Citrus Sinensis ID: 018778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MQVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccHHHHcccccccccccccccccccccccccccccccccEcccccccccEEEcccccccccccccccccccccccccccHHHcccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHEHccc
Coil and Loop (DISEMBL)
mqvktfanhfvsspnSRLKLLSQSLTSCSKTFLISTTLQwhssllpsrlcvfapkdhqkrFITTCLsssqefasendisdtsvslsaeKEEEEKAVEVKTEGLADQSIWNQIKEIMKftgpatglwicgplmslidtavigqgsslelaalgpgtvlcdnMSYIFMFLSIATSNLVAtsltnrdkneVQHQISVLLFVGLACGFSMLIFTKFFGMQAlsaftgsknvhilpaaNKYVQIRGLAWPAVLTGWVAQsaslgmkdswgPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQkgynafaisiplpsELLAIFELAAPVFVMMMSKV
Flexible Loop (DISEMBL)
mqvktfanhfvsspnsrLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLsssqefasendisdtsvslsaekEEEEKavevktegladqsIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKV
Low Complexity Region (SEG)
MQVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSaekeeeekavevkTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKV
Disordered region (IsUnstruct)
*******************LLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCL************************************LADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMM****
Disordered Region (DISOPRED)
*********F*****************************************************************************************************IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKV
Disordered Region (DISEMBL)
********HFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSS*******************************EGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKV
Disordered Region (DISPRO)
*QVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSS************************************QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q8W4G3	559	MATE efflux family protei	yes	no	0.854	0.534	0.660	1e-115
Q945F0	543	Enhanced disease suscepti	no	no	0.708	0.456	0.697	1e-102
Q84K71	521	MATE efflux family protei	no	no	0.748	0.502	0.264	1e-13
Q9SFB0	526	MATE efflux family protei	no	no	0.528	0.351	0.276	1e-08
Q9SVE7	560	MATE efflux family protei	no	no	0.54	0.337	0.257	9e-07
Q9SYD6	515	MATE efflux family protei	no	no	0.502	0.341	0.271	2e-06

>sp|Q8W4G3|MATE4_ARATH MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1

 Score =  416 bits (1068), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/312 (66%), Positives = 244/312 (78%), Gaps = 13/312 (4%)

Query: 51  VFAPKDHQK--RFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVE----------V 98
           V  PK   K  RF+  C S++QE   + +  + S+S   + +    ++           V
Sbjct: 44  VSGPKSSLKLNRFLRNCASTNQELVVDGETGNGSIS-ELQGDAANGSISPVEVEAEVEEV 102

Query: 99  KTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLC 158
           K + LA QSIW Q+KEI+ FTGPA GLW+CGPLMSLIDTAVIGQGSSLELAALGP TV+C
Sbjct: 103 KVDDLATQSIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPATVIC 162

Query: 159 DNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQAL 218
           D + Y FMFLS+ATSNLVATSL  +DK+EVQHQIS+LLF+GLACG +M++ T+ FG  AL
Sbjct: 163 DYLCYTFMFLSVATSNLVATSLARQDKDEVQHQISILLFIGLACGVTMMVLTRLFGSWAL 222

Query: 219 SAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNG 278
           +AFTG KN  I+PAANKYVQIRGLAWPAVL GWVAQSASLGMKDSWGPLKAL VASA+NG
Sbjct: 223 TAFTGVKNADIVPAANKYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVASAING 282

Query: 279 IGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFEL 338
           +GD+VLC FLGYGIAGAAWATM SQV+AAYMM+  LN+KGY+AF+  +P PSELL IF L
Sbjct: 283 VGDVVLCTFLGYGIAGAAWATMVSQVVAAYMMMDALNKKGYSAFSFCVPSPSELLTIFGL 342

Query: 339 AAPVFVMMMSKV 350
           AAPVF+ MMSKV
Sbjct: 343 AAPVFITMMSKV 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q945F0|EDS5_ARATH Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/248 (69%), Positives = 209/248 (84%)

Query: 103 LADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMS 162
           L  QSIW Q+KEI+KFTGPA G+WICGPLMSLIDT VIGQGSS+ELAALGPGTVLCD+MS
Sbjct: 90  LVKQSIWEQMKEIVKFTGPAMGMWICGPLMSLIDTVVIGQGSSIELAALGPGTVLCDHMS 149

Query: 163 YIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT 222
           Y+FMFLS+ATSN+VATSL  +DK E QHQISVLLF+GL CG  ML+ T+ FG  A++AFT
Sbjct: 150 YVFMFLSVATSNMVATSLAKQDKKEAQHQISVLLFIGLVCGLMMLLLTRLFGPWAVTAFT 209

Query: 223 GSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDI 282
             KN+ I+PAANKY+QIRGLAWP +L G VAQSASLGMK+SWGPLKAL  A+ +NG+GD 
Sbjct: 210 RGKNIEIVPAANKYIQIRGLAWPFILVGLVAQSASLGMKNSWGPLKALAAATIINGLGDT 269

Query: 283 VLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPV 342
           +LC FLG GIAGAAWAT ASQ+++AYMM+ +LN++GYNA++ +IP P EL  I  LAAPV
Sbjct: 270 ILCLFLGQGIAGAAWATTASQIVSAYMMMDSLNKEGYNAYSFAIPSPQELWKISALAAPV 329

Query: 343 FVMMMSKV 350
           F+ + SK+
Sbjct: 330 FISIFSKI 337

Plays an essential function in the salicylic acid-dependent pathway of plant defense against pathogens. Might be part of the functional mechanism for the induction of salicylic acid biosynthesis. Might be a transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84K71|MATE2_ARATH MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 131/287 (45%), Gaps = 25/287 (8%)

Query: 52  FAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVEVKT-------EGLA 104
           F+P     RF     S  +    ++   D S ++S   +  EK     T       +   
Sbjct: 10  FSPHRSPSRFGNPNSSIRRTIVCKSSPRDESPAVSTSSQRPEKQQNPLTSQNKPDHDHKP 69

Query: 105 DQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYI 164
           D  I     EIM    PA       P+ SL+DTA +G   S ELAA+G    + + +S +
Sbjct: 70  DPGIGKIGMEIMSIALPAALALAADPITSLVDTAFVGHIGSAELAAVGVSVSVFNLVSKL 129

Query: 165 F--MFLSIATSNLVAT-SLTNRDKNE-------VQHQISVLLF----VGLACGFSMLIFT 210
           F    L++ TS +    ++  +D N+       V   +S  L     VG+A   ++ + +
Sbjct: 130 FNVPLLNVTTSFVAEEQAIAAKDDNDSIETSKKVLPSVSTSLVLAAGVGIAEAIALSLGS 189

Query: 211 KFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKAL 270
            F  +  + A      + I   A +++++R    P ++    AQ A  G KD+  PL A+
Sbjct: 190 DF--LMDVMAIPFDSPMRI--PAEQFLRLRAYGAPPIVVALAAQGAFRGFKDTTTPLYAV 245

Query: 271 VVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317
           V  + +N + D +L   LG+GI+GAA AT+ S+ + A++++  LN+ 
Sbjct: 246 VAGNVLNAVLDPILIFVLGFGISGAAAATVISEYLIAFILLWKLNEN 292

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 96/242 (39%), Gaps = 57/242 (23%)

Query: 133 SLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMF--LSIATS----------------- 173
           SLIDTA +G+  +++LAA+G    + +  S I +F  +S+ TS                 
Sbjct: 55  SLIDTAFVGRLGAVQLAAVGVSIAIFNQASRITIFPLVSLTTSFVAEEDTMEKMKEEANK 114

Query: 174 -NLV--------------ATSLTNRDKNEVQH-----------------------QISVL 195
            NLV               +S T+ D N+ Q                          S  
Sbjct: 115 ANLVHAETILVQDSLEKGISSPTSNDTNQPQQPPAPDTKSNSGNKSNKKEKRTIRTASTA 174

Query: 196 LFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQS 255
           + +GL  G    IF  F     L       N  +L  A+KY+ IR L  PA+L     Q 
Sbjct: 175 MILGLILGLVQAIFLIFSSKLLLGVMGVKPNSPMLSPAHKYLSIRALGAPALLLSLAMQG 234

Query: 256 ASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLN 315
              G KD+  PL A VVA  +N + D +    L  GI GAA A + SQ     ++ + L 
Sbjct: 235 IFRGFKDTKTPLFATVVADVINIVLDPIFIFVLRLGIIGAAIAHVISQYFMTLILFVFLA 294

Query: 316 QK 317
           +K
Sbjct: 295 KK 296

Citrate transporter responsible for loading citrate into xylem tissues, which helps facilitate iron transport to shoots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVE7|MATE3_ARATH MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 52/241 (21%)

Query: 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIF--MFLSI 170
           +E++  + PA       PL  L++TA IG+  S+EL + G    + + +S +F    LS+
Sbjct: 107 RELVMLSLPAIAGQAIDPLTLLMETAYIGRLGSVELGSAGVSMAIFNTISKLFNIPLLSV 166

Query: 171 ATS-------NLVATSLTNRD-KNEVQHQ------------------ISVLLFVGLACGF 204
           ATS        + A  L + D ++++  Q                  I + +F  LA   
Sbjct: 167 ATSFVAEDIAKIAAQDLASEDSQSDIPSQGLPERKQLSSVSTALVLAIGIGIFEALALSL 226

Query: 205 SMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSW 264
           +   F +  G+Q++S         +   A +++ +R L  PA +     Q    G KD+ 
Sbjct: 227 ASGPFLRLMGIQSMS--------EMFIPARQFLVLRALGAPAYVVSLALQGIFRGFKDTK 278

Query: 265 GPLKALVVASAVNGIGDIVLCRFL--------GYGIAGAAWATMASQVIAAYMMIINLNQ 316
            P+  L       GIG+  L  FL          G+AGAA +++ SQ   A +M+I LN+
Sbjct: 279 TPVYCL-------GIGNF-LAVFLFPLFIYKFRMGVAGAAISSVISQYTVAILMLILLNK 330

Query: 317 K 317
           +
Sbjct: 331 R 331

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYD6|MATE1_ARATH MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 93/236 (39%), Gaps = 60/236 (25%)

Query: 130 PLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMF--LSIATSNLVATSL------T 181
           P+ SL+DTA IGQ   +ELAA+G    L + +S I +F  +SI TS +           T
Sbjct: 51  PIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSITTSFVAEEDACSSQQDT 110

Query: 182 NRDKNEV------------------QHQISV----------------------------L 195
            RD  E                   +H+ S+                             
Sbjct: 111 VRDHKECIEIGINNPTEETIELIPEKHKDSLSDEFKTSSSIFSISKPPAKKRNIPSASSA 170

Query: 196 LFVGLACGFSMLIFTKFFGMQALSAFTGSK-NVHILPAANKYVQIRGLAWPAVLTGWVAQ 254
           L +G   G    +F      + L +F G K +  ++  + +Y+ +R L  PAVL    AQ
Sbjct: 171 LIIGGVLGLFQAVFL-ISAAKPLLSFMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQ 229

Query: 255 SASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMM 310
               G KD+  PL A V+    N I D +       G+ GAA A     VI+ Y+M
Sbjct: 230 GVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRLGVTGAATA----HVISQYLM 281

Citrate transporter critical for aluminum tolerance. Responsible for citrate exudation into the rhizosphere to protect roots from aluminum toxicity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
224103339	553	predicted protein [Populus trichocarpa]	0.985	0.623	0.647	1e-123
255543827	567	DNA-damage-inducible protein f, putative	0.937	0.578	0.666	1e-121
255543829	552	DNA-damage-inducible protein f, putative	0.982	0.623	0.639	1e-120
297821327	547	hypothetical protein ARALYDRAFT_480999 [	0.902	0.577	0.661	1e-118
297744747	621	unnamed protein product [Vitis vinifera]	0.971	0.547	0.625	1e-115
225427736	567	PREDICTED: MATE efflux family protein 4,	0.965	0.596	0.628	1e-115
225427734	535	PREDICTED: MATE efflux family protein 4,	0.842	0.551	0.711	1e-114
240254500	559	MATE efflux family protein [Arabidopsis	0.854	0.534	0.660	1e-113
20197910	555	expressed protein [Arabidopsis thaliana]	0.854	0.538	0.660	1e-113
357473485	550	Enhanced disease susceptibility [Medicag	0.937	0.596	0.630	1e-113

>gi|224103339|ref|XP_002313018.1| predicted protein [Populus trichocarpa] gi|222849426|gb|EEE86973.1| predicted protein [Populus trichocarpa]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/352 (64%), Positives = 269/352 (76%), Gaps = 7/352 (1%)

Query: 1   MQVKTF--ANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQ 58
           MQ +T    +H + + N   + LS+SL S  K  L   +   HSSLL     V  P    
Sbjct: 1   MQARTLLHCSHTLQNHNHP-RFLSRSLISFKKRPLSLVSPNSHSSLLHPIPLVIKPS--- 56

Query: 59  KRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQIKEIMKF 118
            R +  C S + E A+ +   + S + S  +  EE  +EV  EGL +QS+W Q+KEI+ F
Sbjct: 57  -RLLAPCNSPAHESANNSVTENESSTDSISEFIEETGIEVNREGLENQSMWEQMKEIVMF 115

Query: 119 TGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVAT 178
           TGPATGLWICGPLMSLIDTAVIGQGSS+ELAALGPGTVLCD MSYIFMFLSIATSN+VAT
Sbjct: 116 TGPATGLWICGPLMSLIDTAVIGQGSSIELAALGPGTVLCDGMSYIFMFLSIATSNMVAT 175

Query: 179 SLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQ 238
           SL  +DKNEVQHQ+S+LLF+GL CG  M +FTKFFG  AL AF GS N+ I+PAAN YVQ
Sbjct: 176 SLAKQDKNEVQHQLSMLLFIGLTCGSLMFLFTKFFGPSALKAFAGSNNLDIIPAANTYVQ 235

Query: 239 IRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWA 298
           IRGLAWPA+L GWVAQSASLGMKDSWGPLKAL VASAVNGIGDIVLCRFLGYGIAGAAWA
Sbjct: 236 IRGLAWPAILIGWVAQSASLGMKDSWGPLKALAVASAVNGIGDIVLCRFLGYGIAGAAWA 295

Query: 299 TMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKV 350
           TMASQ++AA+MMI +LN+KGYNA+AIS+P   +L+ +F LAAP F+MM+SKV
Sbjct: 296 TMASQIVAAFMMIDSLNKKGYNAYAISVPSTDDLMIVFRLAAPAFIMMISKV 347

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543827|ref|XP_002512976.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223547987|gb|EEF49479.1| DNA-damage-inducible protein f, putative [Ricinus communis]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/345 (66%), Positives = 269/345 (77%), Gaps = 17/345 (4%)

Query: 19  KLLSQSLTSCSKTFLISTTL---QWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFAS- 74
           + L QSL    K  L S +L    +H+S LP  L +F   +   R +T C+S S+EF S 
Sbjct: 21  RFLPQSLPHLKKPSL-SVSLAPPNFHNSFLPPDLVIF---NSSSRLVTPCISPSKEFVSD 76

Query: 75  ---ENDISDTSVSLSAEKEEEEKAVEVKT------EGLADQSIWNQIKEIMKFTGPATGL 125
              EN+ S  S  L  E+ EE++  E +T      +GL  QSIWNQIKEI+ FT PATGL
Sbjct: 77  SVSENETSVASNYLLVEEGEEKEEDEEETRMVGSRQGLESQSIWNQIKEIVMFTAPATGL 136

Query: 126 WICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDK 185
           WI GPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSY+FMFLSI+TSNLVATSL  +DK
Sbjct: 137 WITGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYVFMFLSISTSNLVATSLAKQDK 196

Query: 186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWP 245
           NEVQHQ+SVLLF+ L CGF M++FTKF G   L+AFTGS N+H++P AN YVQIRGLAWP
Sbjct: 197 NEVQHQLSVLLFIALTCGFLMILFTKFLGTSVLTAFTGSSNLHLVPVANTYVQIRGLAWP 256

Query: 246 AVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVI 305
           A+L GWVAQSASLGMKDSWGPLKAL VASA+NGIGDIVLCRFL YG+AGAAWATM SQV+
Sbjct: 257 AILIGWVAQSASLGMKDSWGPLKALAVASAINGIGDIVLCRFLDYGVAGAAWATMVSQVV 316

Query: 306 AAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKV 350
           AAYMMI +LN+KGYNA +I +P PS+L+ IF +AAPVFVMM+SKV
Sbjct: 317 AAYMMIDSLNKKGYNACSIKVPSPSDLVTIFGIAAPVFVMMISKV 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543829|ref|XP_002512977.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223547988|gb|EEF49480.1| DNA-damage-inducible protein f, putative [Ricinus communis]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/352 (63%), Positives = 270/352 (76%), Gaps = 8/352 (2%)

Query: 1   MQVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKR 60
           M +KT  +H  SS  S      +    C  TF     L      LPS L + A K  +  
Sbjct: 1   MLIKTLNHHSFSSLISLQNPNFKKHNHCLITFNKPPPLH-----LPS-LHLSALKYQRNG 54

Query: 61  FITTCLSSSQE--FASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQIKEIMKF 118
            I+ C+SSS++  + S+N+    S +     + +E+ VE++ +GL +QSIW Q+KEI+ F
Sbjct: 55  LISNCISSSKDVVYDSDNNQGIESGNDGNIVQFQEQEVEIERDGLENQSIWKQMKEIVMF 114

Query: 119 TGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVAT 178
           TGPATGLW+CGPLMSLIDTAVIGQGSS+ELAALGPGTV+CD MSY+FMFLS+ATSNLVAT
Sbjct: 115 TGPATGLWLCGPLMSLIDTAVIGQGSSIELAALGPGTVVCDYMSYVFMFLSVATSNLVAT 174

Query: 179 SLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQ 238
           SL  R+KNEVQHQIS+LLFVGLACG  M +FT+FFG  AL+AFTG K+VHI+PAAN YVQ
Sbjct: 175 SLARRNKNEVQHQISILLFVGLACGVFMFLFTRFFGSWALTAFTGPKHVHIVPAANTYVQ 234

Query: 239 IRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWA 298
           IRGLAWPAV+ GWVAQSASLGMKDSWGPLKAL V+S VNG+GD+VLC F+GYGIAGAAWA
Sbjct: 235 IRGLAWPAVIVGWVAQSASLGMKDSWGPLKALAVSSIVNGVGDVVLCSFMGYGIAGAAWA 294

Query: 299 TMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKV 350
           TM SQVIAAYMMI  LN+KGYNAFA++IP   ELL+I  +AAPVF+ MMSKV
Sbjct: 295 TMVSQVIAAYMMIEALNKKGYNAFAVTIPTLDELLSIVGIAAPVFITMMSKV 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821327|ref|XP_002878546.1| hypothetical protein ARALYDRAFT_480999 [Arabidopsis lyrata subsp. lyrata] gi|297324385|gb|EFH54805.1| hypothetical protein ARALYDRAFT_480999 [Arabidopsis lyrata subsp. lyrata]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/316 (66%), Positives = 247/316 (78%)

Query: 35  STTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEK 94
           S TL+  +  LPS            RF+  C S +QE  ++ +  +  +S  A      +
Sbjct: 27  SITLRSWNPPLPSFRSSSVSGAKLNRFLRNCASPNQELVADEETGNGLISEEANGSISPE 86

Query: 95  AVEVKTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPG 154
             EVK + LA+Q+IW Q+KEI+ FTGPA GLW+CGPLMSLIDTAVIGQGSSLELAALGP 
Sbjct: 87  VEEVKVDDLANQNIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPA 146

Query: 155 TVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFG 214
           TV+CD + Y FMFLS+ATSNLVATSL  RDK+EVQHQIS+LLF+GLACG +M++FT+ FG
Sbjct: 147 TVICDYLCYTFMFLSVATSNLVATSLARRDKDEVQHQISILLFIGLACGVTMMVFTRLFG 206

Query: 215 MQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVAS 274
             AL+AFTG KN  I+PAAN YVQIRGLAWPAVL GWVAQSASLGMKDSWGPLKAL VAS
Sbjct: 207 SWALTAFTGVKNAEIVPAANTYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVAS 266

Query: 275 AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLA 334
           A+NG+GD+VLC FLGYGIAGAAWATM SQV+AAYMM+  LN+KGY+AF+  +P PSELL 
Sbjct: 267 AINGVGDVVLCTFLGYGIAGAAWATMVSQVVAAYMMMDALNKKGYSAFSFCVPSPSELLT 326

Query: 335 IFELAAPVFVMMMSKV 350
           IF LAAPVF+ MMSKV
Sbjct: 327 IFGLAAPVFITMMSKV 342

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744747|emb|CBI38009.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/363 (62%), Positives = 263/363 (72%), Gaps = 23/363 (6%)

Query: 5   TFANHF-VSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVF-APKDHQKRFI 62
           + A+HF + +P+ R        +  S +F  S   ++ +S  PS LC+  A  D + R  
Sbjct: 61  SHASHFHLQNPDLR------RFSPPSTSFSNSPNTRFRNSPAPSLLCISPAANDRRHRLT 114

Query: 63  TTCLSSSQEF-------ASENDISDTSVS--------LSAEKEEEEKAVEVKTEGLADQS 107
             C SSSQE        ASEN  +   VS           E+  E      + E  ADQS
Sbjct: 115 ALCKSSSQEVLGETQDVASENGGNGALVSSFEEEDVGEGEEEAVEVVVGSKRKEFAADQS 174

Query: 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMF 167
           I NQ+K+I+ F+GPAT LWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSY+FMF
Sbjct: 175 ILNQMKKIVMFSGPATALWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYVFMF 234

Query: 168 LSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNV 227
           LSIATSN+VAT+L  +DK EVQHQIS+LLF+GLACG  ML F KF G  AL+AFTG KN 
Sbjct: 235 LSIATSNMVATALARKDKKEVQHQISILLFIGLACGVLMLFFMKFLGAWALTAFTGPKNA 294

Query: 228 HILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRF 287
           H++PAAN YVQIRGLAWPAVL GWVAQSASLGMKDSWGPLKAL VASAVN  G +VLC  
Sbjct: 295 HLVPAANTYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVASAVNVTGHVVLCTL 354

Query: 288 LGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMM 347
           LGYGIAGAAWATM SQVIAAYMMI  LN+KG+ A++IS+P PSELL IF+LAAPVFV M+
Sbjct: 355 LGYGIAGAAWATMVSQVIAAYMMIEALNKKGFKAYSISVPSPSELLQIFKLAAPVFVTMV 414

Query: 348 SKV 350
           SKV
Sbjct: 415 SKV 417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427736|ref|XP_002274813.1| PREDICTED: MATE efflux family protein 4, chloroplastic [Vitis vinifera]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/361 (62%), Positives = 262/361 (72%), Gaps = 23/361 (6%)

Query: 7   ANHF-VSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVF-APKDHQKRFITT 64
           A+HF + +P+ R        +  S +F  S   ++ +S  PS LC+  A  D + R    
Sbjct: 9   ASHFHLQNPDLR------RFSPPSTSFSNSPNTRFRNSPAPSLLCISPAANDRRHRLTAL 62

Query: 65  CLSSSQEF-------ASENDISDTSVS--------LSAEKEEEEKAVEVKTEGLADQSIW 109
           C SSSQE        ASEN  +   VS           E+  E      + E  ADQSI 
Sbjct: 63  CKSSSQEVLGETQDVASENGGNGALVSSFEEEDVGEGEEEAVEVVVGSKRKEFAADQSIL 122

Query: 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLS 169
           NQ+K+I+ F+GPAT LWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSY+FMFLS
Sbjct: 123 NQMKKIVMFSGPATALWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYVFMFLS 182

Query: 170 IATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHI 229
           IATSN+VAT+L  +DK EVQHQIS+LLF+GLACG  ML F KF G  AL+AFTG KN H+
Sbjct: 183 IATSNMVATALARKDKKEVQHQISILLFIGLACGVLMLFFMKFLGAWALTAFTGPKNAHL 242

Query: 230 LPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLG 289
           +PAAN YVQIRGLAWPAVL GWVAQSASLGMKDSWGPLKAL VASAVN  G +VLC  LG
Sbjct: 243 VPAANTYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVASAVNVTGHVVLCTLLG 302

Query: 290 YGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSK 349
           YGIAGAAWATM SQVIAAYMMI  LN+KG+ A++IS+P PSELL IF+LAAPVFV M+SK
Sbjct: 303 YGIAGAAWATMVSQVIAAYMMIEALNKKGFKAYSISVPSPSELLQIFKLAAPVFVTMVSK 362

Query: 350 V 350
           V
Sbjct: 363 V 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427734|ref|XP_002274783.1| PREDICTED: MATE efflux family protein 4, chloroplastic-like [Vitis vinifera]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/302 (71%), Positives = 237/302 (78%), Gaps = 7/302 (2%)

Query: 56  DHQKRFITTCLSSSQ------EFASENDISDTSVSL-SAEKEEEEKAVEVKTEGLADQSI 108
           +   RF   C+ SS+      EF + N+ +  SVSL   ++ E E     K E   +QSI
Sbjct: 2   NRGSRFAIGCIGSSEVVGDGVEFVAGNEENVGSVSLLEEDEVEVEVVGVGKQEFGVNQSI 61

Query: 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFL 168
           W Q+KEIM FTGPATGLWICGPLMSLIDTAVIGQGSS+ELAALGPGTV+CD MSY+FMFL
Sbjct: 62  WEQMKEIMMFTGPATGLWICGPLMSLIDTAVIGQGSSVELAALGPGTVVCDYMSYVFMFL 121

Query: 169 SIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVH 228
           SIATSN+VATSL  +DKNEVQHQIS LLFVG  CG  ML+FTKF G  AL+ FTG KN H
Sbjct: 122 SIATSNMVATSLARQDKNEVQHQISTLLFVGFTCGVLMLLFTKFLGAWALTVFTGPKNAH 181

Query: 229 ILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFL 288
           I+PAAN YVQIRGLAWPAVL GWVAQSASLGMKDSWGPLKAL VASA+NGIGDIVLC FL
Sbjct: 182 IVPAANVYVQIRGLAWPAVLVGWVAQSASLGMKDSWGPLKALAVASAINGIGDIVLCSFL 241

Query: 289 GYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMS 348
           GYGIAGAAWATM SQVIA YMMI  LN+KGYNAFA S+P   E + I  LAAPVFV MMS
Sbjct: 242 GYGIAGAAWATMVSQVIAGYMMIEALNKKGYNAFAFSVPSLDEFVQILGLAAPVFVTMMS 301

Query: 349 KV 350
           KV
Sbjct: 302 KV 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254500|ref|NP_565509.4| MATE efflux family protein [Arabidopsis thaliana] gi|75162471|sp|Q8W4G3.1|MATE4_ARATH RecName: Full=MATE efflux family protein 4, chloroplastic; AltName: Full=Protein DTX46; Flags: Precursor gi|17065002|gb|AAL32655.1| Unknown protein [Arabidopsis thaliana] gi|22136238|gb|AAM91197.1| unknown protein [Arabidopsis thaliana] gi|330252070|gb|AEC07164.1| MATE efflux family protein [Arabidopsis thaliana]

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/312 (66%), Positives = 244/312 (78%), Gaps = 13/312 (4%)

Query: 51  VFAPKDHQK--RFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVE----------V 98
           V  PK   K  RF+  C S++QE   + +  + S+S   + +    ++           V
Sbjct: 44  VSGPKSSLKLNRFLRNCASTNQELVVDGETGNGSIS-ELQGDAANGSISPVEVEAEVEEV 102

Query: 99  KTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLC 158
           K + LA QSIW Q+KEI+ FTGPA GLW+CGPLMSLIDTAVIGQGSSLELAALGP TV+C
Sbjct: 103 KVDDLATQSIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPATVIC 162

Query: 159 DNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQAL 218
           D + Y FMFLS+ATSNLVATSL  +DK+EVQHQIS+LLF+GLACG +M++ T+ FG  AL
Sbjct: 163 DYLCYTFMFLSVATSNLVATSLARQDKDEVQHQISILLFIGLACGVTMMVLTRLFGSWAL 222

Query: 219 SAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNG 278
           +AFTG KN  I+PAANKYVQIRGLAWPAVL GWVAQSASLGMKDSWGPLKAL VASA+NG
Sbjct: 223 TAFTGVKNADIVPAANKYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVASAING 282

Query: 279 IGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFEL 338
           +GD+VLC FLGYGIAGAAWATM SQV+AAYMM+  LN+KGY+AF+  +P PSELL IF L
Sbjct: 283 VGDVVLCTFLGYGIAGAAWATMVSQVVAAYMMMDALNKKGYSAFSFCVPSPSELLTIFGL 342

Query: 339 AAPVFVMMMSKV 350
           AAPVF+ MMSKV
Sbjct: 343 AAPVFITMMSKV 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20197910|gb|AAD23682.2| expressed protein [Arabidopsis thaliana]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/312 (66%), Positives = 244/312 (78%), Gaps = 13/312 (4%)

Query: 51  VFAPKDHQK--RFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVE----------V 98
           V  PK   K  RF+  C S++QE   + +  + S+S   + +    ++           V
Sbjct: 40  VSGPKSSLKLNRFLRNCASTNQELVVDGETGNGSIS-ELQGDAANGSISPVEVEAEVEEV 98

Query: 99  KTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLC 158
           K + LA QSIW Q+KEI+ FTGPA GLW+CGPLMSLIDTAVIGQGSSLELAALGP TV+C
Sbjct: 99  KVDDLATQSIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPATVIC 158

Query: 159 DNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQAL 218
           D + Y FMFLS+ATSNLVATSL  +DK+EVQHQIS+LLF+GLACG +M++ T+ FG  AL
Sbjct: 159 DYLCYTFMFLSVATSNLVATSLARQDKDEVQHQISILLFIGLACGVTMMVLTRLFGSWAL 218

Query: 219 SAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNG 278
           +AFTG KN  I+PAANKYVQIRGLAWPAVL GWVAQSASLGMKDSWGPLKAL VASA+NG
Sbjct: 219 TAFTGVKNADIVPAANKYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVASAING 278

Query: 279 IGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFEL 338
           +GD+VLC FLGYGIAGAAWATM SQV+AAYMM+  LN+KGY+AF+  +P PSELL IF L
Sbjct: 279 VGDVVLCTFLGYGIAGAAWATMVSQVVAAYMMMDALNKKGYSAFSFCVPSPSELLTIFGL 338

Query: 339 AAPVFVMMMSKV 350
           AAPVF+ MMSKV
Sbjct: 339 AAPVFITMMSKV 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473485|ref|XP_003607027.1| Enhanced disease susceptibility [Medicago truncatula] gi|355508082|gb|AES89224.1| Enhanced disease susceptibility [Medicago truncatula]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/344 (63%), Positives = 247/344 (71%), Gaps = 16/344 (4%)

Query: 8   NHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLS 67
           +HF    N  LK LS          L  T    H  L  S L + A   H  RF+T    
Sbjct: 17  HHFPPRQNPNLKSLS----------LFPTISHPHLPLHFSSLSISA--LHPTRFVTARAI 64

Query: 68  SSQEF-ASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQIKEIMKFTGPATGLW 126
             +E    E  IS+ S     E E   + VE   + LA+Q IW Q+KEI+KFT PATGLW
Sbjct: 65  QPRELTGDEGRISEPSEEAKIENEAATQGVE---KELANQGIWIQLKEIVKFTAPATGLW 121

Query: 127 ICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186
           ICGPLMSLIDTAVIGQGSS+ELAALGP TV+CD MSY+FMFLS+ATSN+VAT+L  +D  
Sbjct: 122 ICGPLMSLIDTAVIGQGSSIELAALGPATVVCDYMSYVFMFLSVATSNMVATALAKQDTE 181

Query: 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPA 246
           EVQH ISVLLFVGLACGF ML+FT  FG   L+AFTG KN H++PAAN YVQIRGLAWPA
Sbjct: 182 EVQHHISVLLFVGLACGFMMLLFTWLFGAATLTAFTGIKNAHVVPAANTYVQIRGLAWPA 241

Query: 247 VLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIA 306
           +L GWVAQSASLGMKDSWGPLKAL  AS +NG+GDIVLC +LGYGIAGAAWATMASQV+A
Sbjct: 242 LLVGWVAQSASLGMKDSWGPLKALAAASVINGVGDIVLCTYLGYGIAGAAWATMASQVVA 301

Query: 307 AYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKV 350
           AYMM+  LN KGYNAFA+SIP   E + I  LAAPVF+ MMSKV
Sbjct: 302 AYMMMRTLNMKGYNAFALSIPSGREFITILGLAAPVFMTMMSKV 345

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2050140	559	AT2G21340 [Arabidopsis thalian	0.911	0.570	0.638	1.7e-105
TAIR|locus:2120267	543	EDS5 "AT4G39030" [Arabidopsis	0.708	0.456	0.697	2.3e-94
TAIR|locus:2057135	521	AT2G38330 "AT2G38330" [Arabido	0.565	0.380	0.293	7.8e-14
TAIR|locus:2077477	526	FRD3 "FERRIC REDUCTASE DEFECTI	0.388	0.258	0.326	7.5e-13
TAIR|locus:2008236	515	AT1G51340 [Arabidopsis thalian	0.402	0.273	0.270	3.6e-10
UNIPROTKB|P28303	459	dinF "DinF MATE Transporter" [	0.502	0.383	0.297	9.2e-09
UNIPROTKB|Q8E8P4	455	dinF "DNA damage-inducible mul	0.511	0.393	0.265	7.3e-08
TIGR_CMR|SO_4617	455	SO_4617 "DNA-damage-inducible	0.511	0.393	0.265	7.3e-08
UNIPROTKB|Q5LPD9	441	dinF "DNA-damage-inducible pro	0.522	0.414	0.257	1.5e-07
TIGR_CMR|SPO_2909	441	SPO_2909 "DNA-damage-inducible	0.522	0.414	0.257	1.5e-07

TAIR|locus:2050140 AT2G21340 [Arabidopsis thaliana (taxid:3702)]

 Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
 Identities = 212/332 (63%), Positives = 247/332 (74%)

Query:    32 FLISTTLQ-WHSSLLPSRL-CVFAPKDHQK--RFITTCLSSSQEFASENDISDTSVSLSX 87
             F  S TL+ W+ S    R   V  PK   K  RF+  C S++QE   + +  + S+S   
Sbjct:    23 FPSSLTLRSWNPSFPSFRSSAVSGPKSSLKLNRFLRNCASTNQELVVDGETGNGSISELQ 82

Query:    88 XXXXXXXXXXXXTEG---------LADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTA 138
                          E          LA QSIW Q+KEI+ FTGPA GLW+CGPLMSLIDTA
Sbjct:    83 GDAANGSISPVEVEAEVEEVKVDDLATQSIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTA 142

Query:   139 VIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFV 198
             VIGQGSSLELAALGP TV+CD + Y FMFLS+ATSNLVATSL  +DK+EVQHQIS+LLF+
Sbjct:   143 VIGQGSSLELAALGPATVICDYLCYTFMFLSVATSNLVATSLARQDKDEVQHQISILLFI 202

Query:   199 GLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASL 258
             GLACG +M++ T+ FG  AL+AFTG KN  I+PAANKYVQIRGLAWPAVL GWVAQSASL
Sbjct:   203 GLACGVTMMVLTRLFGSWALTAFTGVKNADIVPAANKYVQIRGLAWPAVLIGWVAQSASL 262

Query:   259 GMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG 318
             GMKDSWGPLKAL VASA+NG+GD+VLC FLGYGIAGAAWATM SQV+AAYMM+  LN+KG
Sbjct:   263 GMKDSWGPLKALAVASAINGVGDVVLCTFLGYGIAGAAWATMVSQVVAAYMMMDALNKKG 322

Query:   319 YNAFAISIPLPSELLAIFELAAPVFVMMMSKV 350
             Y+AF+  +P PSELL IF LAAPVF+ MMSKV
Sbjct:   323 YSAFSFCVPSPSELLTIFGLAAPVFITMMSKV 354

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2120267 EDS5 "AT4G39030" [Arabidopsis thaliana (taxid:3702)]

 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 173/248 (69%), Positives = 209/248 (84%)

Query:   103 LADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMS 162
             L  QSIW Q+KEI+KFTGPA G+WICGPLMSLIDT VIGQGSS+ELAALGPGTVLCD+MS
Sbjct:    90 LVKQSIWEQMKEIVKFTGPAMGMWICGPLMSLIDTVVIGQGSSIELAALGPGTVLCDHMS 149

Query:   163 YIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT 222
             Y+FMFLS+ATSN+VATSL  +DK E QHQISVLLF+GL CG  ML+ T+ FG  A++AFT
Sbjct:   150 YVFMFLSVATSNMVATSLAKQDKKEAQHQISVLLFIGLVCGLMMLLLTRLFGPWAVTAFT 209

Query:   223 GSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDI 282
               KN+ I+PAANKY+QIRGLAWP +L G VAQSASLGMK+SWGPLKAL  A+ +NG+GD 
Sbjct:   210 RGKNIEIVPAANKYIQIRGLAWPFILVGLVAQSASLGMKNSWGPLKALAAATIINGLGDT 269

Query:   283 VLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPV 342
             +LC FLG GIAGAAWAT ASQ+++AYMM+ +LN++GYNA++ +IP P EL  I  LAAPV
Sbjct:   270 ILCLFLGQGIAGAAWATTASQIVSAYMMMDSLNKEGYNAYSFAIPSPQELWKISALAAPV 329

Query:   343 FVMMMSKV 350
             F+ + SK+
Sbjct:   330 FISIFSKI 337

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA;ISS

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA;IMP

GO:0006952 "defense response" evidence=TAS

GO:0009624 "response to nematode" evidence=IEP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=RCA;IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006520 "cellular amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2057135 AT2G38330 "AT2G38330" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 7.8e-14, P = 7.8e-14
 Identities = 64/218 (29%), Positives = 112/218 (51%)

Query:   114 EIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFM--FLSIA 171
             EIM    PA       P+ SL+DTA +G   S ELAA+G    + + +S +F    L++ 
Sbjct:    79 EIMSIALPAALALAADPITSLVDTAFVGHIGSAELAAVGVSVSVFNLVSKLFNVPLLNVT 138

Query:   172 TSNLVAT-SLTNRDKNE-VQHQISVLLFVGLACGFSMLIFTKFFGM-QALSAFTGSK--- 225
             TS +    ++  +D N+ ++    VL  V  +     L+     G+ +A++   GS    
Sbjct:   139 TSFVAEEQAIAAKDDNDSIETSKKVLPSVSTS-----LVLAAGVGIAEAIALSLGSDFLM 193

Query:   226 NVHILP-------AANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNG 278
             +V  +P        A +++++R    P ++    AQ A  G KD+  PL A+V  + +N 
Sbjct:   194 DVMAIPFDSPMRIPAEQFLRLRAYGAPPIVVALAAQGAFRGFKDTTTPLYAVVAGNVLNA 253

Query:   279 IGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQ 316
             + D +L   LG+GI+GAA AT+ S+ + A++++  LN+
Sbjct:   254 VLDPILIFVLGFGISGAAAATVISEYLIAFILLWKLNE 291

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2077477 FRD3 "FERRIC REDUCTASE DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
 Identities = 45/138 (32%), Positives = 64/138 (46%)

Query:   181 TNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK-NVHILPAANKYVQI 239
             +N+ +       S  + +GL  G    IF   F  + L    G K N  +L  A+KY+ I
Sbjct:   160 SNKKEKRTIRTASTAMILGLILGLVQAIFL-IFSSKLLLGVMGVKPNSPMLSPAHKYLSI 218

Query:   240 RGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWAT 299
             R L  PA+L     Q    G KD+  PL A VVA  +N + D +    L  GI GAA A 
Sbjct:   219 RALGAPALLLSLAMQGIFRGFKDTKTPLFATVVADVINIVLDPIFIFVLRLGIIGAAIAH 278

Query:   300 MASQVIAAYMMIINLNQK 317
             + SQ     ++ + L +K
Sbjct:   279 VISQYFMTLILFVFLAKK 296

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0006879 "cellular iron ion homeostasis" evidence=IMP

GO:0015137 "citrate transmembrane transporter activity" evidence=IDA

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2008236 AT1G51340 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
 Identities = 39/144 (27%), Positives = 65/144 (45%)

Query:   172 TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVH-IL 230
             +S++ + S     K  +    S L+ +G   G    +F      + L +F G K+   ++
Sbjct:   148 SSSIFSISKPPAKKRNIPSASSALI-IGGVLGLFQAVFL-ISAAKPLLSFMGVKHDSPMM 205

Query:   231 PAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGY 290
               + +Y+ +R L  PAVL    AQ    G KD+  PL A V+    N I D +       
Sbjct:   206 RPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRL 265

Query:   291 GIAGAAWATMASQVIAAYMMIINL 314
             G+ GAA A + SQ +   +++  L
Sbjct:   266 GVTGAATAHVISQYLMCGILLWKL 289

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

UNIPROTKB|P28303 dinF "DinF MATE Transporter" [Escherichia coli K-12 (taxid:83333)]

 Score = 159 (61.0 bits), Expect = 9.2e-09, P = 9.2e-09
 Identities = 55/185 (29%), Positives = 91/185 (49%)

Query:   130 PLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188
             PL+ L+DTAVIG   S + L  +  G      +  + +FL ++T+ L A +   ++   +
Sbjct:    44 PLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAYGAKNPQAL 103

Query:   189 QHQISVLLFVGLACGFSM-LIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAV 247
                +   L + L  G  + L+ T    + AL    GS+ V  L  A ++++IR L+ PA 
Sbjct:   104 ARTLVQPLLLALGAGALIALLRTPIIDL-ALHIVGGSEAV--LEQARRFLEIRWLSAPAS 160

Query:   248 LTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAA 307
             L   V     LG++ +  P+  LVV + +N + D+ L   L   + GAA AT    VIA 
Sbjct:   161 LANLVLLGWLLGVQYARAPVILLVVGNILNIVLDVWLVMGLHMNVQGAALAT----VIAE 216

Query:   308 YMMII 312
             Y  ++
Sbjct:   217 YATLL 221

GO:0015297 "antiporter activity" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q8E8P4 dinF "DNA damage-inducible multidrug and toxin efflux protein DinF" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 151 (58.2 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 50/188 (26%), Positives = 91/188 (48%)

Query:   130 PLMSLIDTAVIGQGS-SLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188
             PL+ L+DTAVIG  S +  L  +  G+ +   + ++  FL +AT+ LVA +      N++
Sbjct:    36 PLLGLVDTAVIGHLSDAYYLGGVALGSTIITLIIWLLGFLRMATTGLVAQAY---GANDI 92

Query:   189 QHQISVLLFVG-LACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAV 247
               Q+ +L+    LA G  + +      + +L+      +V +     +Y QIR  + P  
Sbjct:    93 NAQLKLLVQGAMLATGLGIAMILLQVPLLSLALSFSEASVEVERYCREYFQIRIWSTPFA 152

Query:   248 LTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQV--- 304
             L   V     LG +     +  L+ A+  N I D++     G+G+ GAA A++ + +   
Sbjct:   153 LLNLVMLGWLLGRQQPKAAMWQLIFANVANIILDVLFVLGFGWGVKGAALASVFADITAF 212

Query:   305 -IAAYMMI 311
              +A YM++
Sbjct:   213 SVALYMVL 220

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|SO_4617 SO_4617 "DNA-damage-inducible protein F" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 151 (58.2 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 50/188 (26%), Positives = 91/188 (48%)

Query:   130 PLMSLIDTAVIGQGS-SLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188
             PL+ L+DTAVIG  S +  L  +  G+ +   + ++  FL +AT+ LVA +      N++
Sbjct:    36 PLLGLVDTAVIGHLSDAYYLGGVALGSTIITLIIWLLGFLRMATTGLVAQAY---GANDI 92

Query:   189 QHQISVLLFVG-LACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAV 247
               Q+ +L+    LA G  + +      + +L+      +V +     +Y QIR  + P  
Sbjct:    93 NAQLKLLVQGAMLATGLGIAMILLQVPLLSLALSFSEASVEVERYCREYFQIRIWSTPFA 152

Query:   248 LTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQV--- 304
             L   V     LG +     +  L+ A+  N I D++     G+G+ GAA A++ + +   
Sbjct:   153 LLNLVMLGWLLGRQQPKAAMWQLIFANVANIILDVLFVLGFGWGVKGAALASVFADITAF 212

Query:   305 -IAAYMMI 311
              +A YM++
Sbjct:   213 SVALYMVL 220

GO:0003674 "molecular_function" evidence=ND

GO:0006974 "response to DNA damage stimulus" evidence=ISS

UNIPROTKB|Q5LPD9 dinF "DNA-damage-inducible protein F" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 51/198 (25%), Positives = 97/198 (48%)

Query:   113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIA 171
             + ++K   P     +  P++  +DTAV+GQ   +  +AA+G G ++   + +IF FL + 
Sbjct:    10 QRVLKIAVPIMLANMTVPILGAVDTAVVGQIPQAAPIAAVGVGAIILSAIYWIFGFLRMG 69

Query:   172 TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILP 231
             T+ L A +     + EV   ++  L +G+A G ++++        AL+    S  V  L 
Sbjct:    70 TAGLTAQAHGAGHEGEVAALLTRSLMIGVAGGVALILLQLPIYWGALAVSPASAEVETL- 128

Query:   232 AANKYVQIRGLAWPAVL-----TGWVAQSASLGMKDSWGPLKALVVASAVN-GIGDIVLC 285
              A  Y+ IR  + PA +     TGW+     + ++ +   L   +  + +N G+ D+   
Sbjct:   129 -ARGYMSIRIWSAPAAIAIYGITGWL-----IALERTRAVLVLQLWMNGLNMGL-DLWFV 181

Query:   286 RFLGYGIAGAAWATMASQ 303
               LG+G+ G A+AT  ++
Sbjct:   182 LGLGWGVNGVAFATFLAE 199

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|SPO_2909 SPO_2909 "DNA-damage-inducible protein F" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 51/198 (25%), Positives = 97/198 (48%)

Query:   113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIA 171
             + ++K   P     +  P++  +DTAV+GQ   +  +AA+G G ++   + +IF FL + 
Sbjct:    10 QRVLKIAVPIMLANMTVPILGAVDTAVVGQIPQAAPIAAVGVGAIILSAIYWIFGFLRMG 69

Query:   172 TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILP 231
             T+ L A +     + EV   ++  L +G+A G ++++        AL+    S  V  L 
Sbjct:    70 TAGLTAQAHGAGHEGEVAALLTRSLMIGVAGGVALILLQLPIYWGALAVSPASAEVETL- 128

Query:   232 AANKYVQIRGLAWPAVL-----TGWVAQSASLGMKDSWGPLKALVVASAVN-GIGDIVLC 285
              A  Y+ IR  + PA +     TGW+     + ++ +   L   +  + +N G+ D+   
Sbjct:   129 -ARGYMSIRIWSAPAAIAIYGITGWL-----IALERTRAVLVLQLWMNGLNMGL-DLWFV 181

Query:   286 RFLGYGIAGAAWATMASQ 303
               LG+G+ G A+AT  ++
Sbjct:   182 LGLGWGVNGVAFATFLAE 199

GO:0003674 "molecular_function" evidence=ND

GO:0006974 "response to DNA damage stimulus" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	2e-56
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	2e-24
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	5e-18
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	1e-17
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	2e-17
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	7e-14
PRK10367	441	PRK10367, PRK10367, DNA-damage-inducible SOS respo	1e-11
cd13140	435	cd13140, MATE_like_1, Uncharacterized subfamily of	3e-10
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	3e-10
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	4e-10
cd13124	434	cd13124, MATE_SpoVB_like, Stage V sporulation prot	8e-10
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	5e-09
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	2e-08
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	2e-08
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	3e-08
pfam01554	161	pfam01554, MatE, MatE	1e-07
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	2e-07
cd13149	434	cd13149, MATE_like_2, Uncharacterized subfamily of	5e-05
cd13128	402	cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu	5e-05
cd13135	429	cd13135, MATE_like_9, Uncharacterized subfamily of	1e-04
cd13147	441	cd13147, MATE_MJ0709_like, Uncharacterized subfami	2e-04
cd13144	434	cd13144, MATE_like_4, Uncharacterized subfamily of	2e-04
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	5e-04
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	7e-04
cd13123	420	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of	8e-04
COG2244	480	COG2244, RfbX, Membrane protein involved in the ex	0.002
cd13146	433	cd13146, MATE_like_6, Uncharacterized subfamily of	0.002

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score =  188 bits (481), Expect = 2e-56
 Identities = 73/242 (30%), Positives = 123/242 (50%), Gaps = 6/242 (2%)

Query: 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIA 171
           +EI+    PA    I  PL+ L+DTAV+G  GS+  L A+  GT + + + ++F FL + 
Sbjct: 3   REILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTTIFNTLFWLFGFLRMG 62

Query: 172 TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILP 231
           T+ LVA +L   D+ E    +   L + LA G  +++        AL     S  V    
Sbjct: 63  TTGLVAQALGAGDREEAIALLVRALLLALAIGLLLILLQSPLLALALLLLGASAAV--AA 120

Query: 232 AANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYG 291
            A +Y++IR L  PAVL  +VA     G++D+  PL   +V + VN + D +    LG+G
Sbjct: 121 LARQYLRIRILGAPAVLLNYVATGWFRGLQDTRTPLILQIVGNVVNIVLDPLFVFGLGWG 180

Query: 292 IAGAAWATMASQVIAAYMMIINLNQKGYNAFAI---SIPLPSELLAIFELAAPVFVMMMS 348
           +AGAA AT+ +Q + A + +  L ++           +P  + L  +F+L   +F+  ++
Sbjct: 181 VAGAALATVIAQYLGALLGLWLLRRRVRLLGKSLSRRLPSKAALKRLFKLNRDIFIRTLA 240

Query: 349 KV 350
            +
Sbjct: 241 LL 242

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score =  103 bits (258), Expect = 2e-24
 Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 8/243 (3%)

Query: 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIA 171
           +K ++K   P     +   L  L+DT ++G   +  LAA+G    +   +  IF+ L   
Sbjct: 16  LKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTG 75

Query: 172 TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILP 231
           T+ LVA ++   D+ + +  +   L + L  G  + I   FF    L        V  L 
Sbjct: 76  TTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEV--LE 133

Query: 232 AANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCR--FLG 289
            A +Y++I  L  P  L  +V      G+ D+  P+  L++ + +N + + +L    F G
Sbjct: 134 LAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGG 193

Query: 290 YGIAGAAWATMASQVIAA----YMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVM 345
            G+AGAA AT+ ++ I A      ++            +  P    L  I  L  P+F+ 
Sbjct: 194 LGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLE 253

Query: 346 MMS 348
            +S
Sbjct: 254 SLS 256

Length = 455

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 84.1 bits (209), Expect = 5e-18
 Identities = 50/249 (20%), Positives = 96/249 (38%), Gaps = 21/249 (8%)

Query: 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIA- 171
           + I     P     +   L+ L+D  ++G+  +  +AA+G  T        +++ L +  
Sbjct: 1   RRIWSLAWPVILENLLQTLVGLVDVFMVGRLGAEAIAAVGLAT------QVLWLLLVLNM 54

Query: 172 -----TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKN 226
                T  LV+ S    D    +  +   L + L     + +    F    L        
Sbjct: 55  ALGTGTVALVSQSYGAGDYERARRALGQSLLLALLLSLPLALLGLLFAEPLLRLLGADPE 114

Query: 227 VHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVL-- 284
           V  +  A  Y++I  L  P      V  +A  G  D+  P+  +++ + +N + D VL  
Sbjct: 115 V--IALALTYLRIVLLGIPFFFLSLVGNAALRGAGDTKTPMYIMIIVNVLNIVLDYVLIF 172

Query: 285 --CRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYN---AFAISIPLPSELLAIFELA 339
               F G G+AGAA AT+ S+V+ A +++  L +       +F         +  +  + 
Sbjct: 173 GLWGFPGLGVAGAALATVISRVVGALLLLFLLLRGRLPIKISFKGFRLDRKIIKKLLRIG 232

Query: 340 APVFVMMMS 348
            P  +  + 
Sbjct: 233 LPAGLEQLL 241

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 130 PLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQ 189
           PL+ L+DTA +G    ++LAA+  G+ +   +  I M L  AT+ LVA ++   +   + 
Sbjct: 10  PLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLG 69

Query: 190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLT 249
            Q    L + L  G  +L+   FF    LS       V     A  Y++I  L  PA L 
Sbjct: 70  RQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEV--AELAQDYLRILILGIPAYLL 127

Query: 250 GWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVL--CRFLGYGIAGAAWATMASQVIAA 307
            +V +    G  D+  P+   ++ + +N I + +L   +F   GI GAA AT+ S  +  
Sbjct: 128 NFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMF 187

Query: 308 YMM---IINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMM 346
            ++   I    + G     +  P    L  + +L  P+   +
Sbjct: 188 LLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRV 229

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 82.5 bits (205), Expect = 2e-17
 Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 10/223 (4%)

Query: 131 LMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQ 189
           L +L+D  ++GQ      LAA+  G+ +   ++ I M LS+  + L++  +  +D+ + +
Sbjct: 21  LYNLVDLLIVGQFLGVAALAAVSNGSPIIFLLTAIGMGLSMGGTILISQYIGAKDEEKAK 80

Query: 190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLT 249
             +  LL + L  G  + I    F    L          IL  A  Y++I  L  P +  
Sbjct: 81  KAVGTLLVLFLILGIVLTILGLLFAPPILRLMNTPAE--ILELAVSYLRICFLGIPFI-F 137

Query: 250 GWVAQSASL-GMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAY 308
           G+ A SA L G+ DS  PL  +++A  +N I D++       G+AGAA AT+ +Q I+  
Sbjct: 138 GYNAYSAILRGLGDSKTPLYFVIIACVLNIILDLLFIAVFHMGVAGAALATVIAQAISVL 197

Query: 309 MMIINLNQKGYNAFAISI----PLPSELLAIFELAAPVFVMMM 347
           + +  L +K    F +S+         L  I ++  P  +   
Sbjct: 198 LALYYLRKKK-LPFKLSLKDFRFDKEILKEILKIGLPSALQQS 239

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 72.0 bits (177), Expect = 7e-14
 Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 8/227 (3%)

Query: 127 ICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186
           +   L +L+DT  +G+     LAA+G    L   +  + + LS+ TS L++ ++   D+ 
Sbjct: 9   LLQTLYNLVDTFFLGRLLGDALAAVGLAFPLIALLIALGVGLSVGTSALISQAIGAGDEE 68

Query: 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPA 246
           + +  +   + + +  G  +     FF    LS     + V  +  A  Y+ I  L  P 
Sbjct: 69  KARRVLVQSIVLAILLGLLLAALLLFFSPLILSLLGAEEEV--IELAATYLTILILGLPI 126

Query: 247 VLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLG---YGIAGAAWATMASQ 303
              G V      G  D+   +   V+++ +N + D +L   LG    GIAGAA AT+ S 
Sbjct: 127 TFLGAVLSGILQGEGDTRTAMIISVLSNLLNILLDPLLIFGLGPPELGIAGAALATVISY 186

Query: 304 VIAA---YMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMM 347
           VI A    + +    +      ++  P    L  +  +  P  +   
Sbjct: 187 VIGALLLLIYLRKGKKILKFKLSLLKPDLELLRRLLRIGLPSAIQNS 233

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 23/195 (11%)

Query: 127 ICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFM---FLSIATSNLVATSLTN 182
           I  PL+ L+DTAVIG   S + L  +  G       S++FM   FL ++T+ L A +   
Sbjct: 23  ITVPLLGLVDTAVIGHLDSPVYLGGVAVGATA---TSFLFMLLLFLRMSTTGLTAQAFGA 79

Query: 183 RDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGL 242
           ++   +   +   L + L  G  + +        AL    GS+ V  L  A ++++IR L
Sbjct: 80  KNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAV--LEQARRFLEIRWL 137

Query: 243 AWPA-----VLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAW 297
           + PA     VL GW+     LG++ +  P+  LVV + +N + D+ L   L   + GAA 
Sbjct: 138 SAPASLANLVLLGWL-----LGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAAL 192

Query: 298 ATMASQVIAAYMMII 312
           AT    VIA Y  ++
Sbjct: 193 AT----VIAEYATLL 203

Length = 441

>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 52/221 (23%), Positives = 84/221 (38%), Gaps = 12/221 (5%)

Query: 133 SLIDTAVIGQGSSLELAALGPGTVLCDNMSY-IFMFLSIATSNLVATSLTNRDKNEVQHQ 191
           +L D   +G+  S  +AA+G        ++Y + +   I     V+ S+  +D+ E +  
Sbjct: 25  NLTDMFWVGRLGSDAVAAVGTAGFFV-WLAYALALLSKIGAQVKVSQSIGAKDEKEARKY 83

Query: 192 ISVLLFVGLACGFSMLIFTKFFGMQALSAFT-GSKNVHILPAANKYVQIRGLAWPAVLTG 250
               L + L  G    +    F    +  F  G   V  L  A  Y++I  L        
Sbjct: 84  ARNALQLNLLLGILYGLLLLLFAKPLIGFFNLGDAEVISL--AITYLRIVALGLIFSFLN 141

Query: 251 WVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLC----RFLGYGIAGAAWATMASQVIA 306
            V       + DS  P     +   +N I D +L      F   G+AGAA AT+ +Q I 
Sbjct: 142 PVFTGIFNALGDSKTPFIINAIGLVLNIILDPLLIFGFGPFPALGVAGAALATVLAQAIV 201

Query: 307 AYMMIINLNQKGYNAFAISI---PLPSELLAIFELAAPVFV 344
             + +  L +K      I I   P    +  I +L  PV +
Sbjct: 202 FLLFLYALKKKKGLFLKIRILKRPDRKYIKEILKLGLPVAL 242

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 435

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 52/239 (21%), Positives = 87/239 (36%), Gaps = 10/239 (4%)

Query: 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIA 171
            +EI+K   P     +   +M   D A +G+ S + LAA GP  VL   +  +F  LS  
Sbjct: 4   YREILKIALPLVLSMLSQTVMGFTDRAFLGRLSEVALAASGPAGVLYFAILMLFFGLSSG 63

Query: 172 TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILP 231
               VA        + +   +   L+  L     + + +             S    +  
Sbjct: 64  VQVFVAQYNGAGRYSRIGRVLWQGLYFSLLLAPLLALLSALAAPLLFLLLGHSP--EVQA 121

Query: 232 AANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLC----RF 287
              +Y +IR L  P  L G   ++   G+  +   + A +V   VN + D  L      F
Sbjct: 122 LEVEYFRIRILGAPFSLLGAALRAFFSGIGRTRVVMVANLVMVVVNIVLDYALIFGKLGF 181

Query: 288 LGYGIAGAAWATMASQ----VIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPV 342
              GIAGAA AT+ ++    +    ++    N++ +            L  I  L  P 
Sbjct: 182 PAMGIAGAAIATVIAEAVSLLFFLLLLFRRKNRRRFGLRRAWRFDRELLRRILRLGLPS 240

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 60.3 bits (147), Expect = 4e-10
 Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 30/231 (12%)

Query: 134 LIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSI------ATSNLVATSLTNRDKNE 187
           L DT  +G+  +  +AA  P          IF+F+S+      A + LVA      D ++
Sbjct: 32  LADTFWLGRLGADAVAA--PSIS----WPLIFLFISLGGGLTVAGTALVAQYTGAGDYDK 85

Query: 188 VQH----QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLA 243
                    S ++ + L       I ++      L    G+    + P A  Y++I  L 
Sbjct: 86  ANKVAGQTFSFVIILSLILAVLGYILSR----PLLLLLIGAPE-EVYPLALAYLRIIFLG 140

Query: 244 WPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVL----CRFLGYGIAGAAWAT 299
            P +   +V  S   G+ D+  P+K +  +  +N I D +L      F G G+AGAA AT
Sbjct: 141 LPFMFIFFVFNSLLRGIGDTKTPMKIMFGSVLLNVILDPLLIFGIGPFPGLGVAGAALAT 200

Query: 300 MASQVIAAYMMIINLNQKGYNAFAISI----PLPSELLAIFELAAPVFVMM 346
           + S+ IAA + +  L  KG     IS+    P    L  IF +  P  +  
Sbjct: 201 VISRGIAAVIGLYLLF-KGRVGLKISLRDLKPDWEWLKKIFRIGLPSSIEQ 250

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins

 Score = 59.4 bits (145), Expect = 8e-10
 Identities = 53/233 (22%), Positives = 93/233 (39%), Gaps = 49/233 (21%)

Query: 106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGT------VLCD 159
            S    +KE++ +  P T   +  PL+ LID+  + +   L+ A L          +L  
Sbjct: 217 ISTKEILKELLSYAIPITLSSLILPLLQLIDSFTVPRR--LQAAGLSESEATALYGILTG 274

Query: 160 N-MSYIFMFLSIATSNLVATSL--------TNRDKNEVQHQIS----VLLFVGLAC--GF 204
                + +   IAT+  ++TSL           DK E++ +I+    + L +GL    G 
Sbjct: 275 RAQPLVQLPTVIATA--LSTSLVPAISEAYAKGDKKELRRRINQALRLTLLIGLPAAVGL 332

Query: 205 SML---IFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASL--G 259
           ++L   I T  FG                      +QI  LA   +       +A++  G
Sbjct: 333 AVLAEPINTLLFGD---------------SEGGLILQI--LAPSILFLSLQQVTAAILQG 375

Query: 260 MKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMII 312
           +     P+  L++   V  + + VL    G  I GAA AT+   ++AA + + 
Sbjct: 376 LGKVKIPVINLLIGLLVKIVLNYVLIPIFG--IYGAAIATVIGFLVAALLNLR 426

The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 434

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 56.7 bits (138), Expect = 5e-09
 Identities = 58/249 (23%), Positives = 104/249 (41%), Gaps = 28/249 (11%)

Query: 115 IMKFTGPAT-GLWICGPLMSLIDTAVIGQG-SSLELAALG---PGTVLCDNMSYIFMFLS 169
            +KF  PA  G+ + G L +++D   +G G  +L LAA+    P  +L   +  + + + 
Sbjct: 6   FLKFALPAIIGMLVNG-LYNIVDGIFVGHGVGALALAAVNLVFPIIML---LMALGLMIG 61

Query: 170 IATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHI 229
           +  ++L++  L   D+ +     S  L + L  G  + I    F    L     S    +
Sbjct: 62  VGGASLISRRLGAGDREKANRIFSTALLLSLILGLLLTILGLLFLDPLLRLLGASG--EL 119

Query: 230 LPAANKYVQIRGLAWPAVLTGWVAQ-------SASLGMKDSWGPLKALVVASAVNGIGDI 282
           LP A  Y++I  L  P  +   V            L M         +++ + +N I D 
Sbjct: 120 LPYAVDYLRIILLGAPFTILSSVLNNLLRAEGKPKLAML-------GMLIGAVLNIILDP 172

Query: 283 VLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG---YNAFAISIPLPSELLAIFELA 339
           +    LG GIAGAA AT+ +Q+I+  ++++   +       +          +  I  L 
Sbjct: 173 LFIFVLGLGIAGAALATVIAQLISLLLLLLYFFRGKSLLKLSLLRFKLSLKIIKEILALG 232

Query: 340 APVFVMMMS 348
            P F+M +S
Sbjct: 233 FPSFLMQLS 241

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 15/190 (7%)

Query: 131 LMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLS---IATSNLVATSLTNRDKNE 187
            M  +DT + G+  + +LAA+  G+ L      +F F     +A + LVA +    D+  
Sbjct: 21  AMGFVDTVMAGRLGADDLAAVALGSSL---WFPVFTFGMGLLLAVTPLVAQAHGAGDRRR 77

Query: 188 VQHQISVLLFVGLACGF-SMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPA 246
           ++  +   L++ L      ML+   +     L        V  +  A  Y+       P 
Sbjct: 78  IRRAVRQGLWLALLLSLPLMLLL--WLAPPILPLMGQEPEVAAI--ARGYLLALAWGIPP 133

Query: 247 VLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCR----FLGYGIAGAAWATMAS 302
            L   V +S    +  +   +   ++A  +N   + VL          G AGA  AT   
Sbjct: 134 ALLFQVLRSFLDALGRTRPAMVITLLALVLNIPLNYVLIFGKFGLPALGGAGAGLATAIV 193

Query: 303 QVIAAYMMII 312
             +    +  
Sbjct: 194 YWLMFLALAF 203

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 13/227 (5%)

Query: 131 LMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQH 190
           L+  IDT ++ + S   +AA+G    +   +  IF F+S  TS L+A  L  +DK + + 
Sbjct: 21  LLGTIDTFMLSRYSDNAVAAVGVANQILFLLILIFSFISTGTSILIAQYLGAKDKKKARQ 80

Query: 191 QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTG 250
              V L   L  G    +   FFG + L          +L   + Y++I G +    L  
Sbjct: 81  IAGVALLFNLLLGLVFSLLLLFFGAELLRLM--GLPPELLALGSTYLRIVGGS--LFLQA 136

Query: 251 W-VAQSASL-GMKDSWGPLKALVVASAVNGIGD-IVLCRFLG---YGIAGAAWATMASQV 304
             +  SA L     +  P+   ++ + +N +G+ +++  + G    G+AG A +T+ S+ 
Sbjct: 137 LSLTLSAILRSHGRTKIPMYVSLIMNILNIVGNYLLIFGWFGLPKLGVAGVAISTVISRA 196

Query: 305 IAA--YMMIINLNQKGYNAFAISIPLPSELLA-IFELAAPVFVMMMS 348
           +      +++    K         P P +LL  I ++  P     +S
Sbjct: 197 VGLVLLFILLFRKLKIRFRLKDLRPFPKKLLKKILKIGLPSAGEELS 243

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 2/206 (0%)

Query: 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFL 168
              +KEI++   P     +   L  L+ T  + +  ++ LAA G    +   +      +
Sbjct: 237 RKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGI 296

Query: 169 SIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVH 228
           + A + LV  +L   +    +    + L + L     + +    F    +S FT   +  
Sbjct: 297 AQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFT--TDPE 354

Query: 229 ILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFL 288
           ++  A   + I  L  P     +V      G  D+  P    +++     +    L  F 
Sbjct: 355 VIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFF 414

Query: 289 GYGIAGAAWATMASQVIAAYMMIINL 314
             G+AG       S ++ A ++++ L
Sbjct: 415 FLGLAGVWIGFPLSLILRAILLLLRL 440

Length = 455

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 2/153 (1%)

Query: 131 LMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQH 190
           L SLIDT  +G   ++ LAA+     +   +    + LS A + LV  +L   +      
Sbjct: 11  LYSLIDTLFVGHLGAVALAAVSIANSIASLIFMFLLGLSTALTTLVGQALGAGNFKRAGV 70

Query: 191 QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTG 250
            +   L + L     + +    F    LS FT  +   +L  A+KY++I  L  P +   
Sbjct: 71  ALRQGLILSLLISLPIALLIILFREPILSLFTQDE--EVLELASKYLRILALGIPFLSLQ 128

Query: 251 WVAQSASLGMKDSWGPLKALVVASAVNGIGDIV 283
           +V      G  D+  PL   +++  +N   + +
Sbjct: 129 FVLSGFLRGAGDTKPPLYINLISLLLNIPLNYL 161

The MatE domain. Length = 161

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 5/208 (2%)

Query: 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMF 167
              ++ +++   P+        L  LI  A++   G +  LAA      +        + 
Sbjct: 215 LELLRRLLRIGLPSAIQNSLLSLGLLIIVAIVAAFGGAAALAAYTVAFRIASLAFMPALG 274

Query: 168 LSIATSNLVATSLTNRDKNEV-QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKN 226
           L+ A   +V  +L   + +   +     LL   L      L+    F    LS FT    
Sbjct: 275 LAQAALPVVGQNLGAGNFDRARRITWVALLIGLLIGAVLGLLIL-LFPEPILSLFTNDPE 333

Query: 227 VHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCR 286
              L  A  Y++I  + +  V  G+V Q+       +   L   +++  V  +    +  
Sbjct: 334 --FLELAVSYLRILAIYYLFVGIGYVLQAGFQAAGRTLKSLIVSLLSYWVVRLPLAYVLA 391

Query: 287 FLGYGIAGAAWATMASQVIAAYMMIINL 314
           +LG G+ G   A + S ++AA ++++  
Sbjct: 392 YLGLGLYGIWLALVISLILAALVLLLFF 419

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 55/255 (21%), Positives = 101/255 (39%), Gaps = 19/255 (7%)

Query: 103 LADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMS 162
           L + SI   +    K T P     +   + +L DT  +G+  + ELAA+     +   ++
Sbjct: 2   LTEGSIPRHLI---KLTLPMIFGILAMLIFNLTDTFFVGKLGTKELAAISFTFPVVLFLN 58

Query: 163 YIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT 222
            + + L I  S +++ ++   D+N+ +   +  L + L     + +   F      S   
Sbjct: 59  SLTIGLGIGASAVISRAIGAGDRNKAKRLATDSLILSLLLSVIVSLLGLFTIPPLFSLL- 117

Query: 223 GSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDI 282
           G+    ILP   +Y+ I  L    ++   V  +      D+  P   ++ A+ VN I D 
Sbjct: 118 GASGE-ILPLIVEYMAIWYLGLVFLVLPMVGNAIIRATGDTKRPSLVMLGAALVNVILDP 176

Query: 283 VLCRFLGY------GIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELL--- 333
           +L    G+      GIAGAA AT+ S+ +     +  L+   +     S P    L    
Sbjct: 177 IL--IFGFGPIPGMGIAGAAIATVISRALGLGAALYFLHYH-HRLIDFSEPSLKALFRSW 233

Query: 334 -AIFELAAP-VFVMM 346
             I  +  P     +
Sbjct: 234 KDILSIGIPAALSNI 248

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 434

>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 24/213 (11%)

Query: 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFL 168
               KE+++F+ P     I   + + IDT ++G         LG   V   N +Y    L
Sbjct: 202 LKLAKELLRFSIPLALSGIFSLIYTRIDTIMLGY-------FLGDAAVGIYNAAYRIAEL 254

Query: 169 SIATSNLVATSLT-------NRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAF 221
            +   + ++T+L          DK+E++  +             + I    F    ++  
Sbjct: 255 LLFIPSAISTALFPRISELYKNDKDELKKLLKKSFKYLFLISLPIAIGLFLFAEPIITLL 314

Query: 222 TGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASL--GMKDSWGPLKALVVASAVNGI 279
            G +    LPAA   +QI  LAW  +         S+   +      LK L++ + +N I
Sbjct: 315 FGEEY---LPAAL-VLQI--LAWGFLFIFLNGIFGSILQAIGKQKLTLKILLIGALLNVI 368

Query: 280 GDIVLCRFLGYGIAGAAWATMASQVIAAYMMII 312
            +++L     YGI GAA AT+ S+ I   +++ 
Sbjct: 369 LNLLLIPK--YGIIGAAIATLISEFIIFILLLY 399

Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 402

>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 131 LMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQH 190
           L  L+D A +G+ S    +A+G  T   + ++     +SI  + L + S+  +D   +  
Sbjct: 19  LQMLVDRAFLGRISIRYYSAVGNVTTPFNTITGFLGSISIGFTILGSQSVGAKDIKRIND 78

Query: 191 QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTG 250
                +      G  + +    FG + +    G     IL  +  YV+I  +    +   
Sbjct: 79  YAISSIVYNSIIGVILFLLW-LFGARIIFVLFGVDG-QILGYSINYVRIFSIYLLLLGIL 136

Query: 251 WVAQSASLGMKDSWGPLKALVVASAVNGIGDIVL----CRFLGYGIAGAAWATMASQVIA 306
           +   S   G+ ++   +   ++ + +N I D VL      F   GI GAA AT  + V+ 
Sbjct: 137 FTFSSILQGIGETKPIMYGGIIKNLLNVILDYVLIFGNFGFPRLGIIGAAIATTIANVLN 196

Query: 307 AYMMII 312
             +++ 
Sbjct: 197 LIILVY 202

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 429

>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query: 259 GMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMI 311
           G  D+   + A+V  S +N I D +    LG GIAGAAWAT+ S +I++ +++
Sbjct: 152 GEGDTKRAMYAMVAGSILNIILDPIFIYTLGLGIAGAAWATVISMLISSLVLL 204

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 441

>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 26/202 (12%)

Query: 131 LMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIF--MFLSIATSN--------LVATSL 180
           L +++D+  + +     L A          +S  F    L IA +         L++ SL
Sbjct: 26  LYNIVDSIFVARLGENALTA----------VSLAFPIQNLMIAVAVGTGVGVNALLSRSL 75

Query: 181 TNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIR 240
             +D+ E     +  L + L      L+   F        FT      IL     Y+   
Sbjct: 76  GEKDQKEANKAANNGLLLALLSYLLFLLLGLFGVKPFFRLFTDDPE--ILEYGYAYLSWC 133

Query: 241 GLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVL----CRFLGYGIAGAA 296
            +    +    + +       ++  P+ A ++ + +N I D +L      F   GIAGAA
Sbjct: 134 VIFSFGMFFQILCEKVLQSTGNTITPMIAQLIGAIINIILDPILIFGLFGFPAMGIAGAA 193

Query: 297 WATMASQVIAAYMMIINLNQKG 318
            AT+  Q++A ++    L +K 
Sbjct: 194 IATVIGQILAMFLAFFFLLRKN 215

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 434

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 41.3 bits (98), Expect = 5e-04
 Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 9/209 (4%)

Query: 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMF 167
               IK++++   PA    +   L  L+  A++    +  LAA   G  +    S  FM 
Sbjct: 221 DRKIIKKLLRIGLPAGLEQLLRSLGFLVLLAIVASYGTAALAAYQIGLRI---ESLAFMP 277

Query: 168 ---LSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGS 224
               S+A S LV  +L   D +E +      L +G+     + +    F     S FT  
Sbjct: 278 GFGFSMAASTLVGQNLGAGDPDEARRYGKRALRLGVLFMGLLGLLLFIFAPPLASLFTPD 337

Query: 225 KNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIG-DIV 283
             V  +     Y++I  L+ P +   +V   A  G  D+  PL   +++  +  +    +
Sbjct: 338 PEV--IELGVLYLRIVALSQPFLAISFVLSGALRGAGDTRPPLIINLISMWLVRLPLAYL 395

Query: 284 LCRFLGYGIAGAAWATMASQVIAAYMMII 312
           L   LG G+ G   A     ++ A +++ 
Sbjct: 396 LGFVLGLGLTGIWLAMFVDTIVRAILLLY 424

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 46/260 (17%), Positives = 87/260 (33%), Gaps = 47/260 (18%)

Query: 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMF-LSIA 171
           K++++   P     +    +S++    +G    LELAA    +   +   +  +  L+ A
Sbjct: 3   KKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLASA 62

Query: 172 TSNLVATSLTNRDKNEV----QHQISVLLFVGLACGFSMLIFTK----FFGMQALSAFTG 223
              L   +   ++   V    Q  + +LL   +     + + T+      G     A   
Sbjct: 63  LDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISL-LWLNTEPILLLLGQDPEIARLA 121

Query: 224 SKNVHI----LPAA------NKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVA 273
            + +      L A        +Y+Q +G+  P V    VA                    
Sbjct: 122 GEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVA-------------------- 161

Query: 274 SAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAA-----YMMIINLNQKGYNAFAISIPL 328
             +N + + +L   LG G  GAA AT  S  +       Y+     ++  +  F  S   
Sbjct: 162 LLLNILLNYLLVFVLGLGFIGAALATSISYWLIVVLLLLYIFFSKGHKATWGGF--SREA 219

Query: 329 PSELLAIFELAAPVFVMMMS 348
                   +LA P  +M+  
Sbjct: 220 FRGWGPFLKLAIPSALMLCL 239

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 40.9 bits (97), Expect = 8e-04
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 260 MKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317
           +KD+  P+K  V+A AVN + +++L + L  G  G A AT  S  + A ++++ L ++
Sbjct: 365 LKDTKTPVKIAVIAVAVNILLNLLLIKPL--GHVGLALATSLSAWVNALLLLVLLRRR 420

Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 420

>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 36/238 (15%), Positives = 85/238 (35%), Gaps = 20/238 (8%)

Query: 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIA 171
           +KE+++F  P     +   L + IDT ++G         +        + +   + L + 
Sbjct: 212 LKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIY-------SAAQRLVSLLLI 264

Query: 172 TSNLVATSL--------TNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTG 223
            ++ +   L           D+  ++  +   L + L      L+         ++   G
Sbjct: 265 VASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFG 324

Query: 224 SKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIV 283
            K     P     +Q+  LA   +    +  S    +      L   ++++ +N I +++
Sbjct: 325 EKYASAAP----ILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLL 380

Query: 284 LCRFLGYGIAGAAWATMASQVIAA-YMMIINLNQKGYNAFAISIPLPSELLAIFELAA 340
           L    G   A  A A++ +  +   Y++ + L +  ++ F +       LL +  L  
Sbjct: 381 LIPRFGLIGAAIATASVIALALLLFYILRLRLVRTKFSYFLLLKLAALALLLLAILGL 438

Length = 480

>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 21/161 (13%)

Query: 168 LSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNV 227
           + +  S+L+A ++  +   E+       L + L     +++    F    L        +
Sbjct: 66  IQVGVSSLLARAIGAQRAKELDQAADSGLALALLAATVIVVLGYIFAEPLLQLLGAKGLL 125

Query: 228 ---------HILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNG 278
                    + LP     + I       VL G V Q            + A+++ + VN 
Sbjct: 126 LEYALEYFYYSLPGVPFIMLI------GVLMG-VLQGEGRTKY----MMMAMLIGTVVNI 174

Query: 279 IGDIVLCRFLGYGIAGAAWATMASQVIA-AYMMIINLNQKG 318
           + D +L      G+ GAA AT+ +Q I+  Y++ + L  K 
Sbjct: 175 VLDPILIFVFDMGVKGAALATVLAQAISLLYLLYVFLIGKS 215

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 433

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	100.0
PRK00187	464	multidrug efflux protein NorA; Provisional	100.0
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	100.0
PRK10189	478	MATE family multidrug exporter; Provisional	100.0
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.98
PRK01766	456	multidrug efflux protein; Reviewed	99.97
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.94
PRK00187	464	multidrug efflux protein NorA; Provisional	99.93
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.93
PRK01766	456	multidrug efflux protein; Reviewed	99.92
PRK10189	478	MATE family multidrug exporter; Provisional	99.91
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.9
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.89
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.89
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.84
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.83
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.83
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.82
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.81
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.79
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.77
PRK15099	416	O-antigen translocase; Provisional	99.74
PRK15099	416	O-antigen translocase; Provisional	99.74
PRK10459	492	colanic acid exporter; Provisional	99.73
COG2244	480	RfbX Membrane protein involved in the export of O-	99.72
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.51
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.44
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.26
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	99.21
PRK10459	492	colanic acid exporter; Provisional	99.16
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.14
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	98.88
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.86
COG2244	480	RfbX Membrane protein involved in the export of O-	98.75
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	98.51
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	98.45
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	97.81
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.38
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	96.26
COG4267	467	Predicted membrane protein [Function unknown]	92.05
COG4267	467	Predicted membrane protein [Function unknown]	90.97

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=100.00  E-value=3.4e-34  Score=278.93  Aligned_cols=238  Identities=26%  Similarity=0.331  Sum_probs=223.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 018778          110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQ  189 (350)
Q Consensus       110 ~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~  189 (350)
                      +..|+++++++|++++++++.+++.+|++++||+|++++||.+++.++..+...+..|++.+.+++++|++|+||+++++
T Consensus        14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~~   93 (455)
T COG0534          14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKAK   93 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHHHH
Confidence            34599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHH
Q 018778          190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKA  269 (350)
Q Consensus       190 ~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~  269 (350)
                      +..++++.+.+++++++.++.+.+.++++.+++.  ++|+.+.+..|+++..++.|+..++.++.+++|+.||++.+++.
T Consensus        94 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~  171 (455)
T COG0534          94 RVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA--PAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI  171 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence            9999999999999999999999999999999977  45799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHhhHHHHhh-hc-hhHHHHHHHHHHHHHHHHHHHHHHHhhccC----ccccccCCChHHHHHHHHHHHHHH
Q 018778          270 LVVASAVNGIGDIVLCRF-LG-YGIAGAAWATMASQVIAAYMMIINLNQKGY----NAFAISIPLPSELLAIFELAAPVF  343 (350)
Q Consensus       270 ~~~~~~lni~l~~ili~~-~~-~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~il~l~~P~~  343 (350)
                      .+++.++|+++||+|+++ ++ +|+.|+++||++++++.++++++++.++++    ...+.++++++.+++++++|+|.+
T Consensus       172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~  251 (455)
T COG0534         172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIF  251 (455)
T ss_pred             HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHH
Confidence            999999999999999998 57 999999999999999999999999887652    223455889999999999999999


Q ss_pred             HHHhhc
Q 018778          344 VMMMSK  349 (350)
Q Consensus       344 i~~~s~  349 (350)
                      ++++++
T Consensus       252 ~~~~~~  257 (455)
T COG0534         252 LESLSE  257 (455)
T ss_pred             HHHHHH
Confidence            998765

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=100.00  E-value=1.5e-30  Score=254.72  Aligned_cols=237  Identities=16%  Similarity=0.162  Sum_probs=214.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 018778          110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQ  189 (350)
Q Consensus       110 ~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~  189 (350)
                      +++|+++++++|.+++++++.+...+|+++++++|++++|+++++.++.++...+..|++.+..++++|++|++|+++++
T Consensus         7 ~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~~   86 (464)
T PRK00187          7 TELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEGAT   86 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH
Confidence            34699999999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHH
Q 018778          190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKA  269 (350)
Q Consensus       190 ~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~  269 (350)
                      +..++++.+.++++++..++++ +.++++.+++.  |+|+.+.+..|+++..++.|+..+...+++++|+.|+++.+++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~--~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~  163 (464)
T PRK00187         87 RLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQ--APQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI  163 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            9999999999999998887766 67999999966  78999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHhhHHHHhhh----chhHHHHHHHHHHHHHHHHHHHHHHHhhccC-cccc----ccCCChHHHHHHHHHHH
Q 018778          270 LVVASAVNGIGDIVLCRFL----GYGIAGAAWATMASQVIAAYMMIINLNQKGY-NAFA----ISIPLPSELLAIFELAA  340 (350)
Q Consensus       270 ~~~~~~lni~l~~ili~~~----~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~il~l~~  340 (350)
                      ++++.++|+++||+|++..    ++|+.|+++|+.+++.+..+.+++++++++. .+++    +.+++++.+|+++++|+
T Consensus       164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~  243 (464)
T PRK00187        164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL  243 (464)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence            9999999999999999753    5899999999999999888777666654432 2222    23567889999999999


Q ss_pred             HHHHHHhhc
Q 018778          341 PVFVMMMSK  349 (350)
Q Consensus       341 P~~i~~~s~  349 (350)
                      |.+++++.+
T Consensus       244 P~~~~~~~~  252 (464)
T PRK00187        244 PIGGTYAVE  252 (464)
T ss_pred             hHHHHHHHH
Confidence            999987764

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=100.00  E-value=1.3e-30  Score=253.44  Aligned_cols=239  Identities=21%  Similarity=0.278  Sum_probs=215.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 018778          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE  187 (350)
Q Consensus       109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~-g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~  187 (350)
                      |++.|+++++++|.+++++++.+++.+|++++|++ |++++|+++++.++.++...+..+++.+..+++||++|+||+++
T Consensus         5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~   84 (441)
T PRK10367          5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA   84 (441)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            45569999999999999999999999999999998 67799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778          188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL  267 (350)
Q Consensus       188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~  267 (350)
                      +++..++++.+.+++++++.++...+.++++.+++.  |+|+.+.+..|+++..++.|+..++.++.+++|+.||++.++
T Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~  162 (441)
T PRK10367         85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGG--SEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPV  162 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            999999999999999999998888899999999966  779999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-Cccc--cccCCCh-HHHHHHHHHHHHHH
Q 018778          268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG-YNAF--AISIPLP-SELLAIFELAAPVF  343 (350)
Q Consensus       268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~-~~~~--~~~~~~~-~~~~~il~l~~P~~  343 (350)
                      +..+++.++|+++||++++.+++|+.|+++|+.+++++.+++.++++.++. +.+.  +..++++ +.+++++++|+|.+
T Consensus       163 ~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~  242 (441)
T PRK10367        163 ILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIM  242 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHH
Confidence            999999999999999999988999999999999999999888877766532 1212  2123332 47899999999999


Q ss_pred             HHHhhc
Q 018778          344 VMMMSK  349 (350)
Q Consensus       344 i~~~s~  349 (350)
                      +++..+
T Consensus       243 ~~~~~~  248 (441)
T PRK10367        243 LRSLLL  248 (441)
T ss_pred             HHHHHH
Confidence            887653

>PRK10189 MATE family multidrug exporter; Provisional

Probab=100.00  E-value=2.3e-30  Score=253.93  Aligned_cols=244  Identities=18%  Similarity=0.190  Sum_probs=218.6

Q ss_pred             ccchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 018778          105 DQSIWNQ--IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTN  182 (350)
Q Consensus       105 ~~~~~~~--~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~  182 (350)
                      +++.|+.  .|+++++++|.+++++++.+...+|++++|++|++++|+++++.++..+...+..|++.+..++++|++|+
T Consensus        19 ~~~~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga   98 (478)
T PRK10189         19 KRKSYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGK   98 (478)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3344444  79999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCC
Q 018778          183 RDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKD  262 (350)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~  262 (350)
                      ||++++++..++++.++++++++++++.+++.++++.++.++.|+|+.+.+..|+++..++.|+..+..++.+++||.||
T Consensus        99 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~  178 (478)
T PRK10189         99 RDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGN  178 (478)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999999999999999963347899999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHhHhhHHHHhh----hchhHHHHHHHHHHHHHHHHHHHHHHHhhcc--Cccccc----cCCChHHH
Q 018778          263 SWGPLKALVVASAVNGIGDIVLCRF----LGYGIAGAAWATMASQVIAAYMMIINLNQKG--YNAFAI----SIPLPSEL  332 (350)
Q Consensus       263 ~~~~~~~~~~~~~lni~l~~ili~~----~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~  332 (350)
                      ++.++++++++.++|+++++++++.    +++|+.|+++|+.+++++.+++.++++.++.  ..+.++    .+++++.+
T Consensus       179 ~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (478)
T PRK10189        179 TKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAII  258 (478)
T ss_pred             hHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHH
Confidence            9999999999999999999999975    3799999999999999999888776665431  222221    23578999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 018778          333 LAIFELAAPVFVMMMS  348 (350)
Q Consensus       333 ~~il~l~~P~~i~~~s  348 (350)
                      ++++++|+|.+++++.
T Consensus       259 ~~il~iG~P~~~~~~~  274 (478)
T PRK10189        259 WEVMGIGIPASIESVL  274 (478)
T ss_pred             HHHHHHhccHHHHHHH
Confidence            9999999999988764

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.98  E-value=9.9e-30  Score=248.37  Aligned_cols=240  Identities=18%  Similarity=0.153  Sum_probs=219.0

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 018778          105 DQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNR  183 (350)
Q Consensus       105 ~~~~~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~-g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~  183 (350)
                      +++++   |+++++++|.+++++++.++..+|++++|++ |++++++++++.++.++...+..+++.+..++++|++|+|
T Consensus         7 ~~~~~---k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~   83 (453)
T PRK09575          7 NQSIY---RTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEG   83 (453)
T ss_pred             cCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            34455   9999999999999999999999999999996 9999999999999999999888999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCC
Q 018778          184 DKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDS  263 (350)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~  263 (350)
                      |+|++++..++++.+.++++++++++.++++++++.+++.  |+++.+.+..|+++.+++.|+..++.....++|+.|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~--~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~  161 (453)
T PRK09575         84 DLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGA--EGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESP  161 (453)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence            9999999999999999999999999999999999999966  67899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccC-ccc--cccCCChHHHHHHHHHHH
Q 018778          264 WGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGY-NAF--AISIPLPSELLAIFELAA  340 (350)
Q Consensus       264 ~~~~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~il~l~~  340 (350)
                      +.+++.++++.++|+++|+++++.+++|+.|+++|+.+++++.+++.++++++++. .+.  +..+++++.+++++++|+
T Consensus       162 ~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~  241 (453)
T PRK09575        162 NLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGS  241 (453)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhCh
Confidence            99999999999999999999998889999999999999999999988777665432 222  223567788999999999


Q ss_pred             HHHHHHhhc
Q 018778          341 PVFVMMMSK  349 (350)
Q Consensus       341 P~~i~~~s~  349 (350)
                      |.++++..+
T Consensus       242 P~~~~~~~~  250 (453)
T PRK09575        242 SSFFMYLYG  250 (453)
T ss_pred             hHHHHHHHH
Confidence            999987653

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.97  E-value=1.7e-28  Score=240.02  Aligned_cols=240  Identities=16%  Similarity=0.119  Sum_probs=217.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 018778          108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE  187 (350)
Q Consensus       108 ~~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~  187 (350)
                      .++.+|+++++++|.+++.++..+...+|+.+++++|++++++++++.++..+...+..|++.+..+.++|++|++|+++
T Consensus         7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~   86 (456)
T PRK01766          7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRER   86 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence            45557999999999999999999999999999999999999999999998888888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778          188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL  267 (350)
Q Consensus       188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~  267 (350)
                      +++..++++.+.+++++++.+++++++++++.+++.  |+|+.+.+..|+++.+++.|+..+..++++++|+.|+++.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  164 (456)
T PRK01766         87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNL--EPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM  164 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            999999999999999999999999999999999976  779999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhHHHHhh----hchhHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cc----cccCCChHHHHHHHHH
Q 018778          268 KALVVASAVNGIGDIVLCRF----LGYGIAGAAWATMASQVIAAYMMIINLNQKGYN-AF----AISIPLPSELLAIFEL  338 (350)
Q Consensus       268 ~~~~~~~~lni~l~~ili~~----~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~il~l  338 (350)
                      +.++++.++|+++++++++.    +.+|+.|+++|+.+++++.+++..+++++++.. ..    ++.+++++.+|+++++
T Consensus       165 ~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l  244 (456)
T PRK01766        165 VIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKL  244 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHc
Confidence            99999999999999999864    468999999999999999999888887654321 11    2235677899999999


Q ss_pred             HHHHHHHHhhc
Q 018778          339 AAPVFVMMMSK  349 (350)
Q Consensus       339 ~~P~~i~~~s~  349 (350)
                      |+|.+++...+
T Consensus       245 ~~P~~~~~~~~  255 (456)
T PRK01766        245 GLPIGLAIFFE  255 (456)
T ss_pred             cchHHHHHHHH
Confidence            99998887654

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.94  E-value=4e-24  Score=201.05  Aligned_cols=227  Identities=26%  Similarity=0.326  Sum_probs=206.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 018778          121 PATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGL  200 (350)
Q Consensus       121 P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~  200 (350)
                      |.++++++..++..+|+++++++|++++++++++.++.++...+..|++++..+.+++++|++|+++.++..++.+.+..
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL   80 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhHh
Q 018778          201 ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIG  280 (350)
Q Consensus       201 ~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~lni~l  280 (350)
                      +++++++++.+++++++..+++.  |++..+.+..|+++++++.++..++.+..+++|+.|+++.+++..+++.++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~  158 (342)
T TIGR00797        81 LLGLPVLLVGYFFIDPLLSLMGA--DGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIIL  158 (342)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999865  5688899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHh-hhc-hhHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc---ccCCChHHHHHHHHHHHHHHHHHhhc
Q 018778          281 DIVLCR-FLG-YGIAGAAWATMASQVIAAYMMIINLNQKGYNAFA---ISIPLPSELLAIFELAAPVFVMMMSK  349 (350)
Q Consensus       281 ~~ili~-~~~-~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~il~l~~P~~i~~~s~  349 (350)
                      +++++. .++ +|+.|+++++.+++++.+++.+++++|+...+.+   ..+++++.+|+++++|+|.++++++.
T Consensus       159 ~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~  232 (342)
T TIGR00797       159 NYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILE  232 (342)
T ss_pred             hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHH
Confidence            999987 677 8899999999999999999888777653322222   34567889999999999999988753

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.93  E-value=4.9e-24  Score=208.82  Aligned_cols=209  Identities=16%  Similarity=0.095  Sum_probs=194.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 018778          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV  188 (350)
Q Consensus       109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~  188 (350)
                      ++.+|+++++++|.+++.+++.....+|+.+++++|++++|+++++.++..+...+..|++.+.+++++|++|+||++++
T Consensus       232 ~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~  311 (464)
T PRK00187        232 RAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEA  311 (464)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            45579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCcc---chHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChH
Q 018778          189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNV---HILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWG  265 (350)
Q Consensus       189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~---~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~  265 (350)
                      ++..++++.++++++++++++++++.+++..++..++|+   |+.+.+..|+++.+++.++..++.++.+++||.||++.
T Consensus       312 ~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~  391 (464)
T PRK00187        312 RRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDART  391 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHH
Confidence            999999999999999999999999999999999532233   78999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778          266 PLKALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK  317 (350)
Q Consensus       266 ~~~~~~~~~-~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~  317 (350)
                      +++..+++. ++|++++|++.+.+++|+.|+|+++.+++++..++....++++
T Consensus       392 ~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~  444 (464)
T PRK00187        392 TFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK  444 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988 9999999999998899999999999999999888776665443

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.93  E-value=8.8e-25  Score=212.15  Aligned_cols=237  Identities=21%  Similarity=0.182  Sum_probs=218.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCHHH
Q 018778          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSY-IFMFLSIATSNLVATSLTNRDKNE  187 (350)
Q Consensus       109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~-~~~gl~~a~~~~~s~~~g~~~~~~  187 (350)
                      +++.|++++++.|+++..+.+++.+.+++.++||+|+.++|+.+++..+.+.... +..|+..+++|+|+|++|+++++.
T Consensus        24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~  103 (473)
T KOG1347|consen   24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA  103 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence            6778999999999999999999999999999999999999999999999998654 458999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778          188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL  267 (350)
Q Consensus       188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~  267 (350)
                      .+.+.+++..+....++++..+++ +.++|+..++|  ||++.+.+..|.+++++..+.+.....+..++|+|++..+..
T Consensus       104 lg~~lqrs~~~l~~~~~~~~~l~~-~~~~il~~lgq--~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~  180 (473)
T KOG1347|consen  104 LGVYLQRSGIVLLVQGLPISLLIL-NSEPILLLLGQ--DPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL  180 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhCC--ChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence            999999999999999999998866 88999999988  789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc---ccCCChHHHHHHHHHHHHHHH
Q 018778          268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFA---ISIPLPSELLAIFELAAPVFV  344 (350)
Q Consensus       268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~il~l~~P~~i  344 (350)
                      ++..++.++|+++++++++.+++|+.|++++..+++++...+...|+.... ....   +.+. ++.|++++++++|..+
T Consensus       181 ~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~  258 (473)
T KOG1347|consen  181 VIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAV  258 (473)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchh
Confidence            999999999999999999999999999999999999999999999876654 1121   2233 8899999999999999


Q ss_pred             HHhhcC
Q 018778          345 MMMSKV  350 (350)
Q Consensus       345 ~~~s~~  350 (350)
                      |.+.|+
T Consensus       259 miclE~  264 (473)
T KOG1347|consen  259 MICLEW  264 (473)
T ss_pred             eeHHHH
Confidence            987653

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.92  E-value=3.8e-23  Score=202.26  Aligned_cols=209  Identities=16%  Similarity=0.112  Sum_probs=196.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 018778          108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE  187 (350)
Q Consensus       108 ~~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~  187 (350)
                      .++..|+++++++|.+++.+++.+...++..+++++|++++|+++++..+.++...+..|++.+.++.++|++|+||+++
T Consensus       234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~  313 (456)
T PRK01766        234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLD  313 (456)
T ss_pred             CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778          188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL  267 (350)
Q Consensus       188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~  267 (350)
                      +++..+.++.++++++++++++++.+.+++..+|..  |+|+.+.+..|+++..+..++..++.+..+++||.||++.++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~  391 (456)
T PRK01766        314 ARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTD--DPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF  391 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence            999999999999999999999999999999999954  889999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018778          268 KALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG  318 (350)
Q Consensus       268 ~~~~~~~-~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~  318 (350)
                      +..+++. ++++++.+++...+++|+.|+++++.+++++..++.++++.+.+
T Consensus       392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~  443 (456)
T PRK01766        392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQ  443 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988 78999999998878899999999999999999998888776643

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.91  E-value=6.1e-22  Score=194.49  Aligned_cols=211  Identities=12%  Similarity=0.114  Sum_probs=196.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 018778          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV  188 (350)
Q Consensus       109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~  188 (350)
                      ++.+|++++.++|..++.++..+...+-+.+++++|++++|+++++.++.++...+..|++.+..++++|++|++|++++
T Consensus       255 ~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a  334 (478)
T PRK10189        255 FAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQA  334 (478)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            45679999999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHH
Q 018778          189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLK  268 (350)
Q Consensus       189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~  268 (350)
                      ++..+.++.+++++++.++++++++.+++..+|.  +|+|+.+.+..++++.++..|+..++.+..+++||.||++.+++
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt--~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~  412 (478)
T PRK10189        335 ERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYT--QDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW  412 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence            9999999999999999999999999999999994  48899999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 018778          269 ALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNA  321 (350)
Q Consensus       269 ~~~~~~-~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~  321 (350)
                      +++++. ++.+++.|++...+++|+.|.|++..+++.+..++.++++++.+|.+
T Consensus       413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~  466 (478)
T PRK10189        413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW  466 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            988877 67778888887777899999999999999999998888887776655

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.90  E-value=1.6e-21  Score=190.10  Aligned_cols=210  Identities=18%  Similarity=0.165  Sum_probs=197.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 018778          108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE  187 (350)
Q Consensus       108 ~~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~  187 (350)
                      .++.+|+++++++|..++.+.......+-+.+++++|++++|+++++.++.++...+..|++++.+++++|++|+||+++
T Consensus       236 ~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~  315 (455)
T COG0534         236 DRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKR  315 (455)
T ss_pred             CHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            45677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778          188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL  267 (350)
Q Consensus       188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~  267 (350)
                      +++..+.+..+++++++.++++++++.+++..+|..  |+|+.+.+..++++.++..++..++.+..+++||.||++.++
T Consensus       316 a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~--~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~  393 (455)
T COG0534         316 ARRAARLALKLSLLIALLIALLLLLFREPIISLFTT--DPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPF  393 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            999999999999999999999999999999999955  789999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018778          268 KALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYN  320 (350)
Q Consensus       268 ~~~~~~~-~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~  320 (350)
                      +..+++. .+.+++.|++...+ +|..|.|++..+++.+..++..+++++++|.
T Consensus       394 ~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~  446 (455)
T COG0534         394 IISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWR  446 (455)
T ss_pred             HHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999877 55678778887665 8999999999999999999999988877654

>TIGR01695 mviN integral membrane protein MviN

Probab=99.89  E-value=1.3e-20  Score=186.43  Aligned_cols=206  Identities=17%  Similarity=0.111  Sum_probs=190.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCHHHH
Q 018778          110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSY-IFMFLSIATSNLVATSLTNRDKNEV  188 (350)
Q Consensus       110 ~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~-~~~gl~~a~~~~~s~~~g~~~~~~~  188 (350)
                      +.+|++++++.|..++.+...+...+|..+.+.+|++++++|+.+.++.++... +..+++.++.|.+++++|++|++++
T Consensus       220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~  299 (502)
T TIGR01695       220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNEL  299 (502)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            456999999999999999999999999998777899999999999999988765 4688999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCC--ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHH
Q 018778          189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK--NVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP  266 (350)
Q Consensus       189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~--d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~  266 (350)
                      ++.+++++.+...++++++++++++++++..++++++  |+|....+..++++++++.++..+..++.+.+++.||++.+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~  379 (502)
T TIGR01695       300 RDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTP  379 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccC
Confidence            9999999999999999999999999999999997743  56788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778          267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK  317 (350)
Q Consensus       267 ~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~  317 (350)
                      ++..+++.++|++++++++  +.+|+.|+++|+.+++.+..++..++++|+
T Consensus       380 ~~~~~~~~~i~i~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~  428 (502)
T TIGR01695       380 FINSVISVVLNALLSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRR  428 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999987  467999999999999999999888777665

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.89  E-value=4.4e-21  Score=187.51  Aligned_cols=206  Identities=11%  Similarity=0.091  Sum_probs=189.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-hhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 018778          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSS-LELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE  187 (350)
Q Consensus       109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~-~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~  187 (350)
                      ++.+|++++++.|..++.....+...+...+++++|+ +++|+++++.++..+...+..|++.+..++++|++|+||+|+
T Consensus       230 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~  309 (453)
T PRK09575        230 WSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDN  309 (453)
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHH
Confidence            4557999999999999999999999999999999985 689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778          188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL  267 (350)
Q Consensus       188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~  267 (350)
                      +++..++++.+++..+++++++++.+.+++..+|.. +|+|+.+.+..|+++.+++.++..++.+..+++||.|+++.++
T Consensus       310 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~-~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~  388 (453)
T PRK09575        310 IKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNS-GDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKAL  388 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            999999999999999999999999999999999953 3679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778          268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK  317 (350)
Q Consensus       268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~  317 (350)
                      +.++...++++++.|++..  .+|+.|+|+|+.+++++.+++.+++++++
T Consensus       389 ~~~~~~~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~  436 (453)
T PRK09575        389 FISIGNMLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWRD  436 (453)
T ss_pred             HHHHHhHHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9998888889988888753  47999999999999999888877766553

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.84  E-value=1.5e-18  Score=168.95  Aligned_cols=199  Identities=10%  Similarity=-0.003  Sum_probs=171.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Q 018778          111 QIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQH  190 (350)
Q Consensus       111 ~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~  190 (350)
                      .+|++++.+.|..++.++......+-+.+++++|++++|+++++.++.++...+..|++.+..++++|++|+||++++++
T Consensus       230 ~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~  309 (441)
T PRK10367        230 NFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLD  309 (441)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHH
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCC---CChHHH
Q 018778          191 QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMK---DSWGPL  267 (350)
Q Consensus       191 ~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g---~~~~~~  267 (350)
                      ..++++.+.++++++++++++++.+++..+|.  +|+|+.+.+..++++.++..+...+..+...+++|.+   |++.++
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt--~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~  387 (441)
T PRK10367        310 VWRAACRQSGIVALLFSLVYALAGEHIIALLT--SLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM  387 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            99999999999999999999999999999994  4899999999999998876443324444444455544   599999


Q ss_pred             HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778          268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK  317 (350)
Q Consensus       268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~  317 (350)
                      +++++...+    .++..  +.+|+.|.|+|..+++.+..+++.++++++
T Consensus       388 ~~~~~~~~~----~~~~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~  431 (441)
T PRK10367        388 AVAAAGFAL----TLLTL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH  431 (441)
T ss_pred             HHHHHHHHH----HHHHH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988887553    11222  357999999999999999999888766544

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.83  E-value=1.8e-17  Score=161.64  Aligned_cols=206  Identities=18%  Similarity=0.127  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCHHHHH
Q 018778          111 QIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQ  189 (350)
Q Consensus       111 ~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~  189 (350)
                      ..|++++...|.+++.....+...+|+.+.+.+++.++++++.+.++.+++..+. .+++++..|..++...+||.++.+
T Consensus       196 ~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~  275 (451)
T PF03023_consen  196 NLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFR  275 (451)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            3599999999999999999999999999999999999999999999999988665 799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCC--CccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778          190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGS--KNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL  267 (350)
Q Consensus       190 ~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~--~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~  267 (350)
                      +.+++++...+.+.+|++++++.+++++++++++.  -|.|-.+....+++++++++|++.+..++.+.+.+++|++.++
T Consensus       276 ~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~  355 (451)
T PF03023_consen  276 KTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPV  355 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHH
Confidence            99999999999999999999999999999999742  3556678888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018778          268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG  318 (350)
Q Consensus       268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~  318 (350)
                      +..+++.++|++++++++  +.+|..|.++|+.++.++.+++++++++|+.
T Consensus       356 ~~~~~~~~lni~l~~~l~--~~~g~~Glala~sl~~~i~~~~l~~~l~r~~  404 (451)
T PF03023_consen  356 RISVISVVLNIILSILLV--PFFGVAGLALATSLSAIISALLLYILLRRRL  404 (451)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999998877  5779999999999999999999988887764

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.83  E-value=1.1e-17  Score=164.94  Aligned_cols=203  Identities=15%  Similarity=0.179  Sum_probs=178.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----C---hhhHhHH----hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018778          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG----S---SLELAAL----GPGTVLCDNMSYIFMFLSIATSNLVA  177 (350)
Q Consensus       109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~----g---~~~laa~----~la~~~~~~~~~~~~gl~~a~~~~~s  177 (350)
                      ++.+|+++++++|.+++.+...+...+|+.++++.    |   .++.+.+    +++.++..++..+..+++.+..|.++
T Consensus       221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s  300 (488)
T TIGR02900       221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDIS  300 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            45679999999999999999999999999999884    2   1222222    35566777777777899999999999


Q ss_pred             HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018778          178 TSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAS  257 (350)
Q Consensus       178 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L  257 (350)
                      +++|++|+++.++..++...+..++++|++++++.++++++.++++  ++    .+..++++++++.++..++....+++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~----~~~~~l~i~~~~~~~~~~~~~~~~~l  374 (488)
T TIGR02900       301 EAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYG--RP----DAGNFIRVLAPSFPFLYFSAPLQSIL  374 (488)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999875  32    35789999999999999999999999


Q ss_pred             hhCCCChHHHHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778          258 LGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK  317 (350)
Q Consensus       258 ~~~g~~~~~~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~  317 (350)
                      ++.||++..++..+++.++|++++++++..+.+|+.|+++|+.+++++..++..++.+|.
T Consensus       375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~  434 (488)
T TIGR02900       375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN  434 (488)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998766788999999999999999999888877654

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.82  E-value=9.3e-21  Score=159.01  Aligned_cols=161  Identities=17%  Similarity=0.208  Sum_probs=156.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 018778          121 PATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGL  200 (350)
Q Consensus       121 P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~  200 (350)
                      |.+++.+++.+...+|+.+++++|++++++++++..+.++...+..|++.++.+.++|++|++|++++++..++++.+.+
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~   80 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL   80 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHHhH
Q 018778          201 ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVAS-AVNGI  279 (350)
Q Consensus       201 ~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~-~lni~  279 (350)
                      ++++++.++++++.+++..+++.  |+|+.+.+..|+++..++.|+..+..+..+++||.|+++..++..+++. ++|++
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~  158 (162)
T PF01554_consen   81 IIGLLLSLVLLLFSEFILSLFGN--DPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP  158 (162)
T ss_dssp             HHHHHHHHHHHHHHHCCHCTSSS--TTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhHHHHHHHHhhh--hHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999966  7789999999999999999999999999999999999999999999999 99999


Q ss_pred             hhHH
Q 018778          280 GDIV  283 (350)
Q Consensus       280 l~~i  283 (350)
                      ++|+
T Consensus       159 l~yl  162 (162)
T PF01554_consen  159 LAYL  162 (162)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            8875

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.81  E-value=1.2e-17  Score=164.70  Aligned_cols=227  Identities=15%  Similarity=0.106  Sum_probs=192.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 018778          116 MKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQIS  193 (350)
Q Consensus       116 ~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~~~~  193 (350)
                      +|-+.|.++++++..+.+.+|..+++| +|+++.|+++++.++..+...+. .|++.+....++|+.|++|++++++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~   81 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK   81 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence            466899999999999999999999999 59999999999999988887776 6899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 018778          194 VLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVA  273 (350)
Q Consensus       194 ~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~  273 (350)
                      .++.+.++++++++++++++++++...+++  |++.    ..+++++++..++..+..+...++|+.++.+..+..++++
T Consensus        82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~--~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~  155 (488)
T TIGR02900        82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLK--DERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE  155 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHcC--ChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence            999999999999999999899999887755  3332    3578889999999999999999999999999999999999


Q ss_pred             HHHHhHhhHHHHh-----hhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcc--cc---ccCCChHHHHHHHHHHHHHH
Q 018778          274 SAVNGIGDIVLCR-----FLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNA--FA---ISIPLPSELLAIFELAAPVF  343 (350)
Q Consensus       274 ~~lni~l~~ili~-----~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~il~l~~P~~  343 (350)
                      .++|+.++..++.     ...+|+.|+++++.+++++..+..+++++++.+.+  .+   +.+.+++.+|+++++++|.+
T Consensus       156 ~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~  235 (488)
T TIGR02900       156 QIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLT  235 (488)
T ss_pred             HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHH
Confidence            9999887666553     23578899999999999999988776665443311  11   12345678999999999999


Q ss_pred             HHHhh
Q 018778          344 VMMMS  348 (350)
Q Consensus       344 i~~~s  348 (350)
                      ++++.
T Consensus       236 l~~~~  240 (488)
T TIGR02900       236 LSRFI  240 (488)
T ss_pred             HHHHH
Confidence            87654

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.79  E-value=1.3e-16  Score=157.86  Aligned_cols=230  Identities=12%  Similarity=0.005  Sum_probs=180.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhH-hHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHhccCCHHHHHH
Q 018778          115 IMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLEL-AALGPGTVLCDNMSYIF--MFLSIATSNLVATSLTNRDKNEVQH  190 (350)
Q Consensus       115 i~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~l-aa~~la~~~~~~~~~~~--~gl~~a~~~~~s~~~g~~~~~~~~~  190 (350)
                      ++|-+.-.++..+++.+++++|.+++++ +|++++ ++++++.++.+....+.  .|++.+..+...++.+++  ++.++
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~   79 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR   79 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence            4677888899999999999999999999 799999 89999999987776554  468888777766654333  56676


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHH
Q 018778          191 QISVLLFVGL-ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKA  269 (350)
Q Consensus       191 ~~~~~~~~~~-~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~  269 (350)
                      ....+..... +.++.+.++.+++++++..++..+.|++..+.+..|++++.++.|+..+..+.++++|+.||++.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  159 (502)
T TIGR01695        80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS  159 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence            6666555554 444455677777899999887422255777899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHhhHHHHhhhchhHHHHH--HHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHHHHHHHHHh
Q 018778          270 LVVASAVNGIGDIVLCRFLGYGIAGAA--WATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMM  347 (350)
Q Consensus       270 ~~~~~~lni~l~~ili~~~~~Gi~Gaa--~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~P~~i~~~  347 (350)
                      +++..+++++..+++  ..++|..|++  +++.+++++..++.+++++|++.......+.+++.+|++++.++|..++..
T Consensus       160 ~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~  237 (502)
T TIGR01695       160 PILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDPGLKRFLKLFLPTTLGSS  237 (502)
T ss_pred             HHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCCChhHHHHHHHHHHHHHHHH
Confidence            999988887743333  4678999998  999999999988887776654321111123466789999999999997654


Q ss_pred             h
Q 018778          348 S  348 (350)
Q Consensus       348 s  348 (350)
                      .
T Consensus       238 ~  238 (502)
T TIGR01695       238 A  238 (502)
T ss_pred             H
Confidence            3

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.77  E-value=7.7e-16  Score=149.41  Aligned_cols=230  Identities=17%  Similarity=0.030  Sum_probs=199.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCHHHH
Q 018778          110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNEV  188 (350)
Q Consensus       110 ~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~-~~gl~~a~~~~~s~~~g~~~~~~~  188 (350)
                      ...|++.+...|.+++.....+...+|+.+.+.+.+-..+.+..+..+.+++..+ ..++++.+.|..|++..++|.++.
T Consensus       229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~  308 (518)
T COG0728         229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF  308 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence            3469999999999999999999999999999999999999999999999998865 489999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCC--ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHH
Q 018778          189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK--NVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP  266 (350)
Q Consensus       189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~--d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~  266 (350)
                      ++..++++.++.++.+|.++++.+++++++.++++..  +++-.......+...+++.+++.+..++...+.+.+|+|.|
T Consensus       309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP  388 (518)
T COG0728         309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP  388 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence            9999999999999999999999999999999996542  33445667788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHHHHHHHH
Q 018778          267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVM  345 (350)
Q Consensus       267 ~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~P~~i~  345 (350)
                      +++.+++.++|+.+|++++  +.+|..|.++|+.++.++.+.++++..+|+.....   ...|.... +.|+.+-..+|
T Consensus       389 ~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~---~~~~~~~~-~~k~~l~~~i~  461 (518)
T COG0728         389 MKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP---GRGWGLFL-ILKLLLASAIM  461 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cchhhHHH-HHHHHHHHHHH
Confidence            9999999999999997776  45688889999999999999988888777642211   34444444 45555554444

>PRK15099 O-antigen translocase; Provisional

Probab=99.74  E-value=5e-16  Score=150.25  Aligned_cols=224  Identities=11%  Similarity=0.011  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHhHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCHHHHHHHH
Q 018778          115 IMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNEVQHQI  192 (350)
Q Consensus       115 i~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~~~-~~gl~~a~~~~~s~~~g~~~~~~~~~~~  192 (350)
                      ++|-+.......++..+.+.+-..++.| +|+++.+.+++...+..+...+ ..|++.+....++|+  ++|+++.++..
T Consensus         3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~   80 (416)
T PRK15099          3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV   80 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence            4566667777888888888888888888 5999999999999888877766 478888888888887  78889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 018778          193 SVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVV  272 (350)
Q Consensus       193 ~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~  272 (350)
                      ..++.+.++.+++++++.+++.+++...+++  |++    -..++.+..+..++..+.....+.+|+.||++.++...++
T Consensus        81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~  154 (416)
T PRK15099         81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFG--HTD----YQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIV  154 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998866  333    2356677777777888889999999999999999999999


Q ss_pred             HHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc--ccCCChHHHHHHHHHHHHHHHHHhh
Q 018778          273 ASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFA--ISIPLPSELLAIFELAAPVFVMMMS  348 (350)
Q Consensus       273 ~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~il~l~~P~~i~~~s  348 (350)
                      +.++|+++ +++++. ..|+.|+++|+.+++.+..+..++++.|++..+.+  ..+++++.+|+++++|+|..+++++
T Consensus       155 ~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~g~p~~~~~~~  230 (416)
T PRK15099        155 GSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQLGKFTLMALITSVT  230 (416)
T ss_pred             HHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999887 444432 23999999999999999888777766554332222  2356788999999999999887754

>PRK15099 O-antigen translocase; Provisional

Probab=99.74  E-value=1.3e-15  Score=147.48  Aligned_cols=199  Identities=14%  Similarity=-0.024  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccChhhHhHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCHH
Q 018778          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIG-QGSSLELAALGPGTVLCDNM-SYIFMFLSIATSNLVATSLTNRDKN  186 (350)
Q Consensus       109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig-~~g~~~laa~~la~~~~~~~-~~~~~gl~~a~~~~~s~~~g~~~~~  186 (350)
                      ++.+|++++++.|.+++++...+...+|+.+++ ++|++++|+|+.+.++.+.. ..+..+++++..|.++++   +|++
T Consensus       211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~  287 (416)
T PRK15099        211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR  287 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence            445699999999999999999999999999997 68999999999999998754 677799999999999985   6778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHH
Q 018778          187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP  266 (350)
Q Consensus       187 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~  266 (350)
                      +.++..++.......+++++++++++++++++.++.+++    ++.+..++++++++..+...+......+.+.++.+..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~----~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~  363 (416)
T PRK15099        288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK----FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFY  363 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999899999999998832    4557889999999999988888888777788888888


Q ss_pred             HHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018778          267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQ  316 (350)
Q Consensus       267 ~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~  316 (350)
                      ....+...+++++++++++  +.+|..|+++|+.+++.+..++......+
T Consensus       364 ~~~~~~~~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~~  411 (416)
T PRK15099        364 ILAEVSQFTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFLL  411 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999988  56899999999999999998877655443

>PRK10459 colanic acid exporter; Provisional

Probab=99.73  E-value=4.1e-15  Score=146.96  Aligned_cols=200  Identities=16%  Similarity=0.047  Sum_probs=176.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCHHH
Q 018778          110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNE  187 (350)
Q Consensus       110 ~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~-g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~  187 (350)
                      +..|++++++.|.+.+.+...+...+|++++|++ |++++|.|+.+.++.+.+.... ..++....|..++.  ++|+++
T Consensus       204 ~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~  281 (492)
T PRK10459        204 ASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEK  281 (492)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHH
Confidence            4569999999999999999999999999999995 8999999999999988765544 55778888988885  678899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778          188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL  267 (350)
Q Consensus       188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~  267 (350)
                      .++.+++.......+++|+.+++.+++++++.++++++    +..+...+++++++..+..+......++++.|+++..+
T Consensus       282 ~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~----~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~  357 (492)
T PRK10459        282 LRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK----WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF  357 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence            99999999999999999999999999999999998842    67788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778          268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK  317 (350)
Q Consensus       268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~  317 (350)
                      +.+++..+++++..+++.  ..+|+.|+++|+.+++.+.+++..++..|+
T Consensus       358 ~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~  405 (492)
T PRK10459        358 KWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIKP  405 (492)
T ss_pred             HHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988888887666555  457999999999999999988888877443

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.72  E-value=3.1e-15  Score=147.24  Aligned_cols=187  Identities=18%  Similarity=0.161  Sum_probs=174.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 018778          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE  187 (350)
Q Consensus       109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~-g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~  187 (350)
                      ++..|++++.++|..++.+...+.+.+|+++++++ |++++|.|+.+..+......+...++..+.|..++++.++|+++
T Consensus       209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~  288 (480)
T COG2244         209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKA  288 (480)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            45679999999999999999999999999999995 99999999988899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778          188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL  267 (350)
Q Consensus       188 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~  267 (350)
                      .++...+...+...+++|..++++++++++..++++++    +..+...+++++++.++..+.......+++.|+.+..+
T Consensus       289 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~----~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~  364 (480)
T COG2244         289 LKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK----YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL  364 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            99999999999999999999999999999999998854    23388899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHH
Q 018778          268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMAS  302 (350)
Q Consensus       268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is  302 (350)
                      +...++.++|++++++++  +.+|+.|+++++ .+
T Consensus       365 ~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~  396 (480)
T COG2244         365 LISLISALLNLILNLLLI--PRFGLIGAAIAT-AS  396 (480)
T ss_pred             HHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH
Confidence            999999999999999998  567899999999 44

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.51  E-value=1.3e-11  Score=120.65  Aligned_cols=202  Identities=14%  Similarity=0.096  Sum_probs=169.5

Q ss_pred             cC-hhhHhHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018778          143 GS-SLELAALGPGTVLCDNMSYIF--MFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALS  219 (350)
Q Consensus       143 ~g-~~~laa~~la~~~~~~~~~~~--~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~  219 (350)
                      +| +.+.++|.++..+.+++..+.  .++..+..|...+.. ++++++.++..++.+.+..++.+.++++.+++++++..
T Consensus         5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~   83 (451)
T PF03023_consen    5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR   83 (451)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56 567889999999999987654  358999999999998 89999999999999999999999999999999999999


Q ss_pred             HccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhHhhHHHHhhhchh---HHHHH
Q 018778          220 AFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYG---IAGAA  296 (350)
Q Consensus       220 l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~lni~l~~ili~~~~~G---i~Gaa  296 (350)
                      ++....|++..+.+..+++++.+..++..+..++.++||++++...+....++..+.-++.  +++.....|   +.+.+
T Consensus        84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~--~~~~~~~~~~~~i~~la  161 (451)
T PF03023_consen   84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILS--LLLLSNSWGQENIYALA  161 (451)
T ss_pred             HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH--HHHHHHhcCchHHHHHH
Confidence            9976668899999999999999999999999999999999999999999888877765553  333334567   89999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHHHHHHHHHh
Q 018778          297 WATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMM  347 (350)
Q Consensus       297 ~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~P~~i~~~  347 (350)
                      +|..++.++..++.+.+.+|.+.......+...++++++++...|..+...
T Consensus       162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~  212 (451)
T PF03023_consen  162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSS  212 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHH
Confidence            999999999999888888776543222223345678999999999887654

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.44  E-value=4.7e-12  Score=118.97  Aligned_cols=130  Identities=22%  Similarity=0.209  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 018778          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV  188 (350)
Q Consensus       109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~  188 (350)
                      ++..|+++++++|.+++.+...+...+|+.+++++|++++++|+.+.++.++...+..+++.+..|.+++++|++|++++
T Consensus       212 ~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  291 (342)
T TIGR00797       212 WEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRA  291 (342)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            45679999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHH
Q 018778          189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIR  240 (350)
Q Consensus       189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~  240 (350)
                      ++..++++.+.+++++++.++++++++++..++.+  |+++.+.+..++++.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~--~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       292 KEVARVALKLSLLLGLVLAIILILFREFIARLFTN--DPEVLELAAIYLIFV  341 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999965  789999999998764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.26  E-value=1.8e-08  Score=98.41  Aligned_cols=234  Identities=9%  Similarity=-0.010  Sum_probs=177.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh-hhHhHHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHhccCCHHHH
Q 018778          113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSS-LELAALGPGTVLCDNMSYIF--MFLSIATSNLVATSLTNRDKNEV  188 (350)
Q Consensus       113 k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~-~~laa~~la~~~~~~~~~~~--~gl~~a~~~~~s~~~g~~~~~~~  188 (350)
                      ..++|-++-.....++.-+.+++-..+++. +|. ...+++.++.++-|+.--+.  ..++++..|...++..+++.++.
T Consensus         7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~   86 (518)
T COG0728           7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA   86 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence            445566666666666666667775555555 675 67889999999999987665  56899999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCC-ccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHH
Q 018778          189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK-NVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL  267 (350)
Q Consensus       189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~-d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~  267 (350)
                      ++..+........+.+.+.++..++++++...+..+. |++....+....++..|..++..+..+..++||+.++...+.
T Consensus        87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a  166 (518)
T COG0728          87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA  166 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence            8888888877777788888888889999995554542 223333788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHHHHHHHHH
Q 018778          268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMM  346 (350)
Q Consensus       268 ~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~P~~i~~  346 (350)
                      +.-++-.+.-+...+++..+...-..+.+|++.++-+...++.+..++|.+......+..+.+..|++.+...|..+..
T Consensus       167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~lk~~~~~~~p~~l~~  245 (518)
T COG0728         167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGV  245 (518)
T ss_pred             hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCchhHHHHHHHHHHHHHHH
Confidence            8877777665544444443332247788999999999999999999888763333322334467888888888877653

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=99.21  E-value=2.4e-08  Score=90.13  Aligned_cols=217  Identities=15%  Similarity=0.085  Sum_probs=153.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 018778          116 MKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQIS  193 (350)
Q Consensus       116 ~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~~~~  193 (350)
                      +|-+.-..+.+++..+.+.+-..++.| +|+++.|.+++...+.++...+. .|+..+....+++...+  +++.+.+..
T Consensus         2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~   79 (273)
T PF01943_consen    2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS   79 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence            455666778888888888888899998 59999999999999999888774 88888888777776432  344445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 018778          194 VLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVA  273 (350)
Q Consensus       194 ~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~  273 (350)
                      ......++.++......+     +...++.+   +.   ...+........++..+......++++.++.+......++.
T Consensus        80 ~~~~~~~~~~~i~~~~~~-----~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (273)
T PF01943_consen   80 SVLFLLLIFSLIFLLILL-----IASFFGNP---SL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIIS  148 (273)
T ss_pred             HHHHHHHHHHHHHHHHHH-----HHHHcCCc---hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            454444444333333322     22244332   22   22222222223357888889999999999999999999999


Q ss_pred             HHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHHHHHHHHHhh
Q 018778          274 SAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMS  348 (350)
Q Consensus       274 ~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~P~~i~~~s  348 (350)
                      .++..++..++++ .+.++.+..++..++..+..++..++.+|+.+  .++...+++.++++++.++|..+..+.
T Consensus       149 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (273)
T PF01943_consen  149 SLLSLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PRFSFFSKKFFKEILRFGLPLFLSSLL  220 (273)
T ss_pred             HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccccccchHHHHHHHHHHHHHHHHHHH
Confidence            8888776655554 34458899999999999998888887776542  333445588999999999999887653

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PRK10459 colanic acid exporter; Provisional

Probab=99.16  E-value=1.5e-08  Score=100.24  Aligned_cols=215  Identities=9%  Similarity=-0.004  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCHHHHHH
Q 018778          113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQH  190 (350)
Q Consensus       113 k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~  190 (350)
                      ++..+-+....+..+...+.+.+...++.| +|+++.+.++.+..+..+...+. .|++.+..    |. .++++    +
T Consensus         5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~-~~~~~----~   75 (492)
T PRK10459          5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR-QDISH----L   75 (492)
T ss_pred             HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc-ccCCH----H
Confidence            456666777888888999999999999999 59999999999999988887766 67776552    22 12222    2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHH
Q 018778          191 QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKAL  270 (350)
Q Consensus       191 ~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~  270 (350)
                      .......+.++.++.+.++.+++++++..+++.   ++    ...+++++.+..++..+.......++..++.+......
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~  148 (492)
T PRK10459         76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHN---PE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE  148 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---hh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence            344555666777777777777777777766533   23    34567888888888899999999999999999988888


Q ss_pred             HHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHHHHHHHHHh
Q 018778          271 VVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMM  347 (350)
Q Consensus       271 ~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~P~~i~~~  347 (350)
                      ++..++..++..++++ .++|+.+..++..+++.+..++..+..++ ++.+ + .+.+++.+|++++.++|.....+
T Consensus       149 ~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~-~-~~~~~~~~k~ll~~~~~~~~~~~  221 (492)
T PRK10459        149 ISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRP-A-LHFSLASVKPNLSFGAWQTAERI  221 (492)
T ss_pred             HHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCc-c-ceecHHHHHHHHhhhHHHHHHHH
Confidence            8888777766655543 57899999999999998877655433322 2221 1 12456789999999999987653

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.14  E-value=8.7e-11  Score=114.62  Aligned_cols=209  Identities=14%  Similarity=0.028  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Q 018778          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGS--SLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN  186 (350)
Q Consensus       109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g--~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~  186 (350)
                      .+.++.++++++|..+..++++.+..+-....|.++  ..++++.++...+......+..+++.+.++.++..+|+++.+
T Consensus       243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~  322 (473)
T KOG1347|consen  243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK  322 (473)
T ss_pred             hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence            455689999999999999999999999999999997  468888888888888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHH
Q 018778          187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP  266 (350)
Q Consensus       187 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~  266 (350)
                      ..+......+..++.+++..+.....+.+.+..+|.  +|+|+.+......+++++...+.....++++..+|.|..+..
T Consensus       323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift--~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~g  400 (473)
T KOG1347|consen  323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFT--NSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIG  400 (473)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccce
Confidence            999999999999999999999999989999999994  488999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018778          267 LKALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGY  319 (350)
Q Consensus       267 ~~~~~~~~-~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~  319 (350)
                      .++++.+. ++.+.+..++-+..++|..|.|++...+..+....+.....+.+|
T Consensus       401 a~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW  454 (473)
T KOG1347|consen  401 AVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDW  454 (473)
T ss_pred             EEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccH
Confidence            98877766 555666666666678999999999999955555555555444443

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=98.88  E-value=3.3e-06  Score=75.33  Aligned_cols=193  Identities=14%  Similarity=0.088  Sum_probs=128.2

Q ss_pred             HHHHHHHHHhc-cChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018778          132 MSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIF  209 (350)
Q Consensus       132 ~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~  209 (350)
                      .+++-..++.| +|+++.|.++....+..+...+. .|+.....    + ..++++++.++..+..+....++++.+.++
T Consensus         3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (251)
T PF13440_consen    3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLV----R-SAARDKQDIRSLLRFSLLVSLLLAVILAIL   77 (251)
T ss_pred             HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677888 69999999999998888877764 55544443    3 345667777777776665555555444443


Q ss_pred             HHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhHhhHHHHhhhc
Q 018778          210 TKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLG  289 (350)
Q Consensus       210 ~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~lni~l~~ili~~~~  289 (350)
                      ..    .+..++ +  +    .....++.+..+..++..+......++++.++.+......++..++.+++..++. ..+
T Consensus        78 ~~----~~~~~~-~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  145 (251)
T PF13440_consen   78 AI----LIAYFF-G--D----PELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLL-YLG  145 (251)
T ss_pred             HH----HHHHHh-C--C----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            22    222233 3  1    2233456677788889999999999999999999999999999888844444443 344


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHHHHHHHHHh
Q 018778          290 YGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMM  347 (350)
Q Consensus       290 ~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~P~~i~~~  347 (350)
                      .++.+..++..++.++..+..+...+++  .+.+   +..+.. +..+.+.|..+..+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~-~~~~~~~~~~~~~~  197 (251)
T PF13440_consen  146 LNLWSILLAFIISALLALLISFYLLRRK--LRLS---FKFSWR-RLLKYGLPFSLSSL  197 (251)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccc--cCCC---chhhHH-HHHHHHHHHHHHHH
Confidence            5888999999999988777666543322  1111   122222 36788888776654

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.86  E-value=5.3e-08  Score=79.97  Aligned_cols=80  Identities=25%  Similarity=0.197  Sum_probs=75.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018778          237 VQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQ  316 (350)
Q Consensus       237 l~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~  316 (350)
                      +++++++.++..+.......+++.||++..++..+++.++|++++++++  +.+|..|+++|+.+++++.+++..++.+|
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k   79 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK   79 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999996  68899999999999999999999888887


Q ss_pred             cc
Q 018778          317 KG  318 (350)
Q Consensus       317 ~~  318 (350)
                      +-
T Consensus        80 ~~   81 (146)
T PF14667_consen   80 KI   81 (146)
T ss_pred             Hh
Confidence            64

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.75  E-value=2.2e-06  Score=84.46  Aligned_cols=219  Identities=14%  Similarity=0.073  Sum_probs=151.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHhHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCHHHHHH
Q 018778          113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQH  190 (350)
Q Consensus       113 k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~~~~-~gl~~a~~~~~s~~~g~~~~~~~~~  190 (350)
                      +++.+-+.-..+..+...+...+....+.| +|+++.+.++.+..+..+...+. .|+..+....++++...+++.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~~   85 (480)
T COG2244           6 KKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLIL   85 (480)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHHH
Confidence            677788888889999999999999999999 69999999999999999998887 8999999999998876666665555


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHH
Q 018778          191 Q-ISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKA  269 (350)
Q Consensus       191 ~-~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~  269 (350)
                      . ....+.+.+..+++.........+.      .       ......+++..++.++........+++|+.++.+.....
T Consensus        86 ~~~~~~l~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (480)
T COG2244          86 LSVLLLLLLALILLLLLLLIAYLLAPI------D-------PVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS  152 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc------C-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence            5 4544444444444444433322111      1       223456778899999999999999999999999999888


Q ss_pred             HHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHh-hccCccccccCCChHHHHHHHHHHHHHHHHHhh
Q 018778          270 LVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLN-QKGYNAFAISIPLPSELLAIFELAAPVFVMMMS  348 (350)
Q Consensus       270 ~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~l~~P~~i~~~s  348 (350)
                      .+.. ..-+...+.+.   .....++.++..++..........+.. ++++......+..++.+++.++.++|..+..+.
T Consensus       153 ~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~  228 (480)
T COG2244         153 IVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLL  228 (480)
T ss_pred             HHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHhhHHHHHHHH
Confidence            4444 11111111111   134556666667776666555555543 232222232333478999999999999877653

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=98.51  E-value=0.0002  Score=65.06  Aligned_cols=228  Identities=12%  Similarity=0.044  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---hhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 018778          112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQGS---SLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV  188 (350)
Q Consensus       112 ~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g---~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~  188 (350)
                      ++++.++-+|+.++.+...+...+-+.-+.+-.   .+.+|+|+++..+.-++..+...+-.....+     +.+++++.
T Consensus        10 y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~-----V~s~rsrr   84 (345)
T PF07260_consen   10 YWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVF-----VNSKRSRR   84 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHH-----hcchhhhH
Confidence            478999999999999999888888888887743   3459999999999988887776555544433     33322222


Q ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHH
Q 018778          189 QHQISVLLFVGLACG--FSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP  266 (350)
Q Consensus       189 ~~~~~~~~~~~~~~~--i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~  266 (350)
                        ..-.+.....++.  +...+.+-.++..++.-+++- ++++.+.+...+.++.+-.++..+....++++-=.+++...
T Consensus        85 --~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgV-s~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV  161 (345)
T PF07260_consen   85 --KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGV-SPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV  161 (345)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence              1222222222111  112222334456665555444 67999999999999999999999999999998866666655


Q ss_pred             HHHHHHHHHHHhHhhHHHHhh-------hchhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChHHHHHHHHHH
Q 018778          267 LKALVVASAVNGIGDIVLCRF-------LGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELA  339 (350)
Q Consensus       267 ~~~~~~~~~lni~l~~ili~~-------~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~  339 (350)
                      ...++...+..+++..+++..       ...|+.|...+..+-....++.++.-+........+..+.+...++++++..
T Consensus       162 ~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~  241 (345)
T PF07260_consen  162 GSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFW  241 (345)
T ss_pred             ehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHH
Confidence            555555454444433344311       1134444333333322222221111222221111222344567889999999


Q ss_pred             HHHHHHHh
Q 018778          340 APVFVMMM  347 (350)
Q Consensus       340 ~P~~i~~~  347 (350)
                      +|.+..+.
T Consensus       242 ~PL~~~~~  249 (345)
T PF07260_consen  242 WPLALVLA  249 (345)
T ss_pred             HHHHHHHH
Confidence            99987654

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=98.45  E-value=1.7e-05  Score=78.90  Aligned_cols=202  Identities=14%  Similarity=0.096  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-ChhhHhHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhccCC----
Q 018778          113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ--G-SSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVATSLTNRD----  184 (350)
Q Consensus       113 k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~--~-g~~~laa~~la~~~~~~~~-~~~~gl~~a~~~~~s~~~g~~~----  184 (350)
                      +++++++...+.+.++-.+.+--|.+++..  + ..++.|.|++++.+-.++. .++.-+=-..-...++....++    
T Consensus       253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~  332 (549)
T PF04506_consen  253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK  332 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence            789999999999999999999999999999  5 5788999998887777654 3334455555556666654432    


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 018778          185 -----KNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLG  259 (350)
Q Consensus       185 -----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~  259 (350)
                           .++..+.+...+++...+|+.+..+....++.++.++++++  =....+...+++.+..+|+.++|.+.-++.++
T Consensus       333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~--w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s  410 (549)
T PF04506_consen  333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSR--WSSTSAPSLLRAYCYYIPFLAINGITEAFVFS  410 (549)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhc--ccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence                 24567788888889999998888888888999999988752  22233577899999999999999999999998


Q ss_pred             CCCChHHH---HHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778          260 MKDSWGPL---KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK  317 (350)
Q Consensus       260 ~g~~~~~~---~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~  317 (350)
                      ....+...   ...++..++.+..+|+|+.. ++|..|..+|.++++.+..+..++++++.
T Consensus       411 ~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~  470 (549)
T PF04506_consen  411 VASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY  470 (549)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87655544   34566667778888998866 78999999999999999999888887653

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.81  E-value=0.0022  Score=60.99  Aligned_cols=201  Identities=15%  Similarity=0.129  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ChhhHhHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhccC---CH
Q 018778          113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQG---SSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVATSLTNR---DK  185 (350)
Q Consensus       113 k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~---g~~~laa~~la~~~~~~~~-~~~~gl~~a~~~~~s~~~g~~---~~  185 (350)
                      +++.+...-.+-..++-.+.+--|.+++.-.   +-++.|.|.+.+..-.+.. .++.-+--......+|....+   |.
T Consensus       239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~  318 (530)
T KOG2864|consen  239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV  318 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence            6677777888888888888888899988853   3345555654443333322 222334444444555555444   44


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChH
Q 018778          186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWG  265 (350)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~  265 (350)
                      ++...++...+.....+|+.+..+....++.++.+.+|++  =....+...+++.++.+|+.++|.+.-+++++.+..+.
T Consensus       319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~k--wss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q  396 (530)
T KOG2864|consen  319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSK--WSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ  396 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCcc--ccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence            5556677777888888887777777778889999998863  22233457899999999999999999999998876665


Q ss_pred             HHH---HHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778          266 PLK---ALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK  317 (350)
Q Consensus       266 ~~~---~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~  317 (350)
                      .-.   ..++..++.++++|+++-.  +|..|..+|..+...+.-+....++++.
T Consensus       397 i~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~  449 (530)
T KOG2864|consen  397 IDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY  449 (530)
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            543   4566667788899999864  4779999999999888877776666553

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.38  E-value=0.0016  Score=58.48  Aligned_cols=72  Identities=19%  Similarity=0.141  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018778          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSL  180 (350)
Q Consensus       109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~-g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~  180 (350)
                      ++..|++++.+.|..++.+...+...+|.++++++ |++++|.|+.+.++......+...+.....|..++.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~  273 (273)
T PF01943_consen  201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW  273 (273)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            56679999999999999999999999999999995 8999999999999999999999999999999998863

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=96.26  E-value=0.035  Score=49.13  Aligned_cols=65  Identities=17%  Similarity=0.086  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHhHHhhhHHHHHHHH-HHHHHHHHHHHHHHHH
Q 018778          114 EIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVAT  178 (350)
Q Consensus       114 ~i~~~~~P~~l~~i~~~~~~~i~~~~ig~-~g~~~laa~~la~~~~~~~~-~~~~gl~~a~~~~~s~  178 (350)
                      ++++.+.|..+..++..+...+|.++++. +|.+++|.|+.+.++...+. .+..+++....|..+|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar  250 (251)
T PF13440_consen  184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR  250 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            48999999999999999999999999999 79999999999999999888 7789999999998876

>COG4267 Predicted membrane protein [Function unknown]

Probab=92.05  E-value=11  Score=35.71  Aligned_cols=134  Identities=7%  Similarity=0.036  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhH
Q 018778          165 FMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAW  244 (350)
Q Consensus       165 ~~gl~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~  244 (350)
                      ..|+....+-.+|...=+|+.+++..-+--...++...+..++.+.        -..+.  +.     ...|=...+...
T Consensus        77 Tgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v--------f~~~~--~~-----si~yk~l~~~~F  141 (467)
T COG4267          77 TGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV--------FFVNN--QY-----SIVYKILACALF  141 (467)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh--------hhhcC--ch-----hHHHHHHHHHHH
Confidence            3567777777777777777777766555444444444433333211        11111  11     123333445566


Q ss_pred             HHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHhHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018778          245 PAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQ  316 (350)
Q Consensus       245 ~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~lni~l~~ili~~~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~  316 (350)
                      ...+..++...++.++++.+.....-.++.++...+..++-   ++++.|..++..++..+...+...++.|
T Consensus       142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr  210 (467)
T COG4267         142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILR  210 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            66777888889999999999999999999999888777665   5689999999999999988888877755

>COG4267 Predicted membrane protein [Function unknown]

Probab=90.97  E-value=11  Score=35.79  Aligned_cols=118  Identities=12%  Similarity=-0.039  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCCh
Q 018778          185 KNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSW  264 (350)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~  264 (350)
                      .++....+++.+.-..-+-...++.+.++++.++.+++-+      +.--+..++-.++.-++.....+-.+.-=..+-+
T Consensus       319 ~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS------~~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~  392 (467)
T COG4267         319 LKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLS------EYYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRR  392 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3344445555555555566667777788999999999662      3333445555555555555444444444455566


Q ss_pred             HHHHHHHHHHHHHhHhhHHHHh-hhchhHHHHHHHHHHHHHHHHH
Q 018778          265 GPLKALVVASAVNGIGDIVLCR-FLGYGIAGAAWATMASQVIAAY  308 (350)
Q Consensus       265 ~~~~~~~~~~~lni~l~~ili~-~~~~Gi~Gaa~A~~is~~~~~~  308 (350)
                      ..+.....-.+.|.++.+++.- ++++--.|..+|..+.-.+...
T Consensus       393 i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~~~  437 (467)
T COG4267         393 IALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLVAFK  437 (467)
T ss_pred             hhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHHHHh
Confidence            6666677777888888887763 3444445566666555444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	1e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 40/254 (15%), Positives = 84/254 (33%), Gaps = 12/254 (4%)

Query: 106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIF 165
                +   ++K   P     +    M  +DT + G  S++++AA+     +        
Sbjct: 5   HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG 64

Query: 166 MFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK 225
           + L +A   +VA       ++++  ++   L + L     ++    F     +      +
Sbjct: 65  VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVL-FQTQFIIRFMDVEE 123

Query: 226 NVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVL- 284
            +        Y+     A PA L     +S + GM  +   +    +   +N   + +  
Sbjct: 124 AMATK--TVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFV 181

Query: 285 ---CRFLGYGIAGAAWATMASQVIAAYMMII----NLNQKGYNAFA-ISIPLPSELLAIF 336
                    G  G   AT     I   +++     +        F     P P EL+ +F
Sbjct: 182 YGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLF 241

Query: 337 ELAAPVFVMMMSKV 350
            L  PV   +  +V
Sbjct: 242 RLGFPVAAALFFEV 255

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 9e-06
 Identities = 55/359 (15%), Positives = 109/359 (30%), Gaps = 98/359 (27%)

Query: 54  PKDHQKRFITTCLSSSQE-----FASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQ-- 106
                   +   L S QE     F  E    +    L +  + E++   + T    +Q  
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 107 SIWN-----------------QIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLEL 148
            ++N                 ++++ +    PA  + I G  +       +G G + + L
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--V-------LGSGKTWVAL 168

Query: 149 AALGPGTVLCDNMSYIFMFLSIA---TSNLVATSLTNR----DKNEVQ---HQISV-LLF 197
                  V C     IF +L++    +   V   L       D N      H  ++ L  
Sbjct: 169 DVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 198 VGLACGFSMLIFTKFFG-----------MQALSAF---------TGSKNVHILPAANKYV 237
             +      L+ +K +             +A +AF         T  K V    +A    
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 238 QIRGLAWPAVLTGWVAQSASL-----GMKDSWGPLKALVVAS-AVNGIGDIV---LCRFL 288
            I        LT    +  SL       +    P + L      ++ I + +   L  + 
Sbjct: 288 HISLDHHSMTLT--PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW- 344

Query: 289 GYGIAGAAWATMA----SQVIAAYMMIINLN----QKGYNAFAI---SIPLPSELLAIF 336
                   W  +     + +I     +  L     +K ++  ++   S  +P+ LL++ 
Sbjct: 345 DN------WKHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.94
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.9

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.94  E-value=1.5e-26  Score=224.10  Aligned_cols=238  Identities=16%  Similarity=0.134  Sum_probs=214.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q 018778          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV  188 (350)
Q Consensus       109 ~~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~  188 (350)
                      ++..|++++.++|.++++++..+++.+|+.+++++|++++|+++++.++..+...+..|++.+..+.++|++|++|+++.
T Consensus         8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~   87 (460)
T 3mkt_A            8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKI   87 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence            34569999999999999999999999999999999999999999999998888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHH
Q 018778          189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLK  268 (350)
Q Consensus       189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~  268 (350)
                      ++.+++++.+.+++++++.++ ++++++++.+++.  |+++.+.+..|+++++++.++..+..+..+++|+.|+++.+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  164 (460)
T 3mkt_A           88 PFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDV--EEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV  164 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSS--TTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            999999999999999998876 6688999998866  6789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHhhHHHHhh----hchhHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cc----cccCCChHHHHHHHHHH
Q 018778          269 ALVVASAVNGIGDIVLCRF----LGYGIAGAAWATMASQVIAAYMMIINLNQKGYN-AF----AISIPLPSELLAIFELA  339 (350)
Q Consensus       269 ~~~~~~~lni~l~~ili~~----~~~Gi~Gaa~A~~is~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~il~l~  339 (350)
                      ..+++.++|++++++++..    +++|+.|+++|+.+++++..++.++++++++.. +.    ++.+++++.+++++++|
T Consensus       165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  244 (460)
T 3mkt_A          165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG  244 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence            9999999999999999975    379999999999999999999888887765432 21    22356778999999999


Q ss_pred             HHHHHHHhhc
Q 018778          340 APVFVMMMSK  349 (350)
Q Consensus       340 ~P~~i~~~s~  349 (350)
                      +|.+++.+.+
T Consensus       245 ~p~~~~~~~~  254 (460)
T 3mkt_A          245 FPVAAALFFE  254 (460)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            9999887653

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.90  E-value=9.6e-23  Score=197.23  Aligned_cols=206  Identities=16%  Similarity=0.083  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Q 018778          110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQ  189 (350)
Q Consensus       110 ~~~k~i~~~~~P~~l~~i~~~~~~~i~~~~ig~~g~~~laa~~la~~~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~~~~  189 (350)
                      +.+|+++++++|.+++.+...+...+|+.+++++|++++|+|+++.++.++...+..+++.+..|.+++++|++|+++++
T Consensus       235 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~  314 (460)
T 3mkt_A          235 KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAA  314 (460)
T ss_dssp             SSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCChHHHHH
Q 018778          190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKA  269 (350)
Q Consensus       190 ~~~~~~~~~~~~~~i~~~~~~~~~~~~il~l~~~~~d~~v~~~a~~yl~i~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~  269 (350)
                      +..+++..+.+.++++++++++++++++..++.+  |+++.+.+..++++++++.++..++.+..+++++.||++.+++.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  392 (460)
T 3mkt_A          315 IAANVGLMTGLATACITALLTVLFREQIALLYTE--NQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR  392 (460)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            9999999999999999999999999999999965  67899999999999999999999999999999999999999999


Q ss_pred             HHHHH-HHHhHhhHHHHhh----hc-hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018778          270 LVVAS-AVNGIGDIVLCRF----LG-YGIAGAAWATMASQVIAAYMMIINLNQK  317 (350)
Q Consensus       270 ~~~~~-~lni~l~~ili~~----~~-~Gi~Gaa~A~~is~~~~~~~~~~~~~~~  317 (350)
                      .+++. ++|++++++++..    ++ +|+.|+++|+.+++++.+++..++++|+
T Consensus       393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988 9999999999876    56 9999999999999999988877666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00