  177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY  256 (518)
T ss_pred             hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            99988777665533    2221111112     2344456677777777776665433    33221 233445566778


Q ss_pred             HhcCCHHHHHHHHHHHH
Q 018743          217 GKAGHIEKMEEYFKKMK  233 (351)
Q Consensus       217 ~~~~~~~~a~~~~~~~~  233 (351)
                      ...|+.+.|+.-|++..
T Consensus       257 R~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  257 RSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HhcccHhHHHHHHHHHH
Confidence            88899988888777643

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.37  E-value=0.2  Score=35.01  Aligned_cols=76  Identities=11%  Similarity=0.020  Sum_probs=44.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743          213 IETFGKAGHIEKMEEYFKKMKHRGM--KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ  288 (351)
Q Consensus       213 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (351)
                      .....+.|++++|.+.|+.+...-.  +-....-..++.++.+.+++++|...+++.++..+...-.-|-..+.+++.
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            3444566777777777777765410  113345556677777777777777777777766554333344444555443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.30  E-value=0.019  Score=31.02  Aligned_cols=24  Identities=17%  Similarity=0.295  Sum_probs=10.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          281 CIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       281 ~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      .+...|...|++++|+++|+++++
T Consensus         6 ~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    6 ALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444444444444444444443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.29  E-value=0.082  Score=41.68  Aligned_cols=75  Identities=19%  Similarity=0.126  Sum_probs=35.1

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHHHHHH
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE-----RHCVPDNITFATMI  318 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l~  318 (351)
                      +..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+...+.
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~  234 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE  234 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence            344444444444555555555554444443 444455555555555555555555444432     34444444444333


Q ss_pred             H
Q 018743          319 Q  319 (351)
Q Consensus       319 ~  319 (351)
                      .
T Consensus       235 ~  235 (280)
T COG3629         235 E  235 (280)
T ss_pred             H
Confidence            3

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.24  E-value=0.02  Score=28.66  Aligned_cols=32  Identities=28%  Similarity=0.287  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          312 ITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      ..|..+...+...|++++|++.+++.++..|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            35666777788888888888888888877765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.24  E-value=0.45  Score=38.71  Aligned_cols=230  Identities=12%  Similarity=0.045  Sum_probs=140.2

Q ss_pred             HhccCChHHHHHHHHHhhccCC-CCccHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHcC-CCCCHhHHHHHHHHHhh
Q 018743           39 YGQSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKIL----AEMSYLG-IECSAVTYNTIIDGYGK  112 (351)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~-~~~~~~~~~~l~~~~~~  112 (351)
                      +....+.++|+..+.+...... ...--.+|..+..+.++.|.+++++..-    +-..+.. -..--..|..+.+++-+
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~   95 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK   95 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777766654210 0111234666667777777777665432    1111111 01123456677777777


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCCH---hHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhc
Q 018743          113 AKKFEEMESSFSAMVESGGCHPDI---FTLNSMISAYGNSGNIEKMEKWYNEFNLMG-----VKADIQTLNILTKSYGRA  184 (351)
Q Consensus       113 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~  184 (351)
                      .-++.+++.+-..-....|..|..   .....+..++...+.++++++.|+...+.-     ......++..|...|.+.
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l  175 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL  175 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence            788888888877766655554421   233446677778888999999998875421     112345788899999999


Q ss_pred             CCHHHHHHHHHHHHH----cCCCCCHHhHH-----HHHHHHHhcCCHHHHHHHHHHHH----HcCCCc-cHHHHHHHHHH
Q 018743          185 GMYDKMRSVMDFMQK----RFFFPTVVTYN-----IVIETFGKAGHIEKMEEYFKKMK----HRGMKP-NSITYCSLVSA  250 (351)
Q Consensus       185 ~~~~~a~~~~~~~~~----~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~  250 (351)
                      .++++|.-......+    .++..-..-|.     .+..++...|+...|.+.-++..    ..|-.+ .......+...
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI  255 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI  255 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            999998877665433    22221111222     34456667787777777666643    334232 22345667788


Q ss_pred             HHhcCCHhHHHHHHHHhh
Q 018743          251 YSKAGLIMKVDSILRQVE  268 (351)
Q Consensus       251 ~~~~g~~~~a~~~~~~~~  268 (351)
                      |...|+.+.|+.-|+...
T Consensus       256 yR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  256 YRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHhcccHhHHHHHHHHHH
Confidence            889999999888887643

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.22  E-value=0.38  Score=36.84  Aligned_cols=55  Identities=16%  Similarity=0.194  Sum_probs=27.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 018743          279 FNCIISAYGQAGDVEKMGELFLTMKERH---CVPDNITFATMIQAYNALGMTEAAQNLE  334 (351)
Q Consensus       279 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~  334 (351)
                      |-..|-.+....++..|.+.++.-.+.+   -+-+..+...|+.+| ..|+.+++..++
T Consensus       193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence            3444445555566666666666643321   112344555666554 445555554443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.20  E-value=0.02  Score=28.71  Aligned_cols=32  Identities=19%  Similarity=0.272  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          312 ITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      .+|..+..+|...|++++|+..++++++.+|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45677777788888888888888888777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.17  E-value=0.068  Score=41.61  Aligned_cols=87  Identities=16%  Similarity=0.287  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHHHhcc-----CChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhc----------------CCHHHHHH
Q 018743           28 SVDVYTALVSAYGQS-----GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF----------------HRFDLIEK   86 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~   86 (351)
                      +-.+|...+..+...     +.++-....++.|.+ .|+.-|..+|+.|++.+-+-                .+-+-+.+
T Consensus        66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~  144 (406)
T KOG3941|consen   66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK  144 (406)
T ss_pred             cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence            455555555555432     344445555566666 66666777777766654331                12234566


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHhhcCC
Q 018743           87 ILAEMSYLGIECSAVTYNTIIDGYGKAKK  115 (351)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  115 (351)
                      ++++|...|+.||-.+-..|+.++.+.+.
T Consensus       145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            66666666666666666666666655443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.92  Score=41.24  Aligned_cols=179  Identities=11%  Similarity=0.142  Sum_probs=109.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHH
Q 018743           68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA  145 (351)
Q Consensus        68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  145 (351)
                      ...-+..+.+..-++.|..+-+.   .+..++  ..........+.+.|++++|...|-+.+..  +.|+     .++.-
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~k  406 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIKK  406 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHHH
Confidence            34445555666666666655443   222222  123333445566789999998888777654  3443     24555


Q ss_pred             HhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 018743          146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM  225 (351)
Q Consensus       146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  225 (351)
                      |...........+++.+.+.|+. +...-..|+.+|.+.++.++..+..+...+....-|   ....+..+.+.+-.++|
T Consensus       407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd---~e~al~Ilr~snyl~~a  482 (933)
T KOG2114|consen  407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFD---VETALEILRKSNYLDEA  482 (933)
T ss_pred             hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeee---HHHHHHHHHHhChHHHH
Confidence            56666777778888888888854 455567788999999998888777765542111112   34556666777777777


Q ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743          226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE  268 (351)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  268 (351)
                      ..+-.+...     +......++   -..+++++|.+.+..+.
T Consensus       483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence            666554332     233333333   34678888888887654

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.14  E-value=0.81  Score=39.85  Aligned_cols=311  Identities=10%  Similarity=0.106  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHH-hcCCHHHHHHHH
Q 018743           11 EQASLLFEVMLSDGLKPSV-DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT-KFHRFDLIEKIL   88 (351)
Q Consensus        11 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~   88 (351)
                      +.+..+++.++..  -|.. --|......=.+.|..+.+..+|++-..  +++.+...|......+. ..|+.+.....|
T Consensus        62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f  137 (577)
T KOG1258|consen   62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRDLF  137 (577)
T ss_pred             HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            4455566666644  3333 3455566666677777788888887774  55666666665554433 456677777777


Q ss_pred             HHHHHc-CCC-CCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc-----CCCHHHHHHHHHH
Q 018743           89 AEMSYL-GIE-CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN-----SGNIEKMEKWYNE  161 (351)
Q Consensus        89 ~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~  161 (351)
                      +..... |.. .....|...+..-...+++.....+++++++.. ...=...|.......-.     ....+++.++-..
T Consensus       138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~  216 (577)
T KOG1258|consen  138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD  216 (577)
T ss_pred             HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence            776553 211 234456666666667777777777777776542 00000111111111111     1122332222221


Q ss_pred             HHh--------------------cCCCCCH---HHHHHHHH-------HHHhcCCHHHHHHHHHHHHHcC-------CCC
Q 018743          162 FNL--------------------MGVKADI---QTLNILTK-------SYGRAGMYDKMRSVMDFMQKRF-------FFP  204 (351)
Q Consensus       162 ~~~--------------------~~~~~~~---~~~~~l~~-------~~~~~~~~~~a~~~~~~~~~~~-------~~~  204 (351)
                      ...                    .+ .|..   ...+.+-.       ++............++.-....       ..+
T Consensus       217 ~~~~~~~~~~~~~~e~~~~~v~~~~-~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~a  295 (577)
T KOG1258|consen  217 VAERSKITHSQEPLEELEIGVKDST-DPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQA  295 (577)
T ss_pred             HHhhhhcccccChhHHHHHHHhhcc-CccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHH
Confidence            110                    00 1110   01111111       1111122222222333322211       123


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743          205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS  284 (351)
Q Consensus       205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  284 (351)
                      +..+|...+.--...|+.+.+.-+++...-. +..-...|-..+.-....|+.+.|..++....+..++ +......+-.
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a  373 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEA  373 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHH
Confidence            4567777788888888888888888876532 1223345555555555668888888888776655443 2222222222


Q ss_pred             H-HHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHH
Q 018743          285 A-YGQAGDVEKMGELFLTMKERHCVPDNI-TFATMIQAYNALGMTEAAQ  331 (351)
Q Consensus       285 ~-~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~  331 (351)
                      . .-..|+++.|..+++.+.+. . |+.. .-..-+....+.|+.+.+.
T Consensus       374 ~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  374 RFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhh
Confidence            2 33457899999999988876 3 4433 2223344556677777776

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.08  E-value=0.53  Score=37.23  Aligned_cols=149  Identities=11%  Similarity=0.073  Sum_probs=101.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCH
Q 018743           73 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI  152 (351)
Q Consensus        73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  152 (351)
                      ......|++..|..+|+...... +-+...-..+..+|...|+.+.|..++..+.... -.........-+..+.+....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~  219 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT  219 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence            34668899999999999988775 4466777889999999999999999999885442 111112222334455555555


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHH
Q 018743          153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR--FFFPTVVTYNIVIETFGKAGHIEKME  226 (351)
Q Consensus       153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~  226 (351)
                      .+...+-.++...  +.|...-..+...+...|+.+.|.+.+-.+.++  +.. |...-..++..+.-.|.-+.+.
T Consensus       220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~  292 (304)
T COG3118         220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLV  292 (304)
T ss_pred             CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHH
Confidence            5444544444431  447777788889999999999999887776554  333 4555667777777777443333

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.06  E-value=0.72  Score=38.52  Aligned_cols=66  Identities=11%  Similarity=0.025  Sum_probs=50.0

Q ss_pred             CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743          204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP---NSITYCSLVSAYSKAGLIMKVDSILRQVEN  269 (351)
Q Consensus       204 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  269 (351)
                      ....+|..++..+.+.|+++.|...+..+...+...   .+.....-++.+...|+..+|...++...+
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345678888889999999999999999887754221   344555566777788999999998888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.90  E-value=0.89  Score=38.31  Aligned_cols=32  Identities=13%  Similarity=0.059  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          312 ITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      .+|..++....+.++...|...+.-+...+|.
T Consensus       299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~  330 (549)
T PF07079_consen  299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPR  330 (549)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence            35666666666777777777666666655554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.88  E-value=0.33  Score=33.22  Aligned_cols=140  Identities=14%  Similarity=0.141  Sum_probs=69.1

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHH
Q 018743           76 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM  155 (351)
Q Consensus        76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  155 (351)
                      .-.|..++..++..+...+.   +..-+|-++.-....-+-+-..++++.+-+.    -|...          .|+....
T Consensus        13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDis~----------C~NlKrV   75 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDISK----------CGNLKRV   75 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-GGG-----------S-THHH
T ss_pred             HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh----cCchh----------hcchHHH
Confidence            34566677777777766543   4455555555555555556666666665332    12211          2222333


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743          156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR  235 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  235 (351)
                      ...+-.+     ..+......-+..+...|.-++..+++..+.+ +-.+++...-.+..+|.+.|+..++-+++.+.-+.
T Consensus        76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            3222221     12333445556666667777777777766654 23345666666677777777777777777777766


Q ss_pred             CCC
Q 018743          236 GMK  238 (351)
Q Consensus       236 ~~~  238 (351)
                      |++
T Consensus       150 G~k  152 (161)
T PF09205_consen  150 GLK  152 (161)
T ss_dssp             T-H
T ss_pred             chH
Confidence            643

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.85  E-value=0.62  Score=36.09  Aligned_cols=61  Identities=23%  Similarity=0.218  Sum_probs=37.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743          281 CIISAYGQAGDVEKMGELFLTMKERHCVPDN---ITFATMIQAYNALGMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       281 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  342 (351)
                      .+.+.|.+.|.+..|..-+++|++. .+-..   ..+-.+..+|...|..++|...-.-+....|
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p  235 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP  235 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence            3456677777777777777777765 32222   2444555677777777777766555544333

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.84  E-value=0.4  Score=33.82  Aligned_cols=6  Identities=17%  Similarity=-0.163  Sum_probs=2.1

Q ss_pred             HhHHHH
Q 018743          257 IMKVDS  262 (351)
Q Consensus       257 ~~~a~~  262 (351)
                      ++.|.+
T Consensus       112 ~~~a~~  117 (140)
T smart00299      112 YEKAIE  117 (140)
T ss_pred             HHHHHH
Confidence            333333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.68  E-value=0.5  Score=33.78  Aligned_cols=119  Identities=15%  Similarity=0.054  Sum_probs=67.8

Q ss_pred             HhHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHH
Q 018743          207 VTYNIVIET---FGKAGHIEKMEEYFKKMKHRGMKPNSI-TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI  282 (351)
Q Consensus       207 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  282 (351)
                      .+.+.|+..   -...++.+++..++..+.-.  .|... .-..-...+...|++.+|..+|+++....  |....-..|
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL   83 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKAL   83 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence            334444443   45678899999999988875  44432 22333445678899999999999987664  333444455


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 018743          283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN  332 (351)
Q Consensus       283 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  332 (351)
                      +..|....+-..=...-+++.+.+-.|+.   ..+++.+....+...|..
T Consensus        84 lA~CL~~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen   84 LALCLYALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE  130 (160)
T ss_pred             HHHHHHHcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence            55555443333333334445555433332   334455555544444433

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.68  E-value=0.52  Score=34.02  Aligned_cols=136  Identities=10%  Similarity=0.054  Sum_probs=82.1

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-HHHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV-TYNT  105 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~  105 (351)
                      +...|..-++ +.+.++.++|+.-|..+.+ .|...-+. ............|+...|...|+++-.....|-.. -...
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR  135 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR  135 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence            4455555554 3456677888888888776 34332221 22233344667788888888888876654333322 1111


Q ss_pred             --HHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 018743          106 --IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG  166 (351)
Q Consensus       106 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  166 (351)
                        -.-.+...|.++......+.+... +.+.....-..|.-+..+.|++.+|.++|..+....
T Consensus       136 lraa~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da  197 (221)
T COG4649         136 LRAAYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA  197 (221)
T ss_pred             HHHHHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence              122355678888877777776433 344445556667777778888888888888776543

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=95.62  E-value=0.85  Score=36.08  Aligned_cols=64  Identities=13%  Similarity=0.130  Sum_probs=34.8

Q ss_pred             CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 018743           97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN  160 (351)
Q Consensus        97 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  160 (351)
                      .++..+...++..+++.++|..-.++++......+...|...|..++......||..-..++.+
T Consensus       199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~  262 (292)
T PF13929_consen  199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID  262 (292)
T ss_pred             CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence            4455555555566666666666666665554443344455556666666666665554444443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.61  E-value=0.5  Score=33.31  Aligned_cols=43  Identities=12%  Similarity=0.227  Sum_probs=19.8

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcC
Q 018743          105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS  149 (351)
Q Consensus       105 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  149 (351)
                      .++..+...+.......+++.+...+  +.+....+.++..|++.
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~   54 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH
Confidence            34444444445555555555554442  23334445555555443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.48  E-value=0.3  Score=38.64  Aligned_cols=78  Identities=13%  Similarity=0.036  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHhHHH
Q 018743          137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK-----RFFFPTVVTYNI  211 (351)
Q Consensus       137 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~  211 (351)
                      .++..++..+...|+.+.+...++++.... +.+...|..++.+|.+.|+...|+..|+.+..     .|+.|.+.+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            356666677777777777777777776654 55666777777777777777777777766543     466676666665


Q ss_pred             HHHH
Q 018743          212 VIET  215 (351)
Q Consensus       212 l~~~  215 (351)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            5555

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.44  E-value=1.1  Score=36.06  Aligned_cols=20  Identities=5%  Similarity=-0.125  Sum_probs=15.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHH
Q 018743          319 QAYNALGMTEAAQNLENKMI  338 (351)
Q Consensus       319 ~~~~~~g~~~~A~~~~~~~~  338 (351)
                      ..+.+.++++.|..+|+-.+
T Consensus       254 ~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  254 KKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHhhcCHHHHHHHHHHHH
Confidence            34667889999999988554

It is also involved in sporulation [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.41  E-value=1.1  Score=36.00  Aligned_cols=62  Identities=10%  Similarity=0.010  Sum_probs=32.0

Q ss_pred             HHHHHHHHHhhcCChH---HHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 018743          102 TYNTIIDGYGKAKKFE---EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM  165 (351)
Q Consensus       102 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  165 (351)
                      ++..++.+|...+..+   +|..+++.+....|-  .+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN--KPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            4445555565555433   344455555433222  2333444455555566666677766666654

It is also involved in sporulation [].

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.39  E-value=0.2  Score=39.12  Aligned_cols=105  Identities=14%  Similarity=0.206  Sum_probs=54.7

Q ss_pred             CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 018743          168 KADIQTLNILTKSYGR-----AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI  242 (351)
Q Consensus       168 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  242 (351)
                      ..|..+|...+..+..     .+..+-....++.|.+-|+.-|..+|+.|+..+-+..-                .|.. 
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-  126 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-  126 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence            3455566655555543     24555556666667777777777777777765533211                1111 


Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743          243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD  291 (351)
Q Consensus       243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  291 (351)
                      .+..+.-.|-  .+-+-+++++++|...|+.||..+-..|+.++.+.+-
T Consensus       127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            1111111111  1223355666666666666666666666666655443

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=95.34  E-value=0.24  Score=31.64  Aligned_cols=63  Identities=11%  Similarity=0.199  Sum_probs=40.9

Q ss_pred             CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ  319 (351)
Q Consensus       256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  319 (351)
                      |.-++.+-++.+...+..|++.+..+.+++|.+.+++..|+++|+..+.. +..+...|..+++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence            44456666666777777777777777777777777777777777766643 2223445555543

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.34  E-value=0.44  Score=43.13  Aligned_cols=143  Identities=17%  Similarity=0.179  Sum_probs=86.6

Q ss_pred             HHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhc
Q 018743           34 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA  113 (351)
Q Consensus        34 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  113 (351)
                      .....+.+.|++++|...|-+-..  -+.|+.     ++.-|....+...--.+++.+.+.|+. +...-..|+.+|.+.
T Consensus       373 kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKl  444 (933)
T KOG2114|consen  373 KYGDYLYGKGDFDEATDQYIETIG--FLEPSE-----VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKL  444 (933)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHcc--cCChHH-----HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHh
Confidence            334456678999999998877764  234432     344556666777778888888888854 666677899999999


Q ss_pred             CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018743          114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV  193 (351)
Q Consensus       114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  193 (351)
                      ++.++-.++.+... .+...-|   ....+..+.+.+-.++|..+-....     .+......++   -..+++++|.+.
T Consensus       445 kd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~-----~he~vl~ill---e~~~ny~eAl~y  512 (933)
T KOG2114|consen  445 KDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFK-----KHEWVLDILL---EDLHNYEEALRY  512 (933)
T ss_pred             cchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhc-----cCHHHHHHHH---HHhcCHHHHHHH
Confidence            99888777766653 2211112   3344555555555555554443322     1222333332   334566666665


Q ss_pred             HHH
Q 018743          194 MDF  196 (351)
Q Consensus       194 ~~~  196 (351)
                      +..
T Consensus       513 i~s  515 (933)
T KOG2114|consen  513 ISS  515 (933)
T ss_pred             Hhc
Confidence            544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.33  E-value=1.2  Score=38.01  Aligned_cols=61  Identities=8%  Similarity=0.055  Sum_probs=33.4

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 018743          104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL  164 (351)
Q Consensus       104 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  164 (351)
                      ..+..++-+.|+.++|.+.+.++.+.............|+.++...+.+.++..++.+..+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            3455555566666666666666654421111223455566666666666666666666543

The molecular function of this protein is uncertain.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=95.32  E-value=0.24  Score=31.99  Aligned_cols=60  Identities=12%  Similarity=0.251  Sum_probs=38.6

Q ss_pred             HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ  319 (351)
Q Consensus       259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  319 (351)
                      +..+-++.+...++.|++.+..+.+++|.+.+++..|+++|+..+.. +.+....|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence            56666677777777888888888888888888888888888877754 2333336666554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.28  E-value=0.032  Score=28.06  Aligned_cols=32  Identities=19%  Similarity=0.355  Sum_probs=22.3

Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 018743           17 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF   49 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   49 (351)
                      |++.++..+. ++.+|+.+...|...|++++|+
T Consensus         2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence            4455555544 7778888888888888877775

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.22  E-value=0.48  Score=35.11  Aligned_cols=89  Identities=15%  Similarity=0.064  Sum_probs=54.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCccH-----HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc
Q 018743          215 TFGKAGHIEKMEEYFKKMKHRGMKPNS-----ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA  289 (351)
Q Consensus       215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  289 (351)
                      -+..+|++++|..-|...+..- ++..     ..|..-..++.+.+.++.|+.-....++.++. .......-..+|.+.
T Consensus       104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~  181 (271)
T KOG4234|consen  104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM  181 (271)
T ss_pred             HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence            4566777888887777777652 3322     22333444566777777777777766666543 233333334566777


Q ss_pred             CCHHHHHHHHHHHHhc
Q 018743          290 GDVEKMGELFLTMKER  305 (351)
Q Consensus       290 g~~~~a~~~~~~~~~~  305 (351)
                      ..+++|++=|+.+.+.
T Consensus       182 ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  182 EKYEEALEDYKKILES  197 (271)
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            7777777777777764

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.08  E-value=0.96  Score=33.42  Aligned_cols=97  Identities=16%  Similarity=0.166  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhHHHH-
Q 018743           30 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD--VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-SAVTYNT-  105 (351)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~-  105 (351)
                      ..+..+...|++.|+.+.|++.|.++.. ....+.  ...+-.+++.....+++..+...+.+....-..+ +...-+. 
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            4566777788888888888888888776 333332  3346667777777778877777776664431111 1111111 


Q ss_pred             -HH--HHHhhcCChHHHHHHHHHHH
Q 018743          106 -II--DGYGKAKKFEEMESSFSAMV  127 (351)
Q Consensus       106 -l~--~~~~~~~~~~~a~~~~~~~~  127 (351)
                       ..  -.+...+++..|-+.|-...
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccC
Confidence             11  12234567777777766653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.07  E-value=1.2  Score=34.53  Aligned_cols=80  Identities=9%  Similarity=0.037  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 018743           66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGI--ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI  143 (351)
Q Consensus        66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  143 (351)
                      ..|+.-+ .-.+.|++++|.+.|+.+....+  +-...+...++-++.+.++++.|+..+++.....+..||.. |...|
T Consensus        36 ~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Yl  113 (254)
T COG4105          36 ELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYL  113 (254)
T ss_pred             HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHH
Confidence            3444433 34467888888888888876531  22344555666777888888888888888888766666653 44444


Q ss_pred             HHHh
Q 018743          144 SAYG  147 (351)
Q Consensus       144 ~~~~  147 (351)
                      .+++
T Consensus       114 kgLs  117 (254)
T COG4105         114 KGLS  117 (254)
T ss_pred             HHHH
Confidence            4443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.06  E-value=1.2  Score=34.27  Aligned_cols=228  Identities=14%  Similarity=0.042  Sum_probs=156.8

Q ss_pred             cCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHhhcCChHHHH
Q 018743           42 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL-GIECSAVTYNTIIDGYGKAKKFEEME  120 (351)
Q Consensus        42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~  120 (351)
                      .+....+...+...............+......+...+++..+...+...... ........+......+...+.+..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            45666777777766652211112566777777888889999888888887652 23556667777778888888899999


Q ss_pred             HHHHHHHhcCCCCCCHhHHHHHHH-HHhcCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743          121 SSFSAMVESGGCHPDIFTLNSMIS-AYGNSGNIEKMEKWYNEFNLMGV--KADIQTLNILTKSYGRAGMYDKMRSVMDFM  197 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  197 (351)
                      +.+.......  +.+......... .+...|+++.+...+........  ......+......+...++.+.+...+...
T Consensus       116 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  193 (291)
T COG0457         116 ELLEKALALD--PDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA  193 (291)
T ss_pred             HHHHHHHcCC--CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence            9999887643  112222333333 78899999999999999865221  123344444455567788999999999988


Q ss_pred             HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743          198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV  272 (351)
Q Consensus       198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  272 (351)
                      ...........+..+...+...+.++.+...+....... +.....+..+...+...+..+.+...+........
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            776332135667778888888889999999999988763 22244444455555567778999988888876643

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.00  E-value=0.099  Score=26.07  Aligned_cols=30  Identities=20%  Similarity=0.311  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743          313 TFATMIQAYNALGMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  342 (351)
                      +|..+...|...|++++|.+.|++.++.+|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            566777778888888888888888887776

...

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.00  E-value=0.73  Score=34.04  Aligned_cols=59  Identities=12%  Similarity=0.035  Sum_probs=25.6

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccC--HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILD--TPFFNCIISAYGQAGDVEKMGELFLTM  302 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~  302 (351)
                      +..+...|.+.|+.+.|.+.+.++.+....+.  ...+-.+++.....+++..+.....++
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34444444444555555544444444322221  122334444444444554444444443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.99  E-value=0.034  Score=27.97  Aligned_cols=20  Identities=20%  Similarity=0.252  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHH
Q 018743          311 NITFATMIQAYNALGMTEAA  330 (351)
Q Consensus       311 ~~~~~~l~~~~~~~g~~~~A  330 (351)
                      ...|..+...|...|++++|
T Consensus        13 ~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   13 AEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHHHHHHHHHCcCHHhh
Confidence            34444444444444444444

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.97  E-value=2.6  Score=37.78  Aligned_cols=276  Identities=11%  Similarity=0.041  Sum_probs=152.6

Q ss_pred             hHHHHHHHHHhhccCCCCccHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHH-------cCCCCCHhHHHHHHHHHhh
Q 018743           45 LDEAFSTINDMKSVSDCKPDVYTYSILIK----S-CTKFHRFDLIEKILAEMSY-------LGIECSAVTYNTIIDGYGK  112 (351)
Q Consensus        45 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~  112 (351)
                      ...|.++++...+. |   +...-..+..    + ....+|.+.|..+|+.+.+       .|   .......+..+|.+
T Consensus       228 ~~~a~~~~~~~a~~-g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~  300 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL-G---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ  300 (552)
T ss_pred             hhHHHHHHHHHHhh-c---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence            45788888877762 2   2222222222    2 4456788999999988876       44   33355566777766


Q ss_pred             cC-----ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----
Q 018743          113 AK-----KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN-SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG----  182 (351)
Q Consensus       113 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----  182 (351)
                      ..     +.+.|+.++.+..+.+  .|+.......+..... ..+...|.++|......|.. .  .+-.+..+|.    
T Consensus       301 g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~g  375 (552)
T KOG1550|consen  301 GLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLG  375 (552)
T ss_pred             CCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCC
Confidence            43     6677999999887764  4555444333333333 35678999999998887732 2  2222333222    


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH-HH---Hh----c
Q 018743          183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS-AY---SK----A  254 (351)
Q Consensus       183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~----~  254 (351)
                      -..+...|...+.+.-+.+........ ..+..+.. ++++.+.-.+..+.+.|.. ...+-...+. ..   ..    .
T Consensus       376 v~r~~~~A~~~~k~aA~~g~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~  452 (552)
T KOG1550|consen  376 VERNLELAFAYYKKAAEKGNPSAAYLL-GAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVI  452 (552)
T ss_pred             cCCCHHHHHHHHHHHHHccChhhHHHH-HHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccc
Confidence            224678888888888887632222222 22333333 7777777777777666533 2222221111 11   11    1


Q ss_pred             CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCC
Q 018743          255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA----GDVEKMGELFLTMKERHCVPDNITFATMIQAYNA----LGM  326 (351)
Q Consensus       255 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~  326 (351)
                      .+...+...+.+....|   +......+...|..-    .+++.|...|......+    ......+...+..    .. 
T Consensus       453 ~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-  524 (552)
T KOG1550|consen  453 STLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-  524 (552)
T ss_pred             cchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-
Confidence            24445555665555443   444455555544433    34777777777777664    2222223222221    22 


Q ss_pred             HHHHHHHHHHHHHhccc
Q 018743          327 TEAAQNLENKMIAMKEN  343 (351)
Q Consensus       327 ~~~A~~~~~~~~~~~~~  343 (351)
                      +..|.+++++..+.+..
T Consensus       525 ~~~a~~~~~~~~~~~~~  541 (552)
T KOG1550|consen  525 LHLAKRYYDQASEEDSR  541 (552)
T ss_pred             hHHHHHHHHHHHhcCch
Confidence            67888888877765543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.93  E-value=3.6  Score=39.28  Aligned_cols=110  Identities=10%  Similarity=0.051  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH--HHHHHHHH
Q 018743          173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI--TYCSLVSA  250 (351)
Q Consensus       173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~  250 (351)
                      .|.+....+...+.+++|.-.|+..-+.         ...+.+|..+|+|.+|+.+..++...   -+..  +-..|+..
T Consensus       941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen  941 IYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSR 1008 (1265)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHH
Confidence            3444555556667777777777654332         24567777788888888877765431   1221  22567777


Q ss_pred             HHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743          251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM  302 (351)
Q Consensus       251 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  302 (351)
                      +...+++-+|-++..+....        ....+..+++...|++|.++....
T Consensus      1009 L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence            77788888887777765532        122334455666666666655443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.76  E-value=1.1  Score=32.48  Aligned_cols=14  Identities=43%  Similarity=0.368  Sum_probs=5.4

Q ss_pred             hcCCHhHHHHHHHH
Q 018743          253 KAGLIMKVDSILRQ  266 (351)
Q Consensus       253 ~~g~~~~a~~~~~~  266 (351)
                      +.|++..|.+.|..
T Consensus       179 kagd~a~A~~~F~q  192 (221)
T COG4649         179 KAGDFAKAKSWFVQ  192 (221)
T ss_pred             hccchHHHHHHHHH
Confidence            33333333333333

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.76  E-value=0.095  Score=26.73  Aligned_cols=26  Identities=31%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          278 FFNCIISAYGQAGDVEKMGELFLTMK  303 (351)
Q Consensus       278 ~~~~l~~~~~~~g~~~~a~~~~~~~~  303 (351)
                      ++..|...|.+.|++++|+++|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36778888889999999999888854

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.74  E-value=4.1  Score=38.98  Aligned_cols=86  Identities=9%  Similarity=0.086  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ  288 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (351)
                      |.+....+.....+++|.-.|+..=+         ....+.+|..+|+|.+|..+..++....-. -..+-..|..-+..
T Consensus       942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen  942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVE 1011 (1265)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHH
Confidence            33444445556777777766665322         233466777888888888888776532211 11122567777888


Q ss_pred             cCCHHHHHHHHHHHHh
Q 018743          289 AGDVEKMGELFLTMKE  304 (351)
Q Consensus       289 ~g~~~~a~~~~~~~~~  304 (351)
                      .++.-+|-++..+...
T Consensus      1012 ~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLS 1027 (1265)
T ss_pred             cccchhHHHHHHHHhc
Confidence            8888888888877664

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.70  E-value=1.1  Score=35.88  Aligned_cols=106  Identities=16%  Similarity=0.134  Sum_probs=71.0

Q ss_pred             cCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCC--CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCH
Q 018743           94 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG--CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI  171 (351)
Q Consensus        94 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  171 (351)
                      .|.+....+...++..-....+++.+...+-++..+..  ..|+. +-...++.+. .-++++++.++..=+..|+-||.
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dq  135 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ  135 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence            34455566666666666667788888888877754321  11111 1122233222 34677888888888888889999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743          172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRF  201 (351)
Q Consensus       172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  201 (351)
                      ++++.+++.+.+.+++.+|..+...|....
T Consensus       136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            999999999999999988888877765543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.67  E-value=1.3  Score=32.83  Aligned_cols=96  Identities=16%  Similarity=0.017  Sum_probs=60.4

Q ss_pred             HHHHHHHhcCCHhHHHHHHHHhhhcCCccC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743          246 SLVSAYSKAGLIMKVDSILRQVENSDVILD--TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA  323 (351)
Q Consensus       246 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  323 (351)
                      .+...+...|++++|...++........-+  ..+--.|.+.....|.+++|+.+++...+.+.  .......-...+..
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~  171 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA  171 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence            345567777888888887776654321111  11222445667777888888888877665433  23334445567788


Q ss_pred             cCCHHHHHHHHHHHHHhccc
Q 018743          324 LGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       324 ~g~~~~A~~~~~~~~~~~~~  343 (351)
                      .|+.++|+.-|++.+.....
T Consensus       172 kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         172 KGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             cCchHHHHHHHHHHHHccCC
Confidence            88888888888888777543

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.36  E-value=1.6  Score=34.98  Aligned_cols=98  Identities=13%  Similarity=0.125  Sum_probs=48.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 018743          170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS  246 (351)
Q Consensus       170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  246 (351)
                      +..+...++..-....+++.+...+-++..+.   ..|+...+ ..++.+ -.-++++++.++..=++.|+-||..+++.
T Consensus        63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~  140 (418)
T KOG4570|consen   63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCL  140 (418)
T ss_pred             ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhhHHH
Confidence            33344444444444555556655555554321   11111111 122222 22345566666665556666666666666


Q ss_pred             HHHHHHhcCCHhHHHHHHHHhhh
Q 018743          247 LVSAYSKAGLIMKVDSILRQVEN  269 (351)
Q Consensus       247 l~~~~~~~g~~~~a~~~~~~~~~  269 (351)
                      ++..+.+.+++..|..+...+..
T Consensus       141 l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  141 LMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHH
Confidence            66666666666666665555543

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.31  E-value=1.2  Score=37.96  Aligned_cols=127  Identities=12%  Similarity=0.135  Sum_probs=78.7

Q ss_pred             HhcCCHHHHHH-HHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHH
Q 018743          217 GKAGHIEKMEE-YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM  295 (351)
Q Consensus       217 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  295 (351)
                      ...|+.-.|-+ ++..+....-.|+.....+.|  +...|+++.+...+....+.- .....+...+++.....|++++|
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~-~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKII-GTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhh-cCCchHHHHHHHhhhchhhHHHH
Confidence            34556555544 344444433344444333333  456788888888777655432 22455677778888888888888


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCC
Q 018743          296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK  347 (351)
Q Consensus       296 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  347 (351)
                      ..+-..|....+. ++.............|-+|++.-.|++....++..+..
T Consensus       377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g  427 (831)
T PRK15180        377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG  427 (831)
T ss_pred             HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence            8888888766554 44444444444556777888888888887777665443

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.27  E-value=2.4  Score=34.35  Aligned_cols=130  Identities=11%  Similarity=0.189  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CCCHHhHHHHHHHHHhcCC--
Q 018743          153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGR--AG----MYDKMRSVMDFMQKRFF---FPTVVTYNIVIETFGKAGH--  221 (351)
Q Consensus       153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~--  221 (351)
                      ++...+++.|.+.|+..+..+|.+.......  ..    ....+..+++.|.+..+   .++...+..++..  ..++  
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e  156 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE  156 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence            4456677788888877776665543333222  22    24577788888887642   2333444444432  2333  


Q ss_pred             --HHHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCC--HhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743          222 --IEKMEEYFKKMKHRGMKPNS--ITYCSLVSAYSKAGL--IMKVDSILRQVENSDVILDTPFFNCIIS  284 (351)
Q Consensus       222 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~  284 (351)
                        .+.+..+|+.+.+.|+..+.  .....++..+.....  ..++..+++.+.+.++++....|..+.-
T Consensus       157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl  225 (297)
T PF13170_consen  157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL  225 (297)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence              35567777888877766543  333333333322222  3467778888888888877777665544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.25  E-value=0.13  Score=25.31  Aligned_cols=28  Identities=18%  Similarity=0.280  Sum_probs=17.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          316 TMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       316 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      .+..++.+.|++++|.+.|+++++..|+
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3455566666666666666666665553

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=94.18  E-value=3.6  Score=36.08  Aligned_cols=309  Identities=11%  Similarity=0.047  Sum_probs=188.5

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI  106 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  106 (351)
                      +...|..++.---...+.+.+...+..+...   -|... -|......=.+.|..+.+.++|++-.. +++.+...|...
T Consensus        44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y  119 (577)
T KOG1258|consen   44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY  119 (577)
T ss_pred             cccchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence            5667777777655556667788888888853   45544 466666667788999999999999875 467788888877


Q ss_pred             HHHHh-hcCChHHHHHHHHHHHhcCCCC-CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-
Q 018743          107 IDGYG-KAKKFEEMESSFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR-  183 (351)
Q Consensus       107 ~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  183 (351)
                      +..+. ..|+.+.....|+......|.. .+...|...+..-...+++.....++++.++....-=...|......... 
T Consensus       120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~  199 (577)
T KOG1258|consen  120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQN  199 (577)
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcC
Confidence            66554 4678888888999887765543 23446888888888899999999999998864221111222222222211 


Q ss_pred             ----cCCHHHHHHHHHHHHHc----CCCCCHHhHHH------------------HH-------HHHHhcCCHHHHHHHHH
Q 018743          184 ----AGMYDKMRSVMDFMQKR----FFFPTVVTYNI------------------VI-------ETFGKAGHIEKMEEYFK  230 (351)
Q Consensus       184 ----~~~~~~a~~~~~~~~~~----~~~~~~~~~~~------------------l~-------~~~~~~~~~~~a~~~~~  230 (351)
                          ....+++.++-......    ...+....+..                  +-       ..+.......+....++
T Consensus       200 ~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE  279 (577)
T KOG1258|consen  200 EEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFE  279 (577)
T ss_pred             ChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhh
Confidence                12233333332222110    00001111111                  11       11111112222222233


Q ss_pred             HHHHc---CC----CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          231 KMKHR---GM----KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK  303 (351)
Q Consensus       231 ~~~~~---~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  303 (351)
                      .-.+.   .+    +++..+|...+.--...|+.+.+.-++++..-.- ..-...|-..+.-....|+.+-|..++.+..
T Consensus       280 ~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~  358 (577)
T KOG1258|consen  280 EGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARAC  358 (577)
T ss_pred             hhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence            22221   11    2355678888888889999999999999876432 2234456666666677799999998888877


Q ss_pred             hcCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhcc
Q 018743          304 ERHCVPDNITFATMIQA-YNALGMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       304 ~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~  342 (351)
                      +--++ +......+-.. ....|+++.|..+++.+.+.-|
T Consensus       359 ~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p  397 (577)
T KOG1258|consen  359 KIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEYP  397 (577)
T ss_pred             hhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC
Confidence            65333 33333333233 4456899999999999987653

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.99  E-value=1.7  Score=31.56  Aligned_cols=36  Identities=8%  Similarity=0.191  Sum_probs=21.2

Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 018743           15 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS   50 (351)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   50 (351)
                      +.+..+.+.+++|+...+..+++.+.+.|++.....
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q   50 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ   50 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            344445555666666666666666666666554433

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=93.94  E-value=0.46  Score=30.44  Aligned_cols=60  Identities=18%  Similarity=0.309  Sum_probs=33.6

Q ss_pred             HHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743           47 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID  108 (351)
Q Consensus        47 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (351)
                      ++.+-++.+.. ....|++....+.+++|.+.+|+..|.++|+-.+... ..+...|..++.
T Consensus        25 e~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq   84 (103)
T cd00923          25 ELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence            33444444444 4456666667777777777777777777776655321 113345555444

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=93.93  E-value=2.1  Score=32.41  Aligned_cols=188  Identities=11%  Similarity=0.022  Sum_probs=98.1

Q ss_pred             HhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChH
Q 018743           39 YGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE  117 (351)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  117 (351)
                      |-..|-+.-|.-=|.+....   .|+ +.+||.+.--+...|+++.|.+.|+...+.+.. ...+...-.-++.-.|++.
T Consensus        75 YDSlGL~~LAR~DftQaLai---~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~  150 (297)
T COG4785          75 YDSLGLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYK  150 (297)
T ss_pred             hhhhhHHHHHhhhhhhhhhc---CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchH
Confidence            33445455555445555443   333 455777777778888888888888888776522 2223222223344568888


Q ss_pred             HHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHH
Q 018743          118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI-LTKSYGRAGMYDKMRSVMDF  196 (351)
Q Consensus       118 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~  196 (351)
                      -|.+-+.+.-+.....|-...|--+..   +.-++.+|..-+.+--.   ..|..-|.. ++..|...=..+.+.+-...
T Consensus       151 LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a  224 (297)
T COG4785         151 LAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEETLMERLKA  224 (297)
T ss_pred             hhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHHHHHHHHh
Confidence            888877777666433332333333332   33455566544433221   122222222 22333222222222221111


Q ss_pred             HHHcC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743          197 MQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG  236 (351)
Q Consensus       197 ~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  236 (351)
                      -...+   -..-+.||--+...+...|+.++|..+|+-.+..+
T Consensus       225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            11100   00124678888888888888888888888877664

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.73  E-value=1.8  Score=31.02  Aligned_cols=51  Identities=10%  Similarity=-0.140  Sum_probs=22.2

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 018743           77 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE  128 (351)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  128 (351)
                      +.++.+.+..+++.+.... |-....-..-...+...|+|.+|..+|+.+.+
T Consensus        22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            4445555555555554432 11111111122234455555555555555543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.60  E-value=2.7  Score=32.51  Aligned_cols=55  Identities=18%  Similarity=0.332  Sum_probs=26.9

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhc---CCccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENS---DVILDTPFFNCIISAYGQAGDVEKMGELF  299 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  299 (351)
                      |...|-.+....++..|.+.++.--+.   .-.-+..+...|+.+|- .|+.+++.+++
T Consensus       193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl  250 (308)
T KOG1585|consen  193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence            333444444555666666666653221   11124445555665553 45555555443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.56  E-value=0.26  Score=25.83  Aligned_cols=30  Identities=23%  Similarity=0.378  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743          312 ITFATMIQAYNALGMTEAAQNLENKMIAMK  341 (351)
Q Consensus       312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  341 (351)
                      .+++.+...|...|++++|..++++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            567788888888888888888888886653

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.46  E-value=1.9  Score=30.41  Aligned_cols=54  Identities=13%  Similarity=0.004  Sum_probs=35.6

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743          217 GKAGHIEKMEEYFKKMKHRGMKPNS-ITYCSLVSAYSKAGLIMKVDSILRQVENSDV  272 (351)
Q Consensus       217 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  272 (351)
                      ...++++++..++..|.-.  .|+. ..-..-...+...|++.+|..+|+++.+.+.
T Consensus        21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~   75 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG   75 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence            3477888888888887764  3432 2222223345678888888888888887653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.43  E-value=3.3  Score=35.39  Aligned_cols=90  Identities=12%  Similarity=0.140  Sum_probs=51.6

Q ss_pred             HHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh
Q 018743           37 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF  116 (351)
Q Consensus        37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (351)
                      ......|+++.+...+......  +.....+...+++...+.++++.|...-.-|....++ ++.........--..|-+
T Consensus       331 ~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~  407 (831)
T PRK15180        331 VIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLF  407 (831)
T ss_pred             HHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHH
Confidence            3445567777777666655532  2334455666666667777777777777666655544 333333333333345566


Q ss_pred             HHHHHHHHHHHhc
Q 018743          117 EEMESSFSAMVES  129 (351)
Q Consensus       117 ~~a~~~~~~~~~~  129 (351)
                      +++.-.|+++...
T Consensus       408 d~~~~~wk~~~~~  420 (831)
T PRK15180        408 DKSYHYWKRVLLL  420 (831)
T ss_pred             HHHHHHHHHHhcc
Confidence            6676666666544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.31  E-value=0.3  Score=24.27  Aligned_cols=27  Identities=30%  Similarity=0.284  Sum_probs=17.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          278 FFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      +|..+..++...|++++|+..|++.++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455666666667777777777766665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=93.24  E-value=1.5  Score=28.44  Aligned_cols=86  Identities=16%  Similarity=0.138  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 018743            9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL   88 (351)
Q Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   88 (351)
                      ..++|..+-+.+...+-. ...+--.-+..+...|++++|+.+.+.+.     .||...|..|-.  .+.|-.+....-+
T Consensus        20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-----~pdlepw~ALce--~rlGl~s~l~~rl   91 (115)
T TIGR02508        20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC-----YPDLEPWLALCE--WRLGLGSALESRL   91 (115)
T ss_pred             HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC-----CchHHHHHHHHH--HhhccHHHHHHHH
Confidence            345666666655543211 11122222345666677777766665442     566666655433  2555556566666


Q ss_pred             HHHHHcCCCCCHhHH
Q 018743           89 AEMSYLGIECSAVTY  103 (351)
Q Consensus        89 ~~~~~~~~~~~~~~~  103 (351)
                      .+|..+| .|....|
T Consensus        92 ~rla~sg-~p~lq~F  105 (115)
T TIGR02508        92 NRLAASG-DPRLQTF  105 (115)
T ss_pred             HHHHhCC-CHHHHHH
Confidence            6666655 3343333

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=93.13  E-value=4  Score=33.14  Aligned_cols=131  Identities=13%  Similarity=0.190  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh--c----CChHHHHHHHHHHHhcCCCC--CCHhHHHHHHHHHhcCCCH
Q 018743           81 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGK--A----KKFEEMESSFSAMVESGGCH--PDIFTLNSMISAYGNSGNI  152 (351)
Q Consensus        81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~  152 (351)
                      ++....+++.|.+.|...+..+|.+.......  .    .....|..+|+.|.+....-  ++..++..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45566778888888877777666553332222  2    23456777888887664322  222334444332  33333


Q ss_pred             ----HHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 018743          153 ----EKMEKWYNEFNLMGVKADIQ--TLNILTKSYGRAGM--YDKMRSVMDFMQKRFFFPTVVTYNIVI  213 (351)
Q Consensus       153 ----~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~  213 (351)
                          +.+..+|+.+.+.|+..+..  ....++........  ...+.++++.+.+.++++....|..+.
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence                44566666666666554322  22333332222222  235666667777777666666665543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.06  E-value=6.8  Score=35.60  Aligned_cols=317  Identities=10%  Similarity=0.086  Sum_probs=166.6

Q ss_pred             ccCCCHHHHHHHHHHH--------HhCCCCCCHHHHHH-----HHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHH
Q 018743            5 GKCKQPEQASLLFEVM--------LSDGLKPSVDVYTA-----LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL   71 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   71 (351)
                      .+..++++-..+.+.+        ..-|++.+..-|..     ++.-+...+.+..|+++-..+....  ..+...|...
T Consensus       400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~W  477 (829)
T KOG2280|consen  400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEW  477 (829)
T ss_pred             cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHH
Confidence            3445555555444432        23366666555544     4666777788889988888776411  1114556666


Q ss_pred             HHHHHhcCC--HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC---CCHhHHHHHHHHH
Q 018743           72 IKSCTKFHR--FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH---PDIFTLNSMISAY  146 (351)
Q Consensus        72 ~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~  146 (351)
                      ..-+.+..+  -+.+.+.+++=..... .....|..+.+--...|+.+-|..+++.=.......   .+..-+...+.-+
T Consensus       478 a~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka  556 (829)
T KOG2280|consen  478 ARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA  556 (829)
T ss_pred             HHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence            666555432  2233333332222212 234456667776777899888888876432211000   1112244455566


Q ss_pred             hcCCCHHHHHHHHHHHHhc-----------CCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHH--HHH----HcC
Q 018743          147 GNSGNIEKMEKWYNEFNLM-----------GVKADIQTLNILTKS--------YGRAGMYDKMRSVMD--FMQ----KRF  201 (351)
Q Consensus       147 ~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~--~~~----~~~  201 (351)
                      ...||.+-...++-.+...           ..+.....|.-+++-        +...++-.++...|.  ...    ..+
T Consensus       557 ies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~  636 (829)
T KOG2280|consen  557 IESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEG  636 (829)
T ss_pred             HhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcc
Confidence            6777776666655544321           112222233322221        111111112211111  100    012


Q ss_pred             CCCCHHhHHHHHHHHHhcCCHH---H-------HHHHHHHHH-HcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743          202 FFPTVVTYNIVIETFGKAGHIE---K-------MEEYFKKMK-HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS  270 (351)
Q Consensus       202 ~~~~~~~~~~l~~~~~~~~~~~---~-------a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  270 (351)
                      ..|+.   .....++.+.....   +       -+.+.+.+. +.|......+.+.-+..+...|+..+|.++-.+.+  
T Consensus       637 r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--  711 (829)
T KOG2280|consen  637 RIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--  711 (829)
T ss_pred             cchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--
Confidence            22222   23334444433311   1       111222222 12333444566667777888899999998877665  


Q ss_pred             CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743          271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM  337 (351)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  337 (351)
                        .||...|..=+.+++..++|++-+++-+...      .+.-|.-.+.+|.+.|+.++|.+++.+.
T Consensus       712 --ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv  770 (829)
T KOG2280|consen  712 --IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV  770 (829)
T ss_pred             --CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence              4588889888999999999998777655443      2445666777777888888877776544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=93.05  E-value=2.3  Score=31.13  Aligned_cols=13  Identities=15%  Similarity=0.353  Sum_probs=5.5

Q ss_pred             CCCHHHHHHHHHH
Q 018743          308 VPDNITFATMIQA  320 (351)
Q Consensus       308 ~p~~~~~~~l~~~  320 (351)
                      .|+..+|+.-+..
T Consensus       110 ~P~ne~Y~ksLe~  122 (186)
T PF06552_consen  110 DPNNELYRKSLEM  122 (186)
T ss_dssp             -TT-HHHHHHHHH
T ss_pred             CCCcHHHHHHHHH
Confidence            4555555544443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=93.05  E-value=13  Score=38.81  Aligned_cols=65  Identities=11%  Similarity=0.039  Sum_probs=51.6

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       276 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      ..+|-...+.....|.++.|...+-.+.+.+ .  +..+--.+..+.+.|+...|+.++++.++....
T Consensus      1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence            4578888888888999999998888877765 3  344555667789999999999999999865443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=92.98  E-value=0.47  Score=38.27  Aligned_cols=95  Identities=15%  Similarity=0.067  Sum_probs=62.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCH
Q 018743          213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV  292 (351)
Q Consensus       213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  292 (351)
                      ..-|.+.|.+++|++.|....... +-|+.++..-..+|.+...+..|+.-.......+-. -...|+.-+.+-...|..
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhH
Confidence            456778888888888888876652 337778877788888888888777766666544321 233455555555556666


Q ss_pred             HHHHHHHHHHHhcCCCCCH
Q 018743          293 EKMGELFLTMKERHCVPDN  311 (351)
Q Consensus       293 ~~a~~~~~~~~~~~~~p~~  311 (351)
                      .+|.+=++...+  +.|+.
T Consensus       182 ~EAKkD~E~vL~--LEP~~  198 (536)
T KOG4648|consen  182 MEAKKDCETVLA--LEPKN  198 (536)
T ss_pred             HHHHHhHHHHHh--hCccc
Confidence            666666666665  35553

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.79  E-value=3  Score=31.23  Aligned_cols=78  Identities=19%  Similarity=0.133  Sum_probs=50.6

Q ss_pred             HhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHcCCHH
Q 018743          252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER---HCVPDNITFATMIQAYNALGMTE  328 (351)
Q Consensus       252 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~  328 (351)
                      .+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++.+..+.   +-.+|+..+.+|+..+.+.|+++
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            33344 456666666666555445555555555444 56778888887776643   23567778888888888888887


Q ss_pred             HHH
Q 018743          329 AAQ  331 (351)
Q Consensus       329 ~A~  331 (351)
                      .|-
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            774

>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion)

Probab=92.51  E-value=2  Score=28.20  Aligned_cols=79  Identities=19%  Similarity=0.194  Sum_probs=34.2

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 018743            9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL   88 (351)
Q Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   88 (351)
                      ..++|..+.+.+...+.. ...+--.-+..+.+.|++++|  +..-..   ...||...|..|-  -.+.|-.+++...+
T Consensus        21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~---~~~pdL~p~~AL~--a~klGL~~~~e~~l   92 (116)
T PF09477_consen   21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA--LLLPQC---HCYPDLEPWAALC--AWKLGLASALESRL   92 (116)
T ss_dssp             -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH--HHHHTT---S--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH--HHhccc---CCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence            445566666665554321 122222233445566666666  111111   1245555554443  23555555555555


Q ss_pred             HHHHHcC
Q 018743           89 AEMSYLG   95 (351)
Q Consensus        89 ~~~~~~~   95 (351)
                      .++...|
T Consensus        93 ~rla~~g   99 (116)
T PF09477_consen   93 TRLASSG   99 (116)
T ss_dssp             HHHCT-S
T ss_pred             HHHHhCC
Confidence            5555444

The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.43  E-value=0.54  Score=23.17  Aligned_cols=28  Identities=29%  Similarity=0.233  Sum_probs=17.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          278 FFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      .+..+...+...|++++|++.|++..+.
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4555666677777777777777766653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=92.33  E-value=1.6  Score=28.40  Aligned_cols=47  Identities=4%  Similarity=0.051  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743           83 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                      +..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.+..+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34444555555555566666666666666666666666666665554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.20  E-value=0.42  Score=24.98  Aligned_cols=27  Identities=15%  Similarity=0.330  Sum_probs=15.0

Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHHHHH
Q 018743          101 VTYNTIIDGYGKAKKFEEMESSFSAMV  127 (351)
Q Consensus       101 ~~~~~l~~~~~~~~~~~~a~~~~~~~~  127 (351)
                      .+++.|...|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            345555566666666666666665554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.75  E-value=6.9  Score=32.65  Aligned_cols=67  Identities=10%  Similarity=0.001  Sum_probs=51.7

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743          169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP---TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR  235 (351)
Q Consensus       169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  235 (351)
                      ....++..++..+.+.|.++.|...+..+...+...   .+...-.-+...-..|+..+|+..++.....
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            445678889999999999999999999988754211   3344445567777889999999999988873

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK11619 lytic murein transglycosylase; Provisional

Probab=91.66  E-value=11  Score=34.65  Aligned_cols=251  Identities=8%  Similarity=-0.009  Sum_probs=125.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcC
Q 018743           70 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS  149 (351)
Q Consensus        70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  149 (351)
                      ..+..+.+.+++......+..     .+.+...-.....+....|+.++|......+-..+..  .+..++.++..+.+.
T Consensus       104 ~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~--~p~~cd~l~~~~~~~  176 (644)
T PRK11619        104 RFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS--LPNACDKLFSVWQQS  176 (644)
T ss_pred             HHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CChHHHHHHHHHHHc
Confidence            334445566676666652211     1445555455667777778877776666666444322  334566676666655


Q ss_pred             CCHHHHH--HHHHHHHhcCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 018743          150 GNIEKME--KWYNEFNLMGVKADIQTLNILTKSYGR------------AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET  215 (351)
Q Consensus       150 ~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  215 (351)
                      |......  +-+..+...|   +......+...+..            ..+...+...+..     ..|+...-..++.+
T Consensus       177 g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~  248 (644)
T PRK11619        177 GKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVA  248 (644)
T ss_pred             CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHH
Confidence            5433321  1122222222   11111222221100            0111111111111     11222111111112


Q ss_pred             H--HhcCCHHHHHHHHHHHHHcC-CCccH--HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743          216 F--GKAGHIEKMEEYFKKMKHRG-MKPNS--ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG  290 (351)
Q Consensus       216 ~--~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  290 (351)
                      +  ....+.+.|..++....... ..+..  .....+.......+...++...++......  .+......-++.-...+
T Consensus       249 l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~  326 (644)
T PRK11619        249 FASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTG  326 (644)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHcc
Confidence            1  23456688888888764432 22222  223344433334332556666666544332  24445555566666889


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 018743          291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI  338 (351)
Q Consensus       291 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  338 (351)
                      +++.+...+..|.... .-...-.--+.+++...|+.++|...|+++.
T Consensus       327 dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a  373 (644)
T PRK11619        327 DRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM  373 (644)
T ss_pred             CHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            9999988888886532 2233444456777778999999999998874

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.65  E-value=0.066  Score=37.98  Aligned_cols=122  Identities=16%  Similarity=0.134  Sum_probs=75.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743          211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG  290 (351)
Q Consensus       211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  290 (351)
                      .++..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++....       .-...+++.|.+.|
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG   84 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence            45667777788888888888888766556677888888888888777777777762221       22345677778888


Q ss_pred             CHHHHHHHHHHHHhcC--CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743          291 DVEKMGELFLTMKERH--CV--PDNITFATMIQAYNALGMTEAAQNLENKMIA  339 (351)
Q Consensus       291 ~~~~a~~~~~~~~~~~--~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  339 (351)
                      .+++|.-++.++....  +.  -....+...+..+.+.++.+-...+.+..++
T Consensus        85 l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~  137 (143)
T PF00637_consen   85 LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLD  137 (143)
T ss_dssp             SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            8888888887755322  11  1223344444555555554444444444433

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.35  E-value=4  Score=36.00  Aligned_cols=103  Identities=16%  Similarity=0.116  Sum_probs=71.2

Q ss_pred             HHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh
Q 018743           37 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF  116 (351)
Q Consensus        37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (351)
                      ....+.|+++.|.++..+..       +..-|..|.++....+++..|.+.|.....         |..|+-.+...|+-
T Consensus       645 elal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~  708 (794)
T KOG0276|consen  645 ELALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNA  708 (794)
T ss_pred             hhhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCCh
Confidence            34457889999988776543       455699999999999999999998887654         34566667777777


Q ss_pred             HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 018743          117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF  162 (351)
Q Consensus       117 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  162 (351)
                      +....+-....+.+  +.+. +|    .+|...|+++++.+++..-
T Consensus       709 ~~l~~la~~~~~~g--~~N~-AF----~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  709 EGLAVLASLAKKQG--KNNL-AF----LAYFLSGDYEECLELLIST  747 (794)
T ss_pred             hHHHHHHHHHHhhc--ccch-HH----HHHHHcCCHHHHHHHHHhc
Confidence            66555555554443  3333 22    3455678998888877654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.23  E-value=5  Score=30.05  Aligned_cols=91  Identities=14%  Similarity=0.027  Sum_probs=49.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 018743          181 YGRAGMYDKMRSVMDFMQKRFFFPT----VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL  256 (351)
Q Consensus       181 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  256 (351)
                      +.+.|++++|..-|......-+...    ...|..-..++.+.+.++.|+.--.+.++.+ +........-..+|.+...
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek  183 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK  183 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence            4456666666666666555422211    1234444455666666666666666666553 2223333333455666666


Q ss_pred             HhHHHHHHHHhhhcCC
Q 018743          257 IMKVDSILRQVENSDV  272 (351)
Q Consensus       257 ~~~a~~~~~~~~~~~~  272 (351)
                      +++|+.-|..+.+..+
T Consensus       184 ~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  184 YEEALEDYKKILESDP  199 (271)
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            7777777776666543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.21  E-value=3.5  Score=30.89  Aligned_cols=80  Identities=14%  Similarity=0.081  Sum_probs=59.2

Q ss_pred             HHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHhhcC
Q 018743           38 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL---GIECSAVTYNTIIDGYGKAK  114 (351)
Q Consensus        38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~  114 (351)
                      .+.+.|+ +.|.+.|-.+.. .+.--++.....|...|. ..|.+++..++....+.   +-.+|+..+.+|+..+.+.|
T Consensus       116 ~Wsr~~d-~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~  192 (203)
T PF11207_consen  116 HWSRFGD-QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK  192 (203)
T ss_pred             HhhccCc-HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence            3455565 678888888887 444445555555555554 67889999999887654   33678999999999999999


Q ss_pred             ChHHHH
Q 018743          115 KFEEME  120 (351)
Q Consensus       115 ~~~~a~  120 (351)
                      +++.|-
T Consensus       193 ~~e~AY  198 (203)
T PF11207_consen  193 NYEQAY  198 (203)
T ss_pred             chhhhh
Confidence            998874

>smart00028 TPR Tetratricopeptide repeats

Probab=91.21  E-value=0.52  Score=22.37  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743          313 TFATMIQAYNALGMTEAAQNLENKMIAMK  341 (351)
Q Consensus       313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  341 (351)
                      .|..+...+...|+++.|...+++.++..
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~   31 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELD   31 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            34455555666666666666666655543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.17  E-value=4.5  Score=29.43  Aligned_cols=34  Identities=12%  Similarity=0.251  Sum_probs=17.7

Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018743          156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK  189 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  189 (351)
                      .++++.+.+.+++|+...+..+++.+.+.|++..
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~   47 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ   47 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            3444444455555555555555555555555443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.14  E-value=5.4  Score=30.31  Aligned_cols=28  Identities=18%  Similarity=0.223  Sum_probs=16.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          278 FFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      +|--+...+...|+.++|..+|+-.+..
T Consensus       239 tyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         239 TYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            4555555556666666666666655544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.86  E-value=0.49  Score=21.91  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=12.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHH
Q 018743          315 ATMIQAYNALGMTEAAQNLEN  335 (351)
Q Consensus       315 ~~l~~~~~~~g~~~~A~~~~~  335 (351)
                      ..+..++...|++++|..+++
T Consensus         5 ~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHHh
Confidence            345555666666666665554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.83  E-value=0.41  Score=25.73  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=13.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Q 018743          317 MIQAYNALGMTEAAQNLENKMIA  339 (351)
Q Consensus       317 l~~~~~~~g~~~~A~~~~~~~~~  339 (351)
                      +..+|...|+.+.|++++++++.
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            44556666666666666666553

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=90.70  E-value=3  Score=28.40  Aligned_cols=59  Identities=12%  Similarity=0.269  Sum_probs=37.0

Q ss_pred             HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743          259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI  318 (351)
Q Consensus       259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  318 (351)
                      +..+-+..+...++.|++.+....+++|-+.+|+..|.++|+..+.. +.+....|-.++
T Consensus        67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v  125 (149)
T KOG4077|consen   67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV  125 (149)
T ss_pred             HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence            34455566666677777777777777777777777777777776643 232333344443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.49  E-value=0.62  Score=22.71  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=16.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          281 CIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       281 ~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      .+..++.+.|++++|.+.|+++++.
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4555666667777777777776654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.34  E-value=13  Score=33.16  Aligned_cols=130  Identities=16%  Similarity=0.144  Sum_probs=76.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 018743          139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK  218 (351)
Q Consensus       139 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  218 (351)
                      .+.++..+.+.|-.++|++         +.+|....   .....+.|+++.|.++..+..      +..-|..|.++..+
T Consensus       617 rt~va~Fle~~g~~e~AL~---------~s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~  678 (794)
T KOG0276|consen  617 RTKVAHFLESQGMKEQALE---------LSTDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS  678 (794)
T ss_pred             hhhHHhHhhhccchHhhhh---------cCCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence            4445555555555555543         23333321   233345677777766654432      45567778888888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHH
Q 018743          219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL  298 (351)
Q Consensus       219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  298 (351)
                      .+++..|.+.|.....         |..|+-.+...|+.+....+-....+.|.. |     ...-++...|+++++.++
T Consensus       679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~l  743 (794)
T KOG0276|consen  679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLEL  743 (794)
T ss_pred             cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHH
Confidence            8888888777766443         345555666667766555555555554432 2     333456677888888777


Q ss_pred             HHH
Q 018743          299 FLT  301 (351)
Q Consensus       299 ~~~  301 (351)
                      +..
T Consensus       744 Li~  746 (794)
T KOG0276|consen  744 LIS  746 (794)
T ss_pred             HHh
Confidence            654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=90.32  E-value=1  Score=33.98  Aligned_cols=77  Identities=14%  Similarity=0.065  Sum_probs=45.4

Q ss_pred             HHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHH
Q 018743           33 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG--IECSAVTYNTIIDGY  110 (351)
Q Consensus        33 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~  110 (351)
                      +..++.+.+.+.+++++...+.-.+..  +.|..+-..+++.++-.|++++|..-++-.-...  ..+-..+|..++.+-
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e   82 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE   82 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence            344556666677777777666555421  3345556666777777777777776666554432  223455666666654


Q ss_pred             h
Q 018743          111 G  111 (351)
Q Consensus       111 ~  111 (351)
                      .
T Consensus        83 a   83 (273)
T COG4455          83 A   83 (273)
T ss_pred             H
Confidence            4

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.08  E-value=14  Score=33.29  Aligned_cols=279  Identities=13%  Similarity=0.081  Sum_probs=153.7

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HhccCChHHHHHHHHHhhcc------CCCCccHHHHHHHHHHHHhc-
Q 018743            9 QPEQASLLFEVMLSDGLKPSVDVYTALVSA---YGQSGLLDEAFSTINDMKSV------SDCKPDVYTYSILIKSCTKF-   78 (351)
Q Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~-   78 (351)
                      +...|.++++...+.|.. .......++..   +....+.+.|+.+|+...+.      .+   +......+..+|.+. 
T Consensus       227 ~~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~  302 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL  302 (552)
T ss_pred             hhhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence            357788999988887532 22222222222   33566899999999988651      12   222355566666553 


Q ss_pred             ---C-CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh-cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh--cCCC
Q 018743           79 ---H-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG--NSGN  151 (351)
Q Consensus        79 ---~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~  151 (351)
                         . +...|..++....+.| .|+.......+..... ..+...|.++|....+.+  .+...-+..++....  ...+
T Consensus       303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  303 GVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERN  379 (552)
T ss_pred             CCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCC
Confidence               2 6788999999999888 4565554444333333 356789999999997764  223222222222222  3457


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH----HHh----cCCHH
Q 018743          152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET----FGK----AGHIE  223 (351)
Q Consensus       152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~----~~~~~  223 (351)
                      ...|..++.+..+.| .|....-...+..+.. +.++.+...+..+...+.. ...+-...+..    ...    ..+.+
T Consensus       380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~  456 (552)
T KOG1550|consen  380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLE  456 (552)
T ss_pred             HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchh
Confidence            889999999998887 4443333333344444 7777777777766665433 22211111111    111    22456


Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH----HhcCCHHHH
Q 018743          224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKA----GLIMKVDSILRQVENSDVILDTPFFNCIISAY----GQAGDVEKM  295 (351)
Q Consensus       224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a  295 (351)
                      .+...+......|   +......+...|...    .+++.+...+......+   ....| .+...+    .-.. +..|
T Consensus       457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~-nlg~~~e~g~g~~~-~~~a  528 (552)
T KOG1550|consen  457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALF-NLGYMHEHGEGIKV-LHLA  528 (552)
T ss_pred             HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHh-hhhhHHhcCcCcch-hHHH
Confidence            6666666666554   334444444444332    24566666666555443   11222 122111    1122 5666


Q ss_pred             HHHHHHHHhc
Q 018743          296 GELFLTMKER  305 (351)
Q Consensus       296 ~~~~~~~~~~  305 (351)
                      .++++...+.
T Consensus       529 ~~~~~~~~~~  538 (552)
T KOG1550|consen  529 KRYYDQASEE  538 (552)
T ss_pred             HHHHHHHHhc
Confidence            7777766654

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=89.95  E-value=8.4  Score=30.56  Aligned_cols=87  Identities=17%  Similarity=0.186  Sum_probs=40.6

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----
Q 018743          143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK----  218 (351)
Q Consensus       143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  218 (351)
                      |++++..++|.+++.+.-+.-+..-+....+...-|-.|.+.+++..+.++-.......-.-+...|..+++.|..    
T Consensus        90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl  169 (309)
T PF07163_consen   90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL  169 (309)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence            4555555555555554444332222222334444444555566655555555554443222223335554444433    


Q ss_pred             -cCCHHHHHHHH
Q 018743          219 -AGHIEKMEEYF  229 (351)
Q Consensus       219 -~~~~~~a~~~~  229 (351)
                       .|.+++|+++.
T Consensus       170 PLG~~~eAeelv  181 (309)
T PF07163_consen  170 PLGHFSEAEELV  181 (309)
T ss_pred             ccccHHHHHHHH
Confidence             45666665554

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.67  E-value=3.1  Score=25.68  Aligned_cols=49  Identities=10%  Similarity=0.047  Sum_probs=31.0

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743          288 QAGDVEKMGELFLTMKERHCVPD--NITFATMIQAYNALGMTEAAQNLENK  336 (351)
Q Consensus       288 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~  336 (351)
                      ...+.++|+..|....+.-..|.  -.++..++++|+..|++.+++++.-.
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667777777777765432222  12556677777778877777665543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=89.39  E-value=11  Score=31.13  Aligned_cols=97  Identities=10%  Similarity=0.010  Sum_probs=47.8

Q ss_pred             CCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743          168 KADIQTLNILTKSYGRAGM------------YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR  235 (351)
Q Consensus       168 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  235 (351)
                      +-|..+|..++..--..-.            .+.-+.++++..+.++ .+......++..+.+..+.+...+.|+++...
T Consensus        16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~   94 (321)
T PF08424_consen   16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK   94 (321)
T ss_pred             cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4566666666654332211            2333445555555432 24455555555555555666666666666554


Q ss_pred             CCCccHHHHHHHHHHHHh---cCCHhHHHHHHHH
Q 018743          236 GMKPNSITYCSLVSAYSK---AGLIMKVDSILRQ  266 (351)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~  266 (351)
                      . +-+...|...+.....   .-.++....+|.+
T Consensus        95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~  127 (321)
T PF08424_consen   95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEK  127 (321)
T ss_pred             C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            2 2244555555544332   2234455555544

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.34  E-value=4.7  Score=30.67  Aligned_cols=132  Identities=11%  Similarity=0.037  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc--cCHHhHHHHHHH
Q 018743          208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI--LDTPFFNCIISA  285 (351)
Q Consensus       208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~  285 (351)
                      |.+..++.+.+.+...+++...++-++.. +.|...-..+++.++-.|++++|..-++-.-+..+.  +....|..++.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            34556778888999999999998888774 556777888999999999999999888876654332  344566666654


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCC-CHHHHH-HHHHHHH-HcC-CHHHHHHHHHHHHHhcccCCC
Q 018743          286 YGQAGDVEKMGELFLTMKERHCVP-DNITFA-TMIQAYN-ALG-MTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       286 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~-~l~~~~~-~~g-~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      -.-..      ++|.-=..-|+.- +...|. .+..+.. +.+ .-+.+..+-+...+..+.+..
T Consensus        82 ea~R~------evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG  140 (273)
T COG4455          82 EAARN------EVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG  140 (273)
T ss_pred             HHHHH------HHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence            32111      1222111112211 223344 3333333 333 445566666777777766543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=89.31  E-value=5.6  Score=27.62  Aligned_cols=68  Identities=9%  Similarity=-0.041  Sum_probs=32.7

Q ss_pred             CccHHHHHHHHHHHHhcCC---HhHHHHHHHHhhh-cCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          238 KPNSITYCSLVSAYSKAGL---IMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       238 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      .++..+-..+..++.+..+   ..+.+.+++.+.+ ..+.-......-|.-++.+.++++.+.++.+.+.+.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~  100 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET  100 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence            3444444455555554432   3345555555554 222212223333444555666666666666655543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=88.92  E-value=3.6  Score=33.55  Aligned_cols=94  Identities=14%  Similarity=0.032  Sum_probs=66.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 018743          178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI  257 (351)
Q Consensus       178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  257 (351)
                      ..-|.+.|.+++|+..|.......+. +++++..-..+|.+..++..|..--...+..+ ..-...|..-+.+-...|..
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence            35688999999999999987765332 78888888889999999988877666665543 22233455555555556677


Q ss_pred             hHHHHHHHHhhhcCCc
Q 018743          258 MKVDSILRQVENSDVI  273 (351)
Q Consensus       258 ~~a~~~~~~~~~~~~~  273 (351)
                      .+|.+-++...+..+.
T Consensus       182 ~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  182 MEAKKDCETVLALEPK  197 (536)
T ss_pred             HHHHHhHHHHHhhCcc
Confidence            7777777776665443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.87  E-value=1.7  Score=21.40  Aligned_cols=28  Identities=29%  Similarity=0.265  Sum_probs=21.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          278 FFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      +|..+...+...|++++|.+.|++..+.
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5667777888888888888888887753

...

>PRK09687 putative lyase; Provisional

Probab=88.85  E-value=11  Score=30.40  Aligned_cols=234  Identities=12%  Similarity=0.019  Sum_probs=114.7

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh----HHHHHHHHHHHhcCCCCCCHh
Q 018743           62 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF----EEMESSFSAMVESGGCHPDIF  137 (351)
Q Consensus        62 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~  137 (351)
                      .+|.......+.++...|.. .+...+..+...   ++...-...+.++.+.|+.    .++...+..+...   .++..
T Consensus        34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~  106 (280)
T PRK09687         34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSAC  106 (280)
T ss_pred             CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHH
Confidence            34555555555555555542 233333333332   2444444445555555542    3455666555322   34444


Q ss_pred             HHHHHHHHHhcCCCH-----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 018743          138 TLNSMISAYGNSGNI-----EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV  212 (351)
Q Consensus       138 ~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  212 (351)
                      +-...+.++...+..     ..+...+.....   .++..+-...+.++.+.++. .+...+-.+...   ++...-...
T Consensus       107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A  179 (280)
T PRK09687        107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWA  179 (280)
T ss_pred             HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHH
Confidence            444444444443321     122333322222   33555555666666666653 344444444432   344444444


Q ss_pred             HHHHHhcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743          213 IETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD  291 (351)
Q Consensus       213 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  291 (351)
                      +.++...+ ..+.+...+..+..   .++..+-...+.++.+.|+. .+...+-...+.+   +  .....+.++...|.
T Consensus       180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~  250 (280)
T PRK09687        180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGD  250 (280)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCC
Confidence            55555442 23455555555553   34566666677777777764 4444444444332   1  23356667777777


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743          292 VEKMGELFLTMKERHCVPDNITFATMIQAY  321 (351)
Q Consensus       292 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  321 (351)
                      . +|...+..+.+.  .||...-...+.++
T Consensus       251 ~-~a~p~L~~l~~~--~~d~~v~~~a~~a~  277 (280)
T PRK09687        251 K-TLLPVLDTLLYK--FDDNEIITKAIDKL  277 (280)
T ss_pred             H-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence            4 567777776653  33555544444444

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=88.83  E-value=1.7  Score=24.50  Aligned_cols=29  Identities=24%  Similarity=0.177  Sum_probs=13.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 018743          283 ISAYGQAGDVEKMGELFLTMKERHCVPDNIT  313 (351)
Q Consensus       283 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  313 (351)
                      .-++.+.|++++|.+..+.+.+.  .|+..-
T Consensus         8 Aig~ykl~~Y~~A~~~~~~lL~~--eP~N~Q   36 (53)
T PF14853_consen    8 AIGHYKLGEYEKARRYCDALLEI--EPDNRQ   36 (53)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHH--TTS-HH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhh--CCCcHH
Confidence            33455555555555555555542  444443

>PRK09687 putative lyase; Provisional

Probab=88.50  E-value=12  Score=30.26  Aligned_cols=234  Identities=10%  Similarity=-0.022  Sum_probs=146.5

Q ss_pred             CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHh
Q 018743           26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF----DLIEKILAEMSYLGIECSAV  101 (351)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~  101 (351)
                      .++..+....+.++...|. +++...+..+..    .+|...-...+.++...|+.    .++...+..+...  .++..
T Consensus        34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~  106 (280)
T PRK09687         34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC  106 (280)
T ss_pred             CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence            3467777777888887775 445555555554    45666677777788888863    5677778777443  35655


Q ss_pred             HHHHHHHHHhhcCC-----hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018743          102 TYNTIIDGYGKAKK-----FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI  176 (351)
Q Consensus       102 ~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  176 (351)
                      +-...+.++...+.     ...+...+.....    .++..+-...+.++.+.++. .+...+-.+..   .++..+-..
T Consensus       107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~----D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~  178 (280)
T PRK09687        107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF----DKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNW  178 (280)
T ss_pred             HHHHHHHHHhcccccccccchHHHHHHHHHhh----CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHH
Confidence            55555666555432     1234444444432    33556666777888888874 56666666654   345556666


Q ss_pred             HHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 018743          177 LTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG  255 (351)
Q Consensus       177 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  255 (351)
                      -+.++.+.+ ....+...+..+..   .++...-...+.++.+.++. .++..+-...+.+   +  .....+.++...|
T Consensus       179 A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig  249 (280)
T PRK09687        179 AAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELG  249 (280)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcC
Confidence            666666653 23456665555554   34666677788888888884 5666666666543   2  2356778888888


Q ss_pred             CHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743          256 LIMKVDSILRQVENSDVILDTPFFNCIISAY  286 (351)
Q Consensus       256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  286 (351)
                      +. +|...+..+.+..  ||..+-...+.++
T Consensus       250 ~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~  277 (280)
T PRK09687        250 DK-TLLPVLDTLLYKF--DDNEIITKAIDKL  277 (280)
T ss_pred             CH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence            86 6888888877643  3665555555544

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.43  E-value=0.15  Score=36.16  Aligned_cols=79  Identities=13%  Similarity=0.244  Sum_probs=39.6

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      +.+.+.++.....++.+...+...+....+.++..|++.++.++..++++...   ...     ...+++.|.+.|.+++
T Consensus        17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd-----~~~~~~~c~~~~l~~~   88 (143)
T PF00637_consen   17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYD-----LDKALRLCEKHGLYEE   88 (143)
T ss_dssp             CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS------CTHHHHHHHTTTSHHH
T ss_pred             HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccC-----HHHHHHHHHhcchHHH
Confidence            44455555666666666655444456666666666666655555555554211   111     2234444555555555


Q ss_pred             HHHHHHH
Q 018743           84 IEKILAE   90 (351)
Q Consensus        84 a~~~~~~   90 (351)
                      +.-++.+
T Consensus        89 a~~Ly~~   95 (143)
T PF00637_consen   89 AVYLYSK   95 (143)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            5554444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.14  E-value=2  Score=23.11  Aligned_cols=22  Identities=14%  Similarity=0.323  Sum_probs=10.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 018743          213 IETFGKAGHIEKMEEYFKKMKH  234 (351)
Q Consensus       213 ~~~~~~~~~~~~a~~~~~~~~~  234 (351)
                      ..+|...|+.+.|.+++++...
T Consensus         6 A~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         6 ARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHcCChHHHHHHHHHHHH
Confidence            3444444444444444444443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=87.78  E-value=14  Score=30.47  Aligned_cols=90  Identities=8%  Similarity=0.041  Sum_probs=46.4

Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHhccCC------------hHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHH
Q 018743           17 FEVMLSDGLKPSVDVYTALVSAYGQSGL------------LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI   84 (351)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   84 (351)
                      |++..+..+. |+.+|-.++..--..-.            .+.-+.++++..+.  .+.+...+...+..+.+..+.+..
T Consensus         8 l~~~v~~~P~-di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l   84 (321)
T PF08424_consen    8 LNRRVRENPH-DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKL   84 (321)
T ss_pred             HHHHHHhCcc-cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHH
Confidence            3444444444 78888877764322111            23445556665542  133444455555556666666666


Q ss_pred             HHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743           85 EKILAEMSYLGIECSAVTYNTIIDGY  110 (351)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (351)
                      .+-++++.... +-+...|...+...
T Consensus        85 ~~~we~~l~~~-~~~~~LW~~yL~~~  109 (321)
T PF08424_consen   85 AKKWEELLFKN-PGSPELWREYLDFR  109 (321)
T ss_pred             HHHHHHHHHHC-CCChHHHHHHHHHH
Confidence            66666665553 22455555555443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.66  E-value=8  Score=27.42  Aligned_cols=51  Identities=8%  Similarity=-0.028  Sum_probs=25.3

Q ss_pred             hcCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743           77 KFHRFDLIEKILAEMSYLGIE-CSAVTYNTIIDGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                      ..++.+.+..+++.|.-.... +...++.  ...+...|+|.+|..+|+.+.+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence            355666666666665543211 1122222  23345566666666666666444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=87.30  E-value=13  Score=29.53  Aligned_cols=86  Identities=12%  Similarity=0.098  Sum_probs=59.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh-
Q 018743          212 VIETFGKAGHIEKMEEYFKKMKHR--GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ-  288 (351)
Q Consensus       212 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  288 (351)
                      =|.+++..+++.++....-+--+.  .++|  .....-|-.|.+.+.+..+.++-....+..-.-+..-|..++..|.. 
T Consensus        89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~  166 (309)
T PF07163_consen   89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH  166 (309)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence            378888999999988766554332  2444  44455555688889998888888887754333344457777766655 


Q ss_pred             ----cCCHHHHHHHH
Q 018743          289 ----AGDVEKMGELF  299 (351)
Q Consensus       289 ----~g~~~~a~~~~  299 (351)
                          .|.+++|+++.
T Consensus       167 VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  167 VLLPLGHFSEAEELV  181 (309)
T ss_pred             HHhccccHHHHHHHH
Confidence                58999998877

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=87.25  E-value=13  Score=29.59  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=15.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 018743          316 TMIQAYNALGMTEAAQNLENKMIA  339 (351)
Q Consensus       316 ~l~~~~~~~g~~~~A~~~~~~~~~  339 (351)
                      -++..+.+.|.+.+|+.+.+.+..
T Consensus       130 Kli~l~y~~~~YsdalalIn~ll~  153 (421)
T COG5159         130 KLIYLLYKTGKYSDALALINPLLH  153 (421)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHH
Confidence            455667777888777776665543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=86.85  E-value=10  Score=27.89  Aligned_cols=30  Identities=20%  Similarity=-0.031  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 018743           10 PEQASLLFEVMLSDGLKPSVDVYTALVSAYG   40 (351)
Q Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   40 (351)
                      |+.|.+.++.-...++. |...++.-..++.
T Consensus         7 FE~ark~aea~y~~nP~-DadnL~~WG~ALL   36 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPL-DADNLTNWGGALL   36 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHH
Confidence            45666666665555544 6665555544443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=86.47  E-value=26  Score=32.10  Aligned_cols=91  Identities=16%  Similarity=0.184  Sum_probs=46.2

Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH-HHhcCC-----------HHHHHHHHHHHHhcC-----C
Q 018743          245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA-YGQAGD-----------VEKMGELFLTMKERH-----C  307 (351)
Q Consensus       245 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~-----------~~~a~~~~~~~~~~~-----~  307 (351)
                      .....-+...|++++|..+|..+.+.+.  -....|.++.- ......           ...|..+.+.....+     +
T Consensus       418 ~~~A~~~e~~g~~~dAi~Ly~La~~~d~--vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~  495 (613)
T PF04097_consen  418 EQAAREAEERGRFEDAILLYHLAEEYDK--VLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKV  495 (613)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHTT-HHH--HHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhc
Confidence            3344456677888888888877664321  12233333332 222222           344444544443321     1


Q ss_pred             C-CCHHHHHHHHHH-----HHHcCCHHHHHHHHHHH
Q 018743          308 V-PDNITFATMIQA-----YNALGMTEAAQNLENKM  337 (351)
Q Consensus       308 ~-p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~  337 (351)
                      . .+..|+..|++.     +...|+++.|++.++++
T Consensus       496 ~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L  531 (613)
T PF04097_consen  496 SRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL  531 (613)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence            1 123455555543     55789999999888765

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=86.31  E-value=7.1  Score=25.45  Aligned_cols=86  Identities=13%  Similarity=0.115  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 018743           80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY  159 (351)
Q Consensus        80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  159 (351)
                      ..++|..+-+.+...+- ....+-..-+..+...|++++|..+.+..     ..||...|.++..  .+.|-.+++...+
T Consensus        20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl   91 (115)
T TIGR02508        20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRL   91 (115)
T ss_pred             HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence            34566666665554431 12222222234566777777777766654     4667766665543  3556666666666


Q ss_pred             HHHHhcCCCCCHHHH
Q 018743          160 NEFNLMGVKADIQTL  174 (351)
Q Consensus       160 ~~~~~~~~~~~~~~~  174 (351)
                      .++...| .|....|
T Consensus        92 ~rla~sg-~p~lq~F  105 (115)
T TIGR02508        92 NRLAASG-DPRLQTF  105 (115)
T ss_pred             HHHHhCC-CHHHHHH
Confidence            6666655 4444443

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=85.48  E-value=2.9  Score=25.78  Aligned_cols=46  Identities=17%  Similarity=0.161  Sum_probs=20.1

Q ss_pred             hcCChHHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHhcCCCHHHHHH
Q 018743          112 KAKKFEEMESSFSAMVESGGCHPDIF-TLNSMISAYGNSGNIEKMEK  157 (351)
Q Consensus       112 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~  157 (351)
                      ..++.++|+..|...+++..-+++.. ++..++.+++..|++.++++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~   64 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA   64 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555544422222211 33344455555555544444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=85.36  E-value=7.6  Score=26.54  Aligned_cols=87  Identities=15%  Similarity=0.253  Sum_probs=59.6

Q ss_pred             HHhCCCCCCHHHHHHHHHHHhccCChH--HHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 018743           20 MLSDGLKPSVDVYTALVSAYGQSGLLD--EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE   97 (351)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   97 (351)
                      ...+|.. +.+-++.--.-|.....++  +..+-++.+.. ..+.|++......+++|.+.+|+..|.++|+-++..- .
T Consensus        39 ~~~hg~e-t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-g  115 (149)
T KOG4077|consen   39 SMEHGPE-TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-G  115 (149)
T ss_pred             HhhcCcc-cHHHHHHHHHHHcCcccchHHHHHHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-c
Confidence            3445555 5666666555555544333  44455666666 6789999999999999999999999999999887552 3


Q ss_pred             CCHhHHHHHHHH
Q 018743           98 CSAVTYNTIIDG  109 (351)
Q Consensus        98 ~~~~~~~~l~~~  109 (351)
                      +....|-.++.-
T Consensus       116 ~~k~~Y~y~v~e  127 (149)
T KOG4077|consen  116 AQKQVYPYYVKE  127 (149)
T ss_pred             cHHHHHHHHHHH
Confidence            333456666554

>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH

Probab=85.26  E-value=9.2  Score=28.21  Aligned_cols=19  Identities=16%  Similarity=0.174  Sum_probs=9.2

Q ss_pred             HhccCChHHHHHHHHHhhc
Q 018743           39 YGQSGLLDEAFSTINDMKS   57 (351)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~   57 (351)
                      |.++|.+++|.+++++..+
T Consensus       121 Cm~~g~Fk~A~eiLkr~~~  139 (200)
T cd00280         121 CMENGEFKKAEEVLKRLFS  139 (200)
T ss_pred             HHhcCchHHHHHHHHHHhc
Confidence            4444555555555544443

Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=85.06  E-value=16  Score=28.38  Aligned_cols=116  Identities=15%  Similarity=0.028  Sum_probs=56.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCCHh
Q 018743          181 YGRAGMYDKMRSVMDFMQKRFFFPTVV-TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI-TYCSLVSAYSKAGLIM  258 (351)
Q Consensus       181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~  258 (351)
                      |.....++.|...|.+....  .|+.. -|..-+.++.+..+++.+..--.+.++.  .||.. ....+..+......++
T Consensus        20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642|consen   20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence            33444566666655554443  34442 3344455666666666666554444443  44433 2334444555566667


Q ss_pred             HHHHHHHHhh----hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743          259 KVDSILRQVE----NSDVILDTPFFNCIISAYGQAGDVEKMGELFL  300 (351)
Q Consensus       259 ~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  300 (351)
                      +|+..+.+..    ...+.+...+...|..+--..=...+..++.+
T Consensus        96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q  141 (284)
T KOG4642|consen   96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ  141 (284)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence            7777666652    23333334444444443333333333334333

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.64  E-value=15  Score=27.57  Aligned_cols=92  Identities=10%  Similarity=0.018  Sum_probs=61.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743          213 IETFGKAGHIEKMEEYFKKMKHRGMKP--NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG  290 (351)
Q Consensus       213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  290 (351)
                      ...+...+++++|...++.........  ...+--.|.+.....|.+++|...++.....+..  ......-...+...|
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg  173 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG  173 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence            455677888888888887766431111  1122234556677788888888888877665432  333444566788888


Q ss_pred             CHHHHHHHHHHHHhcC
Q 018743          291 DVEKMGELFLTMKERH  306 (351)
Q Consensus       291 ~~~~a~~~~~~~~~~~  306 (351)
                      +-++|..-|+...+.+
T Consensus       174 ~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         174 DKQEARAAYEKALESD  189 (207)
T ss_pred             chHHHHHHHHHHHHcc
Confidence            8888888888888764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=84.53  E-value=36  Score=32.01  Aligned_cols=227  Identities=12%  Similarity=0.044  Sum_probs=118.8

Q ss_pred             HhhcCChHHHHHHHHHHHhcCCC---CCCH---hHHHHHH-HHHhcCCCHHHHHHHHHHHHhcC----CCCCHHHHHHHH
Q 018743          110 YGKAKKFEEMESSFSAMVESGGC---HPDI---FTLNSMI-SAYGNSGNIEKMEKWYNEFNLMG----VKADIQTLNILT  178 (351)
Q Consensus       110 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~---~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~  178 (351)
                      .....++++|..++.++...-+.   .+..   ..++.+- ......|+++.|.++-+.....=    ..+....+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            34567889999888887544211   1111   1244332 33455788999998888765431    123345566777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHH---hHHHHH--HHHHhcCCH--HHHHHHHHHHHHc-----CC-CccHHHHH
Q 018743          179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVV---TYNIVI--ETFGKAGHI--EKMEEYFKKMKHR-----GM-KPNSITYC  245 (351)
Q Consensus       179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~~~~--~~a~~~~~~~~~~-----~~-~~~~~~~~  245 (351)
                      .+..-.|++++|..+.....+..-.-+..   .|..+.  ..+...|..  ++....+......     .. .+-..+..
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            78888899999999887765532222332   233332  234455632  2223333332221     10 11223445


Q ss_pred             HHHHHHHhc-CCHhHHHHHHHHhhhcCCccCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCHHHHHHHH
Q 018743          246 SLVSAYSKA-GLIMKVDSILRQVENSDVILDTPF--FNCIISAYGQAGDVEKMGELFLTMKERHCV----PDNITFATMI  318 (351)
Q Consensus       246 ~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~~l~  318 (351)
                      .+..++.+. +...++..-+.-.......|-...  +..|+......|+.++|...++++......    ++..+-...+
T Consensus       585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v  664 (894)
T COG2909         585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV  664 (894)
T ss_pred             HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence            555555541 111222222222222222222222  236778888899999999999988754322    2322222333


Q ss_pred             HH--HHHcCCHHHHHHHHHH
Q 018743          319 QA--YNALGMTEAAQNLENK  336 (351)
Q Consensus       319 ~~--~~~~g~~~~A~~~~~~  336 (351)
                      ..  ....|+...|.....+
T Consensus       665 ~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         665 KLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             hHHHhcccCCHHHHHHHHHh
Confidence            32  3356888877766655

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.53  E-value=17  Score=28.19  Aligned_cols=54  Identities=15%  Similarity=0.100  Sum_probs=29.8

Q ss_pred             CCHHHHHHHHHHHHHc--CCC---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743          220 GHIEKMEEYFKKMKHR--GMK---PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI  273 (351)
Q Consensus       220 ~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  273 (351)
                      .+++.|+..|+..-+-  |-.   .....+..+...-...+++.+|+++|+++....+.
T Consensus       128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~  186 (288)
T KOG1586|consen  128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD  186 (288)
T ss_pred             HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4555666666554331  111   11122333444445668888889988887766554

>PRK10941 hypothetical protein; Provisional

Probab=84.45  E-value=13  Score=29.71  Aligned_cols=61  Identities=11%  Similarity=-0.141  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      .+.+-.+|.+.++++.|.++.+.+....+. ++.-+.--.-.|.+.|.+..|..=++..++.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~  244 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ  244 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            345555667777777777777777766554 5555555556677777777777777776654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=84.35  E-value=8.8  Score=24.78  Aligned_cols=20  Identities=10%  Similarity=-0.041  Sum_probs=10.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 018743          284 SAYGQAGDVEKMGELFLTMK  303 (351)
Q Consensus       284 ~~~~~~g~~~~a~~~~~~~~  303 (351)
                      ......|++++|...+++.+
T Consensus        49 ~~~~~~G~~~~A~~~l~eAi   68 (94)
T PF12862_consen   49 ELHRRFGHYEEALQALEEAI   68 (94)
T ss_pred             HHHHHhCCHHHHHHHHHHHH
Confidence            34444555566555555554

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=84.23  E-value=3.3  Score=36.40  Aligned_cols=92  Identities=14%  Similarity=0.066  Sum_probs=69.4

Q ss_pred             hcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 018743          253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN  332 (351)
Q Consensus       253 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  332 (351)
                      ..|+...|.+.+.......+.-.-.....|.....+.|-.-+|-.++....... ...+.++..+.+++....+.+.|++
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~  697 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE  697 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence            357888888888776654333233345567777888888888888888877654 4466788888899999999999999


Q ss_pred             HHHHHHHhcccCC
Q 018743          333 LENKMIAMKENSG  345 (351)
Q Consensus       333 ~~~~~~~~~~~~~  345 (351)
                      .|+++++..+...
T Consensus       698 ~~~~a~~~~~~~~  710 (886)
T KOG4507|consen  698 AFRQALKLTTKCP  710 (886)
T ss_pred             HHHHHHhcCCCCh
Confidence            9999988877644

>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B

Probab=84.18  E-value=4.5  Score=23.72  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=13.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743          315 ATMIQAYNALGMTEAAQNLENKMIA  339 (351)
Q Consensus       315 ~~l~~~~~~~g~~~~A~~~~~~~~~  339 (351)
                      -.++.+|...|++++|.++++++..
T Consensus        27 LqvI~gllqlg~~~~a~eYi~~~~~   51 (62)
T PF14689_consen   27 LQVIYGLLQLGKYEEAKEYIKELSK   51 (62)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3445555555555555555555543

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=83.80  E-value=29  Score=30.39  Aligned_cols=165  Identities=15%  Similarity=0.164  Sum_probs=70.0

Q ss_pred             CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743           99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT  178 (351)
Q Consensus        99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  178 (351)
                      |.....+++..+..+-.+.-...+..++..-   ..+...+..++.+|... ..++-..+|+++.+..+ .|...-..|+
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa  139 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA  139 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence            4444444555555555555555555555443   23344455555555555 44445555555554332 1222222333


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHH
Q 018743          179 KSYGRAGMYDKMRSVMDFMQKRFFFP-----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNSITYCSLVSAYS  252 (351)
Q Consensus       179 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~  252 (351)
                      ..|-+ ++.+.+...|..+..+-++.     -...|..+...  -..+.+....+..++... |...-...+..+-.-|.
T Consensus       140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys  216 (711)
T COG1747         140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS  216 (711)
T ss_pred             HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence            33322 55555555555544432210     01122222211  122344444444444322 22222233334444455


Q ss_pred             hcCCHhHHHHHHHHhhhcC
Q 018743          253 KAGLIMKVDSILRQVENSD  271 (351)
Q Consensus       253 ~~g~~~~a~~~~~~~~~~~  271 (351)
                      ...++.+|++++..+.+.+
T Consensus       217 ~~eN~~eai~Ilk~il~~d  235 (711)
T COG1747         217 ENENWTEAIRILKHILEHD  235 (711)
T ss_pred             cccCHHHHHHHHHHHhhhc
Confidence            5555555555555555443

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=82.97  E-value=11  Score=28.28  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=19.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743          308 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       308 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  342 (351)
                      .|++.+|..++.++...|+.++|.++.+++...-|
T Consensus       141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            45555555555555555555555555555554444

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=82.51  E-value=21  Score=27.87  Aligned_cols=61  Identities=8%  Similarity=-0.029  Sum_probs=31.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       282 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      +.+++...|++-++++.-.+.... .+-|...|..-..+.+..-+.++|.+-|.++++.+|.
T Consensus       236 y~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  236 YCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence            334444555555555555555543 2234445555555555555555555555555555443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=82.42  E-value=33  Score=29.93  Aligned_cols=277  Identities=10%  Similarity=0.003  Sum_probs=130.6

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH--HHHHHHhhccCCCCcc-----------HHHHHHHH
Q 018743            6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA--FSTINDMKSVSDCKPD-----------VYTYSILI   72 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~~~~~~~-----------~~~~~~l~   72 (351)
                      ..+.++...++++.+...|.......+|.-...|.+.|..+..  ++-++.+.... ..|+           ...+-...
T Consensus        29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~-~~~~~~~~gld~~~~t~~~yn~a  107 (696)
T KOG2471|consen   29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADA-DAPGDVSSGLSLKQGTVMDYNFA  107 (696)
T ss_pred             CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhh-ccccchhcchhhhcchHHhhhhh
Confidence            3578899999999999988776677788888888888865532  23333332210 0111           11122222


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCH-----hHHHHHHHHHhhcCChHHHHHHHH---HHHhcCCCC-----------
Q 018743           73 KSCTKFHRFDLIEKILAEMSYLGIECSA-----VTYNTIIDGYGKAKKFEEMESSFS---AMVESGGCH-----------  133 (351)
Q Consensus        73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~-----------  133 (351)
                      -.+.....+..|.++...+...- .|-.     .........+....+.++|+.++.   ++.......           
T Consensus       108 Vi~yh~~~~g~a~~~~~~lv~r~-e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~  186 (696)
T KOG2471|consen  108 VIFYHHEENGSAMQLSSNLVSRT-ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNL  186 (696)
T ss_pred             eeeeeHhhcchHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhh
Confidence            23334445555555544443221 1111     111122334555666666666544   332221111           


Q ss_pred             -----CCHhHHHHH------------HHHHhcCCCHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018743          134 -----PDIFTLNSM------------ISAYGNSGNIEKMEKWYNE-FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD  195 (351)
Q Consensus       134 -----~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  195 (351)
                           |+...-..+            +..+....+...+.+-.+. |...+  .+......-...+.-.|++.+|.+++.
T Consensus       187 ~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~--~s~~~l~LKsq~eY~~gn~~kA~KlL~  264 (696)
T KOG2471|consen  187 LKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ--DSSMALLLKSQLEYAHGNHPKAMKLLL  264 (696)
T ss_pred             cccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC--CCcHHHHHHHHHHHHhcchHHHHHHHH
Confidence                 111111111            1111111111111111111 11111  111112222334556688888888775


Q ss_pred             HHHH---cCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCccH-----------HHHHHHHH
Q 018743          196 FMQK---RFFFPT-----VVTYNIVIETFGKAGHIEKMEEYFKKMKH-------RGMKPNS-----------ITYCSLVS  249 (351)
Q Consensus       196 ~~~~---~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-----------~~~~~l~~  249 (351)
                      ..--   .|...+     -..||.+.-.+.+.|.+..+..+|.+..+       .|++|..           .+|+ ..-
T Consensus       265 ~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN-cG~  343 (696)
T KOG2471|consen  265 VSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN-CGL  343 (696)
T ss_pred             hcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh-hhH
Confidence            5311   121111     12235555555666777777777766553       3433321           1222 233


Q ss_pred             HHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743          250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ  288 (351)
Q Consensus       250 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (351)
                      .|...|++-.|.+.|.+..+.-. .++..|-.+..+|.-
T Consensus       344 ~~Lh~grPl~AfqCf~~av~vfh-~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  344 LYLHSGRPLLAFQCFQKAVHVFH-RNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHH
Confidence            45567777777777777665432 367777777777764

>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH

Probab=81.77  E-value=16  Score=27.08  Aligned_cols=48  Identities=13%  Similarity=0.164  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHcCCCcc--HHHH-----HHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743          222 IEKMEEYFKKMKHRGMKPN--SITY-----CSLVSAYSKAGLIMKVDSILRQVEN  269 (351)
Q Consensus       222 ~~~a~~~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~  269 (351)
                      .+.|+.+|+.+.+.--.|.  ....     ...+..|.+.|.+++|.+++++...
T Consensus        85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~  139 (200)
T cd00280          85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS  139 (200)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence            5566666666655422221  1111     1223345555666666666655554

Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=81.30  E-value=11  Score=28.25  Aligned_cols=61  Identities=10%  Similarity=-0.032  Sum_probs=37.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743           69 SILIKSCTKFHRFDLIEKILAEMSYL-GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus        69 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                      ...+......++.+......+.+.+. ...|++.+|..++.++...|+.++|.++..++..-
T Consensus       112 ~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l  173 (193)
T PF11846_consen  112 AALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL  173 (193)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            33333333444444444333333221 22678888888888888888888888888888654

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat

Probab=80.40  E-value=12  Score=23.67  Aligned_cols=64  Identities=14%  Similarity=0.158  Sum_probs=32.7

Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHH
Q 018743           14 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI   84 (351)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   84 (351)
                      .++++.+.+.|+- +..-...+-.+--..|+.+.|.+++..+..    .|+.  |..++.++...|.-+-|
T Consensus        22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~r----g~~a--F~~Fl~aLreT~~~~LA   85 (88)
T cd08819          22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIVQ----KEGW--FSKFLQALRETEHHELA   85 (88)
T ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhcc----CCcH--HHHHHHHHHHcCchhhh
Confidence            4455555555544 333333333333344666666666666652    3443  55566666555554433

Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei

>PRK10941 hypothetical protein; Provisional

Probab=80.20  E-value=29  Score=27.83  Aligned_cols=77  Identities=10%  Similarity=-0.011  Sum_probs=52.0

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHH
Q 018743          104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYG  182 (351)
Q Consensus       104 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~  182 (351)
                      +.+-.+|.+.++++.|+.+.+.+..-.  |.++.-+.--.-.|.+.|.+..|..=++...+.. -.|+.......+....
T Consensus       185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~  262 (269)
T PRK10941        185 DTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE  262 (269)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence            455667788888888888888887763  4455556666667888888888888777776532 2345555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-16
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-15
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 82.9 bits (203), Expect = 2e-17
 Identities = 25/223 (11%), Positives = 72/223 (32%), Gaps = 4/223 (1%)

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           M              P    L  ++       +++  +    + +   +    Q L    
Sbjct: 75  MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134

Query: 179 KSYGRAGMYDKMRSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
           K             ++     +       T+  YN V+  + + G  +++      +K  
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194

Query: 236 GMKPNSITYCSLVSAYSKAGLIMK-VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           G+ P+ ++Y + +    +       ++  L Q+    + L   F   ++S   +A  ++ 
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + ++  T      +P  +  + +++   A     +   L   +
Sbjct: 255 VHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 79.1 bits (193), Expect = 4e-16
 Identities = 29/239 (12%), Positives = 72/239 (30%), Gaps = 11/239 (4%)

Query: 109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                K   ++E + S              L +       +  +          +    K
Sbjct: 100 QEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK 159

Query: 169 ---ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
                +   N +   + R G + ++  V+  ++     P +++Y   ++  G+       
Sbjct: 160 RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGT 219

Query: 226 -EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
            E   ++M   G+K  ++    L+S   +A ++  V  +         +      + ++ 
Sbjct: 220 IERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
                       +L L +K   C+          Q +  L       ++E   +  KE 
Sbjct: 280 DVYAKDGRVSYPKLHLPLKTLQCLF-------EKQLHMELASRVCVVSVEKPTLPSKEV 331

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 77.2 bits (188), Expect = 1e-15
 Identities = 20/201 (9%), Positives = 50/201 (24%), Gaps = 3/201 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS--VSDCKP 63
                +             L        A       +  L  A   +             
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            +  Y+ ++    +   F  +  +L  +   G+    ++Y   +   G+  +        
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ-TLNILTKSYG 182
              +   G          ++S    +  ++ + K    F+L         T  +L   Y 
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283

Query: 183 RAGMYDKMRSVMDFMQKRFFF 203
           + G     +  +     +  F
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLF 304

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 70.6 bits (171), Expect = 2e-13
 Identities = 41/355 (11%), Positives = 106/355 (29%), Gaps = 16/355 (4%)

Query: 6   KCKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
              Q   A  L  V           ++D+Y A++  + + G   E    +  +K  +   
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLT 197

Query: 63  PDVYTYSILIKSCTKFHRFD-LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           PD+ +Y+  ++   +  +    IE+ L +MS  G++  A+    ++    +A   + +  
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
                       P + T   +   Y   G +   +               + L++   S 
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT--LQCLFEKQLHMELASR 315

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
                 +K       ++        +               +   E         + P  
Sbjct: 316 VCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYP-- 373

Query: 242 ITYCSLVSAYSKAGLIMK-VDSILRQVENS----DVILDTPFFNCIISAYGQAGDVEKMG 296
             +  L+       ++++ + ++  Q E+       +    F   ++     +G V+ + 
Sbjct: 374 --FLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQ 431

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
             +            +    + + Y        A   +   + ++   GK L + 
Sbjct: 432 NHYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALREQPWPLPVQMELGKLLAEM 486

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 30/198 (15%), Positives = 61/198 (30%), Gaps = 51/198 (25%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           PS  + T L+S      +  +    +N +   S+ + +P   T SI            + 
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--------P--SIY 432

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------GCHPDIFT 138
            ++  ++           + +I+D Y   K F+                   G H     
Sbjct: 433 LELKVKLENE-----YALHRSIVDHYNIPKTFD--SDDLIPPYLDQYFYSHIGHH----- 480

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVK---------ADIQTLNILT--KSYGR---- 183
               +    +   +      + +F  +  K         A    LN L   K Y      
Sbjct: 481 ----LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 184 -AGMYDKM-RSVMDFMQK 199
               Y+++  +++DF+ K
Sbjct: 537 NDPKYERLVNAILDFLPK 554

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.95
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.93
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.93
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.93
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.92
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.91
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.9
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.9
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.89
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.88
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.88
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.88
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.87
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.87
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.86
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.85
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.83
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.82
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.82
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.82
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.82
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.81
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.81
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.81
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.8
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.79
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.79
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.79
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.79
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.79
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.78
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.78
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.78
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.78
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.78
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.78
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.77
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.77
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.76
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.76
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.75
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.74
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.74
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.74
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.74
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.72
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.72
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.72
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.71
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.71
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.71
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.68
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.68
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.68
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.68
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.68
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.68
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.67
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.65
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.64
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.63
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.61
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.58
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.58
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.57
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.56
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.56
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.53
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.53
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.53
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.53
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.52
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.49
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.45
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.44
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.42
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.39
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.39
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.38
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.38
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.37
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.36
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.35
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.35
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.35
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.35
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.34
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.34
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.32
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.31
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.31
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.29
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.29
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.28
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.28
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.27
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.27
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.26
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.26
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.25
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.21
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.19
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.18
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.18
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.17
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.14
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.13
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.13
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.12
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.1
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.1
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.07
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.05
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.03
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.03
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.03
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.02
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.02
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.01
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.01
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.0
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.99
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.99
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.99
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.98
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.97
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.96
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.95
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.95
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.93
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.92
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.91
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.9
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.89
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.88
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.87
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.87
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.86
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.86
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.85
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.84
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.83
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.81
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.8
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.78
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.77
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.76
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.73
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.72
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.72
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.72
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.72
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.7
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.7
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.68
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.67
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.66
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.66
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.66
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.62
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.62
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.61
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.58
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.56
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.56
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.55
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.54
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.53
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.44
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.43
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.38
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.38
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.32
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.29
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.27
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.21
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.2
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.19
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.19
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.17
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.15
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.13
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.97
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.8
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.75
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.66
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.58
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.56
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.53
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.48
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.45
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.43
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.42
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.36
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.35
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.29
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.24
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.15
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.11
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.03
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.0
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.95
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.92
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.64
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.53
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.36
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.27
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.27
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.21
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.19
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.04
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.86
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	95.84
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.78
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.62
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.45
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	95.29
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.18
2p58_C	116	Putative type III secretion protein YSCG; type III	94.88
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.83
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.76
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	94.67
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.54
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.44
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.13
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.75
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.37
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.22
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.15
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.87
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.65
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	92.23
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	90.67
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.65
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	90.15
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	89.89
2p58_C	116	Putative type III secretion protein YSCG; type III	89.6
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.32
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	86.87
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	86.29
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	85.94
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	84.42
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	82.55
2zu6_B	307	Programmed cell death protein 4; protein-protein c	81.25
3eiq_C	358	Programmed cell death protein 4; PDCD4, anti-oncog	80.63

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-34  Score=255.05  Aligned_cols=333  Identities=10%  Similarity=0.022  Sum_probs=297.7

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------------------------------HHHHhccCC
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL--------------------------------------VSAYGQSGL   44 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~   44 (351)
                      +|.+.|++++|+++|+++.+.++. +..++..+                                      +..|.+.|+
T Consensus       209 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  287 (597)
T 2xpi_A          209 VYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE  287 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch
Confidence            577899999999999999987654 55554444                                      445667899


Q ss_pred             hHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHH
Q 018743           45 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS  124 (351)
Q Consensus        45 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  124 (351)
                      +++|.++|+++.+.   +++..+|..++..+.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|.++++
T Consensus       288 ~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  363 (597)
T 2xpi_A          288 LRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISN  363 (597)
T ss_dssp             HHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            99999999999873   6899999999999999999999999999999876 5588899999999999999999999999


Q ss_pred             HHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 018743          125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP  204 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  204 (351)
                      ++.+.  .+.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+++.++..|.+.|++++|.++|+++.+.+. .
T Consensus       364 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~  439 (597)
T 2xpi_A          364 DLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-G  439 (597)
T ss_dssp             HHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-T
T ss_pred             HHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-c
Confidence            99876  36788899999999999999999999999998754 55788999999999999999999999999988644 3


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc----CCccC--HHh
Q 018743          205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS----DVILD--TPF  278 (351)
Q Consensus       205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~  278 (351)
                      +..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|..+|+++.+.    +..|+  ..+
T Consensus       440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~  518 (597)
T 2xpi_A          440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT  518 (597)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence            78899999999999999999999999999875 568899999999999999999999999999876    55666  789


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       279 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      |..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++++.+|..+.
T Consensus       519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~  585 (597)
T 2xpi_A          519 WANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM  585 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence            9999999999999999999999999874 457899999999999999999999999999999887653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.6e-34  Score=252.07  Aligned_cols=333  Identities=13%  Similarity=0.016  Sum_probs=222.2

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccC--------------CCCccHHHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS--------------DCKPDVYTYS   69 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~   69 (351)
                      |.+.|++++|..+|+.+...  ++++.+++.++.+|.+.|++++|+++|+++....              +.+++..+|+
T Consensus       127 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (597)
T 2xpi_A          127 YCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY  204 (597)
T ss_dssp             HHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHH
Confidence            44455555555555554332  3455555556666666666666666555322211              1233455666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCC-----------------------------------------------------
Q 018743           70 ILIKSCTKFHRFDLIEKILAEMSYLGI-----------------------------------------------------   96 (351)
Q Consensus        70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------------------------------   96 (351)
                      .++.++.+.|++++|.++|++|.+.+.                                                     
T Consensus       205 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (597)
T 2xpi_A          205 LRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSH  284 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcC
Confidence            666666666666666666666654331                                                     


Q ss_pred             -----------------CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 018743           97 -----------------ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY  159 (351)
Q Consensus        97 -----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  159 (351)
                                       +++..+++.++..|.+.|++++|.++|+++.+..  +.+..++..++.++.+.|++++|.+++
T Consensus       285 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~  362 (597)
T 2xpi_A          285 EDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLIS  362 (597)
T ss_dssp             HHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence                             1344444555555555555555555555554442  334444555555555555555555555


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 018743          160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP  239 (351)
Q Consensus       160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  239 (351)
                      +++.... +.+..++..++..|.+.|++++|.++|+++.+... .+..+|+.++..+.+.|++++|.++|+++.+.+ +.
T Consensus       363 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~  439 (597)
T 2xpi_A          363 NDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QG  439 (597)
T ss_dssp             HHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TT
T ss_pred             HHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence            5554432 45667778888888888888888888888776533 267788888888888888888888888888764 55


Q ss_pred             cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--HHH
Q 018743          240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER----HCVPD--NIT  313 (351)
Q Consensus       240 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~  313 (351)
                      +..++..++.+|.+.|++++|.++|+++.+..+. +..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+
T Consensus       440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~  518 (597)
T 2xpi_A          440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT  518 (597)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence            7778888888888888888888888888876554 7788888888888888888888888888765    55676  678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          314 FATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      |..++.+|.+.|++++|.+.++++++.+|..
T Consensus       519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  549 (597)
T 2xpi_A          519 WANLGHAYRKLKMYDAAIDALNQGLLLSTND  549 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            8888888888888888888888888877654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=6e-34  Score=242.63  Aligned_cols=185  Identities=15%  Similarity=0.185  Sum_probs=115.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCCCHHhH
Q 018743          139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM---------YDKMRSVMDFMQKRFFFPTVVTY  209 (351)
Q Consensus       139 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~  209 (351)
                      ++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.+.         .+.|.++|++|...|+.||..+|
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            444555555555555555555555555555555555555555544332         45566666666666666666666


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc
Q 018743          210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA  289 (351)
Q Consensus       210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  289 (351)
                      +.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~  188 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT  188 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743          290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNA  323 (351)
Q Consensus       290 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  323 (351)
                      |++++|.+++++|.+.|..|+..||+.++..|..
T Consensus       189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            6666666666666666666666666666666554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.3e-33  Score=240.47  Aligned_cols=206  Identities=13%  Similarity=0.116  Sum_probs=175.8

Q ss_pred             HHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCC---------H
Q 018743           12 QASLLFEVMLSDGLKPSVD-VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR---------F   81 (351)
Q Consensus        12 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~   81 (351)
                      .+..+.+.+.+.+..+++. .++.+|.+|++.|++++|+++|++|.+ .|+.||..+|+.+|.+|++.+.         .
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            4555666777777665554 588899999999999999999999998 7999999999999999987654         6


Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 018743           82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE  161 (351)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  161 (351)
                      +.|.++|++|...|+.||..||+.|+.+|++.|++++|.++|++|.+. |+.||..+|+.+|.+|++.|++++|.++|++
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999766 6999999999999999999999999999999


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 018743          162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA  219 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  219 (351)
                      |.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..||+.++..+...
T Consensus       166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999888753

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=6.6e-31  Score=220.17  Aligned_cols=328  Identities=10%  Similarity=0.097  Sum_probs=209.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 018743            7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK   86 (351)
Q Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   86 (351)
                      .|++++|...++...+..+. +..+|..+...+.+.|++++|++.|+++.+..  +.+..+|..+..++...|++++|..
T Consensus        46 ~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~  122 (388)
T 1w3b_A           46 CRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQ  122 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHH
Confidence            44444444444444443322 44455555555555555555555555554421  2233345555555555555555555


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 018743           87 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG  166 (351)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  166 (351)
                      .++++.+.. |.+...+..+...+...|++++|.+.|+++.+..  +.+..+|..+...+...|++++|...|+++.+.+
T Consensus       123 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  199 (388)
T 1w3b_A          123 AYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD  199 (388)
T ss_dssp             HHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            555555443 2233444455555555555555555555555542  3344555566666666666666666666665543


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 018743          167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS  246 (351)
Q Consensus       167 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  246 (351)
                       +.+...+..+...+...|++++|...+++.....+. +..++..+...+...|++++|...++++.+.+ +.+..++..
T Consensus       200 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~  276 (388)
T 1w3b_A          200 -PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCN  276 (388)
T ss_dssp             -TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence             334555666666666666666666666666554322 56777778888888888888888888888764 445677888


Q ss_pred             HHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 018743          247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM  326 (351)
Q Consensus       247 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  326 (351)
                      +...+.+.|++++|...++++.+..+. +..++..+...+...|++++|.+.++++.+. .+.+..++..+..++.+.|+
T Consensus       277 l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~  354 (388)
T 1w3b_A          277 LANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGK  354 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCC
Confidence            888888888888888888888877544 7778888888888888888888888888875 24456788888888888888


Q ss_pred             HHHHHHHHHHHHHhcccCC
Q 018743          327 TEAAQNLENKMIAMKENSG  345 (351)
Q Consensus       327 ~~~A~~~~~~~~~~~~~~~  345 (351)
                      +++|...++++++..|...
T Consensus       355 ~~~A~~~~~~a~~~~p~~~  373 (388)
T 1w3b_A          355 LQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             CHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHHHHHhhCCCCH
Confidence            8888888888888776543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=5.2e-30  Score=214.72  Aligned_cols=330  Identities=12%  Similarity=-0.004  Sum_probs=294.8

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      +.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+..  +.+..+|..+...+.+.|++++
T Consensus         9 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~   85 (388)
T 1w3b_A            9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHH
Confidence            45689999999999999887655 77888889999999999999999999988743  6678899999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN  163 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  163 (351)
                      |...|+++.+.. |.+..+|..+..++.+.|++++|.+.|+++.+..  +.+...+..+...+...|++++|.+.|+++.
T Consensus        86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A           86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            999999999875 5567789999999999999999999999998873  4556678888999999999999999999998


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 018743          164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT  243 (351)
Q Consensus       164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  243 (351)
                      ... +.+..++..+...+...|++++|...|+++....+. +...|..+...+...|++++|...+.+..... +.+..+
T Consensus       163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~  239 (388)
T 1w3b_A          163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV  239 (388)
T ss_dssp             HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred             HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence            764 556788999999999999999999999999887543 67889999999999999999999999998874 456889


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA  323 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  323 (351)
                      +..+...+...|++++|...++++.+.++. +..++..+..++.+.|++++|.+.|+++.+. .+.+..++..+...+..
T Consensus       240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~  317 (388)
T 1w3b_A          240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHH
Confidence            999999999999999999999999988765 6788999999999999999999999999986 35678899999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcccC
Q 018743          324 LGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       324 ~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      .|++++|...++++++..|..
T Consensus       318 ~g~~~~A~~~~~~al~~~p~~  338 (388)
T 1w3b_A          318 QGNIEEAVRLYRKALEVFPEF  338 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTC
T ss_pred             cCCHHHHHHHHHHHHhcCCCc
Confidence            999999999999999877654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.97  E-value=6.3e-27  Score=199.84  Aligned_cols=324  Identities=11%  Similarity=0.019  Sum_probs=265.8

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018743           11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE   90 (351)
Q Consensus        11 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   90 (351)
                      ..+...+..+....+. ++..+..++..+.+.|++++|+.+|+++.+..  +.+..+|..+..++...|++++|...+++
T Consensus         9 ~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   85 (450)
T 2y4t_A            9 SGVDLGTENLYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTK   85 (450)
T ss_dssp             --------------CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3445556666655444 78899999999999999999999999998742  55788899999999999999999999999


Q ss_pred             HHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCH---hHHHHH------------HHHHhcCCCHHHH
Q 018743           91 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI---FTLNSM------------ISAYGNSGNIEKM  155 (351)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a  155 (351)
                      +.+.+ +.+..++..+..+|.+.|++++|.+.|+++.+..  +.+.   ..+..+            ...+...|++++|
T Consensus        86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A  162 (450)
T 2y4t_A           86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA  162 (450)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99886 5578899999999999999999999999998763  3344   555555            4448899999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743          156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR  235 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  235 (351)
                      ...++++.... +.+...+..+..++.+.|++++|...++.+.+... .+..++..+...+...|++++|...++++...
T Consensus       163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  240 (450)
T 2y4t_A          163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL  240 (450)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999998765 56788899999999999999999999999887643 37889999999999999999999999999876


Q ss_pred             CCCccHHHHHHH------------HHHHHhcCCHhHHHHHHHHhhhcCCccC----HHhHHHHHHHHHhcCCHHHHHHHH
Q 018743          236 GMKPNSITYCSL------------VSAYSKAGLIMKVDSILRQVENSDVILD----TPFFNCIISAYGQAGDVEKMGELF  299 (351)
Q Consensus       236 ~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~  299 (351)
                      . +.+...+..+            ...+...|++++|...++++.+..+. +    ...+..+..++.+.|++++|+..+
T Consensus       241 ~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  318 (450)
T 2y4t_A          241 D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVC  318 (450)
T ss_dssp             C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             C-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4 4445555544            78899999999999999999886543 3    347888899999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743          300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG  345 (351)
Q Consensus       300 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  345 (351)
                      +++.+.. +.+...|..+..+|...|++++|...++++++..|..+
T Consensus       319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  363 (450)
T 2y4t_A          319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ  363 (450)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred             HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence            9998762 44688999999999999999999999999999887654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.97  E-value=2.3e-26  Score=196.42  Aligned_cols=330  Identities=10%  Similarity=-0.001  Sum_probs=274.5

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD   82 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (351)
                      .+.+.|++++|+.+|+.+.+..+. +..+|..+..++...|++++|+..|+++.+..  +.+..++..+..++...|+++
T Consensus        35 ~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~  111 (450)
T 2y4t_A           35 KLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLD  111 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHH
Confidence            467889999999999999987544 89999999999999999999999999998743  456788999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCH---hHHHHH------------HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743           83 LIEKILAEMSYLGIECSA---VTYNTI------------IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG  147 (351)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  147 (351)
                      +|...|+++.+.. +.+.   ..+..+            ...+...|++++|...|+++.+..  +.+..++..+..++.
T Consensus       112 ~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~  188 (450)
T 2y4t_A          112 EAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFI  188 (450)
T ss_dssp             HHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Confidence            9999999999875 3344   565555            445889999999999999998873  667888999999999


Q ss_pred             cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH------------HHH
Q 018743          148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV------------IET  215 (351)
Q Consensus       148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~  215 (351)
                      +.|++++|.+.++++.... +.+..++..+...+...|++++|...++.+....+. +...+..+            ...
T Consensus       189 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~  266 (450)
T 2y4t_A          189 KEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEE  266 (450)
T ss_dssp             HTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998764 567889999999999999999999999999876433 44555444            788


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743          216 FGKAGHIEKMEEYFKKMKHRGMKPN----SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD  291 (351)
Q Consensus       216 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  291 (351)
                      +...|++++|...|+++.+.. +.+    ...+..+...+.+.|++++|...++++.+..+. +..++..+..+|...|+
T Consensus       267 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~  344 (450)
T 2y4t_A          267 LIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEM  344 (450)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcC
Confidence            999999999999999999863 222    447888999999999999999999999887654 78899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCC-CHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH-HHHhcccC
Q 018743          292 VEKMGELFLTMKERHCVP-DNITFATMIQA------------YNALG-----MTEAAQNLENK-MIAMKENS  344 (351)
Q Consensus       292 ~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~~  344 (351)
                      +++|...|+++.+.  .| +...+..+..+            |...|     +.+++.+.+++ .++..|+.
T Consensus       345 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~  414 (450)
T 2y4t_A          345 YDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN  414 (450)
T ss_dssp             HHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence            99999999999985  44 45566666533            33344     56777888886 56555553

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.6e-26  Score=195.75  Aligned_cols=335  Identities=9%  Similarity=-0.076  Sum_probs=200.6

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD   82 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (351)
                      .+.+.|++++|+..|+++.+.+  |++.+|..+..++.+.|++++|++.++++.+..  +.+..+|..+..++...|+++
T Consensus        15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~   90 (514)
T 2gw1_A           15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFA   90 (514)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHH
Confidence            3556788888888888888764  578888888888888888888888888887642  445667778888888888888


Q ss_pred             HHHHHHHHHHHcCCCC----------------------------------------------------------------
Q 018743           83 LIEKILAEMSYLGIEC----------------------------------------------------------------   98 (351)
Q Consensus        83 ~a~~~~~~~~~~~~~~----------------------------------------------------------------   98 (351)
                      +|...|+++...+...                                                                
T Consensus        91 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
T 2gw1_A           91 DAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI  170 (514)
T ss_dssp             HHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence            8888887776554200                                                                


Q ss_pred             --------------CHhHHHHHHHHHhh---cCChHHHHHHHHHHHh-----cCCC-------CCCHhHHHHHHHHHhcC
Q 018743           99 --------------SAVTYNTIIDGYGK---AKKFEEMESSFSAMVE-----SGGC-------HPDIFTLNSMISAYGNS  149 (351)
Q Consensus        99 --------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~l~~~~~~~  149 (351)
                                    +...+......+..   .|++++|...|+++.+     ....       +.+..++..+...+...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (514)
T 2gw1_A          171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK  250 (514)
T ss_dssp             SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence                          01111222222221   4555555555555544     1000       11223344444445555


Q ss_pred             CCHHHHHHHHHHHHhcCC--------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743          150 GNIEKMEKWYNEFNLMGV--------------------------------KADIQTLNILTKSYGRAGMYDKMRSVMDFM  197 (351)
Q Consensus       150 ~~~~~a~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  197 (351)
                      |++++|...++++.....                                +.+...+..+...+...|++++|...++.+
T Consensus       251 ~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  330 (514)
T 2gw1_A          251 NDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA  330 (514)
T ss_dssp             SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            555555555544443321                                233444555555555666666666666665


Q ss_pred             HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-C-
Q 018743          198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-D-  275 (351)
Q Consensus       198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~-  275 (351)
                      ...... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+.. + 
T Consensus       331 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  408 (514)
T 2gw1_A          331 KELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI  408 (514)
T ss_dssp             HHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred             HHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence            554322 34455556666666666666666666666542 3345566666666666777777777666665433221 1 


Q ss_pred             ---HHhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          276 ---TPFFNCIISAYGQ---AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       276 ---~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                         ...+..+..++..   .|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++++..|..
T Consensus       409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  482 (514)
T 2gw1_A          409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM  482 (514)
T ss_dssp             SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence               2256666667777   677777777777766542 3345566667777777777777777777777766553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.95  E-value=5.5e-24  Score=176.01  Aligned_cols=307  Identities=10%  Similarity=0.007  Sum_probs=196.5

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII  107 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  107 (351)
                      ++..+..+...+...|++++|+..|+++.+..  +.+..++..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   78 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence            34556666666777777777777777766532  3345566666666777777777777777766654 33556666667


Q ss_pred             HHHhhcCChHHHHHHHHHHHhcCCCC---CCHhHHHHH------------HHHHhcCCCHHHHHHHHHHHHhcCCCCCHH
Q 018743          108 DGYGKAKKFEEMESSFSAMVESGGCH---PDIFTLNSM------------ISAYGNSGNIEKMEKWYNEFNLMGVKADIQ  172 (351)
Q Consensus       108 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  172 (351)
                      .++...|++++|...++++.+..  +   .+...+..+            ...+...|++++|.+.++++.+.. +.+..
T Consensus        79 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  155 (359)
T 3ieg_A           79 HLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAE  155 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchH
Confidence            77777777777777777766542  2   233333333            456667777777777777766554 44566


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH-------
Q 018743          173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC-------  245 (351)
Q Consensus       173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------  245 (351)
                      .+..+...+...|++++|...++.+....+ .+...+..+...+...|++++|...+++..+.. +.+...+.       
T Consensus       156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~  233 (359)
T 3ieg_A          156 LRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK  233 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHH
Confidence            666777777777777777777777666533 256666677777777777777777777766653 22333222       


Q ss_pred             -----HHHHHHHhcCCHhHHHHHHHHhhhcCCccCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018743          246 -----SLVSAYSKAGLIMKVDSILRQVENSDVILDT----PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT  316 (351)
Q Consensus       246 -----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  316 (351)
                           .+...+...|++++|...++++.+..+. +.    ..+..+..++...|++++|.+.++++.+. .+.+..++..
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~  311 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKD  311 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHH
Confidence                 2255566777777777777777665433 22    22444566777777777777777777765 2335667777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          317 MIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       317 l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      +...+...|++++|...++++++..|..
T Consensus       312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~  339 (359)
T 3ieg_A          312 RAEAYLIEEMYDEAIQDYEAAQEHNEND  339 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            7777777777777777777777766654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.95  E-value=3.4e-23  Score=171.27  Aligned_cols=310  Identities=9%  Similarity=-0.026  Sum_probs=258.9

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD   82 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (351)
                      .+.+.|++++|+..|+.+.+..+. ++.++..+..++...|++++|+..++++.+..  +.+...+..+...+...|+++
T Consensus        12 ~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~   88 (359)
T 3ieg_A           12 KLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLD   88 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChH
Confidence            356789999999999999988655 78999999999999999999999999998743  446788999999999999999


Q ss_pred             HHHHHHHHHHHcCCC---CCHhHHHHH------------HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743           83 LIEKILAEMSYLGIE---CSAVTYNTI------------IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG  147 (351)
Q Consensus        83 ~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  147 (351)
                      +|...++++.+.. +   .+...+..+            ...+...|++++|.+.++++.+..  +.+...+..+...+.
T Consensus        89 ~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~  165 (359)
T 3ieg_A           89 EAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRELRAECFI  165 (359)
T ss_dssp             HHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHH
Confidence            9999999998875 3   355555555            578899999999999999998874  667888999999999


Q ss_pred             cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH------------HHHHH
Q 018743          148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN------------IVIET  215 (351)
Q Consensus       148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~  215 (351)
                      ..|++++|...++++.... +.+...+..+...+...|++++|...++...+..+. +...+.            .+...
T Consensus       166 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~  243 (359)
T 3ieg_A          166 KEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEE  243 (359)
T ss_dssp             HTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998765 567889999999999999999999999998876433 333333            23667


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743          216 FGKAGHIEKMEEYFKKMKHRGMKPNS----ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD  291 (351)
Q Consensus       216 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  291 (351)
                      +...|++++|...++++.+.. +.+.    ..+..+...+...|++++|...+++..+..+. +..++..+..++...|+
T Consensus       244 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~  321 (359)
T 3ieg_A          244 LIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEM  321 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCC
Confidence            889999999999999998864 2233    23556788999999999999999999987654 78899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743          292 VEKMGELFLTMKERHCVPDNITFATMIQAYNA  323 (351)
Q Consensus       292 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  323 (351)
                      +++|.+.|+++.+.. +-+...+..+..+...
T Consensus       322 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          322 YDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL  352 (359)
T ss_dssp             HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence            999999999999862 2235556666555443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.95  E-value=6e-24  Score=185.49  Aligned_cols=332  Identities=9%  Similarity=-0.012  Sum_probs=257.0

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD   82 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (351)
                      .+.+.|++++|+..|+++.+..+. ++.+|..+..++.+.|++++|++.++++.+..  +.+..++..+..++...|+++
T Consensus        34 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~  110 (537)
T 3fp2_A           34 HFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFT  110 (537)
T ss_dssp             HHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHH
Confidence            356788999999999998887655 78888889999999999999999999888743  456777888888888888888


Q ss_pred             HHHHHHHHH-----------------------------------------------------------------------
Q 018743           83 LIEKILAEM-----------------------------------------------------------------------   91 (351)
Q Consensus        83 ~a~~~~~~~-----------------------------------------------------------------------   91 (351)
                      +|...|+.+                                                                       
T Consensus       111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (537)
T 3fp2_A          111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD  190 (537)
T ss_dssp             HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence            887766422                                                                       


Q ss_pred             --------------------------------------HHcCCCCC-------HhHHHHHHHHHhhcCChHHHHHHHHHH
Q 018743           92 --------------------------------------SYLGIECS-------AVTYNTIIDGYGKAKKFEEMESSFSAM  126 (351)
Q Consensus        92 --------------------------------------~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~  126 (351)
                                                            .+.. +.+       ..++..+...+...|++++|...++++
T Consensus       191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~  269 (537)
T 3fp2_A          191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES  269 (537)
T ss_dssp             SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence                                                  1111 111       123555566777788888999999888


Q ss_pred             HhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 018743          127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV  206 (351)
Q Consensus       127 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  206 (351)
                      .+.   .|+..++..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++.+....+. +.
T Consensus       270 ~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~  344 (537)
T 3fp2_A          270 INL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NV  344 (537)
T ss_dssp             HHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CS
T ss_pred             Hhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CH
Confidence            876   3457778888888889999999999998887765 456778888888999999999999999988876443 56


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-----CHHhHHH
Q 018743          207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-----DTPFFNC  281 (351)
Q Consensus       207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~  281 (351)
                      ..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+..     ....+..
T Consensus       345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  423 (537)
T 3fp2_A          345 YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG  423 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence            678888888999999999999999988874 5567788888899999999999999998877543221     1222444


Q ss_pred             HHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743          282 IISAYGQA----------GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG  345 (351)
Q Consensus       282 l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  345 (351)
                      ...++...          |++++|...|+++.+.. +.+...+..+...|...|++++|.+.++++++..|..+
T Consensus       424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  496 (537)
T 3fp2_A          424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD  496 (537)
T ss_dssp             HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred             HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence            55677777          99999999999988763 44677889999999999999999999999999887654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.9e-23  Score=178.69  Aligned_cols=310  Identities=10%  Similarity=-0.041  Sum_probs=263.6

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII  107 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  107 (351)
                      ....+......+.+.|++++|+..|+++.+.   .|+..+|..+..++...|++++|...++++.+.+ |.+..++..+.
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~   80 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRA   80 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence            3567788899999999999999999999984   4799999999999999999999999999999886 56788999999


Q ss_pred             HHHhhcCChHHHHHHHHHHHhcCCCC------------------------------------------------------
Q 018743          108 DGYGKAKKFEEMESSFSAMVESGGCH------------------------------------------------------  133 (351)
Q Consensus       108 ~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------------------------------  133 (351)
                      .++...|++++|...|+++....+..                                                      
T Consensus        81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (514)
T 2gw1_A           81 SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS  160 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence            99999999999999999987663110                                                      


Q ss_pred             -----------------------CCHhHHHHHHHHHhc---CCCHHHHHHHHHHHHh-----cCC--------CCCHHHH
Q 018743          134 -----------------------PDIFTLNSMISAYGN---SGNIEKMEKWYNEFNL-----MGV--------KADIQTL  174 (351)
Q Consensus       134 -----------------------~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~  174 (351)
                                             .+...+......+..   .|++++|..+++++..     ...        +.+...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (514)
T 2gw1_A          161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL  240 (514)
T ss_dssp             HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence                                   012223333333443   8999999999999887     311        2235577


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 018743          175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA  254 (351)
Q Consensus       175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  254 (351)
                      ..+...+...|++++|...++.+......  ...+..+...+...|++++|...++++.... +.+...+..+...+...
T Consensus       241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  317 (514)
T 2gw1_A          241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL  317 (514)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence            88899999999999999999999887544  8888999999999999999999999998874 55778899999999999


Q ss_pred             CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 018743          255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE  334 (351)
Q Consensus       255 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  334 (351)
                      |++++|...++++.+..+. +...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...+
T Consensus       318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~  395 (514)
T 2gw1_A          318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQY  395 (514)
T ss_dssp             TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999999987765 6788999999999999999999999999876 2446778899999999999999999999


Q ss_pred             HHHHHhcccCCC
Q 018743          335 NKMIAMKENSGK  346 (351)
Q Consensus       335 ~~~~~~~~~~~~  346 (351)
                      +++++..|..+.
T Consensus       396 ~~a~~~~~~~~~  407 (514)
T 2gw1_A          396 DLAIELENKLDG  407 (514)
T ss_dssp             HHHHHHHHTSSS
T ss_pred             HHHHHhhhccch
Confidence            999998887654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.93  E-value=4.9e-23  Score=168.35  Aligned_cols=294  Identities=10%  Similarity=-0.015  Sum_probs=244.8

Q ss_pred             CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH
Q 018743           26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT  105 (351)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  105 (351)
                      +.++..+..++..+...|++++|+++|+++.+..  +.+...+..++..+...|++++|..+++++.+.. +.+..++..
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~   95 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA   95 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence            4466778888899999999999999999998753  3445567777788899999999999999998875 557888999


Q ss_pred             HHHHHhhcC-ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018743          106 IIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA  184 (351)
Q Consensus       106 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  184 (351)
                      +...+...| ++++|.+.|+++.+..  +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence            999999999 9999999999998763  5567789999999999999999999999998765 44566777799999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCccHHHHHHHHHHHHhcCC
Q 018743          185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG--------MKPNSITYCSLVSAYSKAGL  256 (351)
Q Consensus       185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~  256 (351)
                      |++++|...++...+..+. +...+..+...+...|++++|...++++.+..        .+....++..+...+...|+
T Consensus       173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  251 (330)
T 3hym_B          173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK  251 (330)
T ss_dssp             TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence            9999999999999887543 67888999999999999999999999987642        13345788899999999999


Q ss_pred             HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHcCCHH
Q 018743          257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY-NALGMTE  328 (351)
Q Consensus       257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~  328 (351)
                      +++|...++++.+..+. +...+..+..++...|++++|.+.|+++.+.. +.+...+..+..++ ...|+.+
T Consensus       252 ~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          252 YAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence            99999999999887655 77889999999999999999999999988752 33567777787777 4556543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.93  E-value=2.1e-23  Score=173.24  Aligned_cols=295  Identities=9%  Similarity=-0.040  Sum_probs=235.2

Q ss_pred             HhccCChHHHHH-HHHHhhccCCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC
Q 018743           39 YGQSGLLDEAFS-TINDMKSVSDCKP--DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK  115 (351)
Q Consensus        39 ~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  115 (351)
                      +.-.|++++|++ .+++........|  +...+..+...+...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence            344578999998 8887665432222  34567788889999999999999999999886 5688899999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHH---------------HHHH
Q 018743          116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI---------------LTKS  180 (351)
Q Consensus       116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~  180 (351)
                      +++|...|+++.+..  +.+..++..+...+...|++++|.+.++++.... +.+...+..               .+..
T Consensus       114 ~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 1fch_A          114 ELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGS  190 (368)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHH
T ss_pred             HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence            999999999998874  6678889999999999999999999999998754 222222221               2333


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhH
Q 018743          181 YGRAGMYDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK  259 (351)
Q Consensus       181 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  259 (351)
                      +...|++++|...++.+.+..+.. +..++..+...+...|++++|...++++.... +.+..++..+...+...|++++
T Consensus       191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence            448899999999999998864432 57889999999999999999999999999874 5568899999999999999999


Q ss_pred             HHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHHHcCCHHH
Q 018743          260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP----------DNITFATMIQAYNALGMTEA  329 (351)
Q Consensus       260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~  329 (351)
                      |...++++.+..+. +...+..+..++.+.|++++|...|+++.+.....          ...+|..+..+|...|++++
T Consensus       270 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          270 AVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence            99999999887654 78889999999999999999999999988642111          16789999999999999999


Q ss_pred             HHHHHHHHHH
Q 018743          330 AQNLENKMIA  339 (351)
Q Consensus       330 A~~~~~~~~~  339 (351)
                      |..++++.++
T Consensus       349 A~~~~~~~l~  358 (368)
T 1fch_A          349 YGAADARDLS  358 (368)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHhHHHHHH
Confidence            9998876554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.93  E-value=2.2e-22  Score=164.51  Aligned_cols=277  Identities=9%  Similarity=-0.003  Sum_probs=239.7

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHH
Q 018743           62 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS  141 (351)
Q Consensus        62 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  141 (351)
                      +.+...+..+...+...|++++|..+++++.+.. +.+...+..++.++...|++++|...++++.+..  +.+...+..
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~   95 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFA   95 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHH
Confidence            4455567788888899999999999999998876 5577788888899999999999999999998874  567778999


Q ss_pred             HHHHHhcCC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 018743          142 MISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG  220 (351)
Q Consensus       142 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  220 (351)
                      +...+...| ++++|.+.+++..... +.+...+..+...+...|++++|...++.+.+.... +...+..+...+...|
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence            999999999 9999999999998765 456778999999999999999999999999887544 4566777899999999


Q ss_pred             CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC--------ccCHHhHHHHHHHHHhcCCH
Q 018743          221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV--------ILDTPFFNCIISAYGQAGDV  292 (351)
Q Consensus       221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~  292 (351)
                      ++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...        .....++..+..++...|++
T Consensus       174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            9999999999999875 56788999999999999999999999999876421        23467899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743          293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG  345 (351)
Q Consensus       293 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  345 (351)
                      ++|...++++.+.. +.+...+..+...+...|++++|.+.++++++..|...
T Consensus       253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (330)
T 3hym_B          253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT  304 (330)
T ss_dssp             HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred             HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence            99999999999863 44678899999999999999999999999998887654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=2.4e-21  Score=169.00  Aligned_cols=311  Identities=9%  Similarity=0.010  Sum_probs=253.6

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII  107 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  107 (351)
                      ....|..+...+.+.|++++|++.|+++.+..  +.+..+|..+..++...|++++|...++++.+.+ |.+..++..+.
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la  100 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence            45778889999999999999999999998753  5578889999999999999999999999999886 56888999999


Q ss_pred             HHHhhcCChHHHHHHHHHHHhcCCCC------------------------------------CCHh--------------
Q 018743          108 DGYGKAKKFEEMESSFSAMVESGGCH------------------------------------PDIF--------------  137 (351)
Q Consensus       108 ~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------------~~~~--------------  137 (351)
                      .++...|++++|...|+.+ ...+..                                    |+..              
T Consensus       101 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (537)
T 3fp2_A          101 SANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE  179 (537)
T ss_dssp             HHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence            9999999999999999644 221000                                    1000              


Q ss_pred             ----------------HHHHHHHHHhc--------CCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCC
Q 018743          138 ----------------TLNSMISAYGN--------SGNIEKMEKWYNEFNLMGVKADI-------QTLNILTKSYGRAGM  186 (351)
Q Consensus       138 ----------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~  186 (351)
                                      ....+...+..        .|++++|..+++++.+.. +.+.       .++..+...+...|+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~  258 (537)
T 3fp2_A          180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNN  258 (537)
T ss_dssp             HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhccc
Confidence                            11112222222        147889999999988754 2332       346677788889999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 018743          187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ  266 (351)
Q Consensus       187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  266 (351)
                      +++|...++.+....  |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++
T Consensus       259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  335 (537)
T 3fp2_A          259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK  335 (537)
T ss_dssp             HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            999999999998864  457888899999999999999999999999875 55788999999999999999999999999


Q ss_pred             hhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       267 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      +.+..+. +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++++..|....
T Consensus       336 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  413 (537)
T 3fp2_A          336 AQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK  413 (537)
T ss_dssp             HHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence            9987665 67889999999999999999999999999863 446778999999999999999999999999999887665


Q ss_pred             Cc
Q 018743          347 KL  348 (351)
Q Consensus       347 ~~  348 (351)
                      ..
T Consensus       414 ~~  415 (537)
T 3fp2_A          414 IH  415 (537)
T ss_dssp             CS
T ss_pred             hH
Confidence            43

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.92  E-value=2.3e-22  Score=166.96  Aligned_cols=293  Identities=8%  Similarity=-0.042  Sum_probs=233.9

Q ss_pred             cccCCCHHHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcC
Q 018743            4 LGKCKQPEQASL-LFEVMLSDGLK---PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH   79 (351)
Q Consensus         4 ~~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (351)
                      +...|++++|.. .|++..+....   .+...+..+...+.+.|++++|+..|+++.+..  +.+..++..+..++...|
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCc
Confidence            334577788887 77765544222   135668889999999999999999999999743  557788999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHH---------------HHH
Q 018743           80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS---------------MIS  144 (351)
Q Consensus        80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~  144 (351)
                      ++++|...++++.+.. +.+..++..+..++...|++++|...++++.+..  +.+...+..               .+.
T Consensus       113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (368)
T 1fch_A          113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILG  189 (368)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTH
T ss_pred             CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence            9999999999999886 5688899999999999999999999999998864  333333321               133


Q ss_pred             HHhcCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 018743          145 AYGNSGNIEKMEKWYNEFNLMGVKA-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE  223 (351)
Q Consensus       145 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  223 (351)
                      .+...|++++|...++++....... +..++..+...+...|++++|...++++....+ .+...+..+...+...|+++
T Consensus       190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~  268 (368)
T 1fch_A          190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSE  268 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHH
Confidence            3448899999999999998765221 578899999999999999999999999888643 36788999999999999999


Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc----------CHHhHHHHHHHHHhcCCHH
Q 018743          224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL----------DTPFFNCIISAYGQAGDVE  293 (351)
Q Consensus       224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~  293 (351)
                      +|...++++.+.. +.+...+..+...+...|++++|...++++.+..+..          ...+|..+..++...|+++
T Consensus       269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  347 (368)
T 1fch_A          269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  347 (368)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence            9999999999874 5578899999999999999999999999988654331          1678999999999999999


Q ss_pred             HHHHHHHHHH
Q 018743          294 KMGELFLTMK  303 (351)
Q Consensus       294 ~a~~~~~~~~  303 (351)
                      +|..++++..
T Consensus       348 ~A~~~~~~~l  357 (368)
T 1fch_A          348 AYGAADARDL  357 (368)
T ss_dssp             GHHHHHTTCH
T ss_pred             hHHHhHHHHH
Confidence            9999887543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.91  E-value=1.3e-22  Score=168.34  Aligned_cols=266  Identities=8%  Similarity=-0.081  Sum_probs=221.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 018743           64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI  143 (351)
Q Consensus        64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  143 (351)
                      +...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...|+++.+..  +.+..++..+.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~  140 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA  140 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence            34558888889999999999999999999886 5688899999999999999999999999998874  56788899999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHhHHH
Q 018743          144 SAYGNSGNIEKMEKWYNEFNLMGVKAD-----------IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNI  211 (351)
Q Consensus       144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~  211 (351)
                      .++...|++++|...++++.+..  |+           ...+..+...+...|++++|...++++....+. ++...+..
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  218 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG  218 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence            99999999999999999988743  22           223344578899999999999999999887433 26888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743          212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD  291 (351)
Q Consensus       212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  291 (351)
                      +...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +..++..+..+|...|+
T Consensus       219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~  296 (365)
T 4eqf_A          219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGA  296 (365)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence            9999999999999999999999874 567889999999999999999999999999987655 68899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743          292 VEKMGELFLTMKERHCV-----------PDNITFATMIQAYNALGMTEAAQNLENK  336 (351)
Q Consensus       292 ~~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~  336 (351)
                      +++|...|+++.+....           .+...|..+..++...|+.+.+..+.++
T Consensus       297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999999998864211           1367899999999999999998887765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.90  E-value=4.1e-21  Score=156.71  Aligned_cols=282  Identities=7%  Similarity=-0.033  Sum_probs=178.3

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743           31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY  110 (351)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (351)
                      .+..+...+...|++++|+.+|+++.+..  +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~   99 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH   99 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence            34444555555555555555555554421  2344445555555555555555555555555443 33444555555555


Q ss_pred             hhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHH-HH-HHHhcCCHH
Q 018743          111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL-TK-SYGRAGMYD  188 (351)
Q Consensus       111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~  188 (351)
                      ...|++++|.+.++++.+..  +.+...+..+...                      .|+......+ .. .+...|+++
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~  155 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR  155 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence            55555555555555554432  1111112111000                      0000111111 22 366778888


Q ss_pred             HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743          189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE  268 (351)
Q Consensus       189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  268 (351)
                      +|...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus       156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  233 (327)
T 3cv0_A          156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL  233 (327)
T ss_dssp             HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888888888776443 67778888888888889999998888888764 5567788888888989999999999999888


Q ss_pred             hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743          269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-----------DNITFATMIQAYNALGMTEAAQNLENKM  337 (351)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~  337 (351)
                      +..+. +...+..+..++...|++++|.+.++++.+.....           +...|..+..++...|++++|..++++.
T Consensus       234 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          234 DINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            77654 67788888899999999999999999887652221           4678888889999999999999988876


Q ss_pred             HHhcc
Q 018743          338 IAMKE  342 (351)
Q Consensus       338 ~~~~~  342 (351)
                      ++..+
T Consensus       313 l~~~~  317 (327)
T 3cv0_A          313 VEPFA  317 (327)
T ss_dssp             SHHHH
T ss_pred             HHhcc
Confidence            55443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.90  E-value=3.2e-21  Score=159.93  Aligned_cols=266  Identities=9%  Similarity=-0.028  Sum_probs=222.4

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII  107 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  107 (351)
                      +...+..+...+.+.|++++|+..|+++.+..  +.+..+|..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  140 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA  140 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence            44568889999999999999999999998753  5578889999999999999999999999999886 55788999999


Q ss_pred             HHHhhcCChHHHHHHHHHHHhcCCCCCCHhH----------HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC--CHHHHH
Q 018743          108 DGYGKAKKFEEMESSFSAMVESGGCHPDIFT----------LNSMISAYGNSGNIEKMEKWYNEFNLMGVKA--DIQTLN  175 (351)
Q Consensus       108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~  175 (351)
                      .+|...|++++|...++++.+..  +.+...          +..+...+...|++++|..+++++.... +.  +..++.
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~  217 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQT  217 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHH
Confidence            99999999999999999998763  222222          3345788999999999999999998865 33  688999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 018743          176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG  255 (351)
Q Consensus       176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  255 (351)
                      .+...+...|++++|...++++.+..+. +..+|..+..++...|++++|...++++.+.. +.+..++..+...|...|
T Consensus       218 ~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  295 (365)
T 4eqf_A          218 GLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG  295 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence            9999999999999999999999887443 68899999999999999999999999999874 556889999999999999


Q ss_pred             CHhHHHHHHHHhhhcCCc-----------cCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743          256 LIMKVDSILRQVENSDVI-----------LDTPFFNCIISAYGQAGDVEKMGELFLT  301 (351)
Q Consensus       256 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~  301 (351)
                      ++++|...++++.+..+.           .+..+|..+..++...|+.+.+.++..+
T Consensus       296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999999999998764322           1357899999999999999998887765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.89  E-value=6.1e-21  Score=155.70  Aligned_cols=269  Identities=12%  Similarity=0.036  Sum_probs=172.5

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      +...|++++|..+|+++.+..+. +..++..+..++...|++++|.+.++++.+..  +.+..++..+...+...|++++
T Consensus        31 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~  107 (327)
T 3cv0_A           31 MLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANA  107 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHHcCCHHH
Confidence            56789999999999999988655 88999999999999999999999999998743  4567889999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH--HHhcCCCHHHHHHHHHH
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS--AYGNSGNIEKMEKWYNE  161 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~  161 (351)
                      |...++++.+.. +.+...+..+...                       .|+......+..  .+...|++++|.+.+++
T Consensus       108 A~~~~~~~~~~~-~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  163 (327)
T 3cv0_A          108 ALASLRAWLLSQ-PQYEQLGSVNLQA-----------------------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHA  163 (327)
T ss_dssp             HHHHHHHHHHTS-TTTTTC-------------------------------------------CCTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CccHHHHHHHhHH-----------------------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence            999999998875 3344444433100                       000011111111  13344455555555555


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 018743          162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS  241 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  241 (351)
                      +.+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+.
T Consensus       164 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~  240 (327)
T 3cv0_A          164 ALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYV  240 (327)
T ss_dssp             HHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH
Confidence            44432 23444555555555555555555555555544422 245556666666666666666666666666553 3345


Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-----------CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743          242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-----------DTPFFNCIISAYGQAGDVEKMGELFLTM  302 (351)
Q Consensus       242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~  302 (351)
                      ..+..+...+...|++++|...++++.+..+..           +...+..+..++...|++++|..++++.
T Consensus       241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            666666666777777777777776665543321           3556777777777777777777776643

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.88  E-value=5.9e-20  Score=146.70  Aligned_cols=277  Identities=8%  Similarity=0.032  Sum_probs=210.1

Q ss_pred             HHHHhccCChHHHHHHHHHhhccCCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhc
Q 018743           36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDV--YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA  113 (351)
Q Consensus        36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  113 (351)
                      ++-....|+++.|+..++.....   .|+.  .....+.+++...|+++.|...++.   . -+|+..++..+...+...
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~   78 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASH   78 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCC
Confidence            44566789999999998877642   4543  3556677889999999999876654   2 366788888888999999


Q ss_pred             CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018743          114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV  193 (351)
Q Consensus       114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  193 (351)
                      ++.++|++.++++....-.+.+...+..+...+...|++++|++.+++      +.+...+..++..+.+.|++++|.+.
T Consensus        79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~  152 (291)
T 3mkr_A           79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE  152 (291)
T ss_dssp             TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999876531244566677778889999999999998887      56778888899999999999999999


Q ss_pred             HHHHHHcCCCCCHHhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743          194 MDFMQKRFFFPTVVTY---NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS  270 (351)
Q Consensus       194 ~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  270 (351)
                      ++.+.+..  |+....   ...+..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++.+.
T Consensus       153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  229 (291)
T 3mkr_A          153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK  229 (291)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99988774  332211   122344445688999999999998873 678888999999999999999999999998888


Q ss_pred             CCccCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 018743          271 DVILDTPFFNCIISAYGQAGDVEK-MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE  334 (351)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  334 (351)
                      .+. ++.++..++..+...|+.++ +.++++++.+.  .|+...   +.....+.+.++++..-|
T Consensus       230 ~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          230 DSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQY  288 (291)
T ss_dssp             CTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHHc
Confidence            766 78888889989999999876 56888888875  444332   223345555566555433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.88  E-value=2.4e-19  Score=143.22  Aligned_cols=253  Identities=11%  Similarity=0.027  Sum_probs=165.9

Q ss_pred             ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHH
Q 018743            5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI   84 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   84 (351)
                      ...|++++|+..++......+.+.......+.++|...|+++.|+..++..     .+|+..++..+...+...++.++|
T Consensus        10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~~~~A   84 (291)
T 3mkr_A           10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSRRDAI   84 (291)
T ss_dssp             HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCcHHHH
Confidence            345777777777766554332222345555667777777777777655431     255666777777777777777777


Q ss_pred             HHHHHHHHHcCC-CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743           85 EKILAEMSYLGI-ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN  163 (351)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  163 (351)
                      .+.++++...+. |.+...+..+...+...|++++|++.+++       +.+...+..++..+.+.|++++|.+.++++.
T Consensus        85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  157 (291)
T 3mkr_A           85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQ  157 (291)
T ss_dssp             HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            777777766553 33455566666777777777777777765       3455667777777777777777777777776


Q ss_pred             hcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 018743          164 LMGVKADIQTL---NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN  240 (351)
Q Consensus       164 ~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  240 (351)
                      +..  |+....   ..++..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...+++..+.. +-+
T Consensus       158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~  233 (291)
T 3mkr_A          158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH  233 (291)
T ss_dssp             HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence            653  332211   122333444577777777777777663 3467777777777777777777777777777664 446


Q ss_pred             HHHHHHHHHHHHhcCCHhH-HHHHHHHhhhcCCc
Q 018743          241 SITYCSLVSAYSKAGLIMK-VDSILRQVENSDVI  273 (351)
Q Consensus       241 ~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~  273 (351)
                      ..++..++..+...|+.++ +..+++++.+..+.
T Consensus       234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence            6677777777777777755 45677777766543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.88  E-value=2.6e-17  Score=141.82  Aligned_cols=307  Identities=10%  Similarity=0.001  Sum_probs=178.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHh----c
Q 018743            7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ----SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK----F   78 (351)
Q Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~   78 (351)
                      .+++++|...|++..+.|   ++.++..|...|..    .+++++|+..|++..+ .   -+...+..+...+..    .
T Consensus        92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~  164 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE-Q---GRDSGQQSMGDAYFEGDGVT  164 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSC
T ss_pred             CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCC
Confidence            344444444444444332   33344444444444    3444444444444443 1   123334444444433    3


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh----cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc----CC
Q 018743           79 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN----SG  150 (351)
Q Consensus        79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~  150 (351)
                      +++++|..+|++..+.|   +...+..+...|..    .+++++|.+.|++..+.+    +..++..+...|..    .+
T Consensus       165 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~  237 (490)
T 2xm6_A          165 RDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQ  237 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCC
T ss_pred             CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCC
Confidence            44555555555444432   34444444444444    455555555555554431    33344444444443    45


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----CC
Q 018743          151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GH  221 (351)
Q Consensus       151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~  221 (351)
                      ++++|.++|++..+.+   +...+..+...+..    .+++++|...|+...+.+   +...+..+...+...     ++
T Consensus       238 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~  311 (490)
T 2xm6_A          238 DYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN  311 (490)
T ss_dssp             CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence            5566666665555432   33444455555555    566667777666665542   344555566666655     67


Q ss_pred             HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh----cCCHHH
Q 018743          222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSDVILDTPFFNCIISAYGQ----AGDVEK  294 (351)
Q Consensus       222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~  294 (351)
                      +++|...+++..+.+   +...+..+...|...|   +.++|...|++..+.+   ++..+..+...|..    .+++++
T Consensus       312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~  385 (490)
T 2xm6_A          312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQ  385 (490)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence            777777777777654   3345666666666655   6777888888777653   56777788888887    788888


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcc
Q 018743          295 MGELFLTMKERHCVPDNITFATMIQAYNA----LGMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       295 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  342 (351)
                      |.+.|++..+.+   ++..+..+...|..    .++.++|...|+++.+.++
T Consensus       386 A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          386 AAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            888888888764   56677788888887    7889999999998888874

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.87  E-value=7.8e-17  Score=138.81  Aligned_cols=306  Identities=15%  Similarity=0.063  Sum_probs=258.4

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHh----c
Q 018743            7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ----SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK----F   78 (351)
Q Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~   78 (351)
                      .+++++|...|+...+.|   ++.++..|...|..    .+++++|++.|++..+ .   .+...+..+...+..    .
T Consensus        56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~  128 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-K---GLPQAQQNLGVMYHEGNGVK  128 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSC
T ss_pred             CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCC
Confidence            789999999999998863   67888889999988    8999999999999987 2   356677778888887    7


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh----cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc----CC
Q 018743           79 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN----SG  150 (351)
Q Consensus        79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~  150 (351)
                      +++++|..+|++..+.|   +...+..|...|..    .+++++|.+.|++..+.+    +...+..+...|..    .+
T Consensus       129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~  201 (490)
T 2xm6_A          129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWSCNQLGYMYSRGLGVER  201 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCC
T ss_pred             CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCCCc
Confidence            89999999999998876   66778888888887    789999999999998753    66778888888887    89


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCH
Q 018743          151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK----AGHI  222 (351)
Q Consensus       151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~  222 (351)
                      +.++|.++|++..+.+   +...+..+...|..    .+++++|...|+...+.+   +...+..+...+..    .+++
T Consensus       202 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~  275 (490)
T 2xm6_A          202 NDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEP  275 (490)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCH
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCH
Confidence            9999999999998765   56677778888876    789999999999988763   45666677777777    8999


Q ss_pred             HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-----CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC---CHHH
Q 018743          223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA-----GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG---DVEK  294 (351)
Q Consensus       223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~  294 (351)
                      ++|...|++..+.|   +...+..+...+...     +++++|...+++..+.+   +...+..+...|...|   ++++
T Consensus       276 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~  349 (490)
T 2xm6_A          276 LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKK  349 (490)
T ss_dssp             HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHH
Confidence            99999999998765   456777788888877     89999999999998875   4567778888888766   8899


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhc
Q 018743          295 MGELFLTMKERHCVPDNITFATMIQAYNA----LGMTEAAQNLENKMIAMK  341 (351)
Q Consensus       295 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  341 (351)
                      |++.|++..+.|   ++..+..+...|..    .+++++|..++++..+.+
T Consensus       350 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          350 AVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            999999999864   67888899999998    899999999999998764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.87  E-value=6.9e-19  Score=151.05  Aligned_cols=338  Identities=9%  Similarity=-0.091  Sum_probs=232.1

Q ss_pred             cccCCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccC----C-C-CccHHHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSD--------GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS----D-C-KPDVYTYS   69 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~-~~~~~~~~   69 (351)
                      +...|++++|++.|++..+.        .-+....+|+.+..+|...|++++|...+++..+..    + . .....++.
T Consensus        61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~  140 (472)
T 4g1t_A           61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC  140 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence            45689999999999987542        112256789999999999999999999998876431    0 1 12345666


Q ss_pred             HHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH---hhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 018743           70 ILIKSCTK--FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS  144 (351)
Q Consensus        70 ~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  144 (351)
                      ....++..  .+++++|...|++..+.. |-++..+..+..++   ...++.++|++.+++.++..  +.+..++..+..
T Consensus       141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~  217 (472)
T 4g1t_A          141 EEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLAL  217 (472)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHH
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHHH
Confidence            66555554  457999999999998875 44666666665553   44677889999999988874  556666666655


Q ss_pred             HHhc----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-
Q 018743          145 AYGN----SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-  219 (351)
Q Consensus       145 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  219 (351)
                      .+..    .+++++|.+++++..... +.+..++..+...+...|++++|...+++..+..+. +..++..+..+|... 
T Consensus       218 ~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~  295 (472)
T 4g1t_A          218 KLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKV  295 (472)
T ss_dssp             HHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHH
Confidence            5443    467889999999988765 567788899999999999999999999999887543 566666666555321 


Q ss_pred             ------------------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHH--hH
Q 018743          220 ------------------GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP--FF  279 (351)
Q Consensus       220 ------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~  279 (351)
                                        +..+.|...+++..+.. +.+..++..+...+...|++++|...|++..+..+.+...  .+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~  374 (472)
T 4g1t_A          296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH  374 (472)
T ss_dssp             HHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence                              23567888888887764 4556778889999999999999999999998775543321  22


Q ss_pred             HHHHH-HHHhcCCHHHHHHHHHHHHhcC-----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 018743          280 NCIIS-AYGQAGDVEKMGELFLTMKERH-----------------------CVPDNITFATMIQAYNALGMTEAAQNLEN  335 (351)
Q Consensus       280 ~~l~~-~~~~~g~~~~a~~~~~~~~~~~-----------------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  335 (351)
                      ..+.. .....|++++|+..|++..+..                       -+.++.+|..+..+|...|++++|++.|+
T Consensus       375 ~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~  454 (472)
T 4g1t_A          375 LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE  454 (472)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            33332 3456789999999988876532                       13456789999999999999999999999


Q ss_pred             HHHHhcccCCCC
Q 018743          336 KMIAMKENSGKK  347 (351)
Q Consensus       336 ~~~~~~~~~~~~  347 (351)
                      ++++.++..+..
T Consensus       455 kALe~~~~~p~a  466 (472)
T 4g1t_A          455 RGLESGSLIPSA  466 (472)
T ss_dssp             ------------
T ss_pred             HHHhcCCCCCcH
Confidence            999988876543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.86  E-value=5.1e-21  Score=156.41  Aligned_cols=284  Identities=13%  Similarity=0.127  Sum_probs=135.8

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      +-+.|++++|.+.++++.      ++.+|..++.++.+.|++++|++.|.+       .+|..+|..++.++...|++++
T Consensus        13 l~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~Ee   79 (449)
T 1b89_A           13 IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEE   79 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHH
Confidence            346788999999999883      346999999999999999999999965       2566789999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN  163 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  163 (351)
                      |..+++...+.  .+++.+.+.++.+|.+.|+++++.++++        .|+..+|..+...|...|.+++|..+|..+ 
T Consensus        80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-  148 (449)
T 1b89_A           80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-  148 (449)
T ss_dssp             -------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT-
T ss_pred             HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence            99988877764  4567889999999999999999888774        356679999999999999999999999976 


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 018743          164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT  243 (351)
Q Consensus       164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  243 (351)
                              ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......     +...+.-
T Consensus       149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~  209 (449)
T 1b89_A          149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADE  209 (449)
T ss_dssp             --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHH
T ss_pred             --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhh
Confidence                    36899999999999999999999988      2789999999999999999999665543     2233344


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCC------CHHHHH
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA--GDVEKMGELFLTMKERHCVP------DNITFA  315 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~  315 (351)
                      ...++..|.+.|++++|..+++...... .-....|+.+.-+|++-  ++..+.++.|..  ..+++|      +...|.
T Consensus       210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~  286 (449)
T 1b89_A          210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWA  286 (449)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence            5679999999999999999999998776 33678888888888765  334444444432  122333      466899


Q ss_pred             HHHHHHHHcCCHHHHHHH
Q 018743          316 TMIQAYNALGMTEAAQNL  333 (351)
Q Consensus       316 ~l~~~~~~~g~~~~A~~~  333 (351)
                      -+.-.|.+.++++.|...
T Consensus       287 e~~~ly~~~~e~d~A~~t  304 (449)
T 1b89_A          287 ELVFLYDKYEEYDNAIIT  304 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhhchHHHHHHH
Confidence            999999999999988764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.85  E-value=6.4e-17  Score=140.74  Aligned_cols=329  Identities=8%  Similarity=0.003  Sum_probs=192.9

Q ss_pred             ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHH-HhcCCHHH
Q 018743            5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC-TKFHRFDL   83 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~   83 (351)
                      .+.|++++|..+|+++.+..+. +...|..++..+.+.|++++|..+|++....   .|+...|...+... ...|+.+.
T Consensus        23 ~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~~~~~~~~~~~~~   98 (530)
T 2ooe_A           23 AQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYLSYVRETKGKLPS   98 (530)
T ss_dssp             HHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHHTTTSTT
T ss_pred             HHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHccchhh
Confidence            4578999999999999987554 8889999999999999999999999999874   46777776666432 23455444


Q ss_pred             HHH----HHHHHHHc-CCC-CCHhHHHHHHHHHhh---------cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH--
Q 018743           84 IEK----ILAEMSYL-GIE-CSAVTYNTIIDGYGK---------AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY--  146 (351)
Q Consensus        84 a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--  146 (351)
                      |.+    +|+..... |.. ++...|...+....+         .|+++.|..+|++.++.. ..+....|.......  
T Consensus        99 a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~~~~~~~~~~~~~~e~~  177 (530)
T 2ooe_A           99 YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-MINIEQLWRDYNKYEEG  177 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-CTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHHHh
Confidence            433    55554432 322 234555555554433         456666666666665421 111111221111100  


Q ss_pred             -----------hcCCCH------------------------------------------------------------HHH
Q 018743          147 -----------GNSGNI------------------------------------------------------------EKM  155 (351)
Q Consensus       147 -----------~~~~~~------------------------------------------------------------~~a  155 (351)
                                 .+.+++                                                            ..+
T Consensus       178 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a  257 (530)
T 2ooe_A          178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV  257 (530)
T ss_dssp             HCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred             hchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence                       000111                                                            133


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 018743          156 EKWYNEFNLMGVKADIQTLNILTKSYGR-------AGMYD-------KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH  221 (351)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  221 (351)
                      ..+|++..... +.+...|..++..+.+       .|+++       +|..++++..+.-.+.+...|..++..+.+.|+
T Consensus       258 ~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~  336 (530)
T 2ooe_A          258 MFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK  336 (530)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence            33444443321 3344455555555543       56655       677777776652122356667777777777777


Q ss_pred             HHHHHHHHHHHHHcCCCcc-H-HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH-HHhcCCHHHHHHH
Q 018743          222 IEKMEEYFKKMKHRGMKPN-S-ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA-YGQAGDVEKMGEL  298 (351)
Q Consensus       222 ~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~  298 (351)
                      +++|..+|+++.+.  .|+ . ..|..++..+.+.|++++|..+|++..+..+. +...+...+.. +...|+.++|..+
T Consensus       337 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~  413 (530)
T 2ooe_A          337 YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKI  413 (530)
T ss_dssp             HHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHH
Confidence            77777777777764  332 2 46666666666677777777777776655322 22333222222 2346777777777


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       299 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      |++..+. .+.+...|..++..+.+.|+.++|..+|++++...+.
T Consensus       414 ~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~  457 (530)
T 2ooe_A          414 FELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  457 (530)
T ss_dssp             HHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence            7776654 2334566667777777777777777777777766543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.2e-17  Score=131.40  Aligned_cols=227  Identities=11%  Similarity=-0.029  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCC----HhHHH
Q 018743           66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG-CHPD----IFTLN  140 (351)
Q Consensus        66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~  140 (351)
                      ..+..+...+...|++++|...++++.+..  .+..++..+..++...|++++|...+++..+... ..++    ..++.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            445555555666666666666666665554  4555555566666666666666666665544310 0001    24444


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 018743          141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG  220 (351)
Q Consensus       141 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  220 (351)
                      .+...+...|++++|...+++....  .|+.       ..                                   +...|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~-----------------------------------~~~~~  119 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DI-----------------------------------LTKLR  119 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HH-----------------------------------HHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HH-----------------------------------HHHHh
Confidence            5555555555555555555555442  2221       12                                   33334


Q ss_pred             CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743          221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL  300 (351)
Q Consensus       221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  300 (351)
                      ++++|...++++.... +.+...+..+...+...|++++|...++++.+..+. +..++..+..++...|++++|...++
T Consensus       120 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~  197 (258)
T 3uq3_A          120 NAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCN  197 (258)
T ss_dssp             HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            4455555555544432 223344455555555555555555555555544333 44455555555555555555555555


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743          301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK  341 (351)
Q Consensus       301 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  341 (351)
                      ++.+.. +.+...+..+..++...|++++|...++++++..
T Consensus       198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            555432 2234455555555555555555555555555554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.9e-17  Score=130.17  Aligned_cols=227  Identities=13%  Similarity=0.045  Sum_probs=170.3

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----Hh
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE--CS----AV  101 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~  101 (351)
                      ....+..+...+...|++++|+..|++..+..   .+..++..+..++...|++++|...+++..+....  ++    ..
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            46788899999999999999999999999843   67788999999999999999999999998875311  11    57


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743          102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY  181 (351)
Q Consensus       102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  181 (351)
                      ++..+..++...|++++|...|++..+.   .|+.       ..+...|++++|...++.+.... +.+...+..+...+
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~  149 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEY  149 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHH
Confidence            8899999999999999999999999886   4553       34556678899999998887743 33455666677777


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHH
Q 018743          182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD  261 (351)
Q Consensus       182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  261 (351)
                      ...|++++|...++........ +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus       150 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~  227 (258)
T 3uq3_A          150 FTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL  227 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence            7777777777777777665332 55666666666666777777777776666653 334556666666666666666666


Q ss_pred             HHHHHhhhc
Q 018743          262 SILRQVENS  270 (351)
Q Consensus       262 ~~~~~~~~~  270 (351)
                      ..+++..+.
T Consensus       228 ~~~~~a~~~  236 (258)
T 3uq3_A          228 ETLDAARTK  236 (258)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666665543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.82  E-value=7.3e-18  Score=128.84  Aligned_cols=208  Identities=11%  Similarity=-0.008  Sum_probs=85.3

Q ss_pred             CCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018743           98 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL  177 (351)
Q Consensus        98 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  177 (351)
                      ++...+..+...+.+.|++++|...|++.++..  +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            344444444444445555555555555444432  3334444444444444555555555554444432 2233344444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 018743          178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI  257 (351)
Q Consensus       178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  257 (351)
                      ..++...+.             .  .+.         .....|++++|+..+++..+.. +-+...+..+...+...|++
T Consensus        80 g~~~~~~~~-------------~--~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~  134 (217)
T 2pl2_A           80 SEAYVALYR-------------Q--AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGER  134 (217)
T ss_dssp             HHHHHHHHH-------------T--CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhhh-------------h--hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCh
Confidence            444433300             0  000         0001144455555554444432 22344444444455555555


Q ss_pred             hHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743          258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK  336 (351)
Q Consensus       258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  336 (351)
                      ++|...|++..+..  .++..+..+..++...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+++
T Consensus       135 ~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          135 DKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            55555555544444  244444455555555555555555555554431 22344444444555555555555554444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.82  E-value=4.2e-16  Score=135.63  Aligned_cols=333  Identities=10%  Similarity=0.036  Sum_probs=233.6

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCChHHHHH----HHHHhhccCCCC-ccHHHHHHHHHHHHh
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY-GQSGLLDEAFS----TINDMKSVSDCK-PDVYTYSILIKSCTK   77 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~~~~~-~~~~~~~~l~~~~~~   77 (351)
                      +.+.|++++|..+|+++++..  |+...|...+... ...|+.+.|.+    +|+......|.. ++...|...+.....
T Consensus        56 ~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~  133 (530)
T 2ooe_A           56 EIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKG  133 (530)
T ss_dssp             HHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhc
Confidence            446789999999999988763  5777777776533 34566665544    666655433433 345566666655443


Q ss_pred             ---------cCCHHHHHHHHHHHHHcCCCCCHhHHH--------------------------------------------
Q 018743           78 ---------FHRFDLIEKILAEMSYLGIECSAVTYN--------------------------------------------  104 (351)
Q Consensus        78 ---------~~~~~~a~~~~~~~~~~~~~~~~~~~~--------------------------------------------  104 (351)
                               .|+++.|..+|++..+.........|.                                            
T Consensus       134 ~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~  213 (530)
T 2ooe_A          134 VEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDR  213 (530)
T ss_dssp             SCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence                     566777777777766521111112222                                            


Q ss_pred             ---------------------HHHHHHhhc----CCh----HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc-------
Q 018743          105 ---------------------TIIDGYGKA----KKF----EEMESSFSAMVESGGCHPDIFTLNSMISAYGN-------  148 (351)
Q Consensus       105 ---------------------~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------  148 (351)
                                           ..+......    ++.    +++..+|++.+..  .+.+...|..++..+.+       
T Consensus       214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~  291 (530)
T 2ooe_A          214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAE  291 (530)
T ss_dssp             SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhh
Confidence                                 111111000    111    2455566666655  24566677777777765       


Q ss_pred             CCCHH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcC
Q 018743          149 SGNIE-------KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT-VVTYNIVIETFGKAG  220 (351)
Q Consensus       149 ~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  220 (351)
                      .|+++       +|..++++..+.-.+.+...+..++..+.+.|++++|..+|+++.+..+. + ...|...+..+.+.|
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~  370 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAE  370 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhc
Confidence            78987       89999999986323556888999999999999999999999999886332 3 357888888889999


Q ss_pred             CHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743          221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSA-YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF  299 (351)
Q Consensus       221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  299 (351)
                      ++++|..+|++..+.. +.+...+...+.. +...|+.++|..+|+...+..+. ++..|..++..+.+.|+.++|..+|
T Consensus       371 ~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~  448 (530)
T 2ooe_A          371 GIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLF  448 (530)
T ss_dssp             HHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHH
Confidence            9999999999998763 2233333332222 33689999999999999887654 7889999999999999999999999


Q ss_pred             HHHHhcC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          300 LTMKERH-CVPD--NITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       300 ~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      +++...+ ..|+  ...|...+......|+.+.+..+.+++.+..|.
T Consensus       449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            9999863 2232  347888888888999999999999999988774

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.82  E-value=4.9e-16  Score=133.30  Aligned_cols=312  Identities=9%  Similarity=-0.014  Sum_probs=228.4

Q ss_pred             CCCHHHHHHHHHHHhccCChHHHHHHHHHhhcc-------CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---
Q 018743           26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV-------SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG---   95 (351)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---   95 (351)
                      ......|+.+...+...|++++|++.|++..+.       ...+....+|+.+..+|...|++++|...+++..+..   
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            334678999999999999999999999887542       1123346789999999999999999999999876431   


Q ss_pred             ----CCCCHhHHHHHHHHHhh--cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHH---HhcCCCHHHHHHHHHHHHhcC
Q 018743           96 ----IECSAVTYNTIIDGYGK--AKKFEEMESSFSAMVESGGCHPDIFTLNSMISA---YGNSGNIEKMEKWYNEFNLMG  166 (351)
Q Consensus        96 ----~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~  166 (351)
                          ......++..+..++..  .+++++|...|++..+..  |.+...+..+..+   +...++.++|++.+++..+..
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~  205 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN  205 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence                11234566666655554  457999999999998874  4455555555544   445678888999999888764


Q ss_pred             CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 018743          167 VKADIQTLNILTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI  242 (351)
Q Consensus       167 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  242 (351)
                       +.+...+..+...+..    .|++++|...+++.....+. +...+..+...+...|++++|...+++..+.. +-+..
T Consensus       206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~  282 (472)
T 4g1t_A          206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY  282 (472)
T ss_dssp             -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred             -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence             4456666666555544    46788999999998876543 67788899999999999999999999999874 44666


Q ss_pred             HHHHHHHHHHhc-------------------CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          243 TYCSLVSAYSKA-------------------GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK  303 (351)
Q Consensus       243 ~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  303 (351)
                      ++..+...|...                   +..+.|...++...+..+. +...+..+...+...|++++|++.|++..
T Consensus       283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL  361 (472)
T 4g1t_A          283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEF  361 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence            777776655432                   2356788888888776655 66778899999999999999999999998


Q ss_pred             hcCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHhccc
Q 018743          304 ERHCVPDNI--TFATMIQ-AYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       304 ~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      +....|...  .+..+.. .+...|++++|+..++++++..|.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~  404 (472)
T 4g1t_A          362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK  404 (472)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred             hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence            864333221  2333332 245789999999999999887665

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.81  E-value=2.7e-17  Score=130.42  Aligned_cols=193  Identities=8%  Similarity=-0.019  Sum_probs=83.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC--HhHHHHHHHHHh
Q 018743           70 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD--IFTLNSMISAYG  147 (351)
Q Consensus        70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~  147 (351)
                      .....+...|++++|...++++.+.. +.+...+..+..++...|++++|...+++..+.. ..++  ..+|..+...+.
T Consensus         8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A            8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHH
Confidence            33444455555555555555555443 2233445555555555555555555555554421 1111  112444445555


Q ss_pred             cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 018743          148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE  227 (351)
Q Consensus       148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  227 (351)
                      ..|++++|++.+++..+.. +.+...+..+...+...|++++|...+++..+..+ .+...+..+...+...+++++|..
T Consensus        86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~  163 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKADS  163 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555544432 22334444444444444555555444444443311 133333333312222234444444


Q ss_pred             HHHHHHHcCCCccHHHHHHHHHHHHhcCC---HhHHHHHHHHh
Q 018743          228 YFKKMKHRGMKPNSITYCSLVSAYSKAGL---IMKVDSILRQV  267 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~  267 (351)
                      .++++.+.. +.+...+..+...+...|+   +++|...++++
T Consensus       164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  205 (272)
T 3u4t_A          164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL  205 (272)
T ss_dssp             HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred             HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence            444444432 2223334444444444444   44444444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.81  E-value=1.5e-17  Score=127.12  Aligned_cols=174  Identities=16%  Similarity=0.075  Sum_probs=138.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 018743          168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL  247 (351)
Q Consensus       168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  247 (351)
                      +++...+..+...+.+.|++++|...|+...+..+. +...+..+..++...|++++|...+++..+.. |.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            345556666666777777777777777776665433 56666667777777777777777777777664 4456667777


Q ss_pred             HHHHHhc-----------CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018743          248 VSAYSKA-----------GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT  316 (351)
Q Consensus       248 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  316 (351)
                      ...+...           |++++|...+++..+..+. +...+..+..++...|++++|+..|+++.+..  .++..+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            7777777           9999999999999988766 78889999999999999999999999999886  68889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          317 MIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       317 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      +..+|...|++++|...++++++..|....
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~  186 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPKDLD  186 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            999999999999999999999999887653

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.81  E-value=4.7e-20  Score=162.77  Aligned_cols=116  Identities=15%  Similarity=0.214  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 018743          171 IQTLNILTKSYGRAGMYDKMRSVMDFMQ---KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL  247 (351)
Q Consensus       171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  247 (351)
                      ..+|+++|.+|++.|+.++|.++|.+|.   ..|+.||..|||++|.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            3455555555555555555555555443   2345555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhcCCH-hHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743          248 VSAYSKAGLI-MKVDSILRQVENSDVILDTPFFNCIISAY  286 (351)
Q Consensus       248 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  286 (351)
                      |.++++.|+. ++|.++|++|.+.|+.||..+|+.++...
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~  246 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE  246 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence            5555555542 45555555555555555555555555433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.80  E-value=7.8e-19  Score=143.63  Aligned_cols=260  Identities=12%  Similarity=0.141  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743           29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID  108 (351)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (351)
                      +.+.+.|+.   +.|++++|.++++++..     |  .+|..++.++.+.|++++|++.|.+      .+|..+|..++.
T Consensus         6 ~~a~~~ll~---~~~~ld~A~~fae~~~~-----~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~   69 (449)
T 1b89_A            6 TSAVQVLIE---HIGNLDRAYEFAERCNE-----P--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQ   69 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHH---HccCHHHHHHHHHhCCC-----h--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHH
Confidence            344444554   67889999999999842     3  4899999999999999999999965      357779999999


Q ss_pred             HHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018743          109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD  188 (351)
Q Consensus       109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  188 (351)
                      .+...|++++|+.+++..++.   .+++.+.+.++.+|.+.|+++++.++++       .|+..++..+...|...|.++
T Consensus        70 ~ae~~g~~EeAi~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~ye  139 (449)
T 1b89_A           70 AANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYD  139 (449)
T ss_dssp             ------------------------------------------CHHHHTTTTT-------CC----------------CTT
T ss_pred             HHHhCCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHH
Confidence            999999999999988877664   4557789999999999999999988874       367779999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743          189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE  268 (351)
Q Consensus       189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  268 (351)
                      +|...|..+         ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+.
T Consensus       140 eA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~  204 (449)
T 1b89_A          140 AAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV  204 (449)
T ss_dssp             THHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT
T ss_pred             HHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            999999976         46899999999999999999999987      278999999999999999999966554422


Q ss_pred             hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 018743          269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL--GMTEAAQNLEN  335 (351)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~  335 (351)
                           ..+.....++..|.+.|++++|+.+++...... +-....|+-+..+|++-  ++..+.+++|.
T Consensus       205 -----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~  267 (449)
T 1b89_A          205 -----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW  267 (449)
T ss_dssp             -----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred             -----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence                 344556679999999999999999999988654 44566777777777654  34444444443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.79  E-value=1.5e-15  Score=120.41  Aligned_cols=223  Identities=11%  Similarity=-0.036  Sum_probs=110.8

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh----cCChHHHHHHHHHHHhcCCCCCCHhHH
Q 018743           64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSFSAMVESGGCHPDIFTL  139 (351)
Q Consensus        64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  139 (351)
                      +..++..+...+...|++++|...|++..+.   .+..++..+...|..    .+++++|...|++..+.+    +...+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~   77 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGC   77 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHH
Confidence            3444555555555555666666666555552   234445555555555    555556665555555432    34445


Q ss_pred             HHHHHHHhc----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 018743          140 NSMISAYGN----SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNI  211 (351)
Q Consensus       140 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  211 (351)
                      ..+...+..    .+++++|++.|++..+.+   +...+..+...|..    .+++++|...+++..+.+   +...+..
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~  151 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence            555555555    555555555555555432   34444555555555    555555555555554432   2333444


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHhHHHHHHHHhhhcCCccCHHhHHHHH
Q 018743          212 VIETFGK----AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK----AGLIMKVDSILRQVENSDVILDTPFFNCII  283 (351)
Q Consensus       212 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  283 (351)
                      +...+..    .+++++|...+++..+.+   +...+..+...+..    .+++++|...+++..+.+.   ...+..+.
T Consensus       152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~  225 (273)
T 1ouv_A          152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG  225 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence            4444444    455555555555544432   23344444444444    4555555555554444321   33444444


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHhc
Q 018743          284 SAYGQ----AGDVEKMGELFLTMKER  305 (351)
Q Consensus       284 ~~~~~----~g~~~~a~~~~~~~~~~  305 (351)
                      ..|..    .+++++|.+.|++..+.
T Consensus       226 ~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          226 AMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            44444    44455555555544443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.79  E-value=1.2e-16  Score=131.85  Aligned_cols=236  Identities=6%  Similarity=-0.030  Sum_probs=148.7

Q ss_pred             HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743          100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN-IEKMEKWYNEFNLMGVKADIQTLNILT  178 (351)
Q Consensus       100 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~  178 (351)
                      ..+|..+..++...|++++|+..++++++..  +.+..+|+.+..++...|+ +++|+..+++++... +.+...|..+.
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g  173 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence            3455556666666666666666666666653  4455566666666666664 666666666666644 34556666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCCH
Q 018743          179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK-AGLI  257 (351)
Q Consensus       179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~  257 (351)
                      .++...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence            6666667777777777666665443 56666666666667777777777777776654 4456666666666666 4444


Q ss_pred             hHH-----HHHHHHhhhcCCccCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-----
Q 018743          258 MKV-----DSILRQVENSDVILDTPFFNCIISAYGQAG--DVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-----  325 (351)
Q Consensus       258 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----  325 (351)
                      ++|     +..+++..+..+. +...|+.+..++...|  ++++|++.+.++ +. .+.+...+..+...|.+.|     
T Consensus       252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence            555     3666666666555 5666766666666666  467777777666 22 2334556666667766653     


Q ss_pred             ----CHHHHHHHHHHH-HHhccc
Q 018743          326 ----MTEAAQNLENKM-IAMKEN  343 (351)
Q Consensus       326 ----~~~~A~~~~~~~-~~~~~~  343 (351)
                          ..++|+++++++ ++.+|.
T Consensus       329 ~~~~~~~~A~~~~~~l~~~~DP~  351 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKEKDTI  351 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             chHHHHHHHHHHHHHHHHHhCch
Confidence                246777777777 665554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.79  E-value=2.9e-16  Score=124.47  Aligned_cols=237  Identities=11%  Similarity=-0.009  Sum_probs=117.9

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHH
Q 018743          103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA--DIQTLNILTKS  180 (351)
Q Consensus       103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~  180 (351)
                      +......+...|++++|+..|+++.+..  +.+...+..+..++...|++++|+..+++....+..+  ....+..+...
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            3344455555555555555555555442  2333345555555555555555555555555422111  12234555555


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHH
Q 018743          181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV  260 (351)
Q Consensus       181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  260 (351)
                      +...|++++|...++...+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555554322 33455555555555555555555555555442 33344444444222333455555


Q ss_pred             HHHHHHhhhcCCccCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHHcCCHHHH
Q 018743          261 DSILRQVENSDVILDTPFFNCIISAYGQAGD---VEKMGELFLTMKERH-CVPD------NITFATMIQAYNALGMTEAA  330 (351)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A  330 (351)
                      ...++++.+..+. +...+..+..++...|+   +++|...++++.+.. -.|+      ...|..+...|...|++++|
T Consensus       162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            5555555554433 34445555555555555   555555555554321 0122      13444555555555555555


Q ss_pred             HHHHHHHHHhcccC
Q 018743          331 QNLENKMIAMKENS  344 (351)
Q Consensus       331 ~~~~~~~~~~~~~~  344 (351)
                      .+.++++++.+|..
T Consensus       241 ~~~~~~al~~~p~~  254 (272)
T 3u4t_A          241 DAAWKNILALDPTN  254 (272)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhcCccH
Confidence            55555555555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.79  E-value=3e-16  Score=129.48  Aligned_cols=217  Identities=7%  Similarity=0.003  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743           29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTII  107 (351)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~  107 (351)
                      ..+|..+..++...|++++|++.++++.+..  +-+...|+.+..++...|+ +++|+..++++.... +.+..+|..+.
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g  173 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence            3455555555556666666666666655532  2334555555555556664 666666666665554 33555566666


Q ss_pred             HHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCC
Q 018743          108 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR-AGM  186 (351)
Q Consensus       108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~  186 (351)
                      .++...|++++|+..|+++++..  +.+..+|..+..++.+.|++++|+..++++++.. +.+...|+.+..++.. .|.
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~  250 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY  250 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence            66666666666666666665552  4455555555555555666666666666555543 3344555555555555 333


Q ss_pred             HHHH-----HHHHHHHHHcCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 018743          187 YDKM-----RSVMDFMQKRFFFPTVVTYNIVIETFGKAG--HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA  254 (351)
Q Consensus       187 ~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  254 (351)
                      .++|     +..+++.....+. +...|..+...+...|  ++++|++.+.++ +. .+.+...+..++..|.+.
T Consensus       251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~  322 (382)
T 2h6f_A          251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM  322 (382)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence            3444     2444444443222 3444444444444444  344444444444 21 122334444444444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.79  E-value=3.1e-16  Score=122.84  Aligned_cols=201  Identities=9%  Similarity=0.021  Sum_probs=114.5

Q ss_pred             HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK  179 (351)
Q Consensus       100 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  179 (351)
                      ...+..+...+...|++++|...|+++.+..  +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~  113 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG  113 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence            4556666666667777777777777666552  4455566666666666666666666666665543 334555556666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 018743          180 SYGRAGMYDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM  258 (351)
Q Consensus       180 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  258 (351)
                      .+...|++++|...++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~  192 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV  192 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence            6666666666666666655521122 34445555555555666666666666555543 334455555555555555555


Q ss_pred             HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      +|...++.+.+..+. +...+..+...+...|++++|.+.++++.+.
T Consensus       193 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          193 PARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            555555555544332 4444555555555555555555555555543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.78  E-value=2.1e-17  Score=131.32  Aligned_cols=248  Identities=10%  Similarity=-0.019  Sum_probs=119.1

Q ss_pred             ccCChHHHHHHHHHhhccCCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHH
Q 018743           41 QSGLLDEAFSTINDMKSVSDCKP--DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE  118 (351)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  118 (351)
                      ..|++++|+..|+++.+.....+  +..++..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            34555666666665554211111  23445555555555556666666555555543 3345555555555555555555


Q ss_pred             HHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ  198 (351)
Q Consensus       119 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  198 (351)
                      |...|+++.+..  +.+..++..+...+...|++++|...++++.+..  |+.......+..+                 
T Consensus        96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~-----------------  154 (275)
T 1xnf_A           96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLA-----------------  154 (275)
T ss_dssp             HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH-----------------
T ss_pred             HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHH-----------------
Confidence            555555555542  3334445555555555555555555555554432  2222222222222                 


Q ss_pred             HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc---C
Q 018743          199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL---D  275 (351)
Q Consensus       199 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~  275 (351)
                                        ...|++++|...+.+..... +++...+ .++..+...++.++|...++...+..+..   +
T Consensus       155 ------------------~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  214 (275)
T 1xnf_A          155 ------------------EQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHL  214 (275)
T ss_dssp             ------------------HHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             ------------------HHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence                              33445555555554444432 2222222 23444444455555555555544332210   1


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 018743          276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE  334 (351)
Q Consensus       276 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  334 (351)
                      ...+..+...+...|++++|...|+++.+.  .|+.  +.....++...|++++|++.+
T Consensus       215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          215 SETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence            345566666666666666666666666654  2321  222244555666666665554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.78  E-value=5.1e-19  Score=156.34  Aligned_cols=117  Identities=12%  Similarity=0.221  Sum_probs=79.8

Q ss_pred             HhHHHHHHHHHhcCCCHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 018743          136 IFTLNSMISAYGNSGNIEKMEKWYNEFN---LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV  212 (351)
Q Consensus       136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  212 (351)
                      ..+|+++|++|++.|++++|.++|.+|.   ..|+.||..|||+||.+|++.|+.++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            3467777777777777777777776654   2356677777777777777777777777777777777777777777777


Q ss_pred             HHHHHhcCC-HHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 018743          213 IETFGKAGH-IEKMEEYFKKMKHRGMKPNSITYCSLVSAYS  252 (351)
Q Consensus       213 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  252 (351)
                      |.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e  247 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED  247 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence            777777665 3566677777777777777777776665443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.78  E-value=8.7e-17  Score=125.22  Aligned_cols=201  Identities=10%  Similarity=0.106  Sum_probs=105.2

Q ss_pred             CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743           99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT  178 (351)
Q Consensus        99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  178 (351)
                      ....|..+...+...|++++|...|+++.+..  +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             --------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            34455556666666666666666666665542  4455566666666666666666666666665543 33455556666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 018743          179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM  258 (351)
Q Consensus       179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  258 (351)
                      ..+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence            6666666666666666665554322 44555555666666666666666666655543 334555555555666666666


Q ss_pred             HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      +|...++++.+..+. +..++..+..++...|++++|.+.++++.+.
T Consensus       177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            666666655554433 4455555555666666666666666655553

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.78  E-value=6.6e-16  Score=118.66  Aligned_cols=202  Identities=10%  Similarity=0.023  Sum_probs=109.2

Q ss_pred             CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743           99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT  178 (351)
Q Consensus        99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  178 (351)
                      +...+..+...+...|++++|.+.++++.+..  +.+...+..+...+...|++++|.+.++++.... +.+..++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~   83 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence            45556666666666666666666666666552  3445556666666666666666666666665543 33445555555


Q ss_pred             HHHHhc-CCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 018743          179 KSYGRA-GMYDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL  256 (351)
Q Consensus       179 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  256 (351)
                      ..+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence            556666 66666666665555421112 23445555555555555555555555555442 2234455555555555555


Q ss_pred             HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      +++|...++++.+..+..+...+..+...+...|+.+.|..+++.+.+
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            555555555555443312444444444455555555555555555543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.78  E-value=9.3e-16  Score=120.13  Aligned_cols=199  Identities=9%  Similarity=-0.069  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH
Q 018743           67 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY  146 (351)
Q Consensus        67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  146 (351)
                      .+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|.+.++++.+..  +.+...+..+...+
T Consensus        39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~  115 (252)
T 2ho1_A           39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHH
Confidence            34444444444444444444444444432 2234444444444444444444444444444432  22334444444444


Q ss_pred             hcCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 018743          147 GNSGNIEKMEKWYNEFNLMGVKA-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM  225 (351)
Q Consensus       147 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  225 (351)
                      ...|++++|.++++++...+..| +...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence            44444444444444444311112 2333444444444444444444444444443221 334444444444444444444


Q ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743          226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS  270 (351)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  270 (351)
                      ...++++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus       195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            44444444332 233344444444444444444444444444443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.78  E-value=5.1e-17  Score=129.02  Aligned_cols=225  Identities=9%  Similarity=-0.055  Sum_probs=168.8

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcC
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGL---KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH   79 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (351)
                      .+...|++++|+..|+.+.+...   +.+..++..+...+...|++++|+..|+++.+..  +.+..+|..+...+...|
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~   91 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAG   91 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTT
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHcc
Confidence            34567999999999999998742   2256789999999999999999999999998753  456888999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 018743           80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY  159 (351)
Q Consensus        80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  159 (351)
                      ++++|...++++.+.. +.+..++..+..++...|++++|...|+++.+..   |+.......+..+...|++++|...+
T Consensus        92 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~  167 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVL  167 (275)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999999999875 5578899999999999999999999999998863   33334444445556779999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743          160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP---TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR  235 (351)
Q Consensus       160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  235 (351)
                      +...... +++...+ .++..+...++.++|...+..........   +...+..+...+...|++++|...+++....
T Consensus       168 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          168 KQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            8777653 3333333 36666677777777777777765432110   1344555555556666666666666655554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.77  E-value=1.1e-15  Score=117.49  Aligned_cols=203  Identities=11%  Similarity=-0.002  Sum_probs=96.1

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII  107 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  107 (351)
                      ++.++..+...+...|++++|++.++++.+..  +.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~   83 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence            34445555555555555555555555555421  2234445555555555555555555555555443 33444555555


Q ss_pred             HHHhhc-CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018743          108 DGYGKA-KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM  186 (351)
Q Consensus       108 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  186 (351)
                      ..+... |++++|...++++.+....+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence            555555 55555555555554411112223344444455555555555555555544432 2234444444444444555


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH  234 (351)
Q Consensus       187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  234 (351)
                      +++|...++.+....+..+...+..+...+...|+.+.+..+++.+.+
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            555555544444432212333344444444444444444444444443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.77  E-value=1.6e-16  Score=123.70  Aligned_cols=199  Identities=7%  Similarity=0.008  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743           68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG  147 (351)
Q Consensus        68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  147 (351)
                      |..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+..  +.+..++..+...+.
T Consensus        26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNVYV  102 (243)
T ss_dssp             ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHHHH
Confidence            3333333444444444444444444332 2234444444444444444444444444444331  223344444444444


Q ss_pred             cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 018743          148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE  227 (351)
Q Consensus       148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  227 (351)
                      ..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|..
T Consensus       103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHH
Confidence            4444444444444444332 23344444444555555555555555555444322 134445555555555555555555


Q ss_pred             HHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743          228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV  272 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  272 (351)
                      .++++.+.. +.+..++..+...+...|++++|...++++.+..+
T Consensus       181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  224 (243)
T 2q7f_A          181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP  224 (243)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence            555555442 33445555555556666666666666665555443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.76  E-value=1.2e-14  Score=115.22  Aligned_cols=224  Identities=8%  Similarity=-0.055  Sum_probs=118.2

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK----FHRFDLIEKILAEMSYLGIECSAVTY  103 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  103 (351)
                      ++.++..+...+...|++++|++.|++..+    +.+...+..+...+..    .+++++|...|++..+.+   +...+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~   77 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   77 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            444555555555555555555555555554    2233445555555555    555555555555555543   44455


Q ss_pred             HHHHHHHhh----cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018743          104 NTIIDGYGK----AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN----SGNIEKMEKWYNEFNLMGVKADIQTLN  175 (351)
Q Consensus       104 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  175 (351)
                      ..+...|..    .+++++|...|++..+.+    +..++..+...|..    .+++++|+.+|++..+.+   +...+.
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~  150 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT  150 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence            555555555    555555555555554431    34445555555555    555555555555555533   334444


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 018743          176 ILTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK----AGHIEKMEEYFKKMKHRGMKPNSITYCSL  247 (351)
Q Consensus       176 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  247 (351)
                      .+...+..    .+++++|...+++..+.+   +...+..+...+..    .+++++|...+++..+.+   +...+..+
T Consensus       151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  224 (273)
T 1ouv_A          151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL  224 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence            45555554    555555555555555432   33444455555555    555555555555555543   13444455


Q ss_pred             HHHHHh----cCCHhHHHHHHHHhhhcC
Q 018743          248 VSAYSK----AGLIMKVDSILRQVENSD  271 (351)
Q Consensus       248 ~~~~~~----~g~~~~a~~~~~~~~~~~  271 (351)
                      ...+..    .+++++|...+++..+.+
T Consensus       225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          225 GAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            555555    555555555555555544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.76  E-value=1.2e-16  Score=134.16  Aligned_cols=302  Identities=14%  Similarity=0.046  Sum_probs=222.7

Q ss_pred             CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC
Q 018743           26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD--VYTYSILIKSCTKFHRFDLIEKILAEMSYL----GI-EC   98 (351)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~   98 (351)
                      .+....+......+...|++++|+..|++..+.....|.  ..++..+...+...|++++|...+++....    +. +.
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            446677788888999999999999999998875321221  356788888899999999999999887543    21 12


Q ss_pred             CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHhcCCC--------------------HHH
Q 018743           99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNSGN--------------------IEK  154 (351)
Q Consensus        99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~  154 (351)
                      ...++..+...+...|++++|...+++..+.....++    ..++..+...+...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            3557788888999999999999999887654211112    3467788888999999                    999


Q ss_pred             HHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcCCHHH
Q 018743          155 MEKWYNEFNLM----GVK-ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-FPT----VVTYNIVIETFGKAGHIEK  224 (351)
Q Consensus       155 a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~  224 (351)
                      |.+.+++....    +.. ....++..+...+...|++++|...+++..+... .++    ..++..+...+...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            99988876542    111 1234678888999999999999999988765311 112    2377888899999999999


Q ss_pred             HHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-----CHHhHHHHHHHHHhcCCHHH
Q 018743          225 MEEYFKKMKHR----GMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-----DTPFFNCIISAYGQAGDVEK  294 (351)
Q Consensus       225 a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~  294 (351)
                      |...+++....    +..+ ...++..+...+...|++++|...+++..+.....     ...++..+...+...|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            99999987653    1111 14577888999999999999999999876532211     15577888999999999999


Q ss_pred             HHHHHHHHHhc----CCC-CCHHHHHHHHHHHHHcCCH
Q 018743          295 MGELFLTMKER----HCV-PDNITFATMIQAYNALGMT  327 (351)
Q Consensus       295 a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~  327 (351)
                      |.+.+++..+.    +.. ....++..+...+...|+.
T Consensus       326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            99999987643    211 1244677777888887765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.75  E-value=2.2e-16  Score=133.03  Aligned_cols=275  Identities=8%  Similarity=-0.025  Sum_probs=186.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhhcCChHHHHHHHHHHHhcC---C-CCCCHhH
Q 018743           67 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA----VTYNTIIDGYGKAKKFEEMESSFSAMVESG---G-CHPDIFT  138 (351)
Q Consensus        67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~  138 (351)
                      .+..+...+...|++++|...|+++.+.+ +.+.    .++..+...|...|++++|...+++..+..   + .+....+
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            34455566777788888888888777764 2233    466677777778888888888777765431   0 1223345


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 018743          139 LNSMISAYGNSGNIEKMEKWYNEFNLM----G-VKADIQTLNILTKSYGRAGM-----------------YDKMRSVMDF  196 (351)
Q Consensus       139 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~  196 (351)
                      +..+...+...|++++|...+++....    + .+....++..+...+...|+                 +++|...+++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            667777778888888888887776543    1 11224466777777888888                 8888887776


Q ss_pred             HHHc----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cc----HHHHHHHHHHHHhcCCHhHHHHHHHH
Q 018743          197 MQKR----FF-FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK-PN----SITYCSLVSAYSKAGLIMKVDSILRQ  266 (351)
Q Consensus       197 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~  266 (351)
                      ..+.    +. ......+..+...+...|++++|...+++..+.... ++    ...+..+...+...|++++|...+++
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  288 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR  288 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            5432    11 112346777778888888888888888887653100 11    23677788888888999999988888


Q ss_pred             hhhcCCc-----cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743          267 VENSDVI-----LDTPFFNCIISAYGQAGDVEKMGELFLTMKERH----CV-PDNITFATMIQAYNALGMTEAAQNLENK  336 (351)
Q Consensus       267 ~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~  336 (351)
                      ..+....     ....++..+...+...|++++|...+++..+..    .. ....++..+...|...|++++|...+++
T Consensus       289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            7653221     124567788888889999999999988876431    11 1134677788888899999999999988


Q ss_pred             HHHhcc
Q 018743          337 MIAMKE  342 (351)
Q Consensus       337 ~~~~~~  342 (351)
                      +++...
T Consensus       369 al~~~~  374 (411)
T 4a1s_A          369 HLQLAX  374 (411)
T ss_dssp             HHHHCC
T ss_pred             HHHHHh
Confidence            877654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.74  E-value=1.4e-14  Score=132.56  Aligned_cols=296  Identities=11%  Similarity=0.081  Sum_probs=155.2

Q ss_pred             cccccCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcC
Q 018743            2 VMLGKCKQPEQASLLFEVMLSDGL--KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH   79 (351)
Q Consensus         2 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (351)
                      ..|...|.+.+|+++++++.-.+-  .-+...-+.++.+..+. +..+..+..++... .    +   ...+...+...|
T Consensus       993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-~----d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A          993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-Y----D---APDIANIAISNE 1063 (1630)
T ss_pred             HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-c----c---HHHHHHHHHhCC
Confidence            346678888899999988874321  12334444455444333 22333333333221 0    0   111233333444


Q ss_pred             CHHHHHHHHHHHHHcC---------------------CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhH
Q 018743           80 RFDLIEKILAEMSYLG---------------------IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT  138 (351)
Q Consensus        80 ~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  138 (351)
                      .+++|..+|++.....                     -.-+..+|..+..++...|++++|...|.+.       .|...
T Consensus      1064 lyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~sa 1136 (1630)
T 1xi4_A         1064 LFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSS 1136 (1630)
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHH
Confidence            4444444444321000                     0013445555555666666666666655432       23444


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 018743          139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK  218 (351)
Q Consensus       139 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  218 (351)
                      |..++.++.+.|++++|.+++....+..  +++...+.++.+|.+.+++++.....    .   .++...|..+...|..
T Consensus      1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A         1137 YMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHh
Confidence            5555566666666666666665544432  22222223555555555555322221    1   2234444455556666


Q ss_pred             cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHH
Q 018743          219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL  298 (351)
Q Consensus       219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  298 (351)
                      .|++++|..+|...         ..|..++.++.+.|++++|.+.+++..      +..+|..+..+|...|++..|...
T Consensus      1208 eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A         1208 EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred             cCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHH
Confidence            66666666666553         245566666666666666666665542      345555555555555555555554


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743          299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       299 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  342 (351)
                      ...     +..++..+..++..|.+.|.+++|+++++..+..++
T Consensus      1273 gl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A         1273 GLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred             HHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence            432     233566677888888888999999999888876653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.74  E-value=6.2e-16  Score=129.88  Aligned_cols=282  Identities=12%  Similarity=0.043  Sum_probs=215.8

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCC-
Q 018743           62 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS----AVTYNTIIDGYGKAKKFEEMESSFSAMVESG---GCH-  133 (351)
Q Consensus        62 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~-  133 (351)
                      .+....+......+...|++++|...|+++.+.+ +.+    ..++..+...+...|++++|...+++..+..   +.. 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            4556667778888999999999999999998875 334    3578888999999999999999999875431   111 


Q ss_pred             CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHhcCC--------------------HH
Q 018743          134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-A----DIQTLNILTKSYGRAGM--------------------YD  188 (351)
Q Consensus       134 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~  188 (351)
                      ....++..+...+...|++++|...+++....... +    ...++..+...+...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            22456788889999999999999999987653100 1    14477888899999999                    99


Q ss_pred             HHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-Cc----cHHHHHHHHHHHHhcCCHh
Q 018743          189 KMRSVMDFMQKR----FFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM-KP----NSITYCSLVSAYSKAGLIM  258 (351)
Q Consensus       189 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~  258 (351)
                      +|...++.....    +.. ....++..+...+...|++++|...+++..+... .+    ...++..+...+...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999998876542    111 1235678888999999999999999999875310 11    1347888999999999999


Q ss_pred             HHHHHHHHhhhcCCcc-C----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHHcCCHH
Q 018743          259 KVDSILRQVENSDVIL-D----TPFFNCIISAYGQAGDVEKMGELFLTMKERHC-VPD----NITFATMIQAYNALGMTE  328 (351)
Q Consensus       259 ~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~  328 (351)
                      +|...+++..+..... +    ..++..+...+...|++++|.+.+++..+... .++    ..++..+...|...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999876532211 1    55788889999999999999999999875311 111    557888899999999999


Q ss_pred             HHHHHHHHHHHhcccC
Q 018743          329 AAQNLENKMIAMKENS  344 (351)
Q Consensus       329 ~A~~~~~~~~~~~~~~  344 (351)
                      +|...+++.++.....
T Consensus       325 ~A~~~~~~al~~~~~~  340 (406)
T 3sf4_A          325 QAMHFAEKHLEISREV  340 (406)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998775443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.74  E-value=1.1e-14  Score=117.53  Aligned_cols=217  Identities=7%  Similarity=-0.051  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh-------cCCh-------HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743           82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGK-------AKKF-------EEMESSFSAMVESGGCHPDIFTLNSMISAYG  147 (351)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  147 (351)
                      ++|..+|+++.... |.+...|..++..+..       .|++       ++|..+|++.++.- .+.+...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence            45555666655543 4455555555555442       3443       55555555555420 1223345555555555


Q ss_pred             cCCCHHHHHHHHHHHHhcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-hcCCHHH
Q 018743          148 NSGNIEKMEKWYNEFNLMGVKAD-IQ-TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG-KAGHIEK  224 (351)
Q Consensus       148 ~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~  224 (351)
                      +.|++++|.++|++..+.  .|+ .. .|..++..+.+.|++++|..+|++..+.... +...|........ ..|++++
T Consensus       111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHH
T ss_pred             hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHH
Confidence            555555555555555542  222 22 4555555555555555555555555443221 2222222221111 1355555


Q ss_pred             HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC-Ccc--CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743          225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD-VIL--DTPFFNCIISAYGQAGDVEKMGELFLT  301 (351)
Q Consensus       225 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~  301 (351)
                      |..+|++..+.. +-+...|..++..+.+.|++++|..+|++..... ..|  ....|..++....+.|+.+.|..++++
T Consensus       188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            555555544432 2234444455555555555555555555554431 111  233444444444555555555555555


Q ss_pred             HHh
Q 018743          302 MKE  304 (351)
Q Consensus       302 ~~~  304 (351)
                      +.+
T Consensus       267 a~~  269 (308)
T 2ond_A          267 RFT  269 (308)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.74  E-value=6e-16  Score=126.39  Aligned_cols=158  Identities=13%  Similarity=0.047  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-ccHHHHHHHHHHHHhcCC
Q 018743          187 YDKMRSVMDFMQKR----FF-FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GMK-PNSITYCSLVSAYSKAGL  256 (351)
Q Consensus       187 ~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~  256 (351)
                      +++|...++.....    +. ......+..+...+...|++++|...+++..+.    +.+ ....++..+...+...|+
T Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  238 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  238 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence            66666655554321    11 112345667777788888888888888876543    111 112367778888888999


Q ss_pred             HhHHHHHHHHhhhcCCc-----cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHHcCC
Q 018743          257 IMKVDSILRQVENSDVI-----LDTPFFNCIISAYGQAGDVEKMGELFLTMKER----HCV-PDNITFATMIQAYNALGM  326 (351)
Q Consensus       257 ~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~  326 (351)
                      +++|...+++..+....     ....++..+...+...|++++|...++++.+.    +.. ....++..+...|...|+
T Consensus       239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  318 (338)
T 3ro2_A          239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN  318 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            99999988887643211     11456778888999999999999999987643    111 114467788889999999


Q ss_pred             HHHHHHHHHHHHHhcccC
Q 018743          327 TEAAQNLENKMIAMKENS  344 (351)
Q Consensus       327 ~~~A~~~~~~~~~~~~~~  344 (351)
                      +++|...++++++..+..
T Consensus       319 ~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          319 HDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHHHHHHHC----
T ss_pred             hHHHHHHHHHHHHHHHhh
Confidence            999999999998876553

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.72  E-value=1.2e-15  Score=124.48  Aligned_cols=277  Identities=14%  Similarity=0.020  Sum_probs=199.2

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHh
Q 018743           29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD--VYTYSILIKSCTKFHRFDLIEKILAEMSYL----GI-ECSAV  101 (351)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~  101 (351)
                      ...+......+...|++++|+..|+++.+.....|.  ...+..+...+...|++++|...+++....    +. +....
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            345556677788888999999999888774211111  356777788888888999888888876543    11 12355


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHhcCCC--------------------HHHHHH
Q 018743          102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNSGN--------------------IEKMEK  157 (351)
Q Consensus       102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~  157 (351)
                      ++..+...+...|++++|...+++..+.....++    ..++..+...+...|+                    +++|.+
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            6777888888899999999988887653211122    3367777888888888                    888888


Q ss_pred             HHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHhHHHHHHHHHhcCCHHHHHH
Q 018743          158 WYNEFNLM----GV-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-----FPTVVTYNIVIETFGKAGHIEKMEE  227 (351)
Q Consensus       158 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~  227 (351)
                      .+++....    +. +.....+..+...+...|++++|...+++..+...     ......+..+...+...|++++|..
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            88776432    11 11234677788889999999999999988754311     1112367788889999999999999


Q ss_pred             HHHHHHHcC----CCc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-----cCHHhHHHHHHHHHhcCCHHHHHH
Q 018743          228 YFKKMKHRG----MKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-----LDTPFFNCIISAYGQAGDVEKMGE  297 (351)
Q Consensus       228 ~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~  297 (351)
                      .+++..+..    .++ ...++..+...+...|++++|...+++..+....     ....++..+...+...|++++|..
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            999876531    111 1457788889999999999999999987653211     124467788999999999999999


Q ss_pred             HHHHHHhc
Q 018743          298 LFLTMKER  305 (351)
Q Consensus       298 ~~~~~~~~  305 (351)
                      .++++.+.
T Consensus       325 ~~~~a~~~  332 (338)
T 3ro2_A          325 FAEKHLEI  332 (338)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99998864

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.72  E-value=1.2e-15  Score=128.50  Aligned_cols=277  Identities=10%  Similarity=-0.028  Sum_probs=211.5

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHh
Q 018743           29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD--VYTYSILIKSCTKFHRFDLIEKILAEMSYL----G-IECSAV  101 (351)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~  101 (351)
                      ...+..+...+...|++++|+..|+++.+...-.+.  ...+..+...+...|++++|...+++..+.    + .+....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            345556777889999999999999999885321111  246888888999999999999999988654    1 133456


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHhcCC----CCCCHhHHHHHHHHHhcCCC-----------------HHHHHHHHH
Q 018743          102 TYNTIIDGYGKAKKFEEMESSFSAMVESGG----CHPDIFTLNSMISAYGNSGN-----------------IEKMEKWYN  160 (351)
Q Consensus       102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~  160 (351)
                      ++..+...|...|++++|...+++..+...    .+....++..+...+...|+                 +++|.+.++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            788899999999999999999998765410    12234478888899999999                 999999988


Q ss_pred             HHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743          161 EFNLM----GV-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PT----VVTYNIVIETFGKAGHIEKMEEYFK  230 (351)
Q Consensus       161 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~  230 (351)
                      +....    +. +.....+..+...+...|++++|...+++..+.... ++    ...+..+...+...|++++|...++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            86542    11 122347788889999999999999999987653211 11    2367888999999999999999999


Q ss_pred             HHHHcCC--C---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-----cCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743          231 KMKHRGM--K---PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-----LDTPFFNCIISAYGQAGDVEKMGELFL  300 (351)
Q Consensus       231 ~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~  300 (351)
                      +......  .   ....++..+...+...|++++|...+++..+....     ....++..+...+...|++++|.+.++
T Consensus       288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  367 (411)
T 4a1s_A          288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE  367 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            8775421  0   12567888999999999999999999987653211     124477888999999999999999999


Q ss_pred             HHHhc
Q 018743          301 TMKER  305 (351)
Q Consensus       301 ~~~~~  305 (351)
                      +..+.
T Consensus       368 ~al~~  372 (411)
T 4a1s_A          368 QHLQL  372 (411)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.72  E-value=8.5e-15  Score=108.82  Aligned_cols=171  Identities=15%  Similarity=0.053  Sum_probs=123.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 018743          170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS  249 (351)
Q Consensus       170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  249 (351)
                      +..+|..+...+...|++++|...|++..+..+. +...+..+..++...|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            4556777777777777777777777777665443 56667777777777777777777777776653 445666666777


Q ss_pred             HHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 018743          250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA  329 (351)
Q Consensus       250 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  329 (351)
                      .+...++++.+...+.+..+..+. +...+..+..++.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            777777787787777777766554 66777777777888888888888888777652 3356677777788888888888


Q ss_pred             HHHHHHHHHHhcccC
Q 018743          330 AQNLENKMIAMKENS  344 (351)
Q Consensus       330 A~~~~~~~~~~~~~~  344 (351)
                      |++.|+++++.+|..
T Consensus       160 A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          160 AVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHhCCccC
Confidence            888888887776653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.71  E-value=2.8e-15  Score=125.03  Aligned_cols=300  Identities=11%  Similarity=-0.027  Sum_probs=209.7

Q ss_pred             HhccCChHHHHHHHHHhhccC-CC--CccHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHcCCCCCHhH
Q 018743           39 YGQSGLLDEAFSTINDMKSVS-DC--KPDVYTYSILIKS--CTKFHRFDLIE-----------KILAEMSYLGIECSAVT  102 (351)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~  102 (351)
                      +.+.+++++|..+++.+.+.. .+  .++...|-.++..  ....++++.+.           +.++.+....  .+...
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~   99 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG   99 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence            456889999999888876532 12  2333444444432  11223333333           5666654432  12222


Q ss_pred             ------HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC----CHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--C---
Q 018743          103 ------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHP----DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG--V---  167 (351)
Q Consensus       103 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~---  167 (351)
                            +......+...|++++|...+++..+.....+    ...++..+...+...|++++|...+++..+..  .   
T Consensus       100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  179 (383)
T 3ulq_A          100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY  179 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence                  22356677889999999999999876421112    23578888899999999999999998876531  1   


Q ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC
Q 018743          168 -KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PT----VVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GM  237 (351)
Q Consensus       168 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~  237 (351)
                       +....++..+...|...|++++|...+++..+.... ++    ..++..+...+...|++++|...+++..+.    +.
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence             112356788889999999999999999887653111 11    246788899999999999999999998762    33


Q ss_pred             -CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC----CccCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCC
Q 018743          238 -KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD----VILDTPFFNCIISAYGQAGD---VEKMGELFLTMKERHCVP  309 (351)
Q Consensus       238 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p  309 (351)
                       +....++..+...+...|++++|...+++..+..    -......+..+...+...|+   +++|+.++++.   +..|
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~  336 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA  336 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence             3456778999999999999999999999876532    11122335677888888998   77777777765   2222


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          310 -DNITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       310 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                       ....+..+...|...|++++|...++++++....
T Consensus       337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence             3446778889999999999999999999886554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.71  E-value=7.7e-15  Score=122.35  Aligned_cols=296  Identities=12%  Similarity=-0.002  Sum_probs=210.1

Q ss_pred             cccCCCHHHHHHHHHHHHhC--CCCCCH--HHHHHHHHH--HhccCChHHHH-----------HHHHHhhccCCCCccHH
Q 018743            4 LGKCKQPEQASLLFEVMLSD--GLKPSV--DVYTALVSA--YGQSGLLDEAF-----------STINDMKSVSDCKPDVY   66 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~   66 (351)
                      +.+.+++++|..+++++.+.  ....+.  ..|-.++..  ..-.++++.+.           +.++.+...   +.+..
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~~~~   98 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QARLT   98 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH---THHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc---CCCch
Confidence            45789999999999998765  222333  333444332  12223344444           666666541   12222


Q ss_pred             H------HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC-
Q 018743           67 T------YSILIKSCTKFHRFDLIEKILAEMSYL----GIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-  134 (351)
Q Consensus        67 ~------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-  134 (351)
                      .      +......+...|++++|...+++..+.    +-++ ...++..+..+|...|++++|...+++..+...-.+ 
T Consensus        99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  178 (383)
T 3ulq_A           99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA  178 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence            1      222455678899999999999998764    2111 356788899999999999999999998876421122 


Q ss_pred             ----CHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C
Q 018743          135 ----DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-A----DIQTLNILTKSYGRAGMYDKMRSVMDFMQKR----F  201 (351)
Q Consensus       135 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~  201 (351)
                          ...+++.+...|...|++++|...+++..+.... +    ...++..+...|...|++++|...+++..+.    +
T Consensus       179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~  258 (383)
T 3ulq_A          179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN  258 (383)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence                2346888889999999999999999987653111 1    1247888999999999999999999988762    2


Q ss_pred             C-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHhcCC---HhHHHHHHHHhhhcCCc
Q 018743          202 F-FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GMKPNSITYCSLVSAYSKAGL---IMKVDSILRQVENSDVI  273 (351)
Q Consensus       202 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~  273 (351)
                      . +....++..+...+...|++++|...+++..+.    +-+.....+..+...+...|+   +++|..++++....  .
T Consensus       259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~  336 (383)
T 3ulq_A          259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--A  336 (383)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--H
T ss_pred             cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--H
Confidence            2 334677888999999999999999999987653    212223345678888888898   77787777776321  2


Q ss_pred             cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       274 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      .....+..+...|...|++++|.+.|++..+
T Consensus       337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            2345677899999999999999999999874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.71  E-value=9.4e-14  Score=127.20  Aligned_cols=286  Identities=12%  Similarity=0.152  Sum_probs=149.3

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      +...|.+++|..+|++..    . ...+.+.++.   ..|++++|.++.++..       +..+|..+..++...|++++
T Consensus      1059 ai~lglyEEAf~IYkKa~----~-~~~A~~VLie---~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A         1059 AISNELFEEAFAIFRKFD----V-NTSAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred             HHhCCCHHHHHHHHHHcC----C-HHHHHHHHHH---HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCHHH
Confidence            345666677766666642    1 2222233322   4445555555555432       23445555555555555555


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN  163 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  163 (351)
                      |.+.|.+.      .|...|..++.++.+.|++++|.+.+....+..   +++...+.++.+|++.+++++...+.    
T Consensus      1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A         1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred             HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence            55555432      244455555555555555555555555544331   22222223445555555544322221    


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------
Q 018743          164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR--------  235 (351)
Q Consensus       164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------  235 (351)
                      .   .++...+..+...|...|++++|...|...         ..|..+..++.+.|++++|.+.+++....        
T Consensus      1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ 1258 (1630)
T 1xi4_A         1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 1258 (1630)
T ss_pred             h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH
Confidence            1   223333444555555555555555555442         23444555555555555555444432110        


Q ss_pred             ----------------CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc--CCHHHHHH
Q 018743          236 ----------------GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA--GDVEKMGE  297 (351)
Q Consensus       236 ----------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~  297 (351)
                                      ++..++..+..++..|.+.|.+++|+.+++.....+.. ....|+.+...+++.  ++..++.+
T Consensus      1259 acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera-H~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A         1259 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred             HHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh-HhHHHHHHHHHHHhCCHHHHHHHHH
Confidence                            12234455667777788888888888888777665522 555666666666654  34444445


Q ss_pred             HHHHHHhcCCCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 018743          298 LFLTMKERHCVP------DNITFATMIQAYNALGMTEAAQN  332 (351)
Q Consensus       298 ~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~  332 (351)
                      +|..-..  ++|      +...|.-++-.|.+.|+++.|..
T Consensus      1338 ~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1338 LFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             HHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            4443222  222      45678888888999999998873

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.68  E-value=1.9e-15  Score=128.41  Aligned_cols=308  Identities=11%  Similarity=0.048  Sum_probs=192.3

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh---HHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcC-
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL---DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-   79 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-   79 (351)
                      +.+.|++++|.++|+...+.|   ++.++..+...+...|+.   ++|+.+|++..+.     +...+..+...+...+ 
T Consensus        13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~   84 (452)
T 3e4b_A           13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPG   84 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHTC--
T ss_pred             HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCC
Confidence            345678888888888887764   344555666666777777   7888888887751     4444555555444443 


Q ss_pred             ----CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhc-----------------------------------CChH---
Q 018743           80 ----RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA-----------------------------------KKFE---  117 (351)
Q Consensus        80 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------------------~~~~---  117 (351)
                          ++++|..+|++..+.|.+ +  .+..|...|...                                   +.++   
T Consensus        85 ~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~  161 (452)
T 3e4b_A           85 ATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL  161 (452)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred             CCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence                677888888888776522 2  333444444333                                   3222   


Q ss_pred             -HHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHH
Q 018743          118 -EMESSFSAMVESGGCHPDIFTLNSMISAYGNSG---NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA----GMYDK  189 (351)
Q Consensus       118 -~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~  189 (351)
                       .+..+++...     ..++..+..+...|...|   +.++|+++|++..+.| +++...+..+...|...    +++++
T Consensus       162 ~~a~~~~~~a~-----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~  235 (452)
T 3e4b_A          162 DDVERICKAAL-----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT  235 (452)
T ss_dssp             HHHHHHHHHHT-----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred             HHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence             2222232221     223336777888888888   8889999999888877 56666556677777655    68889


Q ss_pred             HHHHHHHHHHcCCCCCHHhHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-----CHhHHH
Q 018743          190 MRSVMDFMQKRFFFPTVVTYNIVIET-F--GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG-----LIMKVD  261 (351)
Q Consensus       190 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~  261 (351)
                      |...|+... .   -++..+..+... +  ...+++++|...|++..+.|   +...+..|...|. .|     ++++|.
T Consensus       236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~  307 (452)
T 3e4b_A          236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE  307 (452)
T ss_dssp             HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred             HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence            999998877 3   244555566655 3  46789999999999988876   5566777777776 45     899999


Q ss_pred             HHHHHhhhcCCccCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 018743          262 SILRQVENSDVILDTPFFNCIISAYGQ----AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA----LGMTEAAQNL  333 (351)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~  333 (351)
                      ..|++.. .+   ++..+..|...|..    ..++++|.+.|++..+.|.   ......|...|..    ..+.++|..+
T Consensus       308 ~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~  380 (452)
T 3e4b_A          308 AHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVF  380 (452)
T ss_dssp             HHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred             HHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence            9998877 32   66777777777766    3489999999999888763   4455666666664    4588999999


Q ss_pred             HHHHHHhccc
Q 018743          334 ENKMIAMKEN  343 (351)
Q Consensus       334 ~~~~~~~~~~  343 (351)
                      +++..+.+..
T Consensus       381 ~~~A~~~g~~  390 (452)
T 3e4b_A          381 SQLAKAQDTP  390 (452)
T ss_dssp             HHHHHTTCCH
T ss_pred             HHHHHHCCCH
Confidence            9988877654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.68  E-value=2.5e-13  Score=109.55  Aligned_cols=239  Identities=8%  Similarity=0.005  Sum_probs=161.5

Q ss_pred             CHHHHHHHHHHHhcc----CCh----HHHHHHHHHhhccCCCCccHHHHHHHHHHHHh-------cCCH-------HHHH
Q 018743           28 SVDVYTALVSAYGQS----GLL----DEAFSTINDMKSVSDCKPDVYTYSILIKSCTK-------FHRF-------DLIE   85 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~   85 (351)
                      +...|...+..-.+.    ++.    ++|...|++.....  +.+...|..++..+..       .|++       ++|.
T Consensus         7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~   84 (308)
T 2ond_A            7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA   84 (308)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence            345666666654443    233    57777888877643  4456667777666543       4665       7788


Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 018743           86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF-TLNSMISAYGNSGNIEKMEKWYNEFNL  164 (351)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~  164 (351)
                      .+|++..+.-.+.+...|..++..+.+.|++++|..+|+++++..  +.+.. +|..++..+.+.|++++|..+|++..+
T Consensus        85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  162 (308)
T 2ond_A           85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            888887763114456677788888888888888888888887642  22333 677777777788888888888888776


Q ss_pred             cCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCc--c
Q 018743          165 MGVKADIQTLNILTKSYG-RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKP--N  240 (351)
Q Consensus       165 ~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~  240 (351)
                      .. +.+...|...+.... ..|+.++|..+|+...+..+. +...|..++..+.+.|++++|..+|++..... ++|  .
T Consensus       163 ~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~  240 (308)
T 2ond_A          163 DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS  240 (308)
T ss_dssp             ST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred             cC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence            54 334444443333322 258888888888877665333 66777777777888888888888888887752 344  3


Q ss_pred             HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743          241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDV  272 (351)
Q Consensus       241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  272 (351)
                      ...|..++......|+.+.|..+++++.+..+
T Consensus       241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          241 GEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            56677777777778888888888888776644

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.68  E-value=1.1e-15  Score=123.50  Aligned_cols=251  Identities=15%  Similarity=0.135  Sum_probs=125.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc------C
Q 018743           64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYL-------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES------G  130 (351)
Q Consensus        64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~  130 (351)
                      +..++..+...+...|++++|..+++++.+.       ..+....++..+...+...|++++|...+++..+.      .
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            3455666666677777777777777766552       22334455666666666667777777666666543      1


Q ss_pred             CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 018743          131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN  210 (351)
Q Consensus       131 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  210 (351)
                      ..+....++..+...+...|++++|...+++..+...                            .......+.....+.
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~~~~~~~~  157 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE----------------------------KVLGKDHPDVAKQLN  157 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHHCTTCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----------------------------HhcCCCChHHHHHHH
Confidence            1122233455555556666666666666655543200                            000000011223344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc------CCCc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC-------Ccc--
Q 018743          211 IVIETFGKAGHIEKMEEYFKKMKHR------GMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSD-------VIL--  274 (351)
Q Consensus       211 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~--  274 (351)
                      .+...+...|++++|..+++++.+.      +..| ...++..+...+...|++++|...++++.+..       ..+  
T Consensus       158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  237 (311)
T 3nf1_A          158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN  237 (311)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence            4444455555555555555554432      1111 22344555555555555555555555544321       000  


Q ss_pred             -----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          275 -----DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       275 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                           ....+..+...+...+.+.++...++..... .+.+..++..+..+|.+.|++++|.+.++++++..+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence                 1112223333444556666666777766653 2334567888888999999999999999998887654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.68  E-value=9.7e-15  Score=124.81  Aligned_cols=212  Identities=11%  Similarity=-0.012  Sum_probs=127.8

Q ss_pred             hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018743          116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM  194 (351)
Q Consensus       116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  194 (351)
                      ++++++.++.....  .+.+...+..+...+...|++ ++|++.|++..+.. +.+...+..+..+|...|++++|...|
T Consensus        84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            44455555554433  233555566666666666666 66666666665543 334556666666666666666666666


Q ss_pred             HHHHHcCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc--------CCH
Q 018743          195 DFMQKRFFFPTVVTYNIVIETFGKA---------GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA--------GLI  257 (351)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~  257 (351)
                      ++..+..  |+...+..+...+...         |++++|...+++..+.. +.+...+..+..++...        |++
T Consensus       161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            6665542  3455566666666666         66666666666666653 34556666666666666        666


Q ss_pred             hHHHHHHHHhhhcCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 018743          258 MKVDSILRQVENSDVI--LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE  334 (351)
Q Consensus       258 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  334 (351)
                      ++|...|++..+..+.  -+...|..+..+|...|++++|.+.|+++.+.. +.+...+..+..++...|++++|.+.+
T Consensus       238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777666665431  256666666667777777777777777666542 224455666666666666666666543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.68  E-value=1e-14  Score=124.75  Aligned_cols=213  Identities=8%  Similarity=-0.069  Sum_probs=178.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh-HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 018743           81 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF-EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY  159 (351)
Q Consensus        81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  159 (351)
                      ++++...+++..... +.+...+..+...+...|++ ++|++.|++..+..  +.+..+|..+..+|...|++++|.+.|
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            556666777665543 45788888899999999999 99999999998874  556788999999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc--------CCH
Q 018743          160 NEFNLMGVKADIQTLNILTKSYGRA---------GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA--------GHI  222 (351)
Q Consensus       160 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~  222 (351)
                      ++..+.  .|+...+..+...+...         |++++|...+++..+..+. +...|..+..++...        |++
T Consensus       161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence            998875  46678888889999998         9999999999998887543 678888888888888        899


Q ss_pred             HHHHHHHHHHHHcCCC---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743          223 EKMEEYFKKMKHRGMK---PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF  299 (351)
Q Consensus       223 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  299 (351)
                      ++|...|++..+.. +   .+...+..+..++...|++++|...|++..+..+. +...+..+..++...|++++|++.+
T Consensus       238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999998864 3   47888999999999999999999999999888765 6778888889999999999888765


Q ss_pred             HH
Q 018743          300 LT  301 (351)
Q Consensus       300 ~~  301 (351)
                      .+
T Consensus       316 ~~  317 (474)
T 4abn_A          316 GK  317 (474)
T ss_dssp             TT
T ss_pred             cc
Confidence            44

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.68  E-value=3.8e-14  Score=120.39  Aligned_cols=310  Identities=15%  Similarity=0.085  Sum_probs=199.6

Q ss_pred             ccCCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----ChHHHHHHHHHhhccCCCCccHHHHHHHHHH--
Q 018743            5 GKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG-----LLDEAFSTINDMKSVSDCKPDVYTYSILIKS--   74 (351)
Q Consensus         5 ~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--   74 (351)
                      ...|+.   ++|..+|++..+.    ++..+..+...+...+     ++++|+..|++..+ .|. ++  .+..|...  
T Consensus        46 ~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~-~g~-~~--A~~~Lg~~y~  117 (452)
T 3e4b_A           46 VGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFA-NGE-GN--TLIPLAMLYL  117 (452)
T ss_dssp             -----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH-TTC-SS--CHHHHHHHHH
T ss_pred             HccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH-CCC-HH--HHHHHHHHHH
Confidence            345555   7788888777643    4555666666444444     66778888877766 322 22  22233333  


Q ss_pred             ---------------------------------HHhcCC----HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcC---
Q 018743           75 ---------------------------------CTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK---  114 (351)
Q Consensus        75 ---------------------------------~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---  114 (351)
                                                       +...+.    .+.+..+++...    ..++..+..|...|...|   
T Consensus       118 ~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~  193 (452)
T 3e4b_A          118 QYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPE  193 (452)
T ss_dssp             HCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHH
T ss_pred             hCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcc
Confidence                                             333332    222333333322    234447888888999999   


Q ss_pred             ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcC----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCH
Q 018743          115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS----GNIEKMEKWYNEFNLMGVKADIQTLNILTKS-Y--GRAGMY  187 (351)
Q Consensus       115 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~  187 (351)
                      +.++|++.|++..+.+  +++...+..+...|...    +++++|.++|++..    +.+...+..+... +  ...+++
T Consensus       194 ~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~  267 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDV  267 (452)
T ss_dssp             HHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCH
T ss_pred             cHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCH
Confidence            9999999999998875  66666667777777665    79999999999987    3455666677766 4  568999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHh
Q 018743          188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-----HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK----AGLIM  258 (351)
Q Consensus       188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~  258 (351)
                      ++|...|++..+.|   +...+..+...|. .|     ++++|...|++.. .|   +......|...|..    ..+++
T Consensus       268 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~  339 (452)
T 3e4b_A          268 EQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQ  339 (452)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHH
T ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHH
Confidence            99999999998875   5667777777776 55     9999999999887 43   56777777777766    34999


Q ss_pred             HHHHHHHHhhhcCCccCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 018743          259 KVDSILRQVENSDVILDTPFFNCIISAYGQ----AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE  334 (351)
Q Consensus       259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  334 (351)
                      +|...|+...+.|.   ......|...|..    ..+.++|...|+...+.|.. +.......+......++.++|.++.
T Consensus       340 ~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~  415 (452)
T 3e4b_A          340 KALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLV  415 (452)
T ss_dssp             HHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999988763   4456677777764    46899999999999988743 3333333333333345678888888


Q ss_pred             HHHHHhcccC
Q 018743          335 NKMIAMKENS  344 (351)
Q Consensus       335 ~~~~~~~~~~  344 (351)
                      ++-.+..+..
T Consensus       416 ~~~~~~~~~~  425 (452)
T 3e4b_A          416 QQELAARGTL  425 (452)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHhcccc
Confidence            8877765543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.67  E-value=2.3e-15  Score=121.62  Aligned_cols=248  Identities=15%  Similarity=0.114  Sum_probs=157.8

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccC------CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVS------DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL------G   95 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~   95 (351)
                      +..++..+...+...|++++|+..++++.+..      ..+....++..+...+...|++++|...+++....      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            56788999999999999999999999988620      12334567888899999999999999999998764      2


Q ss_pred             -CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC------CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc---
Q 018743           96 -IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---  165 (351)
Q Consensus        96 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  165 (351)
                       .+....++..+...+...|++++|...+++..+..      ..+.....+..+...+...|++++|.++++++...   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             13346678889999999999999999999987651      11223446777788888888888888888887653   


Q ss_pred             ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          166 ---GVKA-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-------FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH  234 (351)
Q Consensus       166 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  234 (351)
                         +..| ...++..+...+...|++++|...++++.....       .+.......                       
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-----------------------  242 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-----------------------  242 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence               1112 234566666677777777777777766654310       000000000                       


Q ss_pred             cCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                           ....+..+...+...+.+.++...+.......+. ...++..+..+|.+.|++++|.+.|++..+
T Consensus       243 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          243 -----HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -----HHHHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                 1111222222333445555555555555543322 455667777777777777777777777654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.67  E-value=5.5e-14  Score=104.39  Aligned_cols=166  Identities=13%  Similarity=0.095  Sum_probs=81.5

Q ss_pred             CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743           99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT  178 (351)
Q Consensus        99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  178 (351)
                      +..+|..+...|...|++++|++.|++.++..  |.+..++..+..++.+.|++++|...+....... +.+...+..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence            44555555566666666666666666655542  3344555555555555555555555555554432 23334444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 018743          179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM  258 (351)
Q Consensus       179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  258 (351)
                      ..+...++++.+...+.......+. +...+..+...+...|++++|++.|++..+.. +.+..++..+..++.+.|+++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence            4445555555555555544443222 33444444444444444444444444444432 223444444444444444444


Q ss_pred             HHHHHHHHhhh
Q 018743          259 KVDSILRQVEN  269 (351)
Q Consensus       259 ~a~~~~~~~~~  269 (351)
                      +|...|++..+
T Consensus       159 ~A~~~~~~al~  169 (184)
T 3vtx_A          159 EAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            44444444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.65  E-value=9e-13  Score=109.39  Aligned_cols=303  Identities=10%  Similarity=0.004  Sum_probs=188.3

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----Hh
Q 018743           31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV----YTYSILIKSCTKFHRFDLIEKILAEMSYLGI-ECS----AV  101 (351)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~  101 (351)
                      .+......+...|++++|...+++...... ..+.    .++..+...+...|++++|...+++...... ..+    ..
T Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (373)
T 1hz4_A           16 FNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   94 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            344455566778889999888888776332 1122    2455566677788888888888887765311 111    22


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCC--C-CHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC----CCH
Q 018743          102 TYNTIIDGYGKAKKFEEMESSFSAMVESG---GCH--P-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK----ADI  171 (351)
Q Consensus       102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~  171 (351)
                      ++..+...+...|++++|...+++..+..   +.+  | ....+..+...+...|++++|...+++.......    ...
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            35566777888888888888888876532   111  2 2335566777788888888888888887653321    123


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCc---cHH
Q 018743          172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--VVTYN----IVIETFGKAGHIEKMEEYFKKMKHRGMKP---NSI  242 (351)
Q Consensus       172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~  242 (351)
                      ..+..+...+...|++++|...+++.......++  .....    ..+..+...|++++|...+++.......+   ...
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  254 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  254 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence            4566777778888888888888887755321111  11111    22334667888888888887766532111   123


Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHhhhc----CCccCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018743          243 TYCSLVSAYSKAGLIMKVDSILRQVENS----DVILDT-PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM  317 (351)
Q Consensus       243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  317 (351)
                      .+..+...+...|++++|...++.....    +..++. ..+..+..++...|+.++|...+++.....-  .    ...
T Consensus       255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~  328 (373)
T 1hz4_A          255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGF  328 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccH
Confidence            4566777778888888888888776532    211122 2555666777788888888888887765310  1    112


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743          318 IQAYNALGMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       318 ~~~~~~~g~~~~A~~~~~~~~~~~~  342 (351)
                      +..+...|  +....+++.+....+
T Consensus       329 ~~~~~~~g--~~~~~ll~~~~~~~~  351 (373)
T 1hz4_A          329 ISHFVIEG--EAMAQQLRQLIQLNT  351 (373)
T ss_dssp             CHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred             HHHHHHcc--HHHHHHHHHHHhCCC
Confidence            23344445  566777777766655

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.64  E-value=2.4e-13  Score=113.06  Aligned_cols=313  Identities=12%  Similarity=0.022  Sum_probs=213.0

Q ss_pred             CCCHHHHHHHHHHH--hccCChHHHHHHHHHhhccC-CC--CccHHHHHHHHHHH--HhcCCHHHHH---------HHHH
Q 018743           26 KPSVDVYTALVSAY--GQSGLLDEAFSTINDMKSVS-DC--KPDVYTYSILIKSC--TKFHRFDLIE---------KILA   89 (351)
Q Consensus        26 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~~l~~~~--~~~~~~~~a~---------~~~~   89 (351)
                      .|+..+-+.+-..|  ...+++++|..+++.+.+.. .+  .++...|-.++..-  ...+......         ..++
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            45556666666555  78899999999998865421 11  23344444444431  1112222222         5555


Q ss_pred             HHHHcCCCCCH----hHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHhcCCCHHHHHHHHHH
Q 018743           90 EMSYLGIECSA----VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNSGNIEKMEKWYNE  161 (351)
Q Consensus        90 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~  161 (351)
                      .+.....+.+.    ..+......+...|++++|...|++..+.....++    ..++..+...+...|+++.|...+++
T Consensus        87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~  166 (378)
T 3q15_A           87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ  166 (378)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            55432211111    12334455677899999999999998764221222    34678888999999999999999988


Q ss_pred             HHhcC--C---C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743          162 FNLMG--V---K-ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF----FF-PTVVTYNIVIETFGKAGHIEKMEEYFK  230 (351)
Q Consensus       162 ~~~~~--~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~  230 (351)
                      .....  .   . ....++..+...|...|++++|...+++..+..    .. ....++..+..++...|++++|...++
T Consensus       167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~  246 (378)
T 3q15_A          167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ  246 (378)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            76521  1   1 124567888999999999999999998876531    11 123567788899999999999999999


Q ss_pred             HHHHc----CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc----cCHHhHHHHHHHHHhcCC---HHHHHHHH
Q 018743          231 KMKHR----GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI----LDTPFFNCIISAYGQAGD---VEKMGELF  299 (351)
Q Consensus       231 ~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~---~~~a~~~~  299 (351)
                      +..+.    +.+....++..+...+.+.|++++|...+++..+....    .....+..+...+...++   +.+|+..+
T Consensus       247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~  326 (378)
T 3q15_A          247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF  326 (378)
T ss_dssp             HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            98761    22444678889999999999999999999998764221    123345666667777788   77777777


Q ss_pred             HHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743          300 LTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLENKMIAMK  341 (351)
Q Consensus       300 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  341 (351)
                      ++.   +..|+ ...+..+...|...|++++|...++++++..
T Consensus       327 ~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          327 EKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            762   22222 3466788899999999999999999987654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.63  E-value=1.6e-13  Score=101.74  Aligned_cols=171  Identities=13%  Similarity=0.061  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 018743          172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY  251 (351)
Q Consensus       172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  251 (351)
                      ..+..+...+...|++++|...++.+..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            3455566667777777777777776655432 256667777777778888888888888777663 44667777788888


Q ss_pred             HhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 018743          252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ  331 (351)
Q Consensus       252 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  331 (351)
                      ...|++++|...++++.+..+. +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            8888888888888887776544 67778888888888889999988888888763 445678888888889999999999


Q ss_pred             HHHHHHHHhcccCCC
Q 018743          332 NLENKMIAMKENSGK  346 (351)
Q Consensus       332 ~~~~~~~~~~~~~~~  346 (351)
                      ..++++++..|..+.
T Consensus       165 ~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          165 PHFKKANELDEGASV  179 (186)
T ss_dssp             HHHHHHHHHHHCCCG
T ss_pred             HHHHHHHHcCCCchh
Confidence            999998888776554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.61  E-value=6.5e-13  Score=110.46  Aligned_cols=296  Identities=11%  Similarity=-0.001  Sum_probs=204.4

Q ss_pred             ccCCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHH--HhccCChHHHH---------HHHHHhhccCCCCcc-H-H-
Q 018743            5 GKCKQPEQASLLFEVMLSD--GL--KPSVDVYTALVSA--YGQSGLLDEAF---------STINDMKSVSDCKPD-V-Y-   66 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~~~~~~~~~~~~-~-~-   66 (351)
                      .+.+++++|..+++++.+.  ..  .++...|-.++..  ..-.+.++.+.         +.++.+.... .+.+ . . 
T Consensus        23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~~~~~l~~  101 (378)
T 3q15_A           23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ-KKLTGLLKY  101 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG-HHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC-CCCccHHHH
Confidence            5688999999999988664  22  2233344444432  11112222222         5566554311 0111 1 1 


Q ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C---CCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC-----C
Q 018743           67 -TYSILIKSCTKFHRFDLIEKILAEMSYLGI--E---CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-----D  135 (351)
Q Consensus        67 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~  135 (351)
                       .+......+...|++++|...+++..+...  +   ....++..+..+|...|+++.|...+++..+...-.+     .
T Consensus       102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  181 (378)
T 3q15_A          102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT  181 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence             123334456789999999999999875421  1   1355788899999999999999999998875421111     2


Q ss_pred             HhHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCC
Q 018743          136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM----GVK-ADIQTLNILTKSYGRAGMYDKMRSVMDFMQK-----RFFFPT  205 (351)
Q Consensus       136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~  205 (351)
                      ..+++.+...|...|++++|.+.+++..+.    +.+ ....++..+..+|...|++++|...+++...     .... .
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~  260 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-L  260 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-H
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-H
Confidence            446788899999999999999999987653    111 1234678889999999999999999998876     3332 3


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCccHHHHHHHHHHHHhcCC---HhHHHHHHHHhhhcCCccCHHh
Q 018743          206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRG----MKPNSITYCSLVSAYSKAGL---IMKVDSILRQVENSDVILDTPF  278 (351)
Q Consensus       206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~  278 (351)
                      ..++..+...+.+.|++++|...+++..+..    -+.....+..+...+...++   +.+|...++.....  ......
T Consensus       261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~--~~~~~~  338 (378)
T 3q15_A          261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLH--AYIEAC  338 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCH--HHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCCh--hHHHHH
Confidence            6778889999999999999999999988642    12233456666677777788   77777777763221  122346


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          279 FNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       279 ~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      +..+...|...|++++|.+.|++..+
T Consensus       339 ~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          339 ARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            67889999999999999999998864

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.58  E-value=8.1e-13  Score=101.69  Aligned_cols=204  Identities=12%  Similarity=0.063  Sum_probs=157.2

Q ss_pred             CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 018743          133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV  212 (351)
Q Consensus       133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  212 (351)
                      +.|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+..+. +...|..+
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l   82 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK   82 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence            34567888888999999999999999999988763377777777999999999999999999998886443 67788889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCccH-------HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-CHHhHHHHHH
Q 018743          213 IETFGKAGHIEKMEEYFKKMKHRGMKPNS-------ITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIIS  284 (351)
Q Consensus       213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~  284 (351)
                      ...+...|++++|...+++..+.. +.+.       ..|..+...+...|++++|...++++.+..+.. +...+..+..
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence            999999999999999999998864 4445       457788888889999999999999998764320 2456777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       285 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      ++...|     ..+++++...+ ..+...|....  ....+.+++|...+++.++..|....
T Consensus       162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~  215 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTE  215 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence            776544     44456665543 22444444433  34567789999999999999887643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.58  E-value=3.2e-13  Score=120.15  Aligned_cols=165  Identities=7%  Similarity=0.024  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 018743          172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY  251 (351)
Q Consensus       172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  251 (351)
                      ..++.+...+.+.|++++|...|++..+.... +...|..+..++.+.|++++|+..|++.++.. +-+...|..+..++
T Consensus        10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l   87 (723)
T 4gyw_A           10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL   87 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            34444444444444444444444444443222 34444444444445555555555555444432 22344444555555


Q ss_pred             HhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 018743          252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ  331 (351)
Q Consensus       252 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  331 (351)
                      ...|++++|++.|++..+.++. +...++.+..++...|++++|++.|+++.+.. +-+...+..+..++...|++++|.
T Consensus        88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A           88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence            5555555555555554444433 44445555555555555555555555554431 112344445555555555555555


Q ss_pred             HHHHHHHHh
Q 018743          332 NLENKMIAM  340 (351)
Q Consensus       332 ~~~~~~~~~  340 (351)
                      +.++++++.
T Consensus       166 ~~~~kal~l  174 (723)
T 4gyw_A          166 ERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            555554443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.57  E-value=3e-12  Score=106.24  Aligned_cols=267  Identities=10%  Similarity=0.029  Sum_probs=193.1

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccH----HHHHHHHHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVD----VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV----YTYSILIKSC   75 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~   75 (351)
                      +...|++++|...+++........+..    +++.+...+...|++++|.+.+++......-.++.    .++..+...+
T Consensus        24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  103 (373)
T 1hz4_A           24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL  103 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            456899999999999988765433332    56777788899999999999999876532111222    3356677788


Q ss_pred             HhcCCHHHHHHHHHHHHHc----CCC--C-CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC---CCCHhHHHHHHHH
Q 018743           76 TKFHRFDLIEKILAEMSYL----GIE--C-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC---HPDIFTLNSMISA  145 (351)
Q Consensus        76 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~  145 (351)
                      ...|++++|...+++....    +.+  | ....+..+...+...|++++|...+++..+...-   +....++..+...
T Consensus       104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  183 (373)
T 1hz4_A          104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC  183 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence            8999999999999987653    221  2 3456677888999999999999999998765311   1123467778888


Q ss_pred             HhcCCCHHHHHHHHHHHHhcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHhHHHHHHHH
Q 018743          146 YGNSGNIEKMEKWYNEFNLMGVKAD--IQTLN----ILTKSYGRAGMYDKMRSVMDFMQKRFFFP---TVVTYNIVIETF  216 (351)
Q Consensus       146 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~  216 (351)
                      +...|++++|...+++.......++  .....    ..+..+...|++++|...++........+   ....+..+...+
T Consensus       184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~  263 (373)
T 1hz4_A          184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ  263 (373)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence            9999999999999998865321111  11111    23345778999999999999876543221   133466778889


Q ss_pred             HhcCCHHHHHHHHHHHHHc----CCCccH-HHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743          217 GKAGHIEKMEEYFKKMKHR----GMKPNS-ITYCSLVSAYSKAGLIMKVDSILRQVENS  270 (351)
Q Consensus       217 ~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  270 (351)
                      ...|++++|...+++....    +.+++. ..+..+..++...|+.++|...+++....
T Consensus       264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            9999999999999987643    222222 36677788889999999999999987653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.56  E-value=1.5e-12  Score=96.42  Aligned_cols=165  Identities=11%  Similarity=0.011  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743           29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID  108 (351)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (351)
                      ...+..+...+...|++++|++.++++.+..  +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~   84 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL   84 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            3456666677777777777777777776532  3456666677777777777777777777776654 445666667777


Q ss_pred             HHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018743          109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD  188 (351)
Q Consensus       109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  188 (351)
                      .+...|++++|.+.++++.+..  +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  161 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE  161 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence            7777777777777777776652  4455566666666777777777777776666543 344556666666666666666


Q ss_pred             HHHHHHHHHHH
Q 018743          189 KMRSVMDFMQK  199 (351)
Q Consensus       189 ~a~~~~~~~~~  199 (351)
                      +|...++...+
T Consensus       162 ~A~~~~~~~~~  172 (186)
T 3as5_A          162 EALPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.56  E-value=7.1e-13  Score=117.92  Aligned_cols=163  Identities=11%  Similarity=0.010  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 018743          137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF  216 (351)
Q Consensus       137 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  216 (351)
                      .+++.+...+.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++++|...|++..+.... +...|..+..++
T Consensus        10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l   87 (723)
T 4gyw_A           10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTL   87 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            344444444444444444444444444432 223344444444444445555555554444443222 344455555555


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 018743          217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG  296 (351)
Q Consensus       217 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  296 (351)
                      ...|++++|++.|++..+.. +-+...+..+...+...|++++|+..|++..+..+. +...+..+..++...|++++|.
T Consensus        88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A           88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence            55555555555555555442 233445555555555555555555555555554443 4455555555555555555555


Q ss_pred             HHHHHHH
Q 018743          297 ELFLTMK  303 (351)
Q Consensus       297 ~~~~~~~  303 (351)
                      +.++++.
T Consensus       166 ~~~~kal  172 (723)
T 4gyw_A          166 ERMKKLV  172 (723)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.53  E-value=5.4e-12  Score=97.06  Aligned_cols=193  Identities=12%  Similarity=0.040  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018743          101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS  180 (351)
Q Consensus       101 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  180 (351)
                      ..+......+...|++++|...|++..+.. .+++...+..+..++...|++++|++.+++..+.. +.+...+..+..+
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   85 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA   85 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence            344444444444444444444444444432 01333333334444444444444444444444322 2233344444444


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHH
Q 018743          181 YGRAGMYDKMRSVMDFMQKRFFFPTV-------VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP--NSITYCSLVSAY  251 (351)
Q Consensus       181 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~  251 (351)
                      +...|++++|...+++..+..+. +.       ..|..+...+...|++++|+..+++..+.. +.  +...+..+...+
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHH
Confidence            44444444444444444443221 22       234455555566666666666666666542 22  234555555555


Q ss_pred             HhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       252 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      ...|     ..+++.+...+.. +...+....  ....+.+++|+..|++..+.
T Consensus       164 ~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          164 YNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence            4332     2334444443322 233333322  23345567777777777764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.53  E-value=1.5e-10  Score=101.97  Aligned_cols=209  Identities=11%  Similarity=0.052  Sum_probs=128.3

Q ss_pred             CHhHHHHHHHHHhcCCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CC
Q 018743          135 DIFTLNSMISAYGNSGNIEKME-KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF---------FP  204 (351)
Q Consensus       135 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~  204 (351)
                      +...|...+..+...|+.++|. ++|++.... .+.+...+...+....+.|+++.|..+|+.+.....         .|
T Consensus       342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p  420 (679)
T 4e6h_A          342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP  420 (679)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence            3344444555555566666675 777776653 344555566667777777777777777777655310         12


Q ss_pred             ------------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CCHhHHHHHHHHhhhcC
Q 018743          205 ------------TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA-GLIMKVDSILRQVENSD  271 (351)
Q Consensus       205 ------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~  271 (351)
                                  ....|...+....+.|+.+.|..+|.+..+.........|...+..-.+. ++.+.|.++|+...+.-
T Consensus       421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~  500 (679)
T 4e6h_A          421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF  500 (679)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence                        12346666666666777777777777777651112233333333322333 34777778877777653


Q ss_pred             CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743          272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP--DNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG  345 (351)
Q Consensus       272 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  345 (351)
                      +. +...+...+......|+.+.|..+|++.......+  ....|...+.--.+.|+.+.+.++.+++.+..|+.+
T Consensus       501 p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          501 AT-DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred             CC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            33 55666677777777788888888888777653211  234666666666677888888888888877776643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.53  E-value=4.5e-13  Score=106.46  Aligned_cols=230  Identities=15%  Similarity=0.056  Sum_probs=160.5

Q ss_pred             ccCCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccC-----CC-CccHHHHHHH
Q 018743            5 GKCKQPEQASLLFEVMLSD-------GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-----DC-KPDVYTYSIL   71 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~l   71 (351)
                      ...|++++|+..|++..+.       +.+....++..+...+...|++++|+..+++..+..     +. +....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567777777777776552       223357789999999999999999999999988641     22 2345678889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc------CCCCCCHhH
Q 018743           72 IKSCTKFHRFDLIEKILAEMSYL------G-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES------GGCHPDIFT  138 (351)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~  138 (351)
                      ...+...|++++|...+++....      . .+....++..+...+...|++++|...+++..+.      ...+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998765      1 1334678888999999999999999999998765      112234567


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhc-------CCCCC-HHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCC
Q 018743          139 LNSMISAYGNSGNIEKMEKWYNEFNLM-------GVKAD-IQTLNILTKSYGRAGMYD------KMRSVMDFMQKRFFFP  204 (351)
Q Consensus       139 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~  204 (351)
                      +..+...+...|++++|..++++....       ...+. ...+..+.......+...      .+...++..... .+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence            888999999999999999999988753       11222 223333333333333222      222222221111 122


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743          205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR  235 (351)
Q Consensus       205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  235 (351)
                      ...++..+...+...|++++|..++++..+.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3567888999999999999999999988753

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.53  E-value=5.9e-13  Score=105.77  Aligned_cols=229  Identities=16%  Similarity=0.133  Sum_probs=159.2

Q ss_pred             hhcCChHHHHHHHHHHHhcC------CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc------CC-CCCHHHHHHH
Q 018743          111 GKAKKFEEMESSFSAMVESG------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM------GV-KADIQTLNIL  177 (351)
Q Consensus       111 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l  177 (351)
                      ...|++++|...+++..+..      ..+....++..+...+...|++++|...+++....      +- +....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            45677777777777765521      12334567888999999999999999999998754      21 2345678889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcC-------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCc-cHHH
Q 018743          178 TKSYGRAGMYDKMRSVMDFMQKRF-------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR------GMKP-NSIT  243 (351)
Q Consensus       178 ~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~  243 (351)
                      ...+...|++++|...+++.....       .+.....+..+...+...|++++|...+++..+.      +..| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999999876641       1224567888899999999999999999998765      1122 4567


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhc-------CCcc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH----hcC--CCC
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENS-------DVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMK----ERH--CVP  309 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~--~~p  309 (351)
                      +..+...+...|++++|...++++.+.       ...+ ....+..+.......+....+.. +..+.    ..+  .+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence            888999999999999999999988753       1111 22334344434433333333222 22221    111  122


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743          310 DNITFATMIQAYNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       310 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  340 (351)
                      ...++..+...|...|++++|..+++++++.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3457888999999999999999999998864

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.52  E-value=3.5e-10  Score=99.68  Aligned_cols=333  Identities=10%  Similarity=0.009  Sum_probs=207.6

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---hHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCH-
Q 018743            6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL---LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF-   81 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-   81 (351)
                      +.++++.+..+|+.+...-+ .+...|...+..-.+.|+   ++.+.++|++.......+|++..|...+....+.++. 
T Consensus        78 ~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~  156 (679)
T 4e6h_A           78 SLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDII  156 (679)
T ss_dssp             HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCST
T ss_pred             hcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccc
Confidence            45677778888888777633 367777777777777777   7888888888776322237777777666655444432 


Q ss_pred             -------HHHHHHHHHHHH-cCC-CC-CHhHHHHHHHHHh---------hcCChHHHHHHHHHHHhcCCCCCCHhHH---
Q 018743           82 -------DLIEKILAEMSY-LGI-EC-SAVTYNTIIDGYG---------KAKKFEEMESSFSAMVESGGCHPDIFTL---  139 (351)
Q Consensus        82 -------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~---  139 (351)
                             +.+.++|+.... .|. .+ +...|...+....         ..++++.+..+|+.++... ...-..+|   
T Consensus       157 ~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP-~~~~~~~w~~Y  235 (679)
T 4e6h_A          157 TGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP-MDCLESMWQRY  235 (679)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC-CSSHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc-cHHHHHHHHHH
Confidence                   334456665443 244 33 3456666655432         1234555666666665321 00001111   


Q ss_pred             ----------------------------------------------------------------------HHHHHHHhcC
Q 018743          140 ----------------------------------------------------------------------NSMISAYGNS  149 (351)
Q Consensus       140 ----------------------------------------------------------------------~~l~~~~~~~  149 (351)
                                                                                            ...+..--..
T Consensus       236 ~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~  315 (679)
T 4e6h_A          236 TQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDN  315 (679)
T ss_dssp             HHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhC
Confidence                                                                                  1111111110


Q ss_pred             C-------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 018743          150 G-------NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR-SVMDFMQKRFFFPTVVTYNIVIETFGKAGH  221 (351)
Q Consensus       150 ~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  221 (351)
                      +       ..+.+..+|+++... .+.....|...+..+...|+.++|. .+|++.... .+.+...|-..+......|+
T Consensus       316 ~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~  393 (679)
T 4e6h_A          316 KLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTK  393 (679)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC
T ss_pred             CccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCC
Confidence            0       011223334444332 2334455555666666778888886 999988765 33466677778888889999


Q ss_pred             HHHHHHHHHHHHHcCC---------Cc------------cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHH
Q 018743          222 IEKMEEYFKKMKHRGM---------KP------------NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN  280 (351)
Q Consensus       222 ~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  280 (351)
                      +++|.++|+++.....         .|            ....|...+....+.|+.+.|..+|.++.+.........|.
T Consensus       394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi  473 (679)
T 4e6h_A          394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL  473 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence            9999999999876410         13            23467788888888899999999999988762222344554


Q ss_pred             HHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          281 CIISAYGQA-GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       281 ~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      ..+..-.+. ++.+.|.++|+...+. ++-+...|...+......|+.+.|+.+|++++...+.
T Consensus       474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          474 ENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD  536 (679)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence            444433444 4589999999999886 4556677778888888899999999999999887663

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.49  E-value=5.9e-11  Score=93.30  Aligned_cols=243  Identities=9%  Similarity=0.029  Sum_probs=124.3

Q ss_pred             HHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC
Q 018743           36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK  115 (351)
Q Consensus        36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  115 (351)
                      ++-..-.|++..++.-...+..   ..++ ..-..+.+++...|++...         ....|....+..+...+ ..+ 
T Consensus        20 ikn~fy~G~yq~~i~e~~~~~~---~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKFSK---VTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTSSC---CCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred             HHHHHHhhHHHHHHHHHHhcCc---cchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence            3344456777777664333321   1222 2233344556666655431         11233333333333332 211 


Q ss_pred             hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018743          116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV-KADIQTLNILTKSYGRAGMYDKMRSVM  194 (351)
Q Consensus       116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~  194 (351)
                         |+..|++....+  +++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.+
T Consensus        85 ---a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l  159 (310)
T 3mv2_B           85 ---NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF  159 (310)
T ss_dssp             ---CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence               556666655442  34444445566666666777777777766654432 134555666666666677777777777


Q ss_pred             HHHHHcCCCC-----CHHhHHHHHHHHH--hcC--CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHH
Q 018743          195 DFMQKRFFFP-----TVVTYNIVIETFG--KAG--HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR  265 (351)
Q Consensus       195 ~~~~~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  265 (351)
                      +.|.+.  .|     +..+...++.++.  ..|  +..+|..+|+++.+.  .|+..+...++.++.+.|++++|...++
T Consensus       160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence            666554  33     2344444444422  223  666666667666544  3432233333336666667777766666


Q ss_pred             Hhhhc----------CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          266 QVENS----------DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       266 ~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      .+.+.          ++. ++.++..+|......|+  +|.+++.++.+.
T Consensus       236 ~l~~~~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          236 LLLSDYYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HHHSHHHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             HHHHhcccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            55442          122 44455445544555555  666666666654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.45  E-value=2.1e-11  Score=85.08  Aligned_cols=133  Identities=17%  Similarity=0.187  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHH
Q 018743          208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG  287 (351)
Q Consensus       208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  287 (351)
                      .|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+..+. +...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence            35566677777788888888888777654 445667777777777888888888888887766544 5667777888888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       288 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      ..|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++++...|.
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            8888888888888887653 335667778888888888888888888888877654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.44  E-value=1.2e-10  Score=91.61  Aligned_cols=183  Identities=9%  Similarity=-0.011  Sum_probs=105.1

Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-FPTVVTYNIVIETFGKAGHIEKMEEYFKKMK  233 (351)
Q Consensus       155 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  233 (351)
                      ++..+++....+ +++..++..+..++...|++++|++++......+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            556666655544 34444555666667777777777777766655443 1245566666677777777777777777776


Q ss_pred             HcCCCc-----cHHHHHHHHHHHH--hcC--CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          234 HRGMKP-----NSITYCSLVSAYS--KAG--LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       234 ~~~~~~-----~~~~~~~l~~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      +.  .|     +..+...++.++.  ..|  ++.+|..+|+++.+..  |+...-..++.++.+.|++++|.+.++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            54  44     2445555554422  223  6777777777765543  2322222333366667777777777765543


Q ss_pred             cC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          305 RH---------CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       305 ~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      .-         -+-|+.++..++......|+  +|.++++++.+..|..
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence            20         02345555555555555665  6667777776666554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.42  E-value=5.1e-11  Score=93.58  Aligned_cols=192  Identities=12%  Similarity=0.078  Sum_probs=115.8

Q ss_pred             CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHH
Q 018743          133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-P-TVV  207 (351)
Q Consensus       133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~  207 (351)
                      +.+...+..+...+.+.|++++|+..|+.+.... +.+   ...+..+..++.+.|++++|...|+...+..+. | ...
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            3455566667777778888888888888877653 223   556677777788888888888888887765321 1 234


Q ss_pred             hHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhH
Q 018743          208 TYNIVIETFGK--------AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF  279 (351)
Q Consensus       208 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  279 (351)
                      .+..+..++..        .|++++|...|+++.+.. +.+......+.              .+..+...    ....+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~--------------~~~~~~~~----~~~~~  151 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQ--------------KIRELRAK----LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHH--------------HHHHHHHH----HHHHH
Confidence            55566666766        777888888887777653 22222221110              00000000    01113


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhcccC
Q 018743          280 NCIISAYGQAGDVEKMGELFLTMKERHCVP--DNITFATMIQAYNAL----------GMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       280 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~  344 (351)
                      ..+...|.+.|++++|+..|+++.+.....  ....+..+..+|...          |++++|...++++++..|..
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence            455666777777777777777776542111  234556666666655          67777777777777766654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.39  E-value=3.1e-11  Score=96.46  Aligned_cols=211  Identities=10%  Similarity=0.005  Sum_probs=137.1

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCCHHH
Q 018743          115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM----GVKAD-IQTLNILTKSYGRAGMYDK  189 (351)
Q Consensus       115 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~  189 (351)
                      ++++|...|++.                ...|...|++++|...|.+....    |-+++ ..+++.+..+|...|++++
T Consensus        32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~   95 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN   95 (292)
T ss_dssp             HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            477777777665                23456677888888777766542    21111 4567777788888888888


Q ss_pred             HHHHHHHHHHcCC---CC--CHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCC---Cc--cHHHHHHHHHHHHhcCCHh
Q 018743          190 MRSVMDFMQKRFF---FP--TVVTYNIVIETFGKA-GHIEKMEEYFKKMKHRGM---KP--NSITYCSLVSAYSKAGLIM  258 (351)
Q Consensus       190 a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~  258 (351)
                      |...+++......   .+  ...+++.+...|... |++++|+..|++..+...   .+  ...++..+...+...|+++
T Consensus        96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  175 (292)
T 1qqe_A           96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence            8887777654311   01  134677777888885 888888888888765411   01  1346777888888888888


Q ss_pred             HHHHHHHHhhhcCCccCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHH--Hc
Q 018743          259 KVDSILRQVENSDVILDT------PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN------ITFATMIQAYN--AL  324 (351)
Q Consensus       259 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~  324 (351)
                      +|...+++..+..+....      ..+..+..++...|++++|...|++..+.  .|+.      ..+..++.++.  ..
T Consensus       176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~  253 (292)
T 1qqe_A          176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS  253 (292)
T ss_dssp             HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCH
Confidence            888888888776544222      14666777888888888888888887753  2221      13344555554  34


Q ss_pred             CCHHHHHHHHHHHHHhccc
Q 018743          325 GMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       325 g~~~~A~~~~~~~~~~~~~  343 (351)
                      +++++|+..|++++..+|.
T Consensus       254 ~~~~~A~~~~~~~~~l~~~  272 (292)
T 1qqe_A          254 EQLSEHCKEFDNFMRLDKW  272 (292)
T ss_dssp             TTHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHHHhccCCccHHH
Confidence            6688888888776655543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.39  E-value=4.8e-09  Score=83.29  Aligned_cols=219  Identities=7%  Similarity=-0.057  Sum_probs=142.4

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcC--ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH----hcC---C
Q 018743           80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK--KFEEMESSFSAMVESGGCHPDIFTLNSMISAY----GNS---G  150 (351)
Q Consensus        80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~  150 (351)
                      ..++|+.+++.+...+ |-+..+|+.-..++...+  ++++++..++.++...  +.+..+|+.-...+    ...   +
T Consensus        48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccC
Confidence            3456666666666654 335555666555565666  6777777777776653  34444455433333    333   5


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC------H
Q 018743          151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD--KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH------I  222 (351)
Q Consensus       151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~  222 (351)
                      ++++++++++.+.+.. +.+...++.-...+.+.|.++  ++++.++.+.+..+. +...|+.-...+...++      +
T Consensus       125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence            6677777777776654 456666666666666666666  777777777766554 66666666555555555      7


Q ss_pred             HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhH-HHHHHHHhhhcC--CccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743          223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK-VDSILRQVENSD--VILDTPFFNCIISAYGQAGDVEKMGELF  299 (351)
Q Consensus       223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~  299 (351)
                      +++++.+++++... +-|...|+.+...+.+.|+... +..+..++.+.+  -..++..+..++..+.+.|+.++|.+++
T Consensus       203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~  281 (306)
T 3dra_A          203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY  281 (306)
T ss_dssp             HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            78888888888775 5577778877777777777444 555666655443  1226677888888888888888888888


Q ss_pred             HHHHh
Q 018743          300 LTMKE  304 (351)
Q Consensus       300 ~~~~~  304 (351)
                      +.+.+
T Consensus       282 ~~l~~  286 (306)
T 3dra_A          282 DLLKS  286 (306)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88876

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.38  E-value=3.7e-11  Score=90.83  Aligned_cols=169  Identities=12%  Similarity=-0.000  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHc
Q 018743          137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI----------------LTKSYGRAGMYDKMRSVMDFMQKR  200 (351)
Q Consensus       137 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~  200 (351)
                      ..+......+...|++++|+..|++..... +.+...+..                +..++.+.|++++|...|++..+.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            344445566778888888888888887653 223444544                556666666666666666666555


Q ss_pred             CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH--hHHHHHHHHhhhcCCccCHHh
Q 018743          201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI--MKVDSILRQVENSDVILDTPF  278 (351)
Q Consensus       201 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~  278 (351)
                      .+. +...+..+..++...|++++|...|++..+.. |.+...+..+...+...|+.  ..+...++.+..  +.|....
T Consensus        84 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a  159 (208)
T 3urz_A           84 APN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA  159 (208)
T ss_dssp             CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred             CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence            332 45556666666666666666666666666553 33455555555555444322  223333333321  1112222


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 018743          279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI  312 (351)
Q Consensus       279 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  312 (351)
                      +.....++...|++++|+..|++.++.  .|+..
T Consensus       160 ~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~  191 (208)
T 3urz_A          160 RYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE  191 (208)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence            333344455556666666666666553  44443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.38  E-value=8e-11  Score=92.46  Aligned_cols=188  Identities=11%  Similarity=0.025  Sum_probs=135.9

Q ss_pred             CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC---HhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--CCCH
Q 018743           97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD---IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV--KADI  171 (351)
Q Consensus        97 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~  171 (351)
                      +.+...+..+...+.+.|++++|...|+++.+..  +.+   ...+..+..++.+.|++++|+..|++..+...  +...
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            4567788888999999999999999999998874  334   56788899999999999999999999988532  1224


Q ss_pred             HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 018743          172 QTLNILTKSYGR--------AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT  243 (351)
Q Consensus       172 ~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  243 (351)
                      ..+..+..++..        .|++++|...|+++....+. +......+              ..+..+...    ....
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~--------------~~~~~~~~~----~~~~  150 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDAT--------------QKIRELRAK----LARK  150 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHH--------------HHHHHHHHH----HHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHH--------------HHHHHHHHH----HHHH
Confidence            567778888888        99999999999999886432 22222111              111111110    1122


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc--CHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhc
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVIL--DTPFFNCIISAYGQA----------GDVEKMGELFLTMKER  305 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~  305 (351)
                      +..+...+...|++++|...|+.+.+..+..  ....+..+..+|...          |++++|...|+++.+.
T Consensus       151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            5567777888888888888888887654432  234566777777765          8888899998888875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.37  E-value=2.3e-09  Score=85.16  Aligned_cols=225  Identities=8%  Similarity=-0.026  Sum_probs=181.0

Q ss_pred             cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhc--
Q 018743          113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG--NIEKMEKWYNEFNLMGVKADIQTLNILTKSY----GRA--  184 (351)
Q Consensus       113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--  184 (351)
                      ....++|+.+++.++...  +-+..+|+.--.++...|  ++++++++++.+.... +-+..+++.-...+    ...  
T Consensus        46 ~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~  122 (306)
T 3dra_A           46 EEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN  122 (306)
T ss_dssp             TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence            344578999999999874  556677888888888888  9999999999998865 44555565554444    445  


Q ss_pred             -CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-----
Q 018743          185 -GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE--KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL-----  256 (351)
Q Consensus       185 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----  256 (351)
                       +++++++..++.+.+..++ +...|+.-...+...|.++  ++++.++++.+.+ +-|...|+.-...+...+.     
T Consensus       123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~  200 (306)
T 3dra_A          123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN  200 (306)
T ss_dssp             CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence             7899999999999987655 8888888888888888888  9999999999986 5577888877777777776     


Q ss_pred             -HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 018743          257 -IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK-MGELFLTMKERH--CVPDNITFATMIQAYNALGMTEAAQN  332 (351)
Q Consensus       257 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~  332 (351)
                       ++++++.++.+....+. |...|+.+...+.+.|+... +..+..++.+.+  -+.++..+..++.+|.+.|+.++|.+
T Consensus       201 ~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~  279 (306)
T 3dra_A          201 TIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT  279 (306)
T ss_dssp             HHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence             88999999999998887 99999999999988888544 556777666543  13467888999999999999999999


Q ss_pred             HHHHHHH-hccc
Q 018743          333 LENKMIA-MKEN  343 (351)
Q Consensus       333 ~~~~~~~-~~~~  343 (351)
                      +++.+.+ .+|.
T Consensus       280 ~~~~l~~~~Dpi  291 (306)
T 3dra_A          280 VYDLLKSKYNPI  291 (306)
T ss_dssp             HHHHHHHTTCGG
T ss_pred             HHHHHHhccChH
Confidence            9999986 4554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.36  E-value=1.7e-10  Score=87.14  Aligned_cols=166  Identities=11%  Similarity=-0.018  Sum_probs=106.1

Q ss_pred             HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHH----------------HHHHHhcCCCHHHHHHHHHHHH
Q 018743          100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS----------------MISAYGNSGNIEKMEKWYNEFN  163 (351)
Q Consensus       100 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~  163 (351)
                      ...+......+...|++++|+..|++..+..  +.+...|..                +..++.+.|++++|+..|++..
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   81 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL   81 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3344445556677788888888888777652  334455666                7777777888888888887777


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCccH
Q 018743          164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH--IEKMEEYFKKMKHRGMKPNS  241 (351)
Q Consensus       164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~  241 (351)
                      +.. +.+...+..+..++...|++++|...|++..+..+. +...+..+..++...|+  .+.+...+.....  ..|..
T Consensus        82 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  157 (208)
T 3urz_A           82 QKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ  157 (208)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred             HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence            654 456677777777788888888888888877776443 56667777666655443  3344445544432  12333


Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 018743          242 ITYCSLVSAYSKAGLIMKVDSILRQVENSD  271 (351)
Q Consensus       242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  271 (351)
                      ..+.....++...|++++|...|++..+..
T Consensus       158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  187 (208)
T 3urz_A          158 YARYRDGLSKLFTTRYEKARNSLQKVILRF  187 (208)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            334445555666777888888888777654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.35  E-value=5.3e-10  Score=85.63  Aligned_cols=191  Identities=12%  Similarity=-0.004  Sum_probs=120.4

Q ss_pred             HhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HhHHH
Q 018743          136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-A-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNI  211 (351)
Q Consensus       136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~  211 (351)
                      ...+..+...+.+.|++++|+..|+++...... + ....+..+..++.+.|++++|...|+.+.+..+....  ..+..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            345566677788888888888888888764311 1 1356777788888888888888888888776433111  23334


Q ss_pred             HHHHHHh------------------cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743          212 VIETFGK------------------AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI  273 (351)
Q Consensus       212 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  273 (351)
                      +..++..                  .|++++|...|+++++.. |-+..........          ..+...+      
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~------  146 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL------  146 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH------
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH------
Confidence            4444443                  344555555555555431 1111111110000          0000000      


Q ss_pred             cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCC
Q 018743          274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD----NITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK  347 (351)
Q Consensus       274 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  347 (351)
                        ......+...+.+.|++++|+..|+++++.  .|+    ...+..+..++.+.|++++|.+.++.+....|...+.
T Consensus       147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~  220 (225)
T 2yhc_A          147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH  220 (225)
T ss_dssp             --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred             --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence              001134567888999999999999999976  333    2468888999999999999999999999888776554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.35  E-value=2.5e-10  Score=79.49  Aligned_cols=92  Identities=17%  Similarity=0.152  Sum_probs=35.7

Q ss_pred             HHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh
Q 018743           33 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK  112 (351)
Q Consensus        33 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  112 (351)
                      ..+...+...|++++|+.+++++.+..  +.+...+..+...+...|++++|..+++++...+ +.+...+..+...+..
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            333444444444444444444443311  1223333333333444444444444444443332 2233333333344444


Q ss_pred             cCChHHHHHHHHHHH
Q 018743          113 AKKFEEMESSFSAMV  127 (351)
Q Consensus       113 ~~~~~~a~~~~~~~~  127 (351)
                      .|++++|.+.++++.
T Consensus        82 ~~~~~~A~~~~~~~~   96 (136)
T 2fo7_A           82 QGDYDEAIEYYQKAL   96 (136)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHH
Confidence            444444444444433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.35  E-value=6.9e-11  Score=105.59  Aligned_cols=173  Identities=8%  Similarity=-0.103  Sum_probs=137.8

Q ss_pred             hcCCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 018743          147 GNSGNIEKMEKWYNEFN--------LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK  218 (351)
Q Consensus       147 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  218 (351)
                      ...|++++|++.+++..        +.. +.+...+..+...+...|++++|...+++..+.... +...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            77889999999999887        332 456677888888899999999999999988876443 67788888888999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHH
Q 018743          219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL  298 (351)
Q Consensus       219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  298 (351)
                      .|++++|...|++..+.. +-+...+..+..++...|++++ ...|+++.+.++. +...+..+..++.+.|++++|++.
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999988874 4467788888889999999999 9999998887766 778888899999999999999999


Q ss_pred             HHHHHhcCCCCC-HHHHHHHHHHHHHcCC
Q 018743          299 FLTMKERHCVPD-NITFATMIQAYNALGM  326 (351)
Q Consensus       299 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  326 (351)
                      |+++.+.  .|+ ...+..+..++...++
T Consensus       557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPT--SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred             HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence            9988764  444 5567777777766554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.35  E-value=2.9e-11  Score=107.95  Aligned_cols=152  Identities=7%  Similarity=0.004  Sum_probs=76.8

Q ss_pred             cCChHHHHHHHHHhh--------ccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhc
Q 018743           42 SGLLDEAFSTINDMK--------SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA  113 (351)
Q Consensus        42 ~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  113 (351)
                      .|++++|++.+++..        +..  +.+...+..+...+...|++++|...++++.+.. +.+...|..+..++...
T Consensus       404 ~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          404 LSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            345555555555554        211  2233445555555555555555555555555443 33445555555555555


Q ss_pred             CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018743          114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV  193 (351)
Q Consensus       114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  193 (351)
                      |++++|...|++..+..  +.+...+..+..++.+.|++++ ++.|++..+.+ +.+...+..+..++.+.|++++|...
T Consensus       481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            55555555555555442  3334445555555555555555 55555555433 33444555555555555555555555


Q ss_pred             HHHHHHc
Q 018743          194 MDFMQKR  200 (351)
Q Consensus       194 ~~~~~~~  200 (351)
                      |++..+.
T Consensus       557 ~~~al~l  563 (681)
T 2pzi_A          557 LDEVPPT  563 (681)
T ss_dssp             HHTSCTT
T ss_pred             HHhhccc
Confidence            5554443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.34  E-value=2.5e-08  Score=85.36  Aligned_cols=311  Identities=12%  Similarity=0.004  Sum_probs=188.0

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHhhccCCC-CccHHHHHHHHHHHH----hcCCH
Q 018743            8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDC-KPDVYTYSILIKSCT----KFHRF   81 (351)
Q Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~   81 (351)
                      |+++.+..+|++....  .|+...|...+....+.+. .+....+|+.....-|. .++...|...+..+.    ..++.
T Consensus        28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~  105 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI  105 (493)
T ss_dssp             TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred             CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence            6788999999998875  5699999998887777663 45566778877764443 346677877776644    24567


Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHH------------------------------------------------HHHHhhc
Q 018743           82 DLIEKILAEMSYLGIECSAVTYNTI------------------------------------------------IDGYGKA  113 (351)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------------------~~~~~~~  113 (351)
                      +.+..+|++........-...|...                                                +..-...
T Consensus       106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~  185 (493)
T 2uy1_A          106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN  185 (493)
T ss_dssp             HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence            8888888888763211111122111                                                1110000


Q ss_pred             --CC-----hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018743          114 --KK-----FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM  186 (351)
Q Consensus       114 --~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  186 (351)
                        +-     .+.+..+|++++..  .+.+...|...+..+.+.|+.+.|..++++....  +.+...+..    |....+
T Consensus       186 ~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e  257 (493)
T 2uy1_A          186 GMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMD  257 (493)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTT
T ss_pred             CccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcc
Confidence              00     12344556665554  2444556666666666777777777777777665  333322221    111111


Q ss_pred             HHHHHHHHHHHHHcC------------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 018743          187 YDKMRSVMDFMQKRF------------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA  254 (351)
Q Consensus       187 ~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  254 (351)
                      .++.   ++.+.+.-            .......|...+....+.+..+.|..+|++. ... +.+...|...+..-...
T Consensus       258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~  332 (493)
T 2uy1_A          258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA  332 (493)
T ss_dssp             CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH
T ss_pred             hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH
Confidence            1111   22221110            0011234555566666677899999999988 321 23444554333322223


Q ss_pred             -CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 018743          255 -GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL  333 (351)
Q Consensus       255 -g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  333 (351)
                       ++.+.|..+|+...+..+. ++..+...+......|+.+.|..+|+++.     .....|...+.--...|+.+.+..+
T Consensus       333 ~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v  406 (493)
T 2uy1_A          333 TGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFREL  406 (493)
T ss_dssp             HCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence             3689999999998875433 45566777888888899999999999873     2466778887777778999999998


Q ss_pred             HHHHHH
Q 018743          334 ENKMIA  339 (351)
Q Consensus       334 ~~~~~~  339 (351)
                      ++++.+
T Consensus       407 ~~~~~~  412 (493)
T 2uy1_A          407 VDQKMD  412 (493)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.34  E-value=1.8e-10  Score=92.02  Aligned_cols=210  Identities=10%  Similarity=0.068  Sum_probs=143.0

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCCCC-HhHHHHHHHHHhcCCCHHHH
Q 018743           80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG---GCHPD-IFTLNSMISAYGNSGNIEKM  155 (351)
Q Consensus        80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~a  155 (351)
                      ++++|...+++.               ...|...|++++|...|++..+..   +.+++ ..+|+.+..+|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            477777777665               335667788888888888775531   11111 45677888888888888888


Q ss_pred             HHHHHHHHhcCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHhHHHHHHHHHhcCCHHH
Q 018743          156 EKWYNEFNLMGV---KA--DIQTLNILTKSYGRA-GMYDKMRSVMDFMQKRFFFP-T----VVTYNIVIETFGKAGHIEK  224 (351)
Q Consensus       156 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~  224 (351)
                      +..+++......   .+  ...++..+...|... |++++|...|++..+..... +    ..++..+...+...|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            888887754211   11  134677888888886 99999999998876542110 1    3567888899999999999


Q ss_pred             HHHHHHHHHHcCCCccH------HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccC----HHhHHHHHHHHH--hcCCH
Q 018743          225 MEEYFKKMKHRGMKPNS------ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD----TPFFNCIISAYG--QAGDV  292 (351)
Q Consensus       225 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~--~~g~~  292 (351)
                      |+..|++..+.......      ..+..+..++...|++++|...+++..+..+...    ...+..++.++.  ..+++
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~  256 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL  256 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence            99999998876422211      2567788888899999999999999876543211    113444555554  34668


Q ss_pred             HHHHHHHHHHHh
Q 018743          293 EKMGELFLTMKE  304 (351)
Q Consensus       293 ~~a~~~~~~~~~  304 (351)
                      ++|+..|+.+..
T Consensus       257 ~~A~~~~~~~~~  268 (292)
T 1qqe_A          257 SEHCKEFDNFMR  268 (292)
T ss_dssp             HHHHHHHTTSSC
T ss_pred             HHHHHHhccCCc
Confidence            888888776654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.32  E-value=1.1e-10  Score=102.31  Aligned_cols=154  Identities=5%  Similarity=-0.147  Sum_probs=116.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 018743          149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY  228 (351)
Q Consensus       149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  228 (351)
                      .|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..++...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478899999999887654 456788888999999999999999999998886443 678888899999999999999999


Q ss_pred             HHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 018743          229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA---GDVEKMGELFLTMKER  305 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~  305 (351)
                      +++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..++...   |++++|.+.+++..+.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99998874 556788899999999999999999999998887665 678888899999999   9999999999998876


Q ss_pred             C
Q 018743          306 H  306 (351)
Q Consensus       306 ~  306 (351)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.31  E-value=2.5e-11  Score=86.51  Aligned_cols=141  Identities=7%  Similarity=0.008  Sum_probs=64.4

Q ss_pred             HHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh
Q 018743           38 AYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF  116 (351)
Q Consensus        38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (351)
                      .+...|++++|+..+......   .|+ ...+..+...|.+.|++++|...|++..+.. |-+..+|..+..+|...|++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence            334444555555555544431   121 2233344445555555555555555555443 33445555555555555555


Q ss_pred             HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018743          117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW-YNEFNLMGVKADIQTLNILTKSYGRAG  185 (351)
Q Consensus       117 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~  185 (351)
                      ++|...|++.++..  +.+..++..+...+.+.|+++++.+. +++..+.. |.+..+|......+...|
T Consensus        82 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           82 DKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            55555555554442  33344455555555555554443332 34444332 233444444444444433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.31  E-value=2.4e-10  Score=90.95  Aligned_cols=168  Identities=12%  Similarity=-0.001  Sum_probs=121.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH-HH
Q 018743          168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY-CS  246 (351)
Q Consensus       168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~  246 (351)
                      +.+...+..+...+...|++++|...|++.....+. +...+..+...+...|++++|...++++...  .|+.... ..
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence            445556667777778888888888888887776443 5667777788888888888888888877665  3343322 22


Q ss_pred             HHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcC
Q 018743          247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATMIQAYNALG  325 (351)
Q Consensus       247 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g  325 (351)
                      ....+...++.+.|...+++.....+. +...+..+...+...|++++|+..|.++.+.... .+...+..++..+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            333355667777788888888777665 7778888888888888888888888888875322 12557788888888888


Q ss_pred             CHHHHHHHHHHHHH
Q 018743          326 MTEAAQNLENKMIA  339 (351)
Q Consensus       326 ~~~~A~~~~~~~~~  339 (351)
                      +.++|...+++.+.
T Consensus       270 ~~~~a~~~~r~al~  283 (287)
T 3qou_A          270 TGDALASXYRRQLY  283 (287)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHH
Confidence            88888888877664

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.29  E-value=1.2e-10  Score=85.53  Aligned_cols=160  Identities=11%  Similarity=0.023  Sum_probs=84.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHhc
Q 018743          176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA-YSKA  254 (351)
Q Consensus       176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~  254 (351)
                      .....+...|++++|...++...+..+. +...+..+...+...|++++|...+++.....  |+...+..+... +...
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence            3444455555555555555554443222 34445555555555555555555555554432  232222211111 1111


Q ss_pred             CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 018743          255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAAQNL  333 (351)
Q Consensus       255 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~  333 (351)
                      +....|...+++..+..+. +...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|...
T Consensus        88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            2223356666666655544 56666666667777777777777777766543221 234566666677777777777777


Q ss_pred             HHHHHH
Q 018743          334 ENKMIA  339 (351)
Q Consensus       334 ~~~~~~  339 (351)
                      |++.+.
T Consensus       167 y~~al~  172 (176)
T 2r5s_A          167 YRRQLY  172 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.29  E-value=5.1e-11  Score=84.93  Aligned_cols=144  Identities=6%  Similarity=-0.072  Sum_probs=84.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 018743          179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM  258 (351)
Q Consensus       179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  258 (351)
                      ..+...|++++|+..+........ .+...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++...|+++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence            344455666666666665544311 123344556666667777777777777766653 445666667777777777777


Q ss_pred             HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 018743          259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL-FLTMKERHCVPDNITFATMIQAYNALGM  326 (351)
Q Consensus       259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~  326 (351)
                      +|...|++..+.++. +...+..+...+.+.|++++|.+. ++++.+.. +-++..|......+...|+
T Consensus        83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence            777777776666554 566666677777777776655544 35665541 2244555555555555553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.28  E-value=1.8e-10  Score=101.07  Aligned_cols=154  Identities=7%  Similarity=-0.048  Sum_probs=119.5

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 018743            7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK   86 (351)
Q Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   86 (351)
                      .|++++|...|++..+..+. +...+..+...+...|++++|++.+++..+..  +.+...+..+...+...|++++|..
T Consensus         2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            47899999999999887554 78899999999999999999999999998743  4567889999999999999999999


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcC---CCHHHHHHHHHHHH
Q 018743           87 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS---GNIEKMEKWYNEFN  163 (351)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~  163 (351)
                      .+++..+.. +.+...+..+..++.+.|++++|.+.+++..+..  +.+...+..+...+...   |+.++|.+.+++..
T Consensus        79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            999998876 5578899999999999999999999999998874  55677888899999999   99999999999988


Q ss_pred             hcC
Q 018743          164 LMG  166 (351)
Q Consensus       164 ~~~  166 (351)
                      +.+
T Consensus       156 ~~~  158 (568)
T 2vsy_A          156 AQG  158 (568)
T ss_dssp             HHT
T ss_pred             hcC
Confidence            765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.28  E-value=2.1e-09  Score=81.38  Aligned_cols=140  Identities=9%  Similarity=0.026  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcC----CHHHHHHHH
Q 018743           13 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH----RFDLIEKIL   88 (351)
Q Consensus        13 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~   88 (351)
                      |.+.|++..+.|   ++.++..+...+...+++++|++.|++..+ .   -+...+..+...+.. +    ++++|..+|
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~---g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAA-Q---GDGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            445555555432   455555555555556666666666666554 1   234444445544444 4    555666666


Q ss_pred             HHHHHcCCCCCHhHHHHHHHHHhh----cCChHHHHHHHHHHHhcCCCC-CCHhHHHHHHHHHhc----CCCHHHHHHHH
Q 018743           89 AEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSFSAMVESGGCH-PDIFTLNSMISAYGN----SGNIEKMEKWY  159 (351)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~  159 (351)
                      ++..+.|   +...+..|...|..    .+++++|+.+|++..+.+ .. .+..++..+...|..    .+++++|..+|
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            5555443   44445555555544    455555555555554432 00 013444445555544    44555555555


Q ss_pred             HHHHh
Q 018743          160 NEFNL  164 (351)
Q Consensus       160 ~~~~~  164 (351)
                      ++..+
T Consensus       153 ~~A~~  157 (212)
T 3rjv_A          153 KGSSS  157 (212)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.27  E-value=8.2e-10  Score=87.87  Aligned_cols=168  Identities=5%  Similarity=-0.071  Sum_probs=125.8

Q ss_pred             CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH-HH
Q 018743          133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY-NI  211 (351)
Q Consensus       133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~  211 (351)
                      +.+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++.+....  |+.... ..
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence            4455567777778888888888888888887754 4566778888888888888888888888876653  333322 22


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-CHHhHHHHHHHHHhcC
Q 018743          212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAG  290 (351)
Q Consensus       212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g  290 (351)
                      ....+...++.+.|...+++..... +.+...+..+...+...|++++|...++++.+..+.. +...+..++..+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            2333556677777888888888774 5577888888888888899999999988888775542 2667888888888889


Q ss_pred             CHHHHHHHHHHHHh
Q 018743          291 DVEKMGELFLTMKE  304 (351)
Q Consensus       291 ~~~~a~~~~~~~~~  304 (351)
                      +.++|...|++...
T Consensus       270 ~~~~a~~~~r~al~  283 (287)
T 3qou_A          270 TGDALASXYRRQLY  283 (287)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHH
Confidence            88888888877653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.27  E-value=3.4e-09  Score=80.25  Aligned_cols=176  Identities=10%  Similarity=-0.030  Sum_probs=116.2

Q ss_pred             HHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcC----ChHHHHHH
Q 018743           47 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK----KFEEMESS  122 (351)
Q Consensus        47 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~  122 (351)
                      +|++.|++..+    .-+...+..+...+...+++++|..+|++..+.|   ++..+..|...|.. +    ++++|.++
T Consensus         4 eA~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            4 EPGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             CTTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             hHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            46666777665    2356667777777777788888888888877765   55666677777776 5    77888888


Q ss_pred             HHHHHhcCCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHH
Q 018743          123 FSAMVESGGCHPDIFTLNSMISAYGN----SGNIEKMEKWYNEFNLMGVK-ADIQTLNILTKSYGR----AGMYDKMRSV  193 (351)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~  193 (351)
                      |++..+.    .+..++..+...|..    .+++++|+++|++..+.+.. .+...+..|...|..    .+++++|...
T Consensus        76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            8877654    255566677777766    67778888888777765421 125566667677766    6677777777


Q ss_pred             HHHHHHcCCCCCHHhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 018743          194 MDFMQKRFFFPTVVTYNIVIETFGKA-G-----HIEKMEEYFKKMKHRG  236 (351)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~  236 (351)
                      |++..+.+  .+...+..+...|... |     ++++|..+|++..+.|
T Consensus       152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            77766651  2333445555555432 2     6777777777776665

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.26  E-value=1.5e-10  Score=84.98  Aligned_cols=159  Identities=6%  Similarity=0.020  Sum_probs=84.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH-HHhcC
Q 018743          142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAG  220 (351)
Q Consensus       142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~  220 (351)
                      ....+...|++++|...+++..+.. +.+...+..+...+...|++++|...++......+  +...+...... +...+
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~   88 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQA   88 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhc
Confidence            3344444555555555554443322 22344444445555555555555555554433321  22222111111 11111


Q ss_pred             CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-CHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743          221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELF  299 (351)
Q Consensus       221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~  299 (351)
                      ....|...+++..+.. +.+...+..+...+...|++++|...++++.+..+.+ +...+..+...+...|+.++|...|
T Consensus        89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            2223566666666653 3356677777777777777777777777777665443 3456677777777777777777777


Q ss_pred             HHHHh
Q 018743          300 LTMKE  304 (351)
Q Consensus       300 ~~~~~  304 (351)
                      ++...
T Consensus       168 ~~al~  172 (176)
T 2r5s_A          168 RRQLY  172 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76553

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.26  E-value=2.1e-09  Score=82.25  Aligned_cols=188  Identities=11%  Similarity=0.020  Sum_probs=119.2

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---hHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA---VTY  103 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~  103 (351)
                      ++..+..+...+.+.|++++|+..|+++.+..+..|. ...+..+..++.+.|++++|...|+++.+.... +.   .++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence            4455666677777888888888888887764322221 345666777788888888888888887766422 22   234


Q ss_pred             HHHHHHHhh------------------cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 018743          104 NTIIDGYGK------------------AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM  165 (351)
Q Consensus       104 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  165 (351)
                      ..+..++..                  .|++++|...|+++++..  |.+..++......          ..+...+.  
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~--  147 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA--  147 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH--
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH--
Confidence            444444443                  567778888888877653  2233232221110          00000100  


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743          166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--VVTYNIVIETFGKAGHIEKMEEYFKKMKHRG  236 (351)
Q Consensus       166 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  236 (351)
                            .....+...+.+.|++++|...|+.+.+..+...  ...+..+..++.+.|++++|.+.++.+...+
T Consensus       148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                  1123466788889999999999999887643321  2567788899999999999999999888763

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.25  E-value=3e-10  Score=91.39  Aligned_cols=224  Identities=7%  Similarity=0.017  Sum_probs=156.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh-cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 018743           78 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME  156 (351)
Q Consensus        78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  156 (351)
                      .|++++|.+++++..+.. +.          .+.. .+++++|...|.+.                ...|...|++++|.
T Consensus         4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK   56 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence            567777888887776542 11          1232 56777777777664                45677889999999


Q ss_pred             HHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHhHHHHHHHHHhcCCHHHHH
Q 018743          157 KWYNEFNLMGV---KA--DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF---FP--TVVTYNIVIETFGKAGHIEKME  226 (351)
Q Consensus       157 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~  226 (351)
                      ..|.+......   .+  ...++..+...|...|++++|...+++......   .+  ...++..+...|.. |++++|+
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            99988754311   11  145788888999999999999999998755311   11  23567788888888 9999999


Q ss_pred             HHHHHHHHcCC---Cc--cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc----cC-HHhHHHHHHHHHhcCCHHHHH
Q 018743          227 EYFKKMKHRGM---KP--NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI----LD-TPFFNCIISAYGQAGDVEKMG  296 (351)
Q Consensus       227 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~a~  296 (351)
                      ..|++..+...   .+  ...++..+...+...|++++|...+++..+....    +. ...+..++.++...|++++|.
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999875421   11  1467888999999999999999999998764221    11 235666777788889999999


Q ss_pred             HHHHHHHhcCCCCC---HH---HHHHHHHHHHHcCCHHHHHHH
Q 018743          297 ELFLTMKERHCVPD---NI---TFATMIQAYNALGMTEAAQNL  333 (351)
Q Consensus       297 ~~~~~~~~~~~~p~---~~---~~~~l~~~~~~~g~~~~A~~~  333 (351)
                      ..|++.. .  .|+   ..   ....++.++ ..|+.+.+..+
T Consensus       216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            9999998 4  232   21   234455555 67787766663

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.21  E-value=1.8e-09  Score=86.90  Aligned_cols=228  Identities=13%  Similarity=0.073  Sum_probs=162.3

Q ss_pred             ccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHH
Q 018743           41 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK-FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM  119 (351)
Q Consensus        41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  119 (351)
                      ..|++++|.+++++..+..  +.          .+.+ .++++.|...|.+.               ...|...|++++|
T Consensus         3 ~~~~~~eA~~~~~~a~k~~--~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A   55 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYL--KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA   55 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHc--cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence            4678899999999887632  11          1223 57888888888765               4567788999999


Q ss_pred             HHHHHHHHhcC---CCC-CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC---CCC--HHHHHHHHHHHHhcCCHHHH
Q 018743          120 ESSFSAMVESG---GCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV---KAD--IQTLNILTKSYGRAGMYDKM  190 (351)
Q Consensus       120 ~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a  190 (351)
                      ...|.+..+..   +.+ .-..+|+.+...|...|++++|+..+++......   .+.  ..++..+...|.. |++++|
T Consensus        56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A  134 (307)
T 2ifu_A           56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA  134 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence            99999876542   111 1134788888999999999999999998765311   121  3567788888988 999999


Q ss_pred             HHHHHHHHHcCCCC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcc-HHHHHHHHHHHHhcCCHhHH
Q 018743          191 RSVMDFMQKRFFFP-----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GMKPN-SITYCSLVSAYSKAGLIMKV  260 (351)
Q Consensus       191 ~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a  260 (351)
                      ...+++........     ...++..+...+...|++++|+..|++....    +..+. ...+..++..+...|++++|
T Consensus       135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A  214 (307)
T 2ifu_A          135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA  214 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999876642111     1467888899999999999999999998764    21111 23566777788888999999


Q ss_pred             HHHHHHhhhcCCcc-CH---HhHHHHHHHHHhcCCHHHHHHH
Q 018743          261 DSILRQVENSDVIL-DT---PFFNCIISAYGQAGDVEKMGEL  298 (351)
Q Consensus       261 ~~~~~~~~~~~~~~-~~---~~~~~l~~~~~~~g~~~~a~~~  298 (351)
                      ...|++.. ..+.. +.   .....++.++ ..|+.+.+.++
T Consensus       215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            99999988 54321 11   2344455555 56777666553

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.19  E-value=5.2e-08  Score=77.73  Aligned_cols=168  Identities=11%  Similarity=-0.045  Sum_probs=119.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cc----HHHHH
Q 018743          176 ILTKSYGRAGMYDKMRSVMDFMQKRFF-FPTV----VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK-PN----SITYC  245 (351)
Q Consensus       176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~  245 (351)
                      ..+..+...|++++|...++....... .|+.    ..+..+...+...+++++|+..+++....... ++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            346677788888888888888776422 2221    12334566667778899999999988874222 22    33688


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHhhh----c-CCcc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHH
Q 018743          246 SLVSAYSKAGLIMKVDSILRQVEN----S-DVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKER----HCVPD-NITF  314 (351)
Q Consensus       246 ~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~  314 (351)
                      .+...|...|++++|...++++.+    . +..+ ...++..+...|.+.|++++|++.+++..+.    +..+. ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            888889999999999999888763    1 1111 2346788888999999999999999887642    22222 5678


Q ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHhccc
Q 018743          315 ATMIQAYNALGM-TEAAQNLENKMIAMKEN  343 (351)
Q Consensus       315 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~  343 (351)
                      ..+..++.+.|+ +++|.+.+++++.....
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~  269 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASFFFDI  269 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            888889999995 69999999988776543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.18  E-value=1.2e-07  Score=81.20  Aligned_cols=299  Identities=10%  Similarity=-0.030  Sum_probs=168.9

Q ss_pred             cCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCC-HHH
Q 018743            6 KCK-QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDL   83 (351)
Q Consensus         6 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~   83 (351)
                      +.| +++.|..+|+.+...  -|.              |+++.+..+|++....   .|+...|...+....+.++ .+.
T Consensus         6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~   66 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFK   66 (493)
T ss_dssp             ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----C
T ss_pred             HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHH
Confidence            456 478888888887764  333              8899999999999973   5799999998888777663 456


Q ss_pred             HHHHHHHHHHc-CC-CCCHhHHHHHHHHHh----hcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH-------------
Q 018743           84 IEKILAEMSYL-GI-ECSAVTYNTIIDGYG----KAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS-------------  144 (351)
Q Consensus        84 a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-------------  144 (351)
                      ...+|+..... |. +.+...|...+..+.    ..++.+.+..+|++.+... ...-...|.....             
T Consensus        67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~  145 (493)
T 2uy1_A           67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKI  145 (493)
T ss_dssp             THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHH
Confidence            77788877654 42 346788888887765    3467888999999998642 1111112221111             


Q ss_pred             -----------------------------------HHhcC--CC-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018743          145 -----------------------------------AYGNS--GN-----IEKMEKWYNEFNLMGVKADIQTLNILTKSYG  182 (351)
Q Consensus       145 -----------------------------------~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  182 (351)
                                                         .-...  |-     .+.+..+|+++.... +.+...|...+..+.
T Consensus       146 ~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~  224 (493)
T 2uy1_A          146 VGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLI  224 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence                                               00000  00     122344555544432 334555555566666


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------C---CccHHHHHHHHHH
Q 018743          183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG---------M---KPNSITYCSLVSA  250 (351)
Q Consensus       183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~  250 (351)
                      +.|+.+.|..++++....  +.+...+..    |......++.   ++.+.+.-         .   ......|...+..
T Consensus       225 ~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~  295 (493)
T 2uy1_A          225 GIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY  295 (493)
T ss_dssp             HTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHH
Confidence            666677777777666665  222222221    1111111111   11211110         0   0012345555555


Q ss_pred             HHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 018743          251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA-GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA  329 (351)
Q Consensus       251 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  329 (351)
                      ..+.++.+.|..+|+++ +.. ..+...|...+..-... ++.+.|..+|+...+. .+-++..+...++...+.|+.+.
T Consensus       296 ~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~  372 (493)
T 2uy1_A          296 VLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEEN  372 (493)
T ss_dssp             HHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHH
Confidence            55677788888888888 322 22444444333322223 3688888888888775 23235556667777778888888


Q ss_pred             HHHHHHHH
Q 018743          330 AQNLENKM  337 (351)
Q Consensus       330 A~~~~~~~  337 (351)
                      |..+|+++
T Consensus       373 aR~l~er~  380 (493)
T 2uy1_A          373 ARALFKRL  380 (493)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHH
Confidence            88887775

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.18  E-value=1.4e-07  Score=75.83  Aligned_cols=223  Identities=7%  Similarity=-0.037  Sum_probs=128.4

Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcC-ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcC-C-CHH
Q 018743           77 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS-G-NIE  153 (351)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~  153 (351)
                      ..+..++|+++++.+...+ |-+..+|+.--.++...| .+++++..++.++...  +.+..+|+.-...+.+. + +++
T Consensus        66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChH
Confidence            3344456666666666654 335555555555555555 3666666666666553  44555555554444444 4 566


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----
Q 018743          154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD--------KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----  221 (351)
Q Consensus       154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----  221 (351)
                      +++++++.+.+.. +.+...|+.-...+.+.|.++        ++++.++++.+..+. +...|+.....+.+.++    
T Consensus       143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence            6666666666543 345555554444444444444        667777777666544 66667666666666654    


Q ss_pred             ---HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH--------------------hHHHHHHHHhhhcC-----Cc
Q 018743          222 ---IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI--------------------MKVDSILRQVENSD-----VI  273 (351)
Q Consensus       222 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~  273 (351)
                         ++++++.+++..... +-|...|+.+-..+.+.|+.                    .........+....     -.
T Consensus       221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (349)
T 3q7a_A          221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL  299 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred             hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence               577777777777664 44666676666555555543                    22222222222221     12


Q ss_pred             cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       274 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      +++..+..++..|...|+.++|.++++.+.+.
T Consensus       300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            36667777777888888888888888887643

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.17  E-value=2.5e-09  Score=81.01  Aligned_cols=127  Identities=11%  Similarity=-0.009  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 018743          173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS  252 (351)
Q Consensus       173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  252 (351)
                      .+..+...+...|++++|...+++..    .|+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            34556667777788888888877663    4567777777788888888888888888877764 456677777778888


Q ss_pred             hcCCHhHHHHHHHHhhhcCCccCH----------------HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          253 KAGLIMKVDSILRQVENSDVILDT----------------PFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       253 ~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      ..|++++|...+++..+..+. +.                ..+..+..++...|++++|.+.|+++.+.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            888888888888877765443 22                56677777777788888888888777764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.14  E-value=9.8e-10  Score=77.92  Aligned_cols=97  Identities=13%  Similarity=-0.024  Sum_probs=56.9

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743          207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY  286 (351)
Q Consensus       207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  286 (351)
                      ..+..+...+.+.|++++|...|++..... |.+...|..+..++...|++++|...|++..+..+. ++..|..+..+|
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~  114 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence            344455555566666666666666665553 335555666666666666666666666666655544 455555566666


Q ss_pred             HhcCCHHHHHHHHHHHHhc
Q 018743          287 GQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       287 ~~~g~~~~a~~~~~~~~~~  305 (351)
                      ...|++++|+..|++..+.
T Consensus       115 ~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          115 LRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666666553

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.13  E-value=4.4e-08  Score=78.17  Aligned_cols=127  Identities=12%  Similarity=0.011  Sum_probs=63.5

Q ss_pred             HHHHhhcCChHHHHHHHHHHHhcCCCCCCHh----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-CC----HHHHHHH
Q 018743          107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIF----TLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-AD----IQTLNIL  177 (351)
Q Consensus       107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l  177 (351)
                      +..+...|++++|...+++..+.....|+..    .+..+...+...+++++|+..+++....... ++    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            5556667777777777777665432222211    2223445555566666666666666552211 11    1245555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc-----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          178 TKSYGRAGMYDKMRSVMDFMQKR-----FFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMK  233 (351)
Q Consensus       178 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  233 (351)
                      ..+|...|++++|...++++.+.     +..+ ...++..+...|...|++++|...+++..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            55566666666666655554421     0001 11234444445555555555555544443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.13  E-value=9.4e-09  Score=74.35  Aligned_cols=132  Identities=11%  Similarity=-0.039  Sum_probs=95.4

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743          207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY  286 (351)
Q Consensus       207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  286 (351)
                      ..+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            445666677777888888888888877763 446777777888888888888888888887776544 667777888888


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743          287 GQAGDVEKMGELFLTMKERHCVPDNITFAT--MIQAYNALGMTEAAQNLENKMIAMK  341 (351)
Q Consensus       287 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~  341 (351)
                      ...|++++|...|+++.+.. +.+...+..  .+..+...|++++|...+++.....
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            88888888888888887652 224444433  3334677788888888888776544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.12  E-value=7.7e-10  Score=78.53  Aligned_cols=98  Identities=11%  Similarity=0.015  Sum_probs=64.4

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743          206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA  285 (351)
Q Consensus       206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  285 (351)
                      ...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+++....+. ++..+..+..+
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~   98 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence            4445556666666777777777777766653 445666666666777777777777777776666544 55666666667


Q ss_pred             HHhcCCHHHHHHHHHHHHhc
Q 018743          286 YGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       286 ~~~~g~~~~a~~~~~~~~~~  305 (351)
                      +...|++++|.+.|++..+.
T Consensus        99 ~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            77777777777777766653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.10  E-value=2.8e-08  Score=79.31  Aligned_cols=169  Identities=11%  Similarity=-0.049  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---Ccc--HH
Q 018743          173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT-----VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM---KPN--SI  242 (351)
Q Consensus       173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~  242 (351)
                      .+...+..+...|++++|...+....+......     ...+..+...+...|++++|...+.+..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344456666777777777777776655422211     12233345556677788888888877764311   111  34


Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHhhh---cCCc-c--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-CH
Q 018743          243 TYCSLVSAYSKAGLIMKVDSILRQVEN---SDVI-L--DTPFFNCIISAYGQAGDVEKMGELFLTMKERH----CVP-DN  311 (351)
Q Consensus       243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~  311 (351)
                      +++.+...|...|++++|...++++.+   .... +  ...++..+..+|...|++++|++.+++..+..    ... -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            677778888888888888888877652   2111 1  12467777888888888888888888776431    111 15


Q ss_pred             HHHHHHHHHHHHcCCHHHH-HHHHHHHHHhc
Q 018743          312 ITFATMIQAYNALGMTEAA-QNLENKMIAMK  341 (351)
Q Consensus       312 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~  341 (351)
                      .+|..+..+|.+.|++++| ...+++++...
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            5677788888888888888 77777776543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.10  E-value=5.2e-09  Score=71.91  Aligned_cols=100  Identities=8%  Similarity=-0.054  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018743          243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN  322 (351)
Q Consensus       243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  322 (351)
                      .+......+.+.|++++|+..|++..+..+. +...|..+..++.+.|++++|+..|++.++.+ +.+...|..+..++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence            3444555555555555555555555555443 45555555555555666666666665555542 223445555555566


Q ss_pred             HcCCHHHHHHHHHHHHHhcccC
Q 018743          323 ALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       323 ~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      ..|++++|.+.|+++++.+|..
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HCCCHHHHHHHHHHHHHHCcCC
Confidence            6666666666666665555543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.09  E-value=1.4e-07  Score=75.74  Aligned_cols=224  Identities=9%  Similarity=-0.037  Sum_probs=170.3

Q ss_pred             HhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C-C
Q 018743          110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA-G-M  186 (351)
Q Consensus       110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~  186 (351)
                      ..+.+..++|++++++++...  +-+..+|+.--..+...| ++++++++++.+.... +.+..+|+.-...+.+. + +
T Consensus        64 ~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~  140 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD  140 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred             HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence            334455678999999999874  566777888777777888 5999999999999865 56777788777777776 6 8


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--
Q 018743          187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE--------KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL--  256 (351)
Q Consensus       187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--  256 (351)
                      ++++++.++.+.+...+ +...|+.-...+.+.|.++        ++++.++++.+.. +-|...|+.....+.+.+.  
T Consensus       141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~  218 (349)
T 3q7a_A          141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE  218 (349)
T ss_dssp             CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred             hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence            89999999999887554 7777777666666656555        8999999999886 5588889888888888776  


Q ss_pred             -----HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC-----
Q 018743          257 -----IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV--------------------EKMGELFLTMKERH-----  306 (351)
Q Consensus       257 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----  306 (351)
                           ++++++.++++....+. |...|+.+-..+.+.|+.                    ....+....+...+     
T Consensus       219 ~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (349)
T 3q7a_A          219 TSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT  297 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred             cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence                 68899999999988877 888898877777776654                    23333333333221     


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743          307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIA  339 (351)
Q Consensus       307 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  339 (351)
                      -.+++..+..++..|...|+.++|.++++.+.+
T Consensus       298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            135677888999999999999999999999863

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.08  E-value=4.5e-09  Score=78.88  Aligned_cols=84  Identities=12%  Similarity=0.028  Sum_probs=34.0

Q ss_pred             cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHhcCCH
Q 018743          148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR----FF-FPTVVTYNIVIETFGKAGHI  222 (351)
Q Consensus       148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~  222 (351)
                      ..|++++|.+.++.+.. ........+..+...+...|++++|...+++....    +. ......+..+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            34555555553333322 11123344444555555555555555555444331    00 01123334444444444444


Q ss_pred             HHHHHHHHHH
Q 018743          223 EKMEEYFKKM  232 (351)
Q Consensus       223 ~~a~~~~~~~  232 (351)
                      ++|...+.+.
T Consensus        83 ~~A~~~~~~a   92 (203)
T 3gw4_A           83 DAARRCFLEE   92 (203)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.07  E-value=3.1e-08  Score=74.96  Aligned_cols=131  Identities=8%  Similarity=-0.049  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 018743          137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF  216 (351)
Q Consensus       137 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  216 (351)
                      ..+..+...+...|++++|...+++..    .|+...+..+...+...|++++|...++....... .+...+..+..++
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~   81 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence            345667788889999999999998873    56888999999999999999999999999887653 3678888999999


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCcc----------------HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743          217 GKAGHIEKMEEYFKKMKHRGMKPN----------------SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI  273 (351)
Q Consensus       217 ~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  273 (351)
                      ...|++++|...+++..+.. +.+                ...+..+..++...|++++|...++...+..+.
T Consensus        82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            99999999999999998864 222                267888999999999999999999999887654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.06  E-value=1.4e-09  Score=86.14  Aligned_cols=96  Identities=8%  Similarity=-0.014  Sum_probs=48.5

Q ss_pred             HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK  179 (351)
Q Consensus       100 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  179 (351)
                      ...+..+...+...|++++|...|++.++..  +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3444555555555555555555555555442  3344455555555555555555555555554432 233444444445


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 018743          180 SYGRAGMYDKMRSVMDFMQ  198 (351)
Q Consensus       180 ~~~~~~~~~~a~~~~~~~~  198 (351)
                      ++...|++++|...|+...
T Consensus        81 ~~~~~g~~~~A~~~~~~al   99 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAY   99 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            5555555555555554443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.06  E-value=3.8e-09  Score=77.50  Aligned_cols=121  Identities=8%  Similarity=0.022  Sum_probs=91.3

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCH--h
Q 018743          182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA-YSKAGLI--M  258 (351)
Q Consensus       182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~  258 (351)
                      ...|++++|...++......+ .+...|..+...+...|++++|...|++..+.. +.+...+..+... +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            456788888888888776643 367778888888888888888888888887764 4466777777777 6778887  8


Q ss_pred             HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      +|...++.+.+..+. +...+..+...+...|++++|...|+++.+.
T Consensus        99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            888888888877654 6777788888888888888888888888875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.05  E-value=6.6e-09  Score=76.21  Aligned_cols=123  Identities=6%  Similarity=0.053  Sum_probs=87.1

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHH-HHhcCCH-
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRF-   81 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-   81 (351)
                      +...|++++|...++...+..+. +..+|..+...+...|++++|+..|++..+..  +.+...+..+..+ +...|++ 
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence            55677888888888887776544 67788888888888888888888888877643  3355666667766 6677777 


Q ss_pred             -HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 018743           82 -DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG  130 (351)
Q Consensus        82 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  130 (351)
                       ++|...++++.+.. +.+...+..+..++...|++++|...|+++.+..
T Consensus        97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence             88888888877765 4456777777778888888888888888877653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.05  E-value=4.6e-09  Score=83.23  Aligned_cols=99  Identities=7%  Similarity=-0.114  Sum_probs=76.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 018743           64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI  143 (351)
Q Consensus        64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  143 (351)
                      +...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+..  +.+...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence            45667777777888888888888888887764 4477778888888888888888888888887653  45666777788


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhc
Q 018743          144 SAYGNSGNIEKMEKWYNEFNLM  165 (351)
Q Consensus       144 ~~~~~~~~~~~a~~~~~~~~~~  165 (351)
                      .++...|++++|...|++..+.
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            8888888888888888877653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.05  E-value=1.4e-08  Score=69.78  Aligned_cols=97  Identities=11%  Similarity=0.043  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 018743           30 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG  109 (351)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  109 (351)
                      ..+......+.+.|++++|++.|++..+..  +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~   90 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence            345555555556666666666665555432  3344555555555555566666666555555544 3345555555555


Q ss_pred             HhhcCChHHHHHHHHHHHhc
Q 018743          110 YGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus       110 ~~~~~~~~~a~~~~~~~~~~  129 (351)
                      +...|++++|.+.|++.++.
T Consensus        91 ~~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           91 LVAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH
Confidence            55555555665555555554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.04  E-value=2.6e-09  Score=75.75  Aligned_cols=110  Identities=12%  Similarity=0.031  Sum_probs=73.7

Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743           16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG   95 (351)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   95 (351)
                      .|+.+.+..+. +...+..+...+.+.|++++|+..|+......  +.+...|..+..++...|++++|...|++.....
T Consensus         9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34444444322 45566667777777777777777777776532  3456667777777777777777777777777664


Q ss_pred             CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743           96 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                       |.+...+..+..+|...|++++|...|++..+.
T Consensus        86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             445666777777777777777777777777665

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.03  E-value=1.7e-07  Score=74.78  Aligned_cols=166  Identities=10%  Similarity=0.001  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCH----hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC---CC--H
Q 018743          101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI----FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK---AD--I  171 (351)
Q Consensus       101 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~  171 (351)
                      ..+...+..+...|++++|.+.+.+..+.....++.    ..+..+...+...|++++|+..+++.......   +.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            344455666677777777777777766543111111    11233444555666677776666665542111   11  2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCC-C--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCc-c
Q 018743          172 QTLNILTKSYGRAGMYDKMRSVMDFMQK---RFFF-P--TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG----MKP-N  240 (351)
Q Consensus       172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~  240 (351)
                      .+++.+...|...|++++|...+++..+   .... +  ...++..+...|...|++++|...+++..+..    ... -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            3555556666666666666666655542   1110 0  11345555555555566666655555544321    000 1


Q ss_pred             HHHHHHHHHHHHhcCCHhHH-HHHHHH
Q 018743          241 SITYCSLVSAYSKAGLIMKV-DSILRQ  266 (351)
Q Consensus       241 ~~~~~~l~~~~~~~g~~~~a-~~~~~~  266 (351)
                      ..++..+...+...|++++| ...+++
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            33444555555555555555 444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.03  E-value=7.3e-09  Score=77.70  Aligned_cols=159  Identities=8%  Similarity=-0.004  Sum_probs=94.9

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhcc---CCCC-ccHHHHHHHHHHHHhcC
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV---SDCK-PDVYTYSILIKSCTKFH   79 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~~~~~~~~l~~~~~~~~   79 (351)
                      +...|++++|.++++.+.. .+.....++..+...+...|++++|+..+++....   .+.. ....++..+...+...|
T Consensus         2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            3467888888885555543 22335677788888888888888888888776652   1111 22345666777777788


Q ss_pred             CHHHHHHHHHHHHHc----CCC--CCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHhcC
Q 018743           80 RFDLIEKILAEMSYL----GIE--CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNS  149 (351)
Q Consensus        80 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~  149 (351)
                      ++++|...+++....    +..  ....++..+...+...|++++|...+++..+......+    ..++..+...+...
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  160 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE  160 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence            888887777776543    101  12345666677777777777777777776532100111    12345556666667


Q ss_pred             CCHHHHHHHHHHHH
Q 018743          150 GNIEKMEKWYNEFN  163 (351)
Q Consensus       150 ~~~~~a~~~~~~~~  163 (351)
                      |++++|.+.+++..
T Consensus       161 g~~~~A~~~~~~al  174 (203)
T 3gw4_A          161 KNLLEAQQHWLRAR  174 (203)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            77777766666543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.03  E-value=4.4e-08  Score=70.74  Aligned_cols=128  Identities=9%  Similarity=-0.100  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 018743          173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS  252 (351)
Q Consensus       173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  252 (351)
                      .+..+...+...|++++|...++........ +...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            4455566666677777777777766655332 56666667777777777777777777777653 445667777777777


Q ss_pred             hcCCHhHHHHHHHHhhhcCCccCHHhHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 018743          253 KAGLIMKVDSILRQVENSDVILDTPFFNCI--ISAYGQAGDVEKMGELFLTMK  303 (351)
Q Consensus       253 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~  303 (351)
                      ..|++++|...++++.+..+. +...+..+  +..+...|++++|++.+....
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            777777777777777766543 44444333  333666777777777777654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.02  E-value=3.3e-08  Score=76.78  Aligned_cols=29  Identities=3%  Similarity=-0.130  Sum_probs=17.9

Q ss_pred             hcCChHHHHHHHHHHHhcCCCCCCHhHHHHH
Q 018743          112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSM  142 (351)
Q Consensus       112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  142 (351)
                      ..++...|.+.|.++.+..  +.....|..+
T Consensus        18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~   46 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD--ESACDAWIGR   46 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhC--hhhhHHHHhH
Confidence            4667777777777776653  4444556555

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.02  E-value=2.1e-08  Score=77.89  Aligned_cols=186  Identities=9%  Similarity=-0.016  Sum_probs=78.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHhccCChHHHHHHHHHhhccCCCCcc---------------
Q 018743            7 CKQPEQASLLFEVMLSDGLKPSVDVYTAL-------VSAYGQSGLLDEAFSTINDMKSVSDCKPD---------------   64 (351)
Q Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------   64 (351)
                      .++.+.|.+.|.++.+..+. ....|..+       ...+...++..+++..+..-...   .|+               
T Consensus        19 ~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l---~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI---SMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC---CGGGGCCEEECCTTTCCC
T ss_pred             CCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC---ChhhhhhhhccCCccccc
Confidence            45666666666666665544 55556555       33444444444444433333321   111               


Q ss_pred             -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC--
Q 018743           65 -------VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD--  135 (351)
Q Consensus        65 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--  135 (351)
                             ...+......+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+......  .|.  
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~  170 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLA  170 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccH
Confidence                   1122223334444555555555555444332  211133333344445555555555554332210  110  


Q ss_pred             HhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743          136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD--IQTLNILTKSYGRAGMYDKMRSVMDFMQKR  200 (351)
Q Consensus       136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  200 (351)
                      ...+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            12334444444555555555555554442221121  223333444444444444444444444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.01  E-value=2.5e-08  Score=70.65  Aligned_cols=101  Identities=12%  Similarity=0.073  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018743          241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA  320 (351)
Q Consensus       241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  320 (351)
                      ...+..+...+.+.|++++|...|+++.+.++. +...|..+..++...|++++|+..|+++.+.. +.++..|..+..+
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~  113 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence            344555555555666666666666666555544 55555566666666666666666666665542 2234555555666


Q ss_pred             HHHcCCHHHHHHHHHHHHHhccc
Q 018743          321 YNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       321 ~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      |...|++++|...|+++++..|+
T Consensus       114 ~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Confidence            66666666666666666655543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.01  E-value=4.6e-08  Score=66.73  Aligned_cols=114  Identities=17%  Similarity=0.163  Sum_probs=64.1

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743          206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA  285 (351)
Q Consensus       206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  285 (351)
                      ...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...+..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence            3445555555666666666666666665543 334555566666666666666666666666554433 45555666666


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018743          286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN  322 (351)
Q Consensus       286 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  322 (351)
                      +...|++++|...++++.+.. +.+...+..+...+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            666666666666666665542 223344444444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.00  E-value=1.1e-08  Score=72.02  Aligned_cols=97  Identities=12%  Similarity=0.048  Sum_probs=64.2

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743          207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY  286 (351)
Q Consensus       207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  286 (351)
                      ..+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|++..+.++. ++..+..+..++
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence            344455566666777777777777766653 445666666777777777777777777776666554 555666666777


Q ss_pred             HhcCCHHHHHHHHHHHHhc
Q 018743          287 GQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       287 ~~~g~~~~a~~~~~~~~~~  305 (351)
                      ...|++++|.+.|++..+.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            7777777777777766653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.99  E-value=1.9e-06  Score=68.88  Aligned_cols=232  Identities=9%  Similarity=0.013  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC----------hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCC-
Q 018743           82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK----------FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG-  150 (351)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  150 (351)
                      ++|+.+++.+...+ |-+..+|+.--.++...+.          +++++.+++.+....  +.+..+|+.-.-.+.+.+ 
T Consensus        47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~  123 (331)
T 3dss_A           47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPE  123 (331)
T ss_dssp             HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCc
Confidence            35667776666654 3344455543333332222          455555666555542  445555555444444444 


Q ss_pred             -CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 018743          151 -NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY  228 (351)
Q Consensus       151 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  228 (351)
                       ++++++.+++.+.+.. +.|...|+.-...+...|. ++++++.++.+.+..+. +...|+.....+...+....+-  
T Consensus       124 ~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~--  199 (331)
T 3dss_A          124 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG--  199 (331)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-----
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccc--
Confidence             2555566665555544 3444555544444445554 35555555555554333 4444544443333321000000  


Q ss_pred             HHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc-----------CCHHHHHH
Q 018743          229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA-----------GDVEKMGE  297 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~  297 (351)
                           ..+ .             ...+.++++++.+.......+. |...|+-+-..+.+.           +.++++++
T Consensus       200 -----~~~-~-------------~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~  259 (331)
T 3dss_A          200 -----PQG-R-------------LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE  259 (331)
T ss_dssp             ---------C-------------CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred             -----ccc-c-------------cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence                 000 0             0002244455555555544444 444444333333322           34667777


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHhccc
Q 018743          298 LFLTMKERHCVPDNITFATMIQA-----YNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       298 ~~~~~~~~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      .++++.+.  .||. .|..+..+     ....|..+++...+.++++.+|.
T Consensus       260 ~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~  307 (331)
T 3dss_A          260 SCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  307 (331)
T ss_dssp             HHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence            77777764  4443 23222111     12356677778888888777765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.99  E-value=5.1e-08  Score=66.52  Aligned_cols=94  Identities=16%  Similarity=0.166  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743           31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY  110 (351)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (351)
                      .+..+...+...|++++|++.++++.+..  +.+..++..+...+...|++++|..+++++.+.. +.+..++..+..++
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            34444444444444444444444443321  1223333333444444444444444444443332 22333333344444


Q ss_pred             hhcCChHHHHHHHHHHH
Q 018743          111 GKAKKFEEMESSFSAMV  127 (351)
Q Consensus       111 ~~~~~~~~a~~~~~~~~  127 (351)
                      ...|++++|...++++.
T Consensus        88 ~~~~~~~~A~~~~~~~~  104 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKAL  104 (125)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHH
Confidence            44444444444444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.99  E-value=4.2e-08  Score=67.55  Aligned_cols=118  Identities=13%  Similarity=0.041  Sum_probs=74.7

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743          206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA  285 (351)
Q Consensus       206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  285 (351)
                      ...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++...+..+. +...+..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence            4455556666666677777777776666553 335566666666667777777777777766665443 45666666677


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 018743          286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM  326 (351)
Q Consensus       286 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  326 (351)
                      +...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence            777777777777777766642 2245556666666666554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.98  E-value=3.7e-08  Score=68.14  Aligned_cols=118  Identities=8%  Similarity=-0.048  Sum_probs=63.9

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743          205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS  284 (351)
Q Consensus       205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  284 (351)
                      +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence            34445555555556666666666666655542 334555555556666666666666666665554433 4555555666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 018743          285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG  325 (351)
Q Consensus       285 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  325 (351)
                      ++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence            6666666666666666655431 112334444444444433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.97  E-value=4.4e-08  Score=67.77  Aligned_cols=97  Identities=15%  Similarity=0.088  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743           29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID  108 (351)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (351)
                      ...+..+...+...|++++|+..|++..+..  +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            3344444444444444444444444444321  2233334444444444444444444444444332 223334444444


Q ss_pred             HHhhcCChHHHHHHHHHHHh
Q 018743          109 GYGKAKKFEEMESSFSAMVE  128 (351)
Q Consensus       109 ~~~~~~~~~~a~~~~~~~~~  128 (351)
                      ++...|++++|.+.|++..+
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            44444444444444444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.96  E-value=3.4e-08  Score=68.06  Aligned_cols=93  Identities=11%  Similarity=0.046  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743           68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG  147 (351)
Q Consensus        68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  147 (351)
                      +..+...+...|+++.|...+++..... +.+...+..+..++...|++++|...+++..+..  +.+...+..+...+.
T Consensus        15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHHH
Confidence            3333333444444444444444443332 2233334444444444444444444444443331  222333334444444


Q ss_pred             cCCCHHHHHHHHHHHH
Q 018743          148 NSGNIEKMEKWYNEFN  163 (351)
Q Consensus       148 ~~~~~~~a~~~~~~~~  163 (351)
                      ..|++++|...+++..
T Consensus        92 ~~~~~~~A~~~~~~~~  107 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKAL  107 (131)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHH
Confidence            4444444444444433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.95  E-value=5.3e-08  Score=79.24  Aligned_cols=94  Identities=11%  Similarity=-0.063  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743          242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY  321 (351)
Q Consensus       242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  321 (351)
                      ..+..+..++.+.|++++|...++++.+..+. +...+..+..++...|++++|+..|+++.+.. +.+...+..+..++
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~  274 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ  274 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            45555555556666666666666665555443 45555555666666666666666666655541 22344555555555


Q ss_pred             HHcCCHHHH-HHHHHHH
Q 018743          322 NALGMTEAA-QNLENKM  337 (351)
Q Consensus       322 ~~~g~~~~A-~~~~~~~  337 (351)
                      ...|+.++| ...+++|
T Consensus       275 ~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          275 QRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            555655555 3344444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.95  E-value=3.6e-08  Score=71.21  Aligned_cols=99  Identities=13%  Similarity=-0.013  Sum_probs=83.3

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743          205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS  284 (351)
Q Consensus       205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  284 (351)
                      +...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..+..+. +...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            45667778888888999999999999988874 457788888888899999999999999988887765 6788888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhc
Q 018743          285 AYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       285 ~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      ++...|++++|.+.|++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            999999999999999988865

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.93  E-value=4.9e-08  Score=67.02  Aligned_cols=96  Identities=8%  Similarity=-0.041  Sum_probs=54.1

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743          207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY  286 (351)
Q Consensus       207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  286 (351)
                      ..+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+..+. +...+..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            344455555556666666666666655543 334555555555566666666666666655555443 455555555555


Q ss_pred             HhcCCHHHHHHHHHHHHh
Q 018743          287 GQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       287 ~~~g~~~~a~~~~~~~~~  304 (351)
                      ...|++++|...|++..+
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            566666666666655554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.92  E-value=8.2e-08  Score=78.11  Aligned_cols=130  Identities=8%  Similarity=-0.066  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 018743          172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--------------VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM  237 (351)
Q Consensus       172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  237 (351)
                      ..+..+...+.+.|++++|...|++.........              ...|..+..++.+.|++++|+..+++.++.. 
T Consensus       148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-  226 (336)
T 1p5q_A          148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-  226 (336)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            3444455555555555555555555554432211              4677788888888888888888888888774 


Q ss_pred             CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 018743          238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM-GELFLTMK  303 (351)
Q Consensus       238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~  303 (351)
                      +.+...+..+..++...|++++|...|+++.+..+. +...+..+..++...|+.++| ..+|+.|.
T Consensus       227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557778888888888888999998888888887665 677888888888888888887 44566554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.91  E-value=7.8e-08  Score=67.00  Aligned_cols=98  Identities=6%  Similarity=-0.090  Sum_probs=60.6

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743          205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS  284 (351)
Q Consensus       205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  284 (351)
                      +...+..+...+...|++++|...|.+..... +.+...+..+..++...|++++|...++...+..+. +...+..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence            45556666666666666666666666666553 334556666666666666666666666666655444 4556666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHh
Q 018743          285 AYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       285 ~~~~~g~~~~a~~~~~~~~~  304 (351)
                      ++...|++++|...|+++.+
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            66666666666666666554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.90  E-value=7.3e-06  Score=65.57  Aligned_cols=244  Identities=7%  Similarity=-0.036  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC----------hHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcC--
Q 018743           12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL----------LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH--   79 (351)
Q Consensus        12 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--   79 (351)
                      +|+.+++.++..++. +..+|+.--..+...+.          +++++.+++.+....  +-+..+|+.-...+...+  
T Consensus        48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~  124 (331)
T 3dss_A           48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEP  124 (331)
T ss_dssp             HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcc
Confidence            556666666655444 44555544433333222          345555555555422  334445554444444444  


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC-hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHH
Q 018743           80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW  158 (351)
Q Consensus        80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  158 (351)
                      ++++++.+++.+.+.. +.|..+|+.-.-++...|. ++++++.++++++..  +.|..+|+.....+.+.+....+   
T Consensus       125 ~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~---  198 (331)
T 3dss_A          125 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDS---  198 (331)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC-----
T ss_pred             cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhcccc---
Confidence            2555555555555554 3355555544444444454 355555555555542  34444444443333222000000   


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----------CCHHHHHH
Q 018743          159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----------GHIEKMEE  227 (351)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~  227 (351)
                                ++        ..-...+.++++++.+.......+. |...|+-+-..+.+.           +.++++++
T Consensus       199 ----------~~--------~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~  259 (331)
T 3dss_A          199 ----------GP--------QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE  259 (331)
T ss_dssp             ----------------------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred             ----------cc--------ccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence                      00        0000002244455555554444322 444444333333222           34567777


Q ss_pred             HHHHHHHcCCCccH-HHHHHHH---HHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743          228 YFKKMKHRGMKPNS-ITYCSLV---SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY  286 (351)
Q Consensus       228 ~~~~~~~~~~~~~~-~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  286 (351)
                      .+.++.+.  .|+. -.+..++   ......|..+++...+.++.+.++. ...-|.-+...+
T Consensus       260 ~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r~~~y~d~~~~~  319 (331)
T 3dss_A          260 SCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-GHHHHHHHHHHH
T ss_pred             HHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-hhhHHHHHHHHH
Confidence            77777665  3332 1111111   1122346666777777777766544 444455444433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.89  E-value=2.5e-08  Score=66.67  Aligned_cols=103  Identities=11%  Similarity=0.006  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 018743          241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP--DNITFATMI  318 (351)
Q Consensus       241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~  318 (351)
                      ...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|.+.+++..+.. +.  +...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~   83 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA   83 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence            345556666667777777777777776665544 56667777777777777777777777777642 22  466677777


Q ss_pred             HHHHHc-CCHHHHHHHHHHHHHhcccCC
Q 018743          319 QAYNAL-GMTEAAQNLENKMIAMKENSG  345 (351)
Q Consensus       319 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~  345 (351)
                      .++... |++++|.+.+++++...|.++
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            777777 888888888887777766543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.88  E-value=4.1e-08  Score=67.52  Aligned_cols=96  Identities=11%  Similarity=0.029  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc--C----HHhHHH
Q 018743          208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL--D----TPFFNC  281 (351)
Q Consensus       208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~~  281 (351)
                      .+..+...+.+.|++++|+..|++.++.. |.+...|..+..+|...|++++|+..+++..+..+..  +    ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            34445555555555555555555555543 3344555555555555555555555555554432211  0    123444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh
Q 018743          282 IISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       282 l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      +..++...|++++|++.|++...
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            44455555555555555555544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.87  E-value=9.8e-08  Score=64.33  Aligned_cols=98  Identities=12%  Similarity=0.006  Sum_probs=63.9

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743          206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA  285 (351)
Q Consensus       206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  285 (351)
                      ...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence            4455566666667777777777777766653 345566666666666777777777777766665443 55566666666


Q ss_pred             HHhcCCHHHHHHHHHHHHhc
Q 018743          286 YGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       286 ~~~~g~~~~a~~~~~~~~~~  305 (351)
                      +...|++++|.+.+++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHHHHHHc
Confidence            77777777777777766654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.87  E-value=4e-08  Score=66.89  Aligned_cols=99  Identities=6%  Similarity=-0.129  Sum_probs=66.1

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA  323 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  323 (351)
                      +..+...+.+.|++++|...++++.+..+. +...+..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            444556666777777777777777766554 66677777777777777777777777777652 2245666777777777


Q ss_pred             cCCHHHHHHHHHHHHHhcccC
Q 018743          324 LGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       324 ~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      .|++++|...++++++..|..
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-----
T ss_pred             cCCHHHHHHHHHHHHHhCcCC
Confidence            777777777777777766654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.86  E-value=8e-09  Score=77.31  Aligned_cols=129  Identities=13%  Similarity=-0.062  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----------------HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 018743          208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN----------------SITYCSLVSAYSKAGLIMKVDSILRQVENSD  271 (351)
Q Consensus       208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  271 (351)
                      .+..+...+...|++++|...|.+..... +.+                ...+..+..++...|++++|...++...+..
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            34444455555555555555555555431 111                2566667777777777777777777777665


Q ss_pred             CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 018743          272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ-NLENKMIA  339 (351)
Q Consensus       272 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~  339 (351)
                      +. +...+..+..++...|++++|.+.|++..+.. +.+...+..+..++...++.+++. ..+..+..
T Consensus       119 p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          119 KN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             cc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44 56677777777777777777777777777652 234556666666666666666555 44444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.86  E-value=2.8e-08  Score=69.88  Aligned_cols=99  Identities=11%  Similarity=-0.012  Sum_probs=62.9

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII  107 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  107 (351)
                      +...+..+...+.+.|++++|+..|+......  +.+...|..+..++...|++++|...|++..... |.+...+..+.
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg   93 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA   93 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence            34455556666666777777777776666532  3355566666666666777777777777666654 44556666666


Q ss_pred             HHHhhcCChHHHHHHHHHHHhc
Q 018743          108 DGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus       108 ~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                      .++...|++++|...|++..+.
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            6666777777777777666554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.85  E-value=2.3e-07  Score=63.56  Aligned_cols=98  Identities=7%  Similarity=-0.156  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743          242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY  321 (351)
Q Consensus       242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  321 (351)
                      ..+..+...+...|++++|...|++..+..+. +...+..+..++.+.|++++|+..+++..+.. +.+...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            34555555566666666666666666655443 55566666666666666666666666666542 22355555666666


Q ss_pred             HHcCCHHHHHHHHHHHHHhc
Q 018743          322 NALGMTEAAQNLENKMIAMK  341 (351)
Q Consensus       322 ~~~g~~~~A~~~~~~~~~~~  341 (351)
                      ...|++++|...++++++..
T Consensus        83 ~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhC
Confidence            66666666666666666655

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.84  E-value=1.4e-08  Score=76.04  Aligned_cols=96  Identities=14%  Similarity=0.023  Sum_probs=67.0

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743          207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY  286 (351)
Q Consensus       207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  286 (351)
                      ..+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+..+. +...+..+..++
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~  166 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence            567777788888888888888888888764 556777888888888888888888888888877654 667777777777


Q ss_pred             HhcCCHHHHH-HHHHHHHh
Q 018743          287 GQAGDVEKMG-ELFLTMKE  304 (351)
Q Consensus       287 ~~~g~~~~a~-~~~~~~~~  304 (351)
                      ...++..++. ..+..+..
T Consensus       167 ~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          167 NKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            7777666665 44454443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.83  E-value=4.4e-07  Score=61.02  Aligned_cols=95  Identities=12%  Similarity=0.050  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743           31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY  110 (351)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (351)
                      .+..+...+...|++++|...|+......  +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   82 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            34444444444444444444444444321  2233334444444444444444444444444332 22333444444444


Q ss_pred             hhcCChHHHHHHHHHHHh
Q 018743          111 GKAKKFEEMESSFSAMVE  128 (351)
Q Consensus       111 ~~~~~~~~a~~~~~~~~~  128 (351)
                      ...|++++|.+.+++..+
T Consensus        83 ~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            444444444444444433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.81  E-value=3.2e-07  Score=62.97  Aligned_cols=101  Identities=13%  Similarity=0.032  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCC----HHHHH
Q 018743          242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPD----NITFA  315 (351)
Q Consensus       242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~----~~~~~  315 (351)
                      ..+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|++.+++.++..  ..++    ..+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            34556666777777777777777777766554 56667777777777777777777777766431  1111    13556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          316 TMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       316 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      .+..++...|++++|++.|++.++..++
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            6666777777777777777777665544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.80  E-value=1.5e-07  Score=67.98  Aligned_cols=100  Identities=6%  Similarity=-0.033  Sum_probs=77.8

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII  107 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  107 (351)
                      +...+..+...+.+.|++++|++.|++..+..  +.+...|..+..++...|++++|+..+++..+.. +.+...|..+.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg   86 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG   86 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            46677777888888888888888888877643  3466777788888888888888888888887775 44677788888


Q ss_pred             HHHhhcCChHHHHHHHHHHHhcC
Q 018743          108 DGYGKAKKFEEMESSFSAMVESG  130 (351)
Q Consensus       108 ~~~~~~~~~~~a~~~~~~~~~~~  130 (351)
                      .++...|++++|...|++.++..
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhC
Confidence            88888888888888888887764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.78  E-value=9e-07  Score=61.47  Aligned_cols=96  Identities=10%  Similarity=-0.072  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 018743          171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA  250 (351)
Q Consensus       171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  250 (351)
                      ...+..+...+...|++++|...|.......+. +...|..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   86 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   86 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence            344444444445555555555555544443222 34444444444445555555555555444432 2234444444444


Q ss_pred             HHhcCCHhHHHHHHHHhh
Q 018743          251 YSKAGLIMKVDSILRQVE  268 (351)
Q Consensus       251 ~~~~g~~~~a~~~~~~~~  268 (351)
                      +...|++++|...+++..
T Consensus        87 ~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            555555555555554444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.77  E-value=2.4e-07  Score=63.66  Aligned_cols=111  Identities=11%  Similarity=0.015  Sum_probs=67.7

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc--cC----HHhHH
Q 018743          207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI--LD----TPFFN  280 (351)
Q Consensus       207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~  280 (351)
                      ..+..+...+...|++++|...+.+..... +.+...+..+...+...|++++|...++++.+..+.  ++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            345555666666666777776666666553 445566666666666677777777776666554322  11    45566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018743          281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA  320 (351)
Q Consensus       281 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  320 (351)
                      .+..++...|++++|.+.|+++.+.  .|+......+...
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~  121 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence            6677777777777777777777664  3455444444433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=9.9e-07  Score=62.09  Aligned_cols=110  Identities=8%  Similarity=-0.010  Sum_probs=75.2

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD----VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY  103 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  103 (351)
                      +...+..+...+...|++++|++.|++..+.   .|+    ...+..+..++...|++++|...+++..+.. +.+...+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  102 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL  102 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence            5667777777777888888888888877763   344    4566667777777777777777777776664 3456677


Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 018743          104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI  143 (351)
Q Consensus       104 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  143 (351)
                      ..+..++...|++++|...|++..+..  +.+...+..+.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~  140 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEALR  140 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHH
Confidence            777777777777777777777776652  33344444333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=4.6e-07  Score=63.86  Aligned_cols=98  Identities=9%  Similarity=-0.066  Sum_probs=72.2

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHH
Q 018743          205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN----SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN  280 (351)
Q Consensus       205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  280 (351)
                      +...+..+...+...|++++|...|++..+.  .|+    ...+..+...+...|++++|...+++..+..+. +...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence            5566777777777888888888888887765  343    566777777777788888888888777766544 566777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          281 CIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       281 ~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      .+..++...|++++|...|++..+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            7777777888888888888877764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.72  E-value=3.6e-07  Score=60.86  Aligned_cols=94  Identities=9%  Similarity=-0.031  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC--CHhHHHHHHHH
Q 018743           68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP--DIFTLNSMISA  145 (351)
Q Consensus        68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~  145 (351)
                      +..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+..  +.  +...+..+..+
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKADA   85 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHHH
Confidence            3444444444555555555555444443 2234444444444444555555555555444432  22  33444444444


Q ss_pred             HhcC-CCHHHHHHHHHHHHh
Q 018743          146 YGNS-GNIEKMEKWYNEFNL  164 (351)
Q Consensus       146 ~~~~-~~~~~a~~~~~~~~~  164 (351)
                      +... |++++|.+.++....
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHhCCHHHHHHHHHHHhh
Confidence            4444 455555554444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.72  E-value=3.3e-06  Score=71.30  Aligned_cols=198  Identities=9%  Similarity=-0.010  Sum_probs=109.2

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhcCCCCCCH---------------hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-C
Q 018743          106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDI---------------FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-A  169 (351)
Q Consensus       106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~  169 (351)
                      -...+.+.|++++|++.|..+.+......+.               ..+..+...|...|++++|.+.+..+...--. +
T Consensus        10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            3456777888888888888887764222221               12556667777777777777777665432101 1


Q ss_pred             CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-
Q 018743          170 DI----QTLNILTKSYGRAGMYDKMRSVMDFMQKR----FFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR--GM-  237 (351)
Q Consensus       170 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-  237 (351)
                      +.    .+.+.+...+...|+++.+..++......    +..+ -..++..+...+...|++++|..+++++...  +. 
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            11    12222333334456677777766665331    1111 2345556666667777777777776665532  11 


Q ss_pred             -Cc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC--C-cc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          238 -KP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSD--V-IL---DTPFFNCIISAYGQAGDVEKMGELFLTMK  303 (351)
Q Consensus       238 -~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  303 (351)
                       .+ ...++..++..|...|++++|..+++......  . .|   -...+..+...+...|++++|...|.+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence             11 23455666666666777777776666654321  1 11   12234445555566666666666666554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.72  E-value=5.2e-07  Score=61.99  Aligned_cols=94  Identities=9%  Similarity=-0.040  Sum_probs=65.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccC---HHhHHHHH
Q 018743          210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS---ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD---TPFFNCII  283 (351)
Q Consensus       210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~  283 (351)
                      ..+...+...|++++|...|+.+.+.. +.+.   ..+..+..++...|++++|...++.+.+..+. +   ...+..+.
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la   83 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence            345566777788888888888777653 2223   46667777777788888888888777766543 3   45566777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhc
Q 018743          284 SAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       284 ~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      .++...|++++|...|+++.+.
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            7777778888888888777765

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.72  E-value=2.3e-07  Score=63.78  Aligned_cols=102  Identities=17%  Similarity=0.090  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----HHHH
Q 018743          241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC--VPD----NITF  314 (351)
Q Consensus       241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~  314 (351)
                      ...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...++++.+...  .++    ..++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            456788888999999999999999999887654 778899999999999999999999999886521  122    6788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          315 ATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       315 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      ..+..++...|++++|...++++++..+.
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            88999999999999999999999998763

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.70  E-value=1.8e-06  Score=72.95  Aligned_cols=197  Identities=6%  Similarity=-0.132  Sum_probs=143.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCH----------------hHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC
Q 018743           72 IKSCTKFHRFDLIEKILAEMSYLGIECSA----------------VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD  135 (351)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  135 (351)
                      .+.+...|++++|.+.|..+.+.......                ..+..+...|...|++++|.+.+..+.+..+..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            45577899999999999999887532211                24678899999999999999999988764322222


Q ss_pred             Hh----HHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C
Q 018743          136 IF----TLNSMISAYGNSGNIEKMEKWYNEFNL----MGVKAD-IQTLNILTKSYGRAGMYDKMRSVMDFMQKRF----F  202 (351)
Q Consensus       136 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~  202 (351)
                      ..    +.+.+-..+...|+++.+..++.....    .+..+. ..++..+...+...|++++|..++..+...-    .
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            21    233344455667899999999988754    222232 4577889999999999999999999875531    1


Q ss_pred             C-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcc--HHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743          203 F-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVE  268 (351)
Q Consensus       203 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~  268 (351)
                      . .....+..++..|...|++++|..++++....    +.++.  ...+..+...+...|++++|...|.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            1 12467888899999999999999999987643    21222  2455666777788899999998887654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.70  E-value=3.1e-07  Score=65.73  Aligned_cols=136  Identities=15%  Similarity=0.112  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---Cc--cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-----cCHH
Q 018743          208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGM---KP--NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-----LDTP  277 (351)
Q Consensus       208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~  277 (351)
                      ++..+...+...|++++|...+.+..+...   .+  ...++..+...+...|++++|...+++..+....     ....
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            445555556666666666666666543210   00  0135566666677777777777777665432111     1134


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          278 FFNCIISAYGQAGDVEKMGELFLTMKER----HCV-PDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      ++..+...+...|++++|.+.+++..+.    +.. .....+..+...+...|++++|.+.+++.++....
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            5666777788888888888888876632    111 11345677778888889999999888888776543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.68  E-value=7e-08  Score=82.37  Aligned_cols=118  Identities=8%  Similarity=-0.124  Sum_probs=60.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhH
Q 018743          180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK  259 (351)
Q Consensus       180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  259 (351)
                      .+.+.|++++|...+++..+.... +...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            344555666666666655554222 35555555555666666666666666555543 3344555555555555666666


Q ss_pred             HHHHHHHhhhcCCccCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 018743          260 VDSILRQVENSDVILDTPFFNCIISA--YGQAGDVEKMGELFL  300 (351)
Q Consensus       260 a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~  300 (351)
                      |...++++.+..+. +...+..+..+  +.+.|++++|++.++
T Consensus        93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            66666555554333 23333334333  555555555555555

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.67  E-value=1.7e-07  Score=80.10  Aligned_cols=118  Identities=14%  Similarity=0.018  Sum_probs=94.8

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD   82 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (351)
                      .+.+.|++++|...|++..+..+. +..+|..+..++.+.|++++|++.+++..+..  +.+...|..+..++...|+++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence            467889999999999999887655 78899999999999999999999999998753  446778888999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHH--HhhcCChHHHHHHHH
Q 018743           83 LIEKILAEMSYLGIECSAVTYNTIIDG--YGKAKKFEEMESSFS  124 (351)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~  124 (351)
                      +|.+.+++..+.. +.+...+..+..+  +.+.|++++|++.++
T Consensus        92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999998875 3455566666665  788899999999988

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.66  E-value=4.1e-07  Score=65.41  Aligned_cols=99  Identities=10%  Similarity=0.041  Sum_probs=72.2

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------C---------CCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743          206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHR--------G---------MKPNSITYCSLVSAYSKAGLIMKVDSILRQVE  268 (351)
Q Consensus       206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  268 (351)
                      ...+......+.+.|++++|+..|.+.+..        .         -+.+...|..+..++.+.|++++|...++.+.
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            456677778888888888888888887764        0         02233566777777777788888888877777


Q ss_pred             hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      +.++. +...|..+..++...|++++|...|++..+.
T Consensus        91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            76654 6677777777777788888888877777764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.66  E-value=5.3e-07  Score=61.25  Aligned_cols=95  Identities=7%  Similarity=-0.100  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ  288 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (351)
                      +..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..+..+. +...+..+..++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            3445566677777777777777777663 446667777777777777777777777777776655 56677777777777


Q ss_pred             cCCHHHHHHHHHHHHhc
Q 018743          289 AGDVEKMGELFLTMKER  305 (351)
Q Consensus       289 ~g~~~~a~~~~~~~~~~  305 (351)
                      .|++++|+..+++..+.
T Consensus        98 ~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           98 EHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            77777777777777653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.66  E-value=9.3e-07  Score=62.07  Aligned_cols=103  Identities=14%  Similarity=-0.006  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc------C-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVIL------D-----TPFFNCIISAYGQAGDVEKMGELFLTMKER-----HC  307 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~  307 (351)
                      +......+...|++++|...|++..+..+..      +     ...|..+..++.+.|++++|+..+++.++.     .+
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3444455556666666666666655543321      2     237888888899999999999999888874     12


Q ss_pred             CCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          308 VPD-NITF----ATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       308 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      .|+ ...|    .....++...|++++|+..|++.++..|....
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            454 5577    88889999999999999999999999887654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.62  E-value=2e-07  Score=75.89  Aligned_cols=101  Identities=9%  Similarity=0.042  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHH-
Q 018743          243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQA-  320 (351)
Q Consensus       243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~-  320 (351)
                      .|..+..++.+.|++++|...+++..+..+. +...+..+..+|...|++++|...|+++.+.  .| +...+..+... 
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~  308 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA  308 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence            6788889999999999999999999887655 7888999999999999999999999998864  33 34455555544 


Q ss_pred             HHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          321 YNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       321 ~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      ....+..+++...|.+|....|.++.
T Consensus       309 ~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          309 EQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             --------------------------
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            33456788889999999988877654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.62  E-value=1.2e-07  Score=64.07  Aligned_cols=86  Identities=19%  Similarity=0.145  Sum_probs=58.9

Q ss_pred             cCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 018743          219 AGHIEKMEEYFKKMKHRG--MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG  296 (351)
Q Consensus       219 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  296 (351)
                      .|++++|+..|++..+.+  -+.+...+..+..++...|++++|...+++..+..+. +...+..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            567777777777777653  1334556777777777778888888877777776655 5667777777777778888887


Q ss_pred             HHHHHHHhc
Q 018743          297 ELFLTMKER  305 (351)
Q Consensus       297 ~~~~~~~~~  305 (351)
                      ..+++..+.
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777777654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.61  E-value=3.8e-06  Score=57.51  Aligned_cols=92  Identities=14%  Similarity=0.099  Sum_probs=47.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHH
Q 018743          177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTV---VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN---SITYCSLVSA  250 (351)
Q Consensus       177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~  250 (351)
                      +...+...|++++|...|+.+....+. +.   ..+..+..++...|++++|...+++..+.. +.+   ...+..+..+
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence            344455555666666655555543222 11   344445555555566666666555555542 222   3445555555


Q ss_pred             HHhcCCHhHHHHHHHHhhhc
Q 018743          251 YSKAGLIMKVDSILRQVENS  270 (351)
Q Consensus       251 ~~~~g~~~~a~~~~~~~~~~  270 (351)
                      +...|++++|...|+.+.+.
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            55556666666655555544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.58  E-value=1.5e-06  Score=73.81  Aligned_cols=87  Identities=10%  Similarity=-0.044  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743          242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY  321 (351)
Q Consensus       242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  321 (351)
                      ..|..+..++.+.|++++|+..++++.+..+. +...|..+..+|...|++++|+..|+++.+.. +-+...+..+..++
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            44555555555555555555555555555443 45555555555555556666655555555431 12334445555555


Q ss_pred             HHcCCHHHH
Q 018743          322 NALGMTEAA  330 (351)
Q Consensus       322 ~~~g~~~~A  330 (351)
                      .+.|+.++|
T Consensus       396 ~~~~~~~~a  404 (457)
T 1kt0_A          396 KKAKEHNER  404 (457)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555444

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.56  E-value=2.7e-07  Score=62.32  Aligned_cols=86  Identities=12%  Similarity=-0.035  Sum_probs=39.1

Q ss_pred             CChHHHHHHHHHhhccCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHH
Q 018743           43 GLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES  121 (351)
Q Consensus        43 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  121 (351)
                      |++++|+..|++..+... .+.+...+..+..++...|++++|...+++..+.. |.+..++..+..++...|++++|..
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence            444555555555444100 01123344444445555555555555555554443 2344445555555555555555555


Q ss_pred             HHHHHHhc
Q 018743          122 SFSAMVES  129 (351)
Q Consensus       122 ~~~~~~~~  129 (351)
                      .+++..+.
T Consensus        83 ~~~~al~~   90 (117)
T 3k9i_A           83 LLLKIIAE   90 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            55555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.56  E-value=2.1e-06  Score=70.69  Aligned_cols=122  Identities=9%  Similarity=-0.040  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc---------------CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHR---------------GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI  273 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  273 (351)
                      +..+...+.+.|++++|+..|++.++.               .-+.+...|..+..++.+.|++++|+..++++.+..+.
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  305 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  305 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence            445555666666666666666665541               11234567888888899999999999999998887655


Q ss_pred             cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 018743          274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN  332 (351)
Q Consensus       274 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  332 (351)
                       +...+..+..+|...|++++|++.|+++.+.. +.+...+..+..++...++.+++.+
T Consensus       306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             67888888999999999999999999988762 3356677777777777777776643

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.55  E-value=3.7e-06  Score=60.36  Aligned_cols=102  Identities=12%  Similarity=0.039  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------C---------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKR--------F---------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK  233 (351)
Q Consensus       171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  233 (351)
                      ...+......+.+.|++++|...|......        .         .+.+...|..+..++.+.|++++|+..+++.+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            456777888889999999999999887664        0         01134677888888999999999999999988


Q ss_pred             HcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743          234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI  273 (351)
Q Consensus       234 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  273 (351)
                      +.. +.+...|..+..++...|++++|...|+...+..+.
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            875 557788889999999999999999999998887544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.54  E-value=2.3e-06  Score=61.09  Aligned_cols=132  Identities=14%  Similarity=0.014  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCc-cHH
Q 018743          173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PT----VVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GMKP-NSI  242 (351)
Q Consensus       173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~  242 (351)
                      ++..+...+...|++++|...+++..+.... ++    ...+..+...+...|++++|...+++..+.    +.++ ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3444555555555555555555554332100 01    134556666677777777777777765542    1111 134


Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHhhhcC----C-ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          243 TYCSLVSAYSKAGLIMKVDSILRQVENSD----V-ILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      .+..+...+...|++++|...+++..+..    . ......+..+...+...|++++|.+.+++..+
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            56667777778888888888877765321    1 11234567778888888999999888888764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.53  E-value=3.4e-06  Score=71.66  Aligned_cols=130  Identities=10%  Similarity=-0.017  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 018743          172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--------------VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM  237 (351)
Q Consensus       172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  237 (351)
                      ..+..+...+.+.|++++|...|++..+......              ...|..+..++.+.|++++|+..+++.++.. 
T Consensus       269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-  347 (457)
T 1kt0_A          269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-  347 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence            3455555666666666666666666555322211              5678888888999999999999999988875 


Q ss_pred             CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 018743          238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE-LFLTMK  303 (351)
Q Consensus       238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~  303 (351)
                      +.+...+..+..+|...|++++|...|+++.+..+. +...+..+..++.+.++.+++.+ ++..|.
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557788888999999999999999999998887665 66778888888888888877764 444444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.48  E-value=3.2e-06  Score=69.57  Aligned_cols=121  Identities=8%  Similarity=-0.050  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------CCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Q 018743           67 TYSILIKSCTKFHRFDLIEKILAEMSYL---------------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG  131 (351)
Q Consensus        67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  131 (351)
                      .+..+...+.+.|++++|...|++..+.               --+.+..+|..+..+|.+.|++++|+..+++.++.. 
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-  303 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-  303 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence            3555556666677777777777666541               002234455555666666666666666666665542 


Q ss_pred             CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018743          132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM  190 (351)
Q Consensus       132 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  190 (351)
                       +.+...+..+..++...|++++|++.|++..+.. +.+...+..+..++...++.+++
T Consensus       304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence             3344555555666666666666666666655433 22344444444444444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.44  E-value=2.3e-05  Score=68.28  Aligned_cols=156  Identities=7%  Similarity=-0.054  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-
Q 018743          187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG-  255 (351)
Q Consensus       187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-  255 (351)
                      .++|.+.++.+...++. +...|+.--.++...|+          ++++++.++.+.+.. +-+..+|..-...+.+.| 
T Consensus        45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence            34556666666555333 44445554444444444          667777777776654 445666666666666666 


Q ss_pred             -CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---------
Q 018743          256 -LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG-DVEKMGELFLTMKERHCVPDNITFATMIQAYNAL---------  324 (351)
Q Consensus       256 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---------  324 (351)
                       +++++...++++.+.++. +..+|+.-..++.+.| .++++++.++++++.. +-|...|+.....+.+.         
T Consensus       123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence             557777777777776665 6666766666666666 6777777777776653 23566666666555553         


Q ss_pred             -----CCHHHHHHHHHHHHHhcccCCC
Q 018743          325 -----GMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       325 -----g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                           +.++++++.+++++..+|....
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~P~~~s  227 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTDPNDQS  227 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence                 4568888888888887776543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.43  E-value=1.7e-06  Score=70.36  Aligned_cols=149  Identities=11%  Similarity=0.062  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743           29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID  108 (351)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (351)
                      ...+..+...+.+.|++++|+..|++....   .|+...       +...++.+++...+          ....|..+..
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~  238 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHH
Confidence            456777788888889999999988887763   344321       11222333322211          1136677777


Q ss_pred             HHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCH
Q 018743          109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS-YGRAGMY  187 (351)
Q Consensus       109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~  187 (351)
                      +|.+.|++++|+..+++.++..  +.+...|..+..++...|++++|...|++..+.. +.+...+..+... ....+..
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence            7788888888888888877763  4566677777788888888888888887776543 2233444444444 2334556


Q ss_pred             HHHHHHHHHHHHc
Q 018743          188 DKMRSVMDFMQKR  200 (351)
Q Consensus       188 ~~a~~~~~~~~~~  200 (351)
                      +.+...|..+...
T Consensus       316 ~~a~~~~~~~l~~  328 (338)
T 2if4_A          316 QKQKEMYKGIFKG  328 (338)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHhhCC
Confidence            6777777776554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.43  E-value=7.4e-05  Score=65.09  Aligned_cols=173  Identities=6%  Similarity=-0.128  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-
Q 018743          152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM----------YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-  220 (351)
Q Consensus       152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  220 (351)
                      .++|++.++.+.... +.+...|+.--.++...|+          ++++.+.++.+.+..++ +..+|+.-..++.+.+ 
T Consensus        45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence            345666666666544 3344455555555555555          77788888887776554 6777777777777777 


Q ss_pred             -CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc---------
Q 018743          221 -HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG-LIMKVDSILRQVENSDVILDTPFFNCIISAYGQA---------  289 (351)
Q Consensus       221 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------  289 (351)
                       +++++++.++++.+.. +-+...|+.-...+...| .++++.+.++++.+.++. +...|+.....+.+.         
T Consensus       123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence             6688888888888875 457777777777777777 788888888888887776 777777777666653         


Q ss_pred             -----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 018743          290 -----GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA  329 (351)
Q Consensus       290 -----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  329 (351)
                           +.++++++.+++++... +-|...|..+-..+.+.++.++
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence                 55788999999888753 3356677777666666666443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.38  E-value=2.9e-05  Score=53.95  Aligned_cols=110  Identities=12%  Similarity=0.002  Sum_probs=56.0

Q ss_pred             CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh----cCCHHHHH
Q 018743          221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ----AGDVEKMG  296 (351)
Q Consensus       221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~  296 (351)
                      ++++|...|++..+.| .|+..    |...|...+.+++|...|++..+.+   ++..+..|...|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            3455555555555544 22222    4444444445555555555555443   34445555555554    45555555


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhc
Q 018743          297 ELFLTMKERHCVPDNITFATMIQAYNA----LGMTEAAQNLENKMIAMK  341 (351)
Q Consensus       297 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  341 (351)
                      +.|++..+.|   ++..+..|...|..    .++.++|..++++..+.+
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            5555555543   34445555555555    555556665555555543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.38  E-value=3.5e-06  Score=56.48  Aligned_cols=80  Identities=14%  Similarity=0.102  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK  303 (351)
Q Consensus       224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  303 (351)
                      .|+..+++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...|++..
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4667777777654 456777888888888888888888888888877654 56777888888888888888888888877


Q ss_pred             hc
Q 018743          304 ER  305 (351)
Q Consensus       304 ~~  305 (351)
                      +.
T Consensus        81 ~~   82 (115)
T 2kat_A           81 AA   82 (115)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.32  E-value=1.9e-05  Score=55.46  Aligned_cols=94  Identities=9%  Similarity=-0.035  Sum_probs=65.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------c-----HHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-------C
Q 018743          210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKP------N-----SITYCSLVSAYSKAGLIMKVDSILRQVENS-------D  271 (351)
Q Consensus       210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~  271 (351)
                      ......+.+.|++++|+..|++.++.....      +     ...|..+..++.+.|++++|+..+++..+.       +
T Consensus        15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~   94 (159)
T 2hr2_A           15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   94 (159)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence            334445555666666666666655542110      1     237777788888888888888888887776       5


Q ss_pred             CccCHHhH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          272 VILDTPFF----NCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       272 ~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      +. +...|    .....++...|++++|+..|++..+
T Consensus        95 pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           95 QD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             ST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             Cc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            54 55677    7888888999999999999998875

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.29  E-value=9.7e-06  Score=68.94  Aligned_cols=127  Identities=10%  Similarity=-0.081  Sum_probs=89.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcC---C---Cc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhh-----cCCc-c-CHHhHH
Q 018743          215 TFGKAGHIEKMEEYFKKMKHRG---M---KP-NSITYCSLVSAYSKAGLIMKVDSILRQVEN-----SDVI-L-DTPFFN  280 (351)
Q Consensus       215 ~~~~~~~~~~a~~~~~~~~~~~---~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~  280 (351)
                      .+...|++++|..++++.++..   +   .| ...+++.|..+|...|++++|+.++++..+     .|.. | ...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3557888999988888876431   1   12 345788888889999999999888887653     2221 1 234678


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743          281 CIISAYGQAGDVEKMGELFLTMKER-----HC-VPD-NITFATMIQAYNALGMTEAAQNLENKMIAMK  341 (351)
Q Consensus       281 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  341 (351)
                      .|...|...|++++|..++++..+.     |. .|+ ..+...+..++...+++++|..++.++.+..
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999988887632     21 122 2345566677778888999999998887644

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.27  E-value=5.4e-05  Score=52.50  Aligned_cols=111  Identities=7%  Similarity=-0.130  Sum_probs=69.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHh----cCCHH
Q 018743            7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK----FHRFD   82 (351)
Q Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~   82 (351)
                      .+++++|...|++..+.|.. ...    +...|...+.+++|+++|++..+    .-+...+..+...|..    .++++
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~----~g~~~a~~~Lg~~y~~G~g~~~d~~   78 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACE----LNSGNGCRFLGDFYENGKYVKKDLR   78 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             ccCHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHcCCCCCccHH
Confidence            35667777777777766522 322    55666666667777777777665    2345556666666665    56777


Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHhh----cCChHHHHHHHHHHHhc
Q 018743           83 LIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSFSAMVES  129 (351)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~  129 (351)
                      +|..+|++..+.|   +...+..|...|..    .+++++|...|++..+.
T Consensus        79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            7777777766654   45556666666666    56666777766666554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.21  E-value=2e-05  Score=67.06  Aligned_cols=126  Identities=10%  Similarity=0.047  Sum_probs=95.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcC---C---CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCc-cHHHHH
Q 018743          180 SYGRAGMYDKMRSVMDFMQKRF---F---FP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-----G-MKP-NSITYC  245 (351)
Q Consensus       180 ~~~~~~~~~~a~~~~~~~~~~~---~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~  245 (351)
                      .+...|++++|..++++..+..   +   .| ...+++.+..+|...|++++|..++++.++.     | -.| ...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3567899999999998875521   1   12 2467899999999999999999999987632     2 122 346789


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHhhh-----cCCc-c-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          246 SLVSAYSKAGLIMKVDSILRQVEN-----SDVI-L-DTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       246 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      .|...|...|++++|+.++++..+     .|.. | ...+.+.+..++...+.+++|..+|.++++.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988653     2322 1 2334566777888899999999999998753

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.20  E-value=4.6e-06  Score=55.32  Aligned_cols=60  Identities=13%  Similarity=0.084  Sum_probs=25.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN  269 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  269 (351)
                      +..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3334444444444444444444444332 22333444444444444444444444444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.19  E-value=9.1e-06  Score=54.42  Aligned_cols=76  Identities=13%  Similarity=0.085  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743           13 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM   91 (351)
Q Consensus        13 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   91 (351)
                      |+..|+...+..+. +...+..+...+...|++++|+..|++..+..  +.+...|..+..++...|++++|...|++.
T Consensus         4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33444444433322 34444444444444444444444444444321  122333444444444444444444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.19  E-value=8.8e-06  Score=57.02  Aligned_cols=97  Identities=10%  Similarity=0.098  Sum_probs=63.7

Q ss_pred             cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH----------hHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743          219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI----------MKVDSILRQVENSDVILDTPFFNCIISAYGQ  288 (351)
Q Consensus       219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (351)
                      .+.+++|...++...+.. +.+...|..+..++...+++          ++|+..|++..+.++. +...|..+..+|..
T Consensus        15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence            345666666666666654 44566666666666655543          4777777777777665 66677777777776


Q ss_pred             cC-----------CHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          289 AG-----------DVEKMGELFLTMKERHCVPDNITFATMIQ  319 (351)
Q Consensus       289 ~g-----------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  319 (351)
                      .|           ++++|++.|+++++.  .|+...|...+.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~  132 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            54           788888888888874  666555544433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.17  E-value=1.3e-05  Score=53.16  Aligned_cols=94  Identities=10%  Similarity=-0.054  Sum_probs=75.4

Q ss_pred             ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------H
Q 018743          239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-------N  311 (351)
Q Consensus       239 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-------~  311 (351)
                      ++...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|++.+++..+.  .|+       .
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~   78 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRS   78 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHH
Confidence            35667888899999999999999999999988765 7888999999999999999999999999975  444       4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 018743          312 ITFATMIQAYNALGMTEAAQNLEN  335 (351)
Q Consensus       312 ~~~~~l~~~~~~~g~~~~A~~~~~  335 (351)
                      ..+..+..++...|+.+.|...++
T Consensus        79 ~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           79 KLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHhHhhhHhHHH
Confidence            456666667777776666654443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.15  E-value=5.4e-05  Score=47.90  Aligned_cols=81  Identities=16%  Similarity=0.115  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018743          241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA  320 (351)
Q Consensus       241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  320 (351)
                      ...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            344555555566666666666666665554433 45555566666666666666666666665542 2234444444444


Q ss_pred             HHH
Q 018743          321 YNA  323 (351)
Q Consensus       321 ~~~  323 (351)
                      +..
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.13  E-value=8.7e-06  Score=57.03  Aligned_cols=91  Identities=8%  Similarity=0.012  Sum_probs=77.4

Q ss_pred             HhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743          252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV----------EKMGELFLTMKERHCVPDNITFATMIQAY  321 (351)
Q Consensus       252 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  321 (351)
                      .+.+.+++|.+.++...+..+. +...|..+..++...+++          ++|+..|++.++.. +-+...|..+..+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay   90 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence            3556789999999999998877 889999899999988775          59999999999863 23577899999999


Q ss_pred             HHcC-----------CHHHHHHHHHHHHHhcccC
Q 018743          322 NALG-----------MTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       322 ~~~g-----------~~~~A~~~~~~~~~~~~~~  344 (351)
                      ...|           ++++|+..|+++++.+|..
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            9875           8999999999999998875

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.13  E-value=6.5e-05  Score=47.50  Aligned_cols=81  Identities=16%  Similarity=0.144  Sum_probs=46.8

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743          206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA  285 (351)
Q Consensus       206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  285 (351)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence            3445555556666666666666666666543 334555666666666666666666666666655433 44455555444


Q ss_pred             HHh
Q 018743          286 YGQ  288 (351)
Q Consensus       286 ~~~  288 (351)
                      +..
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.08  E-value=2.8e-05  Score=50.50  Aligned_cols=66  Identities=9%  Similarity=0.056  Sum_probs=51.0

Q ss_pred             CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      +-+...+..+...+...|++++|...|+++.+..+. +...|..+..+|...|++++|++.|++..+
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            335667777888888888888888888888877655 566777888888888888888888887765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.04  E-value=2.3e-05  Score=50.98  Aligned_cols=62  Identities=11%  Similarity=0.104  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 018743           65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV  127 (351)
Q Consensus        65 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  127 (351)
                      ...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|.+.|++.+
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3344444444445555555555555444443 2234444445555555555555555554443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.97  E-value=3.9e-05  Score=49.58  Aligned_cols=89  Identities=18%  Similarity=0.157  Sum_probs=58.1

Q ss_pred             HHHHHHhcCCHhHHHHHHHHhhhcCCccCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHc
Q 018743          247 LVSAYSKAGLIMKVDSILRQVENSDVILDTP-FFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQAYNAL  324 (351)
Q Consensus       247 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~  324 (351)
                      ....+...|++++|...++++.+..+. +.. .+..+..++...|++++|.+.|++..+..  |+ ...+..        
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~--------   74 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--PDSPALQAR--------   74 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHH--------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHH--------
Confidence            344566677777777777777766544 556 77777777777888888888888777652  22 222211        


Q ss_pred             CCHHHHHHHHHHHHHhcccCCC
Q 018743          325 GMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       325 g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      +.+.++...+++.....|.++.
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCSS
T ss_pred             HHHHHHHHHHHHHhccCccccc
Confidence            5566777777777666665543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.80  E-value=0.0079  Score=48.57  Aligned_cols=73  Identities=11%  Similarity=0.032  Sum_probs=42.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 018743          168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY  244 (351)
Q Consensus       168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  244 (351)
                      +.+..++..+...+...|++++|...+++....+  |+...|..+...+...|++++|.+.+.+....  .|...+|
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~  346 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL  346 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence            4455555555555555566666666666666653  45555555556666666666666666666654  3444443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.75  E-value=0.0015  Score=52.72  Aligned_cols=65  Identities=9%  Similarity=-0.032  Sum_probs=35.7

Q ss_pred             CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 018743           97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL  164 (351)
Q Consensus        97 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  164 (351)
                      +.+..+|..+...+...|++++|...+++++..+   |+...|..+...+.-.|++++|.+.+++...
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFN  338 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3445555555444444566666666666655542   4444555555555556666666666655554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.66  E-value=0.00064  Score=47.12  Aligned_cols=83  Identities=13%  Similarity=0.055  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---CHhHHHHHHHHhhhcC-CccCHHhHHHHHHHHHhcCCHHHHHH
Q 018743          222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSD-VILDTPFFNCIISAYGQAGDVEKMGE  297 (351)
Q Consensus       222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~  297 (351)
                      ...+.+-|.+..+.+ +++..+...+..++++.+   +.+++..+++.+.+.+ +.-+...+-.+.-++.+.|++++|.+
T Consensus        14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            344455555554444 355566666666666655   4446666666666554 21123444455555666666666666


Q ss_pred             HHHHHHhc
Q 018743          298 LFLTMKER  305 (351)
Q Consensus       298 ~~~~~~~~  305 (351)
                      .++.+.+.
T Consensus        93 y~~~lL~i  100 (152)
T 1pc2_A           93 YVRGLLQT  100 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            66666653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.58  E-value=0.0006  Score=43.82  Aligned_cols=64  Identities=20%  Similarity=0.181  Sum_probs=55.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          282 IISAYGQAGDVEKMGELFLTMKERHCVPDNI-TFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       282 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      ....+...|++++|++.|+++.+.. +.+.. .+..+..++...|++++|...++++++.+|....
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   70 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA   70 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence            4567888999999999999999863 33566 8889999999999999999999999999887654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.56  E-value=0.00034  Score=58.53  Aligned_cols=88  Identities=11%  Similarity=-0.054  Sum_probs=62.0

Q ss_pred             hcCCHhHHHHHHHHhhh---cCCcc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHHHHHHH
Q 018743          253 KAGLIMKVDSILRQVEN---SDVIL----DTPFFNCIISAYGQAGDVEKMGELFLTMKER-----H-CVPD-NITFATMI  318 (351)
Q Consensus       253 ~~g~~~~a~~~~~~~~~---~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~-~~~~~~l~  318 (351)
                      ..|++++|+.++++..+   .-+.|    ...+++.|..+|...|++++|+.++++..+.     | -.|+ ..+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            35778888888877553   11112    2356788888888888888888888887632     2 1233 34678888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Q 018743          319 QAYNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       319 ~~~~~~g~~~~A~~~~~~~~~~  340 (351)
                      ..|...|++++|..+++++++.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHH
Confidence            8888999999998888888654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.53  E-value=0.00074  Score=56.57  Aligned_cols=93  Identities=12%  Similarity=0.023  Sum_probs=62.0

Q ss_pred             HHHHHhcCCHhHHHHHHHHhhhcC---Ccc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHH
Q 018743          248 VSAYSKAGLIMKVDSILRQVENSD---VIL----DTPFFNCIISAYGQAGDVEKMGELFLTMKER-----H-CVPD-NIT  313 (351)
Q Consensus       248 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~-~~~  313 (351)
                      +..+...|++++|+.++++..+..   ..|    ...+++.++.+|...|++++|+.+++++.+.     | ..|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            444556778888888887765321   111    2346777788888888888888888876532     1 1222 346


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743          314 FATMIQAYNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~  340 (351)
                      ++.|...|...|++++|..+++++++.
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            777888888888888888888877653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.48  E-value=0.0015  Score=41.47  Aligned_cols=67  Identities=6%  Similarity=-0.021  Sum_probs=43.4

Q ss_pred             CccHHHHHHHHHHHHhcCC---HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          238 KPNSITYCSLVSAYSKAGL---IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       238 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      +.+...+..+..++...++   .++|..++++..+.++. ++.....+...+.+.|++++|+..|+++.+.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3455566666666654443   56677777777766655 6666666667777777777777777777664

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.45  E-value=0.00048  Score=57.65  Aligned_cols=60  Identities=8%  Similarity=-0.061  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCCCHhHHHHHHHHHhhcCChHHHHHHHHHH
Q 018743           67 TYSILIKSCTKFHRFDLIEKILAEMSYL-----G--IECSAVTYNTIIDGYGKAKKFEEMESSFSAM  126 (351)
Q Consensus        67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  126 (351)
                      +++.+..+|...|++++|+.++++....     |  .+....+++.|...|...|++++|+.++++.
T Consensus       342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3444445555555555555544444321     1  1112233444444444444444444444443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.43  E-value=0.0012  Score=55.38  Aligned_cols=87  Identities=10%  Similarity=0.024  Sum_probs=41.5

Q ss_pred             HhcCCHHHHHHHHHHHHHcC---CC----CCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc-----CCCCCC-HhHHHHH
Q 018743           76 TKFHRFDLIEKILAEMSYLG---IE----CSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-----GGCHPD-IFTLNSM  142 (351)
Q Consensus        76 ~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~-~~~~~~l  142 (351)
                      ...|++++|+.++++..+..   +.    ....+++.+...|...|++++|+.++++.++.     +...|+ ..+++.+
T Consensus       298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            34455555555555544320   11    12334555555555555555555555544321     111222 2245555


Q ss_pred             HHHHhcCCCHHHHHHHHHHH
Q 018743          143 ISAYGNSGNIEKMEKWYNEF  162 (351)
Q Consensus       143 ~~~~~~~~~~~~a~~~~~~~  162 (351)
                      ...|...|++++|..++++.
T Consensus       378 a~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          378 GKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHH
Confidence            55566666666665555554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.42  E-value=0.002  Score=41.95  Aligned_cols=67  Identities=15%  Similarity=0.021  Sum_probs=50.3

Q ss_pred             ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC------CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSD------VILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       239 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      .+......+...+...|++..|...++...+..      ..+...++..+..++.+.|+++.|...++++.+.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            355566778888888888888888888866531      1234667788888888888888888888888764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.36  E-value=0.03  Score=43.45  Aligned_cols=88  Identities=8%  Similarity=-0.039  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc-----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHH
Q 018743          116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGN-----SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA-GMYDK  189 (351)
Q Consensus       116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~  189 (351)
                      ...|...+++.++...--.+...|..+...|.+     .|+.++|.+.|++.++.+..-+..++......++.. |+.+.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            345566666665542111124456666666666     366666666666666643212355555566666653 66666


Q ss_pred             HHHHHHHHHHcCCC
Q 018743          190 MRSVMDFMQKRFFF  203 (351)
Q Consensus       190 a~~~~~~~~~~~~~  203 (351)
                      +.+.+++.....+.
T Consensus       259 a~~~L~kAL~a~p~  272 (301)
T 3u64_A          259 FDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHcCCCC
Confidence            66666666665444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.35  E-value=0.0065  Score=38.44  Aligned_cols=65  Identities=12%  Similarity=0.151  Sum_probs=32.4

Q ss_pred             cHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743           64 DVYTYSILIKSCTKFHR---FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus        64 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                      |...+..+..++...++   .++|..++++..+.. |-+......+...+.+.|++++|+..|+++.+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            44444444444432222   455555555555544 334455555555555555555555555555544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.29  E-value=0.0052  Score=42.57  Aligned_cols=84  Identities=10%  Similarity=-0.070  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHhHHH
Q 018743          187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG---HIEKMEEYFKKMKHRGMKP--NSITYCSLVSAYSKAGLIMKVD  261 (351)
Q Consensus       187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~  261 (351)
                      ...+.+.|.+....+. ++..+...+..++++.+   +.++++.++++..+.+ .|  +...+-.+.-++.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            3344444554444333 35555555555666655   4446666666666553 23  2334445555556666666666


Q ss_pred             HHHHHhhhcCC
Q 018743          262 SILRQVENSDV  272 (351)
Q Consensus       262 ~~~~~~~~~~~  272 (351)
                      +.++.+.+..|
T Consensus        92 ~y~~~lL~ieP  102 (152)
T 1pc2_A           92 KYVRGLLQTEP  102 (152)
T ss_dssp             HHHHHHHHHCT
T ss_pred             HHHHHHHhcCC
Confidence            66666665543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.24  E-value=0.0071  Score=41.40  Aligned_cols=113  Identities=10%  Similarity=0.040  Sum_probs=72.5

Q ss_pred             CCHHhHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCccHH-HHHHHHHH------HHhcCCHhHHHHHHHHhhhc
Q 018743          204 PTVVTYNIVIETFGKAGHI------EKMEEYFKKMKHRGMKPNSI-TYCSLVSA------YSKAGLIMKVDSILRQVENS  270 (351)
Q Consensus       204 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~a~~~~~~~~~~  270 (351)
                      -|..+|-..+....+.|++      ++..++|++.... ++|+.. .|...+..      +...++.++|.++|+.+.+.
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4677888888888878888      8888888887775 466431 22222221      22346777788888777655


Q ss_pred             CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ  319 (351)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  319 (351)
                      .-.. ..+|....+.-.+.|+++.|.+++.+.+..+.. +...+...++
T Consensus        90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~  136 (161)
T 4h7y_A           90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR  136 (161)
T ss_dssp             CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence            3333 666666667777778888888888887776544 3344444443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.15  E-value=0.022  Score=52.18  Aligned_cols=152  Identities=9%  Similarity=0.038  Sum_probs=83.2

Q ss_pred             HHhccCChHHHHH-HHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh
Q 018743           38 AYGQSGLLDEAFS-TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF  116 (351)
Q Consensus        38 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (351)
                      .....+++++|.+ ++..+       |+......++..+.+.|..+.|.++.+.-       .     .-.......|++
T Consensus       608 ~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~  668 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQL  668 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCH
T ss_pred             HHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCH
Confidence            3345677777765 43211       11222366666677777777777655311       1     112334567888


Q ss_pred             HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018743          117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF  196 (351)
Q Consensus       117 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  196 (351)
                      ++|.++.+.+       .+...|..+...+.+.++++.|.+.|..+..         +..+...+...|+.+...++-+.
T Consensus       669 ~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~  732 (814)
T 3mkq_A          669 TLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD  732 (814)
T ss_dssp             HHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence            8887775433       3556788888888888888888888877643         23344444445555554444443


Q ss_pred             HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743          197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK  230 (351)
Q Consensus       197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  230 (351)
                      ....|.      ++....++.+.|++++|++++.
T Consensus       733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~  760 (814)
T 3mkq_A          733 AETTGK------FNLAFNAYWIAGDIQGAKDLLI  760 (814)
T ss_dssp             HHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence            333221      1222333444455555554443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.11  E-value=0.054  Score=49.59  Aligned_cols=126  Identities=9%  Similarity=0.007  Sum_probs=70.4

Q ss_pred             HHhcCCHHHHHH-HHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHH
Q 018743           75 CTKFHRFDLIEK-ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE  153 (351)
Q Consensus        75 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  153 (351)
                      ....+++++|.+ ++..+     + +......++..+.+.|.+++|+++.+..        .     .-.......|+++
T Consensus       609 ~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~-----~~f~~~l~~~~~~  669 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQ--------D-----QKFELALKVGQLT  669 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------H-----HHHHHHHHHTCHH
T ss_pred             HHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCc--------c-----hheehhhhcCCHH
Confidence            345677777765 44211     1 1222256666677777777777654211        0     1123345567777


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK  233 (351)
Q Consensus       154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  233 (351)
                      .|.++.+.      ..+...|..+...+.+.|+++.|.+.|..+..         |..+...+...|+.+...++.+...
T Consensus       670 ~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~  734 (814)
T 3mkq_A          670 LARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE  734 (814)
T ss_dssp             HHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence            77776543      24566777777777777777777777776543         2334444444555555444444433


Q ss_pred             H
Q 018743          234 H  234 (351)
Q Consensus       234 ~  234 (351)
                      .
T Consensus       735 ~  735 (814)
T 3mkq_A          735 T  735 (814)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.03  E-value=0.0062  Score=40.56  Aligned_cols=82  Identities=11%  Similarity=0.027  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhH---HHHHHHHhhhcC-CccCHHhHHHHHHHHHhcCCHHHHHH
Q 018743          222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK---VDSILRQVENSD-VILDTPFFNCIISAYGQAGDVEKMGE  297 (351)
Q Consensus       222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~  297 (351)
                      ...+.+-|......| .++..+-..+..++.+..+...   ++.+++.+.+.+ +.-.....-.|.-++.+.|++++|.+
T Consensus        17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            334444444444433 3455555555555555544433   555555555443 11122333344445555555555555


Q ss_pred             HHHHHHh
Q 018743          298 LFLTMKE  304 (351)
Q Consensus       298 ~~~~~~~  304 (351)
                      .++.+.+
T Consensus        96 ~~~~lL~  102 (126)
T 1nzn_A           96 YVRGLLQ  102 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555555

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.00  E-value=0.01  Score=38.44  Aligned_cols=67  Identities=7%  Similarity=-0.120  Sum_probs=34.0

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccC-----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-----DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL   94 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   94 (351)
                      +...+..+...+.+.|+++.|..+|+...+..     .-.+....+..+..++.+.|+++.|...++++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            34444555566666666666666665554321     01123344555555555555555555555555544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.95  E-value=0.03  Score=38.37  Aligned_cols=64  Identities=11%  Similarity=0.169  Sum_probs=45.4

Q ss_pred             cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743          219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS  284 (351)
Q Consensus       219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  284 (351)
                      .+++++|.++|+.++..+-. -...|....+.-.+.|+...|.+++......++.| ...+...++
T Consensus        73 i~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~  136 (161)
T 4h7y_A           73 IQEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR  136 (161)
T ss_dssp             HHCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence            36788888888888765323 26677777777778888989999988888887774 344444443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.92  E-value=0.035  Score=43.08  Aligned_cols=85  Identities=11%  Similarity=0.047  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhc-----CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc-CCH
Q 018743          222 IEKMEEYFKKMKHRGMKPN---SITYCSLVSAYSKA-----GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA-GDV  292 (351)
Q Consensus       222 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~  292 (351)
                      ...|...+++..+.  .|+   ...|..+...|...     |+.++|.+.|++..+.++.-+..++......++.. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            45666677777665  343   45677777777773     88888888888888776543466777777777774 888


Q ss_pred             HHHHHHHHHHHhcCCC
Q 018743          293 EKMGELFLTMKERHCV  308 (351)
Q Consensus       293 ~~a~~~~~~~~~~~~~  308 (351)
                      +++.+.+++.......
T Consensus       257 ~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          257 AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            8888888888876544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.1  Score=37.17  Aligned_cols=99  Identities=15%  Similarity=0.144  Sum_probs=45.3

Q ss_pred             hccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHH
Q 018743           40 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM  119 (351)
Q Consensus        40 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  119 (351)
                      .+.|+++.|.++.+.+.       +...|..|.......|+++-|.+.|.....         +..+.-.|.-.|+.+..
T Consensus        16 L~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred             HhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence            34555555555544431       244455555555555555555555554431         22233334444554444


Q ss_pred             HHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 018743          120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE  161 (351)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  161 (351)
                      .++-+....++       -++.....+...|+++++.++|.+
T Consensus        80 ~kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           80 SKMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            43333332221       133333444445555555555543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.53  E-value=0.037  Score=36.84  Aligned_cols=84  Identities=6%  Similarity=-0.073  Sum_probs=39.0

Q ss_pred             HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 018743          259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK---MGELFLTMKERHCVP--DNITFATMIQAYNALGMTEAAQNL  333 (351)
Q Consensus       259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~  333 (351)
                      .+.+-+......+. ++..+-..+..++.+..+...   ++.+++.+...+ .|  .....-.|.-++.+.|++++|++.
T Consensus        19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            33334443333332 344444455555555554333   555555554432 12  122333444455555555555555


Q ss_pred             HHHHHHhcccC
Q 018743          334 ENKMIAMKENS  344 (351)
Q Consensus       334 ~~~~~~~~~~~  344 (351)
                      ++.+++..|.+
T Consensus        97 ~~~lL~~eP~n  107 (126)
T 1nzn_A           97 VRGLLQTEPQN  107 (126)
T ss_dssp             HHHHHHHCTTC
T ss_pred             HHHHHHhCCCC
Confidence            55555555543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.36  E-value=0.12  Score=34.74  Aligned_cols=141  Identities=13%  Similarity=0.018  Sum_probs=78.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHH
Q 018743           75 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK  154 (351)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  154 (351)
                      ..-.|..++..++..+.....   +..-||-++.-....-+-+-..++++.+-+..    |.          ...|+...
T Consensus        17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----Di----------s~C~NlKr   79 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DL----------DKCQNLKS   79 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CG----------GGCSCTHH
T ss_pred             HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------HhhhcHHH
Confidence            344566777777777766543   45555555555555566666666666653321    21          12333444


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH  234 (351)
Q Consensus       155 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  234 (351)
                      ....+-.+     ..+...+..-+..+...|..++..+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+.-+
T Consensus        80 Vi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A           80 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            44333332     12334455556666666777776666666433 2345566666666777777777777777777766


Q ss_pred             cCCC
Q 018743          235 RGMK  238 (351)
Q Consensus       235 ~~~~  238 (351)
                      .|++
T Consensus       154 kG~k  157 (172)
T 1wy6_A          154 KGEK  157 (172)
T ss_dssp             TTCH
T ss_pred             hhhH
Confidence            6643

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.27  E-value=0.42  Score=40.20  Aligned_cols=189  Identities=11%  Similarity=0.106  Sum_probs=85.4

Q ss_pred             CChHHHHHHHHHhhcc----CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHH----Hhhc
Q 018743           43 GLLDEAFSTINDMKSV----SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL-GIECSAVTYNTIIDG----YGKA  113 (351)
Q Consensus        43 ~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~----~~~~  113 (351)
                      |+++.|++.+-.+.+.    ............++..|...++++...+.+..+.+. |..+..  ...++..    ....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence            6677777766555432    223344556667777777777877776666655433 322221  2222222    2122


Q ss_pred             CChHH--HHHHHHHHHhc--CCCCC---CHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHH
Q 018743          114 KKFEE--MESSFSAMVES--GGCHP---DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA-D----IQTLNILTKSY  181 (351)
Q Consensus       114 ~~~~~--a~~~~~~~~~~--~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~  181 (351)
                      ...+.  -..+.+.....  +.+..   .......|...+...|++.+|.+++..+...-... +    ...+..-++.|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            22211  11111111110  00001   01122344555666666666666666654321111 1    22344455556


Q ss_pred             HhcCCHHHHHHHHHHHHH----cCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          182 GRAGMYDKMRSVMDFMQK----RFFFPT--VVTYNIVIETFGKAGHIEKMEEYFKKMK  233 (351)
Q Consensus       182 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~  233 (351)
                      ...+++..|..++.++..    ....|+  ...+...+..+...+++.+|...|.++.
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            666666666666655432    111111  1223444445555556655555555543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.27  E-value=0.095  Score=35.11  Aligned_cols=67  Identities=9%  Similarity=-0.042  Sum_probs=31.2

Q ss_pred             CccHHHHHHHHHHHHhcCCH---hHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          238 KPNSITYCSLVSAYSKAGLI---MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       238 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      .|+..+--.+..++.+..+.   .+++.+++.+.+.++.-....+-.+.-++.+.|++++|.+..+.+.+
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            34444444444444444332   23455555554443222233344444455555555555555555554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.21  E-value=0.15  Score=34.31  Aligned_cols=68  Identities=15%  Similarity=0.048  Sum_probs=51.4

Q ss_pred             CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 018743           99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK  168 (351)
Q Consensus        99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  168 (351)
                      +.......++.+...|.-++-.+++..+...  .+|++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus        90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           90 LNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            4556666777788888888888888875443  4677777888888888888888888888888877754

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.2  Score=35.67  Aligned_cols=130  Identities=13%  Similarity=0.111  Sum_probs=93.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 018743          178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI  257 (351)
Q Consensus       178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  257 (351)
                      .......|+++.|.++.+.+      .+...|..+.......|+++-|.+.|.+...         +..+.-.|...|+.
T Consensus        12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred             HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence            34456789999999987765      3788999999999999999999999987543         34455556678888


Q ss_pred             hHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743          258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM  337 (351)
Q Consensus       258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  337 (351)
                      +...++-+.....+      -++....++...|++++++++|.+.-.   .|..      +......|-.+.|.++.+++
T Consensus        77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence            87776666655443      255666778889999999999865432   2211      11223467788888888776

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.04  E-value=0.9  Score=41.79  Aligned_cols=155  Identities=9%  Similarity=0.045  Sum_probs=63.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhH--HHHHHHHHhcCCCH
Q 018743           75 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT--LNSMISAYGNSGNI  152 (351)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~  152 (351)
                      +...|+-+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+....  .|....  -.++.-+|+..|+.
T Consensus       500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~--dp~vRygaa~alglAyaGTGn~  576 (963)
T 4ady_A          500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD--ESLLRYGGAFTIALAYAGTGNN  576 (963)
T ss_dssp             HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTSCCH
T ss_pred             hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCCH
Confidence            334555555555555544321 1111112222223334555555555555554321  222111  11223345556666


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHH
Q 018743          153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI-EKMEEYFKK  231 (351)
Q Consensus       153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~  231 (351)
                      ....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++++.+..
T Consensus       577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~  654 (963)
T 4ady_A          577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP  654 (963)
T ss_dssp             HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence            55555666555421 1222222222223333455554555554444332 23333222222333333332 455555555


Q ss_pred             HHH
Q 018743          232 MKH  234 (351)
Q Consensus       232 ~~~  234 (351)
                      +..
T Consensus       655 L~~  657 (963)
T 4ady_A          655 LTK  657 (963)
T ss_dssp             HHT
T ss_pred             Hcc
Confidence            543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.68  Score=38.96  Aligned_cols=260  Identities=10%  Similarity=0.023  Sum_probs=151.3

Q ss_pred             CCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHH--HHHHHHHHHhcCC
Q 018743            8 KQPEQASLLFEVMLSD-----GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT--YSILIKSCTKFHR   80 (351)
Q Consensus         8 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~   80 (351)
                      |++++|++.+-.+.+.     +...+......++..|...|+++...+.+..+.+.+|..+...+  ...++........
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~  109 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS  109 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence            6788888887666542     33446788899999999999999998988888776665444332  1222222223333


Q ss_pred             HHH--HHHHHHHHHH--cC-CCC---CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC-CCCCC---HhHHHHHHHHHhc
Q 018743           81 FDL--IEKILAEMSY--LG-IEC---SAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-GCHPD---IFTLNSMISAYGN  148 (351)
Q Consensus        81 ~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~  148 (351)
                      .+.  -..+.+.+..  .| +-.   .......|...+...|++.+|..++..+.... +....   ...+...+..|..
T Consensus       110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~  189 (445)
T 4b4t_P          110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL  189 (445)
T ss_dssp             THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            322  1222221111  01 111   22334567889999999999999999986432 22111   2356667888999


Q ss_pred             CCCHHHHHHHHHHHHh----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHH----HHHHHH
Q 018743          149 SGNIEKMEKWYNEFNL----MGVKAD--IQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNI----VIETFG  217 (351)
Q Consensus       149 ~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~----l~~~~~  217 (351)
                      .+++..|..++.++..    ...+|+  ...+...+..+...+++.+|-..|.++.... ...+...+..    ++.+..
T Consensus       190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i  269 (445)
T 4b4t_P          190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV  269 (445)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence            9999999999988642    222222  2345667778888899999988887765421 1112222221    111222


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc--CCHhHHHHHHHHh
Q 018743          218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA--GLIMKVDSILRQV  267 (351)
Q Consensus       218 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~  267 (351)
                      -.+..+.-..++........-++...+..++.+|...  .+++.....|...
T Consensus       270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~  321 (445)
T 4b4t_P          270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV  321 (445)
T ss_dssp             HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred             hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence            2222222222333333332345667788888888754  3455555555443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=95.84  E-value=0.17  Score=31.86  Aligned_cols=63  Identities=11%  Similarity=0.211  Sum_probs=46.8

Q ss_pred             CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ  319 (351)
Q Consensus       256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  319 (351)
                      |.-+..+-++.+...+..|++.+..+.+++|.+.+++..|+++|+..+.. +.+...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence            45567777777788888888888888888888888888888888887754 3334455666654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.78  E-value=0.26  Score=33.50  Aligned_cols=67  Identities=9%  Similarity=-0.042  Sum_probs=33.0

Q ss_pred             CccHHHHHHHHHHHHhcCCH---hHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          238 KPNSITYCSLVSAYSKAGLI---MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       238 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      .|+..+-..+..++.+..+.   .+++.+++.+.+.++.-.....-.+.-++.+.|++++|.++.+.+.+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            34445544455555554432   34555555555443322233333444455555666666555555555

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.62  E-value=0.39  Score=39.58  Aligned_cols=70  Identities=16%  Similarity=0.102  Sum_probs=41.6

Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCCCCHHHHH
Q 018743          245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK-----ERHCVPDNITFA  315 (351)
Q Consensus       245 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~~  315 (351)
                      ..++..+...|+++++...+..+....+. +...+..++.++.+.|+..+|++.|+++.     +.|+.|+..+-.
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            34455555666666666666666555443 55666666666666666666666666554     236666655433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.45  E-value=0.25  Score=44.29  Aligned_cols=126  Identities=14%  Similarity=0.114  Sum_probs=74.1

Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHHcCCCccHHHH-HHHHHHHHhcCC-HhHHHHHHHHhhhc------CCc-cCH---
Q 018743          210 NIVIETFGKAGH-IEKMEEYFKKMKHRGMKPNSITY-CSLVSAYSKAGL-IMKVDSILRQVENS------DVI-LDT---  276 (351)
Q Consensus       210 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~-~~~a~~~~~~~~~~------~~~-~~~---  276 (351)
                      ..++..+...++ .+.|..+++++.... +.....+ ..++..+...++ --+|.+++.+..+.      ... .+.   
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~-p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~  330 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKD-PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA  330 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence            344444545555 577888888887763 2222222 233333222221 22344444443211      001 011   


Q ss_pred             -------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743          277 -------PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM  337 (351)
Q Consensus       277 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  337 (351)
                             .....=...+...|+++-|+++-++.... .+.+-.+|..|..+|...|+++.|+-.++.+
T Consensus       331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                   12222244567789999999999998875 3445779999999999999999998888776

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=95.29  E-value=0.38  Score=32.18  Aligned_cols=63  Identities=11%  Similarity=0.211  Sum_probs=47.7

Q ss_pred             CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ  319 (351)
Q Consensus       256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  319 (351)
                      |.-+..+-++.+...++.|++.+..+.+++|-+.+++..|+++|+..+.. +.+...+|..+++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence            45566777777778888888888888888888888888888888888765 3444556776654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.18  E-value=0.38  Score=43.14  Aligned_cols=54  Identities=7%  Similarity=-0.114  Sum_probs=36.6

Q ss_pred             HHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743          248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM  302 (351)
Q Consensus       248 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  302 (351)
                      ...|...|+++.|+.+-++.....+. +-.+|..|..+|...|+++.|+-.+..+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            33455667777777777777666544 5667777777777777777777666654

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=94.88  E-value=0.39  Score=30.13  Aligned_cols=78  Identities=18%  Similarity=0.134  Sum_probs=39.9

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 018743            9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL   88 (351)
Q Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~   88 (351)
                      ..++|..+-+.+...+.  ...+--.-+..+...|++++|..+.+.+.     .||...|..|-.  .+.|-.+++...+
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~rL   92 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALESRL   92 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence            45566666666555432  11111112334556666666666555433     466666655433  2555556666666


Q ss_pred             HHHHHcC
Q 018743           89 AEMSYLG   95 (351)
Q Consensus        89 ~~~~~~~   95 (351)
                      .++..+|
T Consensus        93 ~~la~sg   99 (116)
T 2p58_C           93 NRLARSQ   99 (116)
T ss_dssp             HHHTTCC
T ss_pred             HHHHhCC
Confidence            5555555

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.83  E-value=2.4  Score=40.62  Aligned_cols=183  Identities=12%  Similarity=0.059  Sum_probs=96.4

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-----------------
Q 018743          106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-----------------  168 (351)
Q Consensus       106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------  168 (351)
                      ++..+...+..+-+.++..-      ++.+...--.+..++...|++++|.++|.+... |+.                 
T Consensus       818 l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence            34445555555555443332      233444444556777888888888888876421 110                 


Q ss_pred             ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 018743          169 ------ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV----VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK  238 (351)
Q Consensus       169 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  238 (351)
                            .-..-|..++..+.+.+.++.+.+.-....+.....+.    ..|..+...+...|++++|...+-.+..... 
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-  969 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-  969 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred             cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence                  01123556666677777777777666555443211111    2466677777777777777777766655432 


Q ss_pred             ccHHHHHHHHHHHHhcCCH------------hHHHHHHHHhh-hc-CCccCHHhHHHHHHHHHhcCCHHHHHH
Q 018743          239 PNSITYCSLVSAYSKAGLI------------MKVDSILRQVE-NS-DVILDTPFFNCIISAYGQAGDVEKMGE  297 (351)
Q Consensus       239 ~~~~~~~~l~~~~~~~g~~------------~~a~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~  297 (351)
                       -...+..|+..++..|..            ++..+++..-. .. .+...+..|..|-.-+...|++..|-.
T Consensus       970 -r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~ 1041 (1139)
T 4fhn_B          970 -KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAA 1041 (1139)
T ss_dssp             -CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHH
T ss_pred             -HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHH
Confidence             234455566555554443            33333333211 11 112122345555555666666655544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.76  E-value=2.9  Score=40.12  Aligned_cols=193  Identities=6%  Similarity=-0.037  Sum_probs=121.5

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C----------------
Q 018743          142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR----F----------------  201 (351)
Q Consensus       142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------------  201 (351)
                      ++..+...+..+-+.++...     .+.+...--.+..++...|++++|...|.+....    .                
T Consensus       818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            44445555666555554433     2334444456778899999999999999764211    0                


Q ss_pred             --CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccC
Q 018743          202 --FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS----ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD  275 (351)
Q Consensus       202 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  275 (351)
                        ...-..-|..++..+.+.+.++.+.++-....+...+-+.    ..|..+.+.+...|++++|...+-.+.....  -
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r  970 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K  970 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence              0011234677888888999999999888877764322221    2578899999999999999999987766543  3


Q ss_pred             HHhHHHHHHHHHhcCCHHHH------------HHHHHHHH-hc-CCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 018743          276 TPFFNCIISAYGQAGDVEKM------------GELFLTMK-ER-HCVPDNITFATMIQAYNALGMTEAA-QNLENKMIAM  340 (351)
Q Consensus       276 ~~~~~~l~~~~~~~g~~~~a------------~~~~~~~~-~~-~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~  340 (351)
                      ...+..|+..++..|..+.-            .+++..-. .. .....+.-|..|-.-+...|++-.| .-+|+.+.+.
T Consensus       971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B          971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence            56777888877777665443            33333221 11 1122233456666666677776544 5666666655


Q ss_pred             c
Q 018743          341 K  341 (351)
Q Consensus       341 ~  341 (351)
                      +
T Consensus      1051 ~ 1051 (1139)
T 4fhn_B         1051 I 1051 (1139)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=94.67  E-value=0.36  Score=30.22  Aligned_cols=86  Identities=14%  Similarity=0.093  Sum_probs=45.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 018743            8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI   87 (351)
Q Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   87 (351)
                      ...++|..+-+.+...+.  ...+--.-+..+...|++++|..+.+.+.     .||...|..|-.  .+.|-.+++...
T Consensus        20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~r   90 (115)
T 2uwj_G           20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCE--WHLGLGAALDRR   90 (115)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHH
Confidence            345666666666665432  11111122335566777777766554433     566666655543  356666666666


Q ss_pred             HHHHHHcCCCCCHhHH
Q 018743           88 LAEMSYLGIECSAVTY  103 (351)
Q Consensus        88 ~~~~~~~~~~~~~~~~  103 (351)
                      +.++..+| .|....|
T Consensus        91 L~~la~sg-~p~~q~F  105 (115)
T 2uwj_G           91 LAGLGGSS-DPALADF  105 (115)
T ss_dssp             HHHHHTCS-SHHHHHH
T ss_pred             HHHHHhCC-CHHHHHH
Confidence            66666655 3343333

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.54  E-value=2.9  Score=38.62  Aligned_cols=260  Identities=8%  Similarity=-0.065  Sum_probs=136.9

Q ss_pred             HhccCChHHHHHHHHHhhccC-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHhHHHHHHHHH
Q 018743           39 YGQSGLLDEAFSTINDMKSVS-DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI-------ECSAVTYNTIIDGY  110 (351)
Q Consensus        39 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~  110 (351)
                      ....|+.++++.++....... .-.+....=..+.-+....|..+++..++.......-       .+....-..+.-++
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            445677777777776655311 1112222223333345566665677777776654321       01122222233333


Q ss_pred             hhcCC-hHHHHHHHHHHHhcCCCCCCHh--HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018743          111 GKAKK-FEEMESSFSAMVESGGCHPDIF--TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY  187 (351)
Q Consensus       111 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  187 (351)
                      +-.|. -+++.+.+..+....  .+...  +-.++...+.-.|+.+....++..+.+.. ..+..-+..+.-++...|+.
T Consensus       464 a~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~  540 (963)
T 4ady_A          464 AAMGSANIEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ  540 (963)
T ss_dssp             HSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred             HhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence            33332 245566666665532  11111  12233444567788888888887766532 22222233333444577888


Q ss_pred             HHHHHHHHHHHHcCCCCCHHhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHH
Q 018743          188 DKMRSVMDFMQKRFFFPTVVTYN--IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR  265 (351)
Q Consensus       188 ~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  265 (351)
                      +.+..+++.+... ..|....-.  .+.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.++++
T Consensus       541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~  618 (963)
T 4ady_A          541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ  618 (963)
T ss_dssp             GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred             HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence            8888888887764 222222222  23345677888877777888887652 3333333344444555677777777777


Q ss_pred             HhhhcCCccCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 018743          266 QVENSDVILDTPFFNCIISAYGQAGDV-EKMGELFLTMKE  304 (351)
Q Consensus       266 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~  304 (351)
                      .+.+.+ .|....-..+.-+....|.. .++++++..+..
T Consensus       619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            666543 33444333444444444443 577788888764

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.44  E-value=0.39  Score=33.68  Aligned_cols=62  Identities=10%  Similarity=-0.009  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743           31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV-------YTYSILIKSCTKFHRFDLIEKILAEMS   92 (351)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~   92 (351)
                      ++-.-++.+...|.++.|+-+.+.+....+..|+.       .++..+.+++...+++..|...|++..
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            34444667778888888887777655433223331       245666777888888888888888864

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.13  E-value=0.4  Score=39.52  Aligned_cols=69  Identities=10%  Similarity=0.058  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh-----hcCCccCHHh
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE-----NSDVILDTPF  278 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~  278 (351)
                      ...++..+...|+++++...+..+.... +.+...+..++.++...|+..+|.+.|+...     +.|+.|...+
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            3445667777888888888888777664 6677788888888888888888888887754     3577776655

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.75  E-value=6.7e-05  Score=61.96  Aligned_cols=245  Identities=12%  Similarity=0.118  Sum_probs=157.6

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743           28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII  107 (351)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  107 (351)
                      .+.+|..|..+....++..+|++.|-+..       |+..|..++.++.+.|.++.-.+++...++..  .++.+=+.|+
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~-------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi  123 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI  123 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCCS-------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhCC-------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence            46788999999999999999988774332       33348889999999999999999988776653  3445556788


Q ss_pred             HHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc--------------------CC
Q 018743          108 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--------------------GV  167 (351)
Q Consensus       108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~  167 (351)
                      -+|++.++..+-.+++.        .|+..-...+..-|...|.++.|.-+|..+...                    .-
T Consensus       124 ~ayAk~~rL~elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK  195 (624)
T 3lvg_A          124 FALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK  195 (624)
T ss_dssp             HHHHTSCSSSTTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred             HHHHhhCcHHHHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999988766333221        234444455566666666666665555443211                    11


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 018743          168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL  247 (351)
Q Consensus       168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  247 (351)
                      ..++.||..+-.+|...+++.-|.-.--.+.-.     ......++..|-..|.+++.+.+++.-.... +.....|+.|
T Consensus       196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTEL  269 (624)
T 3lvg_A          196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL  269 (624)
T ss_dssp             CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHH
T ss_pred             cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHH
Confidence            345677888888888888877665543333322     1122345667788888888888888776443 5577888888


Q ss_pred             HHHHHhcCCHhHHHHHHHHhhh-cCCc------cCHHhHHHHHHHHHhcCCHHHHH
Q 018743          248 VSAYSKAGLIMKVDSILRQVEN-SDVI------LDTPFFNCIISAYGQAGDVEKMG  296 (351)
Q Consensus       248 ~~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~~~~~l~~~~~~~g~~~~a~  296 (351)
                      .-.|++- ++++..+.++..-. .+++      -....|..+.-.|.+..+++.|.
T Consensus       270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            8888775 45555554443221 1111      02334666666777777776554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.37  E-value=1.2  Score=34.16  Aligned_cols=121  Identities=9%  Similarity=0.059  Sum_probs=73.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc--CHHhHHHHHHHHHhcCC
Q 018743          214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL--DTPFFNCIISAYGQAGD  291 (351)
Q Consensus       214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~  291 (351)
                      ....+.|++++++.....-++.. |-|...-..+++.++-.|++++|.+-++...+..+..  ....|..+|++-     
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE-----   78 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA-----   78 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence            34567788888888888777764 5677777788888888888888888888777664431  122333333321     


Q ss_pred             HHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhcccCC
Q 018743          292 VEKMGELFLTMKERHCV-----PDNITFATMIQAYN--ALGMTEAAQNLENKMIAMKENSG  345 (351)
Q Consensus       292 ~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~  345 (351)
                           ..=.+...-+-.     ....-...++.+..  ..|+.++|.++-+++.+..|..+
T Consensus        79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~  134 (273)
T 1zbp_A           79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  134 (273)
T ss_dssp             -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence                 111122221111     12223345555544  46888888888888877765543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.22  E-value=1.8e-06  Score=70.97  Aligned_cols=242  Identities=11%  Similarity=0.102  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHH
Q 018743           66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA  145 (351)
Q Consensus        66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  145 (351)
                      ..|..|..+....+...+|++-|-+      .-|+..|..++....+.|.+++-.+.+.-.++.   ..++..=+.|+-+
T Consensus        55 ~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~a  125 (624)
T 3lvg_A           55 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFA  125 (624)
T ss_dssp             CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHH
T ss_pred             cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHH
Confidence            3488888888888877777665522      236677889999999999999999988877554   3455566789999


Q ss_pred             HhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------------CCCC
Q 018743          146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF--------------------FFPT  205 (351)
Q Consensus       146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~  205 (351)
                      |++.++..+..+++.       .|+..-...+.+-|...|.++.|.-+|..+....                    -..+
T Consensus       126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns  198 (624)
T 3lvg_A          126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS  198 (624)
T ss_dssp             HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred             HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999998776544332       3555555667777777777777776665443211                    1236


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743          206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA  285 (351)
Q Consensus       206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  285 (351)
                      +.||..+-.+|...+.+.-|.-.--.++-   .|  .-...++..|-..|.+++.+.+++...... .....+|+.|.-.
T Consensus       199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL  272 (624)
T 3lvg_A          199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL  272 (624)
T ss_dssp             SCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence            67888888888888877766544333332   11  123456777888899999888888877543 2367788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743          286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK  336 (351)
Q Consensus       286 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  336 (351)
                      |++- +.++..+.++..-.   +   .-.-.++++|.+..-|.++.-++..
T Consensus       273 YsKY-~PeKlmEHlklf~s---r---iNipKviracE~ahLW~ElvfLY~~  316 (624)
T 3lvg_A          273 YSKF-KPQKMREHLELFWS---R---VNIPKVLRAAEQAHLWAELVFLYDK  316 (624)
T ss_dssp             HHSS-CTTHHHHHHTTSSS---S---SCCTTTHHHHTTTTCHHHHHHHHHH
T ss_pred             HHhc-CHHHHHHHHHHHHH---h---ccHHHHHHHHHHHhhHHHHHHHHhc
Confidence            8876 44444444433221   1   1123478899999999998877653

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.15  E-value=4.2  Score=35.79  Aligned_cols=309  Identities=8%  Similarity=-0.007  Sum_probs=154.7

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 018743            6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE   85 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   85 (351)
                      +.|+++.+.++...+...-+. .-..|..+...+ .....++...++.+-..   .+.....-...+..+.+.+++....
T Consensus        18 ~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~---~p~~~~Lr~~~l~~l~~~~~w~~~l   92 (618)
T 1qsa_A           18 DNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPT---LPPARTLQSRFVNELARREDWRGLL   92 (618)
T ss_dssp             HTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHhCCCHHHHH
Confidence            456666666655544322111 122333333222 22245555555554332   1222233345556677778877766


Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHH--HHHHHHHHH
Q 018743           86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK--MEKWYNEFN  163 (351)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~  163 (351)
                      ..+..     .+.+...-.....+....|+..+|......+-..+...|  ..+..++..+.+.|....  ...-++.+.
T Consensus        93 ~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p--~~c~~l~~~~~~~g~lt~~~~~~R~~~al  165 (618)
T 1qsa_A           93 AFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP--NACDKLFSVWRASGKQDPLAYLERIRLAM  165 (618)
T ss_dssp             HHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC--THHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence            64432     244555555566777788888777777777655543333  346677777776554432  222222222


Q ss_pred             hcC-----------CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---hHHHHHHHHHhcCCHHHHHHH
Q 018743          164 LMG-----------VKADIQ-TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV---TYNIVIETFGKAGHIEKMEEY  228 (351)
Q Consensus       164 ~~~-----------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~  228 (351)
                      ..|           ++++.. ....++....   ++..+.....   .  ..++..   .+...+.-+.+ .+++.|...
T Consensus       166 ~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~---~--~~~~~~~~~~~~~~~~rlar-~d~~~A~~~  236 (618)
T 1qsa_A          166 KAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR---T--TGATDFTRQMAAVAFASVAR-QDAENARLM  236 (618)
T ss_dssp             HTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHH-HCHHHHHHH
T ss_pred             HCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHh---c--cCCChhhHHHHHHHHHHHHh-cCHHHHHHH
Confidence            222           111111 1111111111   1111111110   0  112222   11112222333 378889999


Q ss_pred             HHHHHHcCCCccHHHH----HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          229 FKKMKHRGMKPNSITY----CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      +....+.. ..+....    ..+.......+...++...+.......  .+.....-.+....+.|+++.|...|+.|..
T Consensus       237 ~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~  313 (618)
T 1qsa_A          237 IPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPM  313 (618)
T ss_dssp             HHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT
T ss_pred             HHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccc
Confidence            88876543 2333322    233333334453445556665544332  2333444455555678999999999988865


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743          305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA  339 (351)
Q Consensus       305 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  339 (351)
                      ... ....-.--+.+++...|+.++|..+|+++..
T Consensus       314 ~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          314 EAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             TGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            321 1233334456678889999999999988764

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.87  E-value=1.4  Score=29.54  Aligned_cols=70  Identities=7%  Similarity=-0.059  Sum_probs=29.0

Q ss_pred             cCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743          274 LDTPFFNCIISAYGQAGD---VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN  343 (351)
Q Consensus       274 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  343 (351)
                      |++.+--.+..++.+..+   ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|++..+.+++..|.
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~  110 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  110 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            344444444444444433   2234444444443321111223333444444555555555555554444443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.65  E-value=0.21  Score=35.04  Aligned_cols=114  Identities=7%  Similarity=-0.025  Sum_probs=66.6

Q ss_pred             ccccCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHH
Q 018743            3 MLGKCKQPEQASLLFEVMLSDG-LKPS-------VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIK   73 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~   73 (351)
                      .+...|.++.|+-+.+.+.... ..|+       ..++..+.+++...|++.+|...|++..+....-+... ++..+. 
T Consensus        29 ~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~-  107 (167)
T 3ffl_A           29 DMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG-  107 (167)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------------
T ss_pred             HHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc-
Confidence            3456788888888887755431 1222       23667778899999999999999999755322222111 111110 


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743           74 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus        74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                      .  . .....         ......+...--.+..||.+.+++++|+.+++.+..+
T Consensus       108 ~--~-ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k  151 (167)
T 3ffl_A          108 N--S-ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR  151 (167)
T ss_dssp             ---------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred             c--c-CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence            0  0 00000         0112334455556888899999999999999887554

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=92.23  E-value=1.4  Score=27.88  Aligned_cols=50  Identities=4%  Similarity=0.008  Sum_probs=28.9

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743           80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus        80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                      |.-+..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.+..+
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            33444555555555555666666666666666666666666666665544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=90.67  E-value=2.7  Score=32.23  Aligned_cols=51  Identities=14%  Similarity=0.046  Sum_probs=23.2

Q ss_pred             ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 018743            5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK   56 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~   56 (351)
                      .+.|++++|+.....-++..+. |...-..+++.+|-.|++++|.+-++...
T Consensus         8 l~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a   58 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSI   58 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3444444444444444444333 44444444444444444444444444443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.65  E-value=2.8  Score=28.50  Aligned_cols=70  Identities=7%  Similarity=-0.093  Sum_probs=34.5

Q ss_pred             CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743          203 FPTVVTYNIVIETFGKAGH---IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV  272 (351)
Q Consensus       203 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  272 (351)
                      .|+..+--.+..++.+..+   ..+++.+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+.+..+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP  108 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  108 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence            3444444444445555443   234555555555543111223334445555666666666666666655543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=90.15  E-value=3  Score=28.00  Aligned_cols=63  Identities=6%  Similarity=0.025  Sum_probs=42.4

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 018743           80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS  144 (351)
Q Consensus        80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  144 (351)
                      |.-+..+-++.+....+.|++.+....+++|-+.+++..|.++|+.+..+-  .+...+|..+++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence            444556666666667777777777777888888888888888887776663  333445655553

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=89.89  E-value=2.5  Score=26.60  Aligned_cols=88  Identities=9%  Similarity=0.032  Sum_probs=53.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 018743           78 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK  157 (351)
Q Consensus        78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  157 (351)
                      ....++|..+-+.+...+.  ...+-..-+..+...|++++|..+.+..     +.||...|.++..  .+.|-.+++..
T Consensus        19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~   89 (115)
T 2uwj_G           19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDR   89 (115)
T ss_dssp             TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHH
Confidence            3456777777777766542  2222222344566778888887766554     4677777766543  46677777777


Q ss_pred             HHHHHHhcCCCCCHHHHH
Q 018743          158 WYNEFNLMGVKADIQTLN  175 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~  175 (351)
                      .+.++...| .|....|.
T Consensus        90 rL~~la~sg-~p~~q~Fa  106 (115)
T 2uwj_G           90 RLAGLGGSS-DPALADFA  106 (115)
T ss_dssp             HHHHHHTCS-SHHHHHHH
T ss_pred             HHHHHHhCC-CHHHHHHH
Confidence            777776665 44444443

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=89.60  E-value=2.6  Score=26.52  Aligned_cols=87  Identities=13%  Similarity=0.055  Sum_probs=51.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 018743           78 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK  157 (351)
Q Consensus        78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  157 (351)
                      ....++|..+-+.+...+.  ...+-..-+..+...|++++|..+.+..     +.||...|.++..  .+.|-.+++..
T Consensus        20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~   90 (116)
T 2p58_C           20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALES   90 (116)
T ss_dssp             TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHH
Confidence            3456777777777666542  2222222234566778888887776654     4677777766543  45666777777


Q ss_pred             HHHHHHhcCCCCCHHHH
Q 018743          158 WYNEFNLMGVKADIQTL  174 (351)
Q Consensus       158 ~~~~~~~~~~~~~~~~~  174 (351)
                      .+.++...| .|....|
T Consensus        91 rL~~la~sg-~p~~q~F  106 (116)
T 2p58_C           91 RLNRLARSQ-DPRIQTF  106 (116)
T ss_dssp             HHHHHTTCC-CHHHHHH
T ss_pred             HHHHHHhCC-CHHHHHH
Confidence            776766655 4444444

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.32  E-value=5.6  Score=33.23  Aligned_cols=98  Identities=5%  Similarity=-0.041  Sum_probs=50.7

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHhcC-CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHh---cCCCCCHHH--HH
Q 018743          102 TYNTIIDGYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL---MGVKADIQT--LN  175 (351)
Q Consensus       102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~--~~  175 (351)
                      +...+...|.+.|+++.|.+.+.++.... +...-...+-..+..+...+++..+...+.+...   .+-.++...  ..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            45556666667777777777776665432 1122233455566666666777776666666532   121222111  11


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          176 ILTKSYGRAGMYDKMRSVMDFMQK  199 (351)
Q Consensus       176 ~l~~~~~~~~~~~~a~~~~~~~~~  199 (351)
                      .-...+...+++..|...|-+...
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhc
Confidence            111223345666666666655444

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=86.87  E-value=10  Score=30.01  Aligned_cols=21  Identities=10%  Similarity=0.112  Sum_probs=16.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHh
Q 018743          320 AYNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       320 ~~~~~g~~~~A~~~~~~~~~~  340 (351)
                      -|...|+...|..+++...+.
T Consensus       197 ~yL~l~n~~~A~~~~~~f~~~  217 (312)
T 2wpv_A          197 NYLFISNISFAHESKDIFLER  217 (312)
T ss_dssp             HHHHTTBHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHH
Confidence            466789999999988877643

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=86.29  E-value=11  Score=29.83  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=12.0

Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHh
Q 018743          160 NEFNLMGVKADIQTLNILTKSYGR  183 (351)
Q Consensus       160 ~~~~~~~~~~~~~~~~~l~~~~~~  183 (351)
                      +-+.+.+.+++......++..+..
T Consensus        81 ev~~~~~~~~~~~~~~rl~~l~~~  104 (312)
T 2wpv_A           81 EVYDLAEVKVDDISVARLVRLIAE  104 (312)
T ss_dssp             HHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHH
Confidence            333444555555555555555444

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.94  E-value=12  Score=31.17  Aligned_cols=97  Identities=6%  Similarity=-0.121  Sum_probs=53.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHhH--H
Q 018743          138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVK--ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR---FFFPTVVTY--N  210 (351)
Q Consensus       138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~  210 (351)
                      +...+...|.+.|+++.|.+.+.++......  .-...+...++.+...+++..+...+.++...   +..|+...-  .
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            4556677777777777777777777653222  22445566667777777777777777665432   222222110  1


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          211 IVIETFGKAGHIEKMEEYFKKMKH  234 (351)
Q Consensus       211 ~l~~~~~~~~~~~~a~~~~~~~~~  234 (351)
                      .-...+...+++..|...|-+...
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhc
Confidence            111222345666666666655543

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=84.42  E-value=9.8  Score=27.70  Aligned_cols=56  Identities=13%  Similarity=0.116  Sum_probs=38.2

Q ss_pred             CCHhHHHHHHHHhhhcCCccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018743          255 GLIMKVDSILRQVENSDVILD-TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD  310 (351)
Q Consensus       255 g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~  310 (351)
                      +.......+|..|...++-.. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus        93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~  149 (202)
T 3esl_A           93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY  149 (202)
T ss_dssp             TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred             cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence            346677777777776655432 44566777777777888888888887777766663

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=82.55  E-value=17  Score=29.03  Aligned_cols=81  Identities=9%  Similarity=0.019  Sum_probs=42.9

Q ss_pred             cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ  319 (351)
Q Consensus       240 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  319 (351)
                      ++.....+...|.+.+++.+|+..|-  .  +-.+.+..+..++.-+...+...++              +... ...+-
T Consensus       135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfi-aRaVL  195 (336)
T 3lpz_A          135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA--------------PLYC-ARAVL  195 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHH-HHHHH
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHH-HHHHH
Confidence            56666777788888888888777763  2  2222234554444333333221111              1111 12223


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 018743          320 AYNALGMTEAAQNLENKMIA  339 (351)
Q Consensus       320 ~~~~~g~~~~A~~~~~~~~~  339 (351)
                      -|...++...|..+++...+
T Consensus       196 ~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          196 PYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHH
Confidence            36667777777776666554

>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A

Probab=81.25  E-value=18  Score=28.51  Aligned_cols=79  Identities=15%  Similarity=0.230  Sum_probs=48.6

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD--VEKMGELFLTMKERHCVPDNITFATMIQAY  321 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  321 (351)
                      ...++.-|...|+.++|.+.++++...... ...+...+..++-+.++  .+...+++..+.+.|+-+.......+.+.+
T Consensus       169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl  247 (307)
T 2zu6_B          169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY  247 (307)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence            467888888999999999999998743222 22333344444444333  455678888888777665544444444443


Q ss_pred             HH
Q 018743          322 NA  323 (351)
Q Consensus       322 ~~  323 (351)
                      ..
T Consensus       248 ~~  249 (307)
T 2zu6_B          248 NE  249 (307)
T ss_dssp             HH
T ss_pred             Hh
Confidence            33

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}

Probab=80.63  E-value=21  Score=28.86  Aligned_cols=212  Identities=12%  Similarity=0.085  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN--IEKMEKWYNEFNLMGVKADIQTLNILTK  179 (351)
Q Consensus       102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~  179 (351)
                      ....++.-|...++.++|...++++. ....  .......++......++  -+.+-.++..+.. ++-+.......+..
T Consensus        56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~-~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~  131 (358)
T 3eiq_C           56 TLTPIIQEYFEHGDTNEVAEMLRDLN-LGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDK  131 (358)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTT-CCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHhC-Cchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence            34667888999999999999999873 2111  22233344443333332  2345555565553 44444444444444


Q ss_pred             HHHhcCCH----HHHHHHHHH----HHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH---HH-------------
Q 018743          180 SYGRAGMY----DKMRSVMDF----MQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KH-------------  234 (351)
Q Consensus       180 ~~~~~~~~----~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~-------------  234 (351)
                      .+....+.    ..|..++-.    +...+ ++|... .....    .. ..+.+.+.++..   ..             
T Consensus       132 lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l-~~~~~----~~-~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG  205 (358)
T 3eiq_C          132 LLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYI-DSYKG----TV-DCVQARAALDKATVLLSMSKGGKRKDSVWG  205 (358)
T ss_dssp             HHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTT-GGGC--------CCHHHHHHHHHHHHHHTC---------CCC
T ss_pred             HHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHH-HHHhh----cc-cchHHHHHHHHHHHHHhccchHHHHHHhcC
Confidence            44333321    123332222    22222 222211 11000    00 111222222221   11             


Q ss_pred             --cCCCccH---HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhcCC
Q 018743          235 --RGMKPNS---ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD--VEKMGELFLTMKERHC  307 (351)
Q Consensus       235 --~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~  307 (351)
                        .+..|..   .....++.-|...|+.++|...++++...... ...+...+..++-+.++  .+...+++..+...|+
T Consensus       206 ~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl  284 (358)
T 3eiq_C          206 SGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST  284 (358)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence              0222322   23578888899999999999999998743222 23333444444444333  4567788888888776


Q ss_pred             CCCHHHHHHHHHHHHHc
Q 018743          308 VPDNITFATMIQAYNAL  324 (351)
Q Consensus       308 ~p~~~~~~~l~~~~~~~  324 (351)
                      -+.......+.+.+...
T Consensus       285 ls~~q~~~Gf~~vl~~l  301 (358)
T 3eiq_C          285 ITIDQMKRGYERIYNEI  301 (358)
T ss_dssp             SCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            65555555554444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.96
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.8
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.8
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.56
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.54
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.54
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.53
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.51
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.48
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.43
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.42
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.41
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.4
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.12
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.05
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.04
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.02
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.93
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.92
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.9
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.89
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.86
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.84
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.81
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.76
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.7
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.69
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.56
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.55
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.48
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.47
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.47
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.46
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.42
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.41
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.39
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.38
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.36
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.35
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.33
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.32
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.25
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.14
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.14
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.14
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.11
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.86
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.86
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.6
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.28
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.05
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.87
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.68
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.4
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	95.87
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.63
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.45
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	91.38
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.37
d1bpoa1	157	Clathrin heavy-chain linker domain {Rat (Rattus no	85.01
d1bpoa1	157	Clathrin heavy-chain linker domain {Rat (Rattus no	80.74

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-25  Score=182.54  Aligned_cols=332  Identities=11%  Similarity=0.029  Sum_probs=275.2

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      +.+.|++++|.+.++++.+..+. ++.++..+..++.+.|++++|+..|++..+..  +.+..+|..+..++...|++++
T Consensus         9 ~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~~~   85 (388)
T d1w3ba_           9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhccccc
Confidence            45779999999999999988655 78999999999999999999999999998753  4467789999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHH----------------------------------HHhhcCChHHHHHHHHHHHhc
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIID----------------------------------GYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~----------------------------------~~~~~~~~~~a~~~~~~~~~~  129 (351)
                      |...+....+... .+.........                                  .....+....+...+......
T Consensus        86 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T d1w3ba_          86 AIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence            9999999887652 23322222222                                  223344455555666655554


Q ss_pred             CCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 018743          130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY  209 (351)
Q Consensus       130 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  209 (351)
                        .+.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++........ +...+
T Consensus       165 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~  240 (388)
T d1w3ba_         165 --QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVH  240 (388)
T ss_dssp             --CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHH
T ss_pred             --CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHH
Confidence              24556678888899999999999999999988764 456778899999999999999999999998886544 67778


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc
Q 018743          210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA  289 (351)
Q Consensus       210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  289 (351)
                      ..+...+...|++++|...|++..+.. +-+..++..+...+...|++++|...++......+. +...+..+...+...
T Consensus       241 ~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  318 (388)
T d1w3ba_         241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHHHHHHHC
Confidence            888999999999999999999998874 556788999999999999999999999998887654 788899999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       290 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      |++++|++.|++..+.. +-+..++..+..+|.+.|++++|...|+++++.+|....
T Consensus       319 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  374 (388)
T d1w3ba_         319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD  374 (388)
T ss_dssp             TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999998752 335678889999999999999999999999998887544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.8e-22  Score=163.42  Aligned_cols=312  Identities=10%  Similarity=0.057  Sum_probs=258.9

Q ss_pred             ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHH----------
Q 018743            3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI----------   72 (351)
Q Consensus         3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----------   72 (351)
                      +|.+.|++++|...|+.+.+..+. +..+|..+..++.+.|++++|++.+....+...  .+........          
T Consensus        42 ~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  118 (388)
T d1w3ba_          42 IHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDME  118 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcccccccccccccccccc--cccccccccccccccccccc
Confidence            466789999999999999988765 789999999999999999999999999887432  2222222222          


Q ss_pred             ------------------------HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 018743           73 ------------------------KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE  128 (351)
Q Consensus        73 ------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  128 (351)
                                              ......+....+...+....... +.+...+..+...+...|++++|...+++..+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  197 (388)
T d1w3ba_         119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT  197 (388)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHH
Confidence                                    22223344555555565555543 44677888888999999999999999999988


Q ss_pred             cCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 018743          129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT  208 (351)
Q Consensus       129 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  208 (351)
                      ..  +.+..++..+...+...|++++|...++.....+ +.+...+..+...+.+.|++++|...|++..+..+. +...
T Consensus       198 ~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~  273 (388)
T d1w3ba_         198 LD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDA  273 (388)
T ss_dssp             HC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHH
T ss_pred             hC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence            73  5567789999999999999999999999988765 566778888999999999999999999998886443 6788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ  288 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (351)
                      +..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+..+. +..++..+..++.+
T Consensus       274 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~  351 (388)
T d1w3ba_         274 YCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            8999999999999999999999988874 678888999999999999999999999999887665 67889999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCC
Q 018743          289 AGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGM  326 (351)
Q Consensus       289 ~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~  326 (351)
                      .|++++|++.|+++.+.  .| +...|..+..+|.+.|+
T Consensus       352 ~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         352 QGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred             cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999875  44 47789999999988875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1e-16  Score=128.58  Aligned_cols=255  Identities=9%  Similarity=0.008  Sum_probs=121.0

Q ss_pred             HHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChH
Q 018743           38 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE  117 (351)
Q Consensus        38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  117 (351)
                      .+.+.|++++|+..|+++.+..  +-+..+|..+..++...|++++|...+++..+.. |-+...+..+..+|...|+++
T Consensus        28 ~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccc
Confidence            3444444444444444444321  2223344444444444444444444444444432 223344444444444444444


Q ss_pred             HHHHHHHHHHhcCCC-------------CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHh
Q 018743          118 EMESSFSAMVESGGC-------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGR  183 (351)
Q Consensus       118 ~a~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~  183 (351)
                      +|.+.+++.......             ..+.......+..+...+.+.++...+.+..... -..+..++..+...+..
T Consensus       105 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~  184 (323)
T d1fcha_         105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  184 (323)
T ss_dssp             HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            444444443322100             0001111112222333444555555555554322 12334455555666666


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHH
Q 018743          184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI  263 (351)
Q Consensus       184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  263 (351)
                      .|++++|...++......+. +...|..+...+...|++++|.+.+++..+.. +-+..++..+..+|.+.|++++|+..
T Consensus       185 ~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~  262 (323)
T d1fcha_         185 SGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEH  262 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            66666666666665554322 45556666666666666666666666665542 33455566666666666666666666


Q ss_pred             HHHhhhc----------CCccCHHhHHHHHHHHHhcCCHHHHHH
Q 018743          264 LRQVENS----------DVILDTPFFNCIISAYGQAGDVEKMGE  297 (351)
Q Consensus       264 ~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~a~~  297 (351)
                      |++..+.          ........|..+-.++...|+.+.+..
T Consensus       263 ~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         263 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            6655431          111233445555556666666555443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.9e-17  Score=129.96  Aligned_cols=249  Identities=8%  Similarity=-0.025  Sum_probs=149.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCC
Q 018743           71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG  150 (351)
Q Consensus        71 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  150 (351)
                      ....+.+.|++++|...|+++.+.. |.+..+|..+..++...|++++|...|++..+..  +.+...+..+...+...|
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--cccccccccccccccccc
Confidence            4455778888888888888888775 4467788888888888888888888888887763  456667777788888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743          151 NIEKMEKWYNEFNLMGVKADIQTL-NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF  229 (351)
Q Consensus       151 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  229 (351)
                      ++++|.+.++......  |+.... ........                    ..+.......+..+...+.+.++...+
T Consensus       102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~  159 (323)
T d1fcha_         102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELF  159 (323)
T ss_dssp             CHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhc--cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence            8888888888876532  221110 00000000                    000000011111222334455555665


Q ss_pred             HHHHHcC-CCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018743          230 KKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV  308 (351)
Q Consensus       230 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  308 (351)
                      .+..... -.++...+..+...+...|++++|...+++.....+. +...|..+..++...|++++|++.|+++.+.. +
T Consensus       160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p  237 (323)
T d1fcha_         160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-P  237 (323)
T ss_dssp             HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-h
Confidence            5555432 1224455566666666666666666666666655444 55566666666666677777777666666542 2


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          309 PDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       309 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      -+...|..+..+|.+.|++++|+..|+++++..|....
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence            23555666666666677777777777766666665443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.4e-12  Score=99.04  Aligned_cols=214  Identities=9%  Similarity=0.022  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcC-ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHH
Q 018743           67 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISA  145 (351)
Q Consensus        67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  145 (351)
                      .|+.+...+.+.+.+++|+.+++++++.. |-+..+|+....++...| ++++|+..+++.++..  +-+..+|..+...
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~~  121 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHhHH
Confidence            34444444555555566666666555554 334555555555555544 3556666665555542  4445555555555


Q ss_pred             HhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----
Q 018743          146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----  221 (351)
Q Consensus       146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----  221 (351)
                      +.+.|++++|+..++++.+.. +.+...|..+...+.+.|++++|...++.+.+..+. +...|+.+...+...+.    
T Consensus       122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence            555566666666666555543 344555555555566666666666666665554333 44455544444443333    


Q ss_pred             --HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-CHHhHHHHHHHHH
Q 018743          222 --IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYG  287 (351)
Q Consensus       222 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~  287 (351)
                        +++|+..+....+.. +.+...|..+...+... ..+++...++...+..+.+ +...+..++..|.
T Consensus       200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence              456666666666653 33555555555444333 3455666666555443332 2334444444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.3e-12  Score=99.85  Aligned_cols=230  Identities=6%  Similarity=-0.030  Sum_probs=181.7

Q ss_pred             HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743          100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILT  178 (351)
Q Consensus       100 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~  178 (351)
                      ..+++.+...+.+.+.+++|+++++++++..  |-+..+|+....++...| ++++|+..++...... +-+..+|..+.
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~  119 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence            4567777788889999999999999999984  667778999988888876 5899999999998865 56788999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--
Q 018743          179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL--  256 (351)
Q Consensus       179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--  256 (351)
                      ..+.+.|++++|+..++.+.+..+. +...|..+...+...|++++|+..++++++.+ +-+...|+.+...+.+.+.  
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc
Confidence            9999999999999999999987554 78899999999999999999999999999985 5577788887777766665  


Q ss_pred             ----HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHc--CCHHH
Q 018743          257 ----IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNAL--GMTEA  329 (351)
Q Consensus       257 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--g~~~~  329 (351)
                          +++|...+..+.+..+. +...|+.+...+. ....+++.+.++...+....+ +...+..++..|...  +..+.
T Consensus       198 ~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~  275 (315)
T d2h6fa1         198 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN  275 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             hhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence                57899999998888766 7788877766654 445688888888887653322 345566677766543  33333


Q ss_pred             HHHHHHH
Q 018743          330 AQNLENK  336 (351)
Q Consensus       330 A~~~~~~  336 (351)
                      +...+++
T Consensus       276 ~~~~~~k  282 (315)
T d2h6fa1         276 KEDILNK  282 (315)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.1e-11  Score=98.03  Aligned_cols=188  Identities=11%  Similarity=0.059  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743          153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM  232 (351)
Q Consensus       153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  232 (351)
                      ++|..+|++..+...+.+...+...+..+...|+.+.|..+|+.+...........|...+..+.+.|+.+.|.++|+++
T Consensus        81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a  160 (308)
T d2onda1          81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            44455555544433233344444445555555555555555555544332222334455555555555555555555555


Q ss_pred             HHcCCCccHHHHHHHHHH-HHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCC
Q 018743          233 KHRGMKPNSITYCSLVSA-YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVPD  310 (351)
Q Consensus       233 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~  310 (351)
                      .+.+ +.+...|...+.. +...|+.+.|..+|+.+.+..+. ++..|...+..+...|+++.|..+|++..... ..|+
T Consensus       161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence            5442 2222333322222 22234555555555555544332 44555555555555555555555555554432 1221


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743          311 --NITFATMIQAYNALGMTEAAQNLENKMIAMKE  342 (351)
Q Consensus       311 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  342 (351)
                        ...|...+.--...|+.+.+..+++++.+.-|
T Consensus       239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence              22444444444455555555555555544443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2.5e-11  Score=97.82  Aligned_cols=275  Identities=9%  Similarity=-0.010  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC---CHh
Q 018743           30 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD---VYTYSILIKSCTKFHRFDLIEKILAEMSYLGI--EC---SAV  101 (351)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~---~~~  101 (351)
                      .........+...|++++|++++++..+...-.++   ...+..+...+...|++++|...+++..+...  ..   ...
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            33444455666777777777777776653211111   23455566667777777777777776654311  10   123


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCCC---CHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC----CCCH
Q 018743          102 TYNTIIDGYGKAKKFEEMESSFSAMVESG---GCHP---DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV----KADI  171 (351)
Q Consensus       102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~  171 (351)
                      .+..+...+...|++..+...+.......   +...   ....+..+...+...|+++.+...+........    ....
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            34445566666777777777776654311   0111   112344455666666777777776666544221    1223


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---ccHH
Q 018743          172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRF----FFP--TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK---PNSI  242 (351)
Q Consensus       172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~  242 (351)
                      ..+......+...++...+...+.......    ..+  ....+......+...|++++|...+.........   ....
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  252 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  252 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence            344445555666666666666665543311    111  1123344445555666666666666654433211   1233


Q ss_pred             HHHHHHHHHHhcCCHhHHHHHHHHhhh----cCCcc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          243 TYCSLVSAYSKAGLIMKVDSILRQVEN----SDVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      .+..+...+...|++++|...++.+..    .+..| ....+..+..++...|++++|.+.+++..+
T Consensus       253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            444556666666666666666665542    12222 223455556666666666666666666543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=2.4e-10  Score=91.95  Aligned_cols=266  Identities=11%  Similarity=0.031  Sum_probs=169.9

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc----HHHHHHHHHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPS----VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD----VYTYSILIKSC   75 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~   75 (351)
                      +...|++++|++++++..+..+..+    ..++..+..++...|++++|+..|++..+.....++    ...+..+...+
T Consensus        22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  101 (366)
T d1hz4a_          22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL  101 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            4567888888888888777643322    245666777888888888888888877653211122    23455556667


Q ss_pred             HhcCCHHHHHHHHHHHHHc----CCCC---CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCC---CCCCHhHHHHHHHH
Q 018743           76 TKFHRFDLIEKILAEMSYL----GIEC---SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG---CHPDIFTLNSMISA  145 (351)
Q Consensus        76 ~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~  145 (351)
                      ...|++..+...+......    +.+.   ....+..+...+...|+++.+...+........   .......+......
T Consensus       102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (366)
T d1hz4a_         102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC  181 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence            7788888888888776432    1111   123455566777788888888888887765431   11223345555666


Q ss_pred             HhcCCCHHHHHHHHHHHHhcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHHhHHHHHHHH
Q 018743          146 YGNSGNIEKMEKWYNEFNLMG--VKAD----IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF---PTVVTYNIVIETF  216 (351)
Q Consensus       146 ~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~  216 (351)
                      +...++...+...+.......  ....    ...+..+...+...|+++.|...+.........   .....+..+..++
T Consensus       182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~  261 (366)
T d1hz4a_         182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ  261 (366)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            777788888887776654321  1111    223455566777788888888888776543322   1234455567778


Q ss_pred             HhcCCHHHHHHHHHHHHH----cCCCcc-HHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743          217 GKAGHIEKMEEYFKKMKH----RGMKPN-SITYCSLVSAYSKAGLIMKVDSILRQVEN  269 (351)
Q Consensus       217 ~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  269 (351)
                      ...|++++|...++....    .+..|+ ...+..+...+...|++++|...+++..+
T Consensus       262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            888888888888887653    233333 34667777888888888888888877654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=5.5e-11  Score=93.86  Aligned_cols=189  Identities=8%  Similarity=-0.043  Sum_probs=140.3

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018743          114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV  193 (351)
Q Consensus       114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  193 (351)
                      +..++|..+|++.++.. .+.+...|...+....+.|+++.|..+|+.+..........+|...+..+.+.|+.+.|.++
T Consensus        78 ~~~~~a~~i~~ral~~~-~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          78 LFSDEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence            34577888888887642 34455677778888888888999999888887654333345678888888888889999999


Q ss_pred             HHHHHHcCCCCCHHhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743          194 MDFMQKRFFFPTVVTYNIVIE-TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV  272 (351)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  272 (351)
                      |+.+.+..+. +...|..... -+...|+.+.|..+|+.+.... +.+...+...+..+...|+++.|..+|++..+..+
T Consensus       157 ~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         157 FKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            9888776543 3333433333 2344678899999999988763 55678888888888899999999999999876543


Q ss_pred             -cc--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          273 -IL--DTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       273 -~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                       .|  ....|...+..-...|+.+.+.++++++.+.
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             22  2457888888878889999999999988764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=1.4e-11  Score=94.83  Aligned_cols=96  Identities=9%  Similarity=-0.081  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH
Q 018743           67 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY  146 (351)
Q Consensus        67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  146 (351)
                      +|..+..++.+.|++++|...|++..+.. |-++.+|..+..++.+.|++++|+..|+++.+..  +.+..++..+..++
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHHHH
Confidence            34444445555555555555555555543 3345555555555555555555555555555542  23334455555555


Q ss_pred             hcCCCHHHHHHHHHHHHhc
Q 018743          147 GNSGNIEKMEKWYNEFNLM  165 (351)
Q Consensus       147 ~~~~~~~~a~~~~~~~~~~  165 (351)
                      ...|++++|...++...+.
T Consensus       116 ~~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhh
Confidence            5555555555555555443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=4.3e-12  Score=101.68  Aligned_cols=275  Identities=6%  Similarity=-0.058  Sum_probs=188.9

Q ss_pred             HHHHHHHHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHH----------HhcCCHHHHHHHHHHHHHcCCCCCH
Q 018743           32 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSC----------TKFHRFDLIEKILAEMSYLGIECSA  100 (351)
Q Consensus        32 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~----------~~~~~~~~a~~~~~~~~~~~~~~~~  100 (351)
                      ...++......+..++|++++++..+.   .|+ ...|+..-..+          ...+++++|+.+++...+.. |.+.
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~  107 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSY  107 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcH
Confidence            344444444444558999999998874   344 34454333322          23445788888999888775 5577


Q ss_pred             hHHHHHHHHHhhcC--ChHHHHHHHHHHHhcCCCCCCHhHHHH-HHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018743          101 VTYNTIIDGYGKAK--KFEEMESSFSAMVESGGCHPDIFTLNS-MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL  177 (351)
Q Consensus       101 ~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  177 (351)
                      ..|..+..++...+  ++++|...++++.+..  +++...+.. ....+...+.+++|+..++.+...+ +-+...+..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l  184 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYR  184 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHH
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence            77777776666655  4789999999988773  555666543 4467777899999999999888765 5567788888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 018743          178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI  257 (351)
Q Consensus       178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  257 (351)
                      ...+.+.|++++|...+......    .+.. ......+...+..+++...+....... +++...+..+...+...|+.
T Consensus       185 ~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~  258 (334)
T d1dcea1         185 SCLLPQLHPQPDSGPQGRLPENV----LLKE-LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSE  258 (334)
T ss_dssp             HHHHHHHSCCCCSSSCCSSCHHH----HHHH-HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHhHHh----HHHH-HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhH
Confidence            88898988888776655543332    1111 122333455566677777777777654 44555666677777778888


Q ss_pred             hHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 018743          258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQAYN  322 (351)
Q Consensus       258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~  322 (351)
                      .+|...+.+..+..+. +..++..+..++...|++++|++.++++.+.  .|+ ...|..+...+.
T Consensus       259 ~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         259 LESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence            8999988888877654 6677888888999999999999999998875  454 345555544444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=3.5e-12  Score=102.18  Aligned_cols=264  Identities=6%  Similarity=-0.115  Sum_probs=193.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH----------HhhcCChHHHHHHHHHHHhcCCCCCCHhH
Q 018743           69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG----------YGKAKKFEEMESSFSAMVESGGCHPDIFT  138 (351)
Q Consensus        69 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  138 (351)
                      ..++......+..++|+.+++...+.. |-+...|+..-..          +...|++++|+..++.+.+..  +.+...
T Consensus        33 ~~~~~~~~~~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~~~  109 (334)
T d1dcea1          33 QAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGT  109 (334)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcHHH
Confidence            333333334445589999999998875 3355555443322          233456889999999998874  667777


Q ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 018743          139 LNSMISAYGNSG--NIEKMEKWYNEFNLMGVKADIQTLN-ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET  215 (351)
Q Consensus       139 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  215 (351)
                      |..+..++...+  +++++...+..+.... +++...+. .....+...+.++.|...++.+....+. +...|..+..+
T Consensus       110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~  187 (334)
T d1dcea1         110 WHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL  187 (334)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence            777777766655  5899999999998865 44555544 4556777889999999999998887654 78889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHH
Q 018743          216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM  295 (351)
Q Consensus       216 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  295 (351)
                      +...|++++|...+......  .|+.   ..+...+...+..+++...+.......+. +...+..++..+...|+..+|
T Consensus       188 ~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a  261 (334)
T d1dcea1         188 LPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELES  261 (334)
T ss_dssp             HHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHH
Confidence            99999988887666554443  1211   22334455667788888888887766543 555666777788888999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       296 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      ...+.+..+.. +.+...+..+..++...|++++|.+.++++++.+|..
T Consensus       262 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~  309 (334)
T d1dcea1         262 CKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  309 (334)
T ss_dssp             HHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence            99999888752 2245678888899999999999999999999998853

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=1.6e-11  Score=94.53  Aligned_cols=154  Identities=12%  Similarity=-0.018  Sum_probs=119.0

Q ss_pred             cCCCHHHHHHHHHHHHhCCCC-C--CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743            6 KCKQPEQASLLFEVMLSDGLK-P--SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD   82 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (351)
                      ...+.+.++.-++++...... +  ...+|..+..+|.+.|++++|++.|++..+..  +-+..+|..+..++.+.|+++
T Consensus        11 ~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~   88 (259)
T d1xnfa_          11 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD   88 (259)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHH
Confidence            345567777788888765321 1  34577788899999999999999999999853  456788999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 018743           83 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF  162 (351)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  162 (351)
                      +|...|+++.+.. |.+..++..+..++...|++++|.+.|++..+..  +.+......+...+.+.+..+....+....
T Consensus        89 ~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (259)
T d1xnfa_          89 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  165 (259)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            9999999999886 4577889999999999999999999999998874  445555444445555556555555555554


Q ss_pred             Hh
Q 018743          163 NL  164 (351)
Q Consensus       163 ~~  164 (351)
                      ..
T Consensus       166 ~~  167 (259)
T d1xnfa_         166 EK  167 (259)
T ss_dssp             HH
T ss_pred             hc
Confidence            44

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=2.7e-09  Score=83.14  Aligned_cols=165  Identities=10%  Similarity=0.020  Sum_probs=84.8

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHhcC---CCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CC-CCCHHHHHH
Q 018743          106 IIDGYGKAKKFEEMESSFSAMVESG---GCHP-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLM----GV-KADIQTLNI  176 (351)
Q Consensus       106 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~  176 (351)
                      ....|...+++++|.+.|.+..+..   +.++ -..+|..+..+|.+.|++++|.+.+++....    +. .....++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            3456777777777777777765421   1111 1235666677777777777777777665432    10 011233444


Q ss_pred             HHHHHHh-cCCHHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-----cH-HHH
Q 018743          177 LTKSYGR-AGMYDKMRSVMDFMQKR----FFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP-----NS-ITY  244 (351)
Q Consensus       177 l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~-~~~  244 (351)
                      +...|.. .|++++|...+.+..+.    +..+ ...++..+...+...|++++|...|+++.......     .. ..+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            4444433 46666666666654321    1111 12334555566666666666666666655432111     00 112


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743          245 CSLVSAYSKAGLIMKVDSILRQVENS  270 (351)
Q Consensus       245 ~~l~~~~~~~g~~~~a~~~~~~~~~~  270 (351)
                      ...+..+...|+++.|...+++..+.
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            23333444556666666666665544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=9.2e-09  Score=74.50  Aligned_cols=123  Identities=10%  Similarity=-0.027  Sum_probs=79.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 018743          178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI  257 (351)
Q Consensus       178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  257 (351)
                      ...+...|+++.|.+.|+.+    .+|+..+|..+..++...|++++|++.|++.++.+ +.+...|..+..++.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence            44556677777777777653    23456666777777777777777777777777764 44566777777777777777


Q ss_pred             hHHHHHHHHhhhcCCccC---------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          258 MKVDSILRQVENSDVILD---------------TPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       258 ~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      ++|...|++.........               ..++..+..++.+.|++++|.+.+....+.
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            777777777654321100               133445566667777777777777766654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=4e-09  Score=77.30  Aligned_cols=99  Identities=7%  Similarity=-0.063  Sum_probs=70.1

Q ss_pred             CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHH
Q 018743          204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII  283 (351)
Q Consensus       204 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  283 (351)
                      |+...+......+.+.|++++|+..|.+.+... |.+...|..+..+|.+.|++++|+..|+...+..+. +...|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            455556666677777777777777777777664 556667777777777777777777777777766554 566677777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh
Q 018743          284 SAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       284 ~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      .+|...|++++|+..|+++.+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            777777777777777777654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3e-08  Score=71.73  Aligned_cols=129  Identities=12%  Similarity=0.006  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743           31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY  110 (351)
Q Consensus        31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (351)
                      .|+. ...+...|+++.|++.|+.+.     +|+..+|..+..++...|++++|+..|++..+.. |.+...|..+..++
T Consensus         8 l~~~-g~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~   80 (192)
T d1hh8a_           8 LWNE-GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHH-HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHH
Confidence            3443 556678888999988887653     4667778888888888899999999998888876 55778888888888


Q ss_pred             hhcCChHHHHHHHHHHHhcCCCC-------------CC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 018743          111 GKAKKFEEMESSFSAMVESGGCH-------------PD-IFTLNSMISAYGNSGNIEKMEKWYNEFNLMG  166 (351)
Q Consensus       111 ~~~~~~~~a~~~~~~~~~~~~~~-------------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  166 (351)
                      .+.|++++|++.|++.+....-.             .+ ..++..+..++.+.|++++|.+.+.......
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            88899999988888876531000             00 1334455666667777777777776665543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6.9e-09  Score=68.51  Aligned_cols=92  Identities=15%  Similarity=0.055  Sum_probs=43.3

Q ss_pred             HHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 018743          250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA  329 (351)
Q Consensus       250 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  329 (351)
                      .+...|++++|...|+++.+..+. +...|..+..++...|++++|+..+.+..+.+ +.++..|..+..++...|++++
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence            344444455555555444444433 44444444444445555555555555444432 2234444444444555555555


Q ss_pred             HHHHHHHHHHhccc
Q 018743          330 AQNLENKMIAMKEN  343 (351)
Q Consensus       330 A~~~~~~~~~~~~~  343 (351)
                      |+..+++.++..|.
T Consensus        90 A~~~~~~a~~~~p~  103 (117)
T d1elwa_          90 AKRTYEEGLKHEAN  103 (117)
T ss_dssp             HHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhCCC
Confidence            55555554444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=1.2e-07  Score=73.54  Aligned_cols=160  Identities=9%  Similarity=-0.017  Sum_probs=74.0

Q ss_pred             HHhcCCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHhHHHHHH
Q 018743          145 AYGNSGNIEKMEKWYNEFNLM----GVKA-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-----FFPTVVTYNIVIE  214 (351)
Q Consensus       145 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~  214 (351)
                      .|...|++++|.+.|.+..+.    +-++ ...+|..+..+|.+.|++++|...++......     ......++..+..
T Consensus        46 ~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~  125 (290)
T d1qqea_          46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (290)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHH
Confidence            455555566666555554331    1111 12345555556666666666666555443211     0011233344444


Q ss_pred             HHH-hcCCHHHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCH------HhHHHH
Q 018743          215 TFG-KAGHIEKMEEYFKKMKHR----GMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT------PFFNCI  282 (351)
Q Consensus       215 ~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l  282 (351)
                      .+. ..|++++|+..+++..+.    +.++ ...++..+...+...|++++|...++++.........      ..+...
T Consensus       126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (290)
T d1qqea_         126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (290)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHH
Confidence            443 245666666666554321    1111 1233455555666666666666666655443221110      112233


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh
Q 018743          283 ISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       283 ~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      +..+...|+++.|...+++..+
T Consensus       206 ~~~~l~~~d~~~A~~~~~~~~~  227 (290)
T d1qqea_         206 GLCQLAATDAVAAARTLQEGQS  227 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHhccHHHHHHHHHHHHH
Confidence            3344555666666666665554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6e-08  Score=63.83  Aligned_cols=91  Identities=12%  Similarity=0.066  Sum_probs=50.8

Q ss_pred             HHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC
Q 018743           36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK  115 (351)
Q Consensus        36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  115 (351)
                      ...+.+.|++++|+..|++..+..  +.+...|..+..++...|++++|+..++...+.+ |.+...|..+..++...|+
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence            444555566666666666555432  3344455555555555566666666665555554 3455555555555556666


Q ss_pred             hHHHHHHHHHHHhc
Q 018743          116 FEEMESSFSAMVES  129 (351)
Q Consensus       116 ~~~a~~~~~~~~~~  129 (351)
                      +++|+..|++..+.
T Consensus        87 ~~~A~~~~~~a~~~  100 (117)
T d1elwa_          87 FEEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            66666666555544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.92  E-value=3.4e-06  Score=64.16  Aligned_cols=223  Identities=10%  Similarity=-0.030  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh----cCChHHHHHHHHHHHhcCCCCCCHhHHH
Q 018743           65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSFSAMVESGGCHPDIFTLN  140 (351)
Q Consensus        65 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  140 (351)
                      +..+..|...+...+++++|+++|++..+.|   +...+..|...|..    ..+...|...+......+    +.....
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~----~~~a~~   74 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCH   74 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----ccchhh
Confidence            4455556666666777777777777776665   44555555555554    456666666666665442    222333


Q ss_pred             HHHHHHhc----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 018743          141 SMISAYGN----SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNIV  212 (351)
Q Consensus       141 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  212 (351)
                      .+...+..    ..+.+.|...++.....|.   ......+...+..    ......+...+......   .+...+..+
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L  148 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL  148 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence            33333322    3455666666666655442   1112222222221    22344444444443332   234444444


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743          213 IETFGK----AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK----AGLIMKVDSILRQVENSDVILDTPFFNCIIS  284 (351)
Q Consensus       213 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  284 (351)
                      ...+..    ..+...+...++...+.|   +......+...+..    ..++++|...|+...+.|   ++..+..|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~  222 (265)
T d1ouva_         149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  222 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence            444443    234444555555444433   23333333333332    234555555555544443   2333334444


Q ss_pred             HHHh----cCCHHHHHHHHHHHHhcC
Q 018743          285 AYGQ----AGDVEKMGELFLTMKERH  306 (351)
Q Consensus       285 ~~~~----~g~~~~a~~~~~~~~~~~  306 (351)
                      .|.+    ..+.++|.+.|++..+.|
T Consensus       223 ~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         223 MQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            4432    224444555555544443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1e-07  Score=66.62  Aligned_cols=120  Identities=12%  Similarity=-0.035  Sum_probs=82.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743          211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG  290 (351)
Q Consensus       211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  290 (351)
                      .....+.+.|++++|+..|.+..+.. +-+...|..+..++...|++++|...|+.+.+..+. +..+|..++.++...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence            34556677888888888888887764 556777788888888888888888888888777655 6677888888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHHcCCHHHHHHH
Q 018743          291 DVEKMGELFLTMKERHCVPDNITFATMIQA--YNALGMTEAAQNL  333 (351)
Q Consensus       291 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~  333 (351)
                      ++++|...+++..... +-+...+..+..+  ....+.+++|...
T Consensus        93 ~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          93 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8888888888887752 2234444443333  2333445555543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.4e-08  Score=69.19  Aligned_cols=101  Identities=13%  Similarity=-0.038  Sum_probs=89.3

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA  323 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  323 (351)
                      +......|.+.|++++|...|+++.+.++. +...|..+..+|...|++++|+..|+++++.. +-+...|..+..++..
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence            334456788999999999999999999876 89999999999999999999999999999863 4466899999999999


Q ss_pred             cCCHHHHHHHHHHHHHhcccCCC
Q 018743          324 LGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       324 ~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      .|++++|...+++++...|....
T Consensus        91 ~g~~~eA~~~~~~a~~~~p~~~~  113 (159)
T d1a17a_          91 LGKFRAALRDYETVVKVKPHDKD  113 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHH
Confidence            99999999999999999877543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1e-08  Score=67.83  Aligned_cols=94  Identities=13%  Similarity=0.089  Sum_probs=53.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC---HhHHHHHHHHhhhcCCccC-HHhHHHHHHHH
Q 018743          211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL---IMKVDSILRQVENSDVILD-TPFFNCIISAY  286 (351)
Q Consensus       211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~  286 (351)
                      .++..+...+++++|.+.|++....+ +.+..++..+..++.+.++   +++|+.+++++...++.|+ ..++..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            44555556666666666666666654 4455666666666654333   3346666666655544333 23455556666


Q ss_pred             HhcCCHHHHHHHHHHHHhc
Q 018743          287 GQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       287 ~~~g~~~~a~~~~~~~~~~  305 (351)
                      .+.|++++|++.|+++.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            6666666666666666653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=1.9e-08  Score=73.54  Aligned_cols=102  Identities=10%  Similarity=-0.069  Sum_probs=89.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 018743          168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL  247 (351)
Q Consensus       168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  247 (351)
                      .|+...+......+.+.|++++|+..|.+.....+. +...|..+..+|.+.|++++|+..|++.++.. +-+..+|..+
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l   78 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   78 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence            367778888899999999999999999998887554 78889999999999999999999999998763 4467889999


Q ss_pred             HHHHHhcCCHhHHHHHHHHhhhcC
Q 018743          248 VSAYSKAGLIMKVDSILRQVENSD  271 (351)
Q Consensus       248 ~~~~~~~g~~~~a~~~~~~~~~~~  271 (351)
                      ..+|...|++++|...|+.+.+..
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYSLA  102 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999887654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.81  E-value=9.7e-06  Score=61.56  Aligned_cols=223  Identities=9%  Similarity=-0.066  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 018743           29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK----FHRFDLIEKILAEMSYLGIECSAVTYN  104 (351)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  104 (351)
                      +..+..|...+.+.+++++|++.|++..+ .|   +...+..|...+..    ..+...+..+++.....+   +.....
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~-~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~   74 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACD-LK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   74 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence            44455555555555566666666665554 21   33334334444433    345555555555555443   222222


Q ss_pred             HHHHHHhh----cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh----cCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018743          105 TIIDGYGK----AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG----NSGNIEKMEKWYNEFNLMGVKADIQTLNI  176 (351)
Q Consensus       105 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  176 (351)
                      .+...+..    ..+.+.|...++...+.+  .+  .....+...+.    .......+...+.....   ..+...+..
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~--~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~  147 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA--EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTI  147 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH--HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhh--hh--hHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhh
Confidence            33222221    334555555555554432  11  11112211111    12334444444444433   223344444


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 018743          177 LTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK----AGHIEKMEEYFKKMKHRGMKPNSITYCSLV  248 (351)
Q Consensus       177 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  248 (351)
                      +...+..    ..+...+...++...+.+   +......+...+..    ..+++.|..+|....+.|   ++..+..|.
T Consensus       148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG  221 (265)
T d1ouva_         148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG  221 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence            4444443    233444444544444432   33333333333332    345555666665555554   233344444


Q ss_pred             HHHHh----cCCHhHHHHHHHHhhhcC
Q 018743          249 SAYSK----AGLIMKVDSILRQVENSD  271 (351)
Q Consensus       249 ~~~~~----~g~~~~a~~~~~~~~~~~  271 (351)
                      ..|..    ..+.++|.+.|++..+.|
T Consensus       222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         222 AMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            44433    224555555555555554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.76  E-value=1e-07  Score=62.09  Aligned_cols=89  Identities=7%  Similarity=-0.130  Sum_probs=54.3

Q ss_pred             HHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 018743          247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM  326 (351)
Q Consensus       247 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  326 (351)
                      +...+.+.|++++|...|+++.+..+. ++.+|..+..++.+.|++++|+..|++..+.. +.+...|..+...|...|+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence            344555666666666666666665544 55666666666666666666666666666542 2245566666666666666


Q ss_pred             HHHHHHHHHHH
Q 018743          327 TEAAQNLENKM  337 (351)
Q Consensus       327 ~~~A~~~~~~~  337 (351)
                      +++|.+.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.70  E-value=2e-07  Score=60.69  Aligned_cols=89  Identities=8%  Similarity=-0.058  Sum_probs=64.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743          212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD  291 (351)
Q Consensus       212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  291 (351)
                      ....+.+.|++++|...|++.+... +-+...|..+..++.+.|++++|+..+++..+..+. +..++..+..+|...|+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence            4556667777777777777777664 445677777777777777777777777777776655 66777777777777777


Q ss_pred             HHHHHHHHHHH
Q 018743          292 VEKMGELFLTM  302 (351)
Q Consensus       292 ~~~a~~~~~~~  302 (351)
                      +++|.+.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777765

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.1e-07  Score=61.40  Aligned_cols=98  Identities=6%  Similarity=-0.015  Sum_probs=58.7

Q ss_pred             HHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCC-HHHHHHHHHHH
Q 018743          246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD---VEKMGELFLTMKERHCVPD-NITFATMIQAY  321 (351)
Q Consensus       246 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~  321 (351)
                      .++..+...+++++|++.|+.....++. ++.++..+..++.+.++   +++|+.+++++...+..|+ ..++..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4555566666666676666666666554 56666666666665433   3456666666665432222 22555666666


Q ss_pred             HHcCCHHHHHHHHHHHHHhcccC
Q 018743          322 NALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       322 ~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      .+.|++++|++.|+++++.+|..
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQN  105 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCC
Confidence            66677777777777666666654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4.1e-07  Score=60.76  Aligned_cols=95  Identities=9%  Similarity=0.004  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccC------HHhHHHH
Q 018743          209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD------TPFFNCI  282 (351)
Q Consensus       209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l  282 (351)
                      +..+...+...|++++|+..|.+.++.+ +.+...+..+..+|...|++++|...++++.+..+...      ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            3445556666677777777777666654 44566666666667777777777776666654332211      1244455


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh
Q 018743          283 ISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       283 ~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      ...+...+++++|++.|+....
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh
Confidence            5556666666666666666554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2e-06  Score=60.56  Aligned_cols=127  Identities=9%  Similarity=-0.016  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743           29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID  108 (351)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (351)
                      ...+......+.+.|+++.|+..|.+.....+..+..               ...-......+       ...+|+.+..
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~---------------~~~~~~~~~~~-------~~~~~~nla~   70 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF---------------SNEEAQKAQAL-------RLASHLNLAM   70 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC---------------CSHHHHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc---------------chHHHhhhchh-------HHHHHHHHHH
Confidence            3445556677888888888888888776532211110               00000000000       1224555666


Q ss_pred             HHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018743          109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS  180 (351)
Q Consensus       109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  180 (351)
                      +|.+.|++++|+..++..++..  |.++.++..+..++...|++++|+..|+...+.. |.+......+...
T Consensus        71 ~y~k~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~  139 (170)
T d1p5qa1          71 CHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVC  139 (170)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred             HHHhhhhcccccchhhhhhhcc--ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            6677777777777777766653  4456666666777777777777777777766643 2244444444333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=5e-06  Score=58.38  Aligned_cols=61  Identities=11%  Similarity=-0.114  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      |..+..+|.+.|++++|+..++..++.++. ++..+..+..++...|++++|+..|+.+.+.
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            444555555666666666666665555444 5555555666666666666666666665553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=7.6e-08  Score=80.68  Aligned_cols=228  Identities=10%  Similarity=-0.066  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 018743           12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV-YTYSILIKSCTKFHRFDLIEKILAE   90 (351)
Q Consensus        12 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~   90 (351)
                      +|.+.|++..+..+. .+.++..+..++...|++++|   |+++...   .|+. ..++... .+. ...+..+.+.++.
T Consensus         4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~e~-~Lw-~~~y~~~ie~~r~   74 (497)
T d1ya0a1           4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKVEQ-DLW-NHAFKNQITTLQG   74 (497)
T ss_dssp             HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTHHH-HHH-HHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhHHH-HHH-HHHHHHHHHHHHH
Confidence            677888887765322 344556666777777777766   5665542   3331 1111111 111 1124456666666


Q ss_pred             HHHcCCCCCHhHHHHH--HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 018743           91 MSYLGIECSAVTYNTI--IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK  168 (351)
Q Consensus        91 ~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  168 (351)
                      ..+....++..-....  .......+.++.++..+....+.  .+++...+..+...+.+.|+.+.|...+.......  
T Consensus        75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--  150 (497)
T d1ya0a1          75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--  150 (497)
T ss_dssp             HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHH--
T ss_pred             hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence            6554433333222221  12223345666666666555443  24455567778888888899988888777665421  


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 018743          169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV  248 (351)
Q Consensus       169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  248 (351)
                       ....+..+...+...|++++|...|.+..+..+. +...|+.+...+...|+..+|...|.+..... +|...++..|.
T Consensus       151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~  227 (497)
T d1ya0a1         151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ  227 (497)
T ss_dssp             -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence             1346777888899999999999999998887544 66889999999999999999999999988875 67788888888


Q ss_pred             HHHHhcC
Q 018743          249 SAYSKAG  255 (351)
Q Consensus       249 ~~~~~~g  255 (351)
                      ..+.+..
T Consensus       228 ~~~~~~~  234 (497)
T d1ya0a1         228 KALSKAL  234 (497)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            7776543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.48  E-value=0.00013  Score=56.72  Aligned_cols=272  Identities=10%  Similarity=0.086  Sum_probs=143.9

Q ss_pred             CCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 018743           27 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI  106 (351)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  106 (351)
                      |+..-...++..|.+.|.++.|..+|..+..          |..++..+.+.++++.|.+++.+.      -+..+|..+
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~   75 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV   75 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence            4555556677778888888888888877664          677777778888888887776543      156677777


Q ss_pred             HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018743          107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM  186 (351)
Q Consensus       107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  186 (351)
                      ...+.+.....-+.     +... ....++.....++..|-..|.+++...+++...... ..+...++.++..|++.+.
T Consensus        76 ~~~l~~~~e~~la~-----i~~~-~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~  148 (336)
T d1b89a_          76 CFACVDGKEFRLAQ-----MCGL-HIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP  148 (336)
T ss_dssp             HHHHHHTTCHHHHH-----HTTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhCcHHHHHH-----HHHH-HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh
Confidence            77777766554331     1111 123344555667788888888888888888765432 4566677778887777543


Q ss_pred             HHHHHHHHHHHHHcCCCCC--------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 018743          187 YDKMRSVMDFMQKRFFFPT--------VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM  258 (351)
Q Consensus       187 ~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  258 (351)
                       ++..+.+...... ..+.        ...|..++..|.+.|.++.|..++   .+.  +++..-....+..+.+.++.+
T Consensus       149 -~kl~e~l~~~s~~-y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e  221 (336)
T d1b89a_         149 -QKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVE  221 (336)
T ss_dssp             -HHHHHHHHHHSTT-SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred             -HHHHHHHHhcccc-CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChH
Confidence             3333333222110 1110        112333444445555555444332   121  222222334444555555655


Q ss_pred             HHHHHHHHhhhcCCccCHHhHH-------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 018743          259 KVDSILRQVENSDVILDTPFFN-------------CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG  325 (351)
Q Consensus       259 ~a~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  325 (351)
                      ...++.....+..    +...+             .++..+-+.+++......++...+.+   +....+++...|...+
T Consensus       222 ~~~~~i~~yL~~~----p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~  294 (336)
T d1b89a_         222 LYYRAIQFYLEFK----PLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEE  294 (336)
T ss_dssp             HHHHHHHHHHHHC----GGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcC----HHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcc
Confidence            5555554444321    12223             34444455555555555665555443   3467888899999999


Q ss_pred             CHHHHHHHHH
Q 018743          326 MTEAAQNLEN  335 (351)
Q Consensus       326 ~~~~A~~~~~  335 (351)
                      +++.-....+
T Consensus       295 d~~~l~~~i~  304 (336)
T d1b89a_         295 DYQALRTSID  304 (336)
T ss_dssp             CHHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            8766554443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.1e-07  Score=77.89  Aligned_cols=227  Identities=8%  Similarity=-0.047  Sum_probs=121.3

Q ss_pred             HHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhhcCChHHHHHHHH
Q 018743           47 EAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS-AVTYNTIIDGYGKAKKFEEMESSFS  124 (351)
Q Consensus        47 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~  124 (351)
                      +|.+.|++..+.   .|+ ...+..+..++...+++++|   ++++....  |+ ...++...  ..-...+..+.+.++
T Consensus         4 eA~q~~~qA~~l---~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~--~Lw~~~y~~~ie~~r   73 (497)
T d1ya0a1           4 QSAQYLRQAEVL---KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQ--DLWNHAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHHH---HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHH--HHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHH--HHHHHHHHHHHHHHH
Confidence            577888887764   444 33466666677777777765   66666542  22 11222111  111123456677777


Q ss_pred             HHHhcCCCCCCHhHHHHHH--HHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 018743          125 AMVESGGCHPDIFTLNSMI--SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF  202 (351)
Q Consensus       125 ~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  202 (351)
                      ...+.. ..++..-.....  ......+.++.++..+....... +++...+..+...+.+.|+.+.|...+....... 
T Consensus        74 ~~~k~~-~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-  150 (497)
T d1ya0a1          74 GQAKNR-ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-  150 (497)
T ss_dssp             HHHSCS-SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH-
T ss_pred             Hhcccc-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence            765442 222222222111  11222344455544444333322 3445567777788888889888888777655431 


Q ss_pred             CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHH
Q 018743          203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI  282 (351)
Q Consensus       203 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  282 (351)
                        ...++..+...+...|++++|...|.+..+.. |-+...|+.|...+...|+..+|...|.+.....+ |-+.++..|
T Consensus       151 --~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL  226 (497)
T d1ya0a1         151 --CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNL  226 (497)
T ss_dssp             --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHH
Confidence              23566778888889999999999999988874 55678899999999999999999999999887764 467778888


Q ss_pred             HHHHHhcC
Q 018743          283 ISAYGQAG  290 (351)
Q Consensus       283 ~~~~~~~g  290 (351)
                      ...+.+..
T Consensus       227 ~~~~~~~~  234 (497)
T d1ya0a1         227 QKALSKAL  234 (497)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            77766544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4e-06  Score=55.79  Aligned_cols=93  Identities=17%  Similarity=0.090  Sum_probs=43.1

Q ss_pred             HHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC-----HHHHHHHHHH
Q 018743          247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PD-----NITFATMIQA  320 (351)
Q Consensus       247 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~-----~~~~~~l~~~  320 (351)
                      +...+...|++++|+..|++.++.++. +...+..+..+|.+.|++++|++.++++++.... +.     ..+|..+...
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555544433 4444555555555555555555555554432100 00     1234444444


Q ss_pred             HHHcCCHHHHHHHHHHHHHh
Q 018743          321 YNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       321 ~~~~g~~~~A~~~~~~~~~~  340 (351)
                      +...+++++|++.+++.+..
T Consensus        89 ~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHhc
Confidence            55555555555555554443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.46  E-value=5.4e-06  Score=57.07  Aligned_cols=113  Identities=13%  Similarity=0.067  Sum_probs=58.9

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHH
Q 018743          207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK----PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI  282 (351)
Q Consensus       207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  282 (351)
                      ..+..-...+.+.|++++|+..|.+.+..-..    ++....                    .....    ....+|..+
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------------------~~~~~----~~~~~~~Nl   73 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------------------DKKKN----IEISCNLNL   73 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------------------HHHHH----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------------------Hhhhh----HHHHHHhhH
Confidence            34445556677788888888888877653100    010000                    00000    011234445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       283 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      ..+|.+.|++++|++.++.+++.. +.+..+|..+..++...|++++|+..|++.++.+|.+
T Consensus        74 a~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  134 (153)
T d2fbna1          74 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  134 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            555566666666666666655542 2345555556666666666666666666666555543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.42  E-value=5.2e-07  Score=68.25  Aligned_cols=129  Identities=11%  Similarity=-0.028  Sum_probs=80.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHH
Q 018743          216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM  295 (351)
Q Consensus       216 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  295 (351)
                      ..+.|++++|+..+++.++.. |-+...+..++..++..|++++|...++...+..+. +...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHH
Confidence            346788888888888888774 557788888888888888888888888888776544 444444444444333333222


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       296 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                      ..-.......+-+++...+......+...|+.++|.+.++++.+..|..+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            111111111111122233344456677888899999888888888776543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.41  E-value=0.0002  Score=55.55  Aligned_cols=257  Identities=18%  Similarity=0.174  Sum_probs=158.9

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL   83 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (351)
                      |.+.|.++.|..+|..+.         -|..++..+.+.++++.|.+.+.+..       +..+|..+...+.+......
T Consensus        24 c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~-------~~~~~k~~~~~l~~~~e~~l   87 (336)
T d1b89a_          24 CYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRL   87 (336)
T ss_dssp             -----CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC-------CHHHHHHHHHHHHhCcHHHH
Confidence            446777888888886543         24567788889999999988877543       45678888888888776654


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743           84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN  163 (351)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  163 (351)
                      +     .+.......++.....++..|-..|.+++...+++.....  -..+...++.++..|++.+ .++..+.+....
T Consensus        88 a-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s  159 (336)
T d1b89a_          88 A-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFK-PQKMREHLELFW  159 (336)
T ss_dssp             H-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS
T ss_pred             H-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHHhC-hHHHHHHHHhcc
Confidence            3     2223333456666678899999999999999999988654  3567778888999888864 455555554432


Q ss_pred             hcCCCCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743          164 LMGVKADIQ----------TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK  233 (351)
Q Consensus       164 ~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  233 (351)
                      .   ..+..          .|..++-.|.+.|+++.|..++-   .+  .++..-....+..+.+..+++...++.....
T Consensus       160 ~---~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL  231 (336)
T d1b89a_         160 S---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKDIITKVANVELYYRAIQFYL  231 (336)
T ss_dssp             T---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred             c---cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHccCChHHHHHHHHHHH
Confidence            1   22221          12334445555555555544322   21  2233334455666777777777666666655


Q ss_pred             HcCCCccHHHHHHH-------------HHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743          234 HRGMKPNSITYCSL-------------VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF  299 (351)
Q Consensus       234 ~~~~~~~~~~~~~l-------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  299 (351)
                      +.  .|+  ..+.+             +..+.+.++.......++.....+   +..+.+++...|...++++.-.+..
T Consensus       232 ~~--~p~--~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         232 EF--KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             HH--CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             Hc--CHH--HHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence            53  232  23333             444445555555555555544443   4568889999999999875544333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.39  E-value=1.3e-05  Score=55.01  Aligned_cols=60  Identities=17%  Similarity=0.012  Sum_probs=28.0

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      +..+..+|.+.|++++|+..++.+.+.++. +..+|..+..++...|++++|+..|++..+
T Consensus        70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          70 NLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444444444444444444444444333 444444444444444444444444444444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.38  E-value=1.4e-05  Score=55.86  Aligned_cols=97  Identities=11%  Similarity=-0.016  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743          242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY  321 (351)
Q Consensus       242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  321 (351)
                      ..|..+..+|.+.|++++|+..++...+.++. +...|..+..++...|++++|...|+++.+.. +.+......+....
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            34566777888889999999999888887765 78888888888999999999999999888752 23444555554444


Q ss_pred             HHcCCH-HHHHHHHHHHHHh
Q 018743          322 NALGMT-EAAQNLENKMIAM  340 (351)
Q Consensus       322 ~~~g~~-~~A~~~~~~~~~~  340 (351)
                      ...+.. +...+++..|.+.
T Consensus       143 ~~~~~~~e~~kk~~~~~f~~  162 (168)
T d1kt1a1         143 KKAKEHNERDRRTYANMFKK  162 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhh
Confidence            444433 3345666665544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.36  E-value=1.2e-05  Score=56.29  Aligned_cols=80  Identities=8%  Similarity=-0.085  Sum_probs=57.2

Q ss_pred             cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ  319 (351)
Q Consensus       240 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  319 (351)
                      ....+..+..++.+.|++++|+..+..+.+..+. ++..|..+..++...|++++|++.|+++.+.. +.+......+..
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~  153 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3445666777788888888888888888877665 77778888888888888888888888888752 224444444444


Q ss_pred             HH
Q 018743          320 AY  321 (351)
Q Consensus       320 ~~  321 (351)
                      +.
T Consensus       154 ~~  155 (169)
T d1ihga1         154 VK  155 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.35  E-value=2.3e-05  Score=54.81  Aligned_cols=131  Identities=8%  Similarity=-0.007  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743           29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID  108 (351)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (351)
                      ...+......+.+.|++++|+..|..........+..              . .......+.+       ...+|+.+..
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~--------------~-~~~~~~~~~~-------~~~~~~Nla~   72 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL--------------S-EKESKASESF-------LLAAFLNLAM   72 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC--------------C-HHHHHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc--------------c-hhhhhhcchh-------HHHHHHhHHH
Confidence            3455666777888888888888887765421111100              0 0000000000       1234555666


Q ss_pred             HHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018743          109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA  184 (351)
Q Consensus       109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  184 (351)
                      +|.+.|++++|+..++..++..  +.+..+|..+..++...|++++|...|+.+.... |.+......+.......
T Consensus        73 ~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          73 CYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccchhhhhhhhhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence            7777777777777777777663  5566677777777777777777777777776643 33444444444443333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.33  E-value=1.2e-05  Score=56.33  Aligned_cols=82  Identities=5%  Similarity=-0.087  Sum_probs=66.2

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743          205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS  284 (351)
Q Consensus       205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  284 (351)
                      ....|..+..++.+.|++++|+..+.+.++.. +.+...|..+..++...|++++|...|+.+.+..+. +..+...+..
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~  153 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            34567778888999999999999999998875 567888999999999999999999999999988665 6666666555


Q ss_pred             HHHh
Q 018743          285 AYGQ  288 (351)
Q Consensus       285 ~~~~  288 (351)
                      +..+
T Consensus       154 ~~~~  157 (169)
T d1ihga1         154 VKQK  157 (169)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.32  E-value=8.6e-07  Score=67.03  Aligned_cols=123  Identities=12%  Similarity=-0.001  Sum_probs=80.7

Q ss_pred             cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCHH
Q 018743            4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFD   82 (351)
Q Consensus         4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~   82 (351)
                      ..+.|++++|+..+++.++..+. +...+..+...++..|++++|...++...+.   .|+ ...+..+...+...+..+
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence            35678999999999999888766 8888999999999999999999999988874   444 444444444443333333


Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 018743           83 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG  130 (351)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  130 (351)
                      ++..-.......+.+++...+......+...|+.++|.+.++++.+..
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            322211111111223334444455666777888888888888877653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.25  E-value=5e-05  Score=53.44  Aligned_cols=124  Identities=12%  Similarity=0.101  Sum_probs=85.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 018743          177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL  256 (351)
Q Consensus       177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  256 (351)
                      ........|++++|...|........  ....        ......+-+...-..+..    .....+..+...+...|+
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~r--G~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWR--GPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCC--SSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCc--cccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence            34566778888888888888776421  1100        000000001111111111    123567778889999999


Q ss_pred             HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCCCCHHHHH
Q 018743          257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK-----ERHCVPDNITFA  315 (351)
Q Consensus       257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~~  315 (351)
                      +++|...++.+.+..+. +...|..++.++...|+..+|++.|+++.     +.|+.|...+-.
T Consensus        83 ~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~  145 (179)
T d2ff4a2          83 ASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  145 (179)
T ss_dssp             HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             chHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence            99999999999988876 88999999999999999999999999875     458999876543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.14  E-value=0.00014  Score=51.02  Aligned_cols=72  Identities=10%  Similarity=0.033  Sum_probs=50.5

Q ss_pred             HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHh-----cCCCCCHHH
Q 018743          100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-----MGVKADIQT  173 (351)
Q Consensus       100 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~  173 (351)
                      ...+..+...+...|++++|+..++++++..  +-+...|..++.++.+.|+..+|++.|+++..     .|+.|+..+
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            3455667777777777777777777777763  55667777777777777777777777777632     466666544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.14  E-value=5.2e-06  Score=56.53  Aligned_cols=38  Identities=13%  Similarity=-0.134  Sum_probs=23.7

Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 018743            6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL   44 (351)
Q Consensus         6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   44 (351)
                      +.+.+++|+..|+...+..+. ++.++..+..++...++
T Consensus         9 r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~   46 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQ   46 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhh
Confidence            445567777777777666544 66666666666654433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.14  E-value=5.5e-05  Score=52.05  Aligned_cols=97  Identities=13%  Similarity=-0.022  Sum_probs=60.6

Q ss_pred             HHHhcCCHhHHHHHHHHhhhcCCc-c----------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCC---
Q 018743          250 AYSKAGLIMKVDSILRQVENSDVI-L----------DTPFFNCIISAYGQAGDVEKMGELFLTMKER-----HCVPD---  310 (351)
Q Consensus       250 ~~~~~g~~~~a~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p~---  310 (351)
                      .+...|++++|+..|++..+.... |          ....|+.+..+|...|++++|...+++.++.     ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            344556666666666665532111 1          1245667777777788888887777776532     11111   


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743          311 --NITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK  346 (351)
Q Consensus       311 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  346 (351)
                        ...+..+..+|...|++++|+..|+++++..+....
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence              124566777888888888888888888877665443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.11  E-value=1.6e-05  Score=53.93  Aligned_cols=111  Identities=12%  Similarity=0.113  Sum_probs=59.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----------CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc
Q 018743          220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA----------GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA  289 (351)
Q Consensus       220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  289 (351)
                      +.+++|...|+...+.. |.+...+..+..++...          +.+++|+..|++..+.++. +..+|..+..+|...
T Consensus        11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHc
Confidence            33455555555554443 33444444444444322          2345566666666665554 555666666665544


Q ss_pred             C-----------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743          290 G-----------DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM  340 (351)
Q Consensus       290 g-----------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  340 (351)
                      |           .+++|.+.|++..+.  .|+...+..-+..+      .+|..++.++.+.
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~  142 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQ  142 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred             ccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence            3           357788888888874  56665555433333      4555566555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.4e-05  Score=47.95  Aligned_cols=59  Identities=17%  Similarity=0.082  Sum_probs=26.4

Q ss_pred             HHHHHHHhcCCHhHHHHHHHHhhhcCC-----ccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743          246 SLVSAYSKAGLIMKVDSILRQVENSDV-----ILD-TPFFNCIISAYGQAGDVEKMGELFLTMKE  304 (351)
Q Consensus       246 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  304 (351)
                      .+...+.+.|++++|...|++..+...     .++ ..+++.+..++.+.|++++|++.++++++
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            444445555555555555554432110     001 23344444555555555555555555444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.86  E-value=0.00023  Score=48.80  Aligned_cols=97  Identities=15%  Similarity=0.094  Sum_probs=48.4

Q ss_pred             HHHHH--HHHHhccCChHHHHHHHHHhhccCCCCcc----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---
Q 018743           31 VYTAL--VSAYGQSGLLDEAFSTINDMKSVSDCKPD----------VYTYSILIKSCTKFHRFDLIEKILAEMSYLG---   95 (351)
Q Consensus        31 ~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---   95 (351)
                      +|..+  ...+.+.|++++|++.|++..+.....|+          ..+|+.+..++...|++++|...+++..+..   
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            44444  44455667777777777776653222221          2345555555666666666665555544320   


Q ss_pred             --CCCC-----HhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 018743           96 --IECS-----AVTYNTIIDGYGKAKKFEEMESSFSAMV  127 (351)
Q Consensus        96 --~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~  127 (351)
                        ..++     ..++..+..+|...|++++|+..|++..
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence              0111     1133444555555555555555555543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00034  Score=43.17  Aligned_cols=65  Identities=9%  Similarity=-0.113  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHhhccCC----CCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743           30 DVYTALVSAYGQSGLLDEAFSTINDMKSVSD----CKP-DVYTYSILIKSCTKFHRFDLIEKILAEMSYL   94 (351)
Q Consensus        30 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   94 (351)
                      ..+-.+...+.+.|+++.|+..|++..+...    ..+ ...++..+..++.+.|++++|...++++.+.
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3333445555555555555555554433210    011 1234444455555555555555555555444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.28  E-value=0.0091  Score=39.12  Aligned_cols=81  Identities=11%  Similarity=-0.040  Sum_probs=36.9

Q ss_pred             CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCC
Q 018743          255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ----AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA----LGM  326 (351)
Q Consensus       255 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~  326 (351)
                      .+.++|...+++..+.+   ++.....|...|..    ..+.++|.++|++..+.|   ++.....|...|..    ..+
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence            34445555555444443   22333333333332    234555555555555543   23333334444443    235


Q ss_pred             HHHHHHHHHHHHHhc
Q 018743          327 TEAAQNLENKMIAMK  341 (351)
Q Consensus       327 ~~~A~~~~~~~~~~~  341 (351)
                      .++|.+++++..+.+
T Consensus       111 ~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         111 EKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCC
Confidence            555666666555544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.05  E-value=0.0072  Score=38.50  Aligned_cols=70  Identities=7%  Similarity=-0.039  Sum_probs=36.4

Q ss_pred             cCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743          274 LDTPFFNCIISAYGQAG---DVEKMGELFLTMKERHCVPDN-ITFATMIQAYNALGMTEAAQNLENKMIAMKENS  344 (351)
Q Consensus       274 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  344 (351)
                      |+..+-.....++++..   ++++++.+++++.+.+ +.+. ..+..|.-+|.+.|++++|.+.++++++..|.+
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence            34444444555555443   3445666666655432 1122 344455555666666666666666666665554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.87  E-value=0.024  Score=36.96  Aligned_cols=81  Identities=10%  Similarity=-0.061  Sum_probs=46.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh----cCC
Q 018743          220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK----AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ----AGD  291 (351)
Q Consensus       220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~  291 (351)
                      .+.++|+.++++..+.|   ++.....|...|..    ..+.++|..+|++..+.+   ++.....|...|..    ..+
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence            45566666666666655   23333444444433    345667777777766654   33444455555544    346


Q ss_pred             HHHHHHHHHHHHhcC
Q 018743          292 VEKMGELFLTMKERH  306 (351)
Q Consensus       292 ~~~a~~~~~~~~~~~  306 (351)
                      .++|.++|++..+.|
T Consensus       111 ~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         111 EKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCC
Confidence            777777777777665

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.68  E-value=0.03  Score=35.34  Aligned_cols=138  Identities=11%  Similarity=0.022  Sum_probs=73.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 018743            7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK   86 (351)
Q Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   86 (351)
                      .|..++..++..+....   .+..-||-+|--....-+-+...++++.+-+...+.|              .++......
T Consensus        15 dG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~vv~   77 (161)
T d1wy6a1          15 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSVVE   77 (161)
T ss_dssp             TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHHHH
T ss_pred             hhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHHHHH
Confidence            35555666666555542   2444555555555555555555555555544322221              122222222


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 018743           87 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG  166 (351)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  166 (351)
                      .+-.+     ..+...+...++.+...|+-+.-.+++..+.+.+  .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus        78 C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~--~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          78 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            22111     1233445555666677777777777777755543  5556666667777777777777777777776666


Q ss_pred             CC
Q 018743          167 VK  168 (351)
Q Consensus       167 ~~  168 (351)
                      ++
T Consensus       151 ~K  152 (161)
T d1wy6a1         151 EK  152 (161)
T ss_dssp             CH
T ss_pred             HH
Confidence            43

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.40  E-value=0.048  Score=34.43  Aligned_cols=140  Identities=12%  Similarity=0.019  Sum_probs=71.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHH
Q 018743           75 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK  154 (351)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  154 (351)
                      +.-.|..++..+++.+.....   +..-||-++.-....-+-+-..++++.+-...    |.          ...++...
T Consensus        12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~F----Dl----------s~C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DL----------DKCQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CG----------GGCSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhc----Cc----------hhhhcHHH
Confidence            344566677777777666542   45555555555555566666666666653321    11          11122222


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743          155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH  234 (351)
Q Consensus       155 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  234 (351)
                      ....+-.+     ..+...+..-++.+...|.-++..+++..+.+. -.|++...-.+..+|.+.|...++-+++.+.-+
T Consensus        75 vv~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          75 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            22222221     122333444555555666666666666655442 334555555556666666666666666666665


Q ss_pred             cCC
Q 018743          235 RGM  237 (351)
Q Consensus       235 ~~~  237 (351)
                      .|+
T Consensus       149 ~G~  151 (161)
T d1wy6a1         149 KGE  151 (161)
T ss_dssp             TTC
T ss_pred             HhH
Confidence            554

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.87  E-value=0.074  Score=31.70  Aligned_cols=63  Identities=11%  Similarity=0.211  Sum_probs=46.8

Q ss_pred             CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743          256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ  319 (351)
Q Consensus       256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  319 (351)
                      |.-++.+-+..+...+..|++.+..+.+++|.+.+++..|+++|+..+.. +.++...|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence            45567777777778888888888888888888888888888888887754 3334556666554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.4  Score=38.43  Aligned_cols=308  Identities=8%  Similarity=-0.003  Sum_probs=157.2

Q ss_pred             ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCH
Q 018743            5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA--YGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRF   81 (351)
Q Consensus         5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~   81 (351)
                      .+.|+.+++.++...+...   | ...|-..-..  ........+...+++.-..    .|- ...-...+..+.+.+++
T Consensus        17 ~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~----~P~~~~lr~~~l~~L~~~~~w   88 (450)
T d1qsaa1          17 WDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRANPT----LPPARTLQSRFVNELARREDW   88 (450)
T ss_dssp             HHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHHCCC----ChhHHHHHHHHHHHHHhccCH
Confidence            3567777777766666432   2 2233322222  2233445555555544322    222 22233445667777887


Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHH--HHHHH
Q 018743           82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK--MEKWY  159 (351)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~  159 (351)
                      +.....+.     ..+.+...-..+..+....|+.++|...+..+-..+...|+  .+..+...+...|.+..  ..+-+
T Consensus        89 ~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~~~~~lt~~~~~~R~  161 (450)
T d1qsaa1          89 RGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWRASGKQDPLAYLERI  161 (450)
T ss_dssp             HHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch--HHHHHHHHHHhcCCCCHHHHHHHH
Confidence            66554332     22445555556777788888888888888777655433443  34444444444433221  11122


Q ss_pred             HHHHhcC-----------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh--cCCHHHH
Q 018743          160 NEFNLMG-----------VKADI-QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK--AGHIEKM  225 (351)
Q Consensus       160 ~~~~~~~-----------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a  225 (351)
                      ..+...|           ++++. ......+.....   ...+...   ...  ..++......+..++.+  ..+.+.+
T Consensus       162 ~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~---~~~--~~~~~~~~~~~~~~l~rla~~d~~~a  233 (450)
T d1qsaa1         162 RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTF---ART--TGATDFTRQMAAVAFASVARQDAENA  233 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHH---HHH--SCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHH---Hhc--CCCChhhhHHHHHHHHHHhccChhHH
Confidence            2221111           11111 112222222111   1111111   111  11233333333333332  3578888


Q ss_pred             HHHHHHHHHcCCCccHHHHHH----HHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743          226 EEYFKKMKHRGMKPNSITYCS----LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT  301 (351)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  301 (351)
                      ..++....... ..+......    +.......+..+.+...+........  +.....-.+......+++..+...+..
T Consensus       234 ~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~  310 (450)
T d1qsaa1         234 RLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLAR  310 (450)
T ss_dssp             HHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHh
Confidence            88888876643 222222222    22233345667777777776655432  444445556666778899999999887


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743          302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA  339 (351)
Q Consensus       302 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  339 (351)
                      |... ......-.--+.+++...|+.+.|...|..+..
T Consensus       311 l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         311 LPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             SCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            7543 122233334566889999999999999988753

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.45  E-value=0.3  Score=30.79  Aligned_cols=67  Identities=9%  Similarity=-0.068  Sum_probs=38.2

Q ss_pred             ccHHHHHHHHHHHHhcC---CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743          239 PNSITYCSLVSAYSKAG---LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER  305 (351)
Q Consensus       239 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  305 (351)
                      |+..+--....++.+..   +.++++.+++++.+.++.-....+-.|.-+|.+.|++++|.+.++.+.+.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            44445445555555443   34556666666665443212245555666677777777777777777663

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.38  E-value=0.8  Score=27.21  Aligned_cols=49  Identities=4%  Similarity=0.010  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743           81 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES  129 (351)
Q Consensus        81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (351)
                      .-++.+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.+..+
T Consensus        22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K   70 (105)
T d1v54e_          22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   70 (105)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3344444555555555555555555555555555555555555555444

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.37  E-value=2.7  Score=33.35  Aligned_cols=205  Identities=6%  Similarity=-0.001  Sum_probs=116.5

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCHhH--HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018743          114 KKFEEMESSFSAMVESGGCHPDIFT--LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR  191 (351)
Q Consensus       114 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  191 (351)
                      .+.+.+...+..........++...  ...+.......+..+.+..++......+  .+.......+......+++..+.
T Consensus       228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~  305 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN  305 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHH
Confidence            4667777777776555322222111  1112222334556677777776665543  34444444555566677888888


Q ss_pred             HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 018743          192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD  271 (351)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  271 (351)
                      ..+..+...... .....--+.+++...|+.+.|...|..+..   .++  -|..|...  +.|..-..    . .....
T Consensus       306 ~~~~~l~~~~~~-~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa~--~Lg~~~~~----~-~~~~~  372 (450)
T d1qsaa1         306 TWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAAQ--RIGEEYEL----K-IDKAP  372 (450)
T ss_dssp             HHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHHH--HTTCCCCC----C-CCCCC
T ss_pred             HHHHhcCccccc-HHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHHH--HcCCCCCC----C-cCCCC
Confidence            877776443221 233334566777888888888888887653   233  23333221  22221000    0 00000


Q ss_pred             CccC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743          272 VILD-----TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM  337 (351)
Q Consensus       272 ~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  337 (351)
                      ..+.     ...+ .-+..+...|....|...|..+... .  +......+.....+.|.++.|+....+.
T Consensus       373 ~~~~~~~~~~~~~-~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         373 QNVDSALTQGPEM-ARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             SCCCCHHHHSHHH-HHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             ccHHHhhhcChHH-HHHHHHHHcCCchHHHHHHHHHHhC-C--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            0000     0111 3356778899999999999988764 2  5566778888889999999999877655

>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy-chain linker domain
domain: Clathrin heavy-chain linker domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.01  E-value=3.5  Score=26.79  Aligned_cols=95  Identities=8%  Similarity=0.036  Sum_probs=45.5

Q ss_pred             HHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCH
Q 018743           92 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI  171 (351)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  171 (351)
                      .+.|++-....|..-.+.+...|++.+|-++-....+  |+-.+..|.+.+-.+-...|...-.+.+|..+.+.| ..+.
T Consensus        23 ~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~--giLRt~~Ti~rFk~~~~~pGq~spLL~YF~~Ll~~~-~LN~   99 (157)
T d1bpoa1          23 VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNK   99 (157)
T ss_dssp             HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCH
T ss_pred             HhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc--ccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-CCch
Confidence            3444444455555555556666666666666544422  244455554444433334445555555555555544 2333


Q ss_pred             HHHHHHHHHHHhcCCHHH
Q 018743          172 QTLNILTKSYGRAGMYDK  189 (351)
Q Consensus       172 ~~~~~l~~~~~~~~~~~~  189 (351)
                      .--..+++.-...|+.+-
T Consensus       100 ~ESlEl~r~vL~q~r~~l  117 (157)
T d1bpoa1         100 YESLELCRPVLQQGRKQL  117 (157)
T ss_dssp             HHHHHHHHHHHHTTCHHH
T ss_pred             HHhHHHHHHHHhcCcHHH
Confidence            322333444444444433

>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy-chain linker domain
domain: Clathrin heavy-chain linker domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.74  E-value=5.4  Score=25.88  Aligned_cols=98  Identities=8%  Similarity=-0.024  Sum_probs=49.3

Q ss_pred             hCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 018743           22 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV  101 (351)
Q Consensus        22 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  101 (351)
                      +.|.+.....|..-...+...|++.+|-.+-....  .|+--+..|.+.+-..-...|...-.+.+|..+.+.| ..|..
T Consensus        24 r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP--~giLRt~~Ti~rFk~~~~~pGq~spLL~YF~~Ll~~~-~LN~~  100 (157)
T d1bpoa1          24 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP--KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKY  100 (157)
T ss_dssp             HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG--GGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHH
T ss_pred             hcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCC--cccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-CCchH
Confidence            34455455555555666666666666666555444  3444455555554443334445555555555555554 33433


Q ss_pred             HHHHHHHHHhhcCChHHHHHH
Q 018743          102 TYNTIIDGYGKAKKFEEMESS  122 (351)
Q Consensus       102 ~~~~l~~~~~~~~~~~~a~~~  122 (351)
                      --.-+++.-...|+.+-..++
T Consensus       101 ESlEl~r~vL~q~r~~lve~W  121 (157)
T d1bpoa1         101 ESLELCRPVLQQGRKQLLEKW  121 (157)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhHHHHHHHHhcCcHHHHHHH
Confidence            333344444444554433333