Citrus Sinensis ID: 018761

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MAWWSSASASSTFNSSFLLRSSLSSYSNKKLSSNHVAHAPPSLFSPYITINSFKKRCIIVTNCTTTNKKNMESSSTVDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGSV
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccEEEEEccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccEccccccccccccEEEccccccccccccccEEEEccccEEEEEEEEEEcccccccccccccEEcccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHccc
Coil and Loop (DISEMBL)
mawwssasasstfnsSFLLRSSlssysnkklssnhvahappslfspyitinsfKKRCIIVTNCtttnkknmessstvdcvetgtdveclisptdkeEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFAssqgrklpsgfNAWVSIFLFALVDascfqapafdesnsslwgsGEWWMLLAAQSMAVGTVMVRWVSkysdpvmatgwHMVIGGLPLMVISVLnhdpvygesvkeLTSSDILALLYTSIFGSAISYGVYFYsatkgsltklssltfltpMFASIFGFLylgetfsplqlVGAAVTVVAIYLVNFRGSV
Flexible Loop (DISEMBL)
mawwssasasstfnsSFLLRSSLSSYSNKKLSSNHvahappslfspyitINSFKKRCIIVTNCtttnkknmessstvdcvetgTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGSV
Low Complexity Region (SEG)
MawwssasasstfnssfllrsslssysnkklssNHVAHAPPSLFSPYITINSFKKRCIIVTNCTTTNKKNMESSSTVDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYsatkgsltklssltfltPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGSV
Disordered region (IsUnstruct)
*****************************************SLFSPYITINSFKKRCIIVTNCTTTN*********VDCVETGTDVECLI*****************QVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF****
Disordered Region (DISOPRED)
********AS***NSSFLLRSSLS***N*K***NHVAHAPPSLFSPYITINSF*************************CVETGTDVEC*************************MLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG**
Disordered Region (DISEMBL)
*************NSSFLLRSSLSSYSNKKLSSNHVAHAPPSLFSPYITINSFKKRCIIVTNCTTTNKK*********CVETGTDVECLISPTDK*********QDGQVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGSV
Disordered Region (DISPRO)
******************LRSSLSSYSNKKLSSNHVAHAPPSLFSPYITINSFKKRCIIVTNCTTTNKKNMESSSTVDCVETGTDVECLISPT*************GQVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAWWSSASASSTFNSSFLLRSSLSSYSNKKLSSNHVAHAPPSLFSPYITINSFKKRCIIVTNCTTTNKKNMESSSTVDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q93V85	417	WAT1-related protein At3g	yes	no	0.414	0.347	0.84	7e-70
P74436	330	Uncharacterized transport	N/A	no	0.437	0.463	0.515	3e-34
O34416	292	Uncharacterized transport	yes	no	0.382	0.458	0.253	0.0005
O29740	289	Uncharacterized transport	yes	no	0.197	0.238	0.347	0.0008

>sp|Q93V85|WTR16_ARATH WAT1-related protein At3g02690, chloroplastic OS=Arabidopsis thaliana GN=At3g02690 PE=1 SV=1

 Score =  264 bits (675), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 126/150 (84%), Positives = 143/150 (95%)

Query: 197 DESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLN 256
           D +N SLWGSGEWWMLLAAQSMA+GTVMVRWVSKYSDP+MATGWHMVIGGLPL+ ISV+N
Sbjct: 263 DGNNFSLWGSGEWWMLLAAQSMAIGTVMVRWVSKYSDPIMATGWHMVIGGLPLLAISVIN 322

Query: 257 HDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASI 316
           HDPV+  S+++L+++D++ALLYTSIFGSA+SYGVYFYSATKGSLTKLSSLTFLTPMFASI
Sbjct: 323 HDPVFNGSLQDLSTNDVIALLYTSIFGSAVSYGVYFYSATKGSLTKLSSLTFLTPMFASI 382

Query: 317 FGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346
           FG+LYL ETFS LQLVGAAVT+VAIYLVNF
Sbjct: 383 FGYLYLNETFSSLQLVGAAVTLVAIYLVNF 412

Arabidopsis thaliana (taxid: 3702)

>sp|P74436|Y355_SYNY3 Uncharacterized transporter sll0355 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0355 PE=3 SV=1

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/157 (51%), Positives = 109/157 (69%), Gaps = 4/157 (2%)

Query: 191 FQAPAFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLM 250
            Q  + + S S+L  SGE WMLLA+ SMAVGTV++ +VS+  DPV+ATGWHM+IGGLPL+
Sbjct: 157 LQGLSINWSGSALGSSGELWMLLASLSMAVGTVLIPFVSRRVDPVVATGWHMIIGGLPLL 216

Query: 251 VISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLT 310
            I+++       E  + +       L Y ++FGSAI+YG++FY A+KG+LT LSSLTFLT
Sbjct: 217 AIALVQDS----EPWQNIDLWGWGNLAYATVFGSAIAYGIFFYLASKGNLTSLSSLTFLT 272

Query: 311 PMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347
           P+FA  F  L L E  S LQ +G A T+V+IYL+N R
Sbjct: 273 PIFALSFSNLILEEQLSSLQWLGVAFTLVSIYLINQR 309

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|O34416|YOAV_BACSU Uncharacterized transporter YoaV OS=Bacillus subtilis (strain 168) GN=yoaV PE=3 SV=1

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESV- 265
           GE  +L+AA S  +  V  +   K+ D +    WH+++G + L+V S +       E+V 
Sbjct: 150 GELCVLVAALSWGIANVFSKLQFKHIDIIHMNAWHLMMGAVMLLVFSFIF------EAVP 203

Query: 266 -KELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGE 324
             E T   + +LL+  +  +  ++ V+F+   +   +K S      P+ A  FG+L L E
Sbjct: 204 SAEWTYQAVWSLLFNGLLSTGFTFVVWFWVLNQIQASKASMALMFVPVLALFFGWLQLHE 263

Query: 325 TFSPLQLVGAAVTVVAIYLVNF 346
             +   ++GA +    I++  F
Sbjct: 264 QITINIILGALLICCGIFMNTF 285

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O29740|Y510_ARCFU Uncharacterized transporter AF_0510 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0510 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query: 275 ALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGA 334
           ALLY SI  S  +Y V++Y+ T    T ++   +L P+F +IF F  L E       +G 
Sbjct: 214 ALLYLSILCSVFAYVVWYYALTNADSTSVAVYVYLVPLFTAIFAFYALNEKPDFFTAIGG 273

Query: 335 AVTVVAIYL 343
            +T+  +YL
Sbjct: 274 IITIAGVYL 282

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
147815348	365	hypothetical protein VITISV_042981 [Viti	0.665	0.638	0.700	1e-102
356569422	412	PREDICTED: uncharacterized transporter s	0.965	0.820	0.495	2e-86
356537734	412	PREDICTED: uncharacterized transporter s	0.805	0.684	0.543	1e-85
297828730	424	integral membrane family protein [Arabid	0.917	0.757	0.491	5e-79
22128715	440	unknown protein [Oryza sativa Japonica G	0.777	0.618	0.494	2e-76
125532481	440	hypothetical protein OsI_34156 [Oryza sa	0.777	0.618	0.494	3e-76
224119940	279	predicted protein [Populus trichocarpa]	0.622	0.781	0.613	8e-75
242039249	415	hypothetical protein SORBIDRAFT_01g01839	0.777	0.655	0.482	2e-73
255579425	475	Protein pecM, putative [Ricinus communis	0.451	0.332	0.831	4e-69
6957732	432	unknown protein [Arabidopsis thaliana]	0.414	0.335	0.84	3e-68

>gi|147815348|emb|CAN76724.1| hypothetical protein VITISV_042981 [Vitis vinifera]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/274 (70%), Positives = 214/274 (78%), Gaps = 41/274 (14%)

Query: 117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNA 176
           EW VLVSPFFFWGTAMVAMK+VLPKAG FFV++FRLIPAGLL+I +A+S+GRK PSGF+A
Sbjct: 89  EWGVLVSPFFFWGTAMVAMKQVLPKAGPFFVSSFRLIPAGLLIIAYAASRGRKQPSGFSA 148

Query: 177 WVSIFLFALVDASCFQA---------------------------------------PAF- 196
           W+SIFLFALVDA+CFQ                                        PAF 
Sbjct: 149 WLSIFLFALVDAACFQGFLAEGLQRTSAALLFGESIGFIGAAGLVLGVXGLLLLEVPAFS 208

Query: 197 -DESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVL 255
            D SN SLWGSGEWWMLLAAQSMAVGTVM+RWV+KYSDPVMATGWHMVIGGLPL++IS+L
Sbjct: 209 VDGSNFSLWGSGEWWMLLAAQSMAVGTVMIRWVTKYSDPVMATGWHMVIGGLPLVLISIL 268

Query: 256 NHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFAS 315
           NHDP    S  ELTSSD+LALLYTSIFGSAISY V+FY AT+GSLTKLSSLTFLTPMFAS
Sbjct: 269 NHDPALSGSFNELTSSDLLALLYTSIFGSAISYSVFFYYATRGSLTKLSSLTFLTPMFAS 328

Query: 316 IFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 349
           IFGFLYLGET SPLQLVGA VT++ IY+VN+R S
Sbjct: 329 IFGFLYLGETLSPLQLVGALVTILGIYMVNYRDS 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569422|ref|XP_003552900.1| PREDICTED: uncharacterized transporter sll0355-like [Glycine max]

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 205/414 (49%), Positives = 248/414 (59%), Gaps = 76/414 (18%)

Query: 2   AWWSSASASSTFNSSFLLR--SSLSSYSNKKLSSNHVAHAPPSLFSPYITINSFKKRCII 59
           +WW S+ +++   S+   R  S LS  S  ++ +      PPS F+ + T     +  + 
Sbjct: 3   SWWCSSPSATLTVSTTTTRHFSLLSHTSQFRIQTLTF---PPSSFTRFTTAPPSLRFRVP 59

Query: 60  VTNCTTTNKKNMESSSTVDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLL--- 116
            +N T    +  E    VDCV TG DVECL+   + EE + E             +L   
Sbjct: 60  CSNKTAFETELPEDG--VDCVGTGQDVECLV---NTEEKQSEPSSSSSSSSSSSSMLCLA 114

Query: 117 ----EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAF-----------------RLIPA 155
               E AVLVSPFFFWGTAMVAMKEVLPK G FFV+AF                 R +P+
Sbjct: 115 EALWEGAVLVSPFFFWGTAMVAMKEVLPKCGPFFVSAFRLIPAGFLLVAFAASRGRTLPS 174

Query: 156 GL---------LLITFASSQG------RKLPSGFN-----------AWVSIFLFA----- 184
           G           L+  A  QG      ++  +G             A ++  LF      
Sbjct: 175 GFNAWLSITLFALVDAACFQGFLAEGLQRTSAGLGSVIIDSQPLTVAVLAALLFGESIGV 234

Query: 185 ---------LVDASCFQAPA--FDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSD 233
                    ++     + PA  FDESN SLWGSGEWWMLLAAQSMA+GTVMVRWVSKYSD
Sbjct: 235 VGAAGLVLGVIGLVLLELPALSFDESNFSLWGSGEWWMLLAAQSMAIGTVMVRWVSKYSD 294

Query: 234 PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFY 293
           PVMATGWHMVIGGLPL++ +VLN+DP    S+KE +S+DILALLYTSIFGSA+SYGV+FY
Sbjct: 295 PVMATGWHMVIGGLPLVLFAVLNNDPAVSLSLKEYSSTDILALLYTSIFGSAVSYGVFFY 354

Query: 294 SATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347
           SATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSP+QLVGA VTV  IY+VNFR
Sbjct: 355 SATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPVQLVGALVTVAGIYMVNFR 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537734|ref|XP_003537380.1| PREDICTED: uncharacterized transporter sll0355-like [Glycine max]

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 187/344 (54%), Positives = 219/344 (63%), Gaps = 62/344 (18%)

Query: 66  TNKKNMESS---STVDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLV 122
           +NK   E+      VDCV TG DVECL++  +K+            +     L E AVLV
Sbjct: 65  SNKTAFETELPEDGVDCVGTGQDVECLVNTEEKQSEPTSSSSSSSMLCLAEALWEGAVLV 124

Query: 123 SPFFFWGTAMVAMKEVLPKAGTFFVAAF-----------------RLIPAGLL------- 158
           SPFFFWGTAMVAMKEVLPK G FFV+AF                 R +P+G +       
Sbjct: 125 SPFFFWGTAMVAMKEVLPKCGPFFVSAFRLIPAGFLLVAFAASRGRSLPSGFIAWLSITL 184

Query: 159 --LITFASSQG------RKLPSGFN-----------AWVSIFLFA--------------L 185
             L+     QG      ++  +G             A ++  LF               +
Sbjct: 185 FALVDATCFQGFLAEGLQRTSAGLGSIIIDSQPLTVAVLAALLFGESIGVVGAAGLVLGV 244

Query: 186 VDASCFQAPA--FDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMV 243
           +     + PA  FDESN SLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMV
Sbjct: 245 IGLVLLELPALSFDESNFSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMV 304

Query: 244 IGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKL 303
           IGGLPL++ +VLN+DP    S+KE +S+DILALLYTS+FGSA+SYGV+FYSATKGSLTKL
Sbjct: 305 IGGLPLVLFAVLNNDPALSLSLKEYSSTDILALLYTSVFGSAVSYGVFFYSATKGSLTKL 364

Query: 304 SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347
           SSLTFLTPMFASIFGFLYLGETFSP+QLVGA VTV  IY+VN R
Sbjct: 365 SSLTFLTPMFASIFGFLYLGETFSPVQLVGALVTVAGIYMVNLR 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828730|ref|XP_002882247.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297328087|gb|EFH58506.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  300 bits (769), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 194/395 (49%), Positives = 240/395 (60%), Gaps = 74/395 (18%)

Query: 20  RSSLSSYSNKKLSSNHVAHAPPSLF-SPYITINSFKKRC---IIVTNCTTTNKKNMESSS 75
           R + SS +NK  S+  V     S F S +I ++ FK+R     +V   TT+NK   E+ S
Sbjct: 31  RRANSSCANKYPSNILVKSLRHSRFDSKHILVSIFKRRINGDSVVRRSTTSNKSTEETES 90

Query: 76  T----VDCVETGTDVECLISPTDKEEIEQEQVEQDGQVMELGMLLEWAVLVSPFFFW--- 128
           +    VDCV  G+DVEC+ +  D EE     +   G+    G LLEW VL+SPFFFW   
Sbjct: 91  SSSSSVDCVGMGSDVECVYNGED-EENRSSGILNGGE----GTLLEWTVLISPFFFWGTA 145

Query: 129 -----------GTAMVAMKEVLPKAGTFFVA----AFRLIPAGL---------LLITFAS 164
                      G   VA   ++P AG   VA      R +P G+          L+    
Sbjct: 146 MVAMKEVLPITGPFFVAAFRLIP-AGLLLVAFAVYKARPLPKGINAWLSIALFALVDATC 204

Query: 165 SQG------RKLPSGFN-----------AWVSIFLFA--------------LVDASCFQA 193
            QG      ++  +G             A ++ FLF               +      + 
Sbjct: 205 FQGFLAQGLQRTSAGLGSVIIDSQPLTVAVLASFLFGESIGIVRAGGLLLGVAGLLLLEV 264

Query: 194 PAF--DESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMV 251
           P+   D +N SLWGSGEWWMLLAAQSMA+GTVMVRWVSKYSDP+MATGWHMVIGGLPL+ 
Sbjct: 265 PSVTSDGNNFSLWGSGEWWMLLAAQSMAIGTVMVRWVSKYSDPIMATGWHMVIGGLPLLA 324

Query: 252 ISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTP 311
           ISV+NHDPV+  S++EL+++D++ALLYTSIFGSA+SYGVYFYSATKGSLTKLSSLTFLTP
Sbjct: 325 ISVINHDPVFNGSLQELSTNDVIALLYTSIFGSAVSYGVYFYSATKGSLTKLSSLTFLTP 384

Query: 312 MFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346
           MFASIFG+LYL ETFS LQLVGAAVT+VAIYLVNF
Sbjct: 385 MFASIFGYLYLNETFSSLQLVGAAVTLVAIYLVNF 419

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22128715|gb|AAM92827.1| unknown protein [Oryza sativa Japonica Group]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 172/348 (49%), Positives = 210/348 (60%), Gaps = 76/348 (21%)

Query: 74  SSTVDCVETGTDVECLISPTDK----------EEIEQEQVEQDGQVMELGMLL-----EW 118
              VDCV TGTDVEC +                 + +E  E+DG       L+     EW
Sbjct: 89  QDAVDCVGTGTDVECFVDGPGAGAGVGAEPLLARVSEE--EEDGVSASAAALVGREWWEW 146

Query: 119 AVLVSPFFFWGTAMVAMKEVLPKAG-----------------TFFVAAFRLIPAGLL--- 158
           A LVSPFFFWGTAMVAMK V+PK G                  F  A  R  P+G     
Sbjct: 147 ASLVSPFFFWGTAMVAMKGVIPKTGPFFVAALRLLPAGALLVAFAAARGRRQPSGWAAWV 206

Query: 159 ------LITFASSQG------RKLPSGFNAWV---SIFLFALVDASCF------------ 191
                 L+  A  QG      +K  +G  + +        A++ A  F            
Sbjct: 207 AVAAFGLVDAACFQGFLAEGLQKTSAGLGSVIIDSQPLTVAVLAALLFGESIGAIGVGGL 266

Query: 192 ----------QAPAF--DESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATG 239
                     + PA   + +++++WGSGEWWM L+AQSMAVGT+MVRWVSKYSDP+MATG
Sbjct: 267 VLGVVGLLLLEVPALSVEGNDTAIWGSGEWWMFLSAQSMAVGTIMVRWVSKYSDPIMATG 326

Query: 240 WHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGS 299
           WHM+IGGLPL+VISVLNHDP     ++ELT +D+LALLYTSIFGSAISYGVYFY+AT+GS
Sbjct: 327 WHMIIGGLPLLVISVLNHDPALNGHLQELTLNDVLALLYTSIFGSAISYGVYFYNATRGS 386

Query: 300 LTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347
           LT LSSLTFLTPMFASIFGFLYLGETFSP+QL GA +T+VAIY+VN++
Sbjct: 387 LTTLSSLTFLTPMFASIFGFLYLGETFSPVQLGGALLTLVAIYMVNYK 434

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125532481|gb|EAY79046.1| hypothetical protein OsI_34156 [Oryza sativa Indica Group]

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 172/348 (49%), Positives = 210/348 (60%), Gaps = 76/348 (21%)

Query: 74  SSTVDCVETGTDVECLISPTDK----------EEIEQEQVEQDGQVMELGMLL-----EW 118
              VDCV TGTDVEC +                 + +E  E+DG       L+     EW
Sbjct: 89  QDAVDCVGTGTDVECFVDGPGAGAGVGAEPLLARVSEE--EEDGVSASAAALVGREWWEW 146

Query: 119 AVLVSPFFFWGTAMVAMKEVLPKAG-----------------TFFVAAFRLIPAGLL--- 158
           A LVSPFFFWGTAMVAMK V+PK G                  F  A  R  P+G     
Sbjct: 147 ASLVSPFFFWGTAMVAMKGVIPKTGPFFVAALRLLPAGALLVAFAAARGRRQPSGWAAWV 206

Query: 159 ------LITFASSQG------RKLPSGFNAWV---SIFLFALVDASCF------------ 191
                 L+  A  QG      +K  +G  + +        A++ A  F            
Sbjct: 207 AVAAFGLVDAACFQGFLAEGLQKTSAGLGSVIIDSQPLTVAVLAALLFGESIGAIGVGGL 266

Query: 192 ----------QAPAF--DESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATG 239
                     + PA   + +++++WGSGEWWM L+AQSMAVGT+MVRWVSKYSDP+MATG
Sbjct: 267 VLGVVGLLLLEVPALSVEGNDTAIWGSGEWWMFLSAQSMAVGTIMVRWVSKYSDPIMATG 326

Query: 240 WHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGS 299
           WHM+IGGLPL+VISVLNHDP     ++ELT +D+LALLYTSIFGSAISYGVYFY+AT+GS
Sbjct: 327 WHMIIGGLPLLVISVLNHDPALNGHLQELTLNDVLALLYTSIFGSAISYGVYFYNATRGS 386

Query: 300 LTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347
           LT LSSLTFLTPMFASIFGFLYLGETFSP+QL GA +T+VAIY+VN++
Sbjct: 387 LTTLSSLTFLTPMFASIFGFLYLGETFSPVQLGGALLTLVAIYMVNYK 434

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119940|ref|XP_002318202.1| predicted protein [Populus trichocarpa] gi|222858875|gb|EEE96422.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (733), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 170/277 (61%), Positives = 190/277 (68%), Gaps = 59/277 (21%)

Query: 132 MVAMKEVLPKAGTFFVAAF-----------------RLIPAGL---LLITFAS------- 164
           MVAMKEVLP  G FFV++F                 R +P+GL   L IT  +       
Sbjct: 1   MVAMKEVLPLTGPFFVSSFRLIPAGLLLVAFAGFKGRPLPSGLTAWLTITLFALVDASCF 60

Query: 165 ----SQG-RKLPSGFN-----------AWVSIFLFA----LVDASCF----------QAP 194
               +QG ++  +G             A ++  LF     +V AS            + P
Sbjct: 61  QGFLAQGLQRTSAGLGSVIIDSQPLTVAILANLLFGESIGIVGASGLVLGVIGLLLLEVP 120

Query: 195 A--FDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVI 252
              FDESN SLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPL+ I
Sbjct: 121 TLTFDESNFSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLLAI 180

Query: 253 SVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPM 312
           SVLNHDP +  S+K+LT+SDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPM
Sbjct: 181 SVLNHDPAFNLSLKDLTASDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPM 240

Query: 313 FASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 349
           FASIFGFLYLGETFSPLQL GA VTVVAIY+VN+R S
Sbjct: 241 FASIFGFLYLGETFSPLQLAGAIVTVVAIYMVNYRNS 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242039249|ref|XP_002467019.1| hypothetical protein SORBIDRAFT_01g018390 [Sorghum bicolor] gi|241920873|gb|EER94017.1| hypothetical protein SORBIDRAFT_01g018390 [Sorghum bicolor]

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 168/348 (48%), Positives = 210/348 (60%), Gaps = 76/348 (21%)

Query: 76  TVDCVETGTDVECLISPTDKE-----------------EIEQEQVEQDGQVMELGMLLEW 118
           ++DCV TG+DVECLI    K+                 + + ++ E D   +   +L EW
Sbjct: 62  SLDCVGTGSDVECLIDAGAKDAASPLLPARSPAAPGASKDDGKKSEGDAAAVSASLLWEW 121

Query: 119 AVLVSPFFFWGTAMVAMK--------------EVLPKAG---TFFVAAFRLIPAG----- 156
           A LVSPFFFWGTAMVAMK               +LP       F  A  R  PAG     
Sbjct: 122 ASLVSPFFFWGTAMVAMKGVIPRTGPFFVAALRLLPAGALLVAFAAARGRKQPAGWEAWL 181

Query: 157 ----LLLITFASSQG------RKLPSGFN-----------AWVSIFLFA----------- 184
                 LI  A  QG      +K  +G             A ++  LF            
Sbjct: 182 AIAAFGLIDAACFQGFLAEGLQKTSAGLGSVIIDSQPLTVAILASLLFGESIGAVGVGGL 241

Query: 185 ---LVDASCFQAPAF--DESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATG 239
              +V     + PA   + +++++WGSGEW M L+AQSMAVGT+MVRWVSKYSDP+MATG
Sbjct: 242 VLGVVGLLLLEVPALSIEGNDTTIWGSGEWLMFLSAQSMAVGTIMVRWVSKYSDPIMATG 301

Query: 240 WHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGS 299
           WHM+IGGLPL+VISVLNHDP     +++LT SDILAL YTSIFGSA+SYGVYFY+AT+GS
Sbjct: 302 WHMIIGGLPLLVISVLNHDPALSGHIQDLTLSDILALGYTSIFGSAVSYGVYFYNATRGS 361

Query: 300 LTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR 347
           LT LSSLTFLTPMFAS+FG+LYLGETFSP+QL GA +T+VAIY+VN++
Sbjct: 362 LTTLSSLTFLTPMFASVFGYLYLGETFSPVQLGGALLTLVAIYMVNYK 409

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579425|ref|XP_002530556.1| Protein pecM, putative [Ricinus communis] gi|223529894|gb|EEF31824.1| Protein pecM, putative [Ricinus communis]

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 133/160 (83%), Positives = 146/160 (91%), Gaps = 2/160 (1%)

Query: 192 QAPAF--DESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPL 249
           + PA   D+SN SLWGSGEWWMLLAAQSMAVGTVMVRWV+KYSDPVMATGWHMVIGGLPL
Sbjct: 260 EVPALSIDQSNFSLWGSGEWWMLLAAQSMAVGTVMVRWVTKYSDPVMATGWHMVIGGLPL 319

Query: 250 MVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFL 309
            VIS+LNHDP++  S++ELT SDI ALLYTSIFGSAISYGV+FYSATKGSLTKLSSLTFL
Sbjct: 320 TVISILNHDPLFNGSLQELTVSDIAALLYTSIFGSAISYGVFFYSATKGSLTKLSSLTFL 379

Query: 310 TPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS 349
           TPMFASIFGFLYLGETFSPLQL GAAVT+VAIY++   G+
Sbjct: 380 TPMFASIFGFLYLGETFSPLQLFGAAVTLVAIYMLGPPGA 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6957732|gb|AAF32476.1| unknown protein [Arabidopsis thaliana]

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 126/150 (84%), Positives = 143/150 (95%)

Query: 197 DESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLN 256
           D +N SLWGSGEWWMLLAAQSMA+GTVMVRWVSKYSDP+MATGWHMVIGGLPL+ ISV+N
Sbjct: 278 DGNNFSLWGSGEWWMLLAAQSMAIGTVMVRWVSKYSDPIMATGWHMVIGGLPLLAISVIN 337

Query: 257 HDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASI 316
           HDPV+  S+++L+++D++ALLYTSIFGSA+SYGVYFYSATKGSLTKLSSLTFLTPMFASI
Sbjct: 338 HDPVFNGSLQDLSTNDVIALLYTSIFGSAVSYGVYFYSATKGSLTKLSSLTFLTPMFASI 397

Query: 317 FGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346
           FG+LYL ETFS LQLVGAAVT+VAIYLVNF
Sbjct: 398 FGYLYLNETFSSLQLVGAAVTLVAIYLVNF 427

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2076954	417	AT3G02690 [Arabidopsis thalian	0.428	0.359	0.726	1.1e-57
TIGR_CMR|SPO_3584	306	SPO_3584 "membrane protein, dr	0.348	0.398	0.297	3.4e-11
UNIPROTKB|Q3Z7M8	287	DET1056 "Membrane protein, put	0.382	0.466	0.297	5.1e-08
TIGR_CMR|DET_1056	287	DET_1056 "membrane protein, pu	0.382	0.466	0.297	5.1e-08
UNIPROTKB|P0AA70	306	yedA "putative membrane transp	0.374	0.428	0.301	5.4e-08
TIGR_CMR|BA_0829	303	BA_0829 "transporter, EamA fam	0.382	0.442	0.242	2.4e-07
UNIPROTKB|Q3AAZ7	303	CHY_1867 "Putative membrane pr	0.385	0.445	0.257	5.3e-07
TIGR_CMR|CHY_1867	303	CHY_1867 "putative membrane pr	0.385	0.445	0.257	5.3e-07
UNIPROTKB|Q8E8X4	284	SO_4527 "10 TMS drug/metabolit	0.322	0.397	0.221	5.4e-07
TIGR_CMR|SO_4527	284	SO_4527 "integral membrane dom	0.322	0.397	0.221	5.4e-07

TAIR|locus:2076954 AT3G02690 [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 109/150 (72%), Positives = 126/150 (84%)

Query:   197 DESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLN 256
             D +N SLWGSGEWWMLLAAQSMA+GTVMVRWVSKYSDP+MATGWHMVIGGLPL+ ISV+N
Sbjct:   263 DGNNFSLWGSGEWWMLLAAQSMAIGTVMVRWVSKYSDPIMATGWHMVIGGLPLLAISVIN 322

Query:   257 HDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYXXXXXXXXXXXXXXXXXPMFASI 316
             HDPV+  S+++L+++D++ALLYTSIFGSA+SYGVYFY                 PMFASI
Sbjct:   323 HDPVFNGSLQDLSTNDVIALLYTSIFGSAVSYGVYFYSATKGSLTKLSSLTFLTPMFASI 382

Query:   317 FGFLYLGETFSPLQLVGAAVTVVAIYLVNF 346
             FG+LYL ETFS LQLVGAAVT+VAIYLVNF
Sbjct:   383 FGYLYLNETFSSLQLVGAAVTLVAIYLVNF 412

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;ISS

TIGR_CMR|SPO_3584 SPO_3584 "membrane protein, drug/metabolite transporter (DMT) family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 137 (53.3 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
 Identities = 39/131 (29%), Positives = 66/131 (50%)

Query:   215 AQSMAVGTVMVR-WVSKYSDPVMA-TGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSD 272
             A SMAVG V+ R W  +   P++  T W +  GGL L+ ++ L      G     L+ ++
Sbjct:   156 ALSMAVGVVLTRKW--RPDVPLVTFTAWQLTAGGLLLIPVAWLAAPDWPG-----LSLTN 208

Query:   273 ILALLYTSIFGSAISYGVYFYXXXXXXXXXXXXXXXXXPMFASIFGFLYLGETFSPLQLV 332
             + AL +  + G A++Y ++F                  P+ A I G+L LGE  SP+Q +
Sbjct:   209 LAALAWLGLIGGALTYILWFRGLARIEPAAVSLLGILSPLTAVILGWLALGEALSPVQGL 268

Query:   333 GAAVTVVAIYL 343
             GA + + A+++
Sbjct:   269 GAVIVLGAVWI 279

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q3Z7M8 DET1056 "Membrane protein, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 147 (56.8 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 42/141 (29%), Positives = 68/141 (48%)

Query:   209 WWMLLAAQSMAVGTVMVR-WVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKE 267
             +W+LLAA   ++  V  R  + KYS    +T  + +  G  L+++      P   + + E
Sbjct:   150 FWVLLAALFTSIYIVFQRPLLKKYSGFEFST--YAIWAGTLLLMVGA----PGLLKEISE 203

Query:   268 LTSSDILALLYTSIFGSAISYGVYFYXXXXXXXXXXXXXXXXXPMFASIFGFLYLGETFS 327
               +S  LA++Y  IF +AISY +Y Y                 P+FA    FL+LGE  +
Sbjct:   204 APASSTLAVVYLGIFPTAISYLLYSYALSKARISQVISFLYLNPVFAIGIAFLWLGEIPA 263

Query:   328 PLQLVGAAVTVVAIYLVNFRG 348
             P+ L+G  + +  + LVN  G
Sbjct:   264 PISLLGGLLALAGVILVNRYG 284

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1056 DET_1056 "membrane protein, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 147 (56.8 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 42/141 (29%), Positives = 68/141 (48%)

Query:   209 WWMLLAAQSMAVGTVMVR-WVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKE 267
             +W+LLAA   ++  V  R  + KYS    +T  + +  G  L+++      P   + + E
Sbjct:   150 FWVLLAALFTSIYIVFQRPLLKKYSGFEFST--YAIWAGTLLLMVGA----PGLLKEISE 203

Query:   268 LTSSDILALLYTSIFGSAISYGVYFYXXXXXXXXXXXXXXXXXPMFASIFGFLYLGETFS 327
               +S  LA++Y  IF +AISY +Y Y                 P+FA    FL+LGE  +
Sbjct:   204 APASSTLAVVYLGIFPTAISYLLYSYALSKARISQVISFLYLNPVFAIGIAFLWLGEIPA 263

Query:   328 PLQLVGAAVTVVAIYLVNFRG 348
             P+ L+G  + +  + LVN  G
Sbjct:   264 PISLLGGLLALAGVILVNRYG 284

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|P0AA70 yedA "putative membrane transport protein" [Escherichia coli K-12 (taxid:83333)]

 Score = 119 (46.9 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
 Identities = 44/146 (30%), Positives = 67/146 (45%)

Query:   206 SGEWW----MLLAAQSMAVGTVMVRWVSKYSDPV--MATGWHMVIGGLPLMVISVLNHDP 259
             SG  W    +L+ + S A G+V   + S+ + PV  MA    M+  G+ LM+ S+     
Sbjct:   146 SGNPWGAILILIGSISWAFGSV---YGSRITLPVGMMAGAIEMLAAGVVLMIASM----- 197

Query:   260 VYGESVKELTS-SDILALLYTSIFGSAISYGVYFYXXXXXXXXXXXXXXXXXPMFASIFG 318
             + GE +  L S S  LA+ Y ++FGS I+   Y Y                 P+ A + G
Sbjct:   198 IAGEKLTALPSLSGFLAVGYLALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLG 257

Query:   319 FLYLGETFSPLQLVGAAVTVVAIYLV 344
                 GET S ++ +   V V A+ LV
Sbjct:   258 TGLGGETLSKIEWLALGVIVFAVVLV 283

GO:0055085 "transmembrane transport" evidence=IMP;RCA

GO:0022857 "transmembrane transporter activity" evidence=IMP;RCA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IEA

TIGR_CMR|BA_0829 BA_0829 "transporter, EamA family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 142 (55.0 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 34/140 (24%), Positives = 66/140 (47%)

Query:   204 WGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGE 263
             + SG+ WM+ A     + +V  +W +K + P+MAT +  + G + L+  ++ +       
Sbjct:   150 FNSGDLWMIAAVCIWGIYSVCSKWATKTTTPLMATLYSGIFGVILLLPFNIGSF------ 203

Query:   264 SVKELTSSDILALLYTSIFGSAISYGVYFYXXXXXXXXXXXXXXXXXPMFASIFGFLYLG 323
             +V  + +S I +LLYT +  + +    +                   P+F +I  FL+LG
Sbjct:   204 TVTNINTSFITSLLYTGLISTVLCMVFWNIGVQKLGATTSGIFLNFNPIFTAILAFLFLG 263

Query:   324 ETFSPLQLVGAAVTVVAIYL 343
             E  + +Q+VG  + +   YL
Sbjct:   264 EELTWIQIVGTMIVMTGCYL 283

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

UNIPROTKB|Q3AAZ7 CHY_1867 "Putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 139 (54.0 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 36/140 (25%), Positives = 66/140 (47%)

Query:   211 MLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTS 270
             ++LAA +  + TV+ +  S+ +D V+   +  ++G + L+ I +L H P++      L  
Sbjct:   155 LILAAVTYGLYTVLGKRFSQKTDSVIMNSFSFILGSVFLLPIILLKHYPLFS-----LQP 209

Query:   271 SDILALLYTSIFGSAISYGVYFYXXXXXXXXXXXXXXXXXPMFASIFGFLYLGETFSPLQ 330
               IL + Y + F + ++Y  YF                  P+ AS F +  LGE  +   
Sbjct:   210 KAILPMAYLTFFVTGLAYYTYFLGLTNISAGNGSMVFFIKPVLASFFAWAILGEKITFEF 269

Query:   331 LVGAAVTVVAIYLVNFRGSV 350
             + G  V ++ IY+V + G V
Sbjct:   270 IAGTMVILLGIYIVQWAGQV 289

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_1867 CHY_1867 "putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 139 (54.0 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 36/140 (25%), Positives = 66/140 (47%)

Query:   211 MLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTS 270
             ++LAA +  + TV+ +  S+ +D V+   +  ++G + L+ I +L H P++      L  
Sbjct:   155 LILAAVTYGLYTVLGKRFSQKTDSVIMNSFSFILGSVFLLPIILLKHYPLFS-----LQP 209

Query:   271 SDILALLYTSIFGSAISYGVYFYXXXXXXXXXXXXXXXXXPMFASIFGFLYLGETFSPLQ 330
               IL + Y + F + ++Y  YF                  P+ AS F +  LGE  +   
Sbjct:   210 KAILPMAYLTFFVTGLAYYTYFLGLTNISAGNGSMVFFIKPVLASFFAWAILGEKITFEF 269

Query:   331 LVGAAVTVVAIYLVNFRGSV 350
             + G  V ++ IY+V + G V
Sbjct:   270 IAGTMVILLGIYIVQWAGQV 289

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q8E8X4 SO_4527 "10 TMS drug/metabolite efflux pump (DME) family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 99 (39.9 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
 Identities = 27/122 (22%), Positives = 58/122 (47%)

Query:   226 RWVSKYS--DPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDIL-ALLYTSIF 282
             RW+ ++   D ++ T W +++GGL L+ ++ L   P       ++ S D++ +L++ +  
Sbjct:   154 RWMQRWDVGDFLVLTAWQLLLGGLMLIPLAWLMAGP------PQIPSMDVVPSLIWLATA 207

Query:   283 GSAISYGVYFYXXXXXXXXXXXXXXXXXPMFASIFGFLYLGETFSPLQLVGAAVTVVAIY 342
              +A++Y  + +                 P+ A   G L +GET    Q  G  V ++++ 
Sbjct:   208 NTAVAYWAWLWSMRNLGPEIMGMVALVNPVVAVSLGVLIVGETLDMRQWAGILVILLSLL 267

Query:   343 LV 344
             L+
Sbjct:   268 LM 269

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_4527 SO_4527 "integral membrane domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 99 (39.9 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
 Identities = 27/122 (22%), Positives = 58/122 (47%)

Query:   226 RWVSKYS--DPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDIL-ALLYTSIF 282
             RW+ ++   D ++ T W +++GGL L+ ++ L   P       ++ S D++ +L++ +  
Sbjct:   154 RWMQRWDVGDFLVLTAWQLLLGGLMLIPLAWLMAGP------PQIPSMDVVPSLIWLATA 207

Query:   283 GSAISYGVYFYXXXXXXXXXXXXXXXXXPMFASIFGFLYLGETFSPLQLVGAAVTVVAIY 342
              +A++Y  + +                 P+ A   G L +GET    Q  G  V ++++ 
Sbjct:   208 NTAVAYWAWLWSMRNLGPEIMGMVALVNPVVAVSLGVLIVGETLDMRQWAGILVILLSLL 267

Query:   343 LV 344
             L+
Sbjct:   268 LM 269

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93V85	WTR16_ARATH	No assigned EC number	0.84	0.4142	0.3477	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
pfam00892	126	pfam00892, EamA, EamA-like transporter family	3e-18
TIGR00950	260	TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Tran	4e-15
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	2e-13
PRK11272	292	PRK11272, PRK11272, putative DMT superfamily trans	2e-10
PRK11453	299	PRK11453, PRK11453, O-acetylserine/cysteine export	3e-05
COG2510	140	COG2510, COG2510, Predicted membrane protein [Func	2e-04
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	0.002
pfam13536	112	pfam13536, EmrE, Multidrug resistance efflux trans	0.004

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 79.2 bits (196), Expect = 3e-18
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 5/130 (3%)

Query: 217 SMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILAL 276
           S A+  V  + + +   P+  T +  +I G+ L+++  L       +    L+   ILAL
Sbjct: 2   SWALYFVFSKKLLERISPLTFTAYRFLIAGILLILLLFL-----LRKPFALLSLKAILAL 56

Query: 277 LYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAV 336
           LY  +FG+A+ Y +YFY+    S +  S +T L+P+F  I   L LGE  +  QL+G  +
Sbjct: 57  LYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIVL 116

Query: 337 TVVAIYLVNF 346
            ++ + L+  
Sbjct: 117 ILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 199 SNSSLWGSGEWWMLLAAQSMAVGTVMV-RWVSKYSDP-VMATGWHMVIGGLPLMVISVLN 256
            N S+  +G    L +  S A+GTV+  R V K     +  TGW +++G L L+  +   
Sbjct: 121 GNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFL 180

Query: 257 HDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASI 316
                     +  S    ALLY  + G+A++Y ++    T    +  S L    P+ A +
Sbjct: 181 ------GPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALL 234

Query: 317 FGFLYLGETFSPLQLVGAAVTVVA 340
            G L LGET S  QL+G A+ + A
Sbjct: 235 LGLLILGETLSLPQLIGGALIIAA 258

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 260

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 69.1 bits (169), Expect = 2e-13
 Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 12/196 (6%)

Query: 152 LIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQAPAFDESNSSLWGSGEWWM 211
           L+P    L+      G +L     + + I    L  A              L   G    
Sbjct: 105 LLPLFTALLAVLLLLGERL-----SLLQILGILLALAGVLLILLGGGGGGILSLLGLLLA 159

Query: 212 LLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSS 271
           L AA   A+ T +V+ +S+     +A    +++  L L++  +             + S 
Sbjct: 160 LAAALLWALYTALVKRLSRLGPVTLALLLQLLLALLLLLLFFLSGFGAP-------ILSR 212

Query: 272 DILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQL 331
             L LLY  +F + ++Y +++Y+      + ++ L+ L P+FA++ G L LGE  SP QL
Sbjct: 213 AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQL 272

Query: 332 VGAAVTVVAIYLVNFR 347
           +GAA+ V+ + L + R
Sbjct: 273 LGAALVVLGVLLASLR 288

Length = 292

>gnl|CDD|183067 PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 72/288 (25%), Positives = 115/288 (39%), Gaps = 69/288 (23%)

Query: 115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPS-- 172
           L  +  L + +  WG+  + ++  +       +A  R + AG+LL+ F   +G  LP+  
Sbjct: 7   LPLFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLR 66

Query: 173 -----------------GF-----NAWVSIFLFALVDASCFQAPAFDESNSSLWG----S 206
                            G      +  V   + A+V A+    P F    S L+G     
Sbjct: 67  QWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVAT---VPLFTLCFSRLFGIRTRK 123

Query: 207 GEWW---------------------------MLLAAQSMAVGTVMVRWVSKYSDPV--MA 237
            EW                            +L+A+ S A G+V   W S+   PV  MA
Sbjct: 124 LEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSV---WSSRLPLPVGMMA 180

Query: 238 TGWHMVIGGLPLMVISVLNHDPVYGESVKEL-TSSDILALLYTSIFGSAISYGVYFYSAT 296
               M+  G+ L++ S+L+     GE +  L T S  LAL Y ++FGS I+   Y Y   
Sbjct: 181 GAAEMLAAGVVLLIASLLS-----GERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLR 235

Query: 297 KGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV 344
                  +S  ++ P+ A + G    GET SP++ +   V V A+ LV
Sbjct: 236 NVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLV 283

Length = 292

>gnl|CDD|183142 PRK11453, PRK11453, O-acetylserine/cysteine export protein; Provisional

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 4/139 (2%)

Query: 212 LLAAQSMAVGTVMVRWVSKYSD--PVMA-TGWHMVIGGLPLMVISVLNHDP-VYGESVKE 267
           L AA S A G +  + +  +S    VM+   W  +I  +P  V S++         S+  
Sbjct: 149 LAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVT 208

Query: 268 LTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFS 327
           +  + IL+L+Y +   + + YG++     +    +++ L+ L P+       L L E  +
Sbjct: 209 IDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLT 268

Query: 328 PLQLVGAAVTVVAIYLVNF 346
            LQ +GA + +  +Y+  F
Sbjct: 269 GLQFLGAVLIMAGLYINVF 287

Length = 299

>gnl|CDD|225308 COG2510, COG2510, Predicted membrane protein [Function unknown]

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 210 WMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELT 269
           + LL+A    +  +  +   +  DP  AT    ++  L  ++I +L    V G   +   
Sbjct: 7   YALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVI-LIFLLIVLL----VTGNW-QAGG 60

Query: 270 SSDILALLYTSIFG--SAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFS 327
                + L+  + G    +S+ +YF +  KG  +++  L   + + A +   L+LGE  S
Sbjct: 61  EIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLS 120

Query: 328 PLQLVGAAVTVVAIYLVNFR 347
               +G  + V+   LV+ R
Sbjct: 121 LPTWIGIVLIVIGAILVSLR 140

Length = 140

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 210 WMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELT 269
            +LL      +  + ++   +  DP +       +    L++  +L              
Sbjct: 11  ALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-----EPRGLRPA 65

Query: 270 SSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFG-FLYLGETFSP 328
               L LL  ++ G A+ + + F +    S +  S +  L P+F ++    L LGE  S 
Sbjct: 66  LRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSL 125

Query: 329 LQLVGAAVTVVAIYLVNFRG 348
           LQ++G  + +  + L+   G
Sbjct: 126 LQILGILLALAGVLLILLGG 145

Length = 292

>gnl|CDD|222207 pfam13536, EmrE, Multidrug resistance efflux transporter

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 262 GESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLY 321
           G+  + L +   L L+   + G  + Y +   +   G    + ++T LTP+FA++ G L 
Sbjct: 23  GDVFRALKTKPWLWLILAGLIG-FLFYALLCLALQYGPGW-VVAITALTPVFAALLGRLL 80

Query: 322 LGETFSPLQLVGAAVTVVAIYLVN 345
             +     +L+ +A+ +  + L+ 
Sbjct: 81  FKQRLPKRELLASAIILAGVVLMQ 104

This is a membrane protein family acting as a multidrug resistance efflux transporter. Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.94
PRK11272	292	putative DMT superfamily transporter inner membran	99.93
PRK11689	295	aromatic amino acid exporter; Provisional	99.92
PLN00411	358	nodulin MtN21 family protein; Provisional	99.91
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.91
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.87
PRK15430	296	putative chloramphenical resistance permease RarD;	99.85
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.82
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.8
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.78
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.77
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.73
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.67
COG2510	140	Predicted membrane protein [Function unknown]	99.67
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.66
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.6
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.57
COG2962	293	RarD Predicted permeases [General function predict	99.5
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.41
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.25
PRK15430	296	putative chloramphenical resistance permease RarD;	99.24
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.22
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.16
KOG2765	416	consensus Predicted membrane protein [Function unk	99.08
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.05
PLN00411	358	nodulin MtN21 family protein; Provisional	99.03
PRK11272	292	putative DMT superfamily transporter inner membran	99.02
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.92
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.89
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.87
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.87
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.85
PRK11689	295	aromatic amino acid exporter; Provisional	98.82
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.71
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.69
COG2962	293	RarD Predicted permeases [General function predict	98.68
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.67
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.52
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.52
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.44
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.33
KOG1580	337	consensus UDP-galactose transporter related protei	98.02
KOG1581	327	consensus UDP-galactose transporter related protei	97.98
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.93
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.89
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.88
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.87
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.87
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	97.85
COG2076	106	EmrE Membrane transporters of cations and cationic	97.78
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.77
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	97.7
PRK11431	105	multidrug efflux system protein; Provisional	97.62
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.58
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.52
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.51
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.49
PRK13499	345	rhamnose-proton symporter; Provisional	97.44
KOG1443	349	consensus Predicted integral membrane protein [Fun	97.38
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.37
KOG2766	336	consensus Predicted membrane protein [Function unk	97.3
PRK13499	345	rhamnose-proton symporter; Provisional	97.3
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.29
KOG1582	367	consensus UDP-galactose transporter related protei	96.81
COG2510	140	Predicted membrane protein [Function unknown]	96.72
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	96.71
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	96.61
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	96.6
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	96.52
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.5
KOG3912	372	consensus Predicted integral membrane protein [Gen	96.45
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.4
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	96.22
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	95.73
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	94.82
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	94.41
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	93.96
KOG2922	335	consensus Uncharacterized conserved protein [Funct	93.85
PRK02237	109	hypothetical protein; Provisional	93.55
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	93.33
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	93.32
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	92.2
KOG2765	416	consensus Predicted membrane protein [Function unk	91.84
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	91.66
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	90.85
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	89.07
KOG3912	372	consensus Predicted integral membrane protein [Gen	87.58
KOG1580	337	consensus UDP-galactose transporter related protei	86.03
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	82.42
COG1742	109	Uncharacterized conserved protein [Function unknow	81.84
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	81.49

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.94  E-value=1.3e-24  Score=203.85  Aligned_cols=227  Identities=17%  Similarity=0.187  Sum_probs=177.1

Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHH---
Q 018761          113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDAS---  189 (350)
Q Consensus       113 ~~~~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~---  189 (350)
                      ++.+++.++++++++|+++++++|.+.+++||.++.++|++++.++++++...++++  .+++++...+..|++...   
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~   86 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLR--FAKEQRLPLLFYGVSLGGMNY   86 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhcc--CCHHHHHHHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999999999999998876443322  234555555555543221   


Q ss_pred             -Hhcc----------------c--------------------------cC-CC-CCCcchhHHHHHHHHHHHHHHHHHHH
Q 018761          190 -CFQA----------------P--------------------------AF-DE-SNSSLWGSGEWWMLLAAQSMAVGTVM  224 (350)
Q Consensus       190 -~~~~----------------P--------------------------~~-~g-~~~~~~~~G~llal~aa~~~A~~~v~  224 (350)
                       .+.+                |                          .. .+ +.......|++++++++++||.|.+.
T Consensus        87 ~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~  166 (293)
T PRK10532         87 LFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILS  166 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHH
Confidence             1111                1                          01 01 11122346999999999999999999


Q ss_pred             HHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHH
Q 018761          225 VRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLS  304 (350)
Q Consensus       225 ~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s  304 (350)
                      .|+..+++++... .+..+++++++.++....+..      ...+...|..++++|+++++++|.+|++++++.++++++
T Consensus       167 ~r~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as  239 (293)
T PRK10532        167 GQRAGAEHGPATV-AIGSLIAALIFVPIGALQAGE------ALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFG  239 (293)
T ss_pred             HHHHhccCCchHH-HHHHHHHHHHHHHHHHHccCc------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHH
Confidence            9999888888765 456677777777766544321      124556677778999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          305 SLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       305 ~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      ++.++||+++.+++++++||++++.+++|+++|++|++...+++
T Consensus       240 ~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        240 TLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999998886544

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.93  E-value=2e-23  Score=195.65  Aligned_cols=225  Identities=27%  Similarity=0.416  Sum_probs=177.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHH-----h-
Q 018761          118 WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASC-----F-  191 (350)
Q Consensus       118 ~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~-----~-  191 (350)
                      .+.++...++||++++++|...++++|.+++++|++++.++++++...++++.+ +++++......|.++...     + 
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~   88 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLP-TLRQWLNAALIGLLLLAVGNGMVTV   88 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777889999999999999999999999999999999999988776654433 456666665566543211     1 


Q ss_pred             ---cc-------------c-------------------------------cCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 018761          192 ---QA-------------P-------------------------------AFDESNSSLWGSGEWWMLLAAQSMAVGTVM  224 (350)
Q Consensus       192 ---~~-------------P-------------------------------~~~g~~~~~~~~G~llal~aa~~~A~~~v~  224 (350)
                         ..             |                               ...+.+......|++++++++++||.|.+.
T Consensus        89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~  168 (292)
T PRK11272         89 AEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVW  168 (292)
T ss_pred             HHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHH
Confidence               00             1                               011112223346999999999999999999


Q ss_pred             HHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHH
Q 018761          225 VRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLS  304 (350)
Q Consensus       225 ~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s  304 (350)
                      .|+..++ ++...+.+++.++++.+.+.....+...    ....+...|..+++++++++++++.+|++++++.++++++
T Consensus       169 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s  243 (292)
T PRK11272        169 SSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERL----TALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALAT  243 (292)
T ss_pred             HHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence            9997654 4456677888888888877766543321    1224567899999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          305 SLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       305 ~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      .+.+++|+++++++++++||++++.+++|+++|+.|+++.++++
T Consensus       244 ~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~  287 (292)
T PRK11272        244 SYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK  287 (292)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.92  E-value=8.9e-23  Score=191.57  Aligned_cols=222  Identities=16%  Similarity=0.146  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHHHH-Hhc-
Q 018761          116 LEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLP-SGFNAWVSIFLFALVDAS-CFQ-  192 (350)
Q Consensus       116 ~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~-~~~~~~~~~~~~gl~~~~-~~~-  192 (350)
                      +++++++.++++||++++.+|...+++||..+.++|+.++.++++++..  +++.+ ..++......+....... .+. 
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~a   81 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVG--FPRLRQFPKRYLLAGGLLFVSYEICLALS   81 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHcc--ccccccccHHHHHHHhHHHHHHHHHHHHH
Confidence            4577889999999999999999999999999999999999999887642  11211 112221111110000111 000 


Q ss_pred             ------c-------------c--------------------------------cCCCCC----------CcchhHHHHHH
Q 018761          193 ------A-------------P--------------------------------AFDESN----------SSLWGSGEWWM  211 (350)
Q Consensus       193 ------~-------------P--------------------------------~~~g~~----------~~~~~~G~lla  211 (350)
                            .             |                                ...++.          ......|++++
T Consensus        82 ~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~  161 (295)
T PRK11689         82 LGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLA  161 (295)
T ss_pred             HHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHH
Confidence                  0             1                                011110          01123599999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 018761          212 LLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVY  291 (350)
Q Consensus       212 l~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~  291 (350)
                      +++++|||.|+++.|+..++.++.....   ..+.+.+.+.....+.+     ....+...|..+++.+ ++++++|.+|
T Consensus       162 l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~l~~~~-~~t~~~~~l~  232 (295)
T PRK11689        162 FIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQP-----AMVFSLPAIIKLLLAA-AAMGFGYAAW  232 (295)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCc-----cccCCHHHHHHHHHHH-HHHHHHHHHH
Confidence            9999999999999999987788765422   23333333333333221     1235667888888888 5789999999


Q ss_pred             HHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          292 FYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       292 ~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      ++++|+.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++...++
T Consensus       233 ~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~  289 (295)
T PRK11689        233 NVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT  289 (295)
T ss_pred             HHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence            999999999999999999999999999999999999999999999999998776544

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.91  E-value=4.9e-22  Score=190.51  Aligned_cols=235  Identities=12%  Similarity=0.158  Sum_probs=178.0

Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHhCC--CCCC-ChHHHHHHHHHHHHHH
Q 018761          113 GMLLEWAVLVSPFFFWGTAMVAMKEVLP-KAGTFFVAAFRLIPAGLLLITFASSQGR--KLPS-GFNAWVSIFLFALVDA  188 (350)
Q Consensus       113 ~~~~g~llll~a~~~w~~~~v~~K~~~~-~~~p~~i~~~R~~~a~l~l~~~~~~~~~--~~~~-~~~~~~~~~~~gl~~~  188 (350)
                      +..+.++.|+..-+..+...++.|.+++ +++|..+.++|+.+++++++++++.+++  +.++ .++++..+.+.|+++.
T Consensus        10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~   89 (358)
T PLN00411         10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS   89 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence            3456788899999999999999999998 7999999999999999999998876543  2222 3566677777777662


Q ss_pred             HHhcc--------------------c---------------------------------------cC-CCC---------
Q 018761          189 SCFQA--------------------P---------------------------------------AF-DES---------  199 (350)
Q Consensus       189 ~~~~~--------------------P---------------------------------------~~-~g~---------  199 (350)
                      .++..                    |                                       .. .+.         
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~  169 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP  169 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence            11111                    1                                       00 010         


Q ss_pred             -------------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhccCChH-HHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 018761          200 -------------NSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPV-MATGWHMVIGGLPLMVISVLNHDPVYGESV  265 (350)
Q Consensus       200 -------------~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  265 (350)
                                   +...+..|++++++++++||+|+++.|+..+++++. ..++++++.+.+.+.+.....+........
T Consensus       170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~  249 (358)
T PLN00411        170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI  249 (358)
T ss_pred             cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccce
Confidence                         011234599999999999999999999987777664 567778888887777766654332111111


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761          266 KELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  345 (350)
Q Consensus       266 ~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~  345 (350)
                      ...+.. ...++|.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|+++|++|+++..
T Consensus       250 ~~~~~~-~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~  327 (358)
T PLN00411        250 IHFDIT-LITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM  327 (358)
T ss_pred             eccchH-HHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            223333 3457777765 56899999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccCC
Q 018761          346 FRGS  349 (350)
Q Consensus       346 ~~~~  349 (350)
                      +.++
T Consensus       328 ~~~~  331 (358)
T PLN00411        328 WGKA  331 (358)
T ss_pred             hhhh
Confidence            7654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.91  E-value=1.6e-21  Score=183.42  Aligned_cols=227  Identities=20%  Similarity=0.308  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHH-HHHHHH-HHhc---
Q 018761          118 WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFL-FALVDA-SCFQ---  192 (350)
Q Consensus       118 ~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~-~gl~~~-~~~~---  192 (350)
                      .++.++++++||++++++|...+++||..+.++|+.+++++++++..  +++.+  ++....... ...... ..+.   
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~--~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~   81 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVA--RPKVP--LNLLLGYGLTISFGQFAFLFCAIN   81 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc--CCCCc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678889999999999999999999999999999998877766542  22221  222211111 100010 1010   


Q ss_pred             --c------------c--------------------------------cCCC--CCCcchhHHHHHHHHHHHHHHHHHHH
Q 018761          193 --A------------P--------------------------------AFDE--SNSSLWGSGEWWMLLAAQSMAVGTVM  224 (350)
Q Consensus       193 --~------------P--------------------------------~~~g--~~~~~~~~G~llal~aa~~~A~~~v~  224 (350)
                        .            |                                ...+  .+......|++++++++++|++|.++
T Consensus        82 ~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~  161 (299)
T PRK11453         82 FGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIF  161 (299)
T ss_pred             hcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence              0            1                                0111  11122336999999999999999999


Q ss_pred             HHHhhccCCh---HHHHHHHHHHHHHHHHHHHHhhcCCCc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Q 018761          225 VRWVSKYSDP---VMATGWHMVIGGLPLMVISVLNHDPVY-GESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSL  300 (350)
Q Consensus       225 ~r~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a  300 (350)
                      .|+..++.+.   .....+..+.+.+.........+.+.. ...+...+...|..++|+++++++++|.+|++++++.++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a  241 (299)
T PRK11453        162 NKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYET  241 (299)
T ss_pred             HHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            9997654432   333455555555555444443332210 011234567889999999999999999999999999999


Q ss_pred             hHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          301 TKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       301 ~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      ++++.+.+++|+++.+++++++||+++..+++|+++|++|+++..+.+
T Consensus       242 ~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        242 WRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            999999999999999999999999999999999999999999876544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.87  E-value=6.6e-20  Score=168.48  Aligned_cols=203  Identities=29%  Similarity=0.436  Sum_probs=159.8

Q ss_pred             HhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHh-----cc--------
Q 018761          128 WGTAMVAMKEVLP-KAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCF-----QA--------  193 (350)
Q Consensus       128 w~~~~v~~K~~~~-~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~-----~~--------  193 (350)
                      ||++++..|..++ +.|+.++.+.|++.+.+++.++...+     ++++++...+..|.++...+     .+        
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~   75 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGE   75 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence            8999999999887 68999999999999999888876543     23445555555544432221     11        


Q ss_pred             --------c--------------------------------cCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 018761          194 --------P--------------------------------AFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSD  233 (350)
Q Consensus       194 --------P--------------------------------~~~g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~  233 (350)
                              |                                ...+++......|++++++++++|+.+.+..|+..++.+
T Consensus        76 ~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~  155 (260)
T TIGR00950        76 AALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEG  155 (260)
T ss_pred             hHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence                    1                                011122234457999999999999999999999887777


Q ss_pred             hH--HHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHH
Q 018761          234 PV--MATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTP  311 (350)
Q Consensus       234 ~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~P  311 (350)
                      +.  ....+++.++.+.+.+.....++.      ...+..+|..++++++++++++|.+|++++++.++++++.+.+++|
T Consensus       156 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~p  229 (260)
T TIGR00950       156 PELLQFTGWVLLLGALLLLPFAWFLGPN------PQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEP  229 (260)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCCC------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            43  455567888888888887665432      1235677888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 018761          312 MFASIFGFLYLGETFSPLQLVGAAVTVVAI  341 (350)
Q Consensus       312 v~a~i~~~l~lgE~~~~~~~vG~~lIl~gv  341 (350)
                      +++++++++++||++++.+++|+++++.|+
T Consensus       230 v~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       230 LVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999986

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.85  E-value=5.7e-19  Score=165.88  Aligned_cols=222  Identities=15%  Similarity=0.123  Sum_probs=145.7

Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CChHHHHHHHHHHHHH
Q 018761          113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLP-----SGFNAWVSIFLFALVD  187 (350)
Q Consensus       113 ~~~~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~-----~~~~~~~~~~~~gl~~  187 (350)
                      ++.+|.+++++++++||.+++..|.. +++||.++.++|++++.+++++++..+++...     ..++.+......++..
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLI   83 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            44678999999999999999999985 67999999999999999988877655432111     1223322222222111


Q ss_pred             ----HHHhcc----------------cc-------------------------------CCCCCCcchhHHHHHHHHHHH
Q 018761          188 ----ASCFQA----------------PA-------------------------------FDESNSSLWGSGEWWMLLAAQ  216 (350)
Q Consensus       188 ----~~~~~~----------------P~-------------------------------~~g~~~~~~~~G~llal~aa~  216 (350)
                          ...+.+                |.                               ......+    ..++++++++
T Consensus        84 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~----~~~~~l~aa~  159 (296)
T PRK15430         84 GGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGS----LPIIALGLAF  159 (296)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCC----ccHHHHHHHH
Confidence                111111                20                               0000111    1246889999


Q ss_pred             HHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018761          217 SMAVGTVMVRWVSKYSD--PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYS  294 (350)
Q Consensus       217 ~~A~~~v~~r~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~a  294 (350)
                      +||.|.+..|+..++..  ....+.+.+.++.+...+..   ..+.  ..........+..+++.+ +.+.++|.+|+++
T Consensus       160 ~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~g-~~t~i~~~~~~~a  233 (296)
T PRK15430        160 SFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSST--SHMGQNPMSLNLLLIAAG-IVTTVPLLCFTAA  233 (296)
T ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCc--ccccCCcHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            99999999999754322  22333444444443322211   1110  001111122233344445 4678899999999


Q ss_pred             hccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761          295 ATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  345 (350)
Q Consensus       295 l~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~  345 (350)
                      +++.++++++++.+++|+++.+++|+++||+|++.+++|+++|++|+.+..
T Consensus       234 ~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        234 ATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV  284 (296)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988876654

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.82  E-value=7.5e-18  Score=148.60  Aligned_cols=220  Identities=20%  Similarity=0.230  Sum_probs=180.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH----HHHHhc
Q 018761          117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALV----DASCFQ  192 (350)
Q Consensus       117 g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~----~~~~~~  192 (350)
                      +++.++.+++.--....+.|.+.+.+++.-++.+|..++.++++++++..+++.  .++++..+..+|..    +..+|.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~--~~~~~~~~~~yGvsLg~MNl~FY~   90 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRL--SKPQRLALLAYGVSLGGMNLLFYL   90 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhcc--ChhhhHHHHHHHHHHHHHHHHHHH
Confidence            677788888888888889999999999999999999999999999987665444  34566666655543    444444


Q ss_pred             c----------------c---------------------------cCCC-CCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018761          193 A----------------P---------------------------AFDE-SNSSLWGSGEWWMLLAAQSMAVGTVMVRWV  228 (350)
Q Consensus       193 ~----------------P---------------------------~~~g-~~~~~~~~G~llal~aa~~~A~~~v~~r~~  228 (350)
                      .                |                           ...+ ........|..++++++.||+.|.+..||.
T Consensus        91 si~riPlGiAVAiEF~GPL~vA~~~sRr~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~  170 (292)
T COG5006          91 SIERIPLGIAVAIEFTGPLAVALLSSRRLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRA  170 (292)
T ss_pred             HHHhccchhhhhhhhccHHHHHHHhccchhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchh
Confidence            3                1                           0111 223445679999999999999999999999


Q ss_pred             hccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHh
Q 018761          229 SKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTF  308 (350)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~  308 (350)
                      .+..|...-+...+.+++++.+|+......+.      -.++.-...-+..+++++++.|.+...++++.+....+.+..
T Consensus       171 g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~------l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlS  244 (292)
T COG5006         171 GRAEHGTAGVAVGMLVAALIVLPIGAAQAGPA------LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLS  244 (292)
T ss_pred             cccCCCchHHHHHHHHHHHHHhhhhhhhcchh------hcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHH
Confidence            87788889999999999999999987665542      234555566677899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 018761          309 LTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV  344 (350)
Q Consensus       309 l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~  344 (350)
                      +||.++++.|++++||+++..||+|.++|+++..-.
T Consensus       245 LePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~  280 (292)
T COG5006         245 LEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS  280 (292)
T ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999877633

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.80  E-value=5.3e-17  Score=155.89  Aligned_cols=218  Identities=13%  Similarity=0.102  Sum_probs=159.3

Q ss_pred             hHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHHHHHhcc------------
Q 018761          130 TAMVAMKEVLPKAG-TFFVAAFRLIPAGLLLITFASSQGRKLPS---GFNAWVSIFLFALVDASCFQA------------  193 (350)
Q Consensus       130 ~~~v~~K~~~~~~~-p~~i~~~R~~~a~l~l~~~~~~~~~~~~~---~~~~~~~~~~~gl~~~~~~~~------------  193 (350)
                      ......|.+++.+| |..++.+|++++.+++..++..+.++.++   .++.+..++..|+++...+..            
T Consensus        63 ~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~  142 (350)
T PTZ00343         63 LYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSF  142 (350)
T ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            34556899999999 99999999999988776665433232221   345667777888776543221            


Q ss_pred             --------c-------------------------c------CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc---
Q 018761          194 --------P-------------------------A------FDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKY---  231 (350)
Q Consensus       194 --------P-------------------------~------~~g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~---  231 (350)
                              |                         .      ....+.+....|++++++++++++++.+..|+..++   
T Consensus       143 ~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~  222 (350)
T PTZ00343        143 THVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSE  222 (350)
T ss_pred             HHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence                    1                         0      111233344569999999999999999999997654   


Q ss_pred             ----CChHHHHHHHHHHHHHHHHHHHHhhcCCCccccc----ccCCHHHHHHHHHHHHHHHHHHHHHHHH----HhccCC
Q 018761          232 ----SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESV----KELTSSDILALLYTSIFGSAISYGVYFY----SATKGS  299 (350)
Q Consensus       232 ----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ll~~gv~~t~l~~~l~~~----al~~~~  299 (350)
                          .++.....+..+.+++.++|+....+.......+    ...+...+..+++. ++.+++++++|+.    ++++++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s  301 (350)
T PTZ00343        223 IGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK-IFFSGVWYYLYNEVAFYCLGKVN  301 (350)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhccc
Confidence                4566677777899999999987755432110001    01111122334443 5667889999995    999999


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          300 LTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       300 a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      +.+.++..+++|+++++++++++||++++.+++|++++++|++++++-|
T Consensus       302 ~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        302 QVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             hhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999987643

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.78  E-value=5.9e-17  Score=152.54  Aligned_cols=216  Identities=13%  Similarity=0.124  Sum_probs=156.0

Q ss_pred             HHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCChHHHHHHHHHHHHHHHHhcc-----------------
Q 018761          133 VAMKEVLPK-AGTFFVAAFRLIPAGLLLITFASSQ-GRKLPSGFNAWVSIFLFALVDASCFQA-----------------  193 (350)
Q Consensus       133 v~~K~~~~~-~~p~~i~~~R~~~a~l~l~~~~~~~-~~~~~~~~~~~~~~~~~gl~~~~~~~~-----------------  193 (350)
                      +..|+++++ -+|..++++|+.++.+++.+.+... +++.+.+++++..++..|+++...+..                 
T Consensus        19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~   98 (302)
T TIGR00817        19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIK   98 (302)
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            578999997 6699999999999988776663322 233334577888888888876433211                 


Q ss_pred             ---c-------------------------------cCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--cCChHHH
Q 018761          194 ---P-------------------------------AFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMA  237 (350)
Q Consensus       194 ---P-------------------------------~~~g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~--~~~~~~~  237 (350)
                         |                               .....+.+....|++++++++++|+++.+..|+..+  ++|+...
T Consensus        99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~  178 (302)
T TIGR00817        99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNL  178 (302)
T ss_pred             hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccH
Confidence               1                               011122233346999999999999999999999877  7899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCccc-cccc----CCHH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHH
Q 018761          238 TGWHMVIGGLPLMVISVLNHDPVYGE-SVKE----LTSS-DILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTP  311 (350)
Q Consensus       238 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~----~~~~-~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~P  311 (350)
                      +.+++..+++.+.|+....++..... .+..    .... .+...+..+..+....+.++++++++.+|++++++.+++|
T Consensus       179 ~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~p  258 (302)
T TIGR00817       179 YAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKR  258 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhh
Confidence            99999999999999887655421100 0000    0111 1111222232233333346668999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          312 MFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       312 v~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      +++++++++++||+++..+++|++++++|+++.++.|
T Consensus       259 v~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k  295 (302)
T TIGR00817       259 VVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK  295 (302)
T ss_pred             hheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998755

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.77  E-value=4e-17  Score=152.22  Aligned_cols=219  Identities=15%  Similarity=0.179  Sum_probs=147.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHh--CCCCCC-ChHHHHHHHHHHHHHHHHhcc-
Q 018761          118 WAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQ--GRKLPS-GFNAWVSIFLFALVDASCFQA-  193 (350)
Q Consensus       118 ~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~--~~~~~~-~~~~~~~~~~~gl~~~~~~~~-  193 (350)
                      .++.++++++|+..++..|...++.++.  .++++..+.+++.|+...+  ++..+. +++.+..+...++.+...+.. 
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL   80 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999666654553  4777788888888877664  222232 233333334444332222111 


Q ss_pred             -------------------c--------------------------------cCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 018761          194 -------------------P--------------------------------AFDESNSSLWGSGEWWMLLAAQSMAVGT  222 (350)
Q Consensus       194 -------------------P--------------------------------~~~g~~~~~~~~G~llal~aa~~~A~~~  222 (350)
                                         |                                ....+.......|+.++++++++|++|.
T Consensus        81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~  160 (281)
T TIGR03340        81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS  160 (281)
T ss_pred             HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence                               1                                0001111222358889999999999999


Q ss_pred             HHHHHhhccCChHH----HHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 018761          223 VMVRWVSKYSDPVM----ATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKG  298 (350)
Q Consensus       223 v~~r~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~  298 (350)
                      +..|+..++.++..    ...+..+..++.+.+.....+...     .......+..+++.+.++++++|.+|++++++.
T Consensus       161 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~  235 (281)
T TIGR03340       161 LSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS-----MFPYARQILPSATLGGLMIGGAYALVLWAMTRL  235 (281)
T ss_pred             hhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99998655444422    222333333222222222222210     112233556677888899999999999999999


Q ss_pred             ChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 018761          299 SLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYL  343 (350)
Q Consensus       299 ~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l  343 (350)
                      ++++++.+.+++|+++.+++++++||+++..+++|+++|++|+++
T Consensus       236 ~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       236 PVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             CceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            999999999999999999999999999999999999999999876

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.73  E-value=5.4e-15  Score=137.06  Aligned_cols=228  Identities=26%  Similarity=0.363  Sum_probs=160.5

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHHHHHH---H
Q 018761          114 MLLEWAVLVSPFFFWGTAMVAMKEVLPK-AGTFFVAAFRLIPAGLLLITFASSQGR-KLPSGFNAWVSIFLFALVD---A  188 (350)
Q Consensus       114 ~~~g~llll~a~~~w~~~~v~~K~~~~~-~~p~~i~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~~~~gl~~---~  188 (350)
                      ...+....+...+.|+.+....|...++ .++....+.|+..+.+++.+....++. +.+..+..+...+..++..   .
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF   84 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence            3456777888889999999999998886 778888888999999885555443321 2222211112222211111   1


Q ss_pred             HHhcc-----------------c---------------------------------cCCCCCCcc--hhHHHHHHHHHHH
Q 018761          189 SCFQA-----------------P---------------------------------AFDESNSSL--WGSGEWWMLLAAQ  216 (350)
Q Consensus       189 ~~~~~-----------------P---------------------------------~~~g~~~~~--~~~G~llal~aa~  216 (350)
                      .++..                 |                                 ...++....  ...|+++++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~  164 (292)
T COG0697          85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL  164 (292)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence            11111                 1                                 011111111  3579999999999


Q ss_pred             HHHHHHHHHHHhhccCChHHHHH-HHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018761          217 SMAVGTVMVRWVSKYSDPVMATG-WHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSA  295 (350)
Q Consensus       217 ~~A~~~v~~r~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al  295 (350)
                      ++|++.+..|+.. +.++..... ++.........+...  ...    . ...+...|..+.+.|+++++++|.++++++
T Consensus       165 ~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~  236 (292)
T COG0697         165 LWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFL--SGF----G-APILSRAWLLLLYLGVFSTGLAYLLWYYAL  236 (292)
T ss_pred             HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHh--ccc----c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999987 667766666 444422222222221  111    0 234567889999999999989999999999


Q ss_pred             ccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 018761          296 TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  349 (350)
Q Consensus       296 ~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~~  349 (350)
                      ++.+++.++++.+++|+++++++++++||+++..+++|+.+++.|+.+..++++
T Consensus       237 ~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~~~  290 (292)
T COG0697         237 RLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRAR  290 (292)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999999987653

>TIGR00688 rarD rarD protein

Probab=99.67  E-value=1.9e-14  Score=132.32  Aligned_cols=195  Identities=14%  Similarity=0.043  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC------CC-CChHH-HHHHHHHHHHH
Q 018761          116 LEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRK------LP-SGFNA-WVSIFLFALVD  187 (350)
Q Consensus       116 ~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~------~~-~~~~~-~~~~~~~gl~~  187 (350)
                      +|++++++++++||+++++.|. .+++||.++.++|++++.++++++...++++      .+ ..+++ +..+...|++.
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   80 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI   80 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            4788999999999999999998 4679999999999999998887766443321      11 11222 33344444332


Q ss_pred             H----HHhcc----------------c-------------------------c------CCCCCCcchhHHHHHHHHHHH
Q 018761          188 A----SCFQA----------------P-------------------------A------FDESNSSLWGSGEWWMLLAAQ  216 (350)
Q Consensus       188 ~----~~~~~----------------P-------------------------~------~~g~~~~~~~~G~llal~aa~  216 (350)
                      .    .++.+                |                         .      ......+.    .++++++++
T Consensus        81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~----~~~~l~aa~  156 (256)
T TIGR00688        81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSL----PWEALVLAF  156 (256)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHH
Confidence            2    11111                2                         0      00001111    146889999


Q ss_pred             HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018761          217 SMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSAT  296 (350)
Q Consensus       217 ~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~  296 (350)
                      +||.|.+..|+..++ +....... .+.......+.....+.+.   ........+|..+++.|++ +.++|.+++++++
T Consensus       157 ~~a~~~i~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~  230 (256)
T TIGR00688       157 SFTAYGLIRKALKNT-DLAGFCLE-TLSLMPVAIYYLLQTDFAT---VQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAAN  230 (256)
T ss_pred             HHHHHHHHHhhcCCC-CcchHHHH-HHHHHHHHHHHHHHhccCc---ccccCchhHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            999999999998543 33222211 1111111111111111110   0011122478888888866 8899999999999


Q ss_pred             cCChhHHHHHHhhHHHHHHHHHHHH
Q 018761          297 KGSLTKLSSLTFLTPMFASIFGFLY  321 (350)
Q Consensus       297 ~~~a~~~s~l~~l~Pv~a~i~~~l~  321 (350)
                      +.++++++++.|++|++++++++++
T Consensus       231 ~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       231 RLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999864

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.67  E-value=5.8e-16  Score=123.04  Aligned_cols=137  Identities=20%  Similarity=0.319  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761          207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI  286 (350)
Q Consensus       207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l  286 (350)
                      ..++++++|+++++..++.|--.+++||...+..+.++..+++..+....++.+.   ....+...|..+...| +.+++
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~---~~~~~~k~~lflilSG-la~gl   79 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQA---GGEIGPKSWLFLILSG-LAGGL   79 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceec---ccccCcceehhhhHHH-HHHHH
Confidence            4689999999999999999998899999999999999999999999888876532   2235778888888777 77899


Q ss_pred             HHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761          287 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR  347 (350)
Q Consensus       287 ~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~  347 (350)
                      +..+|++|++..+++++.++.-+.|+++++++++++||+++..+++|.++|++|.+++.++
T Consensus        80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~~  140 (140)
T COG2510          80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSLR  140 (140)
T ss_pred             HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEecC
Confidence            9999999999999999999999999999999999999999999999999999999887653

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.66  E-value=5.2e-18  Score=150.51  Aligned_cols=228  Identities=14%  Similarity=0.148  Sum_probs=170.1

Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHhc
Q 018761          113 GMLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQ  192 (350)
Q Consensus       113 ~~~~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~  192 (350)
                      ++.+|.+++..+ .++..+.++.+.+ .+.+|.+..-.|+++-.++..|..+.++.....+..++.++++.|+.|.++.+
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~-~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm  112 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKV-LENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM  112 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhh-hccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence            556778777777 6666666665553 37899999999999998888888776654431111222222333333322211


Q ss_pred             c--------------------------------------------------------c-cCCC-----CC---CcchhHH
Q 018761          193 A--------------------------------------------------------P-AFDE-----SN---SSLWGSG  207 (350)
Q Consensus       193 ~--------------------------------------------------------P-~~~g-----~~---~~~~~~G  207 (350)
                      .                                                        | ...|     .+   .+...+|
T Consensus       113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~g  192 (346)
T KOG4510|consen  113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPG  192 (346)
T ss_pred             HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCc
Confidence            1                                                        1 1111     11   1223458


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHH
Q 018761          208 EWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAIS  287 (350)
Q Consensus       208 ~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~  287 (350)
                      ...++.++++.|.-+++.|++.|+.|....+.+..+++.+..+......+..    .+++ ...+|+.++.+|+++ .++
T Consensus       193 t~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~----~lP~-cgkdr~l~~~lGvfg-fig  266 (346)
T KOG4510|consen  193 TVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAV----QLPH-CGKDRWLFVNLGVFG-FIG  266 (346)
T ss_pred             hHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccce----ecCc-cccceEEEEEehhhh-hHH
Confidence            9999999999999999999999999999999999999999888876655443    2333 456788888889776 569


Q ss_pred             HHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          288 YGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       288 ~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      |.+.++++|+..|..++++.+++.+++.+|..++|||+|++++|+|+++|+.+.+.+.++|
T Consensus       267 QIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k  327 (346)
T KOG4510|consen  267 QILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK  327 (346)
T ss_pred             HHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988776554

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.60  E-value=4.1e-13  Score=125.76  Aligned_cols=216  Identities=16%  Similarity=0.175  Sum_probs=150.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH----HHHhc
Q 018761          117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVD----ASCFQ  192 (350)
Q Consensus       117 g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~----~~~~~  192 (350)
                      ++++.++++++||++.+..|... +.++.++.  |..++.+++..+....+++....++.+...++.|+.-    ...+.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~   78 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFK   78 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHH
Confidence            46788999999999999999865 78887775  7888888777665544432222233333333333322    11111


Q ss_pred             c--------------------------------c-----------------------cCCCCCC-----cchhHHHHHHH
Q 018761          193 A--------------------------------P-----------------------AFDESNS-----SLWGSGEWWML  212 (350)
Q Consensus       193 ~--------------------------------P-----------------------~~~g~~~-----~~~~~G~llal  212 (350)
                      +                                +                       ..++++.     .....|.++++
T Consensus        79 ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l  158 (290)
T TIGR00776        79 SMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLL  158 (290)
T ss_pred             HHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHH
Confidence            1                                0                       0011111     22357999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCChHHHHHHHHH---HHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHH
Q 018761          213 LAAQSMAVGTVMVRWVSKYSDPVMATGWHMV---IGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYG  289 (350)
Q Consensus       213 ~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~  289 (350)
                      +++++|+.|.+..|+.  ++|+...+..+..   +++++...... ...        +...+.+...+..|++ +++++.
T Consensus       159 ~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~Gi~-~~ia~~  226 (290)
T TIGR00776       159 MSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHI-LAK--------PLKKYAILLNILPGLM-WGIGNF  226 (290)
T ss_pred             HHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHh-ccc--------chHHHHHHHHHHHHHH-HHHHHH
Confidence            9999999999999986  4788877544444   33333332221 011        1123333334447877 799999


Q ss_pred             HHHHHhc-cCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHHHhhcc
Q 018761          290 VYFYSAT-KGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQL----VGAAVTVVAIYLVNFR  347 (350)
Q Consensus       290 l~~~al~-~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~----vG~~lIl~gv~l~~~~  347 (350)
                      +|..+.+ +.+++.++++.++||+.+.++++++++|..++.++    +|.++|++|+.+....
T Consensus       227 ~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       227 FYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             HHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence            9999999 99999999999999999999999999999999999    9999999999987654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.57  E-value=2.3e-14  Score=116.21  Aligned_cols=125  Identities=30%  Similarity=0.560  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018761          216 QSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSA  295 (350)
Q Consensus       216 ~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al  295 (350)
                      ++||.+.+..|+..++.|+...+.++.+.+.+ +.+.....+...    ....+..++...++.+++++++++.++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   75 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLYFYAL   75 (126)
T ss_pred             ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhcccc----ccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence            47899999999998999999999999999998 666666554431    3456777888889899888899999999999


Q ss_pred             ccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761          296 TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  345 (350)
Q Consensus       296 ~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~  345 (350)
                      ++.+++.++++.+++|+++.++++++++|++++.+++|.+++++|++++.
T Consensus        76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.50  E-value=2.8e-11  Score=109.85  Aligned_cols=226  Identities=17%  Similarity=0.168  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCChHHHHHHHHHHHHHHH
Q 018761          115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKL-----PSGFNAWVSIFLFALVDAS  189 (350)
Q Consensus       115 ~~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~gl~~~~  189 (350)
                      .+|+++.+.+-++||......|. ++.+|+.++...|.+.+..+++......|+..     .+.++.+..+.+.++....
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~   84 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKL-LEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGL   84 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            46899999999999999999997 68999999999999999998887765544322     2233455555555544322


Q ss_pred             Hhcc--------------------cc-------------------------CCCCCCcchhHH--HHHHHHHHHHHHHHH
Q 018761          190 CFQA--------------------PA-------------------------FDESNSSLWGSG--EWWMLLAAQSMAVGT  222 (350)
Q Consensus       190 ~~~~--------------------P~-------------------------~~g~~~~~~~~G--~llal~aa~~~A~~~  222 (350)
                      -...                    |.                         ..|.....+..|  -+.++.-+++|+.|.
T Consensus        85 nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la~sf~~Yg  164 (293)
T COG2962          85 NWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALALSFGLYG  164 (293)
T ss_pred             HHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            1110                    20                         000000001111  146778889999999


Q ss_pred             HHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhH
Q 018761          223 VMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTK  302 (350)
Q Consensus       223 v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~  302 (350)
                      .+-|++  ++|+.+-....++.-..+.+.+....++...  .....+...+..+...| ..|++...+|..+.++++-+.
T Consensus       165 l~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~--~~~~~~~~~~~LLv~aG-~vTavpL~lf~~aa~~lpls~  239 (293)
T COG2962         165 LLRKKL--KVDALTGLTLETLLLLPVALIYLLFLADSGQ--FLQQNANSLWLLLVLAG-LVTAVPLLLFAAAAKRLPLST  239 (293)
T ss_pred             HHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhcCch--hhhcCCchHHHHHHHhh-HHHHHHHHHHHHHHhcCCHHH
Confidence            987776  6888888888888888888877776655421  01213445666666667 557889999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761          303 LSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  346 (350)
Q Consensus       303 ~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~  346 (350)
                      .+.++|.+|..-.+++.+++||+++..+++.-++|-.|+++...
T Consensus       240 ~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~  283 (293)
T COG2962         240 LGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI  283 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888763

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.41  E-value=1.1e-10  Score=110.40  Aligned_cols=231  Identities=17%  Similarity=0.099  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhc-CCC-HHHHHHHHHHHHHHHHHHHHHHhCCC---CCCChHHHHHHHHHHHHHHH
Q 018761          115 LLEWAVLVSPFFFWGTAMVAMKEVLP-KAG-TFFVAAFRLIPAGLLLITFASSQGRK---LPSGFNAWVSIFLFALVDAS  189 (350)
Q Consensus       115 ~~g~llll~a~~~w~~~~v~~K~~~~-~~~-p~~i~~~R~~~a~l~l~~~~~~~~~~---~~~~~~~~~~~~~~gl~~~~  189 (350)
                      ++..++-=.-+++-..+.+....+.+ +.+ |..-.++-++.-.++..+....|+.+   ....+++|+..++.+++...
T Consensus        12 ~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~   91 (334)
T PF06027_consen   12 WIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVE   91 (334)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHH
Confidence            34444444445566666666665554 333 44455666665555666665555322   12234667777777877554


Q ss_pred             Hhcc---------------------c-----------------------------------c-CC---CCCCcchhHHHH
Q 018761          190 CFQA---------------------P-----------------------------------A-FD---ESNSSLWGSGEW  209 (350)
Q Consensus       190 ~~~~---------------------P-----------------------------------~-~~---g~~~~~~~~G~l  209 (350)
                      ..+.                     |                                   + ..   +.+.+....||+
T Consensus        92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDl  171 (334)
T PF06027_consen   92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDL  171 (334)
T ss_pred             HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHH
Confidence            3221                     1                                   1 11   112345567999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHH
Q 018761          210 WMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYG  289 (350)
Q Consensus       210 lal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~  289 (350)
                      ++++++++||+++++.++..++.|.....++..+++.++..+.....+.....  ..+++.+.+..++.- .++..+-|.
T Consensus       172 l~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~--~~~w~~~~~~~~v~~-~~~lf~~y~  248 (334)
T PF06027_consen  172 LALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIE--SIHWTSQVIGLLVGY-ALCLFLFYS  248 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhh--ccCCChhhHHHHHHH-HHHHHHHHH
Confidence            99999999999999999998999999999999999999998888777655332  123444444433332 245566777


Q ss_pred             HHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          290 VYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       290 l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      +....++..+|+...+-..+..+++++++++++|+.+++..++|.++|++|.++....+
T Consensus       249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             HHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence            88889999999999999999999999999999999999999999999999999987643

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.25  E-value=3.1e-10  Score=105.80  Aligned_cols=134  Identities=17%  Similarity=0.214  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHH
Q 018761          208 EWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAIS  287 (350)
Q Consensus       208 ~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~  287 (350)
                      .++.+++++++|...+..|+..++.++.  ..+....+.+.+.++........   .+...+...|. .+..+.++....
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~   76 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQV---GWSRLPATFWL-LLAISAVANMVY   76 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccC---CCCCcchhhHH-HHHHHHHHHHHH
Confidence            4688999999999999999876665553  35555566666666655431110   12333333343 444455667789


Q ss_pred             HHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761          288 YGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR  347 (350)
Q Consensus       288 ~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~  347 (350)
                      +.++++++++.+++.++++.++.|+++.+++++++||+++..+++|.+++++|++++..+
T Consensus        77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999887643

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.24  E-value=4.9e-10  Score=105.31  Aligned_cols=139  Identities=14%  Similarity=0.203  Sum_probs=112.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCccccccc-CCHHHHHHHHHHHH
Q 018761          203 LWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKE-LTSSDILALLYTSI  281 (350)
Q Consensus       203 ~~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~gv  281 (350)
                      ....|.++.++++++|+...+..|.. .++++.....++.+++.+++.++.....+...  .... -+...+.. ...+.
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~   80 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSY--LKTLIQTPQKIFM-LAVSA   80 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHH--HHHHHcCHHHHHH-HHHHH
Confidence            34469999999999999999999876 67999999999999999877776654422100  0000 12333333 33566


Q ss_pred             HHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761          282 FGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  345 (350)
Q Consensus       282 ~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~  345 (350)
                      ++.++.+.++++++++.+++.++++.++.|++++++++++++|+++..+++|.++.++|+.++.
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            7778889999999999999999999999999999999999999999999999999999998875

>TIGR00688 rarD rarD protein

Probab=99.22  E-value=4.3e-10  Score=103.35  Aligned_cols=138  Identities=17%  Similarity=0.210  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccccCCHHH-HHHHHHHHHHHH
Q 018761          207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYG-ESVKELTSSD-ILALLYTSIFGS  284 (350)
Q Consensus       207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~ll~~gv~~t  284 (350)
                      |.++.++++++|+...+..|.. .+.++.++..++.+++.+.+.++.....+.... ......+... +..+...|++ .
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~   80 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL-I   80 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH-H
Confidence            7889999999999999999985 569999999999999998877766544321000 0011112222 3334445544 6


Q ss_pred             HHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761          285 AISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  346 (350)
Q Consensus       285 ~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~  346 (350)
                      .+.+.++++++++.+++.++.+.++.|+++++++++++||+++..+++|..+.++|+.++..
T Consensus        81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            77899999999999999999999999999999999999999999999999999999887643

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.16  E-value=9.6e-09  Score=96.87  Aligned_cols=223  Identities=17%  Similarity=0.135  Sum_probs=153.1

Q ss_pred             HHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHH--HHHHHHHHHHhccc--cCCCC
Q 018761          124 PFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSI--FLFALVDASCFQAP--AFDES  199 (350)
Q Consensus       124 a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~--~~~gl~~~~~~~~P--~~~g~  199 (350)
                      .++++..+..+...++..+|.-.....|..-....++.-....+|+.+  ++++...  +..|+.........  .....
T Consensus        70 ~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~--~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~  147 (303)
T PF08449_consen   70 LSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYS--RRQYLSVLLITIGVAIFTLSDSSSSSSSNS  147 (303)
T ss_pred             HHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCcccc--HHHHHHHHHHHhhHheeeeccccccccccc
Confidence            346666666777777888887777778887655555444344444443  3444332  23333222211111  01111


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHh--hcCCCcccccccCCHHHHHH
Q 018761          200 NSSLWGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMATGWHMVIGGLPLMVISVL--NHDPVYGESVKELTSSDILA  275 (350)
Q Consensus       200 ~~~~~~~G~llal~aa~~~A~~~v~~r~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  275 (350)
                      ....+..|+.+.+++.++.|...+..+++.+  +.++...+.+....+.+...+....  .++...........+..+..
T Consensus       148 ~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~  227 (303)
T PF08449_consen  148 SSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLY  227 (303)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHH
Confidence            1122234999999999999999999998755  4566888899999999988887776  33321111111223344555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 018761          276 LLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  349 (350)
Q Consensus       276 ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~~  349 (350)
                      ++... ++..+++.+.++..++.++...+++..+.-+++++++++++|+++++.+|+|.++++.|+.+....|+
T Consensus       228 l~~~s-~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~  300 (303)
T PF08449_consen  228 LLLFS-LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKK  300 (303)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhc
Confidence            55555 55677888999999999999999999999999999999999999999999999999999999887654

; GO: 0055085 transmembrane transport

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.08  E-value=2.7e-09  Score=99.69  Aligned_cols=223  Identities=15%  Similarity=0.074  Sum_probs=151.3

Q ss_pred             HHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHH--HHHHHHHHHhccc---
Q 018761          120 VLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIF--LFALVDASCFQAP---  194 (350)
Q Consensus       120 lll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~--~~gl~~~~~~~~P---  194 (350)
                      +.+.-+.+|=........+++..+..........-+...+..-......+.     .+..++  ...+.|......-   
T Consensus       161 ~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~f-----t~sKllav~~si~GViiVt~~~s~  235 (416)
T KOG2765|consen  161 LSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERF-----TLSKLLAVFVSIAGVIIVTMGDSK  235 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchh-----hHHHHHHHHHhhccEEEEEecccc
Confidence            345556788888888777776655555555554444333333222222222     222222  1222221111100   


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc----CChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCH
Q 018761          195 AFDESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKY----SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTS  270 (350)
Q Consensus       195 ~~~g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  270 (350)
                      ..+....+....|+++++++|+.||+|.++.|+-..+    +|.....++..++..++++|...+.+... .+...-++.
T Consensus       236 ~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~-~e~F~lP~~  314 (416)
T KOG2765|consen  236 QNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFG-EERFELPSS  314 (416)
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhc-cCcccCCCC
Confidence            0111123445679999999999999999999985443    45666667777777788887655432221 112344555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          271 SDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       271 ~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      .+...++..++++++++=++|.+|+-..++..+.+-..++...+++...++-|..+++.+++|++.|++|-++++..+
T Consensus       315 ~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  315 TQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             ceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence            566677778899999999999999999999999999999999999999999999999999999999999999988754

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.05  E-value=7.7e-09  Score=87.19  Aligned_cols=138  Identities=18%  Similarity=0.279  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc-------cCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccC-------CHHH
Q 018761          207 GEWWMLLAAQSMAVGTVMVRWVSK-------YSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKEL-------TSSD  272 (350)
Q Consensus       207 G~llal~aa~~~A~~~v~~r~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------~~~~  272 (350)
                      |.++++++.++.+++.++.|+..+       +.++.....+....+.+.+++..+..+++.........       +...
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            678999999999999999987533       56889999999999999999998888776422211111       2234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761          273 ILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  345 (350)
Q Consensus       273 ~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~  345 (350)
                      +..++..|++ ..+-....+..+++.+|...++...+..+...+++++++||+++..+++|.++.++|+++++
T Consensus        81 ~~~~~~~~~~-~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   81 IFLLILSGLL-AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            4455555544 34567788889999999999999999999999999999999999999999999999998765

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.03  E-value=1.1e-08  Score=98.49  Aligned_cols=136  Identities=16%  Similarity=0.178  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-hhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHH
Q 018761          207 GEWWMLLAAQSMAVGTVMVRW-VSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSA  285 (350)
Q Consensus       207 G~llal~aa~~~A~~~v~~r~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~  285 (350)
                      -...+++.-++|+.+.++.|. +...+++....++++.+++++++++....+...   ..+..+..+|..+..+|+++ .
T Consensus        14 ~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~---~~~~~~~~~~~~l~l~g~~g-~   89 (358)
T PLN00411         14 FLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR---SLPPLSVSILSKIGLLGFLG-S   89 (358)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc---ccCcchHHHHHHHHHHHHHH-H
Confidence            456777788899999999996 556789999999999999999998877653211   12233466777778788777 5


Q ss_pred             HHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHH------hCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761          286 ISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLY------LGETFSPLQLVGAAVTVVAIYLVNF  346 (350)
Q Consensus       286 l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~------lgE~~~~~~~vG~~lIl~gv~l~~~  346 (350)
                      +.+.+++.++++.+++.++++.++.|++++++++++      ++|+++..+++|.++.++|+.++..
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            567789999999999999999999999999999999      6999999999999999999887653

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.02  E-value=2.2e-08  Score=93.89  Aligned_cols=132  Identities=18%  Similarity=0.193  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761          207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI  286 (350)
Q Consensus       207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l  286 (350)
                      -.+..+...+.|+...+..|...++.+|...+.+++++++++++++.......       ..+.++|...+..|++...+
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~   81 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHP-------LPTLRQWLNAALIGLLLLAV   81 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCC-------CCcHHHHHHHHHHHHHHHHH
Confidence            34567788899999999999877899999999999999999988876654321       12356677777788777677


Q ss_pred             HHHHHHHHh-ccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761          287 SYGVYFYSA-TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  346 (350)
Q Consensus       287 ~~~l~~~al-~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~  346 (350)
                      .+.+++.+. ++.+++.++++.++.|+++.+++++ +||+++..+++|..+.++|++++..
T Consensus        82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272         82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence            888889998 9999999999999999999999986 7999999999999999999988764

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.92  E-value=4.9e-08  Score=80.12  Aligned_cols=121  Identities=17%  Similarity=0.258  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761          207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI  286 (350)
Q Consensus       207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l  286 (350)
                      |.++.+.+.++-+.+.++.|+-.++.+....... .    . ......             .+   ....+++|++++++
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~----~-~~~~~~-------------~~---p~~~i~lgl~~~~l   60 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-F----I-AALLAF-------------GL---ALRAVLLGLAGYAL   60 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-H----H-HHHHHH-------------hc---cHHHHHHHHHHHHH
Confidence            6788889999999999999986655443221111 0    0 000000             00   11246788899999


Q ss_pred             HHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHH--HhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 018761          287 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFL--YLGETFSPLQLVGAAVTVVAIYLVNFRGS  349 (350)
Q Consensus       287 ~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l--~lgE~~~~~~~vG~~lIl~gv~l~~~~~~  349 (350)
                      ++.+|.+++++.+++.+.++..+.+++..+.++.  ++||++++.+++|.++|++|++++.+.++
T Consensus        61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            9999999999999999999999999888888885  89999999999999999999999987654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.89  E-value=8.7e-08  Score=90.15  Aligned_cols=127  Identities=17%  Similarity=0.221  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHH
Q 018761          208 EWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAIS  287 (350)
Q Consensus       208 ~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~  287 (350)
                      .++.++++++|+...+..|...++.+|....+++..++++.+.++..   .+       ...   +..++..|++.....
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~---~~-------~~~---~~~~~~~g~~~~~~~   72 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVA---RP-------KVP---LNLLLGYGLTISFGQ   72 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc---CC-------CCc---hHHHHHHHHHHHHHH
Confidence            46789999999999999998778899999999999998766554431   11       111   223333454444445


Q ss_pred             HHHHHHHhcc-CChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761          288 YGVYFYSATK-GSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR  347 (350)
Q Consensus       288 ~~l~~~al~~-~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~  347 (350)
                      +.+++.++++ .+++.++++.++.|+++.++++++++|+++..+++|.++.++|+.++...
T Consensus        73 ~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~  133 (299)
T PRK11453         73 FAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED  133 (299)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence            5677788887 68899999999999999999999999999999999999999999887643

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.87  E-value=4.8e-08  Score=89.60  Aligned_cols=118  Identities=16%  Similarity=0.178  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHhh-ccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018761          218 MAVGTVMVRWVS-KYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSAT  296 (350)
Q Consensus       218 ~A~~~v~~r~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~  296 (350)
                      |+...+..|... ...++.....++.+.+.+.+.+.....           .+..++...+..|.++..+.+.+++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~   69 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-----------PPLKRLLRLLLLGALQIGVFYVLYFVAVK   69 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-----------cCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566778754 457888888888888888777664432           23456667777888888889999999999


Q ss_pred             cCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761          297 KGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  346 (350)
Q Consensus       297 ~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~  346 (350)
                      +.+++.++++..+.|+++.+++++++||++++.+++|..+.++|+.++..
T Consensus        70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        70 RLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             hcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            99999999999999999999999999999999999999999999888754

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.87  E-value=2.5e-08  Score=80.05  Aligned_cols=106  Identities=17%  Similarity=0.445  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHH
Q 018761          240 WHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGF  319 (350)
Q Consensus       240 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~  319 (350)
                      ++.+.+.+.+..+....++..  +.........+.+.+..|+++..+++.++++++++.++ .++++..+.|+++.++++
T Consensus         3 ~r~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~   79 (113)
T PF13536_consen    3 FRYLFSVLFLLIILLIRGRLR--DLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSW   79 (113)
T ss_pred             HHHHHHHHHHHHHHHHHccHH--HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHH
Confidence            556666666666655543321  11122333456666667777776899999999999995 888999999999999999


Q ss_pred             HHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          320 LYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       320 l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      ++++|+++..+++|.+++++|+.++...+
T Consensus        80 ~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   80 LFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999987654

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.85  E-value=6.1e-08  Score=90.88  Aligned_cols=213  Identities=12%  Similarity=0.070  Sum_probs=152.8

Q ss_pred             HHHHhhc--CCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHHHHhcc---------------
Q 018761          134 AMKEVLP--KAG-TFFVAAFRLIPAGLLLITFASSQGRKLPS--GFNAWVSIFLFALVDASCFQA---------------  193 (350)
Q Consensus       134 ~~K~~~~--~~~-p~~i~~~R~~~a~l~l~~~~~~~~~~~~~--~~~~~~~~~~~gl~~~~~~~~---------------  193 (350)
                      ..|++++  +.+ |..+...++..+.+.++.....+..+.++  .+..+..++..|++.......               
T Consensus        35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~  114 (316)
T KOG1441|consen   35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQT  114 (316)
T ss_pred             eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHH
Confidence            4788888  555 88888888888888877776666544333  345566666666665433221               


Q ss_pred             ------------------------------ccCC------CCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc----cCC
Q 018761          194 ------------------------------PAFD------ESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSK----YSD  233 (350)
Q Consensus       194 ------------------------------P~~~------g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~----~~~  233 (350)
                                                    |...      .++.+....|.+.++++.+..+...++.+++.+    +.|
T Consensus       115 iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~  194 (316)
T KOG1441|consen  115 IKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLN  194 (316)
T ss_pred             HHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC
Confidence                                          2111      234556678999999999999999999998763    478


Q ss_pred             hHHHHHHHHHHHHHHHH-HHHHhhcCCCcccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHH
Q 018761          234 PVMATGWHMVIGGLPLM-VISVLNHDPVYGESVK-ELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTP  311 (350)
Q Consensus       234 ~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~P  311 (350)
                      +.+...++.-.+.+.++ |+....+......... ..+... ..+++.. ++...-...-+..+.+.+|...++...+.-
T Consensus       195 ~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~  272 (316)
T KOG1441|consen  195 SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTF-LILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKR  272 (316)
T ss_pred             chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhh-HHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceE
Confidence            99999999999999888 7665544432100001 222222 2223233 333334455666899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          312 MFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       312 v~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      ++.++.+|++|+|+.++.+..|.++.+.|++++.+.|
T Consensus       273 ~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k  309 (316)
T KOG1441|consen  273 IVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAK  309 (316)
T ss_pred             EEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998765

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.82  E-value=1.1e-07  Score=89.37  Aligned_cols=130  Identities=18%  Similarity=0.125  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761          207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI  286 (350)
Q Consensus       207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l  286 (350)
                      +.+++++++++|+...+..|...++++|....++++.++++++.++..   .+       ......+..++ .+.+...+
T Consensus         5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~---~~-------~~~~~~~~~~~-~~~l~~~~   73 (295)
T PRK11689          5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVG---FP-------RLRQFPKRYLL-AGGLLFVS   73 (295)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHcc---cc-------ccccccHHHHH-HHhHHHHH
Confidence            678899999999999999999889999999999999999888776531   11       11111122222 23344444


Q ss_pred             HHHHHHHHhc----cCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761          287 SYGVYFYSAT----KGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR  347 (350)
Q Consensus       287 ~~~l~~~al~----~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~  347 (350)
                      .+.+++.+++    ..++..++++.++.|+++.++++++++|+++..+++|.++.++|++++...
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~  138 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG  138 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence            4555555654    568889999999999999999999999999999999999999999887643

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.71  E-value=3.1e-07  Score=73.47  Aligned_cols=68  Identities=10%  Similarity=0.128  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761          279 TSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  346 (350)
Q Consensus       279 ~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~  346 (350)
                      .++++.++++.++.+++++.+.+.+.++.++.++++.+++++++||++++.+++|.++|++|++++.+
T Consensus        42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34477888999999999999999999999999999999999999999999999999999999988764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.69  E-value=1.2e-06  Score=82.38  Aligned_cols=119  Identities=16%  Similarity=0.187  Sum_probs=96.5

Q ss_pred             HHHHHHHhhcc-CChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 018761          221 GTVMVRWVSKY-SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGS  299 (350)
Q Consensus       221 ~~v~~r~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~  299 (350)
                      ++++.|...++ ..|.....+++.++.+.+.+... .+..    .....+.++|..++..|++. .+.+.+.+.++++.+
T Consensus        17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s   90 (302)
T TIGR00817        17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLP----KRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVA   90 (302)
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCC----CCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence            34567877666 66888999999888776655521 1111    12345677888888888774 778999999999999


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761          300 LTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  345 (350)
Q Consensus       300 a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~  345 (350)
                      ++.++++..+.|++++++++++++|+++..+++|.+++++|+.+..
T Consensus        91 ~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~  136 (302)
T TIGR00817        91 VSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS  136 (302)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999998764

specificities overlap.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.68  E-value=5.2e-07  Score=82.31  Aligned_cols=139  Identities=14%  Similarity=0.202  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHH
Q 018761          206 SGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSA  285 (350)
Q Consensus       206 ~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~  285 (350)
                      .|.++++.+-+.|+..-.+.|.+ +..++..+..++.+.+..++..+.....+.....+ ..-++..+...+..+++ ..
T Consensus         7 ~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~~~~p~~~~~~~l~a~l-i~   83 (293)
T COG2962           7 KGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-LLKQPKTLLMLALTALL-IG   83 (293)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCcHHHHHHHHHHHH-HH
Confidence            49999999999999999999987 67899999999999999988887666544321111 11234556666656644 45


Q ss_pred             HHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761          286 ISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR  347 (350)
Q Consensus       286 l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~  347 (350)
                      .-+..|.+|.+......+|.-+++.|++.+++|.++++|+++..|++..++..+|+......
T Consensus        84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999876543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.67  E-value=1.2e-06  Score=84.30  Aligned_cols=122  Identities=11%  Similarity=0.089  Sum_probs=97.2

Q ss_pred             HHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccC--CHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018761          219 AVGTVMVRWVSKYSD-PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKEL--TSSDILALLYTSIFGSAISYGVYFYSA  295 (350)
Q Consensus       219 A~~~v~~r~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~gv~~t~l~~~l~~~al  295 (350)
                      ..+++..|...+..+ |..+..+|++++.+.+.+.......+     .+..  ...+|..++.+|++... .+...+.++
T Consensus        62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~llp~gl~~~~-~~~~~~~sl  135 (350)
T PTZ00343         62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRK-----IPRIKSLKLFLKNFLPQGLCHLF-VHFGAVISM  135 (350)
T ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCC-----CCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            344677888888899 99999999999988765543221111     1112  23466777888876654 577788999


Q ss_pred             ccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761          296 TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  346 (350)
Q Consensus       296 ~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~  346 (350)
                      ++.+++.++++..++|++++++++++++|+++..+++|.+++++|+.+...
T Consensus       136 ~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        136 GLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             hhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            999999999999999999999999999999999999999999999998764

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.52  E-value=5.9e-06  Score=76.31  Aligned_cols=137  Identities=21%  Similarity=0.319  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHH
Q 018761          206 SGEWWMLLAAQSMAVGTVMVRWVSKY-SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGS  284 (350)
Q Consensus       206 ~G~llal~aa~~~A~~~v~~r~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t  284 (350)
                      .+....+..++.|+......|...++ .+.......+...+.+...+........      .......+...+..+.+..
T Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~   80 (292)
T COG0697           7 LGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRG------LRPALRPWLLLLLLALLGL   80 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhccc------ccccccchHHHHHHHHHHH
Confidence            47788888889999999999987665 4555555557777776633333221100      0111111444555677778


Q ss_pred             HHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          285 AISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGF-LYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       285 ~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~-l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      ...+.+++.++++.+++.++++.++.|+++.++++ ++++|+++..++.|..+++.|++++..++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~  145 (292)
T COG0697          81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGG  145 (292)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCC
Confidence            88999999999999999999999999999999997 66799999999999999999999988754

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.52  E-value=2.1e-06  Score=80.52  Aligned_cols=131  Identities=16%  Similarity=0.098  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761          207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI  286 (350)
Q Consensus       207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l  286 (350)
                      +.+++++++++|+...+..|+.. ..++....  ...++.++...+......+.      ......+..-+..| +..++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~------~~~~~~~~~g~l~G-~~w~i   71 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPE------FWALSIFLVGLLSG-AFWAL   71 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCc------ccccHHHHHHHHHH-HHHHh
Confidence            57899999999999999999975 55555544  35556665555544433321      11122332222223 34788


Q ss_pred             HHHHHHHHhccCChhHHHHHHh-hHHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHHHHHhhcc
Q 018761          287 SYGVYFYSATKGSLTKLSSLTF-LTPMFASIFGFLYLGETFSPLQ----LVGAAVTVVAIYLVNFR  347 (350)
Q Consensus       287 ~~~l~~~al~~~~a~~~s~l~~-l~Pv~a~i~~~l~lgE~~~~~~----~vG~~lIl~gv~l~~~~  347 (350)
                      ++.+|+.++++.+.+.+-++.+ +.++++.+++.+++||+++..+    ++|.+++++|++++...
T Consensus        72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            9999999999999999999988 9999999999999999999999    99999999999887654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.44  E-value=0.0001  Score=67.38  Aligned_cols=213  Identities=15%  Similarity=0.070  Sum_probs=138.8

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHH---HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHH
Q 018761          114 MLLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLI---PAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASC  190 (350)
Q Consensus       114 ~~~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~---~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~  190 (350)
                      ..+..+.+...++++.....+.-..+..+||......|..   +.+++...+   .+|+.  .+++|..+.++- ++...
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~---L~r~l--s~~qW~aL~lL~-~Gv~l   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLL---LKRRL--SRRQWLALFLLV-AGVVL   86 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHH---HHccc--chhhHHHHHHHH-HHHhe
Confidence            3456778889999999999999999999999887777763   222222222   23333  346676555443 33333


Q ss_pred             hcc-ccCC----C-C------CCcchhHHHHHHHHHHHHHHHHHHHHHHhhccC--ChHHHHHHHHHHHHHHHHHHHHhh
Q 018761          191 FQA-PAFD----E-S------NSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYS--DPVMATGWHMVIGGLPLMVISVLN  256 (350)
Q Consensus       191 ~~~-P~~~----g-~------~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~  256 (350)
                      .+. +...    . .      .......|.++.+.++++-++..++..|+.|+.  +.........+.+.+..++.....
T Consensus        87 v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~  166 (244)
T PF04142_consen   87 VQLSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS  166 (244)
T ss_pred             eecCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            333 1110    0 0      123345799999999999999999999877765  334444555566666665554443


Q ss_pred             cCCCcc--cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 018761          257 HDPVYG--ESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGA  334 (350)
Q Consensus       257 ~~~~~~--~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~  334 (350)
                      +.....  +.....+...|.     -++..+++=.+....+|+.+...=........+++.++++++||.+++...++|+
T Consensus       167 ~~~~~~~~g~f~G~~~~~~~-----~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~  241 (244)
T PF04142_consen  167 DGSAISESGFFHGYSWWVWI-----VIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGA  241 (244)
T ss_pred             cccccccCCchhhcchHHHH-----HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhe
Confidence            322111  111222333333     3334444555666688999999999999999999999999999999999999998


Q ss_pred             HHH
Q 018761          335 AVT  337 (350)
Q Consensus       335 ~lI  337 (350)
                      .++
T Consensus       242 ~~V  244 (244)
T PF04142_consen  242 ALV  244 (244)
T ss_pred             ecC
Confidence            763

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.33  E-value=2.1e-05  Score=73.75  Aligned_cols=126  Identities=16%  Similarity=0.189  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHH
Q 018761          205 GSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGS  284 (350)
Q Consensus       205 ~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t  284 (350)
                      ..|..+.+++.++|+......|...++.++.....++++++++.++++.....        ...+.++|...+..|++ .
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~--------~~~~~~~~~~~~~~g~~-~   81 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWR--------LRFAKEQRLPLLFYGVS-L   81 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHh--------ccCCHHHHHHHHHHHHH-H
Confidence            35889999999999999999999888899999999999999988876643211        12345677666667754 5


Q ss_pred             HHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761          285 AISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  345 (350)
Q Consensus       285 ~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~  345 (350)
                      ++.+.++++++++.+++.++.+.++.|+++.+++.    |++..  ..+.++.++|++++.
T Consensus        82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~  136 (293)
T PRK10532         82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLL  136 (293)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheee
Confidence            66788899999999999999999999999988773    66654  455667778877654

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.02  E-value=4.2e-05  Score=67.73  Aligned_cols=146  Identities=12%  Similarity=0.044  Sum_probs=110.8

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHH
Q 018761          198 ESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSD--PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILA  275 (350)
Q Consensus       198 g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (350)
                      |........|.++.+++-..-++....+.++++.+.  ...++.+..+.+.+.+..-.++.++...-.....-.+..|+.
T Consensus       164 g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~  243 (337)
T KOG1580|consen  164 GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWD  243 (337)
T ss_pred             CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHH
Confidence            334455667999999988888888888877655443  345666777777776666655554421100112223456777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 018761          276 LLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV  344 (350)
Q Consensus       276 ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~  344 (350)
                      +..++ +++.+|+++.++-+...+|-.-|++..+.-.|+++.+.++++++++..||+|..++..++..=
T Consensus       244 l~l~a-i~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  244 LTLLA-IASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD  311 (337)
T ss_pred             HHHHH-HHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence            77777 667899999999999999999999999999999999999999999999999999999987653

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.98  E-value=0.00047  Score=63.48  Aligned_cols=142  Identities=11%  Similarity=0.031  Sum_probs=113.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHH
Q 018761          203 LWGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTS  280 (350)
Q Consensus       203 ~~~~G~llal~aa~~~A~~~v~~r~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g  280 (350)
                      ...+|..+....-++=++-+.-+.++-+  ++++..++.+..+.+++.........+.....-.....+++.+.-++...
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s  248 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS  248 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence            4456998888888888888887777654  46778889999999998888775544433211123334566777777777


Q ss_pred             HHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761          281 IFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  345 (350)
Q Consensus       281 v~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~  345 (350)
                      . +.++||.+.++-+++.++.+.+.++.+.=+++++++.+.+|.+++..|++|..+++.|+++-.
T Consensus       249 ~-~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  249 T-CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI  312 (327)
T ss_pred             H-hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence            4 457799999999999999999999999999999999999999999999999999999987654

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.93  E-value=0.00012  Score=58.33  Aligned_cols=68  Identities=9%  Similarity=0.176  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHhccCChhHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761          280 SIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR  347 (350)
Q Consensus       280 gv~~t~l~~~l~~~al~~~~a~~~s~l-~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~  347 (350)
                      .+++.++++.++.++++++|.+.+=.+ ..+.-+.+.+.++++|||++++.+++|.++|++|++.++..
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            356678899999999999999887555 55788999999999999999999999999999999998764

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.89  E-value=0.0039  Score=57.32  Aligned_cols=131  Identities=17%  Similarity=0.144  Sum_probs=97.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHH
Q 018761          202 SLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSI  281 (350)
Q Consensus       202 ~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv  281 (350)
                      .....|.+..+.+.+.|..|.+..|..  +.|+.....-+.+.-.+...++.....+.       ......|..++ .| 
T Consensus       134 ~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~~~~~~~lPqaiGm~i~a~i~~~~~~~~-------~~~k~~~~nil-~G-  202 (269)
T PF06800_consen  134 SNMKKGILALLISTIGYWIYSVIPKAF--HVSGWSAFLPQAIGMLIGAFIFNLFSKKP-------FFEKKSWKNIL-TG-  202 (269)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhc--CCChhHhHHHHHHHHHHHHHHHhhccccc-------ccccchHHhhH-HH-
Confidence            445679999999999999999998874  67887777776555555444444433221       11222333333 45 


Q ss_pred             HHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHHHH
Q 018761          282 FGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPL----QLVGAAVTVVAIYL  343 (350)
Q Consensus       282 ~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~----~~vG~~lIl~gv~l  343 (350)
                      +...++-.+|..+.+..+.+..=.+.-+..+++.+.|.++|+|+=+..    .++|.++|++|.++
T Consensus       203 ~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  203 LIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            556778999999999999999999999999999999999999997765    45677888877654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.88  E-value=1.1e-06  Score=78.95  Aligned_cols=135  Identities=19%  Similarity=0.309  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHH
Q 018761          205 GSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGS  284 (350)
Q Consensus       205 ~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t  284 (350)
                      +.|.++.-++ .++-..+++.++.. +.||......+.++-.++..+..+....+.    +.+.....|  ++.-|+.++
T Consensus        37 ~~gl~l~~vs-~ff~~~~vv~t~~~-e~~p~e~a~~r~l~~mlit~pcliy~~~~v----~gp~g~R~~--LiLRg~mG~  108 (346)
T KOG4510|consen   37 NLGLLLLTVS-YFFNSCMVVSTKVL-ENDPMELASFRLLVRMLITYPCLIYYMQPV----IGPEGKRKW--LILRGFMGF  108 (346)
T ss_pred             ccCceehhhH-HHHhhHHHhhhhhh-ccChhHhhhhhhhhehhhhheEEEEEeeee----ecCCCcEEE--EEeehhhhh
Confidence            3477777777 88888888888875 567777777775555555444443333321    111122222  344565554


Q ss_pred             HHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          285 AISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       285 ~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      . |..+.++++++.+.+.+.++.+..|+++++++|++++|+.+....+|..+.+.|++++.|+.
T Consensus       109 t-gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp  171 (346)
T KOG4510|consen  109 T-GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP  171 (346)
T ss_pred             h-HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence            4 88889999999999999999999999999999999999999999999999999999988764

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.87  E-value=0.0004  Score=66.07  Aligned_cols=77  Identities=14%  Similarity=0.221  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          271 SDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       271 ~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      ..|+.-+.+++ .-+.+.++.+.|+++.+.+-+.++.....++++++++++++++.++.+++|+++.++|+.++...+
T Consensus        77 ~~~w~y~lla~-~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD  153 (334)
T PF06027_consen   77 RPWWKYFLLAL-LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD  153 (334)
T ss_pred             hhHHHHHHHHH-HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence            45555555674 457799999999999999999999999999999999999999999999999999999998876543

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.87  E-value=0.00013  Score=58.89  Aligned_cols=68  Identities=21%  Similarity=0.310  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHhccCChhHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761          280 SIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR  347 (350)
Q Consensus       280 gv~~t~l~~~l~~~al~~~~a~~~s~l-~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~  347 (350)
                      .+++.+++++++.+++|+++.+.+=.+ ..+.-+.+.+.+++++||++++.+++|..+|++|++.+...
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            456678899999999999999988666 46889999999999999999999999999999999988763

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=97.85  E-value=0.018  Score=54.46  Aligned_cols=221  Identities=14%  Similarity=0.101  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhcCCCHHHH-HH--HHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHh
Q 018761          115 LLEWAVLVSPFFFWGTAMVAMKEVLPKAGTFFV-AA--FRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCF  191 (350)
Q Consensus       115 ~~g~llll~a~~~w~~~~v~~K~~~~~~~p~~i-~~--~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~  191 (350)
                      .+..+.+...+++++...-+.+....++||... +.  .+.+-.+++...++ .  |+.  .+++|..+. +-+.|....
T Consensus        89 ~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L-~--rkL--s~~Qw~Al~-lL~~Gv~~v  162 (345)
T KOG2234|consen   89 PRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLIL-R--RKL--SRLQWMALV-LLFAGVALV  162 (345)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHH-h--hhh--hHHHHHHHH-HHHHHHHHH
Confidence            345677788889999999888888888885443 22  33344444443333 2  222  335554433 333344555


Q ss_pred             ccccCC------CCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccC--ChHHHHHHHHHHHHHHHHHHHHhhcCCCc--
Q 018761          192 QAPAFD------ESNSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYS--DPVMATGWHMVIGGLPLMVISVLNHDPVY--  261 (350)
Q Consensus       192 ~~P~~~------g~~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--  261 (350)
                      |.|...      .........|....+++++.-++..++..|+.|+-  +....+.....+|.++.+...+..+....  
T Consensus       163 Q~~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~  242 (345)
T KOG2234|consen  163 QLPSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINE  242 (345)
T ss_pred             hccCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence            542111      12234456799999999999999999999887643  33344444455666655555544432211  


Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 018761          262 GESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAI  341 (350)
Q Consensus       262 ~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv  341 (350)
                      .+.....+...|..++..++.+     .+...-+++.+-..=.-...+..+++.+.++.++|-+|+...++|+.+|+.++
T Consensus       243 ~gff~G~s~~vw~vVl~~a~gG-----Llvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si  317 (345)
T KOG2234|consen  243 YGFFYGYSSIVWLVVLLNAVGG-----LLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSI  317 (345)
T ss_pred             CCccccccHHHHHHHHHHhccc-----hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence            2223344555565555555433     33334556666666666667788999999999999999999999999999999


Q ss_pred             HHhhc
Q 018761          342 YLVNF  346 (350)
Q Consensus       342 ~l~~~  346 (350)
                      .++..
T Consensus       318 ~lY~~  322 (345)
T KOG2234|consen  318 FLYSL  322 (345)
T ss_pred             HHhhc
Confidence            99884

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.78  E-value=0.00027  Score=55.42  Aligned_cols=68  Identities=19%  Similarity=0.277  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHhccCChhHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          281 IFGSAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       281 v~~t~l~~~l~~~al~~~~a~~~-s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      +++..++|.+..+++|++|.+.+ ++-.-+..+.+.+.|+++|||+++..+++|.+++++|++.....+
T Consensus        37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s  105 (106)
T COG2076          37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS  105 (106)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence            34567799999999999998876 667778889999999999999999999999999999999887654

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.77  E-value=0.00083  Score=53.32  Aligned_cols=65  Identities=6%  Similarity=0.118  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHhccCChhHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761          281 IFGSAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  345 (350)
Q Consensus       281 v~~t~l~~~l~~~al~~~~a~~~-s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~  345 (350)
                      +++.++++++..+++|++|.+.+ ++-..+.-+.+.+.+++++||++++.+++|.++|++|++..+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            45567899999999999998876 555568888999999999999999999999999999998875

>TIGR00803 nst UDP-galactose transporter

Probab=97.70  E-value=0.00019  Score=64.45  Aligned_cols=134  Identities=13%  Similarity=-0.013  Sum_probs=84.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhccCChH--HHHHHHHHHHHHHHHHHHHhhcCCCccccc---ccCCHHHHHHHHH
Q 018761          204 WGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPV--MATGWHMVIGGLPLMVISVLNHDPVYGESV---KELTSSDILALLY  278 (350)
Q Consensus       204 ~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~  278 (350)
                      ...|....+.+.++-++..+..++..++.+..  .-.....+.+.+......... ........   ...+...|     
T Consensus        83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----  156 (222)
T TIGR00803        83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWS-DGTLISNFGFFIGYPTAVW-----  156 (222)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhc-ccchhhccCcccCCchHHH-----
Confidence            34576677777777777778877765544321  111111122222111111111 11100000   11112222     


Q ss_pred             HHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 018761          279 TSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYL  343 (350)
Q Consensus       279 ~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l  343 (350)
                      .-++..++++.+..+.+++.++...+....++++++.+++++++||+++..+++|+.+++.|+++
T Consensus       157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            22234566788899999999999999999999999999999999999999999999999998765

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.62  E-value=0.00078  Score=53.15  Aligned_cols=68  Identities=21%  Similarity=0.260  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHhccCChhHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          281 IFGSAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       281 v~~t~l~~~l~~~al~~~~a~~~-s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      +++.++++++...++|++|.+.+ ++-.-+..+.+.+.+++++||++++.+++|..+|++|++..+..+
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~~  104 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLST  104 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhccC
Confidence            45678899999999999998876 555668889999999999999999999999999999999886543

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.58  E-value=0.002  Score=60.74  Aligned_cols=123  Identities=13%  Similarity=0.095  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHhhccC----ChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018761          217 SMAVGTVMVRWVSKYS----DPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYF  292 (350)
Q Consensus       217 ~~A~~~v~~r~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~  292 (350)
                      ++..+.+...++.++.    .+..+++.+.+...+...+........       ..+...+...+..+ +...++..+-+
T Consensus        11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~   82 (303)
T PF08449_consen   11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-------KSRKIPLKKYAILS-FLFFLASVLSN   82 (303)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-------CCCcChHHHHHHHH-HHHHHHHHHHH
Confidence            3444556666654432    366888888888888777776655411       11122233334445 44566889999


Q ss_pred             HHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761          293 YSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR  347 (350)
Q Consensus       293 ~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~  347 (350)
                      .++++++.....++....|+.+++++++++|++.+..++++..++.+|+++....
T Consensus        83 ~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~  137 (303)
T PF08449_consen   83 AALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLS  137 (303)
T ss_pred             HHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeec
Confidence            9999999999999999999999999999999999999999999999999987754

; GO: 0055085 transmembrane transport

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.52  E-value=0.001  Score=51.30  Aligned_cols=58  Identities=19%  Similarity=0.289  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHhccCChhHH-HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 018761          280 SIFGSAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVT  337 (350)
Q Consensus       280 gv~~t~l~~~l~~~al~~~~a~~~-s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lI  337 (350)
                      .+.+.++++.++.+++|+++.+.+ ++...+..+.+.+.+++++||++++.+++|..+|
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            345678899999999999999999 5556799999999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.51  E-value=0.00048  Score=64.83  Aligned_cols=118  Identities=14%  Similarity=0.140  Sum_probs=86.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHH
Q 018761          203 LWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIF  282 (350)
Q Consensus       203 ~~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~  282 (350)
                      .+..|..+++.++++.+....+.|+-..+.+....-.-                 ..    .........|    +.|++
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~-----------------~~----~~~~l~~~~W----~~G~~   58 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG-----------------SG----GRSYLRRPLW----WIGLL   58 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-----------------ch----hhHHHhhHHH----HHHHH
Confidence            45579999999999999999999985433222000000                 00    0001111112    23334


Q ss_pred             HHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761          283 GSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  345 (350)
Q Consensus       283 ~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~  345 (350)
                      ..+++..+.+.|+...|++.++++..+..++.++++..++||+++..+++|.++++.|..++.
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            456677888899999999999999999999999999999999999999999999999987654

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.017  Score=53.84  Aligned_cols=146  Identities=18%  Similarity=0.223  Sum_probs=104.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHHHhhcCCCc-cccc-ccCCHHHHHH
Q 018761          200 NSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKY--SDPVMATGWHMVIGGLPLMVISVLNHDPVY-GESV-KELTSSDILA  275 (350)
Q Consensus       200 ~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~  275 (350)
                      +.+....|..+++...++-+.+.+..|+..+.  ..-..++.+..+.....+....+++++.+. .... ...+...+..
T Consensus       151 d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~  230 (314)
T KOG1444|consen  151 DLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVV  230 (314)
T ss_pred             cceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHH
Confidence            33444458999999999999999999986443  344567788888888888888877766431 0011 1223445666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761          276 LLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  346 (350)
Q Consensus       276 ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~  346 (350)
                      ++..++.+.++.| +-.+..+..+++..++.....-..+.+-+.+++|++.++..++|..+-..|..+++.
T Consensus       231 ~~lScv~gf~isy-~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~  300 (314)
T KOG1444|consen  231 MLLSCVMGFGISY-TSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY  300 (314)
T ss_pred             HHHHHHHHHHHHH-HHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence            6766766656544 455677778888888888677777777777777888999999999988877766654

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.44  E-value=0.0023  Score=61.10  Aligned_cols=137  Identities=15%  Similarity=0.072  Sum_probs=95.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHH----hhcCCCcccccccCCHHHHHHHHHH
Q 018761          204 WGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISV----LNHDPVYGESVKELTSSDILALLYT  279 (350)
Q Consensus       204 ~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~  279 (350)
                      ...|.++.+++++|++.+.+-.|+. ++-|-...  |- +.+. +..++..    ....+...+.....+...+..-+..
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~w~wE~~--W~-v~gi-~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~   79 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKKV-KKWSWETM--WS-VGGI-FSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF   79 (345)
T ss_pred             hHHHHHHHHHHHHHhhccccccccc-CCCchhHH--HH-HHHH-HHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence            3459999999999999999999995 44443222  32 2222 2222211    1112222222344566666655555


Q ss_pred             HHHHHHHHHHHHHHHhccCChhHHHHHH-hhHHHHHHHHHHHHhCCCC---C----HHHHHHHHHHHHHHHHhhc
Q 018761          280 SIFGSAISYGVYFYSATKGSLTKLSSLT-FLTPMFASIFGFLYLGETF---S----PLQLVGAAVTVVAIYLVNF  346 (350)
Q Consensus       280 gv~~t~l~~~l~~~al~~~~a~~~s~l~-~l~Pv~a~i~~~l~lgE~~---~----~~~~vG~~lIl~gv~l~~~  346 (350)
                      | +...+++..+..++|+++.+..-++. -++.+.+.+++.+++||..   +    ...++|.+++++|+++..+
T Consensus        80 G-~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         80 G-ALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             H-HHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            5 55788999999999999999887664 5789999999999999876   2    2467888999999999987

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=97.38  E-value=0.066  Score=49.72  Aligned_cols=143  Identities=14%  Similarity=0.130  Sum_probs=99.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhccC-----ChHHHHHHHHHHHHHHHHHHHHhhcCCCcc---cccccCCH-HH
Q 018761          202 SLWGSGEWWMLLAAQSMAVGTVMVRWVSKYS-----DPVMATGWHMVIGGLPLMVISVLNHDPVYG---ESVKELTS-SD  272 (350)
Q Consensus       202 ~~~~~G~llal~aa~~~A~~~v~~r~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~-~~  272 (350)
                      +....|..+.+++.++-++...+.+++.++.     +|...+....-.-.+.++|..+.++++...   ..+...+. ..
T Consensus       160 qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~  239 (349)
T KOG1443|consen  160 QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLI  239 (349)
T ss_pred             ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHH
Confidence            3445699999999988888888887765543     466666666666666777777777666332   11111222 12


Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761          273 ILALLYTSIFGSAISYG---VYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  345 (350)
Q Consensus       273 ~~~ll~~gv~~t~l~~~---l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~  345 (350)
                      +..+..++ ++..+++.   ..+.-+.+.+....++..-..-+.+.++|.++.+|.++...|+|..+...|+....
T Consensus       240 ~rv~g~i~-l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~  314 (349)
T KOG1443|consen  240 LRVIGLIS-LGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHR  314 (349)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhc
Confidence            33333333 23333443   33446788899999999999999999999999999999999999999999998873

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.37  E-value=0.0095  Score=49.49  Aligned_cols=131  Identities=15%  Similarity=0.127  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHH
Q 018761          207 GEWWMLLAAQSMAVGTVMVRWVSKYSD-PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSA  285 (350)
Q Consensus       207 G~llal~aa~~~A~~~v~~r~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~  285 (350)
                      ..++++.++.+-++...+..++.++.+ +.....+....+.+.+..+....+++.    .......+|+..  +|-+..+
T Consensus         2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~----~~~~~~~p~w~~--lGG~lG~   75 (138)
T PF04657_consen    2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPS----LASLSSVPWWAY--LGGLLGV   75 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccc----cchhccCChHHh--ccHHHHH
Confidence            357889999999999999888888776 999999999999999988888776541    222222233332  2434446


Q ss_pred             HHHHHHHHHhccCChhHHHHHHhh-HHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHHHHH
Q 018761          286 ISYGVYFYSATKGSLTKLSSLTFL-TPMFASIFGFL----YLGETFSPLQLVGAAVTVVAIYL  343 (350)
Q Consensus       286 l~~~l~~~al~~~~a~~~s~l~~l-~Pv~a~i~~~l----~lgE~~~~~~~vG~~lIl~gv~l  343 (350)
                      +-..+....+++++++....+... +.+.+.++..+    .-++++++.+++|.+++++|+++
T Consensus        76 ~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   76 FFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            677788889999999887766554 44555555554    23577999999999999999864

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=97.30  E-value=0.00088  Score=60.27  Aligned_cols=141  Identities=16%  Similarity=0.157  Sum_probs=105.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHH
Q 018761          200 NSSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYT  279 (350)
Q Consensus       200 ~~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  279 (350)
                      +.+....||.+.+++|-+||+.++.-..+.++.|-...+....++|++....-... +....  ...+++   |....++
T Consensus       160 ggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ~i~-~~~~~--~tl~w~---~~i~~yl  233 (336)
T KOG2766|consen  160 GGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQFIF-ERHHV--STLHWD---SAIFLYL  233 (336)
T ss_pred             CCCCCccCcEEEEecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh-hccce--eeEeeh---HHHHHHH
Confidence            34566679999999999999999999999899999999999999999999888443 33211  112222   3333333


Q ss_pred             H-HHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          280 S-IFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       280 g-v~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      . .++..+-|.+.-..+|.-+++...+-..+.-.|+.+.  ..||-..+|.-++..+.+..|.++...++
T Consensus       234 ~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re  301 (336)
T KOG2766|consen  234 RFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE  301 (336)
T ss_pred             HHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence            3 2344444555555778888888777777888888887  66788899999999999999998876554

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.30  E-value=0.18  Score=48.35  Aligned_cols=146  Identities=14%  Similarity=0.036  Sum_probs=87.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHH-------HHHHHh-hccCChHHHHHHHHH---HHHHHHHHH-HHh---hcCCCcccccc
Q 018761          202 SLWGSGEWWMLLAAQSMAVGT-------VMVRWV-SKYSDPVMATGWHMV---IGGLPLMVI-SVL---NHDPVYGESVK  266 (350)
Q Consensus       202 ~~~~~G~llal~aa~~~A~~~-------v~~r~~-~~~~~~~~~~~~~~~---~~~v~~~~~-~~~---~~~~~~~~~~~  266 (350)
                      ....+|.++++++.+.++.|.       ...+.. ..+.++.....-+.+   ++....-++ +..   .++..-.....
T Consensus       170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~  249 (345)
T PRK13499        170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADF  249 (345)
T ss_pred             cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhc
Confidence            456789999999999999999       443321 123455444444433   444433332 222   11110000001


Q ss_pred             cCCHHHHHHH---HHHHHHHHHHHHHHHHHHhccCChhHHHH---HH-hhHHHHHHHHHHHHhCCCCC------HHHHHH
Q 018761          267 ELTSSDILAL---LYTSIFGSAISYGVYFYSATKGSLTKLSS---LT-FLTPMFASIFGFLYLGETFS------PLQLVG  333 (350)
Q Consensus       267 ~~~~~~~~~l---l~~gv~~t~l~~~l~~~al~~~~a~~~s~---l~-~l~Pv~a~i~~~l~lgE~~~------~~~~vG  333 (350)
                      ..+...+..-   -.++-+...+++.+|..+.++.+......   +. -+..+++.++|.+ ++|+=+      ...++|
T Consensus       250 ~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~-lkE~K~a~~k~~~~l~~G  328 (345)
T PRK13499        250 SLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV-LKEWKGASRRPVRVLSLG  328 (345)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh-hhhccCCCccchhHHHHH
Confidence            1111111111   12333556778889999888886654444   44 6777999999994 999877      667899


Q ss_pred             HHHHHHHHHHhhccC
Q 018761          334 AAVTVVAIYLVNFRG  348 (350)
Q Consensus       334 ~~lIl~gv~l~~~~~  348 (350)
                      .+++++|..++...+
T Consensus       329 ~vliI~g~~lig~~~  343 (345)
T PRK13499        329 CVVIILAANIVGLGN  343 (345)
T ss_pred             HHHHHHHHHHHhhcc
Confidence            999999998877643

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.29  E-value=0.0027  Score=58.35  Aligned_cols=110  Identities=15%  Similarity=0.191  Sum_probs=78.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHH-hhHH
Q 018761          233 DPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLT-FLTP  311 (350)
Q Consensus       233 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~-~l~P  311 (350)
                      +|.+-+.-..+.+.++.+...++. ++.     ...+...+..-+..| +...+++...+++.++.+.+++-++. -++.
T Consensus        11 ~~~~Q~lG~t~Gali~alv~~~~~-~p~-----~~~~~~~~~~~~lsG-~~W~iGq~~qf~s~~~~GVS~tmPiStg~QL   83 (269)
T PF06800_consen   11 KPANQILGTTIGALIFALVVFLFR-QPA-----FSMSGTSFIVAFLSG-AFWAIGQIGQFKSFKKIGVSKTMPISTGLQL   83 (269)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHh-CCC-----cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcceeeeccchhHHH
Confidence            444444444555555555444443 321     112335555555555 66788999999999999999999998 6778


Q ss_pred             HHHHHHHHHHhCCCCCHHHHH----HHHHHHHHHHHhhccCC
Q 018761          312 MFASIFGFLYLGETFSPLQLV----GAAVTVVAIYLVNFRGS  349 (350)
Q Consensus       312 v~a~i~~~l~lgE~~~~~~~v----G~~lIl~gv~l~~~~~~  349 (350)
                      +.+.+++.++|||+.+..+++    +.+++++|+++..++++
T Consensus        84 vg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~  125 (269)
T PF06800_consen   84 VGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDK  125 (269)
T ss_pred             HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccc
Confidence            889999999999998876654    66789999999987654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.81  E-value=0.025  Score=51.53  Aligned_cols=141  Identities=13%  Similarity=0.023  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccC---CHHHHHHHHHH
Q 018761          205 GSGEWWMLLAAQSMAVGTVMVRWVSKY--SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKEL---TSSDILALLYT  279 (350)
Q Consensus       205 ~~G~llal~aa~~~A~~~v~~r~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~  279 (350)
                      ..|..+.-+|-++=|.-.-++.+..+.  .+...++.+...+|.+.++..+...++-.  ..|...   +.+..+..+..
T Consensus       189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f--~a~~fcaehp~~tyGy~~~~  266 (367)
T KOG1582|consen  189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELF--SAWTFCAEHPVRTYGYAFLF  266 (367)
T ss_pred             eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccch--hhhHHHHhCcHhHHHHHHHH
Confidence            347776666666666666666654443  34466778888999998888877765531  122211   23344555555


Q ss_pred             HHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          280 SIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       280 gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      + ..+-+|+.....-++..+|..++.+....--+++++++++|..++|.+..-|+.+|+.|+++-...|
T Consensus       267 s-~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  267 S-LAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             H-HHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            5 3345578888888899999999999999999999999999999999999999999999999877655

>COG2510 Predicted membrane protein [Function unknown]

Probab=96.72  E-value=0.0095  Score=48.17  Aligned_cols=71  Identities=18%  Similarity=0.208  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHHHHHH
Q 018761          117 EWAVLVSPFFFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPS---GFNAWVSIFLFALVD  187 (350)
Q Consensus       117 g~llll~a~~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~---~~~~~~~~~~~gl~~  187 (350)
                      ..++.++++++||...++.|...+++||....+.|.+...+++..+....++....   .+|.|..+.+.|+.+
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~   77 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG   77 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH
Confidence            46788999999999999999999999999999999999999998888877655433   556666666555443

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.0078  Score=54.87  Aligned_cols=147  Identities=16%  Similarity=0.103  Sum_probs=104.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccC-CHHHHHHHH
Q 018761          201 SSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSD--PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKEL-TSSDILALL  277 (350)
Q Consensus       201 ~~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll  277 (350)
                      ......|.++++.+.++-|+..+..|+.....+  ....+.+..+.+.++.+|...+.++-+..-..++. +...|..+.
T Consensus       180 ~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mt  259 (347)
T KOG1442|consen  180 GTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMT  259 (347)
T ss_pred             CccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHH
Confidence            344567999999999999999999998544332  36677888899999999988887665332222233 455666666


Q ss_pred             HHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          278 YTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       278 ~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      ..|+++..++|.-. +=+|-.+|-+..+-....-..-.+++..+++|.-+..-|-|-++|+.|...+.+.|
T Consensus       260 LsglfgF~mgyvTg-~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk  329 (347)
T KOG1442|consen  260 LSGLFGFAMGYVTG-WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK  329 (347)
T ss_pred             HHHHHHHHhhheee-EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence            66766655554321 12444555555555555666677888899999999999999999999988776543

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=96.61  E-value=0.014  Score=53.38  Aligned_cols=77  Identities=21%  Similarity=0.260  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          271 SDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       271 ~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      .+......=+ +...+...+.+.++++.+|+.-.++.-+..++++++.++++|++++..||++..+..+|+.+++...
T Consensus        15 ~~~~~~~vPA-~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~   91 (244)
T PF04142_consen   15 KDTLKLAVPA-LLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS   91 (244)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence            3444444445 3467788899999999999999999999999999999999999999999999999999999887643

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.60  E-value=0.096  Score=46.52  Aligned_cols=142  Identities=15%  Similarity=0.141  Sum_probs=108.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHH
Q 018761          203 LWGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTS  280 (350)
Q Consensus       203 ~~~~G~llal~aa~~~A~~~v~~r~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g  280 (350)
                      ..+.|.+|+....+.-+.+....|+.-+  ...-...++|..+++..++....+.++++....-....+.+...++...|
T Consensus       152 ~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISg  231 (309)
T COG5070         152 ILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISG  231 (309)
T ss_pred             ccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHH
Confidence            3456889999999999999999987432  22335678899999999999998888776432112344555666666666


Q ss_pred             HHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761          281 IFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  345 (350)
Q Consensus       281 v~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~  345 (350)
                       ++++.--++--|.++-.+.+.-+++..+.-.-..+-|.++|+|+.+...+....+-..+..++.
T Consensus       232 -l~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYa  295 (309)
T COG5070         232 -LCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYA  295 (309)
T ss_pred             -HHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence             4444455677889999999999999999999999999999999999999888876665544443

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.52  E-value=0.12  Score=43.22  Aligned_cols=139  Identities=12%  Similarity=0.176  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHH
Q 018761          206 SGEWWMLLAAQSMAVGTVMVRWVSKYSD-PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGS  284 (350)
Q Consensus       206 ~G~llal~aa~~~A~~~v~~r~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t  284 (350)
                      ...+.+++++.+..+..-+.-++.+..+ |.....+....|.+.+..+.+..++...   +.......|+..+ =|++ .
T Consensus         5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~---~a~~~~~pwW~~~-GG~l-G   79 (150)
T COG3238           5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPG---LAAVASAPWWAWI-GGLL-G   79 (150)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCc---hhhccCCchHHHH-ccch-h
Confidence            3567888888888888888777766665 7788888888888888877766433321   1111122333222 1323 2


Q ss_pred             HHHHHHHHHHhccCChhH-HHHHHhhHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHhhccCC
Q 018761          285 AISYGVYFYSATKGSLTK-LSSLTFLTPMFASIFGFLYLG----ETFSPLQLVGAAVTVVAIYLVNFRGS  349 (350)
Q Consensus       285 ~l~~~l~~~al~~~~a~~-~s~l~~l~Pv~a~i~~~l~lg----E~~~~~~~vG~~lIl~gv~l~~~~~~  349 (350)
                      ++-.+.......+++++. ......-+-+.+++..-+=+.    .+++...++|++++++|+++.+++++
T Consensus        80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~~  149 (150)
T COG3238          80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFGA  149 (150)
T ss_pred             hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccccc
Confidence            333444555667766654 444555566666666554433    56999999999999999777776654

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.50  E-value=0.0014  Score=58.67  Aligned_cols=132  Identities=15%  Similarity=0.118  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761          207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI  286 (350)
Q Consensus       207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l  286 (350)
                      ..+.+++=++.|+..-....|.  .-+|..-+.-..+.+.++...+.++. .       +.++...+..-+..| ....+
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~--GG~p~qQ~lGtT~GALifaiiv~~~~-~-------p~~T~~~~iv~~isG-~~Ws~   71 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF--GGKPYQQTLGTTLGALIFAIIVFLFV-S-------PELTLTIFIVGFISG-AFWSF   71 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec--CCChhHhhhhccHHHHHHHHHHheee-c-------CccchhhHHHHHHhh-hHhhh
Confidence            5688999999999988887776  33555555555555555555444432 2       234555554444445 45677


Q ss_pred             HHHHHHHHhccCChhHHHHHHh-hHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHHHhhccCC
Q 018761          287 SYGVYFYSATKGSLTKLSSLTF-LTPMFASIFGFLYLGETFSPLQL----VGAAVTVVAIYLVNFRGS  349 (350)
Q Consensus       287 ~~~l~~~al~~~~a~~~s~l~~-l~Pv~a~i~~~l~lgE~~~~~~~----vG~~lIl~gv~l~~~~~~  349 (350)
                      ||...+++++..+.+++.++.. ++.|-+.++|.+.|+|+.+..++    ++.+++++|+++..+++|
T Consensus        72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            9999999999999999999865 78889999999999999998765    455688899999888765

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=96.45  E-value=0.1  Score=47.88  Aligned_cols=144  Identities=21%  Similarity=0.216  Sum_probs=100.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhhcCCCcc---cccccCCHHHHHH-
Q 018761          202 SLWGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMATGWHMVIGGLPLMVISVLNHDPVYG---ESVKELTSSDILA-  275 (350)
Q Consensus       202 ~~~~~G~llal~aa~~~A~~~v~~r~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-  275 (350)
                      +....|+++.+.+-+.-|+.+++-.|..+  +++|...++|..++|.+.+...+.....-...   ..-+.-..++|.. 
T Consensus       172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~  251 (372)
T KOG3912|consen  172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDA  251 (372)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHH
Confidence            44556999999999999999999877544  57899999999999976655544322111000   0011122334433 


Q ss_pred             --------HHHHHHHHHHHHHHHHHHH----hccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 018761          276 --------LLYTSIFGSAISYGVYFYS----ATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYL  343 (350)
Q Consensus       276 --------ll~~gv~~t~l~~~l~~~a----l~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l  343 (350)
                              .++++..+..+.-.+|+.+    -+..++++=.++..+...+.=+++....-|.+...|+.|.++.+.|+++
T Consensus       252 ~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~l  331 (372)
T KOG3912|consen  252 FAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIIL  331 (372)
T ss_pred             HHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    2444444555555555542    3556888888888888888888888888899999999999999999988


Q ss_pred             hh
Q 018761          344 VN  345 (350)
Q Consensus       344 ~~  345 (350)
                      ++
T Consensus       332 Y~  333 (372)
T KOG3912|consen  332 YN  333 (372)
T ss_pred             HH
Confidence            76

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.40  E-value=0.0072  Score=48.18  Aligned_cols=109  Identities=14%  Similarity=0.122  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018761          213 LAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYF  292 (350)
Q Consensus       213 ~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~  292 (350)
                      +-+++|+..+-+.|+-.+..+...... +..-....     +               ...|-..+  .++....|-.+|+
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~-----L---------------l~n~~y~i--pf~lNq~GSv~f~   59 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKF-----L---------------LLNPKYII--PFLLNQSGSVLFF   59 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHH-----H---------------HHhHHHHH--HHHHHHHHHHHHH
Confidence            346888999999998655544433221 21111111     0               11122222  2233344788899


Q ss_pred             HHhccCChhHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q 018761          293 YSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLV  344 (350)
Q Consensus       293 ~al~~~~a~~~s~l-~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~  344 (350)
                      +.+.+.+.+.+.++ +.+.-+++++.++++.+|..+...++|+++|+.|+.+.
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            99999999999999 59999999999999888888999999999999998764

Many members are annotated as potential transmembrane proteins.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=96.22  E-value=0.035  Score=44.05  Aligned_cols=41  Identities=27%  Similarity=0.472  Sum_probs=34.8

Q ss_pred             HHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 018761          126 FFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQG  167 (350)
Q Consensus       126 ~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~  167 (350)
                      ++||...++.|...++.||....++|++.+.+ ++++....+
T Consensus         1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   41 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILG   41 (126)
T ss_pred             ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhc
Confidence            47999999999999999999999999999997 555554443

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=95.73  E-value=0.0075  Score=54.15  Aligned_cols=136  Identities=20%  Similarity=0.164  Sum_probs=89.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHH
Q 018761          202 SLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSI  281 (350)
Q Consensus       202 ~~~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv  281 (350)
                      +..-.|....+.+.+.|-.|.++.+..  ++|......-|.+ |.+...+..-..+..      ...+...|.. +.-| 
T Consensus       148 ~n~kkgi~~L~iSt~GYv~yvvl~~~f--~v~g~saiLPqAi-GMv~~ali~~~~~~~------~~~~K~t~~n-ii~G-  216 (288)
T COG4975         148 SNLKKGIVILLISTLGYVGYVVLFQLF--DVDGLSAILPQAI-GMVIGALILGFFKME------KRFNKYTWLN-IIPG-  216 (288)
T ss_pred             HhhhhheeeeeeeccceeeeEeeeccc--cccchhhhhHHHH-HHHHHHHHHhhcccc------cchHHHHHHH-HhhH-
Confidence            334568888888999999999888876  3555554444332 222222222222210      1122233333 3345 


Q ss_pred             HHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHHHhhccC
Q 018761          282 FGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQL----VGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       282 ~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~----vG~~lIl~gv~l~~~~~  348 (350)
                      +-.+++...+..+-++.+.+..=.+.=+..+++.+-|.++++|+=|..++    +|.+++++|..+....|
T Consensus       217 ~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K  287 (288)
T COG4975         217 LIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK  287 (288)
T ss_pred             HHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence            44677888999999988888777777888899999999999999988765    67778888877765544

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=94.82  E-value=0.17  Score=44.15  Aligned_cols=212  Identities=13%  Similarity=0.042  Sum_probs=120.1

Q ss_pred             HHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHhccccCCCCCCcchh
Q 018761          126 FFWGTAMVAMKEVLPKAGTFFVAAFRLIPAGLLLITFASSQGRKLPSGFNAWVSIFLFALVDASCFQAPAFDESNSSLWG  205 (350)
Q Consensus       126 ~~w~~~~v~~K~~~~~~~p~~i~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~P~~~g~~~~~~~  205 (350)
                      ++|-......-.++..++|......-..-++.+.+.-+...+.+.-.. +....+  .+..+....   ...........
T Consensus        61 i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~-kIlaai--lAI~GiVmi---ay~DN~~a~e~  134 (290)
T KOG4314|consen   61 IFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF-KILAAI--LAIGGIVMI---AYADNEHADEI  134 (290)
T ss_pred             EEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh-hHHHHH--HHhCcEEEE---Eeccchhhhhh
Confidence            345444444444455566666555555555544444333333333221 111111  111111110   00111222334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHH---HHH-H--HHHhhcCCCcccccccCCHHHHHHHHHH
Q 018761          206 SGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGL---PLM-V--ISVLNHDPVYGESVKELTSSDILALLYT  279 (350)
Q Consensus       206 ~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v---~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~  279 (350)
                      .|...++++|..-|+|-+.-|+....-+--....+....|..   +.. +  +..+++-    ++++......|+.+...
T Consensus       135 iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~V----E~~qsFA~~PWG~l~G~  210 (290)
T KOG4314|consen  135 IGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGV----EHLQSFAAAPWGCLCGA  210 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhch----HHHHHHhhCCchhhhhH
Confidence            599999999999999999999875544433333333333222   111 1  1112211    13444445567777766


Q ss_pred             HHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          280 SIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       280 gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      +.+..+ -..+.+.++....|...|+-......-......++-+-..+...++|..+|++|-++...+.
T Consensus       211 A~L~lA-FN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~  278 (290)
T KOG4314|consen  211 AGLSLA-FNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE  278 (290)
T ss_pred             HHHHHH-HhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence            655433 45566778888889888888888888888888887666688899999999999988776543

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=94.41  E-value=0.04  Score=47.96  Aligned_cols=61  Identities=18%  Similarity=0.354  Sum_probs=57.0

Q ss_pred             HHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761          287 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR  347 (350)
Q Consensus       287 ~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~  347 (350)
                      +.++|..|+++++++.++.+..-.-.|..+++|+.+||++....++.+++.+.|+++..+.
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~  126 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA  126 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence            6788999999999999999999999999999999999999999999999999998877654

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=93.96  E-value=2.3  Score=40.45  Aligned_cols=114  Identities=17%  Similarity=0.163  Sum_probs=79.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccC------CHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHH
Q 018761          232 SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKEL------TSSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSS  305 (350)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~  305 (350)
                      +.+.+.+...=++-.+++..+.+..............      .+.+...+..=+ +..++-..+++.++...+|+.-.+
T Consensus        45 f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa-~iYalqNnl~yval~~ldaatyqV  123 (345)
T KOG2234|consen   45 FLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPA-LIYALQNNLQYVALSNLDAATYQV  123 (345)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHH-HHHHHhhhHHHHHHhcCCchhhhh
Confidence            4566666666677777777776655311000001111      111222222222 234555568888999999999999


Q ss_pred             HHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761          306 LTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  346 (350)
Q Consensus       306 l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~  346 (350)
                      .+-+..+.++++..++++++++..||....+..+|+.+++.
T Consensus       124 t~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~  164 (345)
T KOG2234|consen  124 TYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL  164 (345)
T ss_pred             hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999983

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.85  E-value=0.022  Score=53.13  Aligned_cols=117  Identities=13%  Similarity=0.150  Sum_probs=86.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHH
Q 018761          204 WGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFG  283 (350)
Q Consensus       204 ~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~  283 (350)
                      +..|.++++.+.+..+...++.|+-.++...   ..              ...++.    ..... .+   ++-+.|++.
T Consensus        19 ~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~--------------~ra~~g----g~~yl-~~---~~Ww~G~lt   73 (335)
T KOG2922|consen   19 NIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SG--------------LRAGEG----GYGYL-KE---PLWWAGMLT   73 (335)
T ss_pred             ceeeeeehhhccEEEeeehhhhHHHHHHHhh---hc--------------ccccCC----Ccchh-hh---HHHHHHHHH
Confidence            3458888888888888888888875443221   00              000110    11111 11   233456777


Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761          284 SAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  345 (350)
Q Consensus       284 t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~  345 (350)
                      .++|-.+.+.|....|++.++++..+..++.++++..+++|+++....+|.++.++|..+..
T Consensus        74 m~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV  135 (335)
T KOG2922|consen   74 MIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV  135 (335)
T ss_pred             HHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence            88899999999999999999999999999999999999999999999999998888865543

>PRK02237 hypothetical protein; Provisional

Probab=93.55  E-value=0.65  Score=36.43  Aligned_cols=46  Identities=11%  Similarity=0.130  Sum_probs=39.3

Q ss_pred             HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 018761          304 SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  349 (350)
Q Consensus       304 s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~~  349 (350)
                      +.+.-...+.+.+++|.+-|++|+.+.++|++++++|+.++....|
T Consensus        63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR  108 (109)
T PRK02237         63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR  108 (109)
T ss_pred             HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence            4555667788899999999999999999999999999988866544

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=93.33  E-value=0.063  Score=50.74  Aligned_cols=115  Identities=23%  Similarity=0.299  Sum_probs=78.0

Q ss_pred             HHHHhhcc---CChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Q 018761          224 MVRWVSKY---SDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAISYGVYFYSATKGSL  300 (350)
Q Consensus       224 ~~r~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a  300 (350)
                      ..|+..+.   .-|.+.+..+...+.+.+...-.....+.    ....+...|..++-+|++ ..++..+-+.++++.+.
T Consensus        35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~----~~~~~~~~~~~llpl~~~-~~~~~v~~n~Sl~~v~V  109 (316)
T KOG1441|consen   35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPP----SKISSKLPLRTLLPLGLV-FCISHVLGNVSLSYVPV  109 (316)
T ss_pred             eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCC----CccccccchHHHHHHHHH-HHHHHHhcchhhhccch
Confidence            34665552   23455666655566555555543332221    122234567777778855 56699999999999999


Q ss_pred             hHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 018761          301 TKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYL  343 (350)
Q Consensus       301 ~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l  343 (350)
                      +....+-.++|+++.++++++.+|+.+...+.-...|+.|+.+
T Consensus       110 sF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~i  152 (316)
T KOG1441|consen  110 SFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAI  152 (316)
T ss_pred             hHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEE
Confidence            9999999999999999999999999888655544444444443

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=93.32  E-value=1.9  Score=41.03  Aligned_cols=142  Identities=13%  Similarity=-0.026  Sum_probs=89.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHH
Q 018761          204 WGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFG  283 (350)
Q Consensus       204 ~~~G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~  283 (350)
                      ...|.++-.+++++-+.+.+=.||+ |+-+-...=..+.+++-++.=.+.....-|++.+-....+...+......|+ -
T Consensus         5 ii~Gii~h~iGg~~~~sfy~P~kkv-k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~-l   82 (344)
T PF06379_consen    5 IILGIIFHAIGGFASGSFYVPFKKV-KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV-L   82 (344)
T ss_pred             HHHHHHHHHHHHHHhhhhccchhhc-CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH-H
Confidence            3469999999999999999999998 4444433333333333332222222222332222223344455666565664 4


Q ss_pred             HHHHHHHHHHHhccCChhHH-HHHHhhHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHhhcc
Q 018761          284 SAISYGVYFYSATKGSLTKL-SSLTFLTPMFASIFGFLYLGE-------TFSPLQLVGAAVTVVAIYLVNFR  347 (350)
Q Consensus       284 t~l~~~l~~~al~~~~a~~~-s~l~~l~Pv~a~i~~~l~lgE-------~~~~~~~vG~~lIl~gv~l~~~~  347 (350)
                      .+++-..|-.++|+++.+.. ++..-+.-+++.++--++.|+       +-....++|.+++++|+.+..+.
T Consensus        83 WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A  154 (344)
T PF06379_consen   83 WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA  154 (344)
T ss_pred             HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence            68889999999999987764 444555666666665555442       23456889999999999988653

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=92.20  E-value=1.7  Score=40.11  Aligned_cols=137  Identities=14%  Similarity=0.136  Sum_probs=81.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHH---------hhcCCCcccccccCCHHH
Q 018761          204 WGSGEWWMLLAAQSMAVGTVMVRWVSK--YSDPVMATGWHMVIGGLPLMVISV---------LNHDPVYGESVKELTSSD  272 (350)
Q Consensus       204 ~~~G~llal~aa~~~A~~~v~~r~~~~--~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~~~~~~~~~~~  272 (350)
                      |..|..+...+-+.-|...+.+...-+  .-++-..+++.-.......+.+.-         ...+.-........-+..
T Consensus       162 w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~  241 (330)
T KOG1583|consen  162 WLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSM  241 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHH
Confidence            445666555555555555555433211  236677777777666554443310         000100000000112234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----ccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Q 018761          273 ILALLYTSIFGSAISYGVYFYSA----TKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVN  345 (350)
Q Consensus       273 ~~~ll~~gv~~t~l~~~l~~~al----~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~  345 (350)
                      |..++..     .+.|++-.+++    ...++-+++++..+.=.++.+++.++|.+.++++.|+|++++..|.++..
T Consensus       242 ~~yLl~n-----~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa  313 (330)
T KOG1583|consen  242 WVYLLFN-----VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA  313 (330)
T ss_pred             HHHHHHH-----HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            4444433     33444444443    44566667788889999999999999999999999999999999988765

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=91.84  E-value=0.34  Score=46.34  Aligned_cols=66  Identities=12%  Similarity=0.131  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          283 GSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       283 ~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      -..++.+.++.|+.+.+++-..++..+.-+|+..+|.++.+|++++..+++..+-++|++++...+
T Consensus       168 lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~  233 (416)
T KOG2765|consen  168 LWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGD  233 (416)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecc
Confidence            356789999999999999999999999999999999999999999999999999999999988763

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=91.66  E-value=3.3  Score=37.75  Aligned_cols=103  Identities=17%  Similarity=0.208  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761          207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI  286 (350)
Q Consensus       207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l  286 (350)
                      ..++.++++++--.+.-+.|.+-..+.+.-.+.++..++++++.++.-    |    .....+..+|..++..| ++.+.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~R----P----wr~r~~~~~~~~~~~yG-vsLg~   83 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFR----P----WRRRLSKPQRLALLAYG-VSLGG   83 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhh----H----HHhccChhhhHHHHHHH-HHHHH
Confidence            467778888888888888898888899999999999999888776642    1    11356778888888888 45566


Q ss_pred             HHHHHHHHhccCChhHHHHHHhhHHHHHHHHH
Q 018761          287 SYGVYFYSATKGSLTKLSSLTFLTPMFASIFG  318 (350)
Q Consensus       287 ~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~  318 (350)
                      -..+++.++++++-..+..+.++.|+...+++
T Consensus        84 MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~  115 (292)
T COG5006          84 MNLLFYLSIERIPLGIAVAIEFTGPLAVALLS  115 (292)
T ss_pred             HHHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence            78899999999999999999999998776654

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=90.85  E-value=0.55  Score=36.75  Aligned_cols=46  Identities=17%  Similarity=0.275  Sum_probs=39.4

Q ss_pred             HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 018761          304 SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  349 (350)
Q Consensus       304 s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~~  349 (350)
                      +.+.-...+.+.+++|.+-|++|+.+.++|+.++++|+.++....|
T Consensus        61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            3445556688999999999999999999999999999998877655

; GO: 0016020 membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.07  E-value=16  Score=34.37  Aligned_cols=125  Identities=15%  Similarity=0.118  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHH----HHHHHhhccCC-hHH--HHHHHHHHHHHHHHHHHHhh--cCCCcccccccCCHHHHHHH--HHHH
Q 018761          212 LLAAQSMAVGT----VMVRWVSKYSD-PVM--ATGWHMVIGGLPLMVISVLN--HDPVYGESVKELTSSDILAL--LYTS  280 (350)
Q Consensus       212 l~aa~~~A~~~----v~~r~~~~~~~-~~~--~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l--l~~g  280 (350)
                      ++++++|++..    +..|.+...++ +..  ....|.+.+.+.+...-...  +.+.    ...-....|..+  ++.+
T Consensus        14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~----l~~~~~kk~~P~~~lf~~   89 (314)
T KOG1444|consen   14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRP----LDLRTAKKWFPVSLLFVG   89 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCC----cChHHHHHHccHHHHHHH
Confidence            45555665554    44455433333 333  33478877777666553321  1111    111223344332  2222


Q ss_pred             HHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761          281 IFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  346 (350)
Q Consensus       281 v~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~  346 (350)
                            ....-.+++++++.....++..+.|+++++...+++|-+++...+....++++|..+...
T Consensus        90 ------~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~  149 (314)
T KOG1444|consen   90 ------MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF  149 (314)
T ss_pred             ------HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence                  344446789999999999999999999999999999999999999999988888766543

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=87.58  E-value=1.3  Score=40.94  Aligned_cols=65  Identities=14%  Similarity=0.234  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q 018761          282 FGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNF  346 (350)
Q Consensus       282 ~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~  346 (350)
                      ++-..|-.+.+.++....|+--.++.-...+|+-+++..+++.+++..+|+|...+..|++++-.
T Consensus        94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~  158 (372)
T KOG3912|consen   94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS  158 (372)
T ss_pred             HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence            44555778888899999999999999999999999999999999999999999999999887654

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=86.03  E-value=2.7  Score=37.88  Aligned_cols=129  Identities=9%  Similarity=0.007  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc-cCC-----------hHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCC-HHHHHHH
Q 018761          210 WMLLAAQSMAVGTVMVRWVSK-YSD-----------PVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELT-SSDILAL  276 (350)
Q Consensus       210 lal~aa~~~A~~~v~~r~~~~-~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l  276 (350)
                      .+.+--+||=.|.+.+.|+.+ ++.           ...++++++..-.++.=++..+....       ..| ...|...
T Consensus        17 ca~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~-------~~D~t~~~~Ya   89 (337)
T KOG1580|consen   17 CAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKT-------EIDNTPTKMYA   89 (337)
T ss_pred             EecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccc-------cccCCcchHHH
Confidence            344445788888888876533 222           23444455555444443333333221       111 1223332


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcc
Q 018761          277 LYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFR  347 (350)
Q Consensus       277 l~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~  347 (350)
                      . .+ ....++...-+.|+|+++=-+.-+--.-.|+=.+++|.++.+...+|..+.-..+|++|+.+.-.+
T Consensus        90 A-cs-~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK  158 (337)
T KOG1580|consen   90 A-CS-ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYK  158 (337)
T ss_pred             H-HH-HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcc
Confidence            2 22 456778888899999998777778888899999999999999999999999999999999887765

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=82.42  E-value=4.1  Score=37.34  Aligned_cols=127  Identities=13%  Similarity=-0.072  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCHHHHHHHHHHHHHHHHH
Q 018761          207 GEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLMVISVLNHDPVYGESVKELTSSDILALLYTSIFGSAI  286 (350)
Q Consensus       207 G~llal~aa~~~A~~~v~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~gv~~t~l  286 (350)
                      |.+.+++|+++|+...+=.|+.. ..|.+..-.++.....+..+++....+.+.+         ..|   ..+|..-.+.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~-~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f---------~p~---amlgG~lW~~   67 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFD-TGDGFFFQWVMCSGIFLVGLVVNLILGFPPF---------YPW---AMLGGALWAT   67 (254)
T ss_pred             CchhHHHHHHHhcccceeeEecc-CCCcHHHHHHHHHHHHHHHHHHHHhcCCCcc---------eeH---HHhhhhhhhc
Confidence            45788999999999999999985 4577665555555555555555555544321         111   1112222333


Q ss_pred             HHHHHHHHhccCChhHHHHHHhh-HHHHHHHHHHH-HhCCCC-----CHHHHHHHHHHHHHHHHhhc
Q 018761          287 SYGVYFYSATKGSLTKLSSLTFL-TPMFASIFGFL-YLGETF-----SPLQLVGAAVTVVAIYLVNF  346 (350)
Q Consensus       287 ~~~l~~~al~~~~a~~~s~l~~l-~Pv~a~i~~~l-~lgE~~-----~~~~~vG~~lIl~gv~l~~~  346 (350)
                      |-.+-.-.+|.++.+..-.+-.. .-+.+-..+-+ +||+.+     .+..++|++++++|..+...
T Consensus        68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f  134 (254)
T PF07857_consen   68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF  134 (254)
T ss_pred             CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence            44445555566655544433322 33333333322 455432     35678999999998887654

The region concerned is approximately 280 residues long.

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=81.84  E-value=5.7  Score=30.97  Aligned_cols=46  Identities=11%  Similarity=0.110  Sum_probs=37.9

Q ss_pred             HHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCC
Q 018761          304 SSLTFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRGS  349 (350)
Q Consensus       304 s~l~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~~  349 (350)
                      +.+.-...+.+.++.+++-|.+|+.+.++|+++.++|+.++....|
T Consensus        62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR  107 (109)
T COG1742          62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR  107 (109)
T ss_pred             HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence            3445566788899999999999999999999999999877765543

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=81.49  E-value=3.4  Score=38.88  Aligned_cols=79  Identities=11%  Similarity=0.157  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHhhHH-HHHHHHHHHHhCCC--CCH----HHHHHHHHHHHHHH
Q 018761          270 SSDILALLYTSIFGSAISYGVYFYSATKGSLTKLSSLTFLTP-MFASIFGFLYLGET--FSP----LQLVGAAVTVVAIY  342 (350)
Q Consensus       270 ~~~~~~ll~~gv~~t~l~~~l~~~al~~~~a~~~s~l~~l~P-v~a~i~~~l~lgE~--~~~----~~~vG~~lIl~gv~  342 (350)
                      +..|..++.+ +++...-....++|+++.+++.+.++++..= ..+++-+.++++|.  .+.    ....|..+++.|++
T Consensus       210 ~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~  288 (300)
T PF05653_consen  210 PLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVF  288 (300)
T ss_pred             hHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhh
Confidence            4445444433 3445556677888999999999888777654 45555667778876  444    34567788999999


Q ss_pred             HhhccCC
Q 018761          343 LVNFRGS  349 (350)
Q Consensus       343 l~~~~~~  349 (350)
                      +....|+
T Consensus       289 lL~~~~~  295 (300)
T PF05653_consen  289 LLSSSKD  295 (300)
T ss_pred             eeeccCc
Confidence            9887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.97
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.89

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.97  E-value=1.1e-09  Score=89.64  Aligned_cols=71  Identities=8%  Similarity=0.165  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccCChhHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          278 YTSIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       278 ~~gv~~t~l~~~l~~~al~~~~a~~~s~l-~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      .+++++++++|.+|++++++++++++.++ .++.|++++++++++|||++++.+++|+++|++|++++.+.+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            36778899999999999999999999999 899999999999999999999999999999999999987643

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.89  E-value=4.4e-08  Score=77.15  Aligned_cols=70  Identities=9%  Similarity=0.173  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHhccCChhHHHHH-HhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC
Q 018761          279 TSIFGSAISYGVYFYSATKGSLTKLSSL-TFLTPMFASIFGFLYLGETFSPLQLVGAAVTVVAIYLVNFRG  348 (350)
Q Consensus       279 ~gv~~t~l~~~l~~~al~~~~a~~~s~l-~~l~Pv~a~i~~~l~lgE~~~~~~~vG~~lIl~gv~l~~~~~  348 (350)
                      .++++.++++.++.+++|+.+.+++.++ ..+.|+++++++++++||++++.+++|.++|++|+++....+
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            5667788899999999999999999998 899999999999999999999999999999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00